Query 009584
Match_columns 531
No_of_seqs 96 out of 118
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:28:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocy_A RAB guanine nucleotide 97.3 0.016 5.4E-07 53.8 17.3 129 35-186 6-136 (154)
2 2eqb_B RAB guanine nucleotide 96.3 0.07 2.4E-06 46.3 12.4 91 60-176 3-94 (97)
3 3oja_B Anopheles plasmodium-re 96.2 0.11 3.9E-06 53.9 15.9 124 58-195 452-581 (597)
4 1c1g_A Tropomyosin; contractIl 95.0 1.8 6.1E-05 38.5 27.1 17 60-76 11-27 (284)
5 2e7s_A RAB guanine nucleotide 94.6 0.2 6.7E-06 45.8 9.8 111 57-183 10-121 (135)
6 1i84_S Smooth muscle myosin he 94.1 0.009 3.1E-07 68.7 0.0 87 57-143 957-1045(1184)
7 1i84_S Smooth muscle myosin he 93.5 0.2 6.7E-06 57.8 9.4 17 59-75 861-877 (1184)
8 1c1g_A Tropomyosin; contractIl 93.3 4.1 0.00014 36.1 27.0 18 137-154 146-163 (284)
9 3vkg_A Dynein heavy chain, cyt 91.8 15 0.0005 47.5 23.2 36 62-97 1927-1969(3245)
10 2dfs_A Myosin-5A; myosin-V, in 91.8 2.9 9.8E-05 48.4 15.9 56 151-209 998-1054(1080)
11 3u59_A Tropomyosin beta chain; 91.6 2.6 9E-05 35.7 11.7 75 57-135 11-95 (101)
12 2dfs_A Myosin-5A; myosin-V, in 91.6 3.9 0.00013 47.3 16.7 80 108-190 959-1041(1080)
13 3oja_B Anopheles plasmodium-re 91.3 3.9 0.00013 42.4 15.0 57 105-161 473-533 (597)
14 3u1c_A Tropomyosin alpha-1 cha 90.4 4 0.00014 34.8 11.7 75 57-135 11-95 (101)
15 2hg7_A Phage-like element PBSX 89.4 0.068 2.3E-06 46.7 0.0 39 110-148 64-102 (110)
16 2v71_A Nuclear distribution pr 83.5 32 0.0011 32.8 16.3 43 48-90 35-77 (189)
17 2w6b_A RHO guanine nucleotide 83.4 4.7 0.00016 32.0 7.4 23 115-137 30-52 (56)
18 2w6b_A RHO guanine nucleotide 80.8 4.7 0.00016 31.9 6.6 38 135-172 15-52 (56)
19 3na7_A HP0958; flagellar bioge 80.6 41 0.0014 32.2 21.9 44 146-189 92-135 (256)
20 3vkg_A Dynein heavy chain, cyt 79.3 1.2E+02 0.004 39.7 21.6 45 52-96 1896-1947(3245)
21 3na7_A HP0958; flagellar bioge 77.7 51 0.0017 31.6 21.1 24 248-271 172-198 (256)
22 3ol1_A Vimentin; structural ge 76.5 38 0.0013 29.5 12.9 49 81-130 18-69 (119)
23 3tnu_B Keratin, type II cytosk 75.7 40 0.0014 29.4 12.2 62 56-118 30-91 (129)
24 3oja_A Leucine-rich immune mol 75.3 31 0.0011 35.1 12.7 69 121-189 412-480 (487)
25 3swk_A Vimentin; cytoskeleton, 75.1 34 0.0012 28.4 10.7 64 124-187 5-78 (86)
26 2p22_C Protein SRN2; endosome, 74.7 58 0.002 30.8 16.2 46 31-76 37-83 (192)
27 2v4h_A NF-kappa-B essential mo 74.7 24 0.00081 31.3 10.0 36 145-187 70-105 (110)
28 3mxz_A Tubulin-specific chaper 74.0 36 0.0012 30.0 11.1 94 164-266 14-109 (116)
29 1h7c_A Tubulin-specific chaper 73.3 29 0.00099 30.1 10.2 93 162-263 11-103 (108)
30 3oja_A Leucine-rich immune mol 73.0 67 0.0023 32.7 14.5 33 163-195 433-465 (487)
31 3ghg_A Fibrinogen alpha chain; 71.2 88 0.003 34.3 15.2 33 107-139 62-94 (562)
32 2fxo_A Myosin heavy chain, car 69.1 59 0.002 28.4 15.2 76 103-185 14-89 (129)
33 3l4f_A RHO guanine nucleotide 68.5 15 0.0005 29.6 6.6 42 135-176 12-53 (61)
34 3q8t_A Beclin-1; autophagy, AT 67.8 56 0.0019 27.7 12.3 41 166-206 33-74 (96)
35 3tnu_A Keratin, type I cytoske 66.9 56 0.0019 28.6 10.8 63 55-118 31-93 (131)
36 2eqb_B RAB guanine nucleotide 65.5 67 0.0023 27.8 10.8 68 57-142 28-95 (97)
37 3iyk_A VP5; icosahedral virus; 65.2 63 0.0022 35.1 12.6 20 236-255 281-301 (526)
38 1cii_A Colicin IA; bacteriocin 63.1 61 0.0021 35.2 12.0 26 92-117 388-413 (602)
39 2ocy_A RAB guanine nucleotide 61.6 1E+02 0.0035 28.5 18.0 91 135-239 49-139 (154)
40 2i1j_A Moesin; FERM, coiled-co 61.5 19 0.00065 38.8 8.0 71 74-156 291-361 (575)
41 3cl3_D NF-kappa-B essential mo 61.0 24 0.00084 32.0 7.4 93 57-156 4-102 (130)
42 3i00_A HIP-I, huntingtin-inter 59.7 71 0.0024 28.3 10.1 66 55-142 15-80 (120)
43 2e7s_A RAB guanine nucleotide 58.1 45 0.0016 30.4 8.7 44 137-180 39-82 (135)
44 3ol1_A Vimentin; structural ge 57.3 97 0.0033 26.9 15.2 78 57-139 22-99 (119)
45 2fxo_A Myosin heavy chain, car 56.2 1E+02 0.0035 26.9 17.0 67 113-186 52-118 (129)
46 2b5u_A Colicin E3; high resolu 55.2 2.2E+02 0.0075 31.1 14.6 68 105-183 345-427 (551)
47 3a7p_A Autophagy protein 16; c 54.2 1.4E+02 0.0047 27.8 13.2 79 56-143 59-137 (152)
48 1jad_A PLC-beta, phospholipase 52.9 1.8E+02 0.0063 28.8 20.9 76 152-244 161-240 (251)
49 2efl_A Formin-binding protein 51.5 1.6E+02 0.0053 27.6 22.5 38 122-159 115-152 (305)
50 1ic2_A Tropomyosin alpha chain 51.4 95 0.0033 25.1 9.4 27 57-83 8-34 (81)
51 4dyl_A Tyrosine-protein kinase 49.5 2.2E+02 0.0077 28.8 21.8 143 121-271 110-260 (406)
52 4ani_A Protein GRPE; chaperone 47.3 2E+02 0.0069 27.7 12.5 66 55-120 59-124 (213)
53 3o0z_A RHO-associated protein 46.9 1.9E+02 0.0065 27.2 16.5 27 104-130 64-90 (168)
54 3u06_A Protein claret segregat 44.3 45 0.0015 34.6 7.3 33 58-90 6-38 (412)
55 1qsd_A Protein (beta-tubulin b 42.6 1.4E+02 0.0049 25.7 9.0 84 164-258 10-93 (106)
56 1go4_E MAD1 (mitotic arrest de 39.5 20 0.00068 31.2 3.2 75 151-243 12-89 (100)
57 3jsv_C NF-kappa-B essential mo 37.8 1.1E+02 0.0039 26.3 7.5 40 145-191 48-87 (94)
58 1k1f_A Breakpoint cluster regi 36.2 46 0.0016 27.4 4.6 42 57-98 28-69 (72)
59 4e61_A Protein BIM1; EB1-like 35.1 68 0.0023 28.2 5.8 35 55-89 4-38 (106)
60 4etp_A Kinesin-like protein KA 34.6 99 0.0034 31.9 8.0 28 57-84 5-32 (403)
61 3mq9_A Bone marrow stromal ant 32.7 4E+02 0.014 26.8 14.9 27 173-199 444-470 (471)
62 1f5n_A Interferon-induced guan 32.5 3.4E+02 0.012 29.4 12.1 56 110-180 527-582 (592)
63 3l4f_A RHO guanine nucleotide 32.3 90 0.0031 25.1 5.6 27 114-140 26-52 (61)
64 3hnw_A Uncharacterized protein 31.3 2.9E+02 0.0098 24.7 11.3 44 53-96 57-102 (138)
65 2v71_A Nuclear distribution pr 30.7 3.6E+02 0.012 25.7 15.6 66 57-122 26-101 (189)
66 2j69_A Bacterial dynamin-like 30.7 5.6E+02 0.019 27.9 14.5 50 196-245 600-653 (695)
67 2i1j_A Moesin; FERM, coiled-co 30.4 1.2E+02 0.004 32.8 8.0 22 169-190 409-430 (575)
68 2yy0_A C-MYC-binding protein; 29.6 66 0.0022 24.7 4.3 33 53-85 17-49 (53)
69 3s9g_A Protein hexim1; cyclin 29.4 2E+02 0.007 25.2 7.8 27 167-193 60-86 (104)
70 1f5n_A Interferon-induced guan 29.1 5.8E+02 0.02 27.6 21.8 107 134-243 463-581 (592)
71 3ghg_A Fibrinogen alpha chain; 28.6 4.7E+02 0.016 28.8 12.0 52 81-139 79-130 (562)
72 2v0o_A FCHO2, FCH domain only 28.2 3.6E+02 0.012 24.9 19.2 14 256-269 236-249 (276)
73 2efk_A CDC42-interacting prote 28.2 3.7E+02 0.013 25.1 27.3 40 120-159 106-145 (301)
74 3hnw_A Uncharacterized protein 25.7 3.6E+02 0.012 24.1 12.7 75 106-195 59-133 (138)
75 3bas_A Myosin heavy chain, str 25.5 2.8E+02 0.0097 22.8 11.8 66 106-185 18-83 (89)
76 1h7c_A Tubulin-specific chaper 25.3 3.1E+02 0.011 23.6 8.3 29 65-93 10-38 (108)
77 3mq7_A Bone marrow stromal ant 24.1 3.9E+02 0.013 24.0 11.3 41 58-98 28-68 (121)
78 1deq_A Fibrinogen (alpha chain 23.4 6.7E+02 0.023 26.4 12.7 25 72-96 94-118 (390)
79 3tnu_A Keratin, type I cytoske 23.3 3.7E+02 0.013 23.3 10.4 30 61-90 30-59 (131)
80 3mq9_A Bone marrow stromal ant 23.2 5.8E+02 0.02 25.6 14.6 24 163-186 448-471 (471)
81 1m1j_B Fibrinogen beta chain; 22.5 6.2E+02 0.021 27.0 11.6 17 344-360 245-261 (464)
82 3m91_A Proteasome-associated A 22.2 1.8E+02 0.0061 22.4 5.5 26 129-154 22-47 (51)
83 1s1c_X RHO-associated, coiled- 21.7 3.4E+02 0.011 22.3 7.5 24 105-128 35-58 (71)
84 2jee_A YIIU; FTSZ, septum, coi 21.7 2.9E+02 0.0098 23.2 7.1 50 52-101 17-69 (81)
85 2b5u_A Colicin E3; high resolu 21.2 8.4E+02 0.029 26.7 17.1 50 195-245 383-432 (551)
86 3m48_A General control protein 20.7 80 0.0027 22.7 3.0 24 163-186 5-28 (33)
87 4b9q_A Chaperone protein DNAK; 20.6 6.5E+02 0.022 26.7 11.4 14 161-174 563-576 (605)
88 1nfn_A Apolipoprotein E3; lipi 20.0 5.2E+02 0.018 23.9 12.2 27 123-149 92-118 (191)
No 1
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.27 E-value=0.016 Score=53.82 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=97.9
Q ss_pred HHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 009584 35 AEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDD 113 (531)
Q Consensus 35 ~el~~v~~~~~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~s 113 (531)
+-|..-+|+.- |+|. +..++.+|..++.+|+.|+..+.. ++.+...+ .-+.+-+..
T Consensus 6 tKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~~----~~~l~~~~------------~~~~~e~~~ 62 (154)
T 2ocy_A 6 TQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKED----YNTLKREL------------SDRDDEVKR 62 (154)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHHH----HHHHHTHH------------HHHHHHHHH
T ss_pred HHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH------------hhhhHHHHH
Confidence 45666677766 6666 678899999999999999986543 33333221 235666777
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 009584 114 LKAEISRERKNRQRIEIVNSKLVNELADAKVS-AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR 186 (531)
Q Consensus 114 lk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss-~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKr 186 (531)
|..+|..|+..|..+|.-..++-.||-+.-.| |..|=+=.-.+|+.|..+|.=-+.|-+.+++-+.-++.|-.
T Consensus 63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 63 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997655 55555555678999999998888888888877666665443
No 2
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.26 E-value=0.07 Score=46.30 Aligned_cols=91 Identities=23% Similarity=0.285 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009584 60 LEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 139 (531)
Q Consensus 60 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 139 (531)
|..+|+.+|.+|++|+.+..... +-+..|..+|..||..|..+|.-..++-.||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~--------------------------~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRD--------------------------DEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888888888886655533 3334467788888889999999999999998
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009584 140 ADAKVS-AKRYMQDYEKERKERELIEEVCDELAKEIGE 176 (531)
Q Consensus 140 ae~Kss-~~~a~kelE~ERkaRellE~vCdELAkeI~e 176 (531)
-+.-.| |..|=+=.=.+|+.|..+|.--+.|...|+|
T Consensus 57 EeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 57 EDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 886654 4555555556677777777777777666654
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.17 E-value=0.11 Score=53.89 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRS------REHEKIRAFIDDLKAEISRERKNRQRIEIV 131 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKs------kE~eki~a~i~slk~ELe~ERk~Rkr~E~l 131 (531)
..|+.|+.+-+..|+.|+.+.......+..+..++.+.+..+.. +..+++... .++++..
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~ 517 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKV--------------FTHLKER 517 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHH--------------HHHHHhh
Confidence 33555666666666666666665555555555554444443331 111222222 2233335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 132 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 132 n~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
+.++.+++...+.++.+-.++|++-++.++.||..+++.-+.+.+.+.|+..++++.....+++
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666677777777777788888888888877777777777777776666554444
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.03 E-value=1.8 Score=38.48 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009584 60 LEAEVEQARTRIQELET 76 (531)
Q Consensus 60 Lk~EL~~Ar~rI~eL~~ 76 (531)
|+.+++.+...+.+|..
T Consensus 11 l~~~~~~~~~~~~~l~~ 27 (284)
T 1c1g_A 11 LKLDKENALDRADEAEA 27 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 33333333333333333
No 5
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.58 E-value=0.2 Score=45.76 Aligned_cols=111 Identities=16% Similarity=0.226 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
+..++.+|.-.+++|++|+..+. +++.+.+.+ ..+..-+..+..+|..||..|..+|.-..++-
T Consensus 10 L~~~r~~l~~~~~~~~~le~l~~----~l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie 73 (135)
T 2e7s_A 10 LNKSLKTIASQKAAIENYNQLKE----DYNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLN 73 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888554 344444433 13344456689999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 009584 137 NELADAKVS-AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEA 183 (531)
Q Consensus 137 ~ELae~Kss-~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~ 183 (531)
.||-+.-+| |..|=+=.-.+|+.|..+|.=-+.|-..+++-+.-++.
T Consensus 74 ~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 74 KEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997655 45555555667888888888888887777765444433
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.09 E-value=0.009 Score=68.74 Aligned_cols=87 Identities=14% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA--AWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 134 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~--awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 134 (531)
+..|+.+|+..+.++.+|..+......++..+-.+++.-+. +--.++...+...+..+..+|+........++....+
T Consensus 957 l~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~ 1036 (1184)
T 1i84_S 957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555554444444443332221 1122233344445555555555544444444444444
Q ss_pred HHHHHHHHH
Q 009584 135 LVNELADAK 143 (531)
Q Consensus 135 L~~ELae~K 143 (531)
|..++.+.+
T Consensus 1037 le~el~ele 1045 (1184)
T 1i84_S 1037 HESMISELE 1045 (1184)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444444433
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.47 E-value=0.2 Score=57.84 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009584 59 ALEAEVEQARTRIQELE 75 (531)
Q Consensus 59 aLk~EL~~Ar~rI~eL~ 75 (531)
.|+.+|...+..+..+.
T Consensus 861 ~L~~eL~el~~~L~~le 877 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAE 877 (1184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=93.34 E-value=4.1 Score=36.14 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009584 137 NELADAKVSAKRYMQDYE 154 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE 154 (531)
.++.+++..+..+-.+++
T Consensus 146 ~~l~~~~~~~~~~~~~~~ 163 (284)
T 1c1g_A 146 IQLKEAKHIAEDADRKYE 163 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.77 E-value=15 Score=47.46 Aligned_cols=36 Identities=6% Similarity=0.310 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHhhHHHHH
Q 009584 62 AEVEQARTRIQELETERRSS-------KKKLEHFLRKVSEEKA 97 (531)
Q Consensus 62 ~EL~~Ar~rI~eL~~E~~s~-------k~eie~l~KqlaEEK~ 97 (531)
.-|..|..+|.+|..+-... .++.+.+|.++..++.
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~ 1969 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666665554332 3345566666666543
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.76 E-value=2.9 Score=48.44 Aligned_cols=56 Identities=23% Similarity=0.384 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhh-hHHHHHHHHhhH
Q 009584 151 QDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDD-ERKMLQMAEVWR 209 (531)
Q Consensus 151 kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~ee-ER~MLqmAEvWR 209 (531)
++|++..+..+.+|+-++++-. +.+..|..|+.+-.+++..+++ +..++..++.+.
T Consensus 998 ~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A 998 KELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555544432 3334444444444444433322 223444444443
No 11
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.61 E-value=2.6 Score=35.71 Aligned_cols=75 Identities=16% Similarity=0.378 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHhhh----
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSR------EHEKIRAFIDDLKAEISRERKNRQ---- 126 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKsk------E~eki~a~i~slk~ELe~ERk~Rk---- 126 (531)
+.+|+.|.+.|..++.++++..+..... ..++.++-.+.+.| +.|++...+......|+...+.+.
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~----~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDR----CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999888887765444332 22333333332222 456777778888888888888887
Q ss_pred hHHHHHHHH
Q 009584 127 RIEIVNSKL 135 (531)
Q Consensus 127 r~E~ln~KL 135 (531)
.+.+||||+
T Consensus 87 evasLnRri 95 (101)
T 3u59_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455666665
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.58 E-value=3.9 Score=47.34 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 009584 108 RAFIDDLKAEISRERKNRQRI---EIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEAL 184 (531)
Q Consensus 108 ~a~i~slk~ELe~ERk~Rkr~---E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~l 184 (531)
..-+..|+.++++-.+..+.. +..-..|-.|+++.+..+.++.++++.-... ++++=++|...|...+.|...|
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~---~~~~~~~L~~kv~~L~~e~~~L 1035 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW---ADKYKHETEQLVSELKEQNTLL 1035 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333222 2223445566666666666666555542211 1222234444444444444444
Q ss_pred HHhhHH
Q 009584 185 KRESMK 190 (531)
Q Consensus 185 Kres~k 190 (531)
+++...
T Consensus 1036 ~qq~~~ 1041 (1080)
T 2dfs_A 1036 KTEKEE 1041 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.29 E-value=3.9 Score=42.40 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 105 EKIRAFIDDLKAEISRERKNRQ----RIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE 161 (531)
Q Consensus 105 eki~a~i~slk~ELe~ERk~Rk----r~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRe 161 (531)
....+.++.++.+++..|..-+ .+.....+|.+++..++.-......++.+.+++..
T Consensus 473 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 473 IQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD 533 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 3455666667777766554433 22333355666665555555555555554444443
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.39 E-value=4 Score=34.83 Aligned_cols=75 Identities=9% Similarity=0.286 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHhhh----
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSR------EHEKIRAFIDDLKAEISRERKNRQ---- 126 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKsk------E~eki~a~i~slk~ELe~ERk~Rk---- 126 (531)
|.+|+.|.+.|..++.+++...+..... ..++.+|-.+...| +.|++...+...+..|+...+.+-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~----~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEER----SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999888888887654433322 22233333322221 457777788888888888888888
Q ss_pred hHHHHHHHH
Q 009584 127 RIEIVNSKL 135 (531)
Q Consensus 127 r~E~ln~KL 135 (531)
.+.+||||+
T Consensus 87 ev~~L~Rri 95 (101)
T 3u1c_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555666665
No 15
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=89.41 E-value=0.068 Score=46.74 Aligned_cols=39 Identities=36% Similarity=0.468 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009584 110 FIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKR 148 (531)
Q Consensus 110 ~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~ 148 (531)
.|+.+..||..|+-+||++|-+|.-|++||+.+|..+..
T Consensus 64 q~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL~ 102 (110)
T 2hg7_A 64 QVELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLLS 102 (110)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999977643
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.52 E-value=32 Score=32.83 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=22.2
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009584 48 DQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLR 90 (531)
Q Consensus 48 eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~K 90 (531)
|-+.++=-|=..|..+|.++..++++|.......+.+++.+-.
T Consensus 35 EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 35 EFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555666666666666655554444444444433
No 17
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=83.40 E-value=4.7 Score=31.95 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 009584 115 KAEISRERKNRQRIEIVNSKLVN 137 (531)
Q Consensus 115 k~ELe~ERk~Rkr~E~ln~KL~~ 137 (531)
+.-||.|.|+|+++|.+=+|+.+
T Consensus 30 ~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 30 KKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44688899999999999998833
No 18
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=80.78 E-value=4.7 Score=31.92 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAK 172 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAk 172 (531)
|..|+.+.+.-+++.-+-||.|.|||.-||.+-..+.+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666677778889999999999999877754
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.60 E-value=41 Score=32.18 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 009584 146 AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM 189 (531)
Q Consensus 146 ~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~ 189 (531)
+....++++.-.+....+|+-=-++...|...++++..++....
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666555554433
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.34 E-value=1.2e+02 Score=39.66 Aligned_cols=45 Identities=4% Similarity=0.136 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 009584 52 SAVSMVAALEAE-------VEQARTRIQELETERRSSKKKLEHFLRKVSEEK 96 (531)
Q Consensus 52 s~~Slv~aLk~E-------L~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK 96 (531)
+.+.+|+.-+.= |...+.|.+-=..--......++.|-++|++.+
T Consensus 1896 syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~ 1947 (3245)
T 3vkg_A 1896 HYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN 1947 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544443 333333333222223334444555555555443
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.72 E-value=51 Score=31.56 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=11.1
Q ss_pred CCchhHHHHHHHHHHH---hhcccccc
Q 009584 248 NPDIQEMKEAEMLRQA---AASVNIQE 271 (531)
Q Consensus 248 ~~d~~~~r~a~~~rqs---~~Sv~~~~ 271 (531)
..+...+..=+.+|.. +.-|++.+
T Consensus 172 ~i~~~lL~~Yerir~~~~g~avv~v~~ 198 (256)
T 3na7_A 172 KTEPKIYSFYERIRRWAKNTSIVTIKK 198 (256)
T ss_dssp TSCHHHHHHHHHHHHHHGGGSEEECBT
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEeeC
Confidence 3444555444555543 33344443
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.49 E-value=38 Score=29.49 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhhHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009584 81 SKKKLEHFLRKVSE---EKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEI 130 (531)
Q Consensus 81 ~k~eie~l~KqlaE---EK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ 130 (531)
+...|..|.++|.. |++.- --+.+.++.+++++|...+.|...|..+|.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l-~leldn~~~~~edfk~KyE~E~~~r~~~E~ 69 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARV-EVERDNLAEDIMRLREKLQEEMLQREEAEN 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44556666665532 22211 124456666666777777777666665553
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.70 E-value=40 Score=29.39 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI 118 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL 118 (531)
.+.+-+.|+-..|..|+.|..|-.+.+.....|-..+++=.. +-..+...+.+.|..+..+|
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~-~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ-RGELALKDARNKLAELEEAL 91 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhH
Confidence 356678888888888999988888888777777777765433 33344455555555555544
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.26 E-value=31 Score=35.13 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=52.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 009584 121 ERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM 189 (531)
Q Consensus 121 ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~ 189 (531)
..+..++.|.+-.++-.|...++.-.+..-.+.++.++....++.+-+++-+.|.+.++.+-.+.+.-.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQ 480 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHH
Confidence 456666667777777777777777777777777888888888888888888888888888777665533
No 25
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=75.12 E-value=34 Score=28.42 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=41.9
Q ss_pred hhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hccHHHHHHHHHh
Q 009584 124 NRQRIEIV---NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEI-------GEDKAEVEALKRE 187 (531)
Q Consensus 124 ~Rkr~E~l---n~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI-------~edkaEVe~lKre 187 (531)
+|++++.+ |.+|.-|+-.++.++-.+..-||.|-..|.-+|.-..-|-|.+ -+.++.|+.|+.|
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 5677777777888888888888888888877776544444443 4566666666643
No 26
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=74.75 E-value=58 Score=30.79 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCChHHHHHhhhhc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 009584 31 LKTPAEVRQIYSHM-KHLDQQVSAVSMVAALEAEVEQARTRIQELET 76 (531)
Q Consensus 31 lkts~el~~v~~~~-~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~ 76 (531)
..+..+|..+++.. -+.+..+..+.-+.++..+++..+..+.+|..
T Consensus 37 ~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~ 83 (192)
T 2p22_C 37 LLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEE 83 (192)
T ss_dssp SCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888776 43333333333377788888888777777743
No 27
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=74.72 E-value=24 Score=31.31 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 009584 145 SAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 187 (531)
Q Consensus 145 s~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKre 187 (531)
-+.=+-.|.+.||.+|+-+ +.++.+++.+++.|.++
T Consensus 70 Qv~IY~~DF~aERadREkl-------~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 70 QADIYKADFQAERHAREKL-------VEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhhHHHH-------HhHHHHHHHHHHHHHHH
Confidence 3444566777788777644 34444455555555544
No 28
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=74.02 E-value=36 Score=30.03 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 009584 164 EEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 243 (531)
Q Consensus 164 E~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~ 243 (531)
=.+|..|+|+-.-|+.|+..-.....++..+-..+-.+=+--+| |.+.+--|.+=..-|.....+|+.||.
T Consensus 14 tg~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~ev---------L~Et~~mipd~~~RL~~a~~~L~~~l~ 84 (116)
T 3mxz_A 14 TSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENV---------LGESRMMIPDCHKRLESALADLKSTLA 84 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777766665555555432222222222221 334444455555667777888999998
Q ss_pred hc--CCCCchhHHHHHHHHHHHhhc
Q 009584 244 SR--SINPDIQEMKEAEMLRQAAAS 266 (531)
Q Consensus 244 sk--~~~~d~~~~r~a~~~rqs~~S 266 (531)
.- ....+..++..|.....+++.
T Consensus 85 ~~~~~~~~~~ee~~~Ak~~l~~ae~ 109 (116)
T 3mxz_A 85 ELEETDEKEGPEIEDAKKTVADVEK 109 (116)
T ss_dssp HHHTC-CCCCHHHHHHHHHHHHHHT
T ss_pred HhcccCCCChHHHHHHHHHHHHHHH
Confidence 63 233567788888665555543
No 29
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=73.25 E-value=29 Score=30.09 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHH
Q 009584 162 LIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAF 241 (531)
Q Consensus 162 llE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~F 241 (531)
+--.+|..|+|+-.-|+.|+........+++.+-..+. +|.-.+.- |.+.+--|.+=..-|.....+|+.|
T Consensus 11 Ikt~~vkRL~KE~~~Y~kE~~~q~~riek~k~e~~Dey-~iKkq~ev--------l~Et~~mipd~~~Rl~~a~~~L~~~ 81 (108)
T 1h7c_A 11 IKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENY-DIKKQAEI--------LQESRMMIPDCQRRLEAAYLDLQRI 81 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCT-HHHHHHHH--------HHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33457777888888888888887777777765533232 33333322 3344444555555677777888899
Q ss_pred HhhcCCCCchhHHHHHHHHHHH
Q 009584 242 LSSRSINPDIQEMKEAEMLRQA 263 (531)
Q Consensus 242 L~sk~~~~d~~~~r~a~~~rqs 263 (531)
|.+-....+..++..|......
T Consensus 82 l~~e~~~~~~ee~~~Ake~l~~ 103 (108)
T 1h7c_A 82 LENEKDLEEAEEYKEARLVLDS 103 (108)
T ss_dssp HHHCGGGTTSHHHHHHHHHHHH
T ss_pred HHhcccCCCcHHHHHHHHHHHH
Confidence 9864333566777777544433
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.01 E-value=67 Score=32.67 Aligned_cols=33 Identities=12% Similarity=-0.050 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 163 IEEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 163 lE~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
++..++....+|...+.|-+.++.+...+-..+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 666667777666666666666665544443333
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.23 E-value=88 Score=34.28 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009584 107 IRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 139 (531)
Q Consensus 107 i~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 139 (531)
+...|..||.+|++=.+.++-++..-+-+..+|
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 445566666666666666666666655444444
No 32
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=69.12 E-value=59 Score=28.45 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 009584 103 EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVE 182 (531)
Q Consensus 103 E~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe 182 (531)
+-.+...-|..++..|..+-+.|+.+|.-|.+|..|..+.. ..|+.|+-.-.=.|+.|+.|...=.+....+.
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~-------~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~ 86 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ-------LQVQAEQDNLADAEERCDQLIKNKIQLEAKVK 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566778899999999999999999999999887655 44556666666678888888777666666666
Q ss_pred HHH
Q 009584 183 ALK 185 (531)
Q Consensus 183 ~lK 185 (531)
.|.
T Consensus 87 el~ 89 (129)
T 2fxo_A 87 EMN 89 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 33
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=68.50 E-value=15 Score=29.64 Aligned_cols=42 Identities=19% Similarity=0.430 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGE 176 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~e 176 (531)
|..|+.+.+.-.++.-+=+|.|.++|.-||.+|..+.+...+
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 445666666666677777888899999999999888876543
No 34
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=67.80 E-value=56 Score=27.67 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=30.1
Q ss_pred HHHHHHHhhhccHHHHHHHHHhhHHHHhhh-hhhHHHHHHHH
Q 009584 166 VCDELAKEIGEDKAEVEALKRESMKLREEV-DDERKMLQMAE 206 (531)
Q Consensus 166 vCdELAkeI~edkaEVe~lKres~k~reE~-eeER~MLqmAE 206 (531)
-...++.+|...++|.+.|..+-.+.|.+. ..-+.++.+-+
T Consensus 33 e~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 33 NRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999998887777666 55555555543
No 35
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.88 E-value=56 Score=28.61 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI 118 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL 118 (531)
..+.+.+.|+-..|..|+.|..|-.+.+..-..|-..+++=.. +-..+...+.+.|..+..+|
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~-~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG-RYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888988888888887776777666665433 33334455555555554444
No 36
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.55 E-value=67 Score=27.82 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
+..|..+|...+.+-.+.++++.....+++.|.-.|=+|-- .=...+|+.|-.+|.-|.+|.
T Consensus 28 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN------------------~MVa~ar~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 28 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN------------------NMVADARKEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443311 011345888999999999999
Q ss_pred HHHHHH
Q 009584 137 NELADA 142 (531)
Q Consensus 137 ~ELae~ 142 (531)
..|.|.
T Consensus 90 ~qL~d~ 95 (97)
T 2eqb_B 90 EQLREK 95 (97)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 999874
No 37
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=65.22 E-value=63 Score=35.08 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=11.8
Q ss_pred HHHHHHHhhcC-CCCchhHHH
Q 009584 236 AELEAFLSSRS-INPDIQEMK 255 (531)
Q Consensus 236 ~elE~FL~sk~-~~~d~~~~r 255 (531)
.=||++|.++. ..+|....+
T Consensus 281 ~~iet~L~~~~~~i~D~~L~~ 301 (526)
T 3iyk_A 281 SVVSTILEYRAKEIPDNALAV 301 (526)
T ss_pred HHHHHHHhCCCCCCCHHHHHH
Confidence 45788888744 344544443
No 38
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=63.12 E-value=61 Score=35.20 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=14.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHH
Q 009584 92 VSEEKAAWRSREHEKIRAFIDDLKAE 117 (531)
Q Consensus 92 laEEK~awKskE~eki~a~i~slk~E 117 (531)
-+++.+.-+-+|.+.++.++-.++..
T Consensus 388 ~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 388 HANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34444444445556666666555555
No 39
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.56 E-value=1e+02 Score=28.54 Aligned_cols=91 Identities=25% Similarity=0.314 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhh
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQ 214 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQ 214 (531)
|..+++.+..-+.+.+.+|..|+..|.-.|..+..+-.++.+.-|-+ .++=-.|+--|- ---..++
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL-------------FeEAN~MVa~ar-~~~~~~e 114 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL-------------FDEANNMVADAR-KEKYAIE 114 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH-HHHHHHH
Confidence 33556677888888899999999999999999998888777665432 223334543220 0011223
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHHH
Q 009584 215 MKLVDAKVAVEQKYSQMNKLVAELE 239 (531)
Q Consensus 215 MKL~dAk~~leeK~s~ldkL~~elE 239 (531)
-|...-+.++.+|-..++.|+.+|.
T Consensus 115 ~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666655554
No 40
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=61.51 E-value=19 Score=38.85 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=45.5
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 74 LETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDY 153 (531)
Q Consensus 74 L~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kel 153 (531)
...-++...-+|..+-.|-.|||... ..| +.-|..||++|..+|.--.-|-.-|...+..+.++-.+|
T Consensus 291 f~~~r~~d~~e~qqm~~~a~e~~~~~-~~e-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (575)
T 2i1j_A 291 YMRRRKPDTIDVQQMKAQAREEKLAK-QAQ-----------REKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANL 358 (575)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHH-HHH-----------HTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCcHHHHHHHHHHHHHHHHH-HHH-----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555567777666666666533 233 334556788888877777777777777777777777666
Q ss_pred HHH
Q 009584 154 EKE 156 (531)
Q Consensus 154 E~E 156 (531)
.+-
T Consensus 359 ~~~ 361 (575)
T 2i1j_A 359 LEA 361 (575)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 41
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=60.97 E-value=24 Score=32.02 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh---HHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKV---SEEKAAWR---SREHEKIRAFIDDLKAEISRERKNRQRIEI 130 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kql---aEEK~awK---skE~eki~a~i~slk~ELe~ERk~Rkr~E~ 130 (531)
|.+|-.||..|+.+..+-+.++++.....-.+-+++ .-|.-+-| .-.-++++=-+++|..+|.-||.. +..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~---~~e 80 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQA---ASE 80 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 577889999999999999998888876554444333 22222211 223467777889999999888765 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 131 VNSKLVNELADAKVSAKRYMQDYEKE 156 (531)
Q Consensus 131 ln~KL~~ELae~Kss~~~a~kelE~E 156 (531)
--+| |+..+.+..+..+||..-
T Consensus 81 EKrk----LAqLQ~AY~~LfqeYd~~ 102 (130)
T 3cl3_D 81 EKRK----LAQLQVAYHQLFQEYDNH 102 (130)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHH
Confidence 2233 567788888888888873
No 42
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=59.70 E-value=71 Score=28.29 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 134 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 134 (531)
.+|-.|+.|++.-+..+..|..|.+..-.. |. ..|-.|..||+.=|+.++.+-.-|..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~q---l~-------------------~~i~~Le~eL~e~r~~~q~a~~e~e~ 72 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQ---LK-------------------GHVSELEADLAEQQHLRQQAADDCEF 72 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999998887765433 32 33444566666666666666666666
Q ss_pred HHHHHHHH
Q 009584 135 LVNELADA 142 (531)
Q Consensus 135 L~~ELae~ 142 (531)
|-.|+.+.
T Consensus 73 Lr~e~~~l 80 (120)
T 3i00_A 73 LRAELDEL 80 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666644
No 43
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.07 E-value=45 Score=30.37 Aligned_cols=44 Identities=36% Similarity=0.425 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Q 009584 137 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAE 180 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaE 180 (531)
.+|+.+..-+.+...+|..|+..|.-.|.....+-.++.+.-|-
T Consensus 39 ~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 39 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788889999999999999999998888777766443
No 44
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=57.30 E-value=97 Score=26.91 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
|..|+..|+.+-..-..|..+....+-.++.|..++.+|...+ ..+.+.|..+|..++++--.|--+|.--.-|.
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r-----~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR-----EEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 4555555555554445555555667777888888888876644 34556667777777766555544444333444
Q ss_pred HHH
Q 009584 137 NEL 139 (531)
Q Consensus 137 ~EL 139 (531)
.||
T Consensus 97 eEl 99 (119)
T 3ol1_A 97 EEI 99 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 45
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=56.25 E-value=1e+02 Score=26.89 Aligned_cols=67 Identities=24% Similarity=0.279 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 009584 113 DLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR 186 (531)
Q Consensus 113 slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKr 186 (531)
.|...|..|+-+-.-+|-...+|...-.+...-+.-+-..++. .|+.+++|...-...+.++..|+.
T Consensus 52 ~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee-------eee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 52 DLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED-------EEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554444444433333333333 334444444444444444444444
No 46
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=55.20 E-value=2.2e+02 Score=31.13 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-------------HHHH--HHHHHHHHHHHHHHHH
Q 009584 105 EKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRY-------------MQDY--EKERKERELIEEVCDE 169 (531)
Q Consensus 105 eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a-------------~kel--E~ERkaRellE~vCdE 169 (531)
.+...+++++|.+|+. +|..|+.-+++++. |-++ +.-| .+-.-.=..++..-|+
T Consensus 345 ~~t~~~~~~~~~~~~~----------~n~~~~~~~~~~~~-f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~ 413 (551)
T 2b5u_A 345 AKAVQVYNSRKSELDA----------ANKTLADAIAEIKQ-FNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDA 413 (551)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-HGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHh----------hhhHHHHHHHhhhh-hhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHH
Confidence 5666888999999854 88888888876542 2110 0112 1111112355677788
Q ss_pred HHHhhhccHHHHHH
Q 009584 170 LAKEIGEDKAEVEA 183 (531)
Q Consensus 170 LAkeI~edkaEVe~ 183 (531)
+++++.++++++-.
T Consensus 414 ~~~~~s~~~~~ls~ 427 (551)
T 2b5u_A 414 AAKEKSDADAALSS 427 (551)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhh
Confidence 88888777776543
No 47
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.21 E-value=1.4e+02 Score=27.76 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 135 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 135 (531)
+|+.++++++ .|..|..|....+.+|..|---+ .=|+|--+.+++.+.+++-++..=-...++++.-|..|
T Consensus 59 ~vs~~~~~~~----~I~~L~~El~~l~~ki~dLeeel-----~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 59 IVSHDDALLN----TLAILQKELKSKEQEIRRLKEVI-----ALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHH----HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665543 77778777777777655543222 22566677888888888888877666667788888888
Q ss_pred HHHHHHHH
Q 009584 136 VNELADAK 143 (531)
Q Consensus 136 ~~ELae~K 143 (531)
+.=+-.-|
T Consensus 130 V~RWM~rk 137 (152)
T 3a7p_A 130 VARWLKKT 137 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665433
No 48
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=52.95 E-value=1.8e+02 Score=28.80 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccH----HHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHh
Q 009584 152 DYEKERKERELIEEVCDELAKEIGEDK----AEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQK 227 (531)
Q Consensus 152 elE~ERkaRellE~vCdELAkeI~edk----aEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK 227 (531)
.-|+||+-|++-...-++|..+|+-.. -+.+.|+.......+.++.|+-+||- ++-..+++|
T Consensus 161 K~e~Er~~rEin~s~ike~veerkrl~~kQ~k~qEkL~~~h~e~le~l~~e~~k~~~--------------~~~~~~q~~ 226 (251)
T 1jad_A 161 KAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQ--------------EAVAEYEEK 226 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--------------HHHHHHHHH
Confidence 345666666766666666666665432 23455565566666666666655542 233334444
Q ss_pred hHHHHHHHHHHHHHHhh
Q 009584 228 YSQMNKLVAELEAFLSS 244 (531)
Q Consensus 228 ~s~ldkL~~elE~FL~s 244 (531)
. ..|-+||..|++.
T Consensus 227 ~---~~l~~ei~e~~~~ 240 (251)
T 1jad_A 227 L---KTLTVEVQEMVKN 240 (251)
T ss_dssp H---HHHHHHHHHHHHH
T ss_pred H---hcChHHHHHHHHH
Confidence 3 4455588777754
No 49
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=51.54 E-value=1.6e+02 Score=27.59 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=26.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 122 RKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKE 159 (531)
Q Consensus 122 Rk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERka 159 (531)
++.||..+....|+.++|.++...+.++.+.|+.--+.
T Consensus 115 ~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e 152 (305)
T 2efl_A 115 KQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKE 152 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777888888888777777777766654433
No 50
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=51.44 E-value=95 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKK 83 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~ 83 (531)
+.+|+.|++.|..++.++.+.-....+
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~ 34 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999888876554443
No 51
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=49.53 E-value=2.2e+02 Score=28.82 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=68.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhH
Q 009584 121 ERKNRQRIEIVNSKLVNELADAK-VSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDER 199 (531)
Q Consensus 121 ERk~Rkr~E~ln~KL~~ELae~K-ss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER 199 (531)
=++.||..+....||.+++..+- ..+.++.+.|+.--+.-+....-..+.+++ .+++.++.+..+....+..-+
T Consensus 110 ~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~-----ke~eK~~~k~~k~~~~~~~a~ 184 (406)
T 4dyl_A 110 RQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKD-----KDRDKAKDKYVRSLWKLFAHH 184 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-----chHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888887666 566666666654433322222222222221 455555555555544443222
Q ss_pred ----HHHHHHHhhHHHhhhhhhhh---hhhhhHHhhHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhhcccccc
Q 009584 200 ----KMLQMAEVWREERVQMKLVD---AKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQE 271 (531)
Q Consensus 200 ----~MLqmAEvWREERVQMKL~d---Ak~~leeK~s~ldkL~~elE~FL~sk~~~~d~~~~r~a~~~rqs~~Sv~~~~ 271 (531)
..|..+..|....-+--+-+ .=-.|++. -+..|..=|-.|...-... ......--+.+++++++++...
T Consensus 185 neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~--Ri~~lk~~L~~~~~~~~~~-~~~~~~~~~~l~~~i~~id~~~ 260 (406)
T 4dyl_A 185 NRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEE--MACILKEILQEYLEISSLV-QDEVVAIHREMAAAAARIQPEA 260 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHcCcHH
Confidence 23444444554433322222 11233332 2334555555555542221 2222223367889999886653
No 52
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=47.33 E-value=2e+02 Score=27.66 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISR 120 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ 120 (531)
.-+..|..+|...+.++.+|...-.+...+++.+.|+...|+...+.--.+++-..|-.+-+-|+.
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnler 124 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFER 124 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 336788899999999999998888888889999999999988877777777766666666666653
No 53
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=46.88 E-value=1.9e+02 Score=27.19 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009584 104 HEKIRAFIDDLKAEISRERKNRQRIEI 130 (531)
Q Consensus 104 ~eki~a~i~slk~ELe~ERk~Rkr~E~ 130 (531)
.+.+..-+..|+..|+.||+.|.+..-
T Consensus 64 k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555666655555444
No 54
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.26 E-value=45 Score=34.64 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHFLR 90 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~K 90 (531)
..|+.||...+.++++|+++.+..+.+++.+-.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889988888888888876666555444433
No 55
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=42.60 E-value=1.4e+02 Score=25.74 Aligned_cols=84 Identities=23% Similarity=0.308 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 009584 164 EEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 243 (531)
Q Consensus 164 E~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~ 243 (531)
-.+|..|+|+-.-|+.|+........++..+-..|--+|.-.+.- |.+.+--|.+=..-|.....+|+.||.
T Consensus 10 tg~vkRL~KE~~~Y~kE~~~q~~riek~k~~~~~dey~iKkq~ev--------l~Et~~mipd~~~Rl~~a~~~L~~~l~ 81 (106)
T 1qsd_A 10 VKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEV--------LDDTKRLLPTLYEKIREFKEDLEQFLK 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 356777778777888888777777776655422022333333322 334444455555566777788888994
Q ss_pred hcCCCCchhHHHHHH
Q 009584 244 SRSINPDIQEMKEAE 258 (531)
Q Consensus 244 sk~~~~d~~~~r~a~ 258 (531)
.-. +..++..|.
T Consensus 82 ~~~---~~ee~~~Ak 93 (106)
T 1qsd_A 82 TYQ---GTEDVSDAR 93 (106)
T ss_dssp TCC---SSSCCHHHH
T ss_pred hcc---CcHHHHHHH
Confidence 322 224445553
No 56
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.54 E-value=20 Score=31.18 Aligned_cols=75 Identities=25% Similarity=0.259 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhH---HHHHHHHhhHHHhhhhhhhhhhhhhHHh
Q 009584 151 QDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDER---KMLQMAEVWREERVQMKLVDAKVAVEQK 227 (531)
Q Consensus 151 kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER---~MLqmAEvWREERVQMKL~dAk~~leeK 227 (531)
.+|...|+.-+-|+.-|+.|.+++..++.+++..- ++. +.+. ++|||. .-=|-.+.+..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~-----l~G--d~~~~~TKVlH~~-----------~NPa~~a~~~~ 73 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA-----LQG--DYDQSRTKVLHMS-----------LNPTSVARQRL 73 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----CCS--CCCTTTEEEEEES-----------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcc--ccCCccCeeeeec-----------CChHHHHHHHH
Confidence 36666777777777777788877777777765410 111 2333 677776 22333334444
Q ss_pred hHHHHHHHHHHHHHHh
Q 009584 228 YSQMNKLVAELEAFLS 243 (531)
Q Consensus 228 ~s~ldkL~~elE~FL~ 243 (531)
-..+++|+.|+|.--.
T Consensus 74 ~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 74 REDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4789999999987543
No 57
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=37.79 E-value=1.1e+02 Score=26.33 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 009584 145 SAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 191 (531)
Q Consensus 145 s~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~ 191 (531)
-+.=|-.|.+.||.+|+-+ +.++.++...++.|.++..++
T Consensus 48 Qv~IY~~DF~aERadREkl-------~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 48 QADIYKADFQAERHAREKL-------VEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999864 556666666666666654443
No 58
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=36.16 E-value=46 Score=27.40 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAA 98 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~a 98 (531)
|--+..||+.+|+.|+.|++|--..+-.+=+|---||-||.+
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAkerks 69 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKEKKS 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 667889999999999999999877777777777777766544
No 59
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=35.09 E-value=68 Score=28.18 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFL 89 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~ 89 (531)
+-+.||..||..++.+|.+|.++-...+-.++.|-
T Consensus 4 ~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 4 GSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999998887766666555543
No 60
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.56 E-value=99 Score=31.87 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKK 84 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~e 84 (531)
|.+|+.||...+..+.+|+++-...+.+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555555544444433
No 61
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.72 E-value=4e+02 Score=26.82 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=17.9
Q ss_pred hhhccHHHHHHHHHhhHHHHhhhhhhH
Q 009584 173 EIGEDKAEVEALKRESMKLREEVDDER 199 (531)
Q Consensus 173 eI~edkaEVe~lKres~k~reE~eeER 199 (531)
.|.+.+.||-.|.++....+.++++-|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777777777777666666665443
No 62
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=32.47 E-value=3.4e+02 Score=29.43 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Q 009584 110 FIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAE 180 (531)
Q Consensus 110 ~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaE 180 (531)
-|.-|++.++.||+. -++..++-|..-|.| .++--++-..+-.+.|-.+|.+.+..
T Consensus 527 ~~~ql~~kme~~~~~--~~~e~~~~~~~~~~~-------------~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 527 HLKQLTEKMENDRVQ--LLKEQERTLALKLQE-------------QEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-------------HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777763 234444444444432 22333344455556666666666554
No 63
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=32.34 E-value=90 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009584 114 LKAEISRERKNRQRIEIVNSKLVNELA 140 (531)
Q Consensus 114 lk~ELe~ERk~Rkr~E~ln~KL~~ELa 140 (531)
++.=|+.|.|+|+++|.+=+|+.+...
T Consensus 26 ~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 26 MKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344688899999999999999977654
No 64
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.29 E-value=2.9e+02 Score=24.72 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=32.2
Q ss_pred hhhHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 009584 53 AVSMVAAL--EAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEK 96 (531)
Q Consensus 53 ~~Slv~aL--k~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK 96 (531)
.++++.|| --||-.++.++.+|+++-....+++..|-..+..-+
T Consensus 57 r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~ 102 (138)
T 3hnw_A 57 LRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQ 102 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555654 468899999999998888888888777776655443
No 65
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.69 E-value=3.6e+02 Score=25.65 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhH---HHHHHHHHhhHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERR----SSK---KKLEHFLRKVSEEKAAWRSREHEKI---RAFIDDLKAEISRER 122 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~----s~k---~eie~l~KqlaEEK~awKskE~eki---~a~i~slk~ELe~ER 122 (531)
+..|+.||+.=+..=++|++|-. ... +++..-..++..|...||.|-..-- ...+..+.+||..=|
T Consensus 26 ~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 26 FQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999988888888887752 222 2344445566788888887754332 123555555555333
No 66
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=30.69 E-value=5.6e+02 Score=27.89 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHhhH---HHhhhhhhhhhhhhhHHhh-HHHHHHHHHHHHHHhhc
Q 009584 196 DDERKMLQMAEVWR---EERVQMKLVDAKVAVEQKY-SQMNKLVAELEAFLSSR 245 (531)
Q Consensus 196 eeER~MLqmAEvWR---EERVQMKL~dAk~~leeK~-s~ldkL~~elE~FL~sk 245 (531)
+-++..-||+.-.. ..||.--+...+..+++|. ..++..+.+|+.-+.-+
T Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 653 (695)
T 2j69_A 600 ELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQK 653 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778874444 4677766767776777764 45667777777777764
No 67
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=30.40 E-value=1.2e+02 Score=32.75 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHhhhccHHHHHHHHHhhHH
Q 009584 169 ELAKEIGEDKAEVEALKRESMK 190 (531)
Q Consensus 169 ELAkeI~edkaEVe~lKres~k 190 (531)
.|+.++.++.++|..|..++.+
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~ 430 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVEL 430 (575)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777766554
No 68
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.59 E-value=66 Score=24.74 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 009584 53 AVSMVAALEAEVEQARTRIQELETERRSSKKKL 85 (531)
Q Consensus 53 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~ei 85 (531)
+.+=|-+|+.|++..|.+|.+|.++....+.++
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999998877666554
No 69
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=29.36 E-value=2e+02 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=19.7
Q ss_pred HHHHHHhhhccHHHHHHHHHhhHHHHh
Q 009584 167 CDELAKEIGEDKAEVEALKRESMKLRE 193 (531)
Q Consensus 167 CdELAkeI~edkaEVe~lKres~k~re 193 (531)
..++-..|.+..+||+.|+.+-..++.
T Consensus 60 ~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 60 SKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344467788899999999987665543
No 70
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.15 E-value=5.8e+02 Score=27.65 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH----hhHHHHhhhhhhHH-H
Q 009584 134 KLVNELADAKVSAKR-------YMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR----ESMKLREEVDDERK-M 201 (531)
Q Consensus 134 KL~~ELae~Kss~~~-------a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKr----es~k~reE~eeER~-M 201 (531)
..-++...+..++.+ .-|+++.||..++.+|.-...|..-..+.++-++.-++ ....+.+.+|+||+ +
T Consensus 463 ~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~ 542 (592)
T 1f5n_A 463 TYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQL 542 (592)
T ss_dssp HHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555533 45678888999999998888888776666555555322 22334455777777 4
Q ss_pred HHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 009584 202 LQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 243 (531)
Q Consensus 202 LqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~ 243 (531)
++=-+.-.+.++|.+-.-.+.+|.+|... |+.||+.+=+
T Consensus 543 ~~e~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~ei~~l~~ 581 (592)
T 1f5n_A 543 LKEQERTLALKLQEQEQLLKEGFQKESRI---MKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 44455555566555444444456665544 4445544433
No 71
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.60 E-value=4.7e+02 Score=28.77 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009584 81 SKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 139 (531)
Q Consensus 81 ~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 139 (531)
+.++++.+++++-+. |+.+... ..-.+....|+..| ||++.+.|..++-.-|
T Consensus 79 nsKdseqy~k~~~E~---Lr~rq~q--~~dNdNtynE~S~E--LRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 79 NNKDSHSLTTNIMEI---LRGDFSS--ANNRDNTYNRVSED--LRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHT---TSSHHHH--HHHHHHHHHHTTHH--HHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHH---HHHHHHh--hhccchhHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 555666666665554 2221111 11333334444332 5666666666665555
No 72
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=28.23 E-value=3.6e+02 Score=24.86 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcccc
Q 009584 256 EAEMLRQAAASVNI 269 (531)
Q Consensus 256 ~a~~~rqs~~Sv~~ 269 (531)
..+.++++++.++.
T Consensus 236 ~~~~~~~~~~~id~ 249 (276)
T 2v0o_A 236 VHEEFINNMANTTV 249 (276)
T ss_dssp HHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhCCH
Confidence 44677888888854
No 73
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=28.18 E-value=3.7e+02 Score=25.07 Aligned_cols=40 Identities=10% Similarity=0.167 Sum_probs=30.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 120 RERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKE 159 (531)
Q Consensus 120 ~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERka 159 (531)
+=++.||+.+....|+.++|.++-..+.++.+.|+.--+.
T Consensus 106 ~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e 145 (301)
T 2efk_A 106 EMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE 145 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888888899999888888888877777765443
No 74
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.68 E-value=3.6e+02 Score=24.07 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 009584 106 KIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALK 185 (531)
Q Consensus 106 ki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lK 185 (531)
-|=+||. +.+||-..++--..++.....+.+|+.+.|.-+..+--.+|. +-+++.+++.++.+|.
T Consensus 59 aVLaALN-iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~--------------~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 59 TDMMYLN-IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAES--------------SAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 3445554 667777777777777777777778887777666655444433 3444555556666666
Q ss_pred HhhHHHHhhh
Q 009584 186 RESMKLREEV 195 (531)
Q Consensus 186 res~k~reE~ 195 (531)
.+..++..++
T Consensus 124 ~~~~~le~~~ 133 (138)
T 3hnw_A 124 KNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555543333
No 75
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.52 E-value=2.8e+02 Score=22.80 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 009584 106 KIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALK 185 (531)
Q Consensus 106 ki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lK 185 (531)
....-+..+++.|+.+-+.|+.+|.-+.+|..|-.+.... -.=+|+.|+.|...-.+.+..+..|.
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q--------------l~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS--------------MKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567789999999999999999999998888765544 23346777777777666666666653
No 76
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=25.33 E-value=3.1e+02 Score=23.59 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 009584 65 EQARTRIQELETERRSSKKKLEHFLRKVS 93 (531)
Q Consensus 65 ~~Ar~rI~eL~~E~~s~k~eie~l~Kqla 93 (531)
--.-.-|+.|.+|..+|+++++..-.++.
T Consensus 10 kIkt~~vkRL~KE~~~Y~kE~~~q~~rie 38 (108)
T 1h7c_A 10 KIKTGVVRRLVKERVMYEKEAKQQEEKIE 38 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888888887766555443
No 77
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.12 E-value=3.9e+02 Score=23.98 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAA 98 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~a 98 (531)
.-|+.+|-+|+.-.++-+++--+-.+-+..|+.-|.+||+.
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999888888877777788899999988888774
No 78
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.40 E-value=6.7e+02 Score=26.41 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=10.8
Q ss_pred HHHHHHHhhhHHHHHHHHHhhHHHH
Q 009584 72 QELETERRSSKKKLEHFLRKVSEEK 96 (531)
Q Consensus 72 ~eL~~E~~s~k~eie~l~KqlaEEK 96 (531)
.++.+.++...++.+..+-++++|-
T Consensus 94 ~~~lk~~~~q~~dndn~~~e~s~eL 118 (390)
T 1deq_A 94 VELMRGDFAKANNNDNTFKQINEDL 118 (390)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHH
Confidence 3334444444444444444444443
No 79
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.35 E-value=3.7e+02 Score=23.34 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009584 61 EAEVEQARTRIQELETERRSSKKKLEHFLR 90 (531)
Q Consensus 61 k~EL~~Ar~rI~eL~~E~~s~k~eie~l~K 90 (531)
...|..++..|.+|-+.-++..-+|+.+..
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLS 59 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666655555555555543
No 80
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.15 E-value=5.8e+02 Score=25.60 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHH
Q 009584 163 IEEVCDELAKEIGEDKAEVEALKR 186 (531)
Q Consensus 163 lE~vCdELAkeI~edkaEVe~lKr 186 (531)
+|.-..+|-.+|.+.+|+|+++|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 448 LEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444566667777777777663
No 81
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.54 E-value=6.2e+02 Score=27.02 Aligned_cols=17 Identities=29% Similarity=0.747 Sum_probs=11.6
Q ss_pred CCCCCCCCCcccccccc
Q 009584 344 GDIEEDESGWETVSHLE 360 (531)
Q Consensus 344 ~~~eeD~sgWETvSh~E 360 (531)
||.+-++.||-.|-+--
T Consensus 245 CDm~t~ggGWtViQrR~ 261 (464)
T 1m1j_B 245 CDMETDNGGWTLIQNRQ 261 (464)
T ss_dssp EECSGGGSCEEEEEEES
T ss_pred eecccCCCCeEEEEEee
Confidence 44556788998887654
No 82
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.16 E-value=1.8e+02 Score=22.41 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 129 EIVNSKLVNELADAKVSAKRYMQDYE 154 (531)
Q Consensus 129 E~ln~KL~~ELae~Kss~~~a~kelE 154 (531)
-.-|.||+.-|.+++.-+.+.-.+++
T Consensus 22 ~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 22 AARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33488888888766655555544443
No 83
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.75 E-value=3.4e+02 Score=22.31 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 009584 105 EKIRAFIDDLKAEISRERKNRQRI 128 (531)
Q Consensus 105 eki~a~i~slk~ELe~ERk~Rkr~ 128 (531)
+.+......+..-|..||-+..++
T Consensus 35 ee~~~~~~~lek~L~~E~~LK~QA 58 (71)
T 1s1c_X 35 EEISNLKAAFEKNINTERTLKTQA 58 (71)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455567778888888776653
No 84
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.69 E-value=2.9e+02 Score=23.20 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHhhHHHHHHhhh
Q 009584 52 SAVSMVAALEAEVEQARTRIQELETERRSSKK---KLEHFLRKVSEEKAAWRS 101 (531)
Q Consensus 52 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~---eie~l~KqlaEEK~awKs 101 (531)
..|--|.-|++|++.-+..-..|.++.+..+. .++.=-.++.+|..+|..
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555777777777777776666666654333 355556788899999964
No 85
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.19 E-value=8.4e+02 Score=26.73 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhhc
Q 009584 195 VDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSR 245 (531)
Q Consensus 195 ~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~sk 245 (531)
++-..+|-||+- |--.|-|-.|--++.+|..-....+.-.++|-.-|..|
T Consensus 383 ~~~Gh~~w~~~~-~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~R 432 (551)
T 2b5u_A 383 MAGGHRMWQMAG-LKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESR 432 (551)
T ss_dssp TSTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhcc-chhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 466679999986 88888887776666666554444455555665555554
No 86
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.69 E-value=80 Score=22.71 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHH
Q 009584 163 IEEVCDELAKEIGEDKAEVEALKR 186 (531)
Q Consensus 163 lE~vCdELAkeI~edkaEVe~lKr 186 (531)
||+=++||-.+-.+.++||..||.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 577788888888888888888873
No 87
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=20.59 E-value=6.5e+02 Score=26.72 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhh
Q 009584 161 ELIEEVCDELAKEI 174 (531)
Q Consensus 161 ellE~vCdELAkeI 174 (531)
+.++..|+++-.-+
T Consensus 563 ~~~~~~~~~~~~~l 576 (605)
T 4b9q_A 563 TAIESALTALETAL 576 (605)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 88
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.02 E-value=5.2e+02 Score=23.87 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=14.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009584 123 KNRQRIEIVNSKLVNELADAKVSAKRY 149 (531)
Q Consensus 123 k~Rkr~E~ln~KL~~ELae~Kss~~~a 149 (531)
++-+.++.+..+|.++|.+++.-+.-+
T Consensus 92 ~l~~~~e~lr~~l~kdlEelr~kL~P~ 118 (191)
T 1nfn_A 92 RLSKELQAAQARLGADMEDVCGRLVQY 118 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344555566666666666555443333
Done!