Query 009585
Match_columns 531
No_of_seqs 399 out of 1704
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 14:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11784 tRNA 2-selenouridine 99.9 2.3E-22 5E-27 209.7 13.7 181 273-503 4-208 (345)
2 TIGR03167 tRNA_sel_U_synt tRNA 99.9 3.5E-21 7.6E-26 198.4 13.1 178 286-501 2-193 (311)
3 PLN02723 3-mercaptopyruvate su 99.8 2.8E-20 6E-25 191.9 12.1 217 159-402 22-318 (320)
4 PRK11493 sseA 3-mercaptopyruva 99.8 4E-20 8.6E-25 186.9 10.5 215 160-402 6-280 (281)
5 COG2897 SseA Rhodanese-related 99.8 8.8E-20 1.9E-24 185.8 11.7 217 159-402 11-283 (285)
6 cd01533 4RHOD_Repeat_2 Member 99.8 1.3E-19 2.8E-24 157.6 9.8 99 270-396 10-109 (109)
7 PRK09629 bifunctional thiosulf 99.8 3.7E-19 8E-24 197.8 12.3 216 160-402 10-272 (610)
8 cd01518 RHOD_YceA Member of th 99.8 4.4E-19 9.5E-24 152.1 9.3 99 271-394 3-101 (101)
9 cd01527 RHOD_YgaP Member of th 99.8 1.2E-18 2.6E-23 148.4 9.8 97 271-399 3-99 (99)
10 cd01534 4RHOD_Repeat_3 Member 99.8 1.6E-18 3.5E-23 147.2 8.9 93 272-393 1-94 (95)
11 PRK00162 glpE thiosulfate sulf 99.8 1.8E-18 3.9E-23 150.2 9.3 101 270-401 5-105 (108)
12 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.9E-18 4.2E-23 152.4 9.5 110 272-396 2-122 (122)
13 cd01523 RHOD_Lact_B Member of 99.8 2.4E-18 5.3E-23 147.0 9.8 99 272-393 1-99 (100)
14 cd01519 RHOD_HSP67B2 Member of 99.8 1.1E-18 2.4E-23 149.6 7.5 104 273-393 2-105 (106)
15 PLN02160 thiosulfate sulfurtra 99.8 2.6E-18 5.7E-23 157.1 10.2 113 270-402 15-129 (136)
16 cd01449 TST_Repeat_2 Thiosulfa 99.7 2.8E-18 6.1E-23 150.0 7.8 106 272-393 1-117 (118)
17 cd01521 RHOD_PspE2 Member of t 99.7 8.4E-18 1.8E-22 146.9 10.3 100 270-399 8-110 (110)
18 cd01526 RHOD_ThiF Member of th 99.7 5.4E-18 1.2E-22 150.8 8.4 110 269-398 7-117 (122)
19 PRK11493 sseA 3-mercaptopyruva 99.7 1.4E-17 3E-22 168.4 11.5 121 271-406 6-140 (281)
20 cd01444 GlpE_ST GlpE sulfurtra 99.7 1E-17 2.2E-22 141.0 8.6 93 271-393 1-95 (96)
21 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 1.6E-17 3.4E-22 156.4 10.5 110 270-399 36-162 (162)
22 cd01525 RHOD_Kc Member of the 99.7 1.7E-17 3.6E-22 142.3 9.3 101 272-393 1-104 (105)
23 smart00450 RHOD Rhodanese Homo 99.7 1.4E-17 3E-22 137.7 8.1 99 284-398 2-100 (100)
24 cd01520 RHOD_YbbB Member of th 99.7 2.7E-17 5.8E-22 147.9 10.5 105 272-394 1-126 (128)
25 cd01528 RHOD_2 Member of the R 99.7 2.8E-17 6E-22 140.9 9.8 97 271-394 1-98 (101)
26 PF00581 Rhodanese: Rhodanese- 99.7 3.1E-17 6.7E-22 140.0 9.5 108 273-395 1-113 (113)
27 PLN02723 3-mercaptopyruvate su 99.7 1.9E-17 4.2E-22 170.8 9.6 120 270-404 22-154 (320)
28 cd01447 Polysulfide_ST Polysul 99.7 3.3E-17 7.1E-22 139.3 8.5 102 272-396 1-103 (103)
29 PRK09629 bifunctional thiosulf 99.7 5.9E-17 1.3E-21 180.3 12.2 121 270-405 9-133 (610)
30 PRK07878 molybdopterin biosynt 99.7 2.3E-17 4.9E-22 174.8 8.4 180 188-398 183-387 (392)
31 cd01445 TST_Repeats Thiosulfat 99.7 3.8E-17 8.2E-22 149.8 8.8 108 272-393 1-137 (138)
32 PRK07411 hypothetical protein; 99.7 3.9E-17 8.5E-22 173.0 9.5 182 189-399 176-386 (390)
33 cd01535 4RHOD_Repeat_4 Member 99.7 5.4E-17 1.2E-21 150.1 9.0 98 277-404 2-99 (145)
34 cd01524 RHOD_Pyr_redox Member 99.7 6.1E-17 1.3E-21 136.2 8.4 89 272-393 1-89 (90)
35 cd01530 Cdc25 Cdc25 phosphatas 99.7 1.8E-16 4E-21 141.9 9.2 99 271-393 3-120 (121)
36 cd01529 4RHOD_Repeats Member o 99.7 1.7E-16 3.7E-21 134.8 8.2 86 284-393 10-95 (96)
37 KOG1530 Rhodanese-related sulf 99.7 1.5E-16 3.2E-21 144.5 7.8 116 267-400 20-135 (136)
38 cd01522 RHOD_1 Member of the R 99.7 1.4E-16 3E-21 141.3 7.5 103 272-394 1-104 (117)
39 COG0607 PspE Rhodanese-related 99.7 2.8E-16 6.2E-21 134.5 8.7 96 279-402 13-109 (110)
40 cd01532 4RHOD_Repeat_1 Member 99.7 2.3E-16 4.9E-21 133.9 7.9 84 283-394 7-92 (92)
41 PRK08762 molybdopterin biosynt 99.7 6.1E-16 1.3E-20 162.8 12.9 107 270-406 3-109 (376)
42 KOG2017 Molybdopterin synthase 99.6 2.6E-16 5.7E-21 162.1 5.7 184 183-395 196-419 (427)
43 cd01531 Acr2p Eukaryotic arsen 99.6 1.7E-15 3.6E-20 132.8 9.2 100 271-395 3-112 (113)
44 COG2897 SseA Rhodanese-related 99.6 1.3E-15 2.7E-20 155.5 9.4 126 271-410 12-147 (285)
45 PRK05597 molybdopterin biosynt 99.6 4E-16 8.6E-21 163.4 4.6 172 189-394 166-354 (355)
46 cd00158 RHOD Rhodanese Homolog 99.6 1.9E-15 4.2E-20 123.7 7.2 87 278-393 3-89 (89)
47 TIGR02981 phageshock_pspE phag 99.6 3.6E-15 7.9E-20 130.3 8.4 81 285-394 17-97 (101)
48 PRK01415 hypothetical protein; 99.6 5E-15 1.1E-19 148.5 10.1 100 271-395 113-212 (247)
49 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 5E-15 1.1E-19 129.9 8.2 98 271-393 3-112 (113)
50 PRK05320 rhodanese superfamily 99.6 1.1E-14 2.4E-19 146.8 9.7 102 270-395 110-216 (257)
51 PRK10287 thiosulfate:cyanide s 99.5 1.1E-14 2.4E-19 128.1 7.6 81 285-394 19-99 (104)
52 PRK00142 putative rhodanese-re 99.5 2.5E-14 5.5E-19 147.9 10.0 101 270-395 112-212 (314)
53 PRK05600 thiamine biosynthesis 99.5 6.3E-15 1.4E-19 155.4 4.8 170 189-390 182-369 (370)
54 cd01446 DSP_MapKP N-terminal r 99.4 7.5E-13 1.6E-17 119.0 9.9 106 271-394 1-126 (132)
55 KOG1529 Mercaptopyruvate sulfu 99.1 3.3E-10 7.1E-15 115.1 10.0 123 271-405 6-140 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.0 6.6E-10 1.4E-14 121.1 7.2 73 285-387 406-482 (482)
57 COG1054 Predicted sulfurtransf 98.9 2.1E-09 4.5E-14 109.9 5.7 100 271-395 114-213 (308)
58 KOG1529 Mercaptopyruvate sulfu 98.8 1.4E-08 3E-13 103.4 9.6 94 285-394 171-275 (286)
59 KOG3772 M-phase inducer phosph 98.5 2.5E-07 5.5E-12 96.0 6.7 103 270-395 156-276 (325)
60 COG2603 Predicted ATPase [Gene 98.4 5.4E-07 1.2E-11 92.2 8.5 165 285-500 14-200 (334)
61 COG5105 MIH1 Mitotic inducer, 97.2 0.00063 1.4E-08 70.9 6.2 99 269-394 241-357 (427)
62 TIGR01244 conserved hypothetic 92.7 0.34 7.3E-06 44.5 6.7 111 270-401 13-130 (135)
63 PF04273 DUF442: Putative phos 92.3 0.13 2.8E-06 46.2 3.3 88 269-373 12-105 (110)
64 cd01445 TST_Repeats Thiosulfat 91.0 0.54 1.2E-05 43.3 6.0 98 161-269 1-124 (138)
65 PF05237 MoeZ_MoeB: MoeZ/MoeB 87.4 0.077 1.7E-06 45.0 -2.2 46 189-237 3-48 (84)
66 KOG1093 Predicted protein kina 85.0 0.37 8E-06 54.2 1.0 97 270-392 622-718 (725)
67 KOG1717 Dual specificity phosp 84.8 0.74 1.6E-05 47.7 3.0 100 272-394 6-123 (343)
68 PRK00142 putative rhodanese-re 83.5 0.16 3.4E-06 53.3 -2.5 53 268-330 12-64 (314)
69 PF13350 Y_phosphatase3: Tyros 82.3 5.6 0.00012 37.2 7.6 99 268-380 26-152 (164)
70 KOG3636 Uncharacterized conser 79.1 6.3 0.00014 43.7 7.5 91 286-393 326-427 (669)
71 PRK07688 thiamine/molybdopteri 76.3 0.54 1.2E-05 49.8 -1.4 115 189-307 164-318 (339)
72 cd00127 DSPc Dual specificity 75.9 8.7 0.00019 34.0 6.5 27 353-379 80-109 (139)
73 KOG0781 Signal recognition par 66.4 27 0.00059 39.3 8.7 106 72-189 271-385 (587)
74 PF01442 Apolipoprotein: Apoli 60.6 1.3 2.8E-05 41.1 -2.3 10 167-176 110-119 (202)
75 PF01451 LMWPc: Low molecular 56.9 7.6 0.00016 35.0 2.1 36 357-392 1-41 (138)
76 TIGR03167 tRNA_sel_U_synt tRNA 53.9 23 0.0005 37.4 5.4 33 271-304 137-172 (311)
77 smart00195 DSPc Dual specifici 53.9 42 0.0009 29.9 6.4 28 352-379 76-106 (138)
78 PF09992 DUF2233: Predicted pe 51.8 20 0.00044 33.5 4.2 41 352-392 98-143 (170)
79 COG2519 GCD14 tRNA(1-methylade 46.9 24 0.00053 36.4 4.1 33 352-384 186-218 (256)
80 PRK08223 hypothetical protein; 46.4 12 0.00025 39.2 1.8 16 183-198 160-175 (287)
81 cd01448 TST_Repeat_1 Thiosulfa 45.9 19 0.00041 31.4 2.8 96 163-269 4-106 (122)
82 PF03853 YjeF_N: YjeF-related 45.8 33 0.00071 32.6 4.6 50 352-402 23-87 (169)
83 smart00226 LMWPc Low molecular 45.7 21 0.00045 32.3 3.1 36 357-392 1-37 (140)
84 PF05706 CDKN3: Cyclin-depende 42.6 59 0.0013 31.7 5.8 80 289-378 75-159 (168)
85 COG0062 Uncharacterized conser 42.5 41 0.00089 33.6 4.9 31 354-385 49-82 (203)
86 PLN02727 NAD kinase 42.5 40 0.00087 40.7 5.5 84 270-367 267-354 (986)
87 PF00782 DSPc: Dual specificit 42.3 48 0.001 29.2 4.9 29 352-380 71-102 (133)
88 cd01449 TST_Repeat_2 Thiosulfa 39.9 69 0.0015 27.5 5.4 91 163-269 3-104 (118)
89 PRK08762 molybdopterin biosynt 38.0 1.1E+02 0.0024 32.7 7.7 43 353-396 134-176 (376)
90 PLN03050 pyridoxine (pyridoxam 38.0 47 0.001 33.9 4.6 30 355-385 61-93 (246)
91 PF02590 SPOUT_MTase: Predicte 36.7 98 0.0021 29.5 6.3 45 348-392 61-110 (155)
92 PRK10126 tyrosine phosphatase; 34.4 43 0.00093 31.0 3.4 37 355-392 3-40 (147)
93 TIGR00197 yjeF_nterm yjeF N-te 33.9 64 0.0014 31.7 4.7 33 352-385 43-78 (205)
94 PRK01565 thiamine biosynthesis 32.4 62 0.0013 35.0 4.7 30 353-383 175-204 (394)
95 PRK10565 putative carbohydrate 32.2 63 0.0014 36.3 4.9 33 352-385 58-93 (508)
96 TIGR02689 ars_reduc_gluta arse 31.4 79 0.0017 28.4 4.5 35 356-390 2-37 (126)
97 PF05957 DUF883: Bacterial pro 30.5 64 0.0014 27.7 3.6 49 70-118 6-54 (94)
98 PRK11391 etp phosphotyrosine-p 29.9 58 0.0013 30.2 3.5 37 355-392 3-40 (144)
99 TIGR00342 thiazole biosynthesi 29.7 80 0.0017 33.9 4.9 30 353-383 171-200 (371)
100 PLN03049 pyridoxine (pyridoxam 29.2 77 0.0017 35.3 4.8 44 355-399 60-116 (462)
101 COG2085 Predicted dinucleotide 29.1 2.4E+02 0.0051 28.6 7.7 28 354-381 147-175 (211)
102 PTZ00242 protein tyrosine phos 28.5 3E+02 0.0064 26.2 8.1 18 352-369 96-114 (166)
103 PF04343 DUF488: Protein of un 27.9 59 0.0013 29.1 3.0 21 274-294 2-22 (122)
104 cd00115 LMWPc Substituted upda 27.6 51 0.0011 29.9 2.6 37 356-392 2-40 (141)
105 PRK08384 thiamine biosynthesis 27.0 85 0.0018 34.2 4.6 27 354-380 180-206 (381)
106 COG3453 Uncharacterized protei 26.5 1.1E+02 0.0024 28.6 4.5 86 269-373 13-106 (130)
107 PF02302 PTS_IIB: PTS system, 24.7 90 0.002 25.7 3.5 32 356-388 1-37 (90)
108 PLN02918 pyridoxine (pyridoxam 24.6 1E+02 0.0022 35.2 4.8 44 355-399 136-192 (544)
109 PF07464 ApoLp-III: Apolipopho 24.0 1E+02 0.0022 29.5 4.0 23 104-126 43-65 (155)
110 PF05802 EspB: Enterobacterial 23.6 2.6E+02 0.0057 29.6 7.1 116 79-205 138-254 (317)
111 COG0034 PurF Glutamine phospho 23.1 93 0.002 34.8 4.0 36 352-387 346-384 (470)
112 PRK00103 rRNA large subunit me 23.0 1.4E+02 0.0031 28.5 4.8 43 350-392 63-110 (157)
113 COG0435 ECM4 Predicted glutath 22.9 91 0.002 33.0 3.7 100 78-195 150-258 (324)
114 COG2453 CDC14 Predicted protei 22.7 88 0.0019 30.0 3.4 29 352-380 103-134 (180)
115 PF14606 Lipase_GDSL_3: GDSL-l 21.5 2E+02 0.0044 28.1 5.6 37 351-387 90-144 (178)
116 PRK13530 arsenate reductase; P 21.4 1.6E+02 0.0034 27.0 4.6 35 355-389 4-39 (133)
117 TIGR00853 pts-lac PTS system, 20.3 1.2E+02 0.0026 26.4 3.4 37 354-391 3-43 (95)
No 1
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.88 E-value=2.3e-22 Score=209.70 Aligned_cols=181 Identities=21% Similarity=0.243 Sum_probs=132.6
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccch-----------------hhhhhcCchh
Q 009585 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS-----------------VKKLLRGGRE 335 (531)
Q Consensus 273 Sp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~-----------------l~~ll~~~~e 335 (531)
...++.+++. ++.+|||||++.||.+||||||+ |+|+.+...+ ++..+..+ .
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~-~ 72 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAG-N 72 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcch-h
Confidence 4566766653 57899999999999999999999 8998432211 01111111 1
Q ss_pred hhhHHHHHHHhhhcccC-CCceEEEEe-CCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCceecccccchhhhchh
Q 009585 336 LDDTLTAAVIRNLKIVQ-DRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTILNE 413 (531)
Q Consensus 336 L~~~L~a~GI~~Lk~l~-kd~~IVVyC-~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~~p~~a~s~l~e 413 (531)
+...+... +...+ ++++||+|| ++|.||..+++.|+.+|| ++++|+||+.+|+..+++.....+
T Consensus 73 l~~~~~~~----~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~--------- 138 (345)
T PRK11784 73 IAAHREEA----WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAP--------- 138 (345)
T ss_pred HHHHHHHH----HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhc---------
Confidence 11111111 11122 788999999 578999999999999999 699999999999988775544311
Q ss_pred hHHHHHhhhcCCCceEe----chhHHHHH-HHHhcCChhhHHHHHHHhhccccccccchhhccCccccCCCCCCCCCChh
Q 009585 414 DAEAILEDINSSPVQFL----GFGVTIYR-RVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSV 488 (531)
Q Consensus 414 ~~~e~~~~i~p~pv~vl----G~g~T~~~-rl~~~~~~~~~~~Dl~~l~~p~~~~~~~~~~~~g~~~~~~~gl~~~ps~~ 488 (531)
.+.+..++ |.|||..+ +|...+.+ ++|+|++++ ||||+| | .+|+ ..|||+
T Consensus 139 ---------~~~~~ivl~G~TGsGKT~iL~~L~~~~~~---vlDlE~~ae---hrGS~f----G-----~~~~-~qpsQ~ 193 (345)
T PRK11784 139 ---------AQFPLVVLGGNTGSGKTELLQALANAGAQ---VLDLEGLAN---HRGSSF----G-----RLGG-PQPSQK 193 (345)
T ss_pred ---------ccCceEecCCCCcccHHHHHHHHHhcCCe---EEECCchhh---hccccc----c-----CCCC-CCcchH
Confidence 11233334 67999887 66655544 899999999 999999 9 8888 689999
Q ss_pred HHHHHHHHHHHhcCC
Q 009585 489 DVQNRVLQAAAKHES 503 (531)
Q Consensus 489 ~~~~~~~~~~~~~~~ 503 (531)
+||+++.+++.++.+
T Consensus 194 ~Fe~~l~~~l~~~~~ 208 (345)
T PRK11784 194 DFENLLAEALLKLDP 208 (345)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999876
No 2
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.85 E-value=3.5e-21 Score=198.38 Aligned_cols=178 Identities=20% Similarity=0.212 Sum_probs=124.0
Q ss_pred CcEEEEcCChhhhhhcCCCcccccccccccccCcccccch--hhhhhcC-----chhhhhHHHHHH----Hhhh-cccCC
Q 009585 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRG-----GRELDDTLTAAV----IRNL-KIVQD 353 (531)
Q Consensus 286 ~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~--l~~ll~~-----~~eL~~~L~a~G----I~~L-k~l~k 353 (531)
+.+|||||++.||.+||||||+ |+|+.+...+ ++..-+. ...+...|.... +..+ +..++
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~ 73 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADG 73 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCC
Confidence 4689999999999999999999 9998332111 1111110 000111111111 1111 11244
Q ss_pred CceEEEEe-CCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCceecccccchhhhchhhHHHHHhhhcCCCceEech
Q 009585 354 RSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLGF 432 (531)
Q Consensus 354 d~~IVVyC-~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~~p~~a~s~l~e~~~e~~~~i~p~pv~vlG~ 432 (531)
+.+||+|| ++|.||..+++.|+.+|| +|++|+||+.+|+..+++.....+.... .+.+.+ ..|+
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~~~~~------------~~vl~g--~tg~ 138 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELPQPFP------------LIVLGG--MTGS 138 (311)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccCCCCc------------eeccCC--CCCc
Confidence 55699999 578999999999999999 7999999999999998876664221100 000111 2478
Q ss_pred hHHHHH-HHHhcCChhhHHHHHHHhhccccccccchhhccCccccCCCCCCCCCChhHHHHHHHHHHHhc
Q 009585 433 GVTIYR-RVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKH 501 (531)
Q Consensus 433 g~T~~~-rl~~~~~~~~~~~Dl~~l~~p~~~~~~~~~~~~g~~~~~~~gl~~~ps~~~~~~~~~~~~~~~ 501 (531)
|+|.++ .+...+.. ++|+|++++ ||||+| | +|+++..|||+.|++++.+++.+.
T Consensus 139 gKt~Ll~~L~~~~~~---VvDlr~~a~---hrGs~f----G-----~~~~~~qpsq~~fe~~L~~~l~~~ 193 (311)
T TIGR03167 139 GKTELLHALANAGAQ---VLDLEGLAN---HRGSSF----G-----ALGLGPQPSQKRFENALAEALRRL 193 (311)
T ss_pred CHHHHHHHHhcCCCe---EEECCchHH---hcCccc----C-----CCCCCCCCchHHHHHHHHHHHHhC
Confidence 999998 44544434 899999999 999999 9 999989999999999999999876
No 3
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.83 E-value=2.8e-20 Score=191.88 Aligned_cols=217 Identities=17% Similarity=0.184 Sum_probs=153.4
Q ss_pred cchhHHHHHHHHHhhhhhcccCc---------ceEEEeeccCCCCCCccHHHHHhHhhhcccceeeeccchHHHHHHHHH
Q 009585 159 TVAAVDVLRNTIVALEESMTNGA---------SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIE 229 (531)
Q Consensus 159 ~~~~~d~l~~~~~~~~~~~~~~~---------~~~~~~yG~~~~~lp~~i~~~l~~~e~~ag~v~~~~G~~~~q~~~aie 229 (531)
.-|+.|||++.+..-+-.|.|.+ +...|.-||+++.+..++.++...... ....+. ....|+
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~----~~~~lp-----~~~~~~ 92 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTD----LPHMLP-----SEEAFA 92 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCC----cCCCCC-----CHHHHH
Confidence 35788999998865555677764 124578899999888776653322111 111111 134566
Q ss_pred HHHHhcCcCCCCCeeehhhhhhHHHHHHHHHHHHHhcCCC---------------------C------------------
Q 009585 230 GLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G------------------ 270 (531)
Q Consensus 230 ~l~~~lG~~~~~pVv~~~~~vg~~aal~~~~~l~~~~gy~---------------------g------------------ 270 (531)
.+.+.+|+.++++||+|....+..++. +||.+++.||. +
T Consensus 93 ~~l~~~Gi~~~~~VVvY~~~g~~~a~r--~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~ 170 (320)
T PLN02723 93 AAVSALGIENKDGVVVYDGKGIFSAAR--VWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAIEK 170 (320)
T ss_pred HHHHHcCCCCCCEEEEEcCCCcchHHH--HHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCcccccccccccccccc
Confidence 777888999999999876432222221 23433332221 0
Q ss_pred --------------------ccCHHHHHHHHhCCCCcEEEEcCChhhh-----------hhcCCCcccccccccccccCc
Q 009585 271 --------------------DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYL 319 (531)
Q Consensus 271 --------------------~ISp~El~elL~~~~~avLIDVRs~~Ey-----------~~GHIPGAigAv~i~~~NIPl 319 (531)
.++.+++...+. +++.+|||+|++.+| ..||||||+ |+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip~ 241 (320)
T PLN02723 171 VYQGQTVSPITFQTKFQPHLVWTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVPF 241 (320)
T ss_pred ccccCCCCCCcccccCCccceecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccCH
Confidence 034566766663 456889999999988 569999999 8888
Q ss_pred ccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHH-cCCc
Q 009585 320 PEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLR 398 (531)
Q Consensus 320 ~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~-aGLP 398 (531)
..+.+.. ..++++++|++.+.++|+ +++++||+||++|.||..+++.|+.+||++|++|+|||.+|.. .++|
T Consensus 242 ~~~~~~~-~~~~~~~el~~~~~~~gi------~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~P 314 (320)
T PLN02723 242 PQMLDSS-QTLLPAEELKKRFEQEGI------SLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTP 314 (320)
T ss_pred HHhcCCC-CCCCCHHHHHHHHHhcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCC
Confidence 6554332 346778899999988888 6889999999999999999999999999999999999999987 4788
Q ss_pred eecc
Q 009585 399 IKEL 402 (531)
Q Consensus 399 V~~~ 402 (531)
++++
T Consensus 315 v~~~ 318 (320)
T PLN02723 315 VATS 318 (320)
T ss_pred ccCC
Confidence 8764
No 4
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.82 E-value=4e-20 Score=186.89 Aligned_cols=215 Identities=19% Similarity=0.185 Sum_probs=149.2
Q ss_pred chhHHHHHHHHHhhhhhcccCcc----------eEEEeeccCCCCCCccHHHHHhHhhhcccceeeeccchHHHHHHHHH
Q 009585 160 VAAVDVLRNTIVALEESMTNGAS----------FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIE 229 (531)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~----------~~~~~yG~~~~~lp~~i~~~l~~~e~~ag~v~~~~G~~~~q~~~aie 229 (531)
-|+.+||++++..-+-.|.|.|+ .-.|.-||+++....+....... .+ +...... ....++
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~----~~----~~~~~~~-~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDH----TS----PLPHMMP-RPETFA 76 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCC----CC----CCCCCCC-CHHHHH
Confidence 47889999999776678999996 34577789998776655432211 11 1111111 134456
Q ss_pred HHHHhcCcCCCCCeeehhhhhhHHHHHHHHHHHHHhcCCC---------------------C-----------------c
Q 009585 230 GLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G-----------------D 271 (531)
Q Consensus 230 ~l~~~lG~~~~~pVv~~~~~vg~~aal~~~~~l~~~~gy~---------------------g-----------------~ 271 (531)
.+.+.+|++++++||+|....+..+.. .||.+.+.||. . .
T Consensus 77 ~~~~~~Gi~~d~~VVvyc~~~~~~a~~--~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 154 (281)
T PRK11493 77 VAMRELGVNQDKHLVVYDEGNLFSAPR--AWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAV 154 (281)
T ss_pred HHHHHcCCCCCCEEEEECCCCCchHHH--HHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccce
Confidence 667778999999999876432211111 22332222221 0 0
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhh-----------hcCCCcccccccccccccCcccccchhhhhhcCchhhhhHH
Q 009585 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~~Ey~-----------~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L 340 (531)
.+.+++...+ +.++.+|||+|++.||. .||||||+ |+|+.++... ..++.+++++..|
T Consensus 155 ~~~~~v~~~~-~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~--~~~~~~~~l~~~~ 223 (281)
T PRK11493 155 VRLTDVLLAS-HEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDELDAIF 223 (281)
T ss_pred ecHHHHHHhh-cCCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC--CCcCCHHHHHHHH
Confidence 1223333344 23568999999999994 69999999 8887665432 2356678888888
Q ss_pred HHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHH-cCCceecc
Q 009585 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (531)
Q Consensus 341 ~a~GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~-aGLPV~~~ 402 (531)
.+.|+ +++++||+||++|.||..+++.|+.+||++|++|+|||.+|.. .++|++++
T Consensus 224 ~~~g~------~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 224 FGRGV------SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred HhcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 88887 6889999999999999999999999999999999999999998 79998864
No 5
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=8.8e-20 Score=185.79 Aligned_cols=217 Identities=18% Similarity=0.170 Sum_probs=161.5
Q ss_pred cchhHHHHHHHHH-----hhhhhcccCcc--eEEEeeccCCCCCCccHHHHHhHhhhcccceeeeccchHHHHHHHHHHH
Q 009585 159 TVAAVDVLRNTIV-----ALEESMTNGAS--FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (531)
Q Consensus 159 ~~~~~d~l~~~~~-----~~~~~~~~~~~--~~~~~yG~~~~~lp~~i~~~l~~~e~~ag~v~~~~G~~~~q~~~aie~l 231 (531)
--|+.|||.+++. .++-++..-.. -..|.-||+++.+..+....++-.....+. +-. ...|+.+
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~----lp~-----~e~fa~~ 81 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHM----LPS-----PEQFAKL 81 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCC----CCC-----HHHHHHH
Confidence 3578999999976 33433333333 367888999999999988877663321221 111 3456677
Q ss_pred HHhcCcCCCCCeeehhhhhhHHHHHHHHHHHHHhcCCC--------------------------------------CccC
Q 009585 232 ERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS--------------------------------------GDLS 273 (531)
Q Consensus 232 ~~~lG~~~~~pVv~~~~~vg~~aal~~~~~l~~~~gy~--------------------------------------g~IS 273 (531)
.+.+|+..+++||+|+..-+..++. +||++++-|.. ...+
T Consensus 82 ~~~~GI~~d~tVVvYdd~~~~~A~r--a~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~ 159 (285)
T COG2897 82 LGELGIRNDDTVVVYDDGGGFFAAR--AWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVD 159 (285)
T ss_pred HHHcCCCCCCEEEEECCCCCeehHH--HHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCC
Confidence 7889999999999888755554443 45655542221 1234
Q ss_pred HHHHHHHHhCCCCcEEEEcCChhhhhh----------cCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHH
Q 009585 274 PKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (531)
Q Consensus 274 p~El~elL~~~~~avLIDVRs~~Ey~~----------GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~ 343 (531)
..+....+ +....+|||+|++++|.. ||||||+ |+|+..+.+ -+.+++.+++++.++...
T Consensus 160 ~~~~~~~~-~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~-~~~~~~~~~~~~~l~~~~ 229 (285)
T COG2897 160 ATLVADAL-EVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVD-DGGLFKSPEEIARLYADA 229 (285)
T ss_pred HHHHHHHh-cCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhc-CCCccCcHHHHHHHHHhc
Confidence 45555555 456788999999999988 9999999 999977766 445677778888888788
Q ss_pred HHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHH-cCCceecc
Q 009585 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (531)
Q Consensus 344 GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~-aGLPV~~~ 402 (531)
|| +++++||+||++|.||+..+..|+.+|+.++++|+|+|.+|.+ .+.||+++
T Consensus 230 gi------~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 230 GI------DPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred CC------CCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 88 7999999999999999999999999999999999999999987 56688765
No 6
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.80 E-value=1.3e-19 Score=157.65 Aligned_cols=99 Identities=26% Similarity=0.220 Sum_probs=83.7
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhc
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk 349 (531)
..++++++.+++..+.+.+|||||++.||..||||||+ |+|+.++......+ +
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~l--------------~----- 62 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGEL--------------A----- 62 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHhc--------------C-----
Confidence 46899999999865546899999999999999999999 99986654332221 1
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCc-eEEecchHHHHHHcC
Q 009585 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQSWVKEG 396 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGykn-V~vLdGG~~AW~~aG 396 (531)
.+++++||+||++|.||..+++.|+.+||++ |++|+||+.+|..+|
T Consensus 63 -~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 63 -PDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred -CCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 1467899999999999999999999999988 999999999999876
No 7
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.79 E-value=3.7e-19 Score=197.79 Aligned_cols=216 Identities=17% Similarity=0.096 Sum_probs=156.7
Q ss_pred chhHHHHHHHHHhhhhhcccCcceEEEeeccCCCCCCccHHHHHhHhhhcccceeeeccchHHHHHHHHHHHHHhcCcCC
Q 009585 160 VAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP 239 (531)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG~~~~~lp~~i~~~l~~~e~~ag~v~~~~G~~~~q~~~aie~l~~~lG~~~ 239 (531)
-++.++|++.+..-+-.|.|.|+.--|.-||++..+..+............+ .+. ....++...+.+|+++
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~----~lp-----~~~~l~~~l~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPG----LLP-----DTADLEQLFGELGHNP 80 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCC----CCC-----CHHHHHHHHHHcCCCC
Confidence 4788999999977667889999988888899998877665443221111111 111 1234555666789999
Q ss_pred CCCeeehhhhhhHHHHHHHHHHHHHhcCCC--------------------------------------CccCHHHHHHHH
Q 009585 240 NDPIVPFVVFLGTSATLWIFYWWWTYGGYS--------------------------------------GDLSPKSTLELL 281 (531)
Q Consensus 240 ~~pVv~~~~~vg~~aal~~~~~l~~~~gy~--------------------------------------g~ISp~El~elL 281 (531)
+++||+|.-..+..++. +||.+++.|+. ..++.+++.+.+
T Consensus 81 d~~VVvYd~~g~~~A~R--~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l 158 (610)
T PRK09629 81 DAVYVVYDDEGGGWAGR--FIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRL 158 (610)
T ss_pred CCEEEEECCCCCchHHH--HHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhh
Confidence 99999876433222221 23433332210 124567777777
Q ss_pred hCCCCcEEEEcCChhhhh--------hcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCC
Q 009585 282 RGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (531)
Q Consensus 282 ~~~~~avLIDVRs~~Ey~--------~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~k 353 (531)
. +++.+|||+|+++||. .||||||+ |+|+..+.+.. ..++.++++++++..+|| ++
T Consensus 159 ~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~-~~lk~~~el~~~~~~~Gi------~~ 222 (610)
T PRK09629 159 G-AADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKA-RNLRIRQDMPEILRDLGI------TP 222 (610)
T ss_pred C-CCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCC-CCCCCHHHHHHHHHHcCC------CC
Confidence 3 4678999999999994 79999999 88875443322 235677889999988888 68
Q ss_pred CceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHH-cCCceecc
Q 009585 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (531)
Q Consensus 354 d~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~-aGLPV~~~ 402 (531)
+++||+||++|.||..+++.|+.+||++|++|+|||.+|.. .++|+++.
T Consensus 223 ~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 223 DKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred CCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 99999999999999999999999999999999999999987 58898874
No 8
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.78 E-value=4.4e-19 Score=152.06 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=81.3
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcc
Q 009585 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~ 350 (531)
.|++.++.+++. +++.+|||||++.||..||||||+ |+|+.++...... +.. +..
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~-------~~~---------~~~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFW-------LDE---------NLD 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHH-------HHh---------hhh
Confidence 589999999885 567899999999999999999999 9998765432111 111 001
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHH
Q 009585 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~ 394 (531)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|.+
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 26889999999999999999999999999999999999999963
No 9
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.77 E-value=1.2e-18 Score=148.40 Aligned_cols=97 Identities=29% Similarity=0.479 Sum_probs=84.2
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcc
Q 009585 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~ 350 (531)
.|+++++.++++. +.+|||+|++.+|..+|||||+ |+|+.++..... .
T Consensus 3 ~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~----------------------~ 50 (99)
T cd01527 3 TISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGL----------------------P 50 (99)
T ss_pred ccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhccccc----------------------C
Confidence 6899999998864 3899999999999999999998 888766543211 1
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCce
Q 009585 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV 399 (531)
++++++||+||++|.||..++..|+++||++|++|.||+.+|+..|+|+
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 2678999999999999999999999999999999999999999999875
No 10
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.76 E-value=1.6e-18 Score=147.21 Aligned_cols=93 Identities=16% Similarity=0.268 Sum_probs=77.2
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcc
Q 009585 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 272 ISp~El~elL~~~-~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~ 350 (531)
|++.++.+++..+ ++.+|||||++.||..||||||+ |+|+.++......+.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~-------------------- 52 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFA-------------------- 52 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhc--------------------
Confidence 6789999998654 36789999999999999999999 898765533222111
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
..++++||+||++|.||..+++.|+.+||+ |++|+||+.+|.
T Consensus 53 ~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 53 PVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred ccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 025789999999999999999999999998 999999999996
No 11
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.76 E-value=1.8e-18 Score=150.19 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=86.9
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhc
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk 349 (531)
..++++++.+++. +.+.+|||+|++.+|..+|||||+ |+|+..|.....
T Consensus 5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~---------------------- 53 (108)
T PRK00162 5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMR---------------------- 53 (108)
T ss_pred cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHH----------------------
Confidence 4689999999885 346899999999999999999998 888754433221
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCceec
Q 009585 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~ 401 (531)
.+++++++++||.+|.+|..++..|+..||++|++++||+.+|+..++|++.
T Consensus 54 ~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 54 QADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred hcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 1267889999999999999999999999999999999999999999999875
No 12
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.76 E-value=1.9e-18 Score=152.40 Aligned_cols=110 Identities=25% Similarity=0.299 Sum_probs=92.4
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCCh-------hhhhhcCCCcccccccccccccCcccccch---hhhhhcCchhhhhHHH
Q 009585 272 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~-------~Ey~~GHIPGAigAv~i~~~NIPl~el~~~---l~~ll~~~~eL~~~L~ 341 (531)
++++++.+++.+ ++.+|||+|++ .+|..+|||||+ |+|+.++... ....+++.+++.+.+.
T Consensus 2 i~~~~l~~~l~~-~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd01448 2 VSPDWLAEHLDD-PDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELLG 72 (122)
T ss_pred cCHHHHHHHhCC-CCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHHH
Confidence 688999999853 57899999999 999999999998 8887655432 2335566778888777
Q ss_pred HHHHhhhcccCCCceEEEEeCC-CchHHHHHHHHHHccCCceEEecchHHHHHHcC
Q 009585 342 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (531)
Q Consensus 342 a~GI~~Lk~l~kd~~IVVyC~s-G~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aG 396 (531)
..++ +++++||+||++ |.++..+++.|+.+||++|++|+|||.+|..+|
T Consensus 73 ~~~~------~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 73 SLGI------SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HcCC------CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 6666 789999999999 589999999999999999999999999998865
No 13
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.76 E-value=2.4e-18 Score=146.98 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=80.1
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhccc
Q 009585 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l 351 (531)
|+++++.++++++++++|||||++.||..||||||+ |+|+.++....... ... .+..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~~------~~~--------~~~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFLEI------EED--------ILDQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHHHh------hHH--------HHhhC
Confidence 678999999976667899999999999999999999 89986654321000 000 01124
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 352 ~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
+++++||+||++|.||..++..|+.+||+ +++|.|||.+|+
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 68899999999999999999999999997 999999999996
No 14
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.76 E-value=1.1e-18 Score=149.59 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=84.8
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccC
Q 009585 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (531)
Q Consensus 273 Sp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~ 352 (531)
+++++.++++..++.+|||+|++.+|..||||||+ |+|+.++.+. ....+++|...+...++ +
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~---~~~~~~~~~~~~~~~~~------~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDA---LALSEEEFEKKYGFPKP------S 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhh---hCCCHHHHHHHhcccCC------C
Confidence 57788887742467999999999999999999998 8888665432 22334556665555444 5
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
++++||+||++|.+|..+++.|+.+||++|++|+||+.+|.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 78999999999999999999999999999999999999995
No 15
>PLN02160 thiosulfate sulfurtransferase
Probab=99.76 E-value=2.6e-18 Score=157.09 Aligned_cols=113 Identities=17% Similarity=0.209 Sum_probs=87.7
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcc--cccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhh
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGA--igAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~ 347 (531)
..+++.++.+++++ +.+|||||++.||..|||||| + |+|+..+.. .. .+.+++++.... .
T Consensus 15 ~~i~~~e~~~~~~~--~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~~-~~-~l~~~~~~~~~~-~----- 76 (136)
T PLN02160 15 VSVDVSQAKTLLQS--GHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNTP-QG-RVKNQEFLEQVS-S----- 76 (136)
T ss_pred eEeCHHHHHHHHhC--CCEEEECCCHHHHhcCCCCCccee--------cccchhcCc-cc-ccCCHHHHHHHH-h-----
Confidence 46899999999853 468999999999999999999 6 777633321 11 111112211111 1
Q ss_pred hcccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCceecc
Q 009585 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (531)
Q Consensus 348 Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~ 402 (531)
.++++++||+||++|.||..++..|...||++|++|.|||.+|+.+|+|+.+.
T Consensus 77 --~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 129 (136)
T PLN02160 77 --LLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQE 129 (136)
T ss_pred --ccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCcccc
Confidence 12678899999999999999999999999999999999999999999999985
No 16
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.74 E-value=2.8e-18 Score=150.04 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=89.3
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhh-----------cCCCcccccccccccccCcccccchhhhhhcCchhhhhHH
Q 009585 272 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~~Ey~~-----------GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L 340 (531)
+++.++.++++ +++.+|||+|++.+|.. ||||||+ |+|+.++.... ..+++++++...+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~-~~~~~~~~~~~~~ 70 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDED-GTFKSPEELRALF 70 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCC-CCcCCHHHHHHHH
Confidence 47888888874 45689999999999987 9999998 88876554322 2456677888888
Q ss_pred HHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 341 ~a~GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
...++ +++++||+||++|.+|.++++.|+.+||+++++|+||+.+|.
T Consensus 71 ~~~~~------~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 71 AALGI------TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred HHcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 77776 688999999999999999999999999999999999999996
No 17
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.74 E-value=8.4e-18 Score=146.86 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=83.9
Q ss_pred CccCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhh
Q 009585 270 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (531)
Q Consensus 270 g~ISp~El~elL~~~-~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~L 348 (531)
..++++++.++++++ ++.+|||+|++.+|..||||||+ ++|...+.....
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~--------------------- 58 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT--------------------- 58 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh---------------------
Confidence 479999999999754 56899999999999999999998 888755432110
Q ss_pred cccCCCceEEEEeCCCc--hHHHHHHHHHHccCCceEEecchHHHHHHcCCce
Q 009585 349 KIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (531)
Q Consensus 349 k~l~kd~~IVVyC~sG~--RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV 399 (531)
..++++++||+||++|. +|..+++.|+.+|| ++++|+||+.+|+.+|+|+
T Consensus 59 ~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~-~v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 AKLDKEKLFVVYCDGPGCNGATKAALKLAELGF-PVKEMIGGLDWWKREGYAT 110 (110)
T ss_pred hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCC-eEEEecCCHHHHHHCCCCC
Confidence 12368899999999874 89999999999999 5999999999999999975
No 18
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.74 E-value=5.4e-18 Score=150.81 Aligned_cols=110 Identities=23% Similarity=0.275 Sum_probs=88.0
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhh
Q 009585 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (531)
Q Consensus 269 ~g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~L 348 (531)
...|+++++.+++.++++++|||+|++.||..+|||||+ |+|+.++..+...+.+ + .+...+
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~----~--~~~~~~---- 68 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKS----L--QELPLD---- 68 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhh----h--hhcccc----
Confidence 357999999999865567899999999999999999999 8998766543322110 0 111122
Q ss_pred cccCCCceEEEEeCCCchHHHHHHHHHHccC-CceEEecchHHHHHHcCCc
Q 009585 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQGGFQSWVKEGLR 398 (531)
Q Consensus 349 k~l~kd~~IVVyC~sG~RS~~AA~~L~~lGy-knV~vLdGG~~AW~~aGLP 398 (531)
++++++||+||++|.||..+++.|+.+|| ++|++|+|||.+|.....+
T Consensus 69 --~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 69 --NDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred --cCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 36889999999999999999999999999 7999999999999987544
No 19
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.73 E-value=1.4e-17 Score=168.44 Aligned_cols=121 Identities=15% Similarity=0.240 Sum_probs=100.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCC----------hhhhhhcCCCcccccccccccccCcccccc---hhhhhhcCchhhh
Q 009585 271 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 337 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs----------~~Ey~~GHIPGAigAv~i~~~NIPl~el~~---~l~~ll~~~~eL~ 337 (531)
-++++++.+++ ++++++|||+|+ +.+|..||||||+ |+|+..+.. ....+++.+++|+
T Consensus 6 lvs~~~l~~~l-~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHI-DDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhc-CCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 47899999998 457799999996 7899999999998 666543322 1234566778999
Q ss_pred hHHHHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCceEEecchHHHHHHcCCceecccccc
Q 009585 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSET 406 (531)
Q Consensus 338 ~~L~a~GI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~~p~~ 406 (531)
+.+..+|| +++++||+||.+|. .+.++++.|+.+||++|++|+||+.+|.++|+|+++..+..
T Consensus 77 ~~~~~~Gi------~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~ 140 (281)
T PRK11493 77 VAMRELGV------NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVEL 140 (281)
T ss_pred HHHHHcCC------CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCC
Confidence 99999998 68999999998876 46788999999999999999999999999999999875544
No 20
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.73 E-value=1e-17 Score=140.97 Aligned_cols=93 Identities=27% Similarity=0.372 Sum_probs=80.1
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhh--cCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhh
Q 009585 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~~Ey~~--GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~L 348 (531)
.|++.++.++++++.+++|||+|++.+|.. +|||||+ |+|+.++.....
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~--------------------- 51 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLG--------------------- 51 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHh---------------------
Confidence 378899999886546789999999999999 9999999 888865433221
Q ss_pred cccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 349 k~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
.++++++||+||++|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 52 -~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 52 -DLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred -hcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 13688999999999999999999999999999999999999996
No 21
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.73 E-value=1.6e-17 Score=156.39 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=84.0
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChh----hhhhc---------CCCcccccccccccccCc---ccccchhhhhhcCc
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYL---PEVGGSVKKLLRGG 333 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVRs~~----Ey~~G---------HIPGAigAv~i~~~NIPl---~el~~~l~~ll~~~ 333 (531)
..|+++++.+++. +++.+|||||++. +|..| |||||+ |+|. .++.... .
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~------~ 100 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAW------Q 100 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCch------h
Confidence 4799999999995 4578999999876 46544 999998 6663 2222110 1
Q ss_pred hhhhhHHHHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCceEEecchHHHHHHcCCce
Q 009585 334 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (531)
Q Consensus 334 ~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV 399 (531)
..+...+.++++ .+++++||+||++|. +|..+++.|+.+||++|++|+|||.+|+.+|+|+
T Consensus 101 ~~~~~~l~~~~~-----~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATG-----GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 123333433332 258999999999997 8999999999999999999999999999999985
No 22
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.72 E-value=1.7e-17 Score=142.33 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=78.1
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhh--hhcCchhhhhHHHHHHHhhh
Q 009585 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKK--LLRGGRELDDTLTAAVIRNL 348 (531)
Q Consensus 272 ISp~El~elL~~~-~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~--ll~~~~eL~~~L~a~GI~~L 348 (531)
|+++++.+++.++ ++++|||||++.+|..||||||+ |+|+..+...... .++....+..
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~~~~~~~~~~---------- 62 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQLPTVPRLEN---------- 62 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhcccccccccccchHHHHh----------
Confidence 6889999998643 36899999999999999999998 8887544211110 1111111111
Q ss_pred cccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 349 k~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
.++++||+||++|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 63 ---~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 63 ---YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred ---hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 247899999999999999999999999999999999999995
No 23
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.72 E-value=1.4e-17 Score=137.69 Aligned_cols=99 Identities=29% Similarity=0.446 Sum_probs=76.8
Q ss_pred CCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCC
Q 009585 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (531)
Q Consensus 284 ~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~s 363 (531)
+++.+|||+|++.+|..+|||||+ |+|+..+...... .. ...+...+...+ .+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~-~~-~~~~~~~~~~~~------~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGE-LD-ILEFEELLKRLG------LDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCC-cC-HHHHHHHHHHcC------CCCCCeEEEEeCC
Confidence 357899999999999999999998 8887554432111 00 002223333333 3688999999999
Q ss_pred CchHHHHHHHHHHccCCceEEecchHHHHHHcCCc
Q 009585 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (531)
Q Consensus 364 G~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLP 398 (531)
|.++..+++.|+.+||++|++|+|||.+|+..|.|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998865
No 24
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.72 E-value=2.7e-17 Score=147.85 Aligned_cols=105 Identities=25% Similarity=0.364 Sum_probs=80.6
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchh-----------------hhhhcCch
Q 009585 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV-----------------KKLLRGGR 334 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l-----------------~~ll~~~~ 334 (531)
|+++++.+++. ++.+|||||++.||..||||||+ |+|+..+..+. +..++ ..
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 69 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELV-SG 69 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHH-hh
Confidence 68899999885 56899999999999999999998 88875432110 00011 12
Q ss_pred hhhhHHHH---HHHhhhcccCCCceEEEEeC-CCchHHHHHHHHHHccCCceEEecchHHHHHH
Q 009585 335 ELDDTLTA---AVIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 335 eL~~~L~a---~GI~~Lk~l~kd~~IVVyC~-sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~ 394 (531)
++++.+.. .|+ +++++||+||+ +|.||..+++.|+.+|| +|++|+||+.+|+.
T Consensus 70 ~~~~~~~~~~~~~i------~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 70 KLKRILNEAWEARL------ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hHHHHHHHHHHhcc------CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 23344333 244 78999999996 68899999999999999 69999999999975
No 25
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.72 E-value=2.8e-17 Score=140.93 Aligned_cols=97 Identities=27% Similarity=0.397 Sum_probs=80.4
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhc
Q 009585 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 271 ~ISp~El~elL~~~-~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk 349 (531)
.|++.++.+++... .+.+|||+|++.||..+|||||+ |+|+.++......+ .
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~-------------------~ 53 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKEL-------------------D 53 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHh-------------------c
Confidence 37899999998653 36899999999999999999999 89886554322211 0
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHH
Q 009585 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~ 394 (531)
..++++++|+||++|.||..+++.|.+.||++|++|+||+.+|..
T Consensus 54 ~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 54 SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 114688999999999999999999999999999999999999975
No 26
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.71 E-value=3.1e-17 Score=140.05 Aligned_cols=108 Identities=29% Similarity=0.492 Sum_probs=80.0
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccC
Q 009585 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (531)
Q Consensus 273 Sp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~ 352 (531)
||+|+.+++ ++++.+|||+|++.+|..||||||+ |+|...+... ........+...+...+. ..+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPD--EPSLSEDKLDEFLKELGK----KID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSS--SSBCHHHHHHHHHHHHTH----GST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccc--cccccccccccccccccc----ccc
Confidence 689999999 6789999999999999999999998 7776443100 001111222222333322 347
Q ss_pred CCceEEEEeCCCchHHHHHHH-----HHHccCCceEEecchHHHHHHc
Q 009585 353 DRSKVIVMDADGTRSKGIARS-----LRKLGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~-----L~~lGyknV~vLdGG~~AW~~a 395 (531)
++++||+||.+|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 888999999999888777766 8999999999999999999864
No 27
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.71 E-value=1.9e-17 Score=170.83 Aligned_cols=120 Identities=18% Similarity=0.295 Sum_probs=100.1
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcC--------C-hhhhhhcCCCcccccccccccccCcccccch---hhhhhcCchhhh
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELD 337 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVR--------s-~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~---l~~ll~~~~eL~ 337 (531)
..|+++++.+++. +++.+|||+| + ..+|.+||||||+ ++++..+.+. ...+++.++.|+
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~ 92 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFA 92 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHH
Confidence 3689999999984 4779999996 3 3789999999998 6665444332 334567788999
Q ss_pred hHHHHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCceEEecchHHHHHHcCCceecccc
Q 009585 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (531)
Q Consensus 338 ~~L~a~GI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~~p 404 (531)
+.|..+|| .++++|||||+.|. .+.+++|.|+.+||++|++|+||+.+|..+|+|+++..+
T Consensus 93 ~~l~~~Gi------~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~ 154 (320)
T PLN02723 93 AAVSALGI------ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSAS 154 (320)
T ss_pred HHHHHcCC------CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCC
Confidence 99999998 68899999998876 567889999999999999999999999999999988654
No 28
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.70 E-value=3.3e-17 Score=139.31 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=79.3
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhh-hhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcc
Q 009585 272 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~~Ey-~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~ 350 (531)
|+++++.+++. +++.+|||+|++.+| ..||||||+ |+|+..+...... .. .+... .
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~-----~~---~~~~~------~ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADP-----DS---PYHKP------A 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCc-----cc---ccccc------C
Confidence 57889998885 357899999999998 579999998 8887554321110 00 00011 1
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcC
Q 009585 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aG 396 (531)
++++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 3688999999999999999999999999999999999999998765
No 29
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.70 E-value=5.9e-17 Score=180.28 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=101.9
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCccccc---chhhhhhcCchhhhhHHHHHHHh
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDDTLTAAVIR 346 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~---~~l~~ll~~~~eL~~~L~a~GI~ 346 (531)
..|+++++.+++. +++++|||+|++.+|..||||||+ ++++.... .....+++.+++++..|..+||
T Consensus 9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI- 78 (610)
T PRK09629 9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGH- 78 (610)
T ss_pred ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCC-
Confidence 3589999999994 567999999999999999999998 66543211 1123456777899999999998
Q ss_pred hhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccccc
Q 009585 347 NLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (531)
Q Consensus 347 ~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~~p~ 405 (531)
+++++||+||++|. ++.+++|.|+.+||++|++|+||+.+|..+|+|++++.+.
T Consensus 79 -----~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~ 133 (610)
T PRK09629 79 -----NPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPP 133 (610)
T ss_pred -----CCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCC
Confidence 68999999999774 8889999999999999999999999999999999887554
No 30
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.70 E-value=2.3e-17 Score=174.80 Aligned_cols=180 Identities=19% Similarity=0.232 Sum_probs=127.4
Q ss_pred eccCCCCCCccHHH--HHhHhhhcccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhhhHHHHHH------
Q 009585 188 YGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLW------ 257 (531)
Q Consensus 188 yG~~~~~lp~~i~~--~l~~~e~~ag~v~~~~G~~~~q~~~aie~l~~~lG~~~--~~pVv~~~~~vg~~aal~------ 257 (531)
+|+|++|+.++... .+..|.+ +| |++|.-+... +.++.|.++-++|+.. ...++.|..+-...-.+-
T Consensus 183 ~~~c~~c~~~~~~~~~~~~~~~~-~g-v~g~~~~~~g-~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 259 (392)
T PRK07878 183 LGLNYRDLYPEPPPPGMVPSCAE-GG-VLGVLCASIG-SIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTIKIRKDPS 259 (392)
T ss_pred CCCeeeeecCCCCCccCCCCCcc-CC-ccchHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeEeeccCCC
Confidence 58999999875332 3455666 67 8999888888 6889999998888643 234444332221100000
Q ss_pred ---H--H--HHHH-H-------hcCCCCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccc
Q 009585 258 ---I--F--YWWW-T-------YGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEV 322 (531)
Q Consensus 258 ---~--~--~~l~-~-------~~gy~g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el 322 (531)
+ + |-.+ . ...-...|+++++.++++++++.+|||+|++.||..+|||||+ |+|+.++
T Consensus 260 C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip~~~l 331 (392)
T PRK07878 260 TPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIPKSEI 331 (392)
T ss_pred CCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcChHHh
Confidence 0 0 0000 0 0011136899999999865556899999999999999999999 8988665
Q ss_pred cchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCc
Q 009585 323 GGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (531)
Q Consensus 323 ~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLP 398 (531)
.... . +..++++++||+||++|.||..+++.|++.||++|++|+||+.+|+....|
T Consensus 332 ~~~~--------~------------~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 332 LSGE--------A------------LAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred cchh--------H------------HhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 3210 0 012368899999999999999999999999999999999999999987544
No 31
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.70 E-value=3.8e-17 Score=149.81 Aligned_cols=108 Identities=22% Similarity=0.235 Sum_probs=89.6
Q ss_pred cCHHHHHHHHhC---CCCcEEEEcCCh--------hhhhh------------cCCCcccccccccccccCcccccc---h
Q 009585 272 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVGG---S 325 (531)
Q Consensus 272 ISp~El~elL~~---~~~avLIDVRs~--------~Ey~~------------GHIPGAigAv~i~~~NIPl~el~~---~ 325 (531)
++++++.+.+.+ +++.+|||+|.. .+|.. ||||||+ ++|+..+.. .
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578888888853 467999999987 89988 9999998 666544322 2
Q ss_pred hhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCC---CchHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 326 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 326 l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~s---G~RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
....++++++|++.|..+|| +++++||+||.+ |.++.++++.|+.+||++|++|+|||.+|+
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI------~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGI------DLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCC------CCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 23446677799999999998 688999999976 679999999999999999999999999996
No 32
>PRK07411 hypothetical protein; Validated
Probab=99.69 E-value=3.9e-17 Score=172.97 Aligned_cols=182 Identities=20% Similarity=0.206 Sum_probs=125.7
Q ss_pred ccCCCCCCccHHH--HHhHhhhcccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhhhHHHHHHH------
Q 009585 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWI------ 258 (531)
Q Consensus 189 G~~~~~lp~~i~~--~l~~~e~~ag~v~~~~G~~~~q~~~aie~l~~~lG~~~--~~pVv~~~~~vg~~aal~~------ 258 (531)
||||+|++|+..+ .+..|.. +| |+++.-+..+ +.++.|.++-++|+.+ ...++++..+-...-.+-+
T Consensus 176 ~~c~~c~~~~~~~~~~~~~c~~-~g-vlg~~~~~~g-~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~c 252 (390)
T PRK07411 176 GPNYRDLYPEPPPPGMVPSCAE-GG-VLGILPGIIG-VIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRPNPER 252 (390)
T ss_pred CCChHHhcCCCCCcccCCCCcc-CC-cCcchHHHHH-HHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccCCCCC
Confidence 5899999986432 3445666 77 8999999988 6889999999888643 2344443322211000000
Q ss_pred -------HHHHHH-----------hcCCCCccCHHHHHHHHhCCC-CcEEEEcCChhhhhhcCCCcccccccccccccCc
Q 009585 259 -------FYWWWT-----------YGGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL 319 (531)
Q Consensus 259 -------~~~l~~-----------~~gy~g~ISp~El~elL~~~~-~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl 319 (531)
-|=.+. .......|+++++.++++.+. +.+|||||++.||..||||||+ |+|+
T Consensus 253 ~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi--------niP~ 324 (390)
T PRK07411 253 PVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV--------LVPL 324 (390)
T ss_pred CccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------EccH
Confidence 000000 011224689999999986543 5799999999999999999999 8988
Q ss_pred ccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCce
Q 009585 320 PEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (531)
Q Consensus 320 ~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV 399 (531)
.++..... .++ ++.++++++||+||++|.||..+++.|+.+||++ +.|.||+.+|+....|-
T Consensus 325 ~~l~~~~~-----~~~------------l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 325 PDIENGPG-----VEK------------VKELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred HHhhcccc-----hHH------------HhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 66533110 001 1123578999999999999999999999999975 68999999999875543
No 33
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.69 E-value=5.4e-17 Score=150.09 Aligned_cols=98 Identities=16% Similarity=0.271 Sum_probs=80.3
Q ss_pred HHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCce
Q 009585 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (531)
Q Consensus 277 l~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~ 356 (531)
+.+++..+.+++|||||++.+|..+|||||+ ++|..++...+. .++++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~----------------------~l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALE----------------------KLPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHH----------------------hcCCCCC
Confidence 3455555556899999999999999999998 776544322211 1256789
Q ss_pred EEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCceecccc
Q 009585 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (531)
Q Consensus 357 IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~~p 404 (531)
||+||.+|.+|..+++.|+..||++|++|+||+.+|+.+|+|++.+.+
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 999999999999999999999999999999999999999999987633
No 34
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.69 E-value=6.1e-17 Score=136.24 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=75.7
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhccc
Q 009585 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l 351 (531)
++|+++.+++ .++.++||+|++.+|..+|||||+ |+|+.++..... .+
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~----------------------~~ 48 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLN----------------------EL 48 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHH----------------------hc
Confidence 4688888887 356799999999999999999999 888755432221 13
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 352 ~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
+++++||+||++|.++..+++.|+.+|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 5788999999999999999999999999 9999999999996
No 35
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.67 E-value=1.8e-16 Score=141.91 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=79.0
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEcCChhhhhhcCCCcccccccccccccCcc-cccchhhhhhcCchhhhhHHHHHH
Q 009585 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV 344 (531)
Q Consensus 271 ~ISp~El~elL~~~-----~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~-el~~~l~~ll~~~~eL~~~L~a~G 344 (531)
.|+++++.+++.++ ++++|||||++.||..||||||+ |+|+. .+....... ...++
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~----------~~~~~ 64 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDK----------PGVAS 64 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHh----------hcccc
Confidence 58999999999653 46899999999999999999999 88874 333211100 00011
Q ss_pred HhhhcccCCCceEEEEeC-CCchHHHHHHHHHHc------------cCCceEEecchHHHHH
Q 009585 345 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWV 393 (531)
Q Consensus 345 I~~Lk~l~kd~~IVVyC~-sG~RS~~AA~~L~~l------------GyknV~vLdGG~~AW~ 393 (531)
++++++||+||+ +|.||..+++.|+.+ ||++|++|+|||.+|.
T Consensus 65 ------~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 65 ------KKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ------cCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 268999999997 999999999999985 9999999999999984
No 36
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.66 E-value=1.7e-16 Score=134.82 Aligned_cols=86 Identities=24% Similarity=0.292 Sum_probs=69.4
Q ss_pred CCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCC
Q 009585 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (531)
Q Consensus 284 ~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~s 363 (531)
+++.+|||+|++.+|.++|||||+ |+|+.++..... .++ .++ ..+++++||+||++
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~~-------~~~----~~~-----~~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRSQ-------ELQ----ALE-----APGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCHH-------HHH----Hhh-----cCCCCCCEEEEeCC
Confidence 467899999999999999999998 888754432211 111 111 13678999999999
Q ss_pred CchHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 364 G~RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
|.+|..+++.|+.+||++|++|+||+.+|.
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 95 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWV 95 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhc
Confidence 999999999999999999999999999996
No 37
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.5e-16 Score=144.46 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=91.6
Q ss_pred CCCCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHh
Q 009585 267 GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR 346 (531)
Q Consensus 267 gy~g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~ 346 (531)
.....++..++.++++ .++.++||||+|+||.+||||.++ |||+...... ..+++++++.+ .|.
T Consensus 20 ~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~--~~l~~~eF~kq----vg~- 83 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGA--GALKNPEFLKQ----VGS- 83 (136)
T ss_pred CCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccc--cccCCHHHHHH----hcc-
Confidence 4456788999999985 566999999999999999999998 8998432222 22444444333 222
Q ss_pred hhcccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCcee
Q 009585 347 NLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIK 400 (531)
Q Consensus 347 ~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~ 400 (531)
.| .+.++.|||+|++|.||..|...|..+||+||.+|.|||.+|.+.|+|..
T Consensus 84 -~k-p~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 84 -SK-PPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred -cC-CCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 11 24667999999999999999999999999999999999999999888754
No 38
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.66 E-value=1.4e-16 Score=141.28 Aligned_cols=103 Identities=25% Similarity=0.333 Sum_probs=81.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhh-hcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcc
Q 009585 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~~Ey~-~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~ 350 (531)
|+++++.++++++++.+|||||++.||. .||||||+ |+|+.++.... ++. .+...+...
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~----~~~-~~~~~l~~~------- 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDME----INP-NFLAELEEK------- 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccc----cCH-HHHHHHHhh-------
Confidence 6889999999765679999999999999 99999998 88876543211 111 111111111
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHH
Q 009585 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~ 394 (531)
.+++++||+||++|.+|..+++.|+.+||++++.|.|||.+|+.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 25789999999999999999999999999999999999999976
No 39
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.8e-16 Score=134.55 Aligned_cols=96 Identities=31% Similarity=0.482 Sum_probs=80.7
Q ss_pred HHHhCCCCcEEEEcCChhhhhhcCCCc-ccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceE
Q 009585 279 ELLRGKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKV 357 (531)
Q Consensus 279 elL~~~~~avLIDVRs~~Ey~~GHIPG-AigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~I 357 (531)
..+...++.+|||||++.||..+|||| ++ ++|+.++........ .+++++|
T Consensus 13 ~~~~~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~i 64 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDPI 64 (110)
T ss_pred HHhhccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCeE
Confidence 333345789999999999999999999 87 899877654332110 1579999
Q ss_pred EEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCceecc
Q 009585 358 IVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (531)
Q Consensus 358 VVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~ 402 (531)
|+||++|.||..++..|+.+||++++++.||+.+|...++|+...
T Consensus 65 vv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 65 VVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred EEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 999999999999999999999999989999999999999998763
No 40
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.66 E-value=2.3e-16 Score=133.85 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=67.9
Q ss_pred CCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeC
Q 009585 283 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 362 (531)
Q Consensus 283 ~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~ 362 (531)
++++++|||+|++.+|..+|||||+ |+|+..+...... ++ .+++++||+||+
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~---------------~~-----~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWV---------------RI-----PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHh---------------hC-----CCCCCeEEEEeC
Confidence 4567899999999999999999998 8887554211100 00 135889999999
Q ss_pred CCch--HHHHHHHHHHccCCceEEecchHHHHHH
Q 009585 363 DGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 363 sG~R--S~~AA~~L~~lGyknV~vLdGG~~AW~~ 394 (531)
+|.+ |..+++.|++.||++|++|+||+.+|++
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9986 6899999999999999999999999963
No 41
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.65 E-value=6.1e-16 Score=162.81 Aligned_cols=107 Identities=27% Similarity=0.374 Sum_probs=89.5
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhc
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk 349 (531)
..|+++++.+++++ +.+|||+|++.||..||||||+ |+|+.++....... +
T Consensus 3 ~~is~~el~~~l~~--~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~--------------~----- 53 (376)
T PRK08762 3 REISPAEARARAAQ--GAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIETH--------------L----- 53 (376)
T ss_pred ceeCHHHHHHHHhC--CCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhhh--------------c-----
Confidence 35899999999853 5899999999999999999998 88875543322211 1
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcCCceecccccc
Q 009585 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSET 406 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~~p~~ 406 (531)
.+++++||+||++|.||..+++.|+.+||++|++|+|||.+|+..|+|++..+...
T Consensus 54 -~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s 109 (376)
T PRK08762 54 -PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLT 109 (376)
T ss_pred -CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCC
Confidence 15789999999999999999999999999999999999999999999998764443
No 42
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.62 E-value=2.6e-16 Score=162.06 Aligned_cols=184 Identities=21% Similarity=0.271 Sum_probs=135.2
Q ss_pred eEEEee--ccCCCCCCccHHH--HHhHhhhcccceeeeccchHHHHHHHHHHHHHhcCcCC-CCCeeehhhhhhHHHHHH
Q 009585 183 FVVYYY--GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP-NDPIVPFVVFLGTSATLW 257 (531)
Q Consensus 183 ~~~~~y--G~~~~~lp~~i~~--~l~~~e~~ag~v~~~~G~~~~q~~~aie~l~~~lG~~~-~~pVv~~~~~vg~~aal~ 257 (531)
-+||-| ||||||++|++++ .+.+|.+ .| |++|+.+..+ +++++|.++-+.|+.+ -.|.++ +|-|..+-+.
T Consensus 196 LtvYny~~GPCYRClFP~Ppp~~~vt~C~d-gG-VlGpv~GviG-~mQALE~iKli~~~~~~~s~~ll--lfdg~~~~~r 270 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRCLFPNPPPPEAVTNCAD-GG-VLGPVTGVIG-CMQALETIKLIAGIGESLSGRLL--LFDGLSGHFR 270 (427)
T ss_pred eEEeecCCCceeeecCCCCcChHHhccccc-Cc-eeecchhhhh-HHHHHHHHHHHHccCccCCcceE--EEecccceeE
Confidence 456666 8999999999998 9999999 77 8999999999 7999999999998663 234442 1222222110
Q ss_pred HHHHH------------------HHh------cCC----------CCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCC
Q 009585 258 IFYWW------------------WTY------GGY----------SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGI 303 (531)
Q Consensus 258 ~~~~l------------------~~~------~gy----------~g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHI 303 (531)
.+-++ ..| ..+ ..+|+..++.+++++.+..++||||++.+|+-.|+
T Consensus 271 ~irlR~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~l 350 (427)
T KOG2017|consen 271 TIRLRSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRL 350 (427)
T ss_pred EEEeccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEec
Confidence 00010 000 001 24688889999998778899999999999999999
Q ss_pred CcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCC-ce
Q 009585 304 PDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVM-RA 382 (531)
Q Consensus 304 PGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyk-nV 382 (531)
|+|+ |||+.++.....+.. ... .-....+|+++|+.|+.|.+|++.|+..++. .|
T Consensus 351 P~av--------NIPL~~l~~~~~~~~------~~~----------~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~v 406 (427)
T KOG2017|consen 351 PEAV--------NIPLKELRSRSGKKL------QGD----------LNTESKDIFVICRRGNDSQRAVRILREKFPDSSV 406 (427)
T ss_pred cccc--------ccchhhhhhhhhhhh------ccc----------ccccCCCEEEEeCCCCchHHHHHHHHhhCCchhh
Confidence 9999 999988776544211 000 0134567999999999999999999976553 67
Q ss_pred EEecchHHHHHHc
Q 009585 383 FLVQGGFQSWVKE 395 (531)
Q Consensus 383 ~vLdGG~~AW~~a 395 (531)
+-+.||+.+|...
T Consensus 407 rDvigGl~~w~~~ 419 (427)
T KOG2017|consen 407 RDVIGGLKAWAAK 419 (427)
T ss_pred hhhhhHHHHHHHh
Confidence 7888999999864
No 43
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.61 E-value=1.7e-15 Score=132.78 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=78.0
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhc
Q 009585 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 271 ~ISp~El~elL~~~-~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk 349 (531)
.|+++++.+++... ++.+|||||++ ||..+|||||+ ++|+.++......+ ....++
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~----------~~~~~~---- 59 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQL----------VQLLSG---- 59 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHH----------HHHHhc----
Confidence 58899999998654 46789999999 99999999999 88887654333221 111222
Q ss_pred ccCCCceEEEEeC-CCchHHHHHHHHHH--------ccCCceEEecchHHHHHHc
Q 009585 350 IVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 350 ~l~kd~~IVVyC~-sG~RS~~AA~~L~~--------lGyknV~vLdGG~~AW~~a 395 (531)
+++++||+||. +|.|+..++..|.+ .||++|++|+||+.+|++.
T Consensus 60 --~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 60 --SKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred --CCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 56789999998 66799888887754 4999999999999999864
No 44
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.3e-15 Score=155.54 Aligned_cols=126 Identities=21% Similarity=0.216 Sum_probs=101.2
Q ss_pred ccCHHHHHHHHhCC----CCcEEEEcCCh--hhhhhcCCCcccccccccccccCccccc-ch--hhhhhcCchhhhhHHH
Q 009585 271 DLSPKSTLELLRGK----ENAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVG-GS--VKKLLRGGRELDDTLT 341 (531)
Q Consensus 271 ~ISp~El~elL~~~----~~avLIDVRs~--~Ey~~GHIPGAigAv~i~~~NIPl~el~-~~--l~~ll~~~~eL~~~L~ 341 (531)
-++++.+.+.+... .++.+++++.. .+|.++|||||+ .+++..+. .. ...+++++++|++++.
T Consensus 12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 47788888877421 26677777665 899999999987 44443222 22 3577899999999999
Q ss_pred HHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCceEEecchHHHHHHcCCceecccccchhhh
Q 009585 342 AAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTI 410 (531)
Q Consensus 342 a~GI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~~p~~a~s~ 410 (531)
++|| ..+++||+|++.+. .|.+++|.|+.+|+++|++|+||+.+|+++|+|++..+|..+.+.
T Consensus 84 ~~GI------~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~ 147 (285)
T COG2897 84 ELGI------RNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTT 147 (285)
T ss_pred HcCC------CCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCcc
Confidence 9999 58999999996655 889999999999999999999999999999999999877765544
No 45
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.60 E-value=4e-16 Score=163.45 Aligned_cols=172 Identities=22% Similarity=0.249 Sum_probs=117.9
Q ss_pred ccCCCCCCccHHH--HHhHhhhcccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhhhHHHHHHH------
Q 009585 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWI------ 258 (531)
Q Consensus 189 G~~~~~lp~~i~~--~l~~~e~~ag~v~~~~G~~~~q~~~aie~l~~~lG~~~--~~pVv~~~~~vg~~aal~~------ 258 (531)
|||++|++|+..+ ....|.. .| |++|.-+... +.++.|.++-++|+.+ ...++.+..+-...-.+-+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c~~-~g-v~g~~~~~~g-~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~ 242 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSCSQ-AG-VLGPVVGVVG-SAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVVGNPAV 242 (355)
T ss_pred CCCHHHhCCCCCCccCCCCccc-cC-cchhHHHHHH-HHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEeccCCCCC
Confidence 5899999887542 2334555 66 8899888888 6888899998888643 3445543322111000000
Q ss_pred ---H-HHH-HHh--cCCCCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhc
Q 009585 259 ---F-YWW-WTY--GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 331 (531)
Q Consensus 259 ---~-~~l-~~~--~gy~g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~ 331 (531)
. +.. +.. .+....++++++.++. ++.+|||+|+++||..+|||||+ |+|+.++......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~~~--- 308 (355)
T PRK05597 243 LERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGANP--- 308 (355)
T ss_pred ccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhcccc---
Confidence 0 000 000 0111246677777543 46899999999999999999999 8998655432110
Q ss_pred CchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHH
Q 009585 332 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 332 ~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~ 394 (531)
. .++++++||+||++|.||..+++.|+.+||++|++|+||+.+|.+
T Consensus 309 -----------~------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 309 -----------P------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred -----------c------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 0 125788999999999999999999999999999999999999975
No 46
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.60 E-value=1.9e-15 Score=123.67 Aligned_cols=87 Identities=30% Similarity=0.457 Sum_probs=71.3
Q ss_pred HHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceE
Q 009585 278 LELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKV 357 (531)
Q Consensus 278 ~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~I 357 (531)
..++. .++..|||+|++.+|..+|||||+ ++|...+.... ... ..+++++|
T Consensus 3 ~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~--------------~~~------~~~~~~~v 53 (89)
T cd00158 3 KELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERA--------------ALL------ELDKDKPI 53 (89)
T ss_pred HHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHH--------------Hhh------ccCCCCeE
Confidence 34453 568999999999999999999998 88875443221 011 12688999
Q ss_pred EEEeCCCchHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 358 IVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 358 VVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
|+||..|.++..+++.|+.+||+++++|+||+.+|.
T Consensus 54 v~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 54 VVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 999999999999999999999999999999999994
No 47
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.59 E-value=3.6e-15 Score=130.32 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=68.2
Q ss_pred CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCC
Q 009585 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (531)
Q Consensus 285 ~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG 364 (531)
....+||+|+++||..||||||+ |+|+.++...+.... .+++++||+||++|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~~--------------------~~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATAV--------------------PDKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHhC--------------------CCCCCeEEEEeCCC
Confidence 45689999999999999999999 999866544332211 14678999999999
Q ss_pred chHHHHHHHHHHccCCceEEecchHHHHHH
Q 009585 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 365 ~RS~~AA~~L~~lGyknV~vLdGG~~AW~~ 394 (531)
.||..++..|+.+||++++++ ||+.+|..
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999985 99999975
No 48
>PRK01415 hypothetical protein; Validated
Probab=99.58 E-value=5e-15 Score=148.49 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=82.9
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcc
Q 009585 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~ 350 (531)
.|+|.++.+++. +++++|||||++.||..||||||+ |+|+..|.....+. .. ...
T Consensus 113 ~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~~-------~~---------~~~ 167 (247)
T PRK01415 113 YIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAWV-------QQ---------NQE 167 (247)
T ss_pred ccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHHH-------hh---------hhh
Confidence 589999999995 578999999999999999999999 88876554311110 00 011
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHc
Q 009585 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~a 395 (531)
.+++++|++||.+|.||..++..|+++||++|+.|.||+.+|.+.
T Consensus 168 ~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 168 LLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred hcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 368899999999999999999999999999999999999999875
No 49
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.57 E-value=5e-15 Score=129.93 Aligned_cols=98 Identities=18% Similarity=0.313 Sum_probs=74.1
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHH
Q 009585 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (531)
Q Consensus 271 ~ISp~El~elL~~~-----~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI 345 (531)
.|+++++.+++.++ ++.+|||||++ ||..+|||||+ |+|+.++..++...+ .....
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~~----------~~~~~ 63 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQVY----------ALFSL 63 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHHH----------HHhhh
Confidence 58999999999654 46899999999 99999999999 899876554333221 11111
Q ss_pred hhhcccCCCceEEEEeCC-CchHHHHHHHHH----HccC--CceEEecchHHHHH
Q 009585 346 RNLKIVQDRSKVIVMDAD-GTRSKGIARSLR----KLGV--MRAFLVQGGFQSWV 393 (531)
Q Consensus 346 ~~Lk~l~kd~~IVVyC~s-G~RS~~AA~~L~----~lGy--knV~vLdGG~~AW~ 393 (531)
.+.++||+||.+ |.||..++..|. +.|| .++++|+||+.+|.
T Consensus 64 ------~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 64 ------AGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ------cCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 356789999986 578888776544 4475 78999999999996
No 50
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.55 E-value=1.1e-14 Score=146.76 Aligned_cols=102 Identities=13% Similarity=0.176 Sum_probs=82.6
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHH
Q 009585 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (531)
Q Consensus 270 g~ISp~El~elL~~~-----~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~G 344 (531)
..+++.++.+++++. ++.+|||||++.||..||||||+ |+|+.+|.....++. ..
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l~-------~~----- 169 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEALA-------AH----- 169 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHHH-------hh-----
Confidence 468999999988642 34799999999999999999999 999876654322211 00
Q ss_pred HhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHc
Q 009585 345 IRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 345 I~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~a 395 (531)
+.. .++++||+||.+|.||..++..|+..||++|++|.||+.+|.+.
T Consensus 170 ---~~~-~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 170 ---RAD-LAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred ---hhh-cCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 001 26889999999999999999999999999999999999999873
No 51
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.54 E-value=1.1e-14 Score=128.06 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=67.2
Q ss_pred CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCC
Q 009585 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (531)
Q Consensus 285 ~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG 364 (531)
.+-+|||+|++.||..+|||||+ |+|+.++...+.. .+. +++++||+||++|
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~~--------------l~~------~~~~~IVlyC~~G 70 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIAT--------------AVP------DKNDTVKLYCNAG 70 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHHh--------------cCC------CCCCeEEEEeCCC
Confidence 45689999999999999999999 8998654433221 111 4678999999999
Q ss_pred chHHHHHHHHHHccCCceEEecchHHHHHH
Q 009585 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 365 ~RS~~AA~~L~~lGyknV~vLdGG~~AW~~ 394 (531)
.||..+++.|.++||+++++ .||+.+|..
T Consensus 71 ~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 71 RQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred hHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 99999999999999999987 699999974
No 52
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.53 E-value=2.5e-14 Score=147.89 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=83.0
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhc
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk 349 (531)
..+++.++.+++. +++++|||||++.||..||||||+ |+|+..|.+....+ .. .++
T Consensus 112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~l-------~~---~~~----- 167 (314)
T PRK00142 112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPWV-------EE---NLD----- 167 (314)
T ss_pred cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHHH-------HH---hcC-----
Confidence 4689999999885 567999999999999999999999 88886654322111 00 111
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHc
Q 009585 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~a 395 (531)
..++++||+||.+|.|+..++..|+.+||++|++|+||+.+|...
T Consensus 168 -~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 168 -PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred -CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 247899999999999999999999999999999999999999874
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.52 E-value=6.3e-15 Score=155.38 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=115.5
Q ss_pred ccCCCCCCccHHH--HHhHhhhcccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhhhHHHHHHHHHHH--
Q 009585 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWW-- 262 (531)
Q Consensus 189 G~~~~~lp~~i~~--~l~~~e~~ag~v~~~~G~~~~q~~~aie~l~~~lG~~~--~~pVv~~~~~vg~~aal~~~~~l-- 262 (531)
++|++|++|+..+ .+..|.. +| |++|..+... +.++.|.++-++|+.+ ...++.+..+-.... .+-|.
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c~~-~g-vlg~~~~~ig-~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~---~~~~~~~ 255 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDCAT-AG-VLGATTAVIG-ALMATEAIKFLTGIGDVQPGTVLSYDALTATTR---SFRVGAD 255 (370)
T ss_pred CCCcHhhCCCCCccccCCCCcc-CC-cchhHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEE---EEEecCC
Confidence 5799999987532 2334533 56 7899988888 6888999998888743 345654332221100 00000
Q ss_pred ------HHh-cCC-CCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCC---cccccccccccccCcccccchhhhhhc
Q 009585 263 ------WTY-GGY-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSVKKLLR 331 (531)
Q Consensus 263 ------~~~-~gy-~g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIP---GAigAv~i~~~NIPl~el~~~l~~ll~ 331 (531)
..+ ..| ..+++++++.+++.+ ++.+|||||++.||+.+||| ||+ |+|+.++...... .
T Consensus 256 ~~c~~~~~~~~~~~~~~~~~~el~~~l~~-~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~-~- 324 (370)
T PRK05600 256 PARPLVTRLRPSYEAARTDTTSLIDATLN-GSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADI-L- 324 (370)
T ss_pred CCCCccccccCcchhcccCHHHHHHHHhc-CCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhh-h-
Confidence 000 011 126899999999854 46799999999999999999 477 8998776432100 0
Q ss_pred CchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCc-eEEecchHH
Q 009585 332 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQ 390 (531)
Q Consensus 332 ~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGykn-V~vLdGG~~ 390 (531)
..+...+++ +||+||++|.||..++..|+.+||++ |++|.|||.
T Consensus 325 --------------~~l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 325 --------------HALSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred --------------hhccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 001112344 89999999999999999999999986 999999985
No 54
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.42 E-value=7.5e-13 Score=119.04 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=73.6
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchh--------hhhhcCchhhhhHHH
Q 009585 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--------KKLLRGGRELDDTLT 341 (531)
Q Consensus 271 ~ISp~El~elL~~~-~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l--------~~ll~~~~eL~~~L~ 341 (531)
.|+|+++.++++.+ ++.+|||+|++.+|..+|||||+ ++|+..+.... ..+++.++..+.
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 69 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRRLQGGKILLQQLLSCPEDRDR--- 69 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHhhcccchhhhhhcCCHHHHHH---
Confidence 37899999999654 57999999999999999999998 77775422110 001111111111
Q ss_pred HHHHhhhcccCCCceEEEEeCCCch---------HHHHHHHHHH--ccCCceEEecchHHHHHH
Q 009585 342 AAVIRNLKIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 342 a~GI~~Lk~l~kd~~IVVyC~sG~R---------S~~AA~~L~~--lGyknV~vLdGG~~AW~~ 394 (531)
+.. .++++|||||.++.+ +..+++.|.. .|+.+|++|+|||.+|+.
T Consensus 70 ------l~~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 70 ------LRR-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred ------Hhc-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 111 257899999988764 5555566666 366899999999999976
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.10 E-value=3.3e-10 Score=115.07 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=97.4
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcC---------ChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHH
Q 009585 271 DLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVR---------s~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~ 341 (531)
-+++..+.+++.+ .+.+|||.. ...||..-|||||. +++...+... ....+.+++.++.|++-.+
T Consensus 6 iv~~~~v~~~~~~-~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~---~fdld~~~~~--s~~~~~~lp~~e~Fa~y~~ 79 (286)
T KOG1529|consen 6 IVSVKWVMENLGN-HGLRILDASWYFPPLRRIAEFEFLERHIPGAS---HFDLDIISYP--SSPYRHMLPTAEHFAEYAS 79 (286)
T ss_pred ccChHHHHHhCcC-CCeEEEeeeeecCchhhhhhhhhhhccCCCce---eeeccccccC--CCcccccCccHHHHHHHHH
Confidence 4677777777754 679999984 35678888999876 4444333221 1234566777888899999
Q ss_pred HHHHhhhcccCCCceEEEEeC--CCc-hHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccccc
Q 009585 342 AAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (531)
Q Consensus 342 a~GI~~Lk~l~kd~~IVVyC~--sG~-RS~~AA~~L~~lGyknV~vLdGG~~AW~~aGLPV~~~~p~ 405 (531)
.+|| ++++.+|||++ .|+ .|.+++|+++.+||++|..|+||+.+|+.+|+|+.+.++.
T Consensus 80 ~lGi------~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~ 140 (286)
T KOG1529|consen 80 RLGV------DNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVE 140 (286)
T ss_pred hcCC------CCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccccc
Confidence 9998 68889999999 777 7789999999999999999999999999999999987653
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.98 E-value=6.6e-10 Score=121.12 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=62.1
Q ss_pred CCcEEEEcCChhhhhhcCCCc----ccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEE
Q 009585 285 ENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVM 360 (531)
Q Consensus 285 ~~avLIDVRs~~Ey~~GHIPG----AigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVy 360 (531)
++.++||||+++||..+|||| |+ |+|+.++..... .+++++++|+|
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~----------------------~l~~~~~iivy 455 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFG----------------------DLDQSKTYLLY 455 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHh----------------------hcCCCCeEEEE
Confidence 578999999999999999999 87 899866543221 13678899999
Q ss_pred eCCCchHHHHHHHHHHccCCceEEecc
Q 009585 361 DADGTRSKGIARSLRKLGVMRAFLVQG 387 (531)
Q Consensus 361 C~sG~RS~~AA~~L~~lGyknV~vLdG 387 (531)
|++|.||..++..|+.+||+||++|.+
T Consensus 456 C~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 456 CDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred CCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 999999999999999999999998753
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.87 E-value=2.1e-09 Score=109.93 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=80.1
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcc
Q 009585 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~ 350 (531)
-|+|+++.+++ .+++.++||+|..-||.-||..||+ +.+...|.+...+...+ + .
T Consensus 114 yl~p~~wn~~l-~D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~v~~~---------------~-~ 168 (308)
T COG1054 114 YLSPKDWNELL-SDPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAWVEEN---------------L-D 168 (308)
T ss_pred ccCHHHHHHHh-cCCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHHHHHH---------------H-H
Confidence 37899999999 4688999999999999999999998 66655554433222110 0 1
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHc
Q 009585 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~a 395 (531)
.-++++|+.||.+|.|...+...|...||++||.|+||+-.+.+.
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 135679999999999999999999999999999999999888653
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.82 E-value=1.4e-08 Score=103.40 Aligned_cols=94 Identities=21% Similarity=0.255 Sum_probs=80.8
Q ss_pred CCcEEEEcCChhhhh-----------hcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCC
Q 009585 285 ENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (531)
Q Consensus 285 ~~avLIDVRs~~Ey~-----------~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~k 353 (531)
.+..+||.|+..+|. .||||||+ |+|+.++......+ +.++++..++...|+ ..
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~-k~~edl~~~f~~~~l------~~ 235 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFI-KPAEDLKHLFAQKGL------KL 235 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhccccccc-CCHHHHHHHHHhcCc------cc
Confidence 468999999998883 47999999 99998877655443 337889999988887 45
Q ss_pred CceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHH
Q 009585 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 354 d~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~ 394 (531)
++|+|+-|..|..+...+-.|.+.| .++.+|+|+|.+|..
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 8999999999999999999999999 699999999999974
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=2.5e-07 Score=95.97 Aligned_cols=103 Identities=23% Similarity=0.334 Sum_probs=73.5
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHH
Q 009585 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (531)
Q Consensus 270 g~ISp~El~elL~~~-----~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~G 344 (531)
..|+++.+..++++. ...+|||+|-|-||..|||+||+ |++..+......-. + . +
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f~~-~--~---------~ 215 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFFLL-K--D---------G 215 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhhcc-c--c---------c
Confidence 479999999999752 23679999999999999999998 87764432221100 0 0 0
Q ss_pred HhhhcccCCCceEEEEeC-CCchHHHHHHHHHH------------ccCCceEEecchHHHHHHc
Q 009585 345 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRK------------LGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 345 I~~Lk~l~kd~~IVVyC~-sG~RS~~AA~~L~~------------lGyknV~vLdGG~~AW~~a 395 (531)
. +...+...+||||. +-.|...+|+.|+. +-|..+|+|+|||..|-..
T Consensus 216 ~---~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 216 V---PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred c---ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 0 00123457899996 44588999999983 5567899999999999764
No 60
>COG2603 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=5.4e-07 Score=92.20 Aligned_cols=165 Identities=24% Similarity=0.241 Sum_probs=107.0
Q ss_pred CCcEEEEcCChhhhhhcCCCcccccccccccccCccccc--chhhhhhc---------------CchhhhhHHHHHHHhh
Q 009585 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG--GSVKKLLR---------------GGRELDDTLTAAVIRN 347 (531)
Q Consensus 285 ~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~--~~l~~ll~---------------~~~eL~~~L~a~GI~~ 347 (531)
.+..+||||.|.||..||.|+++ |.|.-.-. ..+..-.+ ..+-..+.+.++
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~as---- 81 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEAS---- 81 (334)
T ss_pred cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHH----
Confidence 46789999999999999999988 66651100 01110000 001111112111
Q ss_pred hcccCCCceEEEEe-CCCchHHHHHHHH-HHccCCceEEecchHHHHHHcCCceecccccchhhhchhhHHHHHhhhcCC
Q 009585 348 LKIVQDRSKVIVMD-ADGTRSKGIARSL-RKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSS 425 (531)
Q Consensus 348 Lk~l~kd~~IVVyC-~sG~RS~~AA~~L-~~lGyknV~vLdGG~~AW~~aGLPV~~~~p~~a~s~l~e~~~e~~~~i~p~ 425 (531)
++..-+.++-++| ++|.||...+..| ...|+ ++-.+.||+.+.+.- ...+++..++..
T Consensus 82 -k~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~-~~~r~iGGeKalrt~------------------~~~a~~~~i~~k 141 (334)
T COG2603 82 -KAFQEENPVGILCARGGLRSKIVQKWLGYAAGI-DYPRVIGGEKALRTF------------------AIQATIKEIAQK 141 (334)
T ss_pred -HHHHHhCCcceeeccccchhHHHHHHHHHHHHh-hhhhhhchHHHHHHH------------------HHHHHHHHhccC
Confidence 2233456777779 5666999999999 77888 455667999987642 133444556666
Q ss_pred CceEec---hhHHHHHHHHhcCChhhHHHHHHHhhccccccccchhhccCccccCCCCCCCCCChhHHHHHHHHHHHh
Q 009585 426 PVQFLG---FGVTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAK 500 (531)
Q Consensus 426 pv~vlG---~g~T~~~rl~~~~~~~~~~~Dl~~l~~p~~~~~~~~~~~~g~~~~~~~gl~~~ps~~~~~~~~~~~~~~ 500 (531)
++.+.| .|+|.. ++.|-.. +|+++++. |+|+.| | .=+-+-|+|++||+++--..-+
T Consensus 142 ~~il~g~Tgcgkt~l--ve~lp~a----idlE~~a~---h~gssF----G------rt~~~q~~qkafE~~l~i~el~ 200 (334)
T COG2603 142 DFILCGCTGCGKTEL--VEQLPNA----IDLEGLAN---HRGSSF----G------RTLEPQPSQKAFENVLAIEELK 200 (334)
T ss_pred CEEEeCCCCCcHHHH--HHhCCCc----cCcHhHHH---HHHHHH----H------HhcCcCccHHHHHHHHHHHHHH
Confidence 777775 466654 4455554 79999999 999999 5 5678899999999986443333
No 61
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.19 E-value=0.00063 Score=70.92 Aligned_cols=99 Identities=16% Similarity=0.264 Sum_probs=69.9
Q ss_pred CCccCHHHHHHHHhCC-----CCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHH
Q 009585 269 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (531)
Q Consensus 269 ~g~ISp~El~elL~~~-----~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~ 343 (531)
..+|+++.++.++++. -+.+|||+|-+-||..|||-.|+ ||.-.. .+. .+|
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~~---~l~----------~~F--- 296 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISSTK---KLG----------LLF--- 296 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchHH---HHH----------HHH---
Confidence 3689999999988643 24679999999999999999988 764311 111 111
Q ss_pred HHhhhcccCCCceEEEEeC-CCchHHHHHHHHHHc------------cCCceEEecchHHHHHH
Q 009585 344 VIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 344 GI~~Lk~l~kd~~IVVyC~-sG~RS~~AA~~L~~l------------GyknV~vLdGG~~AW~~ 394 (531)
+. |.+.--+-+|+.|. +..|+.++|..|+.+ =|..||+|+|||+++-.
T Consensus 297 -~h--kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 297 -RH--KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred -Hh--ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 00 11123456899996 456999999988632 35689999999998765
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=92.71 E-value=0.34 Score=44.49 Aligned_cols=111 Identities=16% Similarity=0.168 Sum_probs=58.4
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcc------cccccccccccCcccccchhhhhhcCchhhhhHHHHH
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGA------igAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~ 343 (531)
+.++++++..+.+ .+=-.|||.|+..|.... |.. .....+.|.++|+.. ..+ +++.+......+
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~~--p~~~~~~~~a~~~gl~y~~iPv~~--~~~-----~~~~v~~f~~~~ 82 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEESQ--PDFAQIKAAAEAAGVTYHHQPVTA--GDI-----TPDDVETFRAAI 82 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCCCC--CCHHHHHHHHHHCCCeEEEeecCC--CCC-----CHHHHHHHHHHH
Confidence 5789998877653 344679999998774422 211 001123444666521 111 111221111111
Q ss_pred HHhhhcccCCCceEEEEeCCCchHHHHHHH-HHHccCCceEEecchHHHHHHcCCceec
Q 009585 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARS-LRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (531)
Q Consensus 344 GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~-L~~lGyknV~vLdGG~~AW~~aGLPV~~ 401 (531)
. ..+.||++||.+|.|+..++.+ +...|...-.+ +..=++.|+.+..
T Consensus 83 ~-------~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i----~~~~~~~G~~~~~ 130 (135)
T TIGR01244 83 G-------AAEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEI----VRRAQAAGYDLSN 130 (135)
T ss_pred H-------hCCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHcCCCccc
Confidence 1 2357999999999998776644 34456532111 2233556666654
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=92.30 E-value=0.13 Score=46.19 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=40.4
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcc------cccccccccccCcccccchhhhhhcCchhhhhHHHH
Q 009585 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 342 (531)
Q Consensus 269 ~g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGA------igAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a 342 (531)
.+.++++++.++.+ .+=-.||+.|+..|-. +-|.. ..+.-+.|.++|+..- .+ ..+.++.....
T Consensus 12 s~Q~~~~d~~~la~-~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~-----~~~~v~~f~~~ 81 (110)
T PF04273_consen 12 SGQPSPEDLAQLAA-QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGG--AI-----TEEDVEAFADA 81 (110)
T ss_dssp ECS--HHHHHHHHH-CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TT--T-------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCC--CC-----CHHHHHHHHHH
Confidence 36799999998775 3445799999876532 22221 1123345667776321 11 11222222111
Q ss_pred HHHhhhcccCCCceEEEEeCCCchHHHHHHH
Q 009585 343 AVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (531)
Q Consensus 343 ~GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~ 373 (531)
+ . ...+||++||++|.|+...|.+
T Consensus 82 l-----~--~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 82 L-----E--SLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp H-----H--TTTTSEEEE-SCSHHHHHHHHH
T ss_pred H-----H--hCCCCEEEECCCChhHHHHHHH
Confidence 1 1 2346999999999999766544
No 64
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=90.95 E-value=0.54 Score=43.31 Aligned_cols=98 Identities=11% Similarity=-0.015 Sum_probs=57.5
Q ss_pred hhHHHHHHHHH----hhhhhcccCcce--------EEEee------------ccCCCCCCccHHHHHhHhhhcccceeee
Q 009585 161 AAVDVLRNTIV----ALEESMTNGASF--------VVYYY------------GTTKESLPPEIRDALNLYEDRAVKLWRP 216 (531)
Q Consensus 161 ~~~d~l~~~~~----~~~~~~~~~~~~--------~~~~y------------G~~~~~lp~~i~~~l~~~e~~ag~v~~~ 216 (531)
|+.++|++.+. .-...|.|.|++ ..|.= ||++.....++.+.++. .+....+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~----~~~~~~~ 76 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDE----AGFEESM 76 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCc----CCCCCCC
Confidence 45678888875 234567888875 44543 89998887777654322 1211111
Q ss_pred ccchHHHHHHHHHHHHHhcCcCCCCCeeehhhh--hhHHHHHHHHHHHHHhcCCC
Q 009585 217 VGSALQQVSVAIEGLERSLGFDPNDPIVPFVVF--LGTSATLWIFYWWWTYGGYS 269 (531)
Q Consensus 217 ~G~~~~q~~~aie~l~~~lG~~~~~pVv~~~~~--vg~~aal~~~~~l~~~~gy~ 269 (531)
... ...++.+...+|++++++||+|... .|..++. +||.+++.|+.
T Consensus 77 ~p~-----~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r--~~~~l~~~G~~ 124 (138)
T cd01445 77 EPS-----EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACH--IALAARLCGHP 124 (138)
T ss_pred CCC-----HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHH--HHHHHHHcCCC
Confidence 111 2345566677899999999987642 1222222 45666666653
No 65
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=87.39 E-value=0.077 Score=44.98 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=31.6
Q ss_pred ccCCCCCCccHHHHHhHhhhcccceeeeccchHHHHHHHHHHHHHhcCc
Q 009585 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (531)
Q Consensus 189 G~~~~~lp~~i~~~l~~~e~~ag~v~~~~G~~~~q~~~aie~l~~~lG~ 237 (531)
+|||||++|+.......|.+ .| |++++-+... +.++.|.++-++|+
T Consensus 3 ~pC~rCl~p~~~~~~~~C~~-~G-Vlg~~~giig-slqA~eaik~l~g~ 48 (84)
T PF05237_consen 3 TPCYRCLFPEPPESAPTCAE-AG-VLGPVVGIIG-SLQANEAIKLLLGI 48 (84)
T ss_dssp ---HHHHHTTSS--TTSSST-S--B-HHHHHHHH-HHHHHHHHHHHCT-
T ss_pred CceehhcCCCCCccCCCccc-cc-cccchHHHHH-HHHHHHHHHHHHhc
Confidence 68999999999666667777 67 8888888888 68888888888875
No 66
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=84.99 E-value=0.37 Score=54.23 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=59.0
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhc
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk 349 (531)
.+|+++++..+ +...++|.|...||..+|+++++ |+|...-+....++.. + .++.+
T Consensus 622 prmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~----l------~~~~~-- 677 (725)
T KOG1093|consen 622 PRISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRF----L------PGIVC-- 677 (725)
T ss_pred ccccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhc----c------hHhHH--
Confidence 34555555443 34689999999999999999999 9998633333333221 1 11110
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHH
Q 009585 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW 392 (531)
..+..++++.....-+......+..+-+.+..++.+|+.+.
T Consensus 678 --~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 678 --SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred --hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 13455666554444444444455555577778888888843
No 67
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=84.83 E-value=0.74 Score=47.71 Aligned_cols=100 Identities=22% Similarity=0.244 Sum_probs=53.4
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccc--------hhhhhhcCchhhhhHHHHH
Q 009585 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG--------SVKKLLRGGRELDDTLTAA 343 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~--------~l~~ll~~~~eL~~~L~a~ 343 (531)
++.+++.+.+. .++.+++|+|+ +..||.+|+ ++.++.+.. .++.++|+..+...
T Consensus 6 ~s~~wlnr~l~-~~nllllDCRs----es~~i~~A~--------~valPalmlrrl~~g~l~~ra~~p~~~d~~~----- 67 (343)
T KOG1717|consen 6 KSVAWLNRQLE-LGNLLLLDCRS----ESSHIESAI--------NVALPALMLRRLTGGNLPVRALFPRSCDDKR----- 67 (343)
T ss_pred HHHHHHHhhcc-cCceEEEecCC----ccchhhhhh--------hhcchHHHHHHHhCCCCcceeccCCcccccc-----
Confidence 44555555553 46799999999 456788776 333222210 11122222111100
Q ss_pred HHhhhcccCCCceEEEEeCCCc------h-HH---HHHHHHHHccCCceEEecchHHHHHH
Q 009585 344 VIRNLKIVQDRSKVIVMDADGT------R-SK---GIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 344 GI~~Lk~l~kd~~IVVyC~sG~------R-S~---~AA~~L~~lGyknV~vLdGG~~AW~~ 394 (531)
.+.-.+...+|.|+.+.. . .. ..-+.++..|+ .++.|.|||..++.
T Consensus 68 ----~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 68 ----FPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQA 123 (343)
T ss_pred ----ccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhh
Confidence 000023467899987611 1 11 12244577898 79999999987765
No 68
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=83.50 E-value=0.16 Score=53.30 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=40.3
Q ss_pred CCCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhh
Q 009585 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 330 (531)
Q Consensus 268 y~g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll 330 (531)
|..-=+|+++.+.+. ....++|+|.+..|..+||||++ ++|...+..+.+++.
T Consensus 12 f~~i~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~ 64 (314)
T PRK00142 12 YTPIEDPEAFRDEHL--ALCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLK 64 (314)
T ss_pred cccCCCHHHHHHHHH--HHHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHh
Confidence 433345778877775 35678999999999999999999 888866666666554
No 69
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=82.25 E-value=5.6 Score=37.19 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=43.5
Q ss_pred CCCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcC---CCcccccccccccccCccc--------ccc------------
Q 009585 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDG---IPDLRRGARFRYASVYLPE--------VGG------------ 324 (531)
Q Consensus 268 y~g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GH---IPGAigAv~i~~~NIPl~e--------l~~------------ 324 (531)
....+|+++...+. +-.=-.|||.|++.|..... ++|.. +.++|+.. +..
T Consensus 26 ~l~~lt~~d~~~L~-~lgI~tIiDLRs~~E~~~~p~~~~~g~~------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (164)
T PF13350_consen 26 NLSNLTEADLERLR-ELGIRTIIDLRSPTERERAPDPLIDGVQ------YVHIPIFGDDASSPDKLAELLQSSADAPRGM 98 (164)
T ss_dssp --TT--HHHHHHHH-HTT--EEEE-S-HHHHHHHS----TT-E------EEE--SS-S-TTH----------HHHHHHHH
T ss_pred CcCcCCHHHHHHHH-hCCCCEEEECCCccccccCCCCCcCCce------eeeecccccccccccccccccccccchhhHH
Confidence 34578899887665 33345799999999987652 33321 22333310 000
Q ss_pred --hhhhhhcC-chhhhhHHHHHHHhhhcccCCCceEEEEeCCCc-hHH-HHHHHHHHccCC
Q 009585 325 --SVKKLLRG-GRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSK-GIARSLRKLGVM 380 (531)
Q Consensus 325 --~l~~ll~~-~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG~-RS~-~AA~~L~~lGyk 380 (531)
....++.. ...+.+.|..+- +...+++++|..|. |.. .++-.|..+|..
T Consensus 99 ~~~Y~~~~~~~~~~~~~~~~~l~-------~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 99 LEFYREMLESYAEAYRKIFELLA-------DAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHH--------TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc-------cCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 00111112 334444443221 22369999999887 554 455667888875
No 70
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=79.07 E-value=6.3 Score=43.69 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=50.9
Q ss_pred CcEEEEcCChhhhhhcCCCcccccccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccC-----CCceEEEE
Q 009585 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ-----DRSKVIVM 360 (531)
Q Consensus 286 ~avLIDVRs~~Ey~~GHIPGAigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~-----kd~~IVVy 360 (531)
+..+||+|+.++|..||+-.|. |.. ..-++.+|.+|+..+..+--..-+.+. .+..+.++
T Consensus 326 rFFiVDcRpaeqynaGHlstaF--------hlD-------c~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfm 390 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAF--------HLD-------CVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFM 390 (669)
T ss_pred EEEEEeccchhhcccccchhhh--------ccc-------HHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEe
Confidence 3679999999999999998764 321 122344555555544433211000111 22344444
Q ss_pred eCCCc------hHHHHHHHHHHccCCceEEecchHHHHH
Q 009585 361 DADGT------RSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 361 C~sG~------RS~~AA~~L~~lGyknV~vLdGG~~AW~ 393 (531)
.+|. .-..+|..|.+. -..|..+.|||....
T Consensus 391 -GsGr~EED~YmnMviA~FlQKn-k~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 391 -GSGRDEEDNYMNMVIAMFLQKN-KLYVSFVQGGYKKLH 427 (669)
T ss_pred -ccCcchHHHHHHHHHHHHHhcC-ceEEEEecchHHHHH
Confidence 4443 223445555544 337889999998765
No 71
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=76.28 E-value=0.54 Score=49.78 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=69.9
Q ss_pred ccCCCCCCccHHHHHhHhhhcccceeeeccchHHHHHHHHHHHHHhcCcCC--CCCeeehhhhhhHHH------------
Q 009585 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSA------------ 254 (531)
Q Consensus 189 G~~~~~lp~~i~~~l~~~e~~ag~v~~~~G~~~~q~~~aie~l~~~lG~~~--~~pVv~~~~~vg~~a------------ 254 (531)
++|++|+.++....-..|.. +| |+.|.-+... +.++.|.++-++|... ...++.+..+-....
T Consensus 164 ~pC~~Cl~~~~~~~~~~c~~-~g-v~~p~~~~i~-~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~C 240 (339)
T PRK07688 164 TPCLRCLLQSIPLGGATCDT-AG-IISPAVQIVA-SYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDNC 240 (339)
T ss_pred CCCeEeecCCCCCCCCCCcc-CC-cccHHHHHHH-HHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCCC
Confidence 58999998876543334544 56 7888888777 6788888887777532 233443332221000
Q ss_pred -HHH-------HHHH------HHHh-------cCCCCccCHHHHHHHHhC-----CCCcEEEEcCChhhhhhcCCCccc
Q 009585 255 -TLW-------IFYW------WWTY-------GGYSGDLSPKSTLELLRG-----KENAVLIDVRHEDLRERDGIPDLR 307 (531)
Q Consensus 255 -al~-------~~~~------l~~~-------~gy~g~ISp~El~elL~~-----~~~avLIDVRs~~Ey~~GHIPGAi 307 (531)
.+. .-+- .+-- .+....++++++.++++. ..+..+||||++. |+-.++|+-+
T Consensus 241 p~Cg~~~~~~~~~~~~~~~~~~lcg~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 241 PSCGEKALYPYLNYENTTKTAVLCGRNTVQIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CCCCCCCCccccchhhccchhhhcCccccccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 000 0000 0000 011246899999988842 3578999999998 9999999864
No 72
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=75.90 E-value=8.7 Score=34.01 Aligned_cols=27 Identities=37% Similarity=0.485 Sum_probs=18.9
Q ss_pred CCceEEEEeCCCc-hHHH--HHHHHHHccC
Q 009585 353 DRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (531)
Q Consensus 353 kd~~IVVyC~sG~-RS~~--AA~~L~~lGy 379 (531)
.+.+|+|+|..|. ||.. +++.+...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999887 7764 3455555554
No 73
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.35 E-value=27 Score=39.33 Aligned_cols=106 Identities=24% Similarity=0.384 Sum_probs=64.3
Q ss_pred hhcccchhhhhhhhhhhhhhhhhhhhHHHHHhHhhhhhhHHHhhhhhhHHHhhhhhhheeccccccCccCCCccccc---
Q 009585 72 SNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFS--- 148 (531)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--- 148 (531)
+..+..++-++..|+--++..--+ |.=+...||++|--+ |.||+.+- .-.++-.+|-+ ++.|.++-+||
T Consensus 271 ~~~~k~~g~aFg~fkglvG~K~L~-eeDL~pvL~kM~ehL--itKNVA~e---iA~~LcEsV~a--~Legkkv~sfs~V~ 342 (587)
T KOG0781|consen 271 AATKKTVGGAFGLFKGLVGSKSLS-EEDLNPVLDKMTEHL--ITKNVAAE---IAEKLCESVAA--SLEGKKVGSFSTVE 342 (587)
T ss_pred hhhhcchhhHHHHHHhhccccccc-HhhhHHHHHHHHHHH--HhhhhhHH---HHHHHHHHHHH--HhhhcccccchHHH
Confidence 445556777777776644433222 444666677776542 33443221 11233333333 57788877775
Q ss_pred chhHHhhhhc------cchhHHHHHHHHHhhhhhcccCcceEEEeec
Q 009585 149 TDLKEASSKA------TVAAVDVLRNTIVALEESMTNGASFVVYYYG 189 (531)
Q Consensus 149 ~~~~~~~~~~------~~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG 189 (531)
+..|+|...| +..++|.||.-+.+=+. .+|||+-.-|
T Consensus 343 ~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~~----krPYVi~fvG 385 (587)
T KOG0781|consen 343 STVKEALRDALVQILTPQRSVDLLRDIMSARRR----KRPYVISFVG 385 (587)
T ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc----CCCeEEEEEe
Confidence 5566665544 77999999998877654 4999998877
No 74
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=60.56 E-value=1.3 Score=41.08 Aligned_cols=10 Identities=40% Similarity=0.494 Sum_probs=3.6
Q ss_pred HHHHHhhhhh
Q 009585 167 RNTIVALEES 176 (531)
Q Consensus 167 ~~~~~~~~~~ 176 (531)
+..+..+...
T Consensus 110 ~~~~~~~~~~ 119 (202)
T PF01442_consen 110 EEEVDELEES 119 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 75
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=56.89 E-value=7.6 Score=35.01 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.0
Q ss_pred EEEEeCCCc-hHHHHHHHHHHc----cCCceEEecchHHHH
Q 009585 357 VIVMDADGT-RSKGIARSLRKL----GVMRAFLVQGGFQSW 392 (531)
Q Consensus 357 IVVyC~sG~-RS~~AA~~L~~l----GyknV~vLdGG~~AW 392 (531)
|+|+|.++. ||..|-..|+.+ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 689997654 999998888888 677899999998877
No 76
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=53.88 E-value=23 Score=37.36 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=26.7
Q ss_pred ccCHHHHHHHHhCCCCcEEEEcCChhhhhh---cCCC
Q 009585 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP 304 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~~Ey~~---GHIP 304 (531)
.+...++.+.+.+ .+..+||+|+..+|.. ||||
T Consensus 137 g~gKt~Ll~~L~~-~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 137 GSGKTELLHALAN-AGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CcCHHHHHHHHhc-CCCeEEECCchHHhcCcccCCCC
Confidence 3567788888853 4689999999999987 8888
No 77
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=53.86 E-value=42 Score=29.93 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=21.1
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccC
Q 009585 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (531)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~--AA~~L~~lGy 379 (531)
..+.+|+|+|..|. ||.. +++.++..|+
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 46789999999986 7754 5566677776
No 78
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=51.85 E-value=20 Score=33.48 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=23.6
Q ss_pred CCCceEEEEe-C----CCchHHHHHHHHHHccCCceEEecchHHHH
Q 009585 352 QDRSKVIVMD-A----DGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (531)
Q Consensus 352 ~kd~~IVVyC-~----sG~RS~~AA~~L~~lGyknV~vLdGG~~AW 392 (531)
+++.+++++| . .|..-..++..|+.+|..++.+|+||-...
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 3454555555 5 356778899999999999999999987543
No 79
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=46.89 E-value=24 Score=36.42 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCceEE
Q 009585 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFL 384 (531)
Q Consensus 352 ~kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~v 384 (531)
.++..+++||+.-.........|++.||.++..
T Consensus 186 kpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 186 KPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 467899999999889999999999999976543
No 80
>PRK08223 hypothetical protein; Validated
Probab=46.39 E-value=12 Score=39.25 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=11.8
Q ss_pred eEEEeeccCCCCCCcc
Q 009585 183 FVVYYYGTTKESLPPE 198 (531)
Q Consensus 183 ~~~~~yG~~~~~lp~~ 198 (531)
++++..||||+|++|+
T Consensus 160 ~v~~p~~p~~~~~f~~ 175 (287)
T PRK08223 160 LVFDPGGMSFDDYFDL 175 (287)
T ss_pred EEEcCCCCchhhhcCC
Confidence 3444468999999876
No 81
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=45.93 E-value=19 Score=31.45 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhhcccCcce-------EEEeeccCCCCCCccHHHHHhHhhhcccceeeeccchHHHHHHHHHHHHHhc
Q 009585 163 VDVLRNTIVALEESMTNGASF-------VVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSL 235 (531)
Q Consensus 163 ~d~l~~~~~~~~~~~~~~~~~-------~~~~yG~~~~~lp~~i~~~l~~~e~~ag~v~~~~G~~~~q~~~aie~l~~~l 235 (531)
.+.|++.+..-...|.|.|+. -.|..||++..+.....+.........+. .. ....++......
T Consensus 4 ~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~ 74 (122)
T cd01448 4 PDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHM--------LP-SPEEFAELLGSL 74 (122)
T ss_pred HHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCC--------CC-CHHHHHHHHHHc
Confidence 455566554434457888877 66777888887766555543322111221 11 123344444556
Q ss_pred CcCCCCCeeehhhhhhHHHHHHHHHHHHHhcCCC
Q 009585 236 GFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS 269 (531)
Q Consensus 236 G~~~~~pVv~~~~~vg~~aal~~~~~l~~~~gy~ 269 (531)
+++.+.+|++|.-.-+..+.. .++.++..||.
T Consensus 75 ~~~~~~~vv~~c~~g~~~a~~--~~~~l~~~G~~ 106 (122)
T cd01448 75 GISNDDTVVVYDDGGGFFAAR--AWWTLRYFGHE 106 (122)
T ss_pred CCCCCCEEEEECCCCCccHHH--HHHHHHHcCCC
Confidence 888999998754221122211 34555555653
No 82
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=45.80 E-value=33 Score=32.58 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=33.0
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCceEE--ecch----------HHHHHHcCCceecc
Q 009585 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFL--VQGG----------FQSWVKEGLRIKEL 402 (531)
Q Consensus 352 ~kd~~IVVyC~sG~---RS~~AA~~L~~lGyknV~v--LdGG----------~~AW~~aGLPV~~~ 402 (531)
++..+|+++|..|+ ....+|+.|...|+ +|.+ +... +..+++.|.++...
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGY-NVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTC-EEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCC-eEEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 57789999998776 66789999999999 4665 2211 34556666666553
No 83
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=45.65 E-value=21 Score=32.32 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=28.6
Q ss_pred EEEEeCCCc-hHHHHHHHHHHccCCceEEecchHHHH
Q 009585 357 VIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (531)
Q Consensus 357 IVVyC~sG~-RS~~AA~~L~~lGyknV~vLdGG~~AW 392 (531)
|+++|.+.. ||..|..+|+.+.-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578996554 999999999887644688888888877
No 84
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=42.55 E-value=59 Score=31.70 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=33.1
Q ss_pred EEEcCChhhhhhcCCCcccc---cccccccccCcccccchhhhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCCc
Q 009585 289 LIDVRHEDLRERDGIPDLRR---GARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT 365 (531)
Q Consensus 289 LIDVRs~~Ey~~GHIPGAig---Av~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI~~Lk~l~kd~~IVVyC~sG~ 365 (531)
||=.-+..|+..-.+|+-.. +.-+.|-++|+++.... +...+.+.+..+. . .+..+++|+++|.+|.
T Consensus 75 Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aP------d~~~~~~i~~eL~-~---~L~~g~~V~vHC~GGl 144 (168)
T PF05706_consen 75 VVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAP------DFAAAWQILEELA-A---RLENGRKVLVHCRGGL 144 (168)
T ss_dssp EEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---------HHHHHHHHHHHH-H---HHHTT--EEEE-SSSS
T ss_pred EEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCC------CHHHHHHHHHHHH-H---HHHcCCEEEEECCCCC
Confidence 34466677777666665421 11234446666443211 1111111221111 1 1246789999999887
Q ss_pred -hHHH-HHHHHHHcc
Q 009585 366 -RSKG-IARSLRKLG 378 (531)
Q Consensus 366 -RS~~-AA~~L~~lG 378 (531)
|+.. ||..|..+|
T Consensus 145 GRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 145 GRTGLVAACLLLELG 159 (168)
T ss_dssp SHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHc
Confidence 7754 666777766
No 85
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=42.54 E-value=41 Score=33.60 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=24.9
Q ss_pred CceEEEEeCCCc---hHHHHHHHHHHccCCceEEe
Q 009585 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (531)
Q Consensus 354 d~~IVVyC~sG~---RS~~AA~~L~~lGyknV~vL 385 (531)
.++|+++|..|+ ....+|+.|+..|+ .|.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~-~V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGY-AVTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCC-ceEEE
Confidence 578999997655 77889999999998 56544
No 86
>PLN02727 NAD kinase
Probab=42.47 E-value=40 Score=40.71 Aligned_cols=84 Identities=10% Similarity=0.151 Sum_probs=44.4
Q ss_pred CccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCc----ccccccccccccCcccccchhhhhhcCchhhhhHHHHHHH
Q 009585 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (531)
Q Consensus 270 g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPG----AigAv~i~~~NIPl~el~~~l~~ll~~~~eL~~~L~a~GI 345 (531)
+.++++++..+.+ ..=-.||+.|+..|- .+..+- +..+.-+.+.++|+..-.. +.++++++....+.=
T Consensus 267 gQpspe~la~LA~-~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~a------pt~EqVe~fa~~l~~ 338 (986)
T PLN02727 267 GQVTEEGLKWLLE-KGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTA------PSAEQVEKFASLVSD 338 (986)
T ss_pred CCCCHHHHHHHHH-CCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCC------CCHHHHHHHHHHHHh
Confidence 6799999977764 334579999997762 222111 1111223455676522111 112222222211100
Q ss_pred hhhcccCCCceEEEEeCCCchH
Q 009585 346 RNLKIVQDRSKVIVMDADGTRS 367 (531)
Q Consensus 346 ~~Lk~l~kd~~IVVyC~sG~RS 367 (531)
.-.+||++||++|.|.
T Consensus 339 ------slpkPVLvHCKSGarR 354 (986)
T PLN02727 339 ------SSKKPIYLHSKEGVWR 354 (986)
T ss_pred ------hcCCCEEEECCCCCch
Confidence 2467999999999933
No 87
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=42.32 E-value=48 Score=29.21 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=21.2
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccCC
Q 009585 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (531)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~--AA~~L~~lGyk 380 (531)
..+.+|+|+|..|. ||.. +++++...|++
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 46789999999887 7754 45566667763
No 88
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=39.93 E-value=69 Score=27.54 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhhhhcccCcceEEEee-----------ccCCCCCCccHHHHHhHhhhcccceeeeccchHHHHHHHHHHH
Q 009585 163 VDVLRNTIVALEESMTNGASFVVYYY-----------GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (531)
Q Consensus 163 ~d~l~~~~~~~~~~~~~~~~~~~~~y-----------G~~~~~lp~~i~~~l~~~e~~ag~v~~~~G~~~~q~~~aie~l 231 (531)
.+.|++.+..-.-.+.|.|+...|.- ||++.++.......... .+ ... ....++.+
T Consensus 3 ~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~----~~-------~~~--~~~~~~~~ 69 (118)
T cd01449 3 AEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDE----DG-------TFK--SPEELRAL 69 (118)
T ss_pred HHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCC----CC-------CcC--CHHHHHHH
Confidence 34444444322345778887665542 89998776655543321 11 111 12334445
Q ss_pred HHhcCcCCCCCeeehhhhhhHHHHHHHHHHHHHhcCCC
Q 009585 232 ERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS 269 (531)
Q Consensus 232 ~~~lG~~~~~pVv~~~~~vg~~aal~~~~~l~~~~gy~ 269 (531)
...+++.+++++|+|.-. |.-+.. .++.++..||.
T Consensus 70 ~~~~~~~~~~~iv~yc~~-g~~s~~--~~~~l~~~G~~ 104 (118)
T cd01449 70 FAALGITPDKPVIVYCGS-GVTACV--LLLALELLGYK 104 (118)
T ss_pred HHHcCCCCCCCEEEECCc-HHHHHH--HHHHHHHcCCC
Confidence 555788889999976532 322221 34555565653
No 89
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=37.99 E-value=1.1e+02 Score=32.68 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=33.1
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCCceEEecchHHHHHHcC
Q 009585 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (531)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~vLdGG~~AW~~aG 396 (531)
++++|+++ .-|.....++..|...|+.++.++++..-.+.+.+
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~ 176 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQ 176 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhc
Confidence 45566666 55667788999999999999999999876665543
No 90
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.95 E-value=47 Score=33.85 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.5
Q ss_pred ceEEEEeCCC---chHHHHHHHHHHccCCceEEe
Q 009585 355 SKVIVMDADG---TRSKGIARSLRKLGVMRAFLV 385 (531)
Q Consensus 355 ~~IVVyC~sG---~RS~~AA~~L~~lGyknV~vL 385 (531)
++|+++|..| .....+|+.|...|| +|.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 6899999655 478889999999999 67655
No 91
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=36.71 E-value=98 Score=29.49 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=31.2
Q ss_pred hcccCCCceEEEEeCCCc--hHHHHHHHHHH---ccCCceEEecchHHHH
Q 009585 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMRAFLVQGGFQSW 392 (531)
Q Consensus 348 Lk~l~kd~~IVVyC~sG~--RS~~AA~~L~~---lGyknV~vLdGG~~AW 392 (531)
++.++++..+|+.|..|. .|...|..|.. .|..++..+-||-.++
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 455678888999998887 78888888765 6888999999986443
No 92
>PRK10126 tyrosine phosphatase; Provisional
Probab=34.44 E-value=43 Score=30.99 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=28.1
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCceEEecchHHHH
Q 009585 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (531)
Q Consensus 355 ~~IVVyC~sG~-RS~~AA~~L~~lGyknV~vLdGG~~AW 392 (531)
.+|+++|.+.. ||..|-.+|+.++- ++.+...|..+|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999996554 99999999998763 466677777655
No 93
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=33.91 E-value=64 Score=31.73 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=25.4
Q ss_pred CCCceEEEEeCCC---chHHHHHHHHHHccCCceEEe
Q 009585 352 QDRSKVIVMDADG---TRSKGIARSLRKLGVMRAFLV 385 (531)
Q Consensus 352 ~kd~~IVVyC~sG---~RS~~AA~~L~~lGyknV~vL 385 (531)
++.++|+++|..| .....+|+.|...|+ +|+.+
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 4567899999654 478889999988787 57765
No 94
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=32.39 E-value=62 Score=35.05 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=24.2
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCCceE
Q 009585 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAF 383 (531)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~ 383 (531)
.+.++++.+.+|..|..+++++.+.|+ +|.
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G~-~v~ 204 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRGV-EIE 204 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCCC-EEE
Confidence 355788888889999999999888898 444
No 95
>PRK10565 putative carbohydrate kinase; Provisional
Probab=32.21 E-value=63 Score=36.31 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=25.5
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCceEEe
Q 009585 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (531)
Q Consensus 352 ~kd~~IVVyC~sG~---RS~~AA~~L~~lGyknV~vL 385 (531)
++.++|+++|..|+ ....+|+.|...|| +|.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~-~V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGI-DVTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCC-ceEEE
Confidence 44567999996554 77889999999999 56644
No 96
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=31.37 E-value=79 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=26.7
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHccCCceEEecchHH
Q 009585 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQ 390 (531)
Q Consensus 356 ~IVVyC~sG~-RS~~AA~~L~~lGyknV~vLdGG~~ 390 (531)
+|+++|.+.. ||..|-.+|+.++-.++.+...|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 6899996544 9999999999887556777766653
No 97
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=30.52 E-value=64 Score=27.68 Aligned_cols=49 Identities=6% Similarity=0.199 Sum_probs=28.0
Q ss_pred chhhcccchhhhhhhhhhhhhhhhhhhhHHHHHhHhhhhhhHHHhhhhh
Q 009585 70 SISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKST 118 (531)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (531)
.|..+..+++++...+.+.....+.+..+-+++.++.++..+.+....+
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~ 54 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA 54 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665555555555555555544444333
No 98
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=29.91 E-value=58 Score=30.22 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=27.8
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCceEEecchHHHH
Q 009585 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (531)
Q Consensus 355 ~~IVVyC~sG~-RS~~AA~~L~~lGyknV~vLdGG~~AW 392 (531)
++|+++|.+.. ||..|..+|+.++- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 47999996544 99999999987753 466777777665
No 99
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=29.67 E-value=80 Score=33.93 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=25.1
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCCceE
Q 009585 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAF 383 (531)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~L~~lGyknV~ 383 (531)
.+.++++...+|..|..++++|.+.|+ +|.
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~-~V~ 200 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGC-RVV 200 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCC-eEE
Confidence 456788888899999999999999998 554
No 100
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=29.16 E-value=77 Score=35.33 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=31.2
Q ss_pred ceEEEEeCCCc---hHHHHHHHHHHccCCceEEe-cch---------HHHHHHcCCce
Q 009585 355 SKVIVMDADGT---RSKGIARSLRKLGVMRAFLV-QGG---------FQSWVKEGLRI 399 (531)
Q Consensus 355 ~~IVVyC~sG~---RS~~AA~~L~~lGyknV~vL-dGG---------~~AW~~aGLPV 399 (531)
++|+|+|..|+ ....+|+.|...|| +|.++ -+. +..|...|.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGY-KPSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCC-ceEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 68999997655 77889999999999 56644 221 34566666555
No 101
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=29.06 E-value=2.4e+02 Score=28.57 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=21.3
Q ss_pred CceEEEEeCCCchHHH-HHHHHHHccCCc
Q 009585 354 RSKVIVMDADGTRSKG-IARSLRKLGVMR 381 (531)
Q Consensus 354 d~~IVVyC~sG~RS~~-AA~~L~~lGykn 381 (531)
.+..++||.+...+.. ++...+.+||.-
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ 175 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRP 175 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcce
Confidence 5789999988887765 555567889953
No 102
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=28.52 E-value=3e+02 Score=26.22 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=14.4
Q ss_pred CCCceEEEEeCCCc-hHHH
Q 009585 352 QDRSKVIVMDADGT-RSKG 369 (531)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~ 369 (531)
.++.+|+|.|..|. ||..
T Consensus 96 ~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred cCCCeEEEECCCCCCHHHH
Confidence 45789999998887 7754
No 103
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=27.86 E-value=59 Score=29.08 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCCcEEEEcCC
Q 009585 274 PKSTLELLRGKENAVLIDVRH 294 (531)
Q Consensus 274 p~El~elL~~~~~avLIDVRs 294 (531)
.+++.++++..+--+|||||.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 456677776555568999996
No 104
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=27.56 E-value=51 Score=29.90 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.2
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHccCC-ceEEecchHHHH
Q 009585 356 KVIVMDADGT-RSKGIARSLRKLGVM-RAFLVQGGFQSW 392 (531)
Q Consensus 356 ~IVVyC~sG~-RS~~AA~~L~~lGyk-nV~vLdGG~~AW 392 (531)
+|+++|.+.. ||..|..+|+++.-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 6899996554 999999888877544 677888887543
No 105
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=27.05 E-value=85 Score=34.18 Aligned_cols=27 Identities=30% Similarity=0.275 Sum_probs=22.6
Q ss_pred CceEEEEeCCCchHHHHHHHHHHccCC
Q 009585 354 RSKVIVMDADGTRSKGIARSLRKLGVM 380 (531)
Q Consensus 354 d~~IVVyC~sG~RS~~AA~~L~~lGyk 380 (531)
+.++++.-.+|..|..++|+|.+.|++
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~krG~~ 206 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKRGVE 206 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHcCCe
Confidence 346777777888999999999999995
No 106
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.47 E-value=1.1e+02 Score=28.59 Aligned_cols=86 Identities=19% Similarity=0.258 Sum_probs=46.6
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEcCChhhhhhcCCCcc------cccccccccccCcc--cccchhhhhhcCchhhhhHH
Q 009585 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLP--EVGGSVKKLLRGGRELDDTL 340 (531)
Q Consensus 269 ~g~ISp~El~elL~~~~~avLIDVRs~~Ey~~GHIPGA------igAv~i~~~NIPl~--el~~~l~~ll~~~~eL~~~L 340 (531)
.+.++++++.++-. ..=..||--|+-.|= -.=|+. .+..-+.|.+||.. .+.... -+.+.+.+
T Consensus 13 sgQi~~~D~~~iaa-~GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~d------V~~f~~Al 83 (130)
T COG3453 13 SGQISPADIASIAA-LGFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEAD------VEAFQRAL 83 (130)
T ss_pred cCCCCHHHHHHHHH-hccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCCCHHH------HHHHHHHH
Confidence 46889999888763 233468888874432 122322 11122344466652 121110 01122222
Q ss_pred HHHHHhhhcccCCCceEEEEeCCCchHHHHHHH
Q 009585 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (531)
Q Consensus 341 ~a~GI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~ 373 (531)
. .-+.||+.||++|.||..++..
T Consensus 84 ~----------eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 84 D----------EAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred H----------HhCCCEEeeecCCchHHHHHHH
Confidence 2 2467999999999999876644
No 107
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=24.74 E-value=90 Score=25.75 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=20.3
Q ss_pred eEEEEeCCCchHHHHH-HH----HHHccCCceEEecch
Q 009585 356 KVIVMDADGTRSKGIA-RS----LRKLGVMRAFLVQGG 388 (531)
Q Consensus 356 ~IVVyC~sG~RS~~AA-~~----L~~lGyknV~vLdGG 388 (531)
+|++.|.+|..+...+ .. +++.|+ .+....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi-~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGI-EVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTE-CEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccC-ceEEEEec
Confidence 5899999998554433 44 567787 34444443
No 108
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=24.58 E-value=1e+02 Score=35.24 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=31.1
Q ss_pred ceEEEEeCCCc---hHHHHHHHHHHccCCceEEec-----ch-----HHHHHHcCCce
Q 009585 355 SKVIVMDADGT---RSKGIARSLRKLGVMRAFLVQ-----GG-----FQSWVKEGLRI 399 (531)
Q Consensus 355 ~~IVVyC~sG~---RS~~AA~~L~~lGyknV~vLd-----GG-----~~AW~~aGLPV 399 (531)
++|+|+|..|+ ....+|+.|...|| +|.++- +. +..|+..|.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~-~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGY-KPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCC-ceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 68999997665 67789999999999 566542 22 23566666654
No 109
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=23.97 E-value=1e+02 Score=29.54 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=8.9
Q ss_pred HhhhhhhHHHhhhhhhHHHhhhh
Q 009585 104 LDTITSSLTSIKKSTSEAVDNVV 126 (531)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~ 126 (531)
+..+.+++++.+|..++-+|.++
T Consensus 43 l~~~~~~l~eeik~~n~~~~e~l 65 (155)
T PF07464_consen 43 LQNVSSSLQEEIKDANPEAEEAL 65 (155)
T ss_dssp HHHHHHHHHHHHTT-SSTHHHHH
T ss_pred HHHHHHHHHHHHHhcChhHHHHH
Confidence 33344444444444333333333
No 110
>PF05802 EspB: Enterobacterial EspB protein
Probab=23.58 E-value=2.6e+02 Score=29.57 Aligned_cols=116 Identities=13% Similarity=0.224 Sum_probs=66.9
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHhHhhhhhhHHHhhhhhhHHHhhhhhhheeccccccCccCCCcccccchhHHhhhhc
Q 009585 79 DDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDLKEASSKA 158 (531)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (531)
.+...++-|--.+.+.+.-+.+.+.++++++...++++..+++.+++=+-....-+ -+.+.|.|-.++-+|-+|+
T Consensus 138 Sks~~AIaeLq~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~-----~a~~as~~ae~~A~Aa~k~ 212 (317)
T PF05802_consen 138 SKSEKAIAELQQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVAT-----SAQKASQLAEQAADAAQKA 212 (317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666677777777777777777777776654221111111 1234566666677777766
Q ss_pred cchhHHHHHHHHHhhhhhcccCcceEEE-eeccCCCCCCccHHHHHhH
Q 009585 159 TVAAVDVLRNTIVALEESMTNGASFVVY-YYGTTKESLPPEIRDALNL 205 (531)
Q Consensus 159 ~~~~~d~l~~~~~~~~~~~~~~~~~~~~-~yG~~~~~lp~~i~~~l~~ 205 (531)
+- +-+-.-++ +-|.++.+|++. +.---..-||.+|.+.+.+
T Consensus 213 ~~-----~~~~~~~~-~~~~~~t~f~~vtslaeg~ktlptt~sesvks 254 (317)
T PF05802_consen 213 SR-----LSRFLAAV-DKITGSTAFIAVTSLAEGTKTLPTTISESVKS 254 (317)
T ss_pred hH-----HHHHHHHH-hhhcCCCceEeeehhhcccccCCchHHHhhcc
Confidence 54 22222333 456666777654 4455557889988876655
No 111
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=23.09 E-value=93 Score=34.83 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=31.6
Q ss_pred CCCceEEEEeCC---CchHHHHHHHHHHccCCceEEecc
Q 009585 352 QDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQG 387 (531)
Q Consensus 352 ~kd~~IVVyC~s---G~RS~~AA~~L~~lGyknV~vLdG 387 (531)
=++++||+++++ |.+|.+..++|+++|-++|++-.+
T Consensus 346 v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 346 VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred hCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 368999999985 889999999999999999987654
No 112
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=22.95 E-value=1.4e+02 Score=28.47 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=32.6
Q ss_pred ccCCCceEEEEeCCCc--hHHHHHHHHHHc---cCCceEEecchHHHH
Q 009585 350 IVQDRSKVIVMDADGT--RSKGIARSLRKL---GVMRAFLVQGGFQSW 392 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~--RS~~AA~~L~~l---GyknV~vLdGG~~AW 392 (531)
.++++..+|+.|..|. .|...|..|..+ |..++..+-||-.++
T Consensus 63 ~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 63 ALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred hCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 3466777888898886 888888888654 556899999987655
No 113
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.94 E-value=91 Score=32.99 Aligned_cols=100 Identities=21% Similarity=0.272 Sum_probs=73.8
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHhHhhhhhhHHHhhhh---------hhHHHhhhhhhheeccccccCccCCCccccc
Q 009585 78 FDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKS---------TSEAVDNVVSRVFSSIDQTGGSAGSKLTNFS 148 (531)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 148 (531)
...+...|+|-...+++=--.+|++-+|.++.-|+..+|| -.+|++.|+..+|.+.|.
T Consensus 150 irm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~lF~~Ld~------------- 216 (324)
T COG0435 150 IRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVKKLFEALDK------------- 216 (324)
T ss_pred HHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcccccCceeeecccchHHHHHHHHHHHHHHHHH-------------
Confidence 3455566666666677777788999999999999999886 468999999999999997
Q ss_pred chhHHhhhhccchhHHHHHHHHHhhhhhcccCcceEEEeeccCCCCC
Q 009585 149 TDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESL 195 (531)
Q Consensus 149 ~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG~~~~~l 195 (531)
|....+.--=.+.|.|-+|=+.+=.+|. -|-..++||.|-.+
T Consensus 217 --lE~~L~~~ryl~Gd~lTEAD~RLftTlv---RFD~VYvgHFKCN~ 258 (324)
T COG0435 217 --LEQILSERRYLTGDQLTEADIRLFTTLV---RFDPVYVGHFKCNL 258 (324)
T ss_pred --HHHHhhcCeeeccccchHhhhhhhheeE---eecceEEeeeeccc
Confidence 4445555555666666666666666665 47777888887433
No 114
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=22.66 E-value=88 Score=29.98 Aligned_cols=29 Identities=28% Similarity=0.206 Sum_probs=20.4
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccCC
Q 009585 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (531)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~--AA~~L~~lGyk 380 (531)
.+..+|+|.|..|. ||.. +||.|...|..
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 35669999999887 7753 55677765553
No 115
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=21.53 E-value=2e+02 Score=28.15 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=21.1
Q ss_pred cCCCceEEEEeCC----C-------c-------hHHHHHHHHHHccCCceEEecc
Q 009585 351 VQDRSKVIVMDAD----G-------T-------RSKGIARSLRKLGVMRAFLVQG 387 (531)
Q Consensus 351 l~kd~~IVVyC~s----G-------~-------RS~~AA~~L~~lGyknV~vLdG 387 (531)
-.+++|||++-.- + . .-..+...|++.|.+|+++++|
T Consensus 90 ~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 90 AHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp T-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred hCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 3688999887521 1 0 1133555677889999999987
No 116
>PRK13530 arsenate reductase; Provisional
Probab=21.39 E-value=1.6e+02 Score=27.00 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=25.6
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCceEEecchH
Q 009585 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (531)
Q Consensus 355 ~~IVVyC~sG~-RS~~AA~~L~~lGyknV~vLdGG~ 389 (531)
++|+++|.+.. ||..|-.+++.++-.++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 47999996554 998888888776544666676665
No 117
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.33 E-value=1.2e+02 Score=26.36 Aligned_cols=37 Identities=14% Similarity=0.394 Sum_probs=23.7
Q ss_pred CceEEEEeCCCchHHHHHHHH----HHccCCceEEecchHHH
Q 009585 354 RSKVIVMDADGTRSKGIARSL----RKLGVMRAFLVQGGFQS 391 (531)
Q Consensus 354 d~~IVVyC~sG~RS~~AA~~L----~~lGyknV~vLdGG~~A 391 (531)
.++|++.|.+|..|..++..+ ++.|+ ++.+-..++..
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi-~~~v~a~~~~~ 43 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGV-PVKIAAGSYGA 43 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCC-cEEEEEecHHH
Confidence 468999999999776666554 45566 34444444443
Done!