Query 009586
Match_columns 531
No_of_seqs 192 out of 819
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 08:30:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 81.2 9.8 0.00033 39.5 11.5 34 30-63 202-237 (511)
2 3gia_A Uncharacterized protein 80.7 2.7 9.3E-05 42.9 7.0 61 127-195 297-358 (444)
3 3l1l_A Arginine/agmatine antip 69.2 13 0.00046 37.6 8.6 15 35-49 197-211 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 29.4 23 0.00077 31.1 1.9 22 501-524 30-51 (124)
5 3luu_A Uncharacterized protein 24.3 25 0.00085 29.5 1.2 18 501-518 35-52 (101)
6 2l6n_A Uncharacterized protein 23.4 33 0.0011 30.5 1.9 15 501-515 37-51 (132)
7 2bm3_A Type 2 cohesin, scaffol 21.0 27 0.00093 32.3 0.8 11 7-17 45-55 (166)
8 1nrp_R Receptor based peptide 18.0 39 0.0013 21.6 0.8 17 80-96 4-20 (26)
9 2rdd_B UPF0092 membrane protei 16.3 2.3E+02 0.0079 19.5 4.6 18 239-256 1-18 (37)
10 3ghp_A Cellulosomal scaffoldin 15.2 44 0.0015 32.3 0.8 13 5-17 46-58 (227)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=81.15 E-value=9.8 Score=39.50 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=21.0
Q ss_pred cceeeecceeeeecchhhhhhccCCCC--ccceeeh
Q 009586 30 DGWTSLGGIMLSITGTEALFADLAHFP--VSAIQIA 63 (531)
Q Consensus 30 ~g~~~LG~v~L~iTG~EAlyADlGHF~--~~~I~~a 63 (531)
.+|..+..++.+.+|-|+.-.=-+-.- +|.+..|
T Consensus 202 ~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~a 237 (511)
T 4djk_A 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237 (511)
T ss_dssp TTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHH
Confidence 456667778899999998654333332 3444444
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=80.73 E-value=2.7 Score=42.91 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=28.3
Q ss_pred hhHHHHHHcCCCCceeEEecCCccCCccccchhhHHHH-HHhheeEEEecCcchhhhhhhhhhHHHHHHH
Q 009586 127 SIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWILM-ILCIAVTAGFKNQSQIGNAYGTAVVIVMLAT 195 (531)
Q Consensus 127 Si~~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lm-i~~i~v~~~F~~s~~l~~AYGiaV~~~m~iT 195 (531)
-+....-+-|.+|+. -++..++. |...-++. +.++++. .+-+-+.+.+.++++...+..++
T Consensus 297 R~l~a~a~dg~lP~~----f~~~~~~~---P~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 358 (444)
T 3gia_A 297 NVAYSLAKDGELPEF----FERKVWFK---STEGLYITSALGVLFA-LLFNMEGVASITSAVFMVIYLFV 358 (444)
T ss_dssp HHHHHHHHHSSCCSS----CCTTSCCS---CTHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHH----HhCCCCCC---CcHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHH
Confidence 344445577999964 12222222 55332222 2222222 22355667776666655554443
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=69.17 E-value=13 Score=37.61 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=9.9
Q ss_pred ecceeeeecchhhhh
Q 009586 35 LGGIMLSITGTEALF 49 (531)
Q Consensus 35 LG~v~L~iTG~EAly 49 (531)
+..++.+.+|-|+.-
T Consensus 197 ~~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 197 LNVTLWSFIGVESAS 211 (445)
T ss_dssp HHHHHHTTTTTTHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 344567778988753
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=29.39 E-value=23 Score=31.15 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=15.5
Q ss_pred HHHHHhhccCCCcccccCCCCeee
Q 009586 501 YAFLRKICRENSVIFNVPHESLLN 524 (531)
Q Consensus 501 Y~FLRkNcR~~~~~L~IPh~~LlE 524 (531)
|.|||.||+++...-. .++++.
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5899999999865543 555543
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=24.35 E-value=25 Score=29.45 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=10.0
Q ss_pred HHHHHhhccCCCcccccC
Q 009586 501 YAFLRKICRENSVIFNVP 518 (531)
Q Consensus 501 Y~FLRkNcR~~~~~L~IP 518 (531)
|.|||.||+.+...-.-+
T Consensus 35 ~~wLRd~c~ca~c~~~~t 52 (101)
T 3luu_A 35 FEHLRVECPCAECKGHTP 52 (101)
T ss_dssp HHHHHHTCCCC-------
T ss_pred HHHHHhhCCChhhcCccC
Confidence 789999999776544333
No 6
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=23.45 E-value=33 Score=30.52 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=12.1
Q ss_pred HHHHHhhccCCCccc
Q 009586 501 YAFLRKICRENSVIF 515 (531)
Q Consensus 501 Y~FLRkNcR~~~~~L 515 (531)
|.|||.||+.+...-
T Consensus 37 ~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 37 CELLRVYSPSAEVHG 51 (132)
T ss_dssp HHHHHHSCSCSSSSS
T ss_pred HHHHHhcCCCcccCC
Confidence 689999999876553
No 7
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=20.96 E-value=27 Score=32.34 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=4.2
Q ss_pred cCcceeeecCh
Q 009586 7 YDSSVLKAFSP 17 (531)
Q Consensus 7 ~~p~Vl~A~nP 17 (531)
|||+||+|.||
T Consensus 45 YDP~VLqaVn~ 55 (166)
T 2bm3_A 45 YDPKVLMAVDP 55 (166)
T ss_dssp CCTTTEEEECT
T ss_pred ECccceEeecC
Confidence 33333333333
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=17.98 E-value=39 Score=21.64 Aligned_cols=17 Identities=12% Similarity=0.550 Sum_probs=14.5
Q ss_pred hhhhccccccccccccc
Q 009586 80 AAYLMNHQDHVVDAFYR 96 (531)
Q Consensus 80 ~A~l~~~p~~~~npFf~ 96 (531)
-+||++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=16.30 E-value=2.3e+02 Score=19.47 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=9.4
Q ss_pred CChHHHHHHHHHHHHHHH
Q 009586 239 GGWVPLVIAAAFLVIMYV 256 (531)
Q Consensus 239 GGW~pl~ia~~~~~im~~ 256 (531)
|||..++.-++++.+|+.
T Consensus 1 ~~~~~~l~~v~~~~ifYF 18 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYF 18 (37)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 455555544455555543
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=15.17 E-value=44 Score=32.29 Aligned_cols=13 Identities=54% Similarity=0.915 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 009586 5 WKYDSSVLKAFSP 17 (531)
Q Consensus 5 ~~~~p~Vl~A~nP 17 (531)
+||||.||+|+||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
Done!