Query 009586
Match_columns 531
No_of_seqs 192 out of 819
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 08:31:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009586.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009586hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 25.4 23 0.0017 21.4 2.4 20 240-259 5-24 (27)
2 d2yvxa3 f.57.1.1 (A:276-448) M 21.8 18 0.0013 31.4 2.1 119 70-201 12-132 (173)
3 d1or7a2 a.177.1.1 (A:-1-111) S 14.8 43 0.0032 25.6 2.7 24 489-512 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 14.3 23 0.0017 25.4 0.7 39 71-111 16-54 (57)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 10.5 62 0.0045 24.7 2.3 26 338-363 57-82 (103)
6 d2a65a1 f.54.1.1 (A:5-513) Na( 10.0 2.5E+02 0.018 26.9 7.3 49 218-267 380-431 (509)
7 d1f97a1 b.1.1.1 (A:27-128) Jun 9.2 62 0.0045 23.7 1.7 25 341-365 67-91 (102)
8 d1f2qa2 b.1.1.4 (A:86-174) IgE 9.1 72 0.0053 23.2 2.1 40 330-369 40-79 (89)
9 d2c9aa1 b.1.1.4 (A:184-279) Re 8.3 79 0.0057 22.9 2.0 20 340-359 61-80 (96)
10 d1dx5i1 g.3.11.1 (I:345-387) T 8.0 38 0.0028 22.9 -0.0 26 341-369 14-39 (43)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.42 E-value=23 Score=21.43 Aligned_cols=20 Identities=35% Similarity=0.886 Sum_probs=16.0
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 009586 240 GWVPLVIAAAFLVIMYVWHY 259 (531)
Q Consensus 240 GW~pl~ia~~~~~im~~W~~ 259 (531)
||+.|+.-..-..-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777888888854
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=21.81 E-value=18 Score=31.41 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=68.0
Q ss_pred hHHHhhcccc--hhhhccccccccccccccccCcchhHHHHHHHHHHHHhhhheeeehhhhHHHHHHcCCCCceeEEecC
Q 009586 70 PCLLLAYSGQ--AAYLMNHQDHVVDAFYRSIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTS 147 (531)
Q Consensus 70 P~L~l~Y~GQ--~A~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~ki~hTS 147 (531)
|-|+++.+|+ +|+++.+-|+.-+.+-. =..|.|+ ++-++.-++||+. +++-+++++|-.-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh---HH
Confidence 3444455544 56777655543332211 2356776 6778888999986 4888999999543211 11
Q ss_pred CccCCccccchhhHHHHHHhheeEEEecCcchhhhhhhhhhHHHHHHHHHHHHH
Q 009586 148 KKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVIVMLATTLLMTL 201 (531)
Q Consensus 148 ~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~m~iTT~L~~~ 201 (531)
+...-++.+-.+|=+.+...+.....+.+...++-+=|++...+|++.+++=++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223345667777766655554444445555556666566666666555554443
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=14.75 E-value=43 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.9
Q ss_pred CchHHHHHHHHHHHHHHhhccCCC
Q 009586 489 SKFYKKIAIDYIYAFLRKICRENS 512 (531)
Q Consensus 489 Ss~lKK~vIn~~Y~FLRkNcR~~~ 512 (531)
.+|+.+++.|.+..++|++.|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998654
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=14.29 E-value=23 Score=25.40 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=26.0
Q ss_pred HHHhhcccchhhhccccccccccccccccCcchhHHHHHHH
Q 009586 71 CLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVFIVAT 111 (531)
Q Consensus 71 ~L~l~Y~GQ~A~l~~~p~~~~npFf~~~P~~~~~P~~vlAt 111 (531)
++++--++=+.|+..+.. .+.-|.++|+.+.|-++-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 444445566667777654 334599999999997665543
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.55 E-value=62 Score=24.72 Aligned_cols=26 Identities=27% Similarity=0.582 Sum_probs=21.1
Q ss_pred CceEEEEEecCCCCCEEEEEEEEeec
Q 009586 338 EERFLVKRIGPKNFHMFRCVARYGYK 363 (531)
Q Consensus 338 ~eR~~v~~~~~~~~~~yR~vvryGY~ 363 (531)
+..+.+..+...|.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 35677888888888999999988764
No 6
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=9.97 E-value=2.5e+02 Score=26.93 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhhhccc---CCChHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009586 218 TALSLVVECTYFSAVLFKVD---QGGWVPLVIAAAFLVIMYVWHYGTVKRYEF 267 (531)
Q Consensus 218 ~~~f~~ie~~f~sa~l~Kv~---~GGW~pl~ia~~~~~im~~W~~G~~~~~~~ 267 (531)
.++++..=+.+++....... -++ +.+.+.+.+.++...|.||.++..+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 380 AIVFFSAHLVMFLNKSLDEMDFWAGT-IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHBTTHHHHHHHHTTT-HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred EEEEhhhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 33444444444444433322 244 45666678889999999999877654
No 7
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.16 E-value=62 Score=23.72 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=19.2
Q ss_pred EEEEEecCCCCCEEEEEEEEeeccC
Q 009586 341 FLVKRIGPKNFHMFRCVARYGYKDL 365 (531)
Q Consensus 341 ~~v~~~~~~~~~~yR~vvryGY~d~ 365 (531)
..+.++...|.|.|+|.++..+...
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSSS
T ss_pred EEEeECCccCCEEEEEEEEECCCCE
Confidence 4577777778899999998766543
No 8
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.11 E-value=72 Score=23.24 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=0.0
Q ss_pred eeecccCCCceEEEEEecCCCCCEEEEEEEEeeccCCCCh
Q 009586 330 LPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKD 369 (531)
Q Consensus 330 ~~vP~V~~~eR~~v~~~~~~~~~~yR~vvryGY~d~~~~~ 369 (531)
..++.-.....+.+..+...+-|.|+|.++.|+.+....+
T Consensus 40 ~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~ 79 (89)
T d1f2qa2 40 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEP 79 (89)
T ss_dssp EECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred eccccccccceEEEeeeeeecCcEEEEEEEeCCCCeEeee
No 9
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.30 E-value=79 Score=22.89 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=0.0
Q ss_pred eEEEEEecCCCCCEEEEEEE
Q 009586 340 RFLVKRIGPKNFHMFRCVAR 359 (531)
Q Consensus 340 R~~v~~~~~~~~~~yR~vvr 359 (531)
.+.+..+.+.|.|.|+|++.
T Consensus 61 ~L~I~~v~~~D~G~Y~C~a~ 80 (96)
T d2c9aa1 61 SFNVVNTTKRDAGKYRCMIR 80 (96)
T ss_dssp EEEECSCCGGGCSEEEEEEE
T ss_pred EEEECCCCHHHCeEEEEEEE
No 10
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.97 E-value=38 Score=22.90 Aligned_cols=26 Identities=12% Similarity=0.431 Sum_probs=0.0
Q ss_pred EEEEEecCCCCCEEEEEEEEeeccCCCCh
Q 009586 341 FLVKRIGPKNFHMFRCVARYGYKDLHKKD 369 (531)
Q Consensus 341 ~~v~~~~~~~~~~yR~vvryGY~d~~~~~ 369 (531)
+.-..+++ +=|||+.+-||+-.++.|
T Consensus 14 ~qCqP~~~---~~Y~CiCaeGFaP~p~~P 39 (43)
T d1dx5i1 14 YQCQPLDQ---TSYLCVCAEGFAPIPHEP 39 (43)
T ss_dssp SEEEECSS---SCEEEECCTTEEEETTEE
T ss_pred eeeeeCCC---CcceEEeccccccCCCCc
Done!