Query 009587
Match_columns 531
No_of_seqs 194 out of 1848
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 3E-71 1E-75 589.9 31.8 395 22-493 2-413 (429)
2 3qe7_A Uracil permease; uracil 60.3 26 0.0009 36.5 8.9 77 323-400 44-131 (429)
3 1pw4_A Glycerol-3-phosphate tr 25.5 4.2E+02 0.014 25.8 11.1 38 53-90 273-310 (451)
4 3o7q_A L-fucose-proton symport 14.6 8E+02 0.027 23.6 10.7 100 55-169 49-152 (438)
5 3hd6_A Ammonium transporter RH 13.1 1.2E+02 0.0041 32.1 3.5 38 469-506 408-445 (490)
6 4aps_A DI-OR tripeptide H+ sym 12.9 4.4E+02 0.015 26.2 7.9 36 55-90 36-76 (491)
7 2gfp_A EMRD, multidrug resista 9.9 1E+03 0.036 22.2 9.4 43 55-98 23-69 (375)
8 3o7q_A L-fucose-proton symport 8.6 3.9E+02 0.013 26.0 5.5 37 54-90 280-317 (438)
9 1pw4_A Glycerol-3-phosphate tr 7.5 4.9E+02 0.017 25.3 5.7 54 35-90 28-84 (451)
10 2ot8_C HnRNP M, heterogeneous 6.4 2.5E+02 0.0084 17.7 1.6 23 492-523 7-29 (30)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=3e-71 Score=589.92 Aligned_cols=395 Identities=22% Similarity=0.365 Sum_probs=350.4
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCCcceeEc
Q 009587 22 PSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-GTRLPAVMG 100 (531)
Q Consensus 22 ~~~~~~~~~~pp~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~-G~rlPiv~G 100 (531)
.|+.|++|||||+++++++|+||+++|+++++++|+++ |+|+ +++++++|++|++|+++ |+|+|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G 70 (429)
T 3qe7_A 2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLG 70 (429)
T ss_dssp --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEec
Confidence 36789999999999999999999999999999999996 8887 48999999999999987 899999999
Q ss_pred cccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhh--hhH-HHHHhhcCcccHHHHHHHHHH
Q 009587 101 GSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--GLW-RNVTRFLSPLSVVPLISLVGF 177 (531)
Q Consensus 101 psfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~--g~~-~~l~~~~Pp~V~G~~i~lIGl 177 (531)
+||+|++++..+.+ + +|++++|+++++|+++++++++ |++ +|++|+|||+|+|.++++||+
T Consensus 71 ~sfafi~~~~~i~~-~---------------g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl 134 (429)
T 3qe7_A 71 SSFAFISPVLLLLP-L---------------GYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGL 134 (429)
T ss_dssp ECGGGHHHHHHHGG-G---------------CHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh-c---------------CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHH
Confidence 99999998877653 2 6899999999999999999987 554 799999999999999999999
Q ss_pred HhhhhhccCcc-----------hhhhhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCC
Q 009587 178 GLYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYND 246 (531)
Q Consensus 178 ~l~~~~~~~~~-----------~~~~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~ 246 (531)
++++.++++.+ .++.+++.+++++++++++.| +++|++++|+|+++||++++.+|..
T Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~~----- 202 (429)
T 3qe7_A 135 ELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGIV----- 202 (429)
T ss_dssp HHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcCC-----
Confidence 99998776532 246688888888777766554 4688999999999999999999852
Q ss_pred CCccCccccccCcCCccCCCCcccCCcccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcch
Q 009587 247 AAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGV 326 (531)
Q Consensus 247 ~~~~~~~~~~~d~~~~v~~ap~~~~P~~~~~g~P~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l 326 (531)
|+++ +.++||+++|. |+.|+||++.+..++++++++++|++|++.++++.++++..++++.||++
T Consensus 203 -----------d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l 267 (429)
T 3qe7_A 203 -----------DTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSM 267 (429)
T ss_dssp -----------TSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHH
T ss_pred -----------Cccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHH
Confidence 4443 56789999995 56789999999999999999999999999999999987655678999999
Q ss_pred hhhhhHHHhhhhcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 009587 327 GWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVG 406 (531)
Q Consensus 327 ~adGl~~ilaglfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~ 406 (531)
.+||++|+++|+||++|.|+|+ ||+|+++.||++||++.+.+|+++++++++||++++++.||.||+||+++++||++.
T Consensus 268 ~adGla~i~~glfGg~p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~ 346 (429)
T 3qe7_A 268 FANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIG 346 (429)
T ss_dssp HHHHHHHHHHHHHTCCCEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhh--hhccccCcccEEeehhhHHhhhchhhhhhhhhhhcCCCCccccccccccchhcccccchHHHHHHHHHHhh
Q 009587 407 AGGLSFL--QFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDN 484 (531)
Q Consensus 407 ~~Gi~~l--~~~~~~d~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~ailLn~ 484 (531)
.+|+|++ +++|++++||.+|+++++.+|++... +| ++.+..||+++|+++|++||+
T Consensus 347 ~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln~ 404 (429)
T 3qe7_A 347 ASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLSL 404 (429)
T ss_dssp HHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHHH
Confidence 9999999 89999988999999999999997421 22 356788999999999999999
Q ss_pred hcCCCCccc
Q 009587 485 TLHKKDGQV 493 (531)
Q Consensus 485 ~~~~~~~~~ 493 (531)
++|++++++
T Consensus 405 ~l~~~~~~~ 413 (429)
T 3qe7_A 405 IFKLISVLR 413 (429)
T ss_dssp HHTCCC---
T ss_pred HhcCccccC
Confidence 999864443
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=60.29 E-value=26 Score=36.50 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=47.7
Q ss_pred CcchhhhhhHHHhhhhcCCCCCcccccchhhh----hhhccCCch----hHHHHHHHHHHHHHHh-hHH--HHHHHhCCH
Q 009587 323 SRGVGWQGVGILLSGLFGTVNGTSVSVENAGL----LALTRVGSR----RVVQISAGFMIFFSVL-GKF--GAVFASIPA 391 (531)
Q Consensus 323 ~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~----i~~Tgv~SR----~~~~~ag~~li~lg~~-pk~--~~li~~IP~ 391 (531)
+.++++.|++|++=++++..+.-.+.+.|-.. ....+ .+- -..+.+|++.++++++ .++ ..+...+|.
T Consensus 44 ~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~Pp 122 (429)
T 3qe7_A 44 ATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPP 122 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCC
Confidence 36899999999998887544432222233332 11222 221 1346678888888876 233 368999999
Q ss_pred HHHHHHHHH
Q 009587 392 PIVAALYCL 400 (531)
Q Consensus 392 ~Vlgg~li~ 400 (531)
.|+|.+...
T Consensus 123 vviG~~i~~ 131 (429)
T 3qe7_A 123 AAMGAIVAV 131 (429)
T ss_dssp HHHHHHHHH
T ss_pred eeeHHHHHH
Confidence 888886554
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=25.48 E-value=4.2e+02 Score=25.84 Aligned_cols=38 Identities=16% Similarity=-0.050 Sum_probs=25.2
Q ss_pred ehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009587 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (531)
Q Consensus 53 i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~ 90 (531)
...|..+.+..|.++.+...+.....+...++.++-.+
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577776668999887776666655666666666554
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=14.59 E-value=8e+02 Score=23.60 Aligned_cols=100 Identities=10% Similarity=-0.067 Sum_probs=56.0
Q ss_pred hHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceeEccccchHHHHHHHHHhcCCCCCCCCCchhhh
Q 009587 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFK 130 (531)
Q Consensus 55 vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~----~G~rlPiv~Gpsfa~i~~~~~i~~~~g~~~~~~~~~~~~~ 130 (531)
.|.+ .+..|+++.+...+.+...+...++.++-+. +|.|..++.+.....+.......... .
T Consensus 49 ~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------------~ 114 (438)
T 3o7q_A 49 LPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------------I 114 (438)
T ss_dssp HHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-------------T
T ss_pred HHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-------------c
Confidence 4543 4458999998888888888888888888765 56555554444322222211100010 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHH
Q 009587 131 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVV 169 (531)
Q Consensus 131 ~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G 169 (531)
..+...+.+.++.|+..-..-.. ....+.+.+|+.--+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~~r~ 152 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESSGH 152 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCSTTHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCchhHH
Confidence 23455666666666655443322 235667788875433
No 5
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=13.08 E-value=1.2e+02 Score=32.10 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=28.4
Q ss_pred ccchHHHHHHHHHHhhhcCCCCccchhhcccccccccc
Q 009587 469 SSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFW 506 (531)
Q Consensus 469 ~~gi~~g~l~ailLn~~~~~~~~~~~~~~~~~~~~~~~ 506 (531)
.-.+..+.++..+||.....+.++++|.+|++-||=+.
T Consensus 408 ~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~ 445 (490)
T 3hd6_A 408 AMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPE 445 (490)
T ss_dssp HHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCT
T ss_pred HHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCc
Confidence 34667788888899998876656667888988886533
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=12.85 E-value=4.4e+02 Score=26.23 Aligned_cols=36 Identities=6% Similarity=-0.046 Sum_probs=28.5
Q ss_pred hHHHhhhh-----cCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009587 55 IPTSLVPQ-----MGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (531)
Q Consensus 55 vP~il~~a-----~gl~~~~~~~li~atll~sGi~Tllq~~ 90 (531)
.|..+.+. .|+|..+...+.+...+...++.++-+.
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~ 76 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGF 76 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 8999999988888888888888888765
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=9.88 E-value=1e+03 Score=22.22 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=30.1
Q ss_pred hHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCccee
Q 009587 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAV 98 (531)
Q Consensus 55 vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~----~G~rlPiv 98 (531)
.|.+ .+..|.|+++...+.+...+...++.++-+. +|.|..+.
T Consensus 23 ~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 69 (375)
T 2gfp_A 23 IADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL 69 (375)
T ss_dssp HHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH
T ss_pred hHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 3443 3458999988888888887878888777765 46555544
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=8.58 E-value=3.9e+02 Score=25.96 Aligned_cols=37 Identities=5% Similarity=-0.077 Sum_probs=23.6
Q ss_pred hhHHH-hhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009587 54 LIPTS-LVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (531)
Q Consensus 54 ~vP~i-l~~a~gl~~~~~~~li~atll~sGi~Tllq~~ 90 (531)
..|.. +.+..|.++.+...+.....++..++.++-.+
T Consensus 280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666 66667999887776665555555566655544
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=7.52 E-value=4.9e+02 Score=25.31 Aligned_cols=54 Identities=7% Similarity=0.003 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhce---eehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009587 35 PEAILLGFQHYIVMLGT---TVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (531)
Q Consensus 35 ~~~i~~GlQh~lam~~~---~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~ 90 (531)
+..+...+.+++..+.. ....|.+..+ . .++.+...+.+...+...++.++-+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~ 84 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGS 84 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444445554443322 2233544433 5 78888887777777777787777765
No 10
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=6.40 E-value=2.5e+02 Score=17.75 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=13.3
Q ss_pred cchhhcccccccccccCCCCCCCCcccCCCcc
Q 009587 492 QVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFN 523 (531)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~ 523 (531)
+.|+||..+. ++-+++. |+=|.+
T Consensus 7 e~rkEk~~Kr--------ggnrfep-Y~Np~k 29 (30)
T 2ot8_C 7 EKRKEKNIKR--------GGNRFEP-YANPTK 29 (30)
T ss_pred chhhcccccc--------CCccccc-ccCccC
Confidence 4467776543 4455665 776653
Done!