Query 009587
Match_columns 531
No_of_seqs 194 out of 1848
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 08:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009587.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009587hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 23.7 1.6E+02 0.012 26.2 9.9 13 387-399 114-126 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 8.6 5.7E+02 0.041 22.0 10.7 37 55-91 272-308 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 6.7 1.9E+02 0.014 24.8 4.4 43 56-98 31-77 (417)
4 d2fug71 d.82.2.2 (7:3-129) NAD 4.7 1.1E+02 0.0078 23.8 0.9 13 513-525 41-53 (127)
5 d2axta1 f.26.1.1 (A:10-344) Ph 4.0 2.5E+02 0.018 25.5 3.1 41 464-504 193-233 (335)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 2.4 6E+02 0.044 14.2 2.5 14 223-236 13-26 (32)
7 d1xrda1 f.3.1.1 (A:1-52) Light 1.9 7.2E+02 0.052 16.1 2.6 17 363-379 11-27 (52)
8 d2j7ja2 g.37.1.1 (A:29-57) Tra 1.8 1.4E+02 0.01 17.0 -1.0 12 515-526 12-23 (29)
9 d1zaka2 g.41.2.1 (A:128-158) M 1.6 4.6E+02 0.034 15.3 1.1 16 19-34 5-20 (31)
10 d1ymga1 f.19.1.1 (A:6-239) Aqu 1.6 6.2E+02 0.045 21.0 2.6 23 474-497 205-228 (234)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=23.67 E-value=1.6e+02 Score=26.24 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=6.2
Q ss_pred HhCCHHHHHHHHH
Q 009587 387 ASIPAPIVAALYC 399 (531)
Q Consensus 387 ~~IP~~Vlgg~li 399 (531)
.....-.+...+.
T Consensus 114 ~~~~~~~~~~~~~ 126 (447)
T d1pw4a_ 114 SSIAVMFVLLFLC 126 (447)
T ss_dssp SSSSHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3455555554443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.62 E-value=5.7e+02 Score=22.04 Aligned_cols=37 Identities=16% Similarity=-0.005 Sum_probs=27.2
Q ss_pred hHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 009587 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (531)
Q Consensus 55 vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~ 91 (531)
.|..+.+..+.+.++.........+...+++++..++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 4666666688998888777777777777777777653
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.66 E-value=1.9e+02 Score=24.79 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=32.7
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCccee
Q 009587 56 PTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAV 98 (531)
Q Consensus 56 P~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~----~G~rlPiv 98 (531)
|.-+.+..|+|+.|...+.+...+...++..+-+. +|.|..++
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~ 77 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 54466668999999888888888888888888775 57666553
No 4
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=4.73 E-value=1.1e+02 Score=23.77 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=10.8
Q ss_pred CCCcccCCCcccc
Q 009587 513 RSEEFYSLPFNLN 525 (531)
Q Consensus 513 ~~~~~y~~p~~~~ 525 (531)
++++.|+||+-++
T Consensus 41 RMERpYdLPTTvM 53 (127)
T d2fug71 41 RMERPYDLPTTIM 53 (127)
T ss_dssp CCSSCCCCSCSEE
T ss_pred hccccccCChhhe
Confidence 4889999998765
No 5
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.98 E-value=2.5e+02 Score=25.53 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=29.0
Q ss_pred hhcccccchHHHHHHHHHHhhhcCCCCccchhhcccccccc
Q 009587 464 VNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDK 504 (531)
Q Consensus 464 ~~~~l~~gi~~g~l~ailLn~~~~~~~~~~~~~~~~~~~~~ 504 (531)
+.-++++.+..+.=-+.+++.+.|++.+.+..++|.+..||
T Consensus 193 Ia~~fG~aLl~AMHGatVls~l~~e~~e~~s~~~~~~f~q~ 233 (335)
T d2axta1 193 VAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQE 233 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBBCCSCSSSCSGGGCCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcCCCcCCcccCCCCCCc
Confidence 34566778888888889999999876544455666665555
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.37 E-value=6e+02 Score=14.24 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 009587 223 AVIFSVVIVWIYAH 236 (531)
Q Consensus 223 aiLigivvG~i~a~ 236 (531)
+...|+.+|.+.++
T Consensus 13 alffgiavgiifai 26 (32)
T d2e74e1 13 ALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhheeeE
Confidence 45557777766553
No 7
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=1.91 E-value=7.2e+02 Score=16.07 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHh
Q 009587 363 RRVVQISAGFMIFFSVL 379 (531)
Q Consensus 363 R~~~~~ag~~li~lg~~ 379 (531)
|++.+.-++++.++++.
T Consensus 11 Rr~lva~~~fL~~LAl~ 27 (52)
T d1xrda1 11 RQALVGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666665543
No 8
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=1.81 E-value=1.4e+02 Score=17.03 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=7.9
Q ss_pred CcccCCCccccc
Q 009587 515 EEFYSLPFNLNK 526 (531)
Q Consensus 515 ~~~y~~p~~~~~ 526 (531)
++.|+.|+++.|
T Consensus 12 dk~fs~ps~lkr 23 (29)
T d2j7ja2 12 DKRFSLPSRLKR 23 (29)
T ss_dssp CCEESSHHHHHH
T ss_pred cccccCHHHHhh
Confidence 445788877654
No 9
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=1.64 E-value=4.6e+02 Score=15.26 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.0
Q ss_pred CCCCCcccccCCCCCh
Q 009587 19 DQLPSISYCITSPPPW 34 (531)
Q Consensus 19 ~~~~~~~~~~~~~pp~ 34 (531)
|+.+..+|++.-+||.
T Consensus 5 DP~TG~iYH~~f~ppp 20 (31)
T d1zaka2 5 DPVTGKIYHLKYSPPE 20 (31)
T ss_dssp CTTTCCEEESSSSCCC
T ss_pred CCCCCcEeEEecCCCC
Confidence 5567788888888764
No 10
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.63 E-value=6.2e+02 Score=21.01 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=11.3
Q ss_pred HHHHHHHHH-hhhcCCCCccchhhc
Q 009587 474 VAGCVAFFL-DNTLHKKDGQVRKDR 497 (531)
Q Consensus 474 ~g~l~ailL-n~~~~~~~~~~~~~~ 497 (531)
+|++++.++ +.++.++ .++.+||
T Consensus 205 ~Ga~laa~ly~~~~~~~-~~~~~~~ 228 (234)
T d1ymga1 205 IGAGLGSLLYDFLLFPR-LKSVSER 228 (234)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHcCC-Ccchhhh
Confidence 455555555 5555443 2333454
Done!