Query 009588
Match_columns 531
No_of_seqs 283 out of 2190
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 14:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.2E-55 4.8E-60 444.9 53.4 437 57-497 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 5.4E-51 1.2E-55 416.9 55.7 433 58-493 25-467 (478)
3 PRK00187 multidrug efflux prot 100.0 1.8E-50 3.9E-55 413.2 54.1 427 58-487 6-443 (464)
4 PRK01766 multidrug efflux prot 100.0 2.2E-48 4.8E-53 399.3 54.7 434 56-492 6-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 1.7E-48 3.7E-53 398.0 51.8 424 58-487 8-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 6.4E-48 1.4E-52 390.6 52.1 423 58-492 5-434 (441)
7 TIGR01695 mviN integral membra 100.0 4.3E-36 9.3E-41 313.0 50.5 414 63-488 1-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 1.3E-35 2.8E-40 308.3 46.8 414 65-487 2-433 (488)
9 TIGR00797 matE putative efflux 100.0 1.4E-35 3E-40 293.7 42.4 338 70-410 1-341 (342)
10 KOG1347 Uncharacterized membra 100.0 4.1E-36 8.8E-41 301.5 33.9 445 58-504 24-468 (473)
11 PRK15099 O-antigen translocase 100.0 6.4E-34 1.4E-38 288.7 44.1 404 64-486 3-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.1E-28 2.3E-33 250.5 48.8 385 92-488 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 3.8E-27 8.3E-32 234.5 49.6 422 60-489 5-438 (518)
14 PRK10459 colanic acid exporter 100.0 8.7E-28 1.9E-32 249.5 46.1 398 61-487 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 2.7E-25 5.8E-30 230.3 40.4 391 59-471 3-395 (480)
16 COG0534 NorM Na+-driven multid 99.9 3.2E-20 7E-25 188.5 25.2 210 278-490 12-223 (455)
17 PRK10367 DNA-damage-inducible 99.9 6E-20 1.3E-24 186.5 26.2 207 279-487 5-211 (441)
18 PRK00187 multidrug efflux prot 99.9 1.3E-19 2.9E-24 185.6 27.9 206 58-264 232-444 (464)
19 PRK10189 MATE family multidrug 99.9 1.5E-19 3.2E-24 185.4 26.8 206 278-486 24-235 (478)
20 PRK01766 multidrug efflux prot 99.9 1.2E-19 2.5E-24 186.6 25.4 211 276-489 5-219 (456)
21 PRK09575 vmrA multidrug efflux 99.9 1.7E-19 3.7E-24 184.5 24.9 209 278-488 7-215 (453)
22 TIGR01695 mviN integral membra 99.8 2.6E-17 5.7E-22 171.7 31.5 205 58-264 219-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 2.4E-16 5.2E-21 150.6 32.9 272 64-352 1-273 (273)
24 PF03023 MVIN: MviN-like prote 99.8 7.7E-16 1.7E-20 156.7 31.0 207 58-266 194-405 (451)
25 TIGR00797 matE putative efflux 99.7 7.4E-16 1.6E-20 152.5 25.3 194 291-487 1-196 (342)
26 COG0728 MviN Uncharacterized m 99.7 1.7E-14 3.6E-19 144.6 34.3 207 59-267 229-440 (518)
27 PF01554 MatE: MatE; InterPro 99.7 1.4E-17 3E-22 145.8 7.4 162 291-454 1-162 (162)
28 TIGR02900 spore_V_B stage V sp 99.7 2.9E-15 6.2E-20 155.8 25.0 202 58-264 221-434 (488)
29 PF01554 MatE: MatE; InterPro 99.7 2.4E-17 5.3E-22 144.3 6.0 160 70-230 1-162 (162)
30 PRK10459 colanic acid exporter 99.7 1.6E-13 3.4E-18 142.8 34.8 200 58-263 203-404 (492)
31 PF13440 Polysacc_synt_3: Poly 99.6 4.6E-13 1E-17 126.3 30.2 247 80-350 2-250 (251)
32 PRK15099 O-antigen translocase 99.6 6.9E-14 1.5E-18 142.1 25.9 198 58-262 211-410 (416)
33 COG2244 RfbX Membrane protein 99.6 8.7E-13 1.9E-17 136.8 26.1 187 57-249 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.4 1.3E-09 2.9E-14 111.8 31.6 421 65-487 4-469 (549)
35 KOG2864 Nuclear division RFT1 99.3 3.7E-08 8E-13 94.5 34.1 417 59-488 5-449 (530)
36 KOG1347 Uncharacterized membra 99.2 1.7E-09 3.6E-14 109.6 19.5 207 279-489 24-231 (473)
37 PF07260 ANKH: Progressive ank 98.8 1.7E-05 3.8E-10 73.3 29.0 262 59-329 8-285 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 1.5E-05 3.2E-10 68.0 17.8 80 184-265 2-81 (146)
39 PF04506 Rft-1: Rft protein; 98.4 4E-05 8.6E-10 79.2 22.0 203 61-264 252-470 (549)
40 PF01943 Polysacc_synt: Polysa 98.2 0.00025 5.5E-09 67.3 20.1 187 287-487 3-190 (273)
41 KOG2864 Nuclear division RFT1 98.0 0.0023 4.9E-08 62.4 22.4 201 62-264 239-449 (530)
42 COG4267 Predicted membrane pro 98.0 0.014 3E-07 55.6 36.7 342 105-473 67-431 (467)
43 PF13440 Polysacc_synt_3: Poly 97.9 0.0027 5.8E-08 59.4 21.2 165 305-486 6-171 (251)
44 PF07260 ANKH: Progressive ank 97.9 0.0042 9.2E-08 57.9 20.5 156 278-443 6-168 (345)
45 PF14667 Polysacc_synt_C: Poly 97.9 9E-05 2E-09 63.2 9.1 79 407-488 2-80 (146)
46 COG4267 Predicted membrane pro 81.2 58 0.0013 32.0 19.1 135 335-486 75-209 (467)
47 PF12794 MscS_TM: Mechanosensi 80.1 63 0.0014 31.7 19.3 28 357-384 118-145 (340)
48 PF05684 DUF819: Protein of un 75.8 69 0.0015 32.0 13.2 20 466-485 146-165 (378)
49 PRK06814 acylglycerophosphoeth 71.0 2.1E+02 0.0047 33.4 40.2 28 199-226 132-159 (1140)
50 PRK09757 PTS system N-acetylga 60.1 1.5E+02 0.0033 27.8 17.8 34 333-366 110-143 (267)
51 PF04505 Dispanin: Interferon- 56.6 74 0.0016 23.7 7.0 39 338-376 34-72 (82)
52 KOG2533 Permease of the major 48.9 3.3E+02 0.0072 28.3 29.4 63 196-258 155-221 (495)
53 PF03547 Mem_trans: Membrane t 47.3 1.3E+02 0.0029 29.9 9.6 13 461-473 118-130 (385)
54 PF00558 Vpu: Vpu protein; In 44.0 20 0.00044 26.5 2.2 25 479-503 24-48 (81)
55 PF05977 MFS_3: Transmembrane 42.2 4.3E+02 0.0094 27.8 38.1 47 64-110 12-60 (524)
56 PRK01637 hypothetical protein; 40.8 3.3E+02 0.0071 25.9 17.4 10 347-356 115-124 (286)
57 TIGR00822 EII-Sor PTS system, 38.8 3.4E+02 0.0073 25.5 17.4 36 331-366 107-142 (265)
58 PF07074 TRAP-gamma: Transloco 37.7 93 0.002 26.7 5.4 52 432-486 16-67 (170)
59 PF05313 Pox_P21: Poxvirus P21 36.5 1.4E+02 0.0029 26.0 6.2 27 238-264 135-161 (189)
60 COG0798 ACR3 Arsenite efflux p 34.1 4.5E+02 0.0098 25.6 14.7 195 72-276 147-341 (342)
61 PRK09556 uhpT sugar phosphate 30.4 5.8E+02 0.013 26.1 11.4 243 260-521 3-248 (467)
62 PF06679 DUF1180: Protein of u 30.3 61 0.0013 27.8 3.3 13 515-527 147-159 (163)
63 PF01102 Glycophorin_A: Glycop 29.3 62 0.0014 26.2 3.0 6 468-473 71-76 (122)
64 PRK03612 spermidine synthase; 29.2 6.9E+02 0.015 26.2 23.0 46 213-260 151-196 (521)
65 PF03904 DUF334: Domain of unk 29.0 2.7E+02 0.0058 25.3 7.1 39 134-172 142-180 (230)
66 PF11457 DUF3021: Protein of u 27.0 3.5E+02 0.0076 22.1 15.7 27 360-387 4-30 (136)
67 PTZ00370 STEVOR; Provisional 26.3 1E+02 0.0022 29.0 4.2 34 462-495 255-291 (296)
68 PF05975 EcsB: Bacterial ABC t 25.9 6.7E+02 0.015 25.0 20.1 36 356-391 89-124 (386)
69 PLN00028 nitrate transmembrane 25.5 7.5E+02 0.016 25.4 35.9 15 118-132 86-100 (476)
70 PF14184 YrvL: Regulatory prot 24.9 4E+02 0.0086 22.0 13.6 112 143-256 5-117 (132)
71 COG2211 MelB Na+/melibiose sym 24.8 7.9E+02 0.017 25.4 31.3 51 60-110 10-63 (467)
72 TIGR00881 2A0104 phosphoglycer 24.4 5.6E+02 0.012 24.6 9.8 10 461-470 147-156 (379)
73 PRK09546 zntB zinc transporter 23.9 2.2E+02 0.0048 27.6 6.5 49 439-490 267-323 (324)
74 PF01102 Glycophorin_A: Glycop 23.7 1.1E+02 0.0024 24.8 3.6 26 240-265 67-92 (122)
75 TIGR00383 corA magnesium Mg(2+ 23.5 2.4E+02 0.0053 27.2 6.7 50 438-490 260-317 (318)
76 KOG1607 Protein transporter of 23.0 7E+02 0.015 24.1 10.6 19 395-413 196-214 (318)
77 PF07214 DUF1418: Protein of u 22.6 3.6E+02 0.0079 20.7 6.7 20 461-480 39-58 (96)
78 KOG3832 Predicted amino acid t 22.6 4.2E+02 0.0092 23.6 7.0 39 489-527 75-116 (319)
79 TIGR00765 yihY_not_rbn YihY fa 21.4 6.7E+02 0.014 23.3 22.3 26 209-234 190-215 (259)
80 PRK08633 2-acyl-glycerophospho 21.2 1.3E+03 0.029 26.8 39.9 20 201-220 129-148 (1146)
81 PF10669 Phage_Gp23: Protein g 21.2 31 0.00067 26.0 -0.1 10 484-493 32-41 (121)
82 TIGR00895 2A0115 benzoate tran 21.0 7.7E+02 0.017 23.9 15.2 10 461-470 168-177 (398)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=2.2e-55 Score=444.93 Aligned_cols=437 Identities=25% Similarity=0.345 Sum_probs=414.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcc
Q 009588 57 IITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPK 136 (531)
Q Consensus 57 ~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 136 (531)
.++..|+++++++|++++++++.+++++|++++||+|++++++.+++.++..+. ..+..|++.|..+.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 357899999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 009588 137 LLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTL 215 (531)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~ 215 (531)
++++..++++.++++++++..++ +.+.++++.+++.++|+.+.+..|+++..++.|+..+..+..+++|+.||++.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999888776 99999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC-cccchhHHHHHHHHHHHHHHHHHHHHHcCC-CccccCCCCHHHHhcHHHHHHhHhhH
Q 009588 216 ASLAGTIIHLPINFLLVTH-LR-LGVLGVAAAAALSNLCVLFSLVVYIWASGL-HEPTWTKPTRECLTGWKPLLKLAAPS 292 (531)
Q Consensus 216 ~~i~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~i~~~~~p~ 292 (531)
.++++.++|++++++|+++ ++ +|+.|+++||++++.+..++.++++.++++ ......+..+++++..|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999888764 22222223366889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 009588 293 CVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAA 372 (531)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (531)
.+++......+...+.+++++|+ +++|+|+++.++.++.+++..|++++.+|.+++++|+||+|++++..+.++.++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999976 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHH
Q 009588 373 IMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVA 452 (531)
Q Consensus 373 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 452 (531)
.+++..+++++++++++..+|++|+++.+.+..++++.++..++++++.+..+++|+.||++.++..++++.|++.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 009588 453 IGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRA 497 (531)
Q Consensus 453 ~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 497 (531)
+.+.... +|..|+|++...++.+..++..+++++.+|++...+.
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9998877 8999999999999999999999999999998776543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=5.4e-51 Score=416.88 Aligned_cols=433 Identities=16% Similarity=0.200 Sum_probs=400.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcch
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKL 137 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 137 (531)
-+..|++++.++|.++++++..+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|++|++|+++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35689999999999999999999999999999999999999999999998887 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHH
Q 009588 138 LSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLH--QDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLT 214 (531)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~ 214 (531)
+++..++++.++++++++.+++ +.+.++++.++. .|+|+.+.+..|+++..++.|+..+...+.+++|+.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 9999999999999999988876 778889999884 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----CcccchhHHHHHHHHHHHHHHHHHHHHHcCC--CccccCC-CCHHHHhcHHHHHH
Q 009588 215 LASLAGTIIHLPINFLLVTHL----RLGVLGVAAAAALSNLCVLFSLVVYIWASGL--HEPTWTK-PTRECLTGWKPLLK 287 (531)
Q Consensus 215 ~~~i~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~k~i~~ 287 (531)
+.+++..++|+++++++++.. ++|+.|+++|+.+++.+..++..+++.++++ .+.++++ +.+.+++.+|++++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHH
Confidence 999999999999999999853 7899999999999999998887666654322 1222222 11346788999999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 009588 288 LAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVA 367 (531)
Q Consensus 288 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~ 367 (531)
.|+|..++.........+.+.+++.+++ +++|+|+++.++.++.+++..|++++.+|.+++++|+||++++|+..+.+
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~ 341 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHV 341 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999998888888888898865 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHH
Q 009588 368 VFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLA 447 (531)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 447 (531)
.++++++++..+++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.+++.||++.++++++.+.|++
T Consensus 342 ~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v 421 (478)
T PRK10189 342 FWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGC 421 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 009588 448 GMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQ 493 (531)
Q Consensus 448 ~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~ 493 (531)
.+|+.+++....++|+.|+|++..+++.+..++.++++++.+|+++
T Consensus 422 ~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 422 RVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 9999999988778999999999999999999999999999999883
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.8e-50 Score=413.18 Aligned_cols=427 Identities=25% Similarity=0.340 Sum_probs=392.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcch
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKL 137 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 137 (531)
++..|++++.++|.++++++..+.+.+|+.+++|+|++++++++++.++..+. ..+..|++++..+.++|++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 56899999999999999999999999999999999999999999999999887 78889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 009588 138 LSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLAS 217 (531)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~ 217 (531)
+++.++.++.+.++++++..++..+.+|++.+++.++|+.+.+.+|+++..++.|+..+....++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999999887775577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----CcccchhHHHHHHHHHHHHHHHHHHHHHcCCC-cccc-CCCCHHHHhcHHHHHHhHhh
Q 009588 218 LAGTIIHLPINFLLVTHL----RLGVLGVAAAAALSNLCVLFSLVVYIWASGLH-EPTW-TKPTRECLTGWKPLLKLAAP 291 (531)
Q Consensus 218 i~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~k~i~~~~~p 291 (531)
+++.++|++++++|++++ ++|+.|+++|+.+++....+...++++++++. +.++ +++.+++++..|++++.|+|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999863 48999999999999988887776676654322 1221 12224567789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 009588 292 SCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVA 371 (531)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (531)
.++++..+...+.+++.+++++++ ++++++++++++..+.+.+..+++++..+.+++++|+||+|++++..+.++.++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G~--~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALGS--TQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999975 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhcccccccC--cH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHH
Q 009588 372 AIMGLSATVFASGMRDRWGRLFTN--DK---EIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYL 446 (531)
Q Consensus 372 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 446 (531)
++++++.+++++++++++.++|++ |+ |+.+.+..++++.+.+.++++++.+..+++++.||++.++++++++.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 44 6788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 009588 447 AGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGT 487 (531)
Q Consensus 447 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 487 (531)
+++|+.+.+.+.+++|+.|+|+++.+++++..++...++++
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999998888776644
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.2e-48 Score=399.25 Aligned_cols=434 Identities=24% Similarity=0.397 Sum_probs=399.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCc
Q 009588 56 EIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRP 135 (531)
Q Consensus 56 ~~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 135 (531)
..++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++.... ..+..|++.+..+.+||++|++|+
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4467899999999999999999999999999999999999999999999887766 688899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHH
Q 009588 136 KLLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLT 214 (531)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~ 214 (531)
+++++.++.++.+.++++++++++ +.+.++++.+++.++|..+.+..|+++.+++.++..+...+++++++.|+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 999999999999999999888876 7777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh----cCcccchhHHHHHHHHHHHHHHHHHHHHHcCCCc--cccCCCCHHHHhcHHHHHHh
Q 009588 215 LASLAGTIIHLPINFLLVTH----LRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHE--PTWTKPTRECLTGWKPLLKL 288 (531)
Q Consensus 215 ~~~i~~~~~~i~~~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~i~~~ 288 (531)
+.++++.++|+++++++++. .++|+.|+++++.+++++..++..++++++++.+ +.+.++.+++++..|++++.
T Consensus 165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l 244 (456)
T PRK01766 165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKL 244 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHc
Confidence 99999999999999999864 2589999999999999999998877776544321 11222224467789999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 009588 289 AAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAV 368 (531)
Q Consensus 289 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~ 368 (531)
++|.+++...+...+.++..+++++++ +++++|+++.++.++...+..+++.+..+.+++++|+||++++++..+.++
T Consensus 245 ~~P~~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~ 322 (456)
T PRK01766 245 GLPIGLAIFFEVSLFAVVTLLVSPLGT--VTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGL 322 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999865 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHH
Q 009588 369 FVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAG 448 (531)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 448 (531)
.+++.++++.+++++.+++++..+|++|+++.+.+..++++..+..++++++....+++++.||++.++++++++.|++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~ 402 (456)
T PRK01766 323 AVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLG 402 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 009588 449 MPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDF 492 (531)
Q Consensus 449 i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~ 492 (531)
+|..+.+...+++|..|+|+++.+++.+..++.++++++.+|+.
T Consensus 403 i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 403 LPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999988887766554
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.7e-48 Score=398.02 Aligned_cols=424 Identities=17% Similarity=0.189 Sum_probs=389.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcc
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPK 136 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 136 (531)
++..|++++.++|.++++++..+++++|+.++++ +|++++++++++.++..+. ..+..+++.+..+.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4578999999999999999999999999999999 6999999999999999887 7788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 009588 137 LLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTL 215 (531)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~ 215 (531)
++++.+++++.+.++++++..++ +.+.++++.+++.++|..+.+..|+++.+++.++..+......++|+.|+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988876 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCCC-ccccCCCCHHHHhcHHHHHHhHhhHHH
Q 009588 216 ASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLH-EPTWTKPTRECLTGWKPLLKLAAPSCV 294 (531)
Q Consensus 216 ~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~i~~~~~p~~~ 294 (531)
.++.+.++|+++++++++.+++|+.|+++|+++++.+..++..+++++++.. +.+.+.+ +++++..|++++.|+|..+
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHH
Confidence 9999999999999999998889999999999999999999887777654432 1211222 4567789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 009588 295 SVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIM 374 (531)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (531)
+.....+...+.+.+.+.+++ .+++|+|+++.++..+...+..|++++..|.+++++|+||+|++++..+.++.+++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999988888888873 4689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhcccccccC-cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHH
Q 009588 375 GLSATVFASGMRDRWGRLFTN-DKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAI 453 (531)
Q Consensus 375 ~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~ 453 (531)
+++.+++++++++++..+|++ |+|+.+.+.+++++.+.+.++++++.+..+++++.||++.++..++... ++++|..+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHH
Confidence 999999999999999999995 7899999999999999999999999999999999999999999998764 68899999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 009588 454 GLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGT 487 (531)
Q Consensus 454 ~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 487 (531)
.+... +|+.|+|+++.+++.+..++..+++++
T Consensus 404 ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 404 ILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 88765 799999999999999988887766544
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=6.4e-48 Score=390.63 Aligned_cols=423 Identities=17% Similarity=0.192 Sum_probs=373.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcc
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGHL-GDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPK 136 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 136 (531)
.++.|++++.++|.++++++..+++.+|+.+++++ |++++++++++.++..+. ..+..+++.+..+.+||++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45689999999999999999999999999999997 677999999999999887 7888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 009588 137 LLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTL 215 (531)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~ 215 (531)
++++..++++.+.++++++..++ ..+.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+++|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988876 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCCCc-cccCCCCHHH-HhcHHHHHHhHhhHH
Q 009588 216 ASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHE-PTWTKPTREC-LTGWKPLLKLAAPSC 293 (531)
Q Consensus 216 ~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~k~i~~~~~p~~ 293 (531)
.++++.++|+++++++++.+++|+.|+++||.+++.+..++..++++++++.+ .+.+.+ +++ ++..|++++.|.|..
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEML-KTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHh-hhhhHHHHHHHHHhCchHH
Confidence 99999999999999999988899999999999999999888777776543221 111112 222 346899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 009588 294 VSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAI 373 (531)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~ 373 (531)
++.......+.+.+.+++++++ +++|+|+++.++.++.+++..|++++.+|.+++++|+||+|++|+..+.+.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~--~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~ 320 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGS--DIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGI 320 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999965 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCC---cchhhHHHHHHHHHHHHH
Q 009588 374 MGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSAR---PSIAANVNLSAFYLAGMP 450 (531)
Q Consensus 374 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~ 450 (531)
+++..+++++++++++..+|++|+|+.+.+..++++.++..+......+..+++++.+| ++.++.+++++.|+..++
T Consensus 321 ~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~ 400 (441)
T PRK10367 321 VALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLT 400 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764443345444555555555 999999999987642221
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 009588 451 VAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDF 492 (531)
Q Consensus 451 ~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~ 492 (531)
. +.+|..|+|++..+++.+..++..+++++. ||+
T Consensus 401 ~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 401 L-------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred H-------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 1 237999999999999999999988765554 744
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=4.3e-36 Score=312.96 Aligned_cols=414 Identities=14% Similarity=0.091 Sum_probs=349.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHH-HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhcCCCcchHH
Q 009588 63 SLFNLAFPIALTALIIYSRSILSMLFLGH-LGDLEL-AGGSLAIAFANITGYSVL-SGLALGMEPLCSQAFGAQRPKLLS 139 (531)
Q Consensus 63 ~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~-~~~~~a~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~ 139 (531)
++.|.+...+++++++.+++++|..+++| +|++++ ++++.+.++..++..... .|++++..+...++.+++ ++++
T Consensus 1 ~~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~ 78 (502)
T TIGR01695 1 SLLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEAR 78 (502)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHH
Confidence 36788999999999999999999999999 999999 899999999877633333 568888888777664332 6777
Q ss_pred HHHHHHHHHHHHHHHH-HHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 009588 140 LTLQRSVIFLLFSSIP-ISLL-WLNMSKILLYL--HQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTL 215 (531)
Q Consensus 140 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~ 215 (531)
+.+.+++....+.+.+ ..++ +++.+++..++ +.+++..+.+..|++++.++.++..+..+.++++|+.+|++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (502)
T TIGR01695 79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence 7777766665544443 4444 67777777777 456777788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccchhH--HHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHhcHHHHHHhHhhHH
Q 009588 216 ASLAGTIIHLPINFLLVTHLRLGVLGVA--AAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSC 293 (531)
Q Consensus 216 ~~i~~~~~~i~~~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~ 293 (531)
.+++..+++++..+++. .++|..|++ +++++++.+..++.+++.++++.. .+. ++ +.+++..|++++++.|..
T Consensus 159 ~~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~k~~l~~~~p~~ 233 (502)
T TIGR01695 159 SPILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFL-LKP-RF-NFRDPGLKRFLKLFLPTT 233 (502)
T ss_pred HHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ccC-cC-CCCChhHHHHHHHHHHHH
Confidence 99998888776544443 458999988 999999999988876666554321 111 11 235577899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 009588 294 VSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYV-FPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAA 372 (531)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (531)
+++...++...+|..+.+.+++ +++++|+.+.++..+... +..+++++..|.+++++|+||.+++++..++++++..
T Consensus 234 ~~~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~ 311 (502)
T TIGR01695 234 LGSSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSL 311 (502)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999988777654 899999999999988664 6789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhcccccccC----cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHH
Q 009588 373 IMGLSATVFASGMRDRWGRLFTN----DKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAG 448 (531)
Q Consensus 373 ~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 448 (531)
.++++.++++.++++++..++.+ |++.++.+..++++++++.++.+++....+.+++.||+|.+++.+.... +++
T Consensus 312 ~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~ 390 (502)
T TIGR01695 312 LLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLN 390 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHH
Confidence 99999999999999999999976 5677889999999999999999999999999999999999999999976 688
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 009588 449 MPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTT 488 (531)
Q Consensus 449 i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~ 488 (531)
+++.+.+... +|..|+|+++.+++.+..++..++.+|+
T Consensus 391 i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 391 ALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877654 8999999999999999998887777664
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.3e-35 Score=308.31 Aligned_cols=414 Identities=17% Similarity=0.172 Sum_probs=348.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchHHHHHH
Q 009588 65 FNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQ 143 (531)
Q Consensus 65 ~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 143 (531)
.+.+.|.++++++..+.+++|+.+++| +|++++|+++.+.++..+.......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 9999999999999998887445567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009588 144 RSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTI 222 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~~ 222 (531)
+++.+.++.++++.++ +.+.+++...+..+++. ..++++..+..++..+....++++|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988876 66666666666555543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----cCcccchhHHHHHHHHHHHHHHHHHHHHHcCCC--ccccCCCCHHHHhcHHHHHHhHhhHHHH
Q 009588 223 IHLPINFLLVTH-----LRLGVLGVAAAAALSNLCVLFSLVVYIWASGLH--EPTWTKPTRECLTGWKPLLKLAAPSCVS 295 (531)
Q Consensus 223 ~~i~~~~~li~~-----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~i~~~~~p~~~~ 295 (531)
+++.+...++.. .++|+.|+++++.+++.+..++..++.+++++. +..+.++.+.+++..|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998877666542 235678888999999999988876665544321 1112112234567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC--c---h---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 009588 296 VCLEWWWYEIMIVLCGLLVD--P---K---STVASM-GILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVV 366 (531)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~--g---~---~~~a~~-~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~ 366 (531)
++...+...+|+.++++... | . +.++.| +++.++..+...+..+++++..|.+++++|+||.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888875421 0 1 233444 4566788888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHH
Q 009588 367 AVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYL 446 (531)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 446 (531)
.+++...++++.++++.++++++..++.++++ +.+++++++...++..++....+++++.||+|..++.++++. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999876543 678899999999999999999999999999999999999987 6
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 009588 447 AGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGT 487 (531)
Q Consensus 447 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 487 (531)
+++++.+.+...+.+|..|+|+++.+++.+..++..++.+|
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887764466899999999999999999998887765
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.4e-35 Score=293.66 Aligned_cols=338 Identities=28% Similarity=0.431 Sum_probs=309.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 009588 70 PIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFL 149 (531)
Q Consensus 70 p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 149 (531)
|.++++++..+...+|+.+++++|++++++++.+.++..+. ..+..|++++..+.++++.|++|+++.++.++..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988877 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 009588 150 LFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPIN 228 (531)
Q Consensus 150 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~~~~i~~~ 228 (531)
.+.+++++++ +.+.+++..+++.+++..+.+..++++++++.++..+..+..+++++.||++...+.++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998876 788889988888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-cccchhHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHhcHHHHHHhHhhHHHHHHHHHHHHHHH
Q 009588 229 FLLVT-HLR-LGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIM 306 (531)
Q Consensus 229 ~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~~~~~~~~~~~~~~ 306 (531)
++++. .++ +|+.|+++++.+++++..++..++.+++++.+.+|+...+++++..|+++++|+|.+++++..++...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99987 667 8899999999999999998887776654433333322224567789999999999999999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 009588 307 IVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMR 386 (531)
Q Consensus 307 ~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
+.+++.+++ +++++|+++.++.++...+..+++++..|.++++++++|.++.++..++++++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g~--~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLGS--IALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998865 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCcHHHHHHHHHHHHHH
Q 009588 387 DRWGRLFTNDKEIIRLTSAALPIL 410 (531)
Q Consensus 387 ~~i~~l~~~~~~~~~~~~~~l~i~ 410 (531)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999888888764
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=4.1e-36 Score=301.45 Aligned_cols=445 Identities=42% Similarity=0.649 Sum_probs=423.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcch
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKL 137 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 137 (531)
..+.|++++++.|..+..+.+.....+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67899999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 009588 138 LSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLAS 217 (531)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~ 217 (531)
...+.+++..+....+++...++.+.+|++..+++++++...+..|.++..+..+.+........+++++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHhcHHHHHHhHhhHHHHHH
Q 009588 218 LAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVC 297 (531)
Q Consensus 218 i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~~~~~ 297 (531)
....++|+.+++++++..++|..|++++..+++.+...+...|..... ....|..+... ++.++++++.+.|..++..
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999988887665 56677777555 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 009588 298 LEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLS 377 (531)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (531)
+++..+.+..++.+.+++...++++.++..++....+++..+++.+...++++.+|+|+++++|.........++.++..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998656799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 009588 378 ATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGF 457 (531)
Q Consensus 378 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 457 (531)
.+..++...+.+..+|++|+++.+......++++...++++.+.+..++.++.|+++...++++.+.+++++|+.+.+..
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccC
Q 009588 458 LLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKRAQILTYTG 504 (531)
Q Consensus 458 ~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (531)
..++|..|+|.+...+..+..........+.+|+++.++..++....
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~ 468 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIAS 468 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhh
Confidence 88899999999999998888888888889999999999888876643
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=6.4e-34 Score=288.65 Aligned_cols=404 Identities=15% Similarity=0.050 Sum_probs=341.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchHHHHH
Q 009588 64 LFNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTL 142 (531)
Q Consensus 64 i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 142 (531)
+.|.+.+...+.++..+.+++...+++| +|++++|.++...++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 99999999999999888875556888989989999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009588 143 QRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGT 221 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~ 221 (531)
++++.+.+..+++.+++ +.+.+|+...+..+++. ..++.+..+..++..+.....+.+|+.+|.+.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 88888988877666642 24456666666677778889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHhcHHHHHHhHhhHHHHHHHHHH
Q 009588 222 IIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWW 301 (531)
Q Consensus 222 ~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~~~~~~~~~ 301 (531)
++|+.+ ++++... .|+.|+++|+++++.+..+...++++++++.+.+..++ +++++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444432 49999999999999999887766666544322211122 34677889999999999999999999
Q ss_pred HHHHHHHHHh-cCCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 009588 302 WYEIMIVLCG-LLVDPKSTVASMGILIQTTSL-IYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSAT 379 (531)
Q Consensus 302 ~~~~~~~~~~-~~~~g~~~~a~~~~~~~i~~~-~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (531)
....++.+++ .+ |++++|+|+++.|+.+. ...+..+++++..|.++++ +|.++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~--g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHY--SWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcC--CHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 55 45999999999999875 5889999999999999985 6789999999999999999999999
Q ss_pred HHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q 009588 380 VFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLL 459 (531)
Q Consensus 380 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 459 (531)
+++++++++++.++.+|+ ++.+.+++++++++.++...+......+.+.++++......+... ++++++.+++...
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li~~- 384 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWLIPL- 384 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-
Confidence 999999999999999875 667899999999999999888888887778888877777776654 6888888887665
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHh
Q 009588 460 GIGFCGLWQGLLAAQVCCAGLMLYVVG 486 (531)
Q Consensus 460 ~~g~~G~~~a~~~~~~i~~~~~~~~~~ 486 (531)
+|..|+++++.+++.+..++......
T Consensus 385 -~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 385 -HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988776554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.1e-28 Score=250.55 Aligned_cols=385 Identities=17% Similarity=0.151 Sum_probs=335.8
Q ss_pred cChH-HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 009588 92 LGDL-ELAGGSLAIAFANITGYSVL-SGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLL-WLNMSKILL 168 (531)
Q Consensus 92 lg~~-~~~~~~~a~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 168 (531)
+|.. +..+|.++..+.+++...+. .+++++..|..++.. ++++++.++..+..+.+..+.+++++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6766 67799999999999844454 468999999999999 8899999999999988888888888876 888888888
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhcCcc---cchhH
Q 009588 169 YL--HQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLG---VLGVA 243 (531)
Q Consensus 169 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g---~~g~a 243 (531)
.+ +.+++..+.+...+++.++..++..+..++.+++++++|...+....++.++..++..+++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 77 5578889999999999999999999999999999999999999998888777666554444443 56 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-ccccCCCCHHHHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q 009588 244 AAAALSNLCVLFSLVVYIWASGLH-EPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVAS 322 (531)
Q Consensus 244 ~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 322 (531)
+|.+++.++..++.+...++.+.. +.++ +.+.+..|++++...|..+.....++...+++.+.+.+++ ..+++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~--G~vs~ 235 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKF----DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE--GSVSA 235 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccC----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cHHHH
Confidence 999999999998887777655433 2222 2234668999999999999999999999999999999876 89999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccccccc----CcH
Q 009588 323 MGILIQTTSLIY-VFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFT----NDK 397 (531)
Q Consensus 323 ~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~ 397 (531)
++.+.++.++.. .+..+++++..|.+++...+||.++.++..+++++....+.+|.++++..+++++++++. .|+
T Consensus 236 l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~ 315 (451)
T PF03023_consen 236 LNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTA 315 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCH
Confidence 999999999866 556899999999999999999999999999999999999999999999999999999985 256
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 009588 398 EIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCC 477 (531)
Q Consensus 398 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~ 477 (531)
+..+....++.+++++.++.+++.++...+++.||+|.+++++.++. ++++.+.+.+... +|..|+++++.++..+.
T Consensus 316 ~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~--~g~~Glala~sl~~~i~ 392 (451)
T PF03023_consen 316 EDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPF--FGVAGLALATSLSAIIS 392 (451)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 66888999999999999999999999999999999999999999987 6888888766555 89999999999999999
Q ss_pred HHHHHHHHhcC
Q 009588 478 AGLMLYVVGTT 488 (531)
Q Consensus 478 ~~~~~~~~~~~ 488 (531)
.++.+..++|+
T Consensus 393 ~~~l~~~l~r~ 403 (451)
T PF03023_consen 393 ALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHH
Confidence 99998887776
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.98 E-value=3.8e-27 Score=234.54 Aligned_cols=422 Identities=14% Similarity=0.085 Sum_probs=354.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChH-HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhhhcCCCcc
Q 009588 60 ESKSLFNLAFPIALTALIIYSRSILSMLFLGH-LGDL-ELAGGSLAIAFANITGYSVLSG-LALGMEPLCSQAFGAQRPK 136 (531)
Q Consensus 60 ~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~-~~~~~~~a~~i~~~~~~~~~~g-l~~~~~~~~s~~~g~~~~~ 136 (531)
...+++|.++......+++.+.+++...+++. +|+. ...++.++..+.+++--.+..| ++++..|...++..+++++
T Consensus 5 ~~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~ 84 (518)
T COG0728 5 SKMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEE 84 (518)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhh
Confidence 34567888888888899999999999999999 9995 7789999999999986555554 7999999999998877777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhH
Q 009588 137 LLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYL-HQ--DPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHP 212 (531)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~ 212 (531)
+.++..+........+.+.++++ .++++.++... +. +++....+....+++.+..++.++.....+.|++.+|...
T Consensus 85 ~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~ 164 (518)
T COG0728 85 AARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFI 164 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeech
Confidence 77777777776777777777776 66666666344 22 2344446788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHhcHHHHHHhHhhH
Q 009588 213 LTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPS 292 (531)
Q Consensus 213 ~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~ 292 (531)
+.+..+.-++.-+.....+......-..+.+|+++++-+.+.++.+..+++.+...+...+ ++.+..|++.+.-.|.
T Consensus 165 ~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~---~~~~~lk~~~~~~~p~ 241 (518)
T COG0728 165 PAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFG---FKDPGLKRFLKLMLPA 241 (518)
T ss_pred hhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCC---CCchhHHHHHHHHHHH
Confidence 9999888777666555555544222367899999999999999998888776543222222 2336899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 009588 293 CVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIY-VFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVA 371 (531)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (531)
.++....++...+++.+.+.+.+ ..++.++.+.++.++.. .+..+++++..|.+|++..++|.++.++..+++++++
T Consensus 242 ~l~~sisQi~lli~~~iAS~l~~--Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ 319 (518)
T COG0728 242 LLGVSISQINLLIDTAIASFLAE--GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLT 319 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 99999999999999999999976 99999999999999955 7789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhccccccc----CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHH
Q 009588 372 AIMGLSATVFASGMRDRWGRLFT----NDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLA 447 (531)
Q Consensus 372 ~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 447 (531)
..+++|.++++..++++++++++ .+++........+..+.++.++..+..+....+++.+|+|.|+++.+++. ++
T Consensus 320 lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~ 398 (518)
T COG0728 320 LLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VV 398 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HH
Confidence 99999999999999999999983 24555778899999999999999999999999999999999999999987 68
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 009588 448 GMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTD 489 (531)
Q Consensus 448 ~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~ 489 (531)
++.+.+.+.. .+|..|+++++.++..+...+.++..+|+.
T Consensus 399 n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 399 NILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8887755544 489999999999999888888887777654
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=8.7e-28 Score=249.45 Aligned_cols=398 Identities=12% Similarity=0.113 Sum_probs=321.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchHH
Q 009588 61 SKSLFNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLS 139 (531)
Q Consensus 61 ~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~ 139 (531)
.++..+.+.+..++++...+.+++...+++| +|++++|.++.+..+.+++......|++++... . +| +.+
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~----~---~~--~~~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQ----R---QD--ISH 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHh----c---cc--CCH
Confidence 4678899999999999999999999999999 999999999999999998866777788776532 1 12 123
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 009588 140 LTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASL 218 (531)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i 218 (531)
+..++.+.+.+..++++.++ +.+.+++..++ ++++. ...+++..+..++..+.....+.+++.++.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 44566667777777776665 44444444444 34432 34577778888888888889999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHhcHHHHHHhHhhHHHHHHH
Q 009588 219 AGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCL 298 (531)
Q Consensus 219 ~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~~~~~~ 298 (531)
...++..+..+.++. .++|+.+.+++.+++..+..++..... +++ .++++ +.+++..|++++++.|...++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~-~~~~~----~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKI-YRPAL----HFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-ccc-CCccc----eecHHHHHHHHhhhHHHHHHHHH
Confidence 888887777766655 478999999999999888776543322 222 11111 23456789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 009588 299 EWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIY-VFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLS 377 (531)
Q Consensus 299 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (531)
.++...+|+++++.+. |++++|.|+.+.++.++.. .+...++++..|.+++. ++|.++.++.+++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 6899999999999988754 45566888999999885 578899999999999999999999
Q ss_pred HHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 009588 378 ATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGF 457 (531)
Q Consensus 378 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 457 (531)
+++++.+++++++.++.+++ +..+.+.+++++++.++..+.......+++.||+|..++.+++.. ++.+|..+.+..
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~ 376 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQ 376 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHh
Confidence 99999999999999988765 788999999999999999999999999999999999999888876 566776665544
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 009588 458 LLGIGFCGLWQGLLAAQVCCAGLMLYVVGT 487 (531)
Q Consensus 458 ~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 487 (531)
. +|..|+++++.+++.+..++..+...|
T Consensus 377 ~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 377 L--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred h--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 799999999999999988888776633
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=2.7e-25 Score=230.32 Aligned_cols=391 Identities=18% Similarity=0.148 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcch
Q 009588 59 TESKSLFNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKL 137 (531)
Q Consensus 59 ~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 137 (531)
+..+++.|.+.....+++...+.+++...+++| +|++++|.++.+.++.+++......|++.+..+.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 457889999999999999999999999999999 9999999999999999999777779999999999999876555444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHH
Q 009588 138 LSLT-LQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLA 216 (531)
Q Consensus 138 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~ 216 (531)
.... ....+...+..+.+.........+. ++ .....+++..+..++.......++.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444444444433333332222221 11 23445678889999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHhcHHHHHHhHhhHHHHH
Q 009588 217 SLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSV 296 (531)
Q Consensus 217 ~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~~~~ 296 (531)
.+.+ ..-+...+.+.. .......++.+.+..........+..++++...+ ..+ +..++..|+++++|+|..+.+
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKR-PIL-RFSLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-ccc-CchhHHHHHHHHHhhHHHHHH
Confidence 4444 111122222221 3455566777777777666655555422221111 111 224788999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 009588 297 CLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGL 376 (531)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (531)
....+...+|+++++.+. |++++|.|+.+.++......+..+++.+..|.+++.+.+++.++.++..+++.++...+++
T Consensus 227 ~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHH
Q 009588 377 SATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLG 456 (531)
Q Consensus 377 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 456 (531)
|..+++..+++++..++.+++ +..+...+.++++..++.++.......+++.|+++..++.+.++. ++++.+.+.+.
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li 382 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLI 382 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHH
Confidence 999999999999999998865 555899999999999999999999999999999999999999987 57777777665
Q ss_pred HHhcCCchhHHHHHH
Q 009588 457 FLLGIGFCGLWQGLL 471 (531)
Q Consensus 457 ~~~~~g~~G~~~a~~ 471 (531)
.. +|..|++.++.
T Consensus 383 ~~--~g~~g~~~a~~ 395 (480)
T COG2244 383 PR--FGLIGAAIATA 395 (480)
T ss_pred Hh--hhhhhHHHHHH
Confidence 54 89999999883
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.87 E-value=3.2e-20 Score=188.51 Aligned_cols=210 Identities=22% Similarity=0.203 Sum_probs=200.1
Q ss_pred HHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 009588 278 CLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRP 357 (531)
Q Consensus 278 ~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 357 (531)
.++..|+++++++|.+++++...+...+|+++++++++ +++++-++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~--~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGA--EALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 34678999999999999999999999999999999975 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhh
Q 009588 358 ERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAA 437 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 437 (531)
+++++..++++..+.+++++..++.+.+++++..++..++++.+.+..|+++..++.++..++....+++++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hc-CCchhHHHHHHHHHHHHHHHHHHHHhcCCh
Q 009588 438 NVNLSAFYLAGMPVAIGLGFL-LG-IGFCGLWQGLLAAQVCCAGLMLYVVGTTDW 490 (531)
Q Consensus 438 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~ 490 (531)
++++++. ++|+.+.+.+.+. .+ +|+.|+++|+.+++.+..++...++.+++.
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999988 7999999999887 45 999999999999999999999988877664
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.87 E-value=6e-20 Score=186.47 Aligned_cols=207 Identities=15% Similarity=0.101 Sum_probs=193.2
Q ss_pred HhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 009588 279 LTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPE 358 (531)
Q Consensus 279 ~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~ 358 (531)
++..|++++.++|.+++++...+...+|+.++++++ |++++++.+++.++..+...+..+++.+..+.+++++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 456889999999999999999999999999999996 4589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhH
Q 009588 359 RAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAAN 438 (531)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 438 (531)
++++..++++.++.+++++..++...+.+++..+++.|+|+.+.+.+|+++..++.++..+.....+++++.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 009588 439 VNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGT 487 (531)
Q Consensus 439 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 487 (531)
.++++. ++++++.+.+.+..++|+.|+++|+.+++.+..++..+++.+
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 789999998888778999999999999999988877665544
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.86 E-value=1.3e-19 Score=185.62 Aligned_cols=206 Identities=22% Similarity=0.241 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcch
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKL 137 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 137 (531)
++..|++++.++|.++++++......+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|++|++|+++
T Consensus 232 ~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~~~ 310 (464)
T PRK00187 232 RAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRLLE 310 (464)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 56799999999999999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--CH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChh
Q 009588 138 LSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQ--DP---NITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITH 211 (531)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~ 211 (531)
+++..+.++.++.+.+++.+++ +.+.+++..++.. ++ |+.+.+..|+++.+++.++..+..++.+.+|+.|+++
T Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~ 390 (464)
T PRK00187 311 ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDAR 390 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccH
Confidence 9999999999999999988876 7888889888843 33 6888999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHc
Q 009588 212 PLTLASLAGT-IIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWAS 264 (531)
Q Consensus 212 ~~~~~~i~~~-~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 264 (531)
.+++.+++.. ++++++++++.+.+++|+.|+++++.+++.+..++....++++
T Consensus 391 ~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 391 TTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 7999999999987789999999999999999988776666544
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.86 E-value=1.5e-19 Score=185.39 Aligned_cols=206 Identities=18% Similarity=0.226 Sum_probs=190.2
Q ss_pred HHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 009588 278 CLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRP 357 (531)
Q Consensus 278 ~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 357 (531)
+-+..|++++.++|.+++++...+...+|+.+++++++ +++|+++++.++..+.+.+..+++.+..+.+++++|+||+
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~ 101 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDR 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 34558999999999999999999999999999999865 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhccccccc--CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcch
Q 009588 358 ERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFT--NDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSI 435 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 435 (531)
+++++..+.++.+++.++++.+++.+++++++..++. .|+|+.+.+..|+++..++.++..++....+++++.||++.
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----hcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 009588 436 AANVNLSAFYLAGMPVAIGLGFL----LGIGFCGLWQGLLAAQVCCAGLMLYVVG 486 (531)
Q Consensus 436 ~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~i~~~~~~~~~~ 486 (531)
++++++++. ++++++.+.+... +++|+.|+|+|+.+++.+..++..+++.
T Consensus 182 ~~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 182 PLLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred hHHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999865 6888888877653 4789999999999999998887765554
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.86 E-value=1.2e-19 Score=186.63 Aligned_cols=211 Identities=14% Similarity=0.079 Sum_probs=194.3
Q ss_pred HHHHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009588 276 RECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGAN 355 (531)
Q Consensus 276 ~~~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~ 355 (531)
+..++..|+++++++|.+++.+...+...+|..+++++++ +++++++++.++..+...+..+++.+..|.+++++|++
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~--~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSA--TDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4456789999999999999999999999999999999865 99999999999988888899999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcch
Q 009588 356 RPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSI 435 (531)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 435 (531)
|+++.++..+.++.+.+.++++.+++++++++++..+++.|+++.+.+..++++..++.++..+.....+++++.||++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----hcCCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 009588 436 AANVNLSAFYLAGMPVAIGLGFL----LGIGFCGLWQGLLAAQVCCAGLMLYVVGTTD 489 (531)
Q Consensus 436 ~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~ 489 (531)
+++.++++. ++++++.+.+... +.+|+.|+++++.+++.+..++..++.++++
T Consensus 163 ~~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 163 TMVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999999987 6888888877642 4689999999999999999998887766543
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.85 E-value=1.7e-19 Score=184.54 Aligned_cols=209 Identities=14% Similarity=0.110 Sum_probs=195.1
Q ss_pred HHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 009588 278 CLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRP 357 (531)
Q Consensus 278 ~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 357 (531)
+++..|++++.++|.+++++...+...+|+.+++++. |++++++++++.++..+...+..+++.+..+.+++++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 4467799999999999999999999999999999974 459999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhh
Q 009588 358 ERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAA 437 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 437 (531)
|++++..++++.++++++++.+++.+++++++..+++.|+++.+.+.+++++..++.++..+......++++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 009588 438 NVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTT 488 (531)
Q Consensus 438 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~ 488 (531)
+.++.+. ++++++.+.+...+++|+.|+++++.+++.+..++..+++.++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999987 7899999999887789999999999999999988877666543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=2.6e-17 Score=171.70 Aligned_cols=205 Identities=16% Similarity=0.098 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcch
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKL 137 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 137 (531)
++..|++++.++|..+++....+...+|+.+.+.+|++++++|+.+..+..+....+..+++++..|.++++.|++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45789999999999999999999999999885559999999999999999887445678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhH
Q 009588 138 LSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQ----DPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHP 212 (531)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~ 212 (531)
.++.+++++.+...++++.+++ ..++++++.++.+ ++|..+.+..++++++++.++..+.......+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999998886 8888999887754 5677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHc
Q 009588 213 LTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWAS 264 (531)
Q Consensus 213 ~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 264 (531)
+++.++...++|++++++++.. +|..|+++++.+++.+..++..++.+++
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876 8999999999999999998887776654
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=2.4e-16 Score=150.63 Aligned_cols=272 Identities=17% Similarity=0.223 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchHHHHH
Q 009588 64 LFNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTL 142 (531)
Q Consensus 64 i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 142 (531)
+.|.+.....++++..+.+++...++.| +|++++|.++.+.++.+++......|++++..+.+++...+ +++.+...
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3577888999999999999999999999 99999999999999999886666999999999998887432 34445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009588 143 QRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTI 222 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~~ 222 (531)
...+....+.+++........ ...+.+ +... .+........++.........++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~----~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIA----SFFGNP-SLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444333332221 133322 2211 11222222225778888899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHhcHHHHHHhHhhHHHHHHHHHHH
Q 009588 223 IHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWW 302 (531)
Q Consensus 223 ~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~~~~~~~~~~ 302 (531)
...++..+++.. +.+..+..++..++.++..++..++.+++.+ .++. ..+++..|++++++.|..++.+...+.
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFS---FFSKKFFKEILRFGLPLFLSSLLSWLY 224 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cccc---ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777664 3458899999999999998888777765442 1111 334788999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009588 303 YEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNEL 352 (531)
Q Consensus 303 ~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~ 352 (531)
...|.++++.+. |++++|.|+++.++......+..++.++..|.+++.+
T Consensus 225 ~~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 225 SQIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999998 7999999999999999999999999999999999863
No 24
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.77 E-value=7.7e-16 Score=156.70 Aligned_cols=207 Identities=18% Similarity=0.169 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcch
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKL 137 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 137 (531)
++..|++++...|.+++.....+...+|+.+.+.+++..+++++.+..+.+++...+..++++...|.+|+...+||.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 35689999999999999999999999999999999999999999999999998678888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhH
Q 009588 138 LSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLH----QDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHP 212 (531)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~ 212 (531)
.++.+++++...+.+.+++++. ..+++|++.++. .+.|..+....+++++++++++..+...+...+.+.+|+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999986 899999998764 36777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCC
Q 009588 213 LTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGL 266 (531)
Q Consensus 213 ~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~ 266 (531)
++..++++.++|++++.++... +|..|.++++.++..+..++.+++++|+..
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998887 899999999999999999998777766543
No 25
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.74 E-value=7.4e-16 Score=152.50 Aligned_cols=194 Identities=20% Similarity=0.202 Sum_probs=177.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 009588 291 PSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFV 370 (531)
Q Consensus 291 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 370 (531)
|.+++++...+...+++++++++++ +++++|+.+.++..+...+..+++++..|.++++.|++|+|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGP--VDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 6788899999999999999999865 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHH
Q 009588 371 AAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMP 450 (531)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 450 (531)
.+.++++.+++++++++++..+++.|++..+.+..++++++++.++.+++....+++++.||.+...+.++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999877888889999999999999999999999999999999999999999887 57777
Q ss_pred HHHHHHH-Hhc-CCchhHHHHHHHHHHHHHHHHHHHHhc
Q 009588 451 VAIGLGF-LLG-IGFCGLWQGLLAAQVCCAGLMLYVVGT 487 (531)
Q Consensus 451 ~~~~l~~-~~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~ 487 (531)
..+.+.. ..+ +|+.|+++++.+++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777765 445 679999999999999998888766654
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.74 E-value=1.7e-14 Score=144.56 Aligned_cols=207 Identities=15% Similarity=0.093 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchH
Q 009588 59 TESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLL 138 (531)
Q Consensus 59 ~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 138 (531)
...|++.+...|..++..++++..++|+.+.+.+.+...+.+..+..+.++..-.+..++++.+.|.+|+...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 57999999999999999999999999999999999999999999999999997799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHH
Q 009588 139 SLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLH----QDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPL 213 (531)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~ 213 (531)
++..+.++.+.++..++.++. .++++|++..+. .+++........++.++++.++..+..+....+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999986 899999998763 356677778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 009588 214 TLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLH 267 (531)
Q Consensus 214 ~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~ 267 (531)
+++.+++.++|+++++.+... +|..|.+.++.++.+++..+.++..+++...
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~ 440 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVY 440 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999877776 8888999999999999998887777666543
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=1.4e-17 Score=145.83 Aligned_cols=162 Identities=23% Similarity=0.307 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 009588 291 PSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFV 370 (531)
Q Consensus 291 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 370 (531)
|.+++++...+.+.+++.+++++++ +++++++++.++..+...+..+++++..+.+++++|++|++++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~--~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGP--EALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTT--CCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 7889999999999999999999965 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHH
Q 009588 371 AAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMP 450 (531)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 450 (531)
...++++.+++++++++++..+|++|+++.+.+..++++..+..++..+.....+++++.||++..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred HHHH
Q 009588 451 VAIG 454 (531)
Q Consensus 451 ~~~~ 454 (531)
+.|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.70 E-value=2.9e-15 Score=155.83 Aligned_cols=202 Identities=16% Similarity=0.204 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChH---------HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGH-LGDL---------ELAGG-SLAIAFANITGYSVLSGLALGMEPLC 126 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~---------~~~~~-~~a~~i~~~~~~~~~~gl~~~~~~~~ 126 (531)
++..|++++.++|.+++++...+...+|+.++++ +++. .+|.+ +.+.++..+. ..+..+++++..|.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999988 5322 23333 3455667776 677889999999999
Q ss_pred HhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 009588 127 SQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLR 205 (531)
Q Consensus 127 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 205 (531)
+++.|++|+++.++.+++.+.+...++++..+. ..+.++++.++..++ .+..++++++++.++..+.....+.++
T Consensus 300 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~ 375 (488)
T TIGR02900 300 SEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQ 375 (488)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988876 788888888776443 356789999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHc
Q 009588 206 AQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWAS 264 (531)
Q Consensus 206 a~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 264 (531)
+.||++..++.+++..++|++++++++....+|+.|+++++++++++..++..++.+|.
T Consensus 376 ~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 376 GLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998733348999999999999999998887766543
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.69 E-value=2.4e-17 Score=144.31 Aligned_cols=160 Identities=27% Similarity=0.368 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 009588 70 PIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFL 149 (531)
Q Consensus 70 p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 149 (531)
|.++++++..+...+|+.+++++|++++++++++..+..+. ..+..|++++..+.++|++|++|++++++.++.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHHHHH
Q 009588 150 LFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGT-IIHLPI 227 (531)
Q Consensus 150 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~-~~~i~~ 227 (531)
.++++++.++ ..+.+++..+++.++|..+.+.+|+++..++.++..+.....+++++.||++..++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999987 88888999999999999999999999999999999999999999999999999999999998 899998
Q ss_pred HHH
Q 009588 228 NFL 230 (531)
Q Consensus 228 ~~~ 230 (531)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.68 E-value=1.6e-13 Score=142.77 Aligned_cols=200 Identities=16% Similarity=0.139 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcc
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPK 136 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 136 (531)
++..|++++++.|.+.+++...+...+|+.++++ +|++++|.|+.+.++.++....+...++....|.+++. ++|.+
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4678999999999999999999999999999999 99999999999999998864556666778888999886 67888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 009588 137 LLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTL 215 (531)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~ 215 (531)
+.++.+++.+.+...+++++.+. ..+++|++.++.+++ +..+...++++++...+..+.......+++.||.+....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 99999999999999999998876 788889888775433 567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 009588 216 ASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWA 263 (531)
Q Consensus 216 ~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 263 (531)
.+++..+++++..+++... +|+.|+++++++++.+...+..++..+
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888777666654 799999999999999988887666644
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.65 E-value=4.6e-13 Score=126.25 Aligned_cols=247 Identities=19% Similarity=0.253 Sum_probs=180.4
Q ss_pred HHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 009588 80 SRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISL 158 (531)
Q Consensus 80 l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (531)
..+++...+++| +|++++|.|+....+..+.......|+++.... ..++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999 999999999999999998855557777776655 22355666666666665554444444333
Q ss_pred HHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 009588 159 LWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLG 238 (531)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g 238 (531)
+ ...+..++ .+++ ...++....+..++........+.+++.+|.+......+...++..++...+.. .+.+
T Consensus 77 ~---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred H---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 2 11111223 2332 234456677778888999999999999999999999999998888555554444 3358
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 009588 239 VLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKS 318 (531)
Q Consensus 239 ~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 318 (531)
..+..++..++.++..++.....+ + +.+.. ++.+..| .++++.|..+..+..+.....|.++++.+. |++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLR-R-KLRLS------FKFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-c-ccCCC------chhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 888899988998888776644222 1 11111 1222234 799999999999999999999999999955 579
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 009588 319 TVASMGILIQTTSLIY-VFPSSLGFAVSTRVGN 350 (531)
Q Consensus 319 ~~a~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~ 350 (531)
++|.|+++.++..... .+..++++...|.+++
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888 9999999999999986
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.64 E-value=6.9e-14 Score=142.08 Aligned_cols=198 Identities=11% Similarity=0.048 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcc
Q 009588 58 ITESKSLFNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPK 136 (531)
Q Consensus 58 ~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 136 (531)
++..|++++++.|..++++...+....|+.++++ +|++++|.|+.+.++.+.+...+..+++++..|.++++ +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 5678999999999999999999999999999986 99999999999999987543688999999999999995 5678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 009588 137 LLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTL 215 (531)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~ 215 (531)
+.++.+++.+.....++++..++ ++++++++.++.+++ ++.+.+++++++++..+..........+.+.++.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 365 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL 365 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988888888776 788899998886543 444677888988888888887777777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHH
Q 009588 216 ASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIW 262 (531)
Q Consensus 216 ~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~ 262 (531)
..+...++++++++++++. +|..|+++++.+++++..++..+...
T Consensus 366 ~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 366 AEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999987 89999999999999999987765544
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.57 E-value=8.7e-13 Score=136.82 Aligned_cols=187 Identities=28% Similarity=0.325 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCc
Q 009588 57 IITESKSLFNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRP 135 (531)
Q Consensus 57 ~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 135 (531)
.++..|++++.++|..++.+...+.+.+|+.++++ +|++++|.|+.+..+.... ..+...++....|.+++...++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 36789999999999999999999999999999999 9999999999888888887 788999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHH
Q 009588 136 KLLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLT 214 (531)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~ 214 (531)
++.++..++++.+...++++..+. ..+++|++..+.+++ +..+...+.++++..++..+.......+++.|+.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999987 888889888775544 22367788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHH
Q 009588 215 LASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALS 249 (531)
Q Consensus 215 ~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~ 249 (531)
..+.++.++|++++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999987 8899999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.38 E-value=1.3e-09 Score=111.83 Aligned_cols=421 Identities=13% Similarity=0.004 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHhhhcCCCcchHHHHH
Q 009588 65 FNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANI-TGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTL 142 (531)
Q Consensus 65 ~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~-~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 142 (531)
.+.+.-.++.+++..+.+++-+.++-| ++++.+|..++-..+..- +.+..=-++..+..+.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 456677889999999999998888888 999999988654443322 112233344444433222221111222333333
Q ss_pred HHHHHHHHHHHHHHHHHHH--hHHH----HHHHcCC-CHH---HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHcC
Q 009588 143 QRSVIFLLFSSIPISLLWL--NMSK----ILLYLHQ-DPN---ITRIAHSYLLFCLPDLLTNSFVHPI----RIYLRAQG 208 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~-~~~---~~~~~~~~l~i~~~~~~~~~~~~~~----~~~l~a~~ 208 (531)
+....+..+.+++++.+.+ ...| ...+... .++ ..+.....+.+..++.....+...+ +..+.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 3323333333332222211 0101 0111111 111 1111222233344444443333333 44444444
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhh-cCccc-----ch-hHHHHHHHHHHHHHHHHHHHHHcCC-CccccC----CCCH
Q 009588 209 ITHPLTLASLAGTIIHLPINFLLVTH-LRLGV-----LG-VAAAAALSNLCVLFSLVVYIWASGL-HEPTWT----KPTR 276 (531)
Q Consensus 209 ~~~~~~~~~i~~~~~~i~~~~~li~~-~~~g~-----~g-~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~ 276 (531)
|.+.-........+.+..+.+..... .+++. .+ +.++..++++...+........... ....+. +...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 55555555555555554444333221 11111 11 2345555665554332221111111 111111 1101
Q ss_pred ---HHHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 009588 277 ---ECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGL--LVDPKSTVASMGILIQTTSL-IYVFPSSLGFAVSTRVGN 350 (531)
Q Consensus 277 ---~~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~a~~~~~~~i~~~-~~~~~~~l~~~~~p~~~~ 350 (531)
.....-+++++.....+...+.-++....|.+++.. +. ..++-|.|++++++.++ ...+..++-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~-t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLL-TFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccC-CHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 011124788999999999999999999999999998 77 48999999999999888 455568888888888888
Q ss_pred HhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009588 351 ELGANRP---------ERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQT 421 (531)
Q Consensus 351 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 421 (531)
...+++. ++..+.....++....+++.+..+....++.++.++.++......+...+++++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 8765433 4466677777888888888777777778888888886644333457889999999999999999
Q ss_pred HHHHHhhhcCCcchhhHHHHHHH--HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 009588 422 VGCGVLRGSARPSIAANVNLSAF--YLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGT 487 (531)
Q Consensus 422 ~~~~~l~~~g~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 487 (531)
+...+.++..+.+.....+-.-. -++.+..++.+... ++|..|..+|..+.+.++.+....++++
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877665433211 14556666766664 6899999999999999999998887755
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=3.7e-08 Score=94.46 Aligned_cols=417 Identities=14% Similarity=0.010 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcc-
Q 009588 59 TESKSLFNLAFPIALTALIIYSRSILSMLFLGH-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPK- 136 (531)
Q Consensus 59 ~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~- 136 (531)
+...+-.+.+...+..+++..+.+++-+.++-| ++++.+|..++-..+.+- ...-++--..+......|..+.|
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~s----TiLFlsREair~A~l~~gs~~~d~ 80 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQS----TILFLSREAIRLAELRIGSEPADT 80 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHH----HHHHhhHHHHHHHhccCCCCCCcc
Confidence 456677888888999999999999988877777 999999998876555442 22223444444444455544433
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC-CHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhH
Q 009588 137 --LLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQ-DPN-ITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHP 212 (531)
Q Consensus 137 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~ 212 (531)
+..+..+.+.-+..+..+.+.-+++ .+... ++. ..+.-...+.+..++.....+...+.-..|..-+.+.
T Consensus 81 ~te~~n~~wlS~~L~~~i~~~~i~~wl------~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~ 154 (530)
T KOG2864|consen 81 WTEFINLLWLSVPLQTAINVACIYFWL------GFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQL 154 (530)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHH------HHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4444444444444444443332211 11111 111 1111122223333344444444444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHH-Hhhc-CcccchhHHHHHHHHHHHHHHHH-HHHHHcCCCcc--cc-------CCC-CH-HH
Q 009588 213 LTLASLAGTIIHLPINFLL-VTHL-RLGVLGVAAAAALSNLCVLFSLV-VYIWASGLHEP--TW-------TKP-TR-EC 278 (531)
Q Consensus 213 ~~~~~i~~~~~~i~~~~~l-i~~~-~~g~~g~a~a~~i~~~~~~~~~~-~~~~~~~~~~~--~~-------~~~-~~-~~ 278 (531)
-.+..-+..++.-+..+.. +.+. .+++.--|+|.........+... .|++.++..+. .+ .+. .. ..
T Consensus 155 ~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~ 234 (530)
T KOG2864|consen 155 RAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERG 234 (530)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcc
Confidence 5555555566553333333 3321 23344444444444333333122 23332331100 00 000 00 00
Q ss_pred HhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Q 009588 279 LTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVD-PKSTVASMGILIQTTSL-IYVFPSSLGFAVSTRVGNELGANR 356 (531)
Q Consensus 279 ~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~~i~~~-~~~~~~~l~~~~~p~~~~~~g~~~ 356 (531)
...-++..+.-.......+..++....+..+++.... .-.+-|.|.++++..++ ..++..++-...-...++...+++
T Consensus 235 ~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~ 314 (530)
T KOG2864|consen 235 IFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDN 314 (530)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccc
Confidence 1122456666667777777777777777777664322 23688899999998877 455668888888888888888777
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCc
Q 009588 357 PERAKL---SAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARP 433 (531)
Q Consensus 357 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 433 (531)
.|+.++ .....++....+++...++.....+.++.++++..-....+...++++++..++.+++.+..++..+.++.
T Consensus 315 qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~ 394 (530)
T KOG2864|consen 315 QENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATS 394 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccH
Confidence 666665 44555666666666666666677777888886644333456688999999999999999999999998877
Q ss_pred chhhHH---HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 009588 434 SIAANV---NLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTT 488 (531)
Q Consensus 434 ~~~~~~---~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~ 488 (531)
+..-.. .++.. ++.+.+.+++... +|..|...|..+.+.++.+...+++++.
T Consensus 395 ~qi~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 395 RQIDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665542 22222 4567778888776 8899999999999999988887766553
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.18 E-value=1.7e-09 Score=109.64 Aligned_cols=207 Identities=17% Similarity=0.104 Sum_probs=189.7
Q ss_pred HhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Q 009588 279 LTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSL-IYVFPSSLGFAVSTRVGNELGANRP 357 (531)
Q Consensus 279 ~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~-~~~~~~~l~~~~~p~~~~~~g~~~~ 357 (531)
+...|++.+++.|..+....+.....++..+.+++++ .++++.++++...+. -+-+..++..+.-|.+++++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~--leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGN--LELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccc--hHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 6788999999999999999999999999999999976 799999999988776 6677799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhh
Q 009588 358 ERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAA 437 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 437 (531)
+.......++........++.+.. +.+.+++...+..|+++...+..+.+++....+.......+...+|+.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999998888888888665 5556999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 009588 438 NVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGTTD 489 (531)
Q Consensus 438 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~ 489 (531)
++..+.. .+++++.+++.+..++|..|++++..+++.+.......+.....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~ 231 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG 231 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC
Confidence 9999987 79999999999999999999999999999999888877665543
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.83 E-value=1.7e-05 Score=73.33 Aligned_cols=262 Identities=13% Similarity=0.027 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCc
Q 009588 59 TESKSLFNLAFPIALTALIIYSRSILSMLFLGH-L-GD-LELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRP 135 (531)
Q Consensus 59 ~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-l-g~-~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 135 (531)
...+++.++-.|+.++.++..+...+-+.-++| - .+ +.+++|+++..+.-++ ......+.+....+ +++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~-----V~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVF-----VNSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHH-----hcchh
Confidence 468899999999999999999999888888877 2 22 4599999999988877 56555555544433 33322
Q ss_pred chHHHHHHHHHHHHHHHHHHH-HHH-HHhH-HHHH-HHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChh
Q 009588 136 KLLSLTLQRSVIFLLFSSIPI-SLL-WLNM-SKIL-LYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITH 211 (531)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~ 211 (531)
+ ++.....+.....+..++ .++ +--. ..++ ..++.++++.+.++..+.++.+.-++.++...+++++.-.++..
T Consensus 82 s--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 82 S--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 2 333332222222222211 122 2111 2223 35578999999999999999999999999999999998777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccc-chhH---HHHHHHHHHH-HHHHHHHHHHcCCCccccCCCCHHHHhcHHHHH
Q 009588 212 PLTLASLAGTIIHLPINFLLVTHLRLGV-LGVA---AAAALSNLCV-LFSLVVYIWASGLHEPTWTKPTRECLTGWKPLL 286 (531)
Q Consensus 212 ~~~~~~i~~~~~~i~~~~~li~~~~~g~-~g~a---~a~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ 286 (531)
.....++...+..+++..+++.. +... ..+. .+...+..+- ..+.+.|+..-....+...+.++.+...+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 77777766666666666555532 1111 1111 1222222211 112222221112222222222234556789999
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHhcCCCch----HHHHHHHHHHHH
Q 009588 287 KLAAPSCVSVCLEWWWYEIMIVLCGLLVDPK----STVASMGILIQT 329 (531)
Q Consensus 287 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~a~~~~~~~i 329 (531)
++.+|++.......++-.+.+.++++...|. ++++...+.+.+
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypv 285 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPV 285 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCC
Confidence 9999999999999999999999999843343 556665554444
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.50 E-value=1.5e-05 Score=68.04 Aligned_cols=80 Identities=23% Similarity=0.389 Sum_probs=74.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 009588 184 LLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWA 263 (531)
Q Consensus 184 l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 263 (531)
+++++++.++..+.....+.+++.||++..+..++++.++|+++++++++. +|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999999999876 999999999999999999888777766
Q ss_pred cC
Q 009588 264 SG 265 (531)
Q Consensus 264 ~~ 265 (531)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 54
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.44 E-value=4e-05 Score=79.24 Aligned_cols=203 Identities=13% Similarity=0.095 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCc--
Q 009588 61 SKSLFNLAFPIALTALIIYSRSILSMLFLGH---LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRP-- 135 (531)
Q Consensus 61 ~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~---lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~-- 135 (531)
-++.++.+...+.+.+...+.+--|+.++.. .+.++.|.|+++.++-+++.-.+..-+.-+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3678888999999999999999999999988 56779999999999999987788888888888888888765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Q 009588 136 -------KLLSLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQ 207 (531)
Q Consensus 136 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~ 207 (531)
++..+.+...+.+...+|+++..+ ...++.++.+++++.=....+...+++.+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 345667777888888888877766 666677777765432222334667899999999999999999999998
Q ss_pred CChhHH---HHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHc
Q 009588 208 GITHPL---TLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWAS 264 (531)
Q Consensus 208 ~~~~~~---~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 264 (531)
...+.. ....++..++-+..+++++.. ++|..|..+|+.+...+..+....++++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877544 444455566777788888875 79999999999999999998887777654
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.19 E-value=0.00025 Score=67.30 Aligned_cols=187 Identities=17% Similarity=0.131 Sum_probs=116.3
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 009588 287 KLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVF-PSSLGFAVSTRVGNELGANRPERAKLSAV 365 (531)
Q Consensus 287 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~-~~~l~~~~~p~~~~~~g~~~~~~~~~~~~ 365 (531)
|-+......+....+...+...+..+.. |+++.|.|+....+..+...+ ..|+.++..-..++...+ .+..++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 4455556666666666666666666665 579999999999999887776 588888888888776433 233344444
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHH
Q 009588 366 VAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFY 445 (531)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 445 (531)
.......+..+.......+.. .+.. ++. ...+........++.........++++.++.+.....++...
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFGN-PSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcCC-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 343333333333222222222 3333 321 122222222222577888889999999999998888888876
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 009588 446 LAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVGT 487 (531)
Q Consensus 446 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 487 (531)
+..+...+.+... ..+..+..++..++..+..++.....+|
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333 2348888999999988887777766654
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.0023 Score=62.42 Aligned_cols=201 Identities=9% Similarity=0.066 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchH
Q 009588 62 KSLFNLAFPIALTALIIYSRSILSMLFLG--H-LGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLL 138 (531)
Q Consensus 62 ~~i~~~~~p~~~~~~~~~l~~~~~~~~i~--~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 138 (531)
++..+......-+.+...+.+--|.+++. . ++-++-|.|..+..+-+++.-.+..-+.-....+.+|...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 34556666667777888888888888888 4 67778999999988888877777777888888888887776665555
Q ss_pred H---HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHH-
Q 009588 139 S---LTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPL- 213 (531)
Q Consensus 139 ~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~- 213 (531)
+ .++...+.+...+|+++..+ ...+.+++.+.+++.=....+...+++.+..+|+.+++.+..++..+....+..
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 4 45556667777777666655 555666667665543223334567899999999999999999999998866533
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHc
Q 009588 214 --TLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWAS 264 (531)
Q Consensus 214 --~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 264 (531)
.....+..+.-++++++++-. +|..|..+|..+...+..+....++++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888899999988 6778888888888888777765555543
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=98.03 E-value=0.014 Score=55.59 Aligned_cols=342 Identities=11% Similarity=0.034 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHH
Q 009588 105 AFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYL 184 (531)
Q Consensus 105 ~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (531)
.....+...+..|++...++.+|...=+||.+++..-+--...+....+.++..+.+ ....+.... ..
T Consensus 67 ~Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si~---yk-- 134 (467)
T COG4267 67 TYCFIFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSIV---YK-- 134 (467)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhHH---HH--
Confidence 344444567888999999999999988888887766665555555444444442211 111111111 11
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHHc
Q 009588 185 LFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVYIWAS 264 (531)
Q Consensus 185 ~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 264 (531)
.............=+...++.+.++.+.....-.++.++.+.+..++-. .+..|..++..++..+.......++.+.
T Consensus 135 ~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~ 211 (467)
T COG4267 135 ILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 1222233334444445677889999999988888888888888776655 5899999999999999888877777665
Q ss_pred CCCccccCCCCHHHHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH------HHHHHHHHHHHHHHHH
Q 009588 265 GLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVAS------MGILIQTTSLIYVFPS 338 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~------~~~~~~i~~~~~~~~~ 338 (531)
-+.+++ ..++ .....+--....+......++-.+|+++.-..++|.+..+. |.+..-.......|..
T Consensus 212 fk~~~~-i~Fd------FL~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~ 284 (467)
T COG4267 212 FKSSRR-IGFD------FLLYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSM 284 (467)
T ss_pred cccccc-ccee------hhhhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchh
Confidence 433221 2221 11122222334455555666666776665554432222221 3333222222222222
Q ss_pred H-----HHHHHHHHHHHHh----c-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHH
Q 009588 339 S-----LGFAVSTRVGNEL----G-------ANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRL 402 (531)
Q Consensus 339 ~-----l~~~~~p~~~~~~----g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 402 (531)
. +-+...+.--+.+ + +++.++.....++.+.-.+-+-...++.++++++.+...+.-++ .
T Consensus 285 vvF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~ 360 (467)
T COG4267 285 VVFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----Y 360 (467)
T ss_pred heeeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----H
Confidence 2 2233333322221 1 12344555566666666777777888889999999988886643 3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHH-hcCCchhHHHHHHHH
Q 009588 403 TSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFL-LGIGFCGLWQGLLAA 473 (531)
Q Consensus 403 ~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~g~~G~~~a~~~~ 473 (531)
..+.+++-.++..++......-++..-..+-+..+..+..-. +.+..+.+..... +++--.|...|..+.
T Consensus 361 ~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~lgp~~~g~gff~a~fl~ 431 (467)
T COG4267 361 YLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLELGPGYYGVGFFLASFLY 431 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHhCccceehHHHHHHHHH
Confidence 567778888888887777777777777777777777666543 4555565554432 333344444444444
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.92 E-value=0.0027 Score=59.43 Aligned_cols=165 Identities=12% Similarity=0.188 Sum_probs=107.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009588 305 IMIVLCGLLVDPKSTVASMGILIQTTSLIYVFP-SSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFAS 383 (531)
Q Consensus 305 ~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~-~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (531)
+...++++.. |+++.|.|+....+..+...+. .++.+...- ..+++.++.++..+......++..+...++..
T Consensus 6 ~~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PF13440_consen 6 LFLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAI 79 (251)
T ss_pred HHHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555 5799999999999998877764 445444432 23466667777776666555555544443322
Q ss_pred hchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 009588 384 GMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGF 463 (531)
Q Consensus 384 ~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~ 463 (531)
.... .+ ++++ ...++.+..+..++..........+++.+|.+........... ..+.....+.. ...+.
T Consensus 80 ~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~ 148 (251)
T PF13440_consen 80 LIAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSL-LRLLLLVLLLY-LGLNL 148 (251)
T ss_pred HHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHHH-HHhhH
Confidence 2222 23 3332 3445667777788889999999999999999999998888763 33333333322 22378
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 009588 464 CGLWQGLLAAQVCCAGLMLYVVG 486 (531)
Q Consensus 464 ~G~~~a~~~~~~i~~~~~~~~~~ 486 (531)
.+..++..++..+..++.....+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88889988888887776665443
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.88 E-value=0.0042 Score=57.93 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=110.2
Q ss_pred HHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009588 278 CLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPK-STVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANR 356 (531)
Q Consensus 278 ~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~ 356 (531)
....+++++++-.|+.++.....+.-.+.+.-+++-.+.+ +.+|+|+++..+.-++..+...+-+.....+. ++
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SK 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----ch
Confidence 4567889999999999999999999998887777633223 56999999999999999988888887776654 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhchhc-ccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhc
Q 009588 357 PERAKLSAVVAVFVAAIMGLSATVF-----ASGMRDR-WGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGS 430 (531)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 430 (531)
.++.+.. ....+.++..+++ .--++.+ +.+++.-|+++.+.+...+.++.+..+++++.....+++.=.
T Consensus 81 rsrr~~v-----l~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~ 155 (345)
T PF07260_consen 81 RSRRKAV-----LCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKH 155 (345)
T ss_pred hhhHHHH-----HHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 2222222 2222333333222 2222332 334456689999999999999999999999999999888755
Q ss_pred CCcchhhHHHHHH
Q 009588 431 ARPSIAANVNLSA 443 (531)
Q Consensus 431 g~~~~~~~~~~~~ 443 (531)
+++......++..
T Consensus 156 r~s~iV~~aSI~~ 168 (345)
T PF07260_consen 156 RHSWIVGSASIAD 168 (345)
T ss_pred cceeEeehHHHHH
Confidence 5665555555554
No 45
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.86 E-value=9e-05 Score=63.15 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=71.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 009588 407 LPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVG 486 (531)
Q Consensus 407 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~ 486 (531)
+++++++.++.+++....+++++.||+|..++.++++. ++++++.+.+. +.+|..|+++++.+++....++..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999987 78888888874 4499999999999999999999888777
Q ss_pred cC
Q 009588 487 TT 488 (531)
Q Consensus 487 ~~ 488 (531)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 74
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=81.21 E-value=58 Score=31.99 Aligned_cols=135 Identities=8% Similarity=-0.003 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHH
Q 009588 335 VFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCE 414 (531)
Q Consensus 335 ~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 414 (531)
.++.+++...+-.+|.-.=++|.+++...+.-...+....+..++.+++ ...++.+ ..+-...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~~~~~s-----i~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF--------FVNNQYS-----IVYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh--------hhcCchh-----HHHHHHHHHHH
Confidence 3446666666666776666677777766666555555544444432111 1122221 22223344555
Q ss_pred hhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 009588 415 LGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVG 486 (531)
Q Consensus 415 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~ 486 (531)
+..+...+....+.+++|.+.....-+++. ++.+.+.+.+-. .+..|.-++..++..+..++...++.
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Il 209 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYIL 209 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 667777888889999999998888887776 566666665544 58999999999998887776655443
No 47
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=80.15 E-value=63 Score=31.72 Aligned_cols=28 Identities=4% Similarity=-0.187 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009588 357 PERAKLSAVVAVFVAAIMGLSATVFASG 384 (531)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
.++..+..++.++......+|......+
T Consensus 118 ~~~~~~~~r~~l~~~~~~~~pl~~~~~~ 145 (340)
T PF12794_consen 118 PKERVQRLRRQLRWLIWVLVPLLFISIF 145 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666665444443
No 48
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=75.75 E-value=69 Score=31.95 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009588 466 LWQGLLAAQVCCAGLMLYVV 485 (531)
Q Consensus 466 ~~~a~~~~~~i~~~~~~~~~ 485 (531)
...+....+++..+.....+
T Consensus 146 ~~a~~aaDnv~~~~~~~~l~ 165 (378)
T PF05684_consen 146 FAAALAADNVVMALWFAFLL 165 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544433
No 49
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=70.96 E-value=2.1e+02 Score=33.38 Aligned_cols=28 Identities=14% Similarity=-0.018 Sum_probs=14.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 009588 199 PIRIYLRAQGITHPLTLASLAGTIIHLP 226 (531)
Q Consensus 199 ~~~~~l~a~~~~~~~~~~~i~~~~~~i~ 226 (531)
.....+...++.+...+.+....+..++
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~i 159 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILL 159 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHH
Confidence 3445555555566665555554444433
No 50
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=60.06 E-value=1.5e+02 Score=27.82 Aligned_cols=34 Identities=9% Similarity=-0.130 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 009588 333 IYVFPSSLGFAVSTRVGNELGANRPERAKLSAVV 366 (531)
Q Consensus 333 ~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~ 366 (531)
+..+...+.....+..-+...++|++++++.-..
T Consensus 110 l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~ 143 (267)
T PRK09757 110 VILFFYSAFSLFMTKADKCAKEADTAAFSRLNWT 143 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 4455566677777888888889999888765444
No 51
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=56.59 E-value=74 Score=23.70 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 009588 338 SSLGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGL 376 (531)
Q Consensus 338 ~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (531)
.-++......+.+.+.+||++++++.-+++.+++.+-.+
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 334444456677888899999999999998888765443
No 52
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=48.89 E-value=3.3e+02 Score=28.35 Aligned_cols=63 Identities=6% Similarity=-0.027 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhc----CcccchhHHHHHHHHHHHHHHHH
Q 009588 196 FVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLLVTHL----RLGVLGVAAAAALSNLCVLFSLV 258 (531)
Q Consensus 196 ~~~~~~~~l~a~~~~~~~~~~~i~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~ 258 (531)
...+...+++-.++.....+......+.|+....+-.... +.+..|--|..++.-+++....+
T Consensus 155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGI 221 (495)
T ss_pred HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHh
Confidence 3445677777777777777776655566655554433311 13455555666666655555543
No 53
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=47.34 E-value=1.3e+02 Score=29.86 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=6.1
Q ss_pred CCchhHHHHHHHH
Q 009588 461 IGFCGLWQGLLAA 473 (531)
Q Consensus 461 ~g~~G~~~a~~~~ 473 (531)
+|-.|..+.....
T Consensus 118 ~g~~~~~~~~~~~ 130 (385)
T PF03547_consen 118 FGERGVAYAIIFD 130 (385)
T ss_pred hcchhhhhehHHH
Confidence 3555555444333
No 54
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=43.98 E-value=20 Score=26.47 Aligned_cols=25 Identities=4% Similarity=-0.129 Sum_probs=6.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcc
Q 009588 479 GLMLYVVGTTDWDFQAKRAQILTYT 503 (531)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (531)
.+.+..+++.+..++.++..++..+
T Consensus 24 ~iv~ieYrk~~rqrkId~li~RIre 48 (81)
T PF00558_consen 24 TIVYIEYRKIKRQRKIDRLIERIRE 48 (81)
T ss_dssp HHH------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 3333444444455555555554444
No 55
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=42.18 E-value=4.3e+02 Score=27.75 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ChHHHHHHHHHHHHHHHH
Q 009588 64 LFNLAFPIALTALIIYSRSILSMLFLGHL--GDLELAGGSLAIAFANIT 110 (531)
Q Consensus 64 i~~~~~p~~~~~~~~~l~~~~~~~~i~~l--g~~~~~~~~~a~~i~~~~ 110 (531)
+..+..-..++++...+....-.+++..+ ++..+|.+..+..+..++
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~L 60 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILL 60 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44444556677777777777777777663 333666666665555543
No 56
>PRK01637 hypothetical protein; Reviewed
Probab=40.76 E-value=3.3e+02 Score=25.91 Aligned_cols=10 Identities=10% Similarity=0.146 Sum_probs=4.4
Q ss_pred HHHHHhcCCC
Q 009588 347 RVGNELGANR 356 (531)
Q Consensus 347 ~~~~~~g~~~ 356 (531)
-+.+.++.++
T Consensus 115 a~N~i~~~~~ 124 (286)
T PRK01637 115 ALNTIWRSKR 124 (286)
T ss_pred HHHHHhCCCC
Confidence 3344455443
No 57
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=38.84 E-value=3.4e+02 Score=25.54 Aligned_cols=36 Identities=6% Similarity=0.079 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 009588 331 SLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVV 366 (531)
Q Consensus 331 ~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~ 366 (531)
+.+..+...+........-++..++|++++++.-..
T Consensus 107 ~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~ 142 (265)
T TIGR00822 107 QVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVT 142 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 334455566677777778888889999988765443
No 58
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=37.71 E-value=93 Score=26.67 Aligned_cols=52 Identities=8% Similarity=-0.051 Sum_probs=30.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 009588 432 RPSIAANVNLSAFYLAGMPVAIGLGFLLGIGFCGLWQGLLAAQVCCAGLMLYVVG 486 (531)
Q Consensus 432 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~ 486 (531)
++....+.+.. ++...-.|++..++.+.+..-++-..+...+...+...-.+
T Consensus 16 k~~alfY~nA~---ivS~vPi~LF~~Ih~m~~~~~~I~f~i~t~~sayll~fAYk 67 (170)
T PF07074_consen 16 KSSALFYGNAL---IVSAVPIWLFWRIHQMDLYDSLIVFVIVTLVSAYLLAFAYK 67 (170)
T ss_pred ccceehhhHHH---HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 23444456777777788887777777776666655554433
No 59
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=36.49 E-value=1.4e+02 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=19.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHc
Q 009588 238 GVLGVAAAAALSNLCVLFSLVVYIWAS 264 (531)
Q Consensus 238 g~~g~a~a~~i~~~~~~~~~~~~~~~~ 264 (531)
++.|-..++.+++++..++...|.++-
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 444666778888888888777776543
No 60
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=34.05 E-value=4.5e+02 Score=25.59 Aligned_cols=195 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchHHHHHHHHHHHHHH
Q 009588 72 ALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLLSLTLQRSVIFLLF 151 (531)
Q Consensus 72 ~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 151 (531)
.++.+++.+..-....+.-...+.++....++-++.-+++.-+..|. .++.+.+. .+..|...+.+...+--..+
T Consensus 147 a~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~---lTR~i~~k--~kg~~~~~~~f~p~ispi~l 221 (342)
T COG0798 147 AFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGV---LTRYILIK--KKGREWYESRFLPKISPIAL 221 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--hccchHHHHHHHhhcChHHH
Q ss_pred HHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 009588 152 SSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGTIIHLPINFLL 231 (531)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~~~~i~~~~~l 231 (531)
.++..+++..|+..-=...+.+.++...+.+++.......+..... ...+.-.-+-..+...+..++-.-+......
T Consensus 222 igLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~~~~i~~~i---~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi 298 (342)
T COG0798 222 IGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLLMFFISYFI---AKALGLPYEDAAALVFTGASNNFELAIAVAI 298 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCChhhhhceeeeeccccHHHHHHHHH
Q ss_pred HhhcCcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCH
Q 009588 232 VTHLRLGVLGVAAAAALSNLCVLFSLVVYIWASGLHEPTWTKPTR 276 (531)
Q Consensus 232 i~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (531)
... -.-.|+|.+++++.++...++..+.+--.+.++.+.+-++
T Consensus 299 ~lf--G~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~~~~~~ 341 (342)
T COG0798 299 ALF--GLTSGAALATVVGPLVEVPVMLGLVKVALRIRKKYFKNER 341 (342)
T ss_pred Hhc--CccccchhhhhccchhhHHHHHHHHHHHHHHhHhhcccCC
No 61
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=30.43 E-value=5.8e+02 Score=26.06 Aligned_cols=243 Identities=9% Similarity=-0.069 Sum_probs=0.0
Q ss_pred HHHHcCCCccccCCCCHHHHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009588 260 YIWASGLHEPTWTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSS 339 (531)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~ 339 (531)
++...++...+|.+. +.++...|..++.-....+......+...........+. ++.+.-.....+....+....+
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~---~~~~~s~~~~g~~~s~~~~~~~ 78 (467)
T PRK09556 3 FLNQVRKPTLDLPLE-VQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMI---STYGLSTTELGMIGLGFSITYG 78 (467)
T ss_pred cccccCCCccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHH---HhcCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhH
Q 009588 340 LGFAVSTRVGNELGANRPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCP 419 (531)
Q Consensus 340 l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~ 419 (531)
+++.....++..+| .|+..-.++....+..+..+.....+.+.+..++ ....+.=+.-+...-..
T Consensus 79 ~~~~~~G~l~Dr~g------~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~r~l~G~~~~~~~~~~ 143 (467)
T PRK09556 79 VGKTLVGYYADGKN------TKQFLPFLLILSAICMLGFGASLGSGSVSLGLMI---------ALWALSGFFQSTGGPCS 143 (467)
T ss_pred HHHhhhhhHhhccC------ccchHHHHHHHHHHHHHHHHHHHhcccchHHHHH---------HHHHHHHHHHhccchHH
Q ss_pred HHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 009588 420 QTVGCGVLRGSARPSIAANVNLSAFYLAGMPVAIGLGFLLGI---GFCGLWQGLLAAQVCCAGLMLYVVGTTDWDFQAKR 496 (531)
Q Consensus 420 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~---g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~ 496 (531)
.......+...++.+..............+...........+ +..+.+....+..++..++.+.+.+....+....+
T Consensus 144 ~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~ 223 (467)
T PRK09556 144 YSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK 223 (467)
T ss_pred HHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC
Q ss_pred HHHHhccCCcccCcceeeccCCCCC
Q 009588 497 AQILTYTGCVDTTGLLTVDKGEEKQ 521 (531)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (531)
.++..++..+++++..+.++....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (467)
T PRK09556 224 AEEIFGEPISEEDKETESTDMTKWQ 248 (467)
T ss_pred hhhcccCccchhhhccccccCcHHH
No 62
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=30.28 E-value=61 Score=27.79 Aligned_cols=13 Identities=15% Similarity=0.302 Sum_probs=6.2
Q ss_pred ccCCCCCceEEEe
Q 009588 515 DKGEEKQPLICVT 527 (531)
Q Consensus 515 ~~~~~~~~~~~~~ 527 (531)
|.++|...+|-++
T Consensus 147 ddedeD~TvFd~~ 159 (163)
T PF06679_consen 147 DDEDEDSTVFDAN 159 (163)
T ss_pred Cccccccceeeec
Confidence 3333444466554
No 63
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.33 E-value=62 Score=26.22 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=2.1
Q ss_pred HHHHHH
Q 009588 468 QGLLAA 473 (531)
Q Consensus 468 ~a~~~~ 473 (531)
++.+++
T Consensus 71 ~gv~aG 76 (122)
T PF01102_consen 71 FGVMAG 76 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 64
>PRK03612 spermidine synthase; Provisional
Probab=29.22 E-value=6.9e+02 Score=26.23 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHH
Q 009588 213 LTLASLAGTIIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFSLVVY 260 (531)
Q Consensus 213 ~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~ 260 (531)
...-++.+.+-.++..+++++. +|..+..+....-++...++..+.
T Consensus 151 y~~ntlGa~~G~l~~~~vLlp~--lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 151 LAADYLGALVGGLAFPFLLLPR--LGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred HhHHhHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455566777766 777666665555555555444333
No 65
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=29.04 E-value=2.7e+02 Score=25.26 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=21.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Q 009588 134 RPKLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQ 172 (531)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (531)
+++...+.+..++...+++-++++++..+..++..+++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 444555555555555554444445555556677776653
No 66
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=27.00 E-value=3.5e+02 Score=22.11 Aligned_cols=27 Identities=11% Similarity=-0.026 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 009588 360 AKLSAVVAVFVAAIMGLSATVFASGMRD 387 (531)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (531)
.|+..+. ...+..++....+++..+..
T Consensus 4 ~k~~i~~-~~iGi~ig~~i~li~~~~~~ 30 (136)
T PF11457_consen 4 IKKIIKG-FLIGIGIGSFISLIISLFYG 30 (136)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 3444444 34444455544444444333
No 67
>PTZ00370 STEVOR; Provisional
Probab=26.27 E-value=1e+02 Score=28.98 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=16.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHH
Q 009588 462 GFCGLWQGLLAAQVCCAGLMLYVVGTT---DWDFQAK 495 (531)
Q Consensus 462 g~~G~~~a~~~~~~i~~~~~~~~~~~~---~~~~~~~ 495 (531)
+..|++.-.++-..+..++++++++|+ .||+.-+
T Consensus 255 ~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~k 291 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECK 291 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 444554444444444444544444333 3666554
No 68
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=25.94 E-value=6.7e+02 Score=25.03 Aligned_cols=36 Identities=8% Similarity=-0.126 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccc
Q 009588 356 RPERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGR 391 (531)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 391 (531)
+.++.++..+++..++........+++.+..-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367799999999999999888877777766666655
No 69
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=25.55 E-value=7.5e+02 Score=25.40 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=7.6
Q ss_pred HHhhHHHHHHhhhcC
Q 009588 118 LALGMEPLCSQAFGA 132 (531)
Q Consensus 118 l~~~~~~~~s~~~g~ 132 (531)
++.-....+++.+|+
T Consensus 86 ~~~~~~G~l~dr~G~ 100 (476)
T PLN00028 86 FSRLAMGPVCDLYGP 100 (476)
T ss_pred HHHHHHHHHHHHhCC
Confidence 333444455666654
No 70
>PF14184 YrvL: Regulatory protein YrvL
Probab=24.86 E-value=4e+02 Score=22.00 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009588 143 QRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITR-IAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLASLAGT 221 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~i~~~ 221 (531)
.......++..++.++..+....+++++|.+=|... ...-.+....++.|+..+..+..-.+.-.+-.+... .....
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHH
Confidence 334444444555555555566677788875533222 222333445667777777777666665553333332 23445
Q ss_pred HHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHH
Q 009588 222 IIHLPINFLLVTHLRLGVLGVAAAAALSNLCVLFS 256 (531)
Q Consensus 222 ~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~ 256 (531)
.+...+++..++..+.=+.+..+.+..--+++.+.
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is~~~e~i~al~~ 117 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISISTLSEIIFALLF 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeCcHHHHHHHHHH
Confidence 67777777777754433445555444444444433
No 71
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=24.78 E-value=7.9e+02 Score=25.40 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC--hHHHHHHHHHHHHHHHH
Q 009588 60 ESKSLFNLAFPIALTALIIYSRSILSMLFLGH-LG--DLELAGGSLAIAFANIT 110 (531)
Q Consensus 60 ~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~-lg--~~~~~~~~~a~~i~~~~ 110 (531)
..||-+.++.+-+..++.......--..+-.. .| +...|..=....+...+
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi 63 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI 63 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 57888999999998888887777777777766 44 33444444444444444
No 72
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=24.43 E-value=5.6e+02 Score=24.62 Aligned_cols=10 Identities=0% Similarity=-0.134 Sum_probs=4.4
Q ss_pred CCchhHHHHH
Q 009588 461 IGFCGLWQGL 470 (531)
Q Consensus 461 ~g~~G~~~a~ 470 (531)
.|....++..
T Consensus 147 ~~~~~~~~~~ 156 (379)
T TIGR00881 147 YSWHWVFIVP 156 (379)
T ss_pred CCchhHHHHH
Confidence 4544444433
No 73
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.88 E-value=2.2e+02 Score=27.64 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCch--------hHHHHHHHHHHHHHHHHHHHHhcCCh
Q 009588 439 VNLSAFYLAGMPVAIGLGFLLGIGFC--------GLWQGLLAAQVCCAGLMLYVVGTTDW 490 (531)
Q Consensus 439 ~~~~~~~~~~i~~~~~l~~~~~~g~~--------G~~~a~~~~~~i~~~~~~~~~~~~~~ 490 (531)
.++++ .+.+|+.++-+.+ +++.. -.++...+..++..+..+++++|++|
T Consensus 267 Ltilt--~IflPlT~IaGiy-GMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 267 MSLMA--MVFLPTTFLTGLF-GVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHH--HHHHHHHHHHhhh-ccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444 3556777765543 12211 22333444445555566677888777
No 74
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.71 E-value=1.1e+02 Score=24.77 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHcC
Q 009588 240 LGVAAAAALSNLCVLFSLVVYIWASG 265 (531)
Q Consensus 240 ~g~a~a~~i~~~~~~~~~~~~~~~~~ 265 (531)
.|+.+|.+.+-+...++..+.++|++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444333333334444333
No 75
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.51 E-value=2.4e+02 Score=27.15 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCch--------hHHHHHHHHHHHHHHHHHHHHhcCCh
Q 009588 438 NVNLSAFYLAGMPVAIGLGFLLGIGFC--------GLWQGLLAAQVCCAGLMLYVVGTTDW 490 (531)
Q Consensus 438 ~~~~~~~~~~~i~~~~~l~~~~~~g~~--------G~~~a~~~~~~i~~~~~~~~~~~~~~ 490 (531)
..++++ ++.+|..++-+.+ +++.. -.++......++..+..+++++|++|
T Consensus 260 ~LTvvt--~IflP~t~IaGiy-GMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 260 ILTVVS--TIFIPLTFIAGIY-GMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHH--HHHHHHHHHHHHH-hCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345554 4666766665442 22211 22333344444555566778888887
No 76
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.95 E-value=7e+02 Score=24.15 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=9.2
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 009588 395 NDKEIIRLTSAALPILGLC 413 (531)
Q Consensus 395 ~~~~~~~~~~~~l~i~~~~ 413 (531)
+..+..-+....+...-..
T Consensus 196 D~SD~~Le~~K~~nY~~~~ 214 (318)
T KOG1607|consen 196 DASDVFLELGKMLNYLQFE 214 (318)
T ss_pred cchHHHHHHHHHHchhhHH
Confidence 3334455555555554443
No 77
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=22.61 E-value=3.6e+02 Score=20.74 Aligned_cols=20 Identities=0% Similarity=-0.243 Sum_probs=10.8
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 009588 461 IGFCGLWQGLLAAQVCCAGL 480 (531)
Q Consensus 461 ~g~~G~~~a~~~~~~i~~~~ 480 (531)
++-..+++++.+.-+..++=
T Consensus 39 l~~~~aai~MIf~Gi~lMlP 58 (96)
T PF07214_consen 39 LSTPTAAIAMIFVGIGLMLP 58 (96)
T ss_pred ccCchHHHHHHHHHHHHHHH
Confidence 45556666665555444443
No 78
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=22.60 E-value=4.2e+02 Score=23.64 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHhccC---CcccCcceeeccCCCCCceEEEe
Q 009588 489 DWDFQAKRAQILTYTG---CVDTTGLLTVDKGEEKQPLICVT 527 (531)
Q Consensus 489 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 527 (531)
+||+..++.+++.+.+ +|++--....-+..||.|..+|.
T Consensus 75 hwkrle~~keeeddd~stasd~dvli~d~yeraekrpilsvq 116 (319)
T KOG3832|consen 75 HWKRLEKKKEEEDDDESTASDDDVLIADGYERAEKRPILSVQ 116 (319)
T ss_pred HHHHHhhhhhhccccccccCCCcEEEecCchhcccCCcceec
Confidence 5766665554443332 22222222223456677766653
No 79
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=21.37 E-value=6.7e+02 Score=23.31 Aligned_cols=26 Identities=4% Similarity=0.051 Sum_probs=11.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhh
Q 009588 209 ITHPLTLASLAGTIIHLPINFLLVTH 234 (531)
Q Consensus 209 ~~~~~~~~~i~~~~~~i~~~~~li~~ 234 (531)
+.|......++..+.-.+....+-.+
T Consensus 190 ~~r~~~~Ga~~a~v~w~~~~~~f~~Y 215 (259)
T TIGR00765 190 KHRHAFVGAFFAAVLFELAKWLFTFY 215 (259)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445544443
No 80
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=21.18 E-value=1.3e+03 Score=26.75 Aligned_cols=20 Identities=5% Similarity=-0.024 Sum_probs=9.1
Q ss_pred HHHHHHcCChhHHHHHHHHH
Q 009588 201 RIYLRAQGITHPLTLASLAG 220 (531)
Q Consensus 201 ~~~l~a~~~~~~~~~~~i~~ 220 (531)
.......++.+...+.+...
T Consensus 129 ~~~~~~~~r~~~~~~~~~~~ 148 (1146)
T PRK08633 129 PELVGKENLSRANGLLEAFT 148 (1146)
T ss_pred HHhcCcccchhhhhHHHHHH
Confidence 33334444555554544443
No 81
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.16 E-value=31 Score=26.03 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=4.3
Q ss_pred HHhcCChHHH
Q 009588 484 VVGTTDWDFQ 493 (531)
Q Consensus 484 ~~~~~~~~~~ 493 (531)
++.++.|++.
T Consensus 32 Ii~~~IW~~~ 41 (121)
T PF10669_consen 32 IITKSIWHDS 41 (121)
T ss_pred HHHHHHhhhH
Confidence 3344445443
No 82
>TIGR00895 2A0115 benzoate transport.
Probab=21.00 E-value=7.7e+02 Score=23.89 Aligned_cols=10 Identities=20% Similarity=0.255 Sum_probs=4.5
Q ss_pred CCchhHHHHH
Q 009588 461 IGFCGLWQGL 470 (531)
Q Consensus 461 ~g~~G~~~a~ 470 (531)
+|.....+..
T Consensus 168 ~g~~~~~~~~ 177 (398)
T TIGR00895 168 FGWRSLFYVG 177 (398)
T ss_pred ccceeehhhh
Confidence 4544444433
Done!