Query 009588
Match_columns 531
No_of_seqs 283 out of 2190
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 08:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 3.9E-48 1.3E-52 398.1 34.2 431 56-489 6-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 4.7E-19 1.6E-23 181.4 18.7 203 59-262 235-444 (460)
3 4aps_A DI-OR tripeptide H+ sym 86.2 27 0.00094 34.4 24.2 23 459-481 446-468 (491)
4 1pw4_A Glycerol-3-phosphate tr 78.5 49 0.0017 31.9 35.6 23 460-482 409-431 (451)
5 3o7q_A L-fucose-proton symport 60.0 1.2E+02 0.0041 28.9 30.2 42 62-103 26-69 (438)
6 2jwa_A Receptor tyrosine-prote 34.5 63 0.0021 19.9 3.9 12 255-266 29-40 (44)
7 4ev6_A Magnesium transport pro 27.5 97 0.0033 29.0 6.2 49 438-490 281-338 (339)
8 4hkr_A Calcium release-activat 23.0 3.5E+02 0.012 23.0 11.2 146 271-421 16-169 (214)
9 2k1k_A Ephrin type-A receptor 21.4 67 0.0023 19.0 2.3 18 239-256 13-30 (38)
10 1z1m_A Ubiquitin-protein ligas 20.5 63 0.0021 24.6 2.5 27 1-28 1-27 (119)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=3.9e-48 Score=398.06 Aligned_cols=431 Identities=20% Similarity=0.350 Sum_probs=398.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCc
Q 009588 56 EIITESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRP 135 (531)
Q Consensus 56 ~~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 135 (531)
..++..|++++.++|.++++++..+++.+|+.+++++|++++|+++++.++..+. ..+..|++++..+.+++++|++|+
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence 3467899999999999999999999999999999999999999999999998876 788899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 009588 136 KLLSLTLQRSVIFLLFSSIPISLLWLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTL 215 (531)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~ 215 (531)
++.++.+++++.+.++.++++.+++.+.++++.+++.+++..+.+..|+++++++.++..+.....+++++.||++.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999998877777888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-c---CcccchhHHHHHHHHHHHHHHHHHHHHHcCCCc-cc-cCCCCHHHHhcHHHHHHhH
Q 009588 216 ASLAGTIIHLPINFLLVTH-L---RLGVLGVAAAAALSNLCVLFSLVVYIWASGLHE-PT-WTKPTRECLTGWKPLLKLA 289 (531)
Q Consensus 216 ~~i~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~k~i~~~~ 289 (531)
.++++.++|++++++++.. + ++|+.|+++++++++.+..++..++++++++.+ .+ +.++.+++++..|+++++|
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999975 3 699999999999999999998877777654432 11 2233355788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 009588 290 APSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPERAKLSAVVAVF 369 (531)
Q Consensus 290 ~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~ 369 (531)
+|.+++.+...+.+.+++.+++.+++ +++|+|++++++.++...+..+++++..|.+++++|++|.+++++..+++.+
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999965 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcCCcchhhHHHHHHHHHHHH
Q 009588 370 VAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQTVGCGVLRGSARPSIAANVNLSAFYLAGM 449 (531)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 449 (531)
+.+.++++.++++.++++++..+|++|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 402 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHH----hc-CCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 009588 450 PVAIGLGFL----LG-IGFCGLWQGLLAAQVCCAGLMLYVVGTTD 489 (531)
Q Consensus 450 ~~~~~l~~~----~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~~~ 489 (531)
|+.+++... ++ +|..|+|+++.+++++..++..++++|..
T Consensus 403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877 66 99999999999999999888877665543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.81 E-value=4.7e-19 Score=181.38 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCcchH
Q 009588 59 TESKSLFNLAFPIALTALIIYSRSILSMLFLGHLGDLELAGGSLAIAFANITGYSVLSGLALGMEPLCSQAFGAQRPKLL 138 (531)
Q Consensus 59 ~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 138 (531)
+..|++++.++|.+++.+...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++.+|++|+++.
T Consensus 235 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~~ 313 (460)
T 3mkt_A 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKGA 313 (460)
T ss_dssp SSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4678899999999999999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 009588 139 SLTLQRSVIFLLFSSIPISLL-WLNMSKILLYLHQDPNITRIAHSYLLFCLPDLLTNSFVHPIRIYLRAQGITHPLTLAS 217 (531)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~ 217 (531)
++..+.++.+...++++++++ .++.+++..++..+++..+.+..++++++++.++..+..+..+.+++.||++.+++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 393 (460)
T 3mkt_A 314 AIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRT 393 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 999999999999999999886 8888999998888888888999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHhh----cC-cccchhHHHHHHHHHHHHHHHHHHHH
Q 009588 218 LAGT-IIHLPINFLLVTH----LR-LGVLGVAAAAALSNLCVLFSLVVYIW 262 (531)
Q Consensus 218 i~~~-~~~i~~~~~li~~----~~-~g~~g~a~a~~i~~~~~~~~~~~~~~ 262 (531)
+++. ++++++++++... .+ +|+.|+++++.+++.+..++..++++
T Consensus 394 ~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~ 444 (460)
T 3mkt_A 394 FISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY 444 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 8999999999986 66 99999999999999999887755443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=86.20 E-value=27 Score=34.37 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=10.4
Q ss_pred hcCCchhHHHHHHHHHHHHHHHH
Q 009588 459 LGIGFCGLWQGLLAAQVCCAGLM 481 (531)
Q Consensus 459 ~~~g~~G~~~a~~~~~~i~~~~~ 481 (531)
.+.+....++.......+..++.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 446 NAKSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp GGSSTTHHHHHTHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHH
Confidence 33455555554444444443333
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=78.51 E-value=49 Score=31.86 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=13.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHH
Q 009588 460 GIGFCGLWQGLLAAQVCCAGLML 482 (531)
Q Consensus 460 ~~g~~G~~~a~~~~~~i~~~~~~ 482 (531)
..|....++...+..++..++..
T Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 409 FFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHH
Confidence 45766666665555555544443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=59.99 E-value=1.2e+02 Score=28.86 Aligned_cols=42 Identities=17% Similarity=-0.039 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ChHHHHHHHHH
Q 009588 62 KSLFNLAFPIALTALIIYSRSILSMLFLGHL--GDLELAGGSLA 103 (531)
Q Consensus 62 ~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~l--g~~~~~~~~~a 103 (531)
+.+.....-.++..............+..++ ++.+.+.....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 69 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSA 69 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444444444444444445555444444444 45555554433
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.49 E-value=63 Score=19.93 Aligned_cols=12 Identities=8% Similarity=-0.053 Sum_probs=5.9
Q ss_pred HHHHHHHHHcCC
Q 009588 255 FSLVVYIWASGL 266 (531)
Q Consensus 255 ~~~~~~~~~~~~ 266 (531)
+...+|++|++.
T Consensus 29 l~~~~~~RRR~~ 40 (44)
T 2jwa_A 29 VVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHhheehhhh
Confidence 333455655544
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=27.49 E-value=97 Score=28.97 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---------chhHHHHHHHHHHHHHHHHHHHHhcCCh
Q 009588 438 NVNLSAFYLAGMPVAIGLGFLLGIG---------FCGLWQGLLAAQVCCAGLMLYVVGTTDW 490 (531)
Q Consensus 438 ~~~~~~~~~~~i~~~~~l~~~~~~g---------~~G~~~a~~~~~~i~~~~~~~~~~~~~~ 490 (531)
..++++ ++.+|+.++-+.+ +++ ..|.|++ ....++..++.+++++|++|
T Consensus 281 ~LTiit--~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~~-l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 281 ILTMVT--TIFAVPMWITGIY-GMNFSYLPLANNPQGFWLV-MALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHH--HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHHH-HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHHHHhhc-cCcCCCCCCccCchHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 344444 4667777765543 222 2344444 44455566667778888888
No 8
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=23.01 E-value=3.5e+02 Score=22.96 Aligned_cols=146 Identities=9% Similarity=-0.027 Sum_probs=0.0
Q ss_pred cCCCCHHHHhcHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009588 271 WTKPTRECLTGWKPLLKLAAPSCVSVCLEWWWYEIMIVLCGLLVDPKSTVASMGILIQTTSLIYVFPSSLGFAVSTRVGN 350 (531)
Q Consensus 271 ~~~~~~~~~~~~k~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~ 350 (531)
|++. ..++..+|..-+.+.-+..-.+....-.+++. -..+.. .-+.+|++...+.-.+.++..-+++-..|.+-.
T Consensus 16 ~R~l-~ls~aqLKA~S~lSALLaGFAMVAmVE~ql~~--~~~~p~--~LLi~fav~Ttllv~vml~AlMIsTcILPnIea 90 (214)
T 4hkr_A 16 WRKL-QLSRAKLKASSKTSALLSGFAMVAMVEVQLDH--DTNVPP--GMLIAFAICTTLLVAVHMLALMISTCILPNIET 90 (214)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhccceeeEEEEeccC--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HhcCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccccccCcHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009588 351 ELGANR--------PERAKLSAVVAVFVAAIMGLSATVFASGMRDRWGRLFTNDKEIIRLTSAALPILGLCELGNCPQT 421 (531)
Q Consensus 351 ~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 421 (531)
.-+..+ ++|.+.+....-.++..++++....-....-++--+=...+..+....-.++.+.++..|..-.+
T Consensus 91 v~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~WVKF~~~~~~aa~~~t~vliPv~i~F~~Fa~hFY 169 (214)
T 4hkr_A 91 VSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRRAAWSATVVLIPVMIIFMAFAIHFY 169 (214)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHHH
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.44 E-value=67 Score=19.05 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=8.1
Q ss_pred cchhHHHHHHHHHHHHHH
Q 009588 239 VLGVAAAAALSNLCVLFS 256 (531)
Q Consensus 239 ~~g~a~a~~i~~~~~~~~ 256 (531)
+.|+.++.+.+-.+...+
T Consensus 13 IAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHH
Confidence 344455555444443333
No 10
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=20.54 E-value=63 Score=24.62 Aligned_cols=27 Identities=37% Similarity=0.477 Sum_probs=15.3
Q ss_pred CCCCCCCCCccccccccCCCCchhhhhh
Q 009588 1 MCNSNATSTTTIPILTVTDKPAQTQFDL 28 (531)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 28 (531)
|||-+-+. +..++++..+-|+.++...
T Consensus 1 mcntnms~-~tdga~ttsqipasEqe~~ 27 (119)
T 1z1m_A 1 MCNTNMSV-PTDGAVTTSQIPASEQETL 27 (119)
T ss_dssp CCSCSSCC-SSSSCSCSCCSSSSSSCCC
T ss_pred CCcccccc-cCCCCccccccCchhcccc
Confidence 89965543 3345555556666555433
Done!