BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009589
         (531 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
           Pyrimidinopyridone Inhibitor
          Length = 333

 Score = 32.0 bits (71), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 340 SRNVDHHPAF-FAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSH 398
           SR ++  PAF  A   + T +++ F    A+ + FL  K C H    +RN L  N    H
Sbjct: 145 SRVLETDPAFAIANSTLSTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTN---GH 201

Query: 399 SNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFD 443
              +      R I N     S ++ K  A LP   +  +P   FD
Sbjct: 202 VAKIGDFGLARDIMND----SNYIVKGNARLPV--KWMAPESIFD 240


>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
           Arylamide Inhibitor
          Length = 333

 Score = 30.8 bits (68), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 340 SRNVDHHPAF-FAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSH 398
           SR ++  PAF  A     T +++ F    A+ + FL  K C H    +RN L  N    H
Sbjct: 145 SRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTN---GH 201

Query: 399 SNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFD 443
              +      R I N     S ++ K  A LP   +  +P   FD
Sbjct: 202 VAKIGDFGLARDIMND----SNYIVKGNARLPV--KWMAPESIFD 240


>pdb|2V6S|A Chain A, Medium Resolution Crystal Structure Of Pterin-4a-
           Carbinolamine Dehydratase From Toxoplasma Gondii
 pdb|2V6S|B Chain B, Medium Resolution Crystal Structure Of Pterin-4a-
           Carbinolamine Dehydratase From Toxoplasma Gondii
 pdb|2V6T|A Chain A, Crystal Structure Of A Complex Of Pterin-4a-Carbinolamine
           Dehydratase From Toxoplasma Gondii With 7,8-
           Dihydrobiopterin
 pdb|2V6T|B Chain B, Crystal Structure Of A Complex Of Pterin-4a-Carbinolamine
           Dehydratase From Toxoplasma Gondii With 7,8-
           Dihydrobiopterin
          Length = 106

 Score = 30.4 bits (67), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 16/86 (18%)

Query: 295 TDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYN 354
           TD  +S+K+KF   F D+ +   W   F+ R  L           +  VDHHP ++ VYN
Sbjct: 29  TDGHLSIKRKF--QFSDFNE--AWG--FMSRVALY----------ADKVDHHPNWYNVYN 72

Query: 355 METTEVVAFYQNSAEELYFLFEKFCD 380
               E+         E  F   KF D
Sbjct: 73  TVDVELSTHDAAGLTEKDFALAKFMD 98


>pdb|2V6U|A Chain A, High Resolution Crystal Structure Of Pterin-4a-
           Carbinolamine Dehydratase From Toxoplasma Gondii
 pdb|2V6U|B Chain B, High Resolution Crystal Structure Of Pterin-4a-
           Carbinolamine Dehydratase From Toxoplasma Gondii
          Length = 104

 Score = 30.4 bits (67), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 16/86 (18%)

Query: 295 TDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYN 354
           TD  +S+K+KF   F D+ +   W   F+ R  L           +  VDHHP ++ VYN
Sbjct: 27  TDGHLSIKRKF--QFSDFNE--AWG--FMSRVALY----------ADKVDHHPNWYNVYN 70

Query: 355 METTEVVAFYQNSAEELYFLFEKFCD 380
               E+         E  F   KF D
Sbjct: 71  TVDVELSTHDAAGLTEKDFALAKFMD 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,131,537
Number of Sequences: 62578
Number of extensions: 603245
Number of successful extensions: 1634
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1634
Number of HSP's gapped (non-prelim): 4
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)