Query 009590
Match_columns 531
No_of_seqs 272 out of 1565
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 14:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00403 HMA: Heavy-metal-asso 99.1 3.1E-10 6.8E-15 89.5 8.6 58 13-70 1-62 (62)
2 COG2608 CopZ Copper chaperone 99.0 1.6E-09 3.5E-14 89.1 9.3 65 10-74 2-70 (71)
3 KOG1603 Copper chaperone [Inor 98.9 7.1E-09 1.5E-13 85.6 8.9 68 8-75 3-71 (73)
4 KOG4656 Copper chaperone for s 98.5 4.1E-07 8.8E-12 88.8 8.1 69 9-77 6-74 (247)
5 PLN02957 copper, zinc superoxi 98.1 1.8E-05 3.9E-10 79.3 10.4 73 7-79 3-75 (238)
6 PRK10671 copA copper exporting 97.7 7.4E-05 1.6E-09 86.9 8.2 64 10-75 3-67 (834)
7 TIGR00003 copper ion binding p 97.6 0.00068 1.5E-08 49.3 8.9 61 11-71 3-67 (68)
8 COG2217 ZntA Cation transport 97.5 0.00024 5.3E-09 81.4 8.1 63 10-73 2-69 (713)
9 KOG0207 Cation transport ATPas 97.4 0.00022 4.7E-09 82.3 6.2 66 10-75 146-215 (951)
10 KOG0207 Cation transport ATPas 97.1 0.0014 2.9E-08 76.0 8.5 70 9-78 68-141 (951)
11 PRK10671 copA copper exporting 96.3 0.0096 2.1E-07 69.6 8.2 65 11-75 100-165 (834)
12 PF06524 NOA36: NOA36 protein; 95.8 0.0057 1.2E-07 62.1 2.6 9 19-27 99-107 (314)
13 PRK11033 zntA zinc/cadmium/mer 95.6 0.037 8.1E-07 64.1 8.6 66 9-74 52-119 (741)
14 PF06524 NOA36: NOA36 protein; 95.3 0.01 2.3E-07 60.3 2.5 11 18-28 39-49 (314)
15 PRK13748 putative mercuric red 93.2 0.37 7.9E-06 53.5 9.1 88 13-100 3-109 (561)
16 TIGR02052 MerP mercuric transp 92.4 1.6 3.5E-05 34.9 9.7 62 11-72 24-89 (92)
17 KOG1832 HIV-1 Vpr-binding prot 92.2 0.072 1.6E-06 62.0 1.9 8 30-37 1295-1302(1516)
18 PF05764 YL1: YL1 nuclear prot 92.0 0.12 2.5E-06 52.4 2.9 13 176-188 37-49 (240)
19 cd00371 HMA Heavy-metal-associ 90.9 2.1 4.6E-05 27.8 7.5 53 17-69 6-60 (63)
20 PF05764 YL1: YL1 nuclear prot 88.4 0.37 7.9E-06 48.8 3.0 11 183-193 35-45 (240)
21 KOG1991 Nuclear transport rece 87.5 0.31 6.7E-06 57.5 2.0 17 56-72 802-818 (1010)
22 KOG1991 Nuclear transport rece 87.2 0.33 7.2E-06 57.2 2.1 11 26-36 751-761 (1010)
23 PF04889 Cwf_Cwc_15: Cwf15/Cwc 86.7 0.29 6.2E-06 49.9 1.1 7 59-65 58-64 (244)
24 COG1888 Uncharacterized protei 82.7 6.1 0.00013 34.7 7.2 66 8-73 4-78 (97)
25 KOG2023 Nuclear transport rece 81.2 0.82 1.8E-05 52.4 1.8 23 19-41 94-116 (885)
26 PF01206 TusA: Sulfurtransfera 80.3 5.2 0.00011 32.1 5.8 54 13-75 2-58 (70)
27 KOG3241 Uncharacterized conser 79.8 1.4 3.1E-05 43.0 2.7 13 19-31 44-56 (227)
28 PRK14054 methionine sulfoxide 76.1 13 0.00027 36.2 8.0 46 21-66 10-77 (172)
29 PF09849 DUF2076: Uncharacteri 75.0 2.6 5.7E-05 43.1 3.2 14 24-37 6-19 (247)
30 PTZ00248 eukaryotic translatio 73.8 19 0.00041 38.3 9.3 21 14-34 187-209 (319)
31 KOG2038 CAATT-binding transcri 72.8 2 4.3E-05 50.0 1.9 21 21-41 594-614 (988)
32 KOG2038 CAATT-binding transcri 72.4 2.2 4.7E-05 49.7 2.0 6 275-280 960-965 (988)
33 PF02680 DUF211: Uncharacteriz 70.9 21 0.00045 31.7 7.3 63 9-72 4-75 (95)
34 PF14283 DUF4366: Domain of un 70.0 3 6.6E-05 41.9 2.3 33 37-69 85-119 (218)
35 PF05086 Dicty_REP: Dictyostel 68.6 2.4 5.2E-05 49.2 1.3 11 56-66 764-774 (911)
36 PTZ00329 eukaryotic translatio 67.3 3.6 7.9E-05 39.3 2.1 9 44-52 42-50 (155)
37 PRK11018 hypothetical protein; 66.0 24 0.00051 29.6 6.5 53 12-73 9-64 (78)
38 PRK10553 assembly protein for 63.1 52 0.0011 28.6 8.2 46 21-66 16-62 (87)
39 PRK00058 methionine sulfoxide 62.3 20 0.00044 36.0 6.3 28 20-47 51-78 (213)
40 PF04050 Upf2: Up-frameshift s 62.2 2.5 5.5E-05 40.5 0.0 7 277-283 93-99 (170)
41 PF11702 DUF3295: Protein of u 61.0 4.6 0.0001 45.1 1.7 12 514-526 489-500 (507)
42 PF09849 DUF2076: Uncharacteri 59.9 8.3 0.00018 39.5 3.2 17 20-36 25-41 (247)
43 PF12253 CAF1A: Chromatin asse 59.3 8.1 0.00018 32.9 2.5 13 179-191 37-49 (77)
44 PF01883 DUF59: Domain of unkn 58.9 17 0.00038 29.3 4.4 32 11-42 35-72 (72)
45 PF02724 CDC45: CDC45-like pro 57.9 7.2 0.00016 44.8 2.7 22 16-37 6-28 (622)
46 PF02724 CDC45: CDC45-like pro 57.6 8.1 0.00018 44.4 3.0 20 12-31 28-48 (622)
47 KOG3540 Beta amyloid precursor 57.0 9.5 0.00021 42.5 3.2 12 56-67 79-90 (615)
48 cd03421 SirA_like_N SirA_like_ 56.3 30 0.00066 27.6 5.3 49 14-72 2-53 (67)
49 PRK05528 methionine sulfoxide 56.3 32 0.0007 32.9 6.3 27 21-47 8-34 (156)
50 PRK12766 50S ribosomal protein 56.0 4.1 8.9E-05 41.3 0.3 10 61-70 16-25 (232)
51 KOG1924 RhoA GTPase effector D 54.5 16 0.00034 43.1 4.5 8 180-187 353-360 (1102)
52 cd03420 SirA_RHOD_Pry_redox Si 52.4 40 0.00087 27.3 5.5 52 14-74 2-56 (69)
53 PF03927 NapD: NapD protein; 50.6 63 0.0014 27.3 6.5 45 23-68 16-61 (79)
54 PRK00299 sulfur transfer prote 50.3 68 0.0015 27.0 6.7 53 12-73 10-65 (81)
55 cd03423 SirA SirA (also known 50.3 53 0.0012 26.6 5.9 49 17-74 6-56 (69)
56 PRK13014 methionine sulfoxide 49.7 30 0.00066 34.0 5.1 28 21-48 15-42 (186)
57 PF11702 DUF3295: Protein of u 48.1 12 0.00025 42.1 2.2 6 467-472 446-451 (507)
58 PTZ00329 eukaryotic translatio 46.6 11 0.00024 36.1 1.5 8 144-151 99-106 (155)
59 KOG3064 RNA-binding nuclear pr 45.9 7.3 0.00016 40.2 0.2 12 39-50 50-61 (303)
60 PHA03346 US22 family homolog; 45.9 13 0.00027 42.1 2.1 13 20-32 234-246 (520)
61 KOG0127 Nucleolar protein fibr 45.5 9.9 0.00021 43.0 1.1 12 26-37 21-32 (678)
62 cd03422 YedF YedF is a bacteri 45.4 60 0.0013 26.3 5.5 49 17-74 6-56 (69)
63 cd00291 SirA_YedF_YeeD SirA, Y 45.2 68 0.0015 25.3 5.7 49 17-74 6-56 (69)
64 KOG0127 Nucleolar protein fibr 44.1 12 0.00026 42.4 1.5 11 24-34 57-67 (678)
65 TIGR02300 FYDLN_acid conserved 43.3 21 0.00045 33.3 2.7 9 19-27 11-19 (129)
66 PF09580 Spore_YhcN_YlaJ: Spor 43.3 52 0.0011 31.1 5.6 34 19-52 72-105 (177)
67 PTZ00482 membrane-attack compl 43.1 13 0.00028 44.3 1.6 12 31-42 16-27 (844)
68 COG1254 AcyP Acylphosphatases 42.7 1.4E+02 0.0031 26.1 7.7 58 9-67 3-65 (92)
69 PF10873 DUF2668: Protein of u 40.7 31 0.00066 32.9 3.4 8 496-503 130-137 (155)
70 PF14437 MafB19-deam: MafB19-l 40.6 58 0.0013 31.0 5.3 41 10-51 100-142 (146)
71 PF01625 PMSR: Peptide methion 40.6 58 0.0012 31.1 5.4 27 21-47 7-33 (155)
72 PRK05550 bifunctional methioni 40.5 63 0.0014 33.9 6.0 28 20-47 133-160 (283)
73 PF14492 EFG_II: Elongation Fa 40.4 91 0.002 25.7 5.9 61 12-72 6-72 (75)
74 COG4530 Uncharacterized protei 40.2 19 0.00042 32.8 1.9 9 19-27 11-19 (129)
75 KOG4364 Chromatin assembly fac 39.0 21 0.00045 41.3 2.4 20 18-37 366-385 (811)
76 cd02966 TlpA_like_family TlpA- 38.4 1.8E+02 0.004 23.4 7.6 48 17-73 28-81 (116)
77 KOG1189 Global transcriptional 38.2 19 0.00042 42.2 2.1 11 86-96 797-807 (960)
78 KOG2236 Uncharacterized conser 38.0 19 0.00041 39.9 1.8 20 501-520 456-475 (483)
79 PRK02363 DNA-directed RNA poly 37.7 19 0.00042 33.4 1.6 12 55-66 20-31 (129)
80 PF08777 RRM_3: RNA binding mo 37.5 1.2E+02 0.0027 26.8 6.7 56 12-67 2-60 (105)
81 PRK14425 acylphosphatase; Prov 37.0 1.6E+02 0.0035 25.6 7.2 55 11-66 7-66 (94)
82 PF13732 DUF4162: Domain of un 36.7 97 0.0021 25.3 5.6 44 31-76 26-71 (84)
83 KOG3360 Acylphosphatase [Energ 36.3 1.4E+02 0.003 26.8 6.5 66 9-74 7-76 (98)
84 PRK14426 acylphosphatase; Prov 36.3 1.8E+02 0.0039 25.1 7.3 55 11-66 5-64 (92)
85 PF10628 CotE: Outer spore coa 36.2 21 0.00046 35.0 1.7 11 22-32 3-13 (182)
86 KOG4032 Uncharacterized conser 36.1 26 0.00055 34.5 2.2 14 55-68 61-74 (184)
87 TIGR00993 3a0901s04IAP86 chlor 35.5 22 0.00048 41.6 2.0 6 278-283 553-558 (763)
88 TIGR02300 FYDLN_acid conserved 35.0 31 0.00067 32.2 2.5 13 18-30 27-39 (129)
89 PHA03283 envelope glycoprotein 35.0 27 0.00059 39.3 2.5 14 87-100 351-364 (542)
90 KOG4730 D-arabinono-1, 4-lacto 34.7 24 0.00053 39.2 2.1 50 17-71 87-136 (518)
91 PF14442 Bd3614_N: Bd3614-like 34.5 24 0.00052 32.7 1.7 6 59-64 41-46 (138)
92 KOG0699 Serine/threonine prote 33.1 25 0.00054 38.2 1.8 12 21-32 66-77 (542)
93 KOG3555 Ca2+-binding proteogly 33.0 30 0.00065 37.3 2.3 24 18-41 106-130 (434)
94 PRK14440 acylphosphatase; Prov 32.6 1.9E+02 0.0042 24.9 6.9 56 10-66 3-63 (90)
95 KOG2548 SWAP mRNA splicing reg 32.6 28 0.00061 39.3 2.1 16 55-70 77-92 (653)
96 KOG4364 Chromatin assembly fac 32.3 27 0.00058 40.5 1.9 11 461-472 740-750 (811)
97 PF11491 DUF3213: Protein of u 32.0 57 0.0012 28.4 3.4 59 14-72 3-64 (88)
98 COG3076 Uncharacterized protei 31.5 24 0.00052 32.2 1.2 7 66-72 52-58 (135)
99 PHA03283 envelope glycoprotein 31.5 33 0.00071 38.7 2.4 6 59-64 353-358 (542)
100 cd04906 ACT_ThrD-I_1 First of 31.4 3.1E+02 0.0067 22.9 8.1 62 14-76 4-74 (85)
101 COG0425 SirA Predicted redox p 30.7 1.8E+02 0.004 24.5 6.3 52 11-71 5-60 (78)
102 PRK14448 acylphosphatase; Prov 30.5 2.4E+02 0.0053 24.2 7.2 55 11-66 3-62 (90)
103 smart00362 RRM_2 RNA recogniti 30.1 2.2E+02 0.0048 20.7 6.4 53 14-67 2-59 (72)
104 COG2761 FrnE Predicted dithiol 29.6 94 0.002 31.6 5.1 40 10-49 4-48 (225)
105 KOG4032 Uncharacterized conser 29.1 34 0.00074 33.7 1.8 7 27-33 17-23 (184)
106 PF10991 DUF2815: Protein of u 28.3 24 0.00052 34.6 0.6 6 59-64 46-51 (181)
107 TIGR01659 sex-lethal sex-letha 28.3 7.6E+02 0.016 26.5 11.9 123 2-137 184-313 (346)
108 cd03012 TlpA_like_DipZ_like Tl 28.1 2.4E+02 0.0052 24.7 7.0 57 11-71 25-87 (126)
109 KOG0699 Serine/threonine prote 28.1 32 0.0007 37.4 1.6 10 55-64 144-153 (542)
110 cd04883 ACT_AcuB C-terminal AC 27.9 2.9E+02 0.0063 21.4 8.4 53 20-72 11-69 (72)
111 cd06407 PB1_NLP A PB1 domain i 27.0 3.6E+02 0.0079 22.9 7.5 65 6-70 6-74 (82)
112 PRK15317 alkyl hydroperoxide r 26.8 78 0.0017 35.2 4.4 16 12-27 118-135 (517)
113 TIGR03406 FeS_long_SufT probab 26.7 65 0.0014 31.4 3.3 34 11-44 114-153 (174)
114 PHA02854 putative host range p 26.2 44 0.00094 32.7 2.0 7 89-95 110-116 (178)
115 KOG3648 Golgi apparatus protei 26.1 46 0.001 38.6 2.4 6 133-138 60-65 (1179)
116 PRK11670 antiporter inner memb 26.0 1.4E+02 0.003 32.2 5.9 55 24-78 67-146 (369)
117 COG0225 MsrA Peptide methionin 25.9 1.6E+02 0.0035 28.8 5.8 28 21-48 13-40 (174)
118 KOG1980 Uncharacterized conser 25.9 34 0.00073 39.6 1.3 7 89-95 285-291 (754)
119 KOG3411 40S ribosomal protein 25.7 49 0.0011 31.1 2.1 48 19-66 92-140 (143)
120 PRK14449 acylphosphatase; Prov 25.2 3.7E+02 0.008 23.0 7.4 55 11-66 4-63 (90)
121 TIGR00401 msrA methionine-S-su 25.1 1.5E+02 0.0032 28.2 5.3 27 21-47 7-33 (149)
122 PF11111 CENP-M: Centromere pr 25.0 73 0.0016 31.3 3.3 57 9-71 65-130 (176)
123 PF13740 ACT_6: ACT domain; PD 24.9 2.5E+02 0.0054 22.9 6.0 56 11-66 2-64 (76)
124 PRK12596 putative monovalent c 24.3 4.9E+02 0.011 25.0 8.8 54 12-65 93-148 (171)
125 KOG2140 Uncharacterized conser 24.1 48 0.001 37.8 2.1 11 60-70 295-305 (739)
126 cd04909 ACT_PDH-BS C-terminal 24.0 3.3E+02 0.0071 21.1 6.4 52 20-71 11-69 (69)
127 COG3343 RpoE DNA-directed RNA 23.8 40 0.00086 32.9 1.2 14 55-68 31-44 (175)
128 TIGR00377 ant_ant_sig anti-ant 23.7 1.6E+02 0.0034 24.9 4.8 67 11-78 13-85 (108)
129 PRK14422 acylphosphatase; Prov 23.6 4E+02 0.0087 23.1 7.3 57 9-66 5-66 (93)
130 PF13192 Thioredoxin_3: Thiore 23.4 72 0.0016 26.0 2.6 10 16-25 6-15 (76)
131 PRK14441 acylphosphatase; Prov 23.3 4.5E+02 0.0098 22.7 7.6 57 9-66 4-65 (93)
132 PRK14424 acylphosphatase; Prov 22.9 4.2E+02 0.009 23.2 7.3 57 9-66 6-67 (94)
133 cd04888 ACT_PheB-BS C-terminal 22.9 2E+02 0.0044 22.6 5.1 31 12-42 43-74 (76)
134 COG3076 Uncharacterized protei 22.6 44 0.00096 30.6 1.2 9 24-32 12-20 (135)
135 PRK14447 acylphosphatase; Prov 22.2 4.2E+02 0.0091 23.0 7.2 32 35-66 30-65 (95)
136 cd03010 TlpA_like_DsbE TlpA-li 22.2 5.2E+02 0.011 22.3 8.6 49 12-70 28-80 (127)
137 PRK07334 threonine dehydratase 22.1 2.9E+02 0.0062 29.9 7.5 63 12-74 327-402 (403)
138 PRK14429 acylphosphatase; Prov 22.0 4E+02 0.0086 22.9 6.9 54 12-66 4-62 (90)
139 PF08712 Nfu_N: Scaffold prote 21.9 1.9E+02 0.004 24.9 4.9 39 26-66 38-78 (87)
140 PRK14444 acylphosphatase; Prov 21.6 4.5E+02 0.0098 22.7 7.3 56 10-66 4-64 (92)
141 PF08534 Redoxin: Redoxin; In 21.6 2.9E+02 0.0062 24.6 6.3 52 10-72 29-88 (146)
142 cd02410 archeal_CPSF_KH The ar 21.6 1.5E+02 0.0032 28.4 4.4 68 11-78 38-116 (145)
143 cd04908 ACT_Bt0572_1 N-termina 21.5 4E+02 0.0086 20.8 8.3 54 19-72 10-65 (66)
144 PRK11200 grxA glutaredoxin 1; 21.3 1.9E+02 0.0042 23.7 4.8 27 17-44 8-38 (85)
145 PRK10026 arsenate reductase; P 21.0 2.8E+02 0.0061 26.1 6.2 51 12-70 4-54 (141)
146 PF00708 Acylphosphatase: Acyl 20.4 4.7E+02 0.01 22.0 7.1 64 10-74 4-72 (91)
147 cd02951 SoxW SoxW family; SoxW 20.2 3.5E+02 0.0076 23.5 6.5 17 11-27 16-33 (125)
148 PHA03075 glutaredoxin-like pro 20.1 3.7E+02 0.0081 25.0 6.5 59 13-72 5-71 (123)
149 TIGR02898 spore_YhcN_YlaJ spor 20.1 2.4E+02 0.0052 27.1 5.7 31 22-52 54-84 (158)
150 TIGR01617 arsC_related transcr 20.0 1.7E+02 0.0038 25.8 4.5 45 17-69 6-50 (117)
No 1
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.12 E-value=3.1e-10 Score=89.52 Aligned_cols=58 Identities=34% Similarity=0.604 Sum_probs=53.9
Q ss_pred EEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHHcCCc
Q 009590 13 VLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKH 70 (531)
Q Consensus 13 ~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~kaGy~ 70 (531)
+|+| +|+|.+|+.+|+++|++++||.++++|+...+|+|+.+ +++++|+++|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 5889 89999999999999999999999999999999999965 5669999999999995
No 2
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.6e-09 Score=89.10 Aligned_cols=65 Identities=32% Similarity=0.540 Sum_probs=57.9
Q ss_pred eEEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe---cCCHHHHHHHHHHcCCceEEc
Q 009590 10 QTYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELW 74 (531)
Q Consensus 10 ~kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g---~v~pd~Ii~aI~kaGy~A~l~ 74 (531)
.+++|+| +|+|.+|+.+|+++|++++||.+++|+++.++++|+. .++.++|+++|+++||.+..+
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 4567999 8999999999999999999999999999997777763 479999999999999998654
No 3
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.90 E-value=7.1e-09 Score=85.61 Aligned_cols=68 Identities=60% Similarity=0.987 Sum_probs=62.3
Q ss_pred cceEEEEEEccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcC-CceEEcC
Q 009590 8 KIQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSG-KHAELWG 75 (531)
Q Consensus 8 ~~~kv~LkVgM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaG-y~A~l~~ 75 (531)
.+.+++++|.|||..|+.+|++.|+.+.||.++++|....+|+|.+.++++.|++.|++.+ .++++|.
T Consensus 3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~ 71 (73)
T KOG1603|consen 3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELWK 71 (73)
T ss_pred CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEec
Confidence 3567788899999999999999999999999999999999999999999999999999988 7777664
No 4
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.48 E-value=4.1e-07 Score=88.80 Aligned_cols=69 Identities=30% Similarity=0.500 Sum_probs=63.8
Q ss_pred ceEEEEEEccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcCCceEEcCcc
Q 009590 9 IQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGAQ 77 (531)
Q Consensus 9 ~~kv~LkVgM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaGy~A~l~~~~ 77 (531)
.-+++|.|.|+|++|+..|++.|..++||.+|+|+++.+.|+|.+.+.+.+|+.+|+.+|.+|++....
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G 74 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAG 74 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCC
Confidence 345678899999999999999999999999999999999999999999999999999999999987653
No 5
>PLN02957 copper, zinc superoxide dismutase
Probab=98.10 E-value=1.8e-05 Score=79.32 Aligned_cols=73 Identities=25% Similarity=0.447 Sum_probs=64.2
Q ss_pred ccceEEEEEEccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcCCceEEcCcccc
Q 009590 7 MKIQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWGAQKA 79 (531)
Q Consensus 7 ~~~~kv~LkVgM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaGy~A~l~~~~~~ 79 (531)
+..++++|.|.|+|..|+.+|+++|+++++|..+.+++...+++|+..+..++|+.+|++++|.++++.....
T Consensus 3 ~~~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~ 75 (238)
T PLN02957 3 LPELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDP 75 (238)
T ss_pred CCcEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCc
Confidence 3456677888999999999999999999999999999999999998777889999999999999988766443
No 6
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.72 E-value=7.4e-05 Score=86.93 Aligned_cols=64 Identities=23% Similarity=0.415 Sum_probs=56.5
Q ss_pred eEEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcCCceEEcC
Q 009590 10 QTYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (531)
Q Consensus 10 ~kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaGy~A~l~~ 75 (531)
.+++|+| +|+|.+|+.+|+++|++++||..++|++. +++|+..++.+.|+++|+++||+++...
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 4678999 79999999999999999999999999994 5566666789999999999999988654
No 7
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.58 E-value=0.00068 Score=49.25 Aligned_cols=61 Identities=18% Similarity=0.455 Sum_probs=50.4
Q ss_pred EEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHHcCCce
Q 009590 11 TYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHA 71 (531)
Q Consensus 11 kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~kaGy~A 71 (531)
++.|.| +++|..|..+|++.|..+.+|..+.+++...++.|+.. +....|+..|+..+|.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 356888 79999999999999999999999999999998888742 46677777777877753
No 8
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00024 Score=81.39 Aligned_cols=63 Identities=27% Similarity=0.521 Sum_probs=55.9
Q ss_pred eEEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CC-HHHHHHHHHHcCCceEE
Q 009590 10 QTYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VD-PSVLIKKLAKSGKHAEL 73 (531)
Q Consensus 10 ~kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~-pd~Ii~aI~kaGy~A~l 73 (531)
.+++|.| +|+|..|+.+|| +|++++||..++|++.+++++|+.+ ++ .++++.+|++++|.++.
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 3567899 899999999999 9999999999999999999998853 34 78999999999998764
No 9
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00022 Score=82.34 Aligned_cols=66 Identities=26% Similarity=0.429 Sum_probs=60.1
Q ss_pred eEEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe---cCCHHHHHHHHHHcCCceEEcC
Q 009590 10 QTYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELWG 75 (531)
Q Consensus 10 ~kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g---~v~pd~Ii~aI~kaGy~A~l~~ 75 (531)
.+++|.| +|+|..|+.+||+.|.++.||.++++++...+++|.. .+.+.+|++.|+++++++.+..
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~ 215 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRP 215 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeee
Confidence 5678999 8999999999999999999999999999999999875 3799999999999999977655
No 10
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0014 Score=75.99 Aligned_cols=70 Identities=23% Similarity=0.374 Sum_probs=62.3
Q ss_pred ceEEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe---cCCHHHHHHHHHHcCCceEEcCccc
Q 009590 9 IQTYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAELWGAQK 78 (531)
Q Consensus 9 ~~kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g---~v~pd~Ii~aI~kaGy~A~l~~~~~ 78 (531)
..++.|+| +|+|..|+..|++.|++++||.++.|.+..++.+|.. .++++.+++.|+++||.+++++...
T Consensus 68 ~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~ 141 (951)
T KOG0207|consen 68 ASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVN 141 (951)
T ss_pred cceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhccc
Confidence 34678999 8999999999999999999999999999999999985 3789999999999999998776543
No 11
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.33 E-value=0.0096 Score=69.61 Aligned_cols=65 Identities=25% Similarity=0.454 Sum_probs=56.7
Q ss_pred EEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcCCceEEcC
Q 009590 11 TYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAELWG 75 (531)
Q Consensus 11 kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaGy~A~l~~ 75 (531)
+++|.| +|+|..|+.+|++.|.++++|..+++++...++.|+...++++|.+.|++++|.+.++.
T Consensus 100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~~ 165 (834)
T PRK10671 100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAIE 165 (834)
T ss_pred eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCccccc
Confidence 466888 79999999999999999999999999999998888755678888899999999876543
No 12
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=95.80 E-value=0.0057 Score=62.11 Aligned_cols=9 Identities=44% Similarity=0.763 Sum_probs=4.4
Q ss_pred ccHHHHHHH
Q 009590 19 HCDGCKHKV 27 (531)
Q Consensus 19 ~C~~Ca~KV 27 (531)
.|+.|+..|
T Consensus 99 iCDfCEawv 107 (314)
T PF06524_consen 99 ICDFCEAWV 107 (314)
T ss_pred hhccchhhe
Confidence 455554444
No 13
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.59 E-value=0.037 Score=64.13 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=54.2
Q ss_pred ceEEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec-CCHHHHHHHHHHcCCceEEc
Q 009590 9 IQTYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN-VDPSVLIKKLAKSGKHAELW 74 (531)
Q Consensus 9 ~~kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~-v~pd~Ii~aI~kaGy~A~l~ 74 (531)
..+++++| +|+|.+|+.+|++.|.++++|..+++++...++.|..+ ...++|...+++++|++..+
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~~ 119 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRDE 119 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccccccc
Confidence 34567888 79999999999999999999999999999998887643 12267778889999987644
No 14
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=95.32 E-value=0.01 Score=60.29 Aligned_cols=11 Identities=45% Similarity=1.105 Sum_probs=7.7
Q ss_pred cccHHHHHHHH
Q 009590 18 IHCDGCKHKVK 28 (531)
Q Consensus 18 M~C~~Ca~KVE 28 (531)
|.|+.|.++-+
T Consensus 39 MeCdkC~r~QK 49 (314)
T PF06524_consen 39 MECDKCQRKQK 49 (314)
T ss_pred ccchhhhhhcc
Confidence 67888876654
No 15
>PRK13748 putative mercuric reductase; Provisional
Probab=93.21 E-value=0.37 Score=53.51 Aligned_cols=88 Identities=24% Similarity=0.424 Sum_probs=62.3
Q ss_pred EEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe--cCCHHHHHHHHHHcCCceEEcCccccccc------c
Q 009590 13 VLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAELWGAQKANNN------Q 83 (531)
Q Consensus 13 ~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g--~v~pd~Ii~aI~kaGy~A~l~~~~~~~~~------~ 83 (531)
.+.+ +++|..|..+++..+..+++|..+.+++...++.+.. ....+.+...++.++++++++...+.+++ .
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADAPPTDNRGGLLDKM 82 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCccccccccchhhhh
Confidence 3557 6899999999999999999998888888888776663 23556677778888888776665322210 0
Q ss_pred CCc----------cccccceeecCCCC
Q 009590 84 NNL----------PNQFKNMQLDNGKG 100 (531)
Q Consensus 84 ~~~----------~~q~~~l~I~~g~g 100 (531)
..+ ..+|+.++|+.|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~DvvVIG~Gpa 109 (561)
T PRK13748 83 RGWLGGADKHSGNERPLHVAVIGSGGA 109 (561)
T ss_pred hhhhccccchhcccCCCCEEEECcCHH
Confidence 001 13589999987654
No 16
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=92.36 E-value=1.6 Score=34.86 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=45.8
Q ss_pred EEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe---cCCHHHHHHHHHHcCCceE
Q 009590 11 TYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAE 72 (531)
Q Consensus 11 kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g---~v~pd~Ii~aI~kaGy~A~ 72 (531)
++.+.+ .+.|..|...++..+....+|..+.+.+...++.+.. ......+...+++.++.++
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 89 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSS 89 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeE
Confidence 455667 6899999999999999999988888887777766542 1355555566677777654
No 17
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.19 E-value=0.072 Score=62.01 Aligned_cols=8 Identities=13% Similarity=0.530 Sum_probs=3.2
Q ss_pred HHhCCCCe
Q 009590 30 ILQKIDGV 37 (531)
Q Consensus 30 aL~ki~GV 37 (531)
.|+.++-.
T Consensus 1295 lLh~VP~L 1302 (1516)
T KOG1832|consen 1295 LLHSVPSL 1302 (1516)
T ss_pred HHhcCccc
Confidence 34444433
No 18
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.01 E-value=0.12 Score=52.36 Aligned_cols=13 Identities=8% Similarity=0.381 Sum_probs=6.1
Q ss_pred CCcccccCCCCCC
Q 009590 176 QNQKAVKFNIPDD 188 (531)
Q Consensus 176 ~~~~~~~~~~~~d 188 (531)
.+..|+.|...++
T Consensus 37 Eee~D~ef~~~~~ 49 (240)
T PF05764_consen 37 EEEDDEEFESEEE 49 (240)
T ss_pred ccCCCccccCCCc
Confidence 3444555554444
No 19
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=90.88 E-value=2.1 Score=27.77 Aligned_cols=53 Identities=34% Similarity=0.650 Sum_probs=35.4
Q ss_pred ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEecC--CHHHHHHHHHHcCC
Q 009590 17 NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNV--DPSVLIKKLAKSGK 69 (531)
Q Consensus 17 gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~v--~pd~Ii~aI~kaGy 69 (531)
.+.|..|...++..+....++....+.+...++.+.... ....+...++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGY 60 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCC
Confidence 578999999999988888888777777766665555322 34444344444443
No 20
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.40 E-value=0.37 Score=48.78 Aligned_cols=11 Identities=45% Similarity=0.912 Sum_probs=5.9
Q ss_pred CCCCCCCCCCC
Q 009590 183 FNIPDDDEDFS 193 (531)
Q Consensus 183 ~~~~~dddd~d 193 (531)
|..+++|+||.
T Consensus 35 f~Eee~D~ef~ 45 (240)
T PF05764_consen 35 FQEEEDDEEFE 45 (240)
T ss_pred ccccCCCcccc
Confidence 55555555444
No 21
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.48 E-value=0.31 Score=57.46 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHcCCceE
Q 009590 56 DPSVLIKKLAKSGKHAE 72 (531)
Q Consensus 56 ~pd~Ii~aI~kaGy~A~ 72 (531)
.|..++..|++.++...
T Consensus 802 nP~ltL~iLe~~~~~~~ 818 (1010)
T KOG1991|consen 802 NPKLTLGILENQGFLNN 818 (1010)
T ss_pred CcHHHHHHHHHcCCccc
Confidence 44455666667776543
No 22
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.20 E-value=0.33 Score=57.23 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=4.3
Q ss_pred HHHHHHhCCCC
Q 009590 26 KVKKILQKIDG 36 (531)
Q Consensus 26 KVEKaL~ki~G 36 (531)
.+|-++....|
T Consensus 751 Lle~iiL~~kg 761 (1010)
T KOG1991|consen 751 LLEVIILNCKG 761 (1010)
T ss_pred HHHHHHHHhcC
Confidence 33444443333
No 23
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=86.70 E-value=0.29 Score=49.87 Aligned_cols=7 Identities=29% Similarity=0.169 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 009590 59 VLIKKLA 65 (531)
Q Consensus 59 ~Ii~aI~ 65 (531)
.|...|.
T Consensus 58 dlr~eLe 64 (244)
T PF04889_consen 58 DLRAELE 64 (244)
T ss_pred HHHHHHH
Confidence 4444443
No 24
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.69 E-value=6.1 Score=34.72 Aligned_cols=66 Identities=27% Similarity=0.336 Sum_probs=40.8
Q ss_pred cceEEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEe-----e--cCCCeEEEEe-cCCHHHHHHHHHHcCCceEE
Q 009590 8 KIQTYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSI-----D--SEQGKVTVSG-NVDPSVLIKKLAKSGKHAEL 73 (531)
Q Consensus 8 ~~~kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsV-----d--l~~gkVtV~g-~v~pd~Ii~aI~kaGy~A~l 73 (531)
..++++|.| --+..--...+.+.|++++||..|.+ | ...-+++|++ +++.++|.+.|++.|..++.
T Consensus 4 ~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHS 78 (97)
T COG1888 4 GIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHS 78 (97)
T ss_pred cceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeee
Confidence 356677777 22322233355566777777644432 2 3344455554 58999999999999986543
No 25
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.23 E-value=0.82 Score=52.36 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=11.8
Q ss_pred ccHHHHHHHHHHHhCCCCeeEEE
Q 009590 19 HCDGCKHKVKKILQKIDGVFTTS 41 (531)
Q Consensus 19 ~C~~Ca~KVEKaL~ki~GV~svs 41 (531)
+|-+|.-..+..++.+-|+..++
T Consensus 94 ~~l~~lgd~~~lIr~tvGivITT 116 (885)
T KOG2023|consen 94 ECLHGLGDASPLIRATVGIVITT 116 (885)
T ss_pred HHHhhccCchHHHHhhhhheeee
Confidence 45555555555555555554333
No 26
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=80.28 E-value=5.2 Score=32.14 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=38.4
Q ss_pred EEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec--CCHHHHHHHHHHcCCceEEcC
Q 009590 13 VLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSGKHAELWG 75 (531)
Q Consensus 13 ~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~--v~pd~Ii~aI~kaGy~A~l~~ 75 (531)
+|.+ +..|+.+..++.++|.+++- ...++|..+ .+.+.|...+++.||++..+.
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~ 58 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDPAAVEDIPRWCEENGYEVVEVE 58 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESSTTHHHHHHHHHHHHTEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 4566 78999999999999998732 234445432 456789999999999865443
No 27
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.79 E-value=1.4 Score=42.97 Aligned_cols=13 Identities=23% Similarity=0.578 Sum_probs=9.4
Q ss_pred ccHHHHHHHHHHH
Q 009590 19 HCDGCKHKVKKIL 31 (531)
Q Consensus 19 ~C~~Ca~KVEKaL 31 (531)
-|..|...|+=.+
T Consensus 44 VCqRCkEqieWk~ 56 (227)
T KOG3241|consen 44 VCQRCKEQIEWKR 56 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 5888888776554
No 28
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=76.15 E-value=13 Score=36.19 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCCeeEEEeecCCCe-------------------EEEEe---cCCHHHHHHHHHH
Q 009590 21 DGCKHKVKKILQKIDGVFTTSIDSEQGK-------------------VTVSG---NVDPSVLIKKLAK 66 (531)
Q Consensus 21 ~~Ca~KVEKaL~ki~GV~svsVdl~~gk-------------------VtV~g---~v~pd~Ii~aI~k 66 (531)
..|-+-+|..+.+++||.++++-+..+. |.|+. .|+.++|++..-+
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~ 77 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQ 77 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHH
Confidence 6788889999999999999998776654 44443 3677777776643
No 29
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=75.00 E-value=2.6 Score=43.08 Aligned_cols=14 Identities=0% Similarity=0.382 Sum_probs=6.7
Q ss_pred HHHHHHHHhCCCCe
Q 009590 24 KHKVKKILQKIDGV 37 (531)
Q Consensus 24 a~KVEKaL~ki~GV 37 (531)
...|+.+|.+|..|
T Consensus 6 ~qLI~~lf~RL~~a 19 (247)
T PF09849_consen 6 RQLIDDLFSRLKQA 19 (247)
T ss_pred HHHHHHHHHHHHhc
Confidence 34455555554443
No 30
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=73.81 E-value=19 Score=38.27 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=15.6
Q ss_pred EEEccccHHH--HHHHHHHHhCC
Q 009590 14 LKVNIHCDGC--KHKVKKILQKI 34 (531)
Q Consensus 14 LkVgM~C~~C--a~KVEKaL~ki 34 (531)
..|.++|..| ..+|+++|.+.
T Consensus 187 a~iel~c~~~dGIe~IK~aL~~~ 209 (319)
T PTZ00248 187 ADIEVSCFDYEGIDAVKEALIAG 209 (319)
T ss_pred EEEEEEeCCCchHHHHHHHHHHH
Confidence 3347889877 78889998764
No 31
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=72.82 E-value=2 Score=49.98 Aligned_cols=21 Identities=10% Similarity=0.021 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhCCCCeeEEE
Q 009590 21 DGCKHKVKKILQKIDGVFTTS 41 (531)
Q Consensus 21 ~~Ca~KVEKaL~ki~GV~svs 41 (531)
++|.-.|.++|...+.+++.-
T Consensus 594 ~G~l~Llsel~Karp~l~~lv 614 (988)
T KOG2038|consen 594 CGILFLLSELLKARPTLRKLV 614 (988)
T ss_pred HhHHHHHHHHHHhcchHHHHh
Confidence 457777777777766654433
No 32
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=72.41 E-value=2.2 Score=49.68 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.7
Q ss_pred CCCCCe
Q 009590 275 GGPMPV 280 (531)
Q Consensus 275 ~~~~p~ 280 (531)
..+.||
T Consensus 960 ~~d~pv 965 (988)
T KOG2038|consen 960 LNDSPV 965 (988)
T ss_pred cccchh
Confidence 344444
No 33
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=70.91 E-value=21 Score=31.66 Aligned_cols=63 Identities=24% Similarity=0.339 Sum_probs=40.3
Q ss_pred ceEEEEEEc-cccHHHHHHHHHHHhCCCCeeEEEee-----cCCCeE--EEEe-cCCHHHHHHHHHHcCCceE
Q 009590 9 IQTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSID-----SEQGKV--TVSG-NVDPSVLIKKLAKSGKHAE 72 (531)
Q Consensus 9 ~~kv~LkVg-M~C~~Ca~KVEKaL~ki~GV~svsVd-----l~~gkV--tV~g-~v~pd~Ii~aI~kaGy~A~ 72 (531)
.++++|.|- -|-+.- -.+.+.|.+++||..+++. .+...+ +|++ +++.++|.++|++.|-.+.
T Consensus 4 irRlVLDVlKP~~p~i-~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IH 75 (95)
T PF02680_consen 4 IRRLVLDVLKPHEPSI-VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIH 75 (95)
T ss_dssp EEEEEEEEEEESSS-H-HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEE
T ss_pred eeEEEEEeecCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEE
Confidence 466777772 244443 3667788999998766543 333333 3445 4999999999999997654
No 34
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=70.00 E-value=3 Score=41.87 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=20.1
Q ss_pred eeEEEeecCCCeEEEE--ecCCHHHHHHHHHHcCC
Q 009590 37 VFTTSIDSEQGKVTVS--GNVDPSVLIKKLAKSGK 69 (531)
Q Consensus 37 V~svsVdl~~gkVtV~--g~v~pd~Ii~aI~kaGy 69 (531)
|..+-||.....-.|. ..|+.+.|+..+.+...
T Consensus 85 ~FyliIDr~~~~enV~fLn~VdE~DLl~l~e~~~~ 119 (218)
T PF14283_consen 85 TFYLIIDRDEEGENVYFLNQVDEADLLALMEEEEE 119 (218)
T ss_pred EEEEEEecCCCcceEEEeccCCHHHHHHHHhccCC
Confidence 4555555544433444 34788888888876554
No 35
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=68.58 E-value=2.4 Score=49.23 Aligned_cols=11 Identities=0% Similarity=0.193 Sum_probs=4.9
Q ss_pred CHHHHHHHHHH
Q 009590 56 DPSVLIKKLAK 66 (531)
Q Consensus 56 ~pd~Ii~aI~k 66 (531)
+-+.+-++|+.
T Consensus 764 ~d~~~sRqIKS 774 (911)
T PF05086_consen 764 SDRSISRQIKS 774 (911)
T ss_pred cchhhhhhcce
Confidence 33444445543
No 36
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=67.32 E-value=3.6 Score=39.33 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=4.0
Q ss_pred cCCCeEEEE
Q 009590 44 SEQGKVTVS 52 (531)
Q Consensus 44 l~~gkVtV~ 52 (531)
+-...++|.
T Consensus 42 LGn~~f~V~ 50 (155)
T PTZ00329 42 LGNGRLEAY 50 (155)
T ss_pred cCCCEEEEE
Confidence 334444443
No 37
>PRK11018 hypothetical protein; Provisional
Probab=66.02 E-value=24 Score=29.57 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=39.2
Q ss_pred EEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe--cCCHHHHHHHHHHcCCceEE
Q 009590 12 YVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAEL 73 (531)
Q Consensus 12 v~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g--~v~pd~Ii~aI~kaGy~A~l 73 (531)
.+|.+ +..|+.-.-+++++|.++.- ...++|.. ..+.+.|...+++.|+++..
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~~a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLD 64 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 45677 79999999999999998742 23344443 24667888899999998753
No 38
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=63.14 E-value=52 Score=28.56 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe-cCCHHHHHHHHHH
Q 009590 21 DGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG-NVDPSVLIKKLAK 66 (531)
Q Consensus 21 ~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g-~v~pd~Ii~aI~k 66 (531)
+.-...|.+.|..++++.-...+.+.+|+.|+- ..+.+++++.|+.
T Consensus 16 Pe~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~~ 62 (87)
T PRK10553 16 SERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIES 62 (87)
T ss_pred hHHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHHH
Confidence 444778999999999998888888888888763 3455655555544
No 39
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=62.32 E-value=20 Score=36.04 Aligned_cols=28 Identities=21% Similarity=0.533 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHhCCCCeeEEEeecCCC
Q 009590 20 CDGCKHKVKKILQKIDGVFTTSIDSEQG 47 (531)
Q Consensus 20 C~~Ca~KVEKaL~ki~GV~svsVdl~~g 47 (531)
-..|-+-+|..+.+++||.+++|-+..+
T Consensus 51 agGCFWg~E~~F~~l~GV~~t~vGYagG 78 (213)
T PRK00058 51 GMGCFWGAERLFWQLPGVYSTAVGYAGG 78 (213)
T ss_pred EccCcchhHHHHhcCCCEEEEEeeecCC
Confidence 4678889999999999999999987744
No 40
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=62.18 E-value=2.5 Score=40.49 Aligned_cols=7 Identities=43% Similarity=1.151 Sum_probs=0.0
Q ss_pred CCCeeec
Q 009590 277 PMPVQVN 283 (531)
Q Consensus 277 ~~p~~~~ 283 (531)
+||+.++
T Consensus 93 ~iP~~~~ 99 (170)
T PF04050_consen 93 PIPMNVK 99 (170)
T ss_dssp -------
T ss_pred ccCcccc
Confidence 3444444
No 41
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=61.00 E-value=4.6 Score=45.14 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCCC
Q 009590 514 PGYTHFFSDENTS 526 (531)
Q Consensus 514 ~~~~~~f~den~~ 526 (531)
.+++||| |+.++
T Consensus 489 ~swn~yf-~~~~~ 500 (507)
T PF11702_consen 489 SSWNQYF-DYGPW 500 (507)
T ss_pred cchhhhh-ccCCc
Confidence 4678899 65444
No 42
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=59.95 E-value=8.3 Score=39.53 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHhCCCC
Q 009590 20 CDGCKHKVKKILQKIDG 36 (531)
Q Consensus 20 C~~Ca~KVEKaL~ki~G 36 (531)
....+..|...|.+-+.
T Consensus 25 D~eAe~lI~~~~~~qP~ 41 (247)
T PF09849_consen 25 DPEAEALIAQALARQPD 41 (247)
T ss_pred CHHHHHHHHHHHHhCCc
Confidence 44556677777776654
No 43
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=59.31 E-value=8.1 Score=32.87 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=5.8
Q ss_pred ccccCCCCCCCCC
Q 009590 179 KAVKFNIPDDDED 191 (531)
Q Consensus 179 ~~~~~~~~~dddd 191 (531)
.....+.+.|+++
T Consensus 37 ~~lDYdyDSd~EW 49 (77)
T PF12253_consen 37 PNLDYDYDSDDEW 49 (77)
T ss_pred cccceecCCcccc
Confidence 4444444444443
No 44
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=58.87 E-value=17 Score=29.29 Aligned_cols=32 Identities=13% Similarity=0.461 Sum_probs=21.0
Q ss_pred EEEEEEccccHHH------HHHHHHHHhCCCCeeEEEe
Q 009590 11 TYVLKVNIHCDGC------KHKVKKILQKIDGVFTTSI 42 (531)
Q Consensus 11 kv~LkVgM~C~~C------a~KVEKaL~ki~GV~svsV 42 (531)
++.|.|.+.++.| ...|+++|+.+++|.+|+|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3555665555555 5678888999999988875
No 45
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=57.90 E-value=7.2 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=15.2
Q ss_pred Eccc-cHHHHHHHHHHHhCCCCe
Q 009590 16 VNIH-CDGCKHKVKKILQKIDGV 37 (531)
Q Consensus 16 VgM~-C~~Ca~KVEKaL~ki~GV 37 (531)
|.+. ..-|+.+|-..|.+-..|
T Consensus 6 v~~dvDalcA~kiL~~Llk~d~I 28 (622)
T PF02724_consen 6 VALDVDALCACKILTSLLKSDNI 28 (622)
T ss_pred EcCChHHHHHHHHHHHHHHhcCC
Confidence 4443 356888888888777666
No 46
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=57.56 E-value=8.1 Score=44.42 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=9.8
Q ss_pred EEEEE-ccccHHHHHHHHHHH
Q 009590 12 YVLKV-NIHCDGCKHKVKKIL 31 (531)
Q Consensus 12 v~LkV-gM~C~~Ca~KVEKaL 31 (531)
|.|+| .+.+..+..++-+.+
T Consensus 28 I~~~l~PV~gy~el~~~~~~~ 48 (622)
T PF02724_consen 28 IQYSLVPVSGYSELERAYEEL 48 (622)
T ss_pred CCeeEEEeCCHHHHHHHHHHH
Confidence 34555 455555554444443
No 47
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=56.98 E-value=9.5 Score=42.48 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=5.4
Q ss_pred CHHHHHHHHHHc
Q 009590 56 DPSVLIKKLAKS 67 (531)
Q Consensus 56 ~pd~Ii~aI~ka 67 (531)
-|+.+|..|..+
T Consensus 79 YPelqitnV~ea 90 (615)
T KOG3540|consen 79 YPELQITNVVEA 90 (615)
T ss_pred ChHHHHHHHHHh
Confidence 444444444433
No 48
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=56.35 E-value=30 Score=27.56 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=34.6
Q ss_pred EEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe--cCCHHHHHHHHHHcCCceE
Q 009590 14 LKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAE 72 (531)
Q Consensus 14 LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g--~v~pd~Ii~aI~kaGy~A~ 72 (531)
|.+ ++.|+.-.-+++++| ++.. .+.++|.. ..+.+.|.+.+++.||+++
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~~~G~~~~ 53 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAESRGYEVS 53 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHHHcCCEEE
Confidence 344 689999999999999 5421 23344443 2456788889999999874
No 49
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=56.33 E-value=32 Score=32.92 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCCCeeEEEeecCCC
Q 009590 21 DGCKHKVKKILQKIDGVFTTSIDSEQG 47 (531)
Q Consensus 21 ~~Ca~KVEKaL~ki~GV~svsVdl~~g 47 (531)
..|-+-+|..+.+++||.+++|-+..+
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG 34 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANG 34 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCC
Confidence 678888999999999999999876654
No 50
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=56.01 E-value=4.1 Score=41.34 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=4.8
Q ss_pred HHHHHHcCCc
Q 009590 61 IKKLAKSGKH 70 (531)
Q Consensus 61 i~aI~kaGy~ 70 (531)
+++|.++||.
T Consensus 16 akkLl~~GF~ 25 (232)
T PRK12766 16 AEALREAGFE 25 (232)
T ss_pred HHHHHHcCCC
Confidence 3444455554
No 51
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=54.55 E-value=16 Score=43.11 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=3.1
Q ss_pred cccCCCCC
Q 009590 180 AVKFNIPD 187 (531)
Q Consensus 180 ~~~~~~~~ 187 (531)
++.++..+
T Consensus 353 dvqlkvfd 360 (1102)
T KOG1924|consen 353 DVQLKVFD 360 (1102)
T ss_pred HHHHHHHh
Confidence 33333333
No 52
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=52.41 E-value=40 Score=27.33 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=38.0
Q ss_pred EEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe--cCCHHHHHHHHHHcCCceEEc
Q 009590 14 LKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAELW 74 (531)
Q Consensus 14 LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g--~v~pd~Ii~aI~kaGy~A~l~ 74 (531)
|.+ ++.|+.-.-+++++|.++.- ...++|.. ..+.+.|.+.+++.||++..+
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~ 56 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDPGFARDAQAWCKSTGNTLISL 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHHHcCCEEEEE
Confidence 345 68999999999999998742 23344443 356678888999999987643
No 53
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=50.60 E-value=63 Score=27.28 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCeeEEEeecCCCeEEEE-ecCCHHHHHHHHHHcC
Q 009590 23 CKHKVKKILQKIDGVFTTSIDSEQGKVTVS-GNVDPSVLIKKLAKSG 68 (531)
Q Consensus 23 Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~-g~v~pd~Ii~aI~kaG 68 (531)
-...|.++|..++||.-...+.. +|+.|+ ...+.+++++.|+++-
T Consensus 16 ~~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~~i~ 61 (79)
T PF03927_consen 16 RLEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLIDAIN 61 (79)
T ss_dssp CHHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHHHHC
T ss_pred hHHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHHHHH
Confidence 45688899999999977777666 777766 3456677777776543
No 54
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=50.30 E-value=68 Score=26.99 Aligned_cols=53 Identities=8% Similarity=0.041 Sum_probs=38.6
Q ss_pred EEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe--cCCHHHHHHHHHHcCCceEE
Q 009590 12 YVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAEL 73 (531)
Q Consensus 12 v~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g--~v~pd~Ii~aI~kaGy~A~l 73 (531)
++|.+ ++.|+.-.-+++++|.+++- ...++|.. ..+.+.|...+++.|+++..
T Consensus 10 ~~lD~~Gl~CP~Pll~~kk~l~~l~~---------G~~l~V~~dd~~~~~di~~~~~~~G~~~~~ 65 (81)
T PRK00299 10 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPSFCRFMDHELLA 65 (81)
T ss_pred eEEecCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 45666 79999999999999998742 13344432 24667788888899998754
No 55
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=50.26 E-value=53 Score=26.55 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe--cCCHHHHHHHHHHcCCceEEc
Q 009590 17 NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAELW 74 (531)
Q Consensus 17 gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g--~v~pd~Ii~aI~kaGy~A~l~ 74 (531)
+..|+.-.-+++++|.+++- ...++|.. ..+.+.|...+++.||++...
T Consensus 6 G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~ 56 (69)
T cd03423 6 GLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDPSTTRDIPKFCTFLGHELLAQ 56 (69)
T ss_pred CCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCCchHHHHHHHHHHcCCEEEEE
Confidence 67899999999999998742 13344432 357778999999999987643
No 56
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=49.69 E-value=30 Score=34.05 Aligned_cols=28 Identities=25% Similarity=0.486 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCCCeeEEEeecCCCe
Q 009590 21 DGCKHKVKKILQKIDGVFTTSIDSEQGK 48 (531)
Q Consensus 21 ~~Ca~KVEKaL~ki~GV~svsVdl~~gk 48 (531)
..|-+-+|..+.+++||.+++|-+..+.
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~ 42 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGH 42 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCC
Confidence 6788888999999999999998877663
No 57
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=48.12 E-value=12 Score=42.10 Aligned_cols=6 Identities=33% Similarity=0.302 Sum_probs=3.5
Q ss_pred HHHHHH
Q 009590 467 MMNQQR 472 (531)
Q Consensus 467 mm~~q~ 472 (531)
..+||.
T Consensus 446 werqqk 451 (507)
T PF11702_consen 446 WERQQK 451 (507)
T ss_pred HHHHhh
Confidence 556664
No 58
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=46.61 E-value=11 Score=36.13 Aligned_cols=8 Identities=25% Similarity=0.302 Sum_probs=3.4
Q ss_pred HHHHHHhh
Q 009590 144 QLQHLQQI 151 (531)
Q Consensus 144 q~qq~qq~ 151 (531)
|...|...
T Consensus 99 evr~Lk~~ 106 (155)
T PTZ00329 99 EARALKQH 106 (155)
T ss_pred HHHHHHHc
Confidence 34444433
No 59
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=45.94 E-value=7.3 Score=40.18 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=5.3
Q ss_pred EEEeecCCCeEE
Q 009590 39 TTSIDSEQGKVT 50 (531)
Q Consensus 39 svsVdl~~gkVt 50 (531)
.++|-...+.+-
T Consensus 50 YATVre~~g~~y 61 (303)
T KOG3064|consen 50 YATVREENGVLY 61 (303)
T ss_pred ceeEeecCCEEE
Confidence 344444444443
No 60
>PHA03346 US22 family homolog; Provisional
Probab=45.86 E-value=13 Score=42.07 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=6.1
Q ss_pred cHHHHHHHHHHHh
Q 009590 20 CDGCKHKVKKILQ 32 (531)
Q Consensus 20 C~~Ca~KVEKaL~ 32 (531)
+..|...|...|.
T Consensus 234 l~~~~~~i~~RL~ 246 (520)
T PHA03346 234 LAECRMYITLRLR 246 (520)
T ss_pred HHHHHHHHHhhcc
Confidence 3444555554433
No 61
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=45.46 E-value=9.9 Score=42.96 Aligned_cols=12 Identities=0% Similarity=0.321 Sum_probs=4.7
Q ss_pred HHHHHHhCCCCe
Q 009590 26 KVKKILQKIDGV 37 (531)
Q Consensus 26 KVEKaL~ki~GV 37 (531)
.++..++.+-.|
T Consensus 21 qL~e~FS~vGPi 32 (678)
T KOG0127|consen 21 QLEEFFSYVGPI 32 (678)
T ss_pred HHHHhhhcccCc
Confidence 333444433333
No 62
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=45.40 E-value=60 Score=26.33 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe--cCCHHHHHHHHHHcCCceEEc
Q 009590 17 NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLAKSGKHAELW 74 (531)
Q Consensus 17 gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g--~v~pd~Ii~aI~kaGy~A~l~ 74 (531)
+..|+.-.-+++++|+++.- ...++|.. ..+.+.|.+.+++.|+++...
T Consensus 6 G~~CP~Pvi~~kkal~~l~~---------G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 6 GEPCPYPAIATLEALPSLKP---------GEILEVISDCPQSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred CCcCCHHHHHHHHHHHcCCC---------CCEEEEEecCchHHHHHHHHHHHcCCEEEEE
Confidence 67899999999999998742 23344433 357778888999999987643
No 63
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=45.24 E-value=68 Score=25.26 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=35.8
Q ss_pred ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec--CCHHHHHHHHHHcCCceEEc
Q 009590 17 NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSGKHAELW 74 (531)
Q Consensus 17 gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~--v~pd~Ii~aI~kaGy~A~l~ 74 (531)
++.|+.-..++.++|.++.. ...++|..+ .+...|.+.+++.||++..+
T Consensus 6 g~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~ 56 (69)
T cd00291 6 GLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDPGAVEDIPAWAKETGHEVLEV 56 (69)
T ss_pred CCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCCcHHHHHHHHHHHcCCEEEEE
Confidence 67899999999999988632 233444432 46788899999999986543
No 64
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=44.08 E-value=12 Score=42.37 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=4.9
Q ss_pred HHHHHHHHhCC
Q 009590 24 KHKVKKILQKI 34 (531)
Q Consensus 24 a~KVEKaL~ki 34 (531)
...+.++|..+
T Consensus 57 ~ED~qrA~~e~ 67 (678)
T KOG0127|consen 57 EEDVQRALAET 67 (678)
T ss_pred HhHHHHHHHHh
Confidence 34444444443
No 65
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=43.28 E-value=21 Score=33.27 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.4
Q ss_pred ccHHHHHHH
Q 009590 19 HCDGCKHKV 27 (531)
Q Consensus 19 ~C~~Ca~KV 27 (531)
+|+.|..|.
T Consensus 11 ~Cp~cg~kF 19 (129)
T TIGR02300 11 ICPNTGSKF 19 (129)
T ss_pred cCCCcCccc
Confidence 355555443
No 66
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=43.27 E-value=52 Score=31.10 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEE
Q 009590 19 HCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS 52 (531)
Q Consensus 19 ~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~ 52 (531)
.-..-+.+|++.|.++++|..+.|-.....+.|.
T Consensus 72 ~~~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Va 105 (177)
T PF09580_consen 72 DRQQLADRIANRVKKVPGVEDATVVVTDDNAYVA 105 (177)
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEEEECCEEEEE
Confidence 3456688999999999999999998888888775
No 67
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Probab=43.11 E-value=13 Score=44.29 Aligned_cols=12 Identities=25% Similarity=0.074 Sum_probs=4.7
Q ss_pred HhCCCCeeEEEe
Q 009590 31 LQKIDGVFTTSI 42 (531)
Q Consensus 31 L~ki~GV~svsV 42 (531)
|..++-|..+++
T Consensus 16 ~~~~~~~~~~~~ 27 (844)
T PTZ00482 16 LYEIPFVGSLRL 27 (844)
T ss_pred hhccccceeeee
Confidence 333444433333
No 68
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=42.75 E-value=1.4e+02 Score=26.11 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=37.8
Q ss_pred ceEEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEecC---CHHHHHHHHHHc
Q 009590 9 IQTYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNV---DPSVLIKKLAKS 67 (531)
Q Consensus 9 ~~kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~v---~pd~Ii~aI~ka 67 (531)
+.++++.| + .-|-.-...+++....+ +|.-+--|+.+++|+|...- ..+++++.|++-
T Consensus 3 ~~~~~~~V~GrVQGVGFR~~~~~~A~~l-gl~G~V~N~~DGsVeiva~G~~~~v~~~~~~l~~g 65 (92)
T COG1254 3 MVRARARVYGRVQGVGFRYFTRSEALRL-GLTGWVKNLDDGSVEIVAEGPDEAVEKFIEWLRKG 65 (92)
T ss_pred cEEEEEEEEEEeccccHHHHHHHHHHHC-CCEEEEEECCCCeEEEEEEcCHHHHHHHHHHHHhC
Confidence 34556666 3 56666666666665554 58778889999999887532 345556666544
No 69
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=40.68 E-value=31 Score=32.89 Aligned_cols=8 Identities=50% Similarity=1.157 Sum_probs=5.1
Q ss_pred CCCCCCCC
Q 009590 496 QHPYPPYP 503 (531)
Q Consensus 496 p~Py~~y~ 503 (531)
|+||+++.
T Consensus 130 PPpYsp~~ 137 (155)
T PF10873_consen 130 PPPYSPTP 137 (155)
T ss_pred CcCCCCcc
Confidence 56677764
No 70
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=40.59 E-value=58 Score=31.03 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=29.9
Q ss_pred eEEEEEEc-cccHHHHHHHHHHHhCCCCeeEEEeecC-CCeEEE
Q 009590 10 QTYVLKVN-IHCDGCKHKVKKILQKIDGVFTTSIDSE-QGKVTV 51 (531)
Q Consensus 10 ~kv~LkVg-M~C~~Ca~KVEKaL~ki~GV~svsVdl~-~gkVtV 51 (531)
..+++.|+ -.|..|..-|...++++ |+.+++|... ++++.+
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVYY 142 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEEE
Confidence 44677784 68999998888887765 7887887766 665443
No 71
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=40.55 E-value=58 Score=31.08 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCCeeEEEeecCCC
Q 009590 21 DGCKHKVKKILQKIDGVFTTSIDSEQG 47 (531)
Q Consensus 21 ~~Ca~KVEKaL~ki~GV~svsVdl~~g 47 (531)
..|-+.+|.++.+++||.+++|-+..+
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG 33 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGG 33 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESS
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCC
Confidence 568888999999999999999876544
No 72
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=40.45 E-value=63 Score=33.91 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHhCCCCeeEEEeecCCC
Q 009590 20 CDGCKHKVKKILQKIDGVFTTSIDSEQG 47 (531)
Q Consensus 20 C~~Ca~KVEKaL~ki~GV~svsVdl~~g 47 (531)
...|-+.+|..+.+++||.+++|-+..+
T Consensus 133 agGCFWg~E~~F~~~~GV~~t~vGYagG 160 (283)
T PRK05550 133 AGGCFWGVEYYFKKLPGVLSVESGYTGG 160 (283)
T ss_pred ecCCchhhhhhHhhCcCEEEEEEeeCCC
Confidence 4788899999999999999999877655
No 73
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=40.36 E-value=91 Score=25.74 Aligned_cols=61 Identities=25% Similarity=0.399 Sum_probs=40.1
Q ss_pred EEEEEccccHHHHHHHHHHHhCC---CCeeEEEeecCCCeEEEE--ecCCHHHHHHHHHH-cCCceE
Q 009590 12 YVLKVNIHCDGCKHKVKKILQKI---DGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAK-SGKHAE 72 (531)
Q Consensus 12 v~LkVgM~C~~Ca~KVEKaL~ki---~GV~svsVdl~~gkVtV~--g~v~pd~Ii~aI~k-aGy~A~ 72 (531)
+.++|.-.-..-..++.++|.++ +-...+.+|.+++.+.|. +.+..+.++..|++ .+.+++
T Consensus 6 ~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~ 72 (75)
T PF14492_consen 6 LSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVE 72 (75)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEE
T ss_pred EEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeE
Confidence 34455333455566676776665 334688899888988887 46788888888864 455443
No 74
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.15 E-value=19 Score=32.80 Aligned_cols=9 Identities=11% Similarity=-0.167 Sum_probs=4.6
Q ss_pred ccHHHHHHH
Q 009590 19 HCDGCKHKV 27 (531)
Q Consensus 19 ~C~~Ca~KV 27 (531)
.|+.|.+|.
T Consensus 11 idPetg~KF 19 (129)
T COG4530 11 IDPETGKKF 19 (129)
T ss_pred cCccccchh
Confidence 355555444
No 75
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=38.99 E-value=21 Score=41.29 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHHHhCCCCe
Q 009590 18 IHCDGCKHKVKKILQKIDGV 37 (531)
Q Consensus 18 M~C~~Ca~KVEKaL~ki~GV 37 (531)
..|..-+..|.+.+.++.--
T Consensus 366 ~rkkr~~aei~Kffqk~~~k 385 (811)
T KOG4364|consen 366 LRKKRHEAEIGKFFQKIDNK 385 (811)
T ss_pred HHHHHHHHHHHhhhcccccc
Confidence 45666677777777766543
No 76
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=38.41 E-value=1.8e+02 Score=23.45 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=25.3
Q ss_pred ccccHHHHHHHHHHHh---CC--CCeeEEEeecCCCeEEEEecC-CHHHHHHHHHHcCCceEE
Q 009590 17 NIHCDGCKHKVKKILQ---KI--DGVFTTSIDSEQGKVTVSGNV-DPSVLIKKLAKSGKHAEL 73 (531)
Q Consensus 17 gM~C~~Ca~KVEKaL~---ki--~GV~svsVdl~~gkVtV~g~v-~pd~Ii~aI~kaGy~A~l 73 (531)
..+|..|...+...-. ++ ..|.-+ .|..+. +++++...+++..+...+
T Consensus 28 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~~---------~v~~d~~~~~~~~~~~~~~~~~~~~ 81 (116)
T cd02966 28 ASWCPPCRAEMPELEALAKEYKDDGVEVV---------GVNVDDDDPAAVKAFLKKYGITFPV 81 (116)
T ss_pred cccChhHHHHhHHHHHHHHHhCCCCeEEE---------EEECCCCCHHHHHHHHHHcCCCcce
Confidence 6799999765433322 11 122211 222222 377888888777655443
No 77
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=38.17 E-value=19 Score=42.18 Aligned_cols=11 Identities=9% Similarity=-0.076 Sum_probs=5.6
Q ss_pred ccccccceeec
Q 009590 86 LPNQFKNMQLD 96 (531)
Q Consensus 86 ~~~q~~~l~I~ 96 (531)
-.+.|+.++|=
T Consensus 797 ~lKnfDmvfIf 807 (960)
T KOG1189|consen 797 GLKNFDMVFIF 807 (960)
T ss_pred ccccceEEEEe
Confidence 34555555553
No 78
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.97 E-value=19 Score=39.95 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 009590 501 PYPYPQHPYPPQDPGYTHFF 520 (531)
Q Consensus 501 ~y~y~~p~~~p~~~~~~~~f 520 (531)
||.|++|||+++..|.+-+|
T Consensus 456 P~~~~pppP~~pp~p~~~~~ 475 (483)
T KOG2236|consen 456 PHQQSPPPPPPPPPPNSPMN 475 (483)
T ss_pred ccccCCCCCCCCCCCCChhh
Confidence 44444443333334444444
No 79
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=37.72 E-value=19 Score=33.41 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHH
Q 009590 55 VDPSVLIKKLAK 66 (531)
Q Consensus 55 v~pd~Ii~aI~k 66 (531)
++...|+..|.+
T Consensus 20 m~f~dL~~ev~~ 31 (129)
T PRK02363 20 MSFYDLVNEIQK 31 (129)
T ss_pred ccHHHHHHHHHH
Confidence 455556655543
No 80
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=37.51 E-value=1.2e+02 Score=26.79 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=32.7
Q ss_pred EEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec--CCHHHHHHHHHHc
Q 009590 12 YVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKS 67 (531)
Q Consensus 12 v~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~--v~pd~Ii~aI~ka 67 (531)
++|+| +++-+.+...|+.+|+....|..|++..-.....|+.. .+...++.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 35666 45555558999999999999999999887777888753 3456677777665
No 81
>PRK14425 acylphosphatase; Provisional
Probab=36.99 E-value=1.6e+02 Score=25.59 Aligned_cols=55 Identities=13% Similarity=0.229 Sum_probs=34.3
Q ss_pred EEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHH
Q 009590 11 TYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 11 kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~k 66 (531)
++.|.| + ..+-.....+.+...++ ++.-+.-|+.+++|+|... ...+++++.|++
T Consensus 7 ~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 7 AVRVRITGRVQGVGFRDWTRDEAERL-GLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred EEEEEEEEeEecccchHHHHHHHHHh-CCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 445555 3 45555555555554443 5666778899998887642 345667777775
No 82
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=36.74 E-value=97 Score=25.32 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=31.2
Q ss_pred HhCCCCeeEEEeecCCCeEEE--EecCCHHHHHHHHHHcCCceEEcCc
Q 009590 31 LQKIDGVFTTSIDSEQGKVTV--SGNVDPSVLIKKLAKSGKHAELWGA 76 (531)
Q Consensus 31 L~ki~GV~svsVdl~~gkVtV--~g~v~pd~Ii~aI~kaGy~A~l~~~ 76 (531)
|..+++|..+.... ...++| ....+..+|++.|...++ +.....
T Consensus 26 l~~~~~v~~v~~~~-~~~~~i~l~~~~~~~~ll~~l~~~g~-I~~f~~ 71 (84)
T PF13732_consen 26 LEELPGVESVEQDG-DGKLRIKLEDEETANELLQELIEKGI-IRSFEE 71 (84)
T ss_pred HhhCCCeEEEEEeC-CcEEEEEECCcccHHHHHHHHHhCCC-eeEEEE
Confidence 77889999887643 343444 445677899999999998 665443
No 83
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=36.34 E-value=1.4e+02 Score=26.76 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=42.7
Q ss_pred ceEEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEE--Eec-CCHHHHHHHHHHcCCceEEc
Q 009590 9 IQTYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTV--SGN-VDPSVLIKKLAKSGKHAELW 74 (531)
Q Consensus 9 ~~kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV--~g~-v~pd~Ii~aI~kaGy~A~l~ 74 (531)
..+|.|.| +--=.-|-++-.....+..||+-+-.+...++|.- ++. ...+++...|+..|..+..+
T Consensus 7 i~s~dfEvfGRVQGv~fr~~t~~~a~~lGlrGWv~Nt~~GtvkG~leGp~~~vd~mk~wl~~~gsP~s~I 76 (98)
T KOG3360|consen 7 IKSCDFEVFGRVQGVCFRKHTLDEAKKLGLRGWVMNTSEGTVKGQLEGPPEKVDEMKEWLLTRGSPVSAI 76 (98)
T ss_pred eEEEeEEEEeeeccchhhHHHHHHHHhhcceEEEEecCCceEEEEEeCCHHHHHHHHHHHHhcCChhHhe
Confidence 34455666 54455666666666666679988888888887763 332 34466677787777654433
No 84
>PRK14426 acylphosphatase; Provisional
Probab=36.30 E-value=1.8e+02 Score=25.13 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=33.4
Q ss_pred EEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHH
Q 009590 11 TYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 11 kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~k 66 (531)
++.+.| + ...-.....|.+...++ +|.-+--|+.+++|+|... ...+++++.|++
T Consensus 5 ~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 5 CIIAWVYGRVQGVGFRYHTQHEALKL-GLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred EEEEEEEEeeCCcCchHHHHHHHHHh-CCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 345555 3 45566666666655543 6666677888888887643 334556666654
No 85
>PF10628 CotE: Outer spore coat protein E (CotE); InterPro: IPR018901 CotE is a morphogenic protein that is required for the assembly of the outer coat of the endospore [] and spore resistance to lysozyme []. CotE also regulates the expression of cotA, cotB, cotC and other genes encoding spore outer coat proteins []. The timing of cotE expression has been shown in Bacillus subtilis to affect spore coat morphology but not lysozyme resistance [].
Probab=36.19 E-value=21 Score=35.02 Aligned_cols=11 Identities=9% Similarity=0.144 Sum_probs=5.6
Q ss_pred HHHHHHHHHHh
Q 009590 22 GCKHKVKKILQ 32 (531)
Q Consensus 22 ~Ca~KVEKaL~ 32 (531)
.|+..|.|++.
T Consensus 3 ~~REIITKAVc 13 (182)
T PF10628_consen 3 EYREIITKAVC 13 (182)
T ss_pred hHHHhhhhhee
Confidence 35555555543
No 86
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.06 E-value=26 Score=34.52 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHcC
Q 009590 55 VDPSVLIKKLAKSG 68 (531)
Q Consensus 55 v~pd~Ii~aI~kaG 68 (531)
+...+|...|..+.
T Consensus 61 V~~~eieE~L~~~l 74 (184)
T KOG4032|consen 61 VKAREIEELLLELL 74 (184)
T ss_pred hhHHHHHHHHHHHH
Confidence 45555555555444
No 87
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=35.50 E-value=22 Score=41.61 Aligned_cols=6 Identities=50% Similarity=0.650 Sum_probs=3.0
Q ss_pred CCeeec
Q 009590 278 MPVQVN 283 (531)
Q Consensus 278 ~p~~~~ 283 (531)
+-|||.
T Consensus 553 ~~~q~~ 558 (763)
T TIGR00993 553 VTVQVT 558 (763)
T ss_pred EEEEEe
Confidence 345555
No 88
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.03 E-value=31 Score=32.17 Aligned_cols=13 Identities=0% Similarity=-0.276 Sum_probs=8.7
Q ss_pred cccHHHHHHHHHH
Q 009590 18 IHCDGCKHKVKKI 30 (531)
Q Consensus 18 M~C~~Ca~KVEKa 30 (531)
+.|+.|...+...
T Consensus 27 ~vcP~cg~~~~~~ 39 (129)
T TIGR02300 27 AVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCCccCcc
Confidence 6888887655433
No 89
>PHA03283 envelope glycoprotein E; Provisional
Probab=35.00 E-value=27 Score=39.33 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=7.8
Q ss_pred cccccceeecCCCC
Q 009590 87 PNQFKNMQLDNGKG 100 (531)
Q Consensus 87 ~~q~~~l~I~~g~g 100 (531)
..+|.+.+++-...
T Consensus 351 ~~~~~Nvv~d~t~P 364 (542)
T PHA03283 351 AAHFMNVITDLTRP 364 (542)
T ss_pred hhhccceEeeccCC
Confidence 34556666665544
No 90
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=34.70 E-value=24 Score=39.25 Aligned_cols=50 Identities=28% Similarity=0.311 Sum_probs=35.8
Q ss_pred ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcCCce
Q 009590 17 NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 71 (531)
Q Consensus 17 gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaGy~A 71 (531)
.|.|..-...-.+.| .-| ++++.+..+|||++-+.+..|+++|++.||..
T Consensus 87 ~l~ctdg~lisl~~l---nkV--v~~dpe~~tvTV~aGirlrQLie~~~~~GlsL 136 (518)
T KOG4730|consen 87 KLVCTDGLLISLDKL---NKV--VEFDPELKTVTVQAGIRLRQLIEELAKLGLSL 136 (518)
T ss_pred cceeccccEEEhhhh---ccc--eeeCchhceEEeccCcCHHHHHHHHHhcCccc
Confidence 367776632223333 334 45577788899998899999999999999864
No 91
>PF14442 Bd3614_N: Bd3614-like deaminase N-terminal
Probab=34.52 E-value=24 Score=32.75 Aligned_cols=6 Identities=0% Similarity=0.412 Sum_probs=2.7
Q ss_pred HHHHHH
Q 009590 59 VLIKKL 64 (531)
Q Consensus 59 ~Ii~aI 64 (531)
.|++.|
T Consensus 41 avv~Lv 46 (138)
T PF14442_consen 41 AVVRLV 46 (138)
T ss_pred HHHHHH
Confidence 344444
No 92
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=33.11 E-value=25 Score=38.25 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 009590 21 DGCKHKVKKILQ 32 (531)
Q Consensus 21 ~~Ca~KVEKaL~ 32 (531)
-.|+.++...|.
T Consensus 66 ~yca~kLPdflK 77 (542)
T KOG0699|consen 66 KYCAAKLPDFLK 77 (542)
T ss_pred HHHHHhhhHHHH
Confidence 345554444443
No 93
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=33.02 E-value=30 Score=37.34 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=10.0
Q ss_pred cccHHHHHHHHHHHh-CCCCeeEEE
Q 009590 18 IHCDGCKHKVKKILQ-KIDGVFTTS 41 (531)
Q Consensus 18 M~C~~Ca~KVEKaL~-ki~GV~svs 41 (531)
-.-..|..+-...++ +..+|..+.
T Consensus 106 ~Q~A~cis~k~l~~r~k~a~v~~~q 130 (434)
T KOG3555|consen 106 YQTAGCISRKQLQHRQKAAGVSVIQ 130 (434)
T ss_pred cchhhhHHHHHHhhhccCCCcceec
Confidence 334556544333333 224454333
No 94
>PRK14440 acylphosphatase; Provisional
Probab=32.64 E-value=1.9e+02 Score=24.90 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=34.9
Q ss_pred eEEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHH
Q 009590 10 QTYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 10 ~kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~k 66 (531)
.++.|.| + ..+-.++..|.+...++ ++.-+--|+.+++|+|... ...+++++.|++
T Consensus 3 ~~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14440 3 KRMYARVYGLVQGVGFRKFVQIHAIRL-GIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 63 (90)
T ss_pred EEEEEEEEEeEeccCchHHHHHHHHHc-CCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 3455666 3 56666677776665554 4666667888888877643 344566667764
No 95
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=32.62 E-value=28 Score=39.29 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHcCCc
Q 009590 55 VDPSVLIKKLAKSGKH 70 (531)
Q Consensus 55 v~pd~Ii~aI~kaGy~ 70 (531)
++...++..|...++.
T Consensus 77 FDvRAhLdhi~~vd~t 92 (653)
T KOG2548|consen 77 FDVRAHLDHIPEVDST 92 (653)
T ss_pred hhhHhhhccCCccCCC
Confidence 3445555555555554
No 96
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=32.28 E-value=27 Score=40.47 Aligned_cols=11 Identities=9% Similarity=-0.009 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 009590 461 QYMAAAMMNQQR 472 (531)
Q Consensus 461 q~~~~~mm~~q~ 472 (531)
+|. +++.-||.
T Consensus 740 w~V-~~l~~Fq~ 750 (811)
T KOG4364|consen 740 WKV-RELSDFQD 750 (811)
T ss_pred HHH-HHHHhccc
Confidence 344 35555554
No 97
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=31.98 E-value=57 Score=28.42 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=30.0
Q ss_pred EEEccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe---cCCHHHHHHHHHHcCCceE
Q 009590 14 LKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG---NVDPSVLIKKLAKSGKHAE 72 (531)
Q Consensus 14 LkVgM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g---~v~pd~Ii~aI~kaGy~A~ 72 (531)
|+++-...-.+..+.=.|++.++|++|-++--+....|.. .++.++|++.|++...+++
T Consensus 3 lkfg~It~eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi 64 (88)
T PF11491_consen 3 LKFGNITPEEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVI 64 (88)
T ss_dssp EE--S-TTTTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS
T ss_pred cccCCCCHHHHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhhe
Confidence 4453222334456666789999999999997777776653 4789999999999888754
No 98
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.51 E-value=24 Score=32.23 Aligned_cols=7 Identities=29% Similarity=0.287 Sum_probs=5.0
Q ss_pred HcCCceE
Q 009590 66 KSGKHAE 72 (531)
Q Consensus 66 kaGy~A~ 72 (531)
|+||.+.
T Consensus 52 K~GyEV~ 58 (135)
T COG3076 52 KLGYEVT 58 (135)
T ss_pred hhcceec
Confidence 7888764
No 99
>PHA03283 envelope glycoprotein E; Provisional
Probab=31.49 E-value=33 Score=38.74 Aligned_cols=6 Identities=0% Similarity=0.246 Sum_probs=2.2
Q ss_pred HHHHHH
Q 009590 59 VLIKKL 64 (531)
Q Consensus 59 ~Ii~aI 64 (531)
.++.+|
T Consensus 353 ~~~Nvv 358 (542)
T PHA03283 353 HFMNVI 358 (542)
T ss_pred hccceE
Confidence 333333
No 100
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.45 E-value=3.1e+02 Score=22.87 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=34.9
Q ss_pred EEEcc-ccHHHHHHHHHHHhCCCCeeEEEeec---CCCeEEEEe-cCC----HHHHHHHHHHcCCceEEcCc
Q 009590 14 LKVNI-HCDGCKHKVKKILQKIDGVFTTSIDS---EQGKVTVSG-NVD----PSVLIKKLAKSGKHAELWGA 76 (531)
Q Consensus 14 LkVgM-~C~~Ca~KVEKaL~ki~GV~svsVdl---~~gkVtV~g-~v~----pd~Ii~aI~kaGy~A~l~~~ 76 (531)
|+|.+ .-++-..++-.+|. -..|..+..+. ...+|.|.- ..+ .++|++.|++.||+++.+..
T Consensus 4 l~v~ipD~PG~L~~ll~~l~-~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~ 74 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIG-PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAGYEVVDLSD 74 (85)
T ss_pred EEEecCCCCcHHHHHHHHhC-CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEECCC
Confidence 44433 33444555666666 23455555443 233444432 123 67889999999998876543
No 101
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=30.65 E-value=1.8e+02 Score=24.45 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=35.6
Q ss_pred EEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec--CCHHHHHHHHHHcC-Cce
Q 009590 11 TYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN--VDPSVLIKKLAKSG-KHA 71 (531)
Q Consensus 11 kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~--v~pd~Ii~aI~kaG-y~A 71 (531)
..+|.+ ++.|+.-.-.++++|.+++- ...++|..+ .+.+.|...+++.+ +..
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~~---------Ge~LeV~~ddp~~~~dIp~~~~~~~~~~l 60 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLKP---------GEILEVIADDPAAKEDIPAWAKKEGGHEL 60 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCCC---------CCEEEEEecCcchHHHHHHHHHHcCCcEE
Confidence 446778 89999999999999998742 234445432 35566777777555 543
No 102
>PRK14448 acylphosphatase; Provisional
Probab=30.54 E-value=2.4e+02 Score=24.23 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=32.5
Q ss_pred EEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHH
Q 009590 11 TYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 11 kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~k 66 (531)
+++|.| + ..+-.-...|.+...++ ++.-+.-|+.+++|+|... ...+++++.|++
T Consensus 3 ~~~~~v~G~VQGVGFR~~v~~~A~~l-gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 62 (90)
T PRK14448 3 KKQFIVYGHVQGVGFRYFTWQEATKI-GIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQH 62 (90)
T ss_pred EEEEEEEEeecCcchHHHHHHHHHHh-CCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHHh
Confidence 445555 3 44555555555554433 5666667888888887643 345566667754
No 103
>smart00362 RRM_2 RNA recognition motif.
Probab=30.08 E-value=2.2e+02 Score=20.74 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=34.6
Q ss_pred EEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCC----CeEEEEecCCHHHHHHHHHHc
Q 009590 14 LKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQ----GKVTVSGNVDPSVLIKKLAKS 67 (531)
Q Consensus 14 LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~----gkVtV~g~v~pd~Ii~aI~ka 67 (531)
|.| ++.+......|++.|+..-.|..+.+.... ..+.|+.. +.+....+|+..
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~-~~~~a~~a~~~~ 59 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFE-SEEDAEKAIEAL 59 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeC-CHHHHHHHHHHh
Confidence 345 566667778889999888778887776654 55556543 445555555543
No 104
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.59 E-value=94 Score=31.62 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=27.4
Q ss_pred eEEEEEE--ccccHHH---HHHHHHHHhCCCCeeEEEeecCCCeE
Q 009590 10 QTYVLKV--NIHCDGC---KHKVKKILQKIDGVFTTSIDSEQGKV 49 (531)
Q Consensus 10 ~kv~LkV--gM~C~~C---a~KVEKaL~ki~GV~svsVdl~~gkV 49 (531)
.+++|.| ++.|+-| +.+++++|...+.-..+++.+..-.+
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l 48 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFEL 48 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEeccccc
Confidence 3455555 7899999 67888888888754466666554433
No 105
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.13 E-value=34 Score=33.68 Aligned_cols=7 Identities=57% Similarity=0.681 Sum_probs=2.8
Q ss_pred HHHHHhC
Q 009590 27 VKKILQK 33 (531)
Q Consensus 27 VEKaL~k 33 (531)
|.++|.+
T Consensus 17 vg~il~~ 23 (184)
T KOG4032|consen 17 VGKILNS 23 (184)
T ss_pred HHHHHHc
Confidence 3344443
No 106
>PF10991 DUF2815: Protein of unknown function (DUF2815); InterPro: IPR022595 This entry is represented by Bacteriophage APSE-1, protein 50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.29 E-value=24 Score=34.60 Aligned_cols=6 Identities=0% Similarity=0.157 Sum_probs=2.2
Q ss_pred HHHHHH
Q 009590 59 VLIKKL 64 (531)
Q Consensus 59 ~Ii~aI 64 (531)
.|.++|
T Consensus 46 ~I~~Ai 51 (181)
T PF10991_consen 46 AIKAAI 51 (181)
T ss_pred HHHHHH
Confidence 333333
No 107
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=28.28 E-value=7.6e+02 Score=26.46 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred cchhcccceEEEEEE-ccccHHHHHHHHHHHhCCCCeeEEEeecCC------CeEEEEecCCHHHHHHHHHHcCCceEEc
Q 009590 2 SKEEFMKIQTYVLKV-NIHCDGCKHKVKKILQKIDGVFTTSIDSEQ------GKVTVSGNVDPSVLIKKLAKSGKHAELW 74 (531)
Q Consensus 2 ske~~~~~~kv~LkV-gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~------gkVtV~g~v~pd~Ii~aI~kaGy~A~l~ 74 (531)
++.........+|-| +|.-...+..|++++.+.-.|..++|-... ..+.|+.. +.++..++|+++--...
T Consensus 184 a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~-~~e~A~~Ai~~lng~~~-- 260 (346)
T TIGR01659 184 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFN-KREEAQEAISALNNVIP-- 260 (346)
T ss_pred ccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEEC-CHHHHHHHHHHhCCCcc--
Q ss_pred CccccccccCCccccccceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcch
Q 009590 75 GAQKANNNQNNLPNQFKNMQLDNGKGGNNNNNNNKGQKGGNNNNNNNNPPKGGGGGGGQQPNA 137 (531)
Q Consensus 75 ~~~~~~~~~~~~~~q~~~l~I~~g~gg~~~~~~~~~~~~~~~~~~~~~~~gggg~~~~~~~~~ 137 (531)
....+..++.+-...+......-......+..+..+.+..+++++++.+.+.+
T Consensus 261 ----------~g~~~~l~V~~a~~~~~~~~~~~~~~~G~g~~gg~g~Gg~g~ggggg~~~~~~ 313 (346)
T TIGR01659 261 ----------EGGSQPLTVRLAEEHGKAKAHHYMSQMGHGNMGNMGHGNMGMAGGSGMNPPNP 313 (346)
T ss_pred ----------CCCceeEEEEECCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 108
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=28.09 E-value=2.4e+02 Score=24.69 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=29.8
Q ss_pred EEEEEE-ccccHHHHHHHHHH---HhCC--CCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcCCce
Q 009590 11 TYVLKV-NIHCDGCKHKVKKI---LQKI--DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHA 71 (531)
Q Consensus 11 kv~LkV-gM~C~~Ca~KVEKa---L~ki--~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaGy~A 71 (531)
.++|.+ ..+|..|...+... .++. .+|.-+.|+... ...+.+++++.+.+++.++..
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~----~~~~~~~~~~~~~~~~~~~~~ 87 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPE----FAFERDLANVKSAVLRYGITY 87 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCc----cccccCHHHHHHHHHHcCCCC
Confidence 344444 77999998665332 2222 233333332211 001235777888888777653
No 109
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=28.08 E-value=32 Score=37.43 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=4.5
Q ss_pred CCHHHHHHHH
Q 009590 55 VDPSVLIKKL 64 (531)
Q Consensus 55 v~pd~Ii~aI 64 (531)
+.+++|+++.
T Consensus 144 ~pl~ElL~rY 153 (542)
T KOG0699|consen 144 VPLAELLKRY 153 (542)
T ss_pred CcHHHHHHHh
Confidence 4444444433
No 110
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.91 E-value=2.9e+02 Score=21.44 Aligned_cols=53 Identities=11% Similarity=0.252 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHhCCC-CeeEEEeecC--CCe--EEEEec-CCHHHHHHHHHHcCCceE
Q 009590 20 CDGCKHKVKKILQKID-GVFTTSIDSE--QGK--VTVSGN-VDPSVLIKKLAKSGKHAE 72 (531)
Q Consensus 20 C~~Ca~KVEKaL~ki~-GV~svsVdl~--~gk--VtV~g~-v~pd~Ii~aI~kaGy~A~ 72 (531)
.+....+|..+|.+.. -|.++.+... ... ++|+.+ .+.++++++|++.||++.
T Consensus 11 ~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 11 RPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHCCCeee
Confidence 4456666777766542 3444443332 222 334432 466799999999999763
No 111
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=26.97 E-value=3.6e+02 Score=22.92 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=38.8
Q ss_pred cccceEEEEEE--ccccHHHHHHHHHHHhCCC-CeeEEEe-ecCCCeEEEEecCCHHHHHHHHHHcCCc
Q 009590 6 FMKIQTYVLKV--NIHCDGCKHKVKKILQKID-GVFTTSI-DSEQGKVTVSGNVDPSVLIKKLAKSGKH 70 (531)
Q Consensus 6 ~~~~~kv~LkV--gM~C~~Ca~KVEKaL~ki~-GV~svsV-dl~~gkVtV~g~v~pd~Ii~aI~kaGy~ 70 (531)
.....+++|+| .+....-..+|.+.|.-.+ ....++. |.+...|+|+.+.++++-++..+.++.+
T Consensus 6 ~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~ 74 (82)
T cd06407 6 TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSH 74 (82)
T ss_pred EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCC
Confidence 33445566777 3566666667777766433 3344443 4556667777776776666655555544
No 112
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=26.82 E-value=78 Score=35.18 Aligned_cols=16 Identities=19% Similarity=0.731 Sum_probs=10.9
Q ss_pred EEEEE--ccccHHHHHHH
Q 009590 12 YVLKV--NIHCDGCKHKV 27 (531)
Q Consensus 12 v~LkV--gM~C~~Ca~KV 27 (531)
+.|+| ..+|+.|...|
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v 135 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVV 135 (517)
T ss_pred eEEEEEEcCCCCCcHHHH
Confidence 34444 68999997544
No 113
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=26.71 E-value=65 Score=31.38 Aligned_cols=34 Identities=12% Similarity=0.294 Sum_probs=22.0
Q ss_pred EEEEEEccccHHH------HHHHHHHHhCCCCeeEEEeec
Q 009590 11 TYVLKVNIHCDGC------KHKVKKILQKIDGVFTTSIDS 44 (531)
Q Consensus 11 kv~LkVgM~C~~C------a~KVEKaL~ki~GV~svsVdl 44 (531)
++.|.+.++++.| +..|+.+|..+++|.+|+|++
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 3445554444444 345888898899998777754
No 114
>PHA02854 putative host range protein; Provisional
Probab=26.22 E-value=44 Score=32.72 Aligned_cols=7 Identities=0% Similarity=0.401 Sum_probs=2.9
Q ss_pred cccceee
Q 009590 89 QFKNMQL 95 (531)
Q Consensus 89 q~~~l~I 95 (531)
.|-++.|
T Consensus 110 ~YPtI~I 116 (178)
T PHA02854 110 MYPTVTI 116 (178)
T ss_pred eCCEEEE
Confidence 3344444
No 115
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.14 E-value=46 Score=38.60 Aligned_cols=6 Identities=33% Similarity=0.086 Sum_probs=2.3
Q ss_pred CCcchH
Q 009590 133 QQPNAQ 138 (531)
Q Consensus 133 ~~~~~~ 138 (531)
+|+.+|
T Consensus 60 ~~~~~~ 65 (1179)
T KOG3648|consen 60 GQQLPQ 65 (1179)
T ss_pred hhhhHH
Confidence 343333
No 116
>PRK11670 antiporter inner membrane protein; Provisional
Probab=26.04 E-value=1.4e+02 Score=32.22 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCCeeEEEeecCC------------------CeEEEE------ec-CCHHHHHHHHHHcCCceEEcCccc
Q 009590 24 KHKVKKILQKIDGVFTTSIDSEQ------------------GKVTVS------GN-VDPSVLIKKLAKSGKHAELWGAQK 78 (531)
Q Consensus 24 a~KVEKaL~ki~GV~svsVdl~~------------------gkVtV~------g~-v~pd~Ii~aI~kaGy~A~l~~~~~ 78 (531)
...++.+|+.+++|.+++|.+.. ..+.|. ++ +....|..+|.+.|+++.++..+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~ 146 (369)
T PRK11670 67 KEQCSAELLRITGAKAIDWKLSHNIATLKRVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADI 146 (369)
T ss_pred HHHHHHHHHhcCCCceEEEEEeeehhhhccccccccCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 45688889999998766654332 122233 11 344567778889999988776554
No 117
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.86 E-value=1.6e+02 Score=28.85 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCCeeEEEeecCCCe
Q 009590 21 DGCKHKVKKILQKIDGVFTTSIDSEQGK 48 (531)
Q Consensus 21 ~~Ca~KVEKaL~ki~GV~svsVdl~~gk 48 (531)
..|-+=||+.+.+++||.++++-.+.+.
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~ 40 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGH 40 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCC
Confidence 5677778999999999999998877664
No 118
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.86 E-value=34 Score=39.58 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=3.0
Q ss_pred cccceee
Q 009590 89 QFKNMQL 95 (531)
Q Consensus 89 q~~~l~I 95 (531)
+|...+|
T Consensus 285 DFqi~~I 291 (754)
T KOG1980|consen 285 DFQINKI 291 (754)
T ss_pred ceeEEEe
Confidence 3344444
No 119
>KOG3411 consensus 40S ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
Probab=25.68 E-value=49 Score=31.10 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHHhCCCCeeEEEeecCCCeE-EEEecCCHHHHHHHHHH
Q 009590 19 HCDGCKHKVKKILQKIDGVFTTSIDSEQGKV-TVSGNVDPSVLIKKLAK 66 (531)
Q Consensus 19 ~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkV-tV~g~v~pd~Ii~aI~k 66 (531)
+|.+.-...+++|+.|+.+..|+.+...++. +-.+..++++|+..|..
T Consensus 92 ~~~as~~i~rkvlQ~Le~~~~ve~hp~gGR~lt~~GqrdldrIa~~i~~ 140 (143)
T KOG3411|consen 92 FCDASGGIARKVLQALEKMGIVEKHPKGGRRLTEQGQRDLDRIAGQIRE 140 (143)
T ss_pred hhccccHHHHHHHHHHHhCCceeeCCCCcceeCcccchhHHHHHHHHHh
Confidence 4554444445555555555556665555433 33466788888877764
No 120
>PRK14449 acylphosphatase; Provisional
Probab=25.23 E-value=3.7e+02 Score=23.03 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=33.4
Q ss_pred EEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHH
Q 009590 11 TYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 11 kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~k 66 (531)
+++|.| + ...-.....|.+...++ ++.-+--|+.+++|+|... ...+++++.|++
T Consensus 4 ~~~i~v~G~VQGVGFR~fv~~~A~~l-gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14449 4 TVHLRITGHVQGVGLRYSVYQKAVSL-GITGYAENLYDGSVEVVAEGDEENIKELINFIKT 63 (90)
T ss_pred EEEEEEEEeecCcChHHHHHHHHHHc-CCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 344555 3 45555666666655543 5666667888888887643 345556666664
No 121
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=25.10 E-value=1.5e+02 Score=28.23 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCCeeEEEeecCCC
Q 009590 21 DGCKHKVKKILQKIDGVFTTSIDSEQG 47 (531)
Q Consensus 21 ~~Ca~KVEKaL~ki~GV~svsVdl~~g 47 (531)
..|-+-+|..+.+++||.++++-+..+
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG 33 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGG 33 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCC
Confidence 578888899999999999999876655
No 122
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=25.04 E-value=73 Score=31.26 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=38.2
Q ss_pred ceEEEEEEccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEE---------ecCCHHHHHHHHHHcCCce
Q 009590 9 IQTYVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS---------GNVDPSVLIKKLAKSGKHA 71 (531)
Q Consensus 9 ~~kv~LkVgM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~---------g~v~pd~Ii~aI~kaGy~A 71 (531)
+.-|+|-|++++..|-..||+.|..+ ++++--+||.+. ..++.++|++.....-...
T Consensus 65 IDlIVFvinl~sk~SL~~ve~SL~~v------d~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~pl 130 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSVEASLSHV------DPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPL 130 (176)
T ss_pred eEEEEEEEecCCcccHHHHHHHHhhC------ChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCE
Confidence 34466777999999999999999854 445555666532 1256677766665655554
No 123
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=24.90 E-value=2.5e+02 Score=22.86 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=34.7
Q ss_pred EEEEEE-ccccHHHHHHHHHHHhCCCC-eeEEEeecCCCeEEEE--ec---CCHHHHHHHHHH
Q 009590 11 TYVLKV-NIHCDGCKHKVKKILQKIDG-VFTTSIDSEQGKVTVS--GN---VDPSVLIKKLAK 66 (531)
Q Consensus 11 kv~LkV-gM~C~~Ca~KVEKaL~ki~G-V~svsVdl~~gkVtV~--g~---v~pd~Ii~aI~k 66 (531)
.+++.| +.+++.....|.++|....+ |..++........+.. .+ .+.++|.++|++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~ 64 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEE 64 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHH
Confidence 456777 78999999999999998865 5566665555555533 22 244455555554
No 124
>PRK12596 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=24.30 E-value=4.9e+02 Score=25.04 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=40.4
Q ss_pred EEEEEccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEe--cCCHHHHHHHHH
Q 009590 12 YVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSG--NVDPSVLIKKLA 65 (531)
Q Consensus 12 v~LkVgM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g--~v~pd~Ii~aI~ 65 (531)
+++++.++-+.....+-..+.-.+|...++++.+.+++.|.. ..+++++++.|+
T Consensus 93 V~vpl~l~sd~~~t~lAn~ITLTPGTltvdv~~d~~~L~VH~Ld~~~~e~~~~~i~ 148 (171)
T PRK12596 93 VVIPLELQNRTALAVLACMITASPGTAWVDYNAARGILTIHVLDLEDAETWRHLIK 148 (171)
T ss_pred EEEeccCCCHHHHHHHHHHHccCCCEEEEEEECCCCEEEEEEeeCCCHHHHHHHHH
Confidence 455556778888888888888899999999999988888863 245555555543
No 125
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.07 E-value=48 Score=37.76 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=4.9
Q ss_pred HHHHHHHcCCc
Q 009590 60 LIKKLAKSGKH 70 (531)
Q Consensus 60 Ii~aI~kaGy~ 70 (531)
+|..|+.+|..
T Consensus 295 aI~flkecGak 305 (739)
T KOG2140|consen 295 AIAFLKECGAK 305 (739)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 126
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.97 E-value=3.3e+02 Score=21.11 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHhCCC-CeeEEEeecC----CCeEEEEec--CCHHHHHHHHHHcCCce
Q 009590 20 CDGCKHKVKKILQKID-GVFTTSIDSE----QGKVTVSGN--VDPSVLIKKLAKSGKHA 71 (531)
Q Consensus 20 C~~Ca~KVEKaL~ki~-GV~svsVdl~----~gkVtV~g~--v~pd~Ii~aI~kaGy~A 71 (531)
-+....+|.+.|.+.. -|..+.+... ...++|+.. .+.+++++.|++.||++
T Consensus 11 ~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 11 EPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred CCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 3446667777776543 2333333221 233333332 35688999999999963
No 127
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=23.77 E-value=40 Score=32.95 Aligned_cols=14 Identities=21% Similarity=0.142 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHcC
Q 009590 55 VDPSVLIKKLAKSG 68 (531)
Q Consensus 55 v~pd~Ii~aI~kaG 68 (531)
++...|++.|++..
T Consensus 31 ~~F~dii~EI~~~~ 44 (175)
T COG3343 31 FNFSDIINEIQKLL 44 (175)
T ss_pred ccHHHHHHHHHHHh
Confidence 56777777776543
No 128
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=23.73 E-value=1.6e+02 Score=24.87 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=37.9
Q ss_pred EEEEEE-c-c---ccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEE-ecCCHHHHHHHHHHcCCceEEcCccc
Q 009590 11 TYVLKV-N-I---HCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVS-GNVDPSVLIKKLAKSGKHAELWGAQK 78 (531)
Q Consensus 11 kv~LkV-g-M---~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~-g~v~pd~Ii~aI~kaGy~A~l~~~~~ 78 (531)
.++|++ + + ++..+...+..++.. +.+..+.+|++.-...=. +-..+.++++.+++.+.++.++...+
T Consensus 13 ~~vi~~~G~l~~~~~~~~~~~l~~~~~~-~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~~~ 85 (108)
T TIGR00377 13 VVIVRLSGELDAHTAPLLREKVTPAAER-TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVSP 85 (108)
T ss_pred EEEEEEecccccccHHHHHHHHHHHHHh-cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 355666 3 3 456666666665553 466778888764322211 22344555666677777777666543
No 129
>PRK14422 acylphosphatase; Provisional
Probab=23.58 E-value=4e+02 Score=23.08 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=34.4
Q ss_pred ceEEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHH
Q 009590 9 IQTYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 9 ~~kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~k 66 (531)
+.++.+.| + ...-.....|.+...++ ++.-+.-|+.+++|+|... ...+++++.|++
T Consensus 5 ~~~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 5 DVRLTAWVHGHVQGVGFRWWTRSRALEL-GLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred cEEEEEEEEEeeCCcCcHHHHHHHHHHc-CCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 34455666 3 45555565665555443 6666667888888877643 345666677765
No 130
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=23.44 E-value=72 Score=25.97 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=7.6
Q ss_pred EccccHHHHH
Q 009590 16 VNIHCDGCKH 25 (531)
Q Consensus 16 VgM~C~~Ca~ 25 (531)
+...|+.|..
T Consensus 6 ~~~~C~~C~~ 15 (76)
T PF13192_consen 6 FSPGCPYCPE 15 (76)
T ss_dssp ECSSCTTHHH
T ss_pred eCCCCCCcHH
Confidence 4667999973
No 131
>PRK14441 acylphosphatase; Provisional
Probab=23.35 E-value=4.5e+02 Score=22.71 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=31.9
Q ss_pred ceEEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHH
Q 009590 9 IQTYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 9 ~~kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~k 66 (531)
|.++.|.| + ..--..+..+.+...+ -++.-+.-|..+++|+|... ...+.+++.|++
T Consensus 4 ~~~~~i~v~G~VQGVGFR~~v~~~A~~-lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 65 (93)
T PRK14441 4 RVRARIVVSGRVQGVAFRQSAADEARR-LGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCHA 65 (93)
T ss_pred cEEEEEEEEEecCCccchHHHHHHHhh-cCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 45555666 3 2333334444444333 36666667888898877632 345666777764
No 132
>PRK14424 acylphosphatase; Provisional
Probab=22.87 E-value=4.2e+02 Score=23.16 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=32.9
Q ss_pred ceEEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHH
Q 009590 9 IQTYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 9 ~~kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~k 66 (531)
|.+++|.| + ..+-.-...|.+...++ ++.-+.-|+.+++|+|... ...+++++.|+.
T Consensus 6 m~~~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~ 67 (94)
T PRK14424 6 IETYYVRVRGVVQGVGFRHATVREAHAL-GLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLRH 67 (94)
T ss_pred cEEEEEEEEEeecCCchHHHHHHHHHHc-CCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 34566666 3 45544455555444433 4555555888887777633 345666777764
No 133
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.86 E-value=2e+02 Score=22.55 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEEccccHH-HHHHHHHHHhCCCCeeEEEe
Q 009590 12 YVLKVNIHCDG-CKHKVKKILQKIDGVFTTSI 42 (531)
Q Consensus 12 v~LkVgM~C~~-Ca~KVEKaL~ki~GV~svsV 42 (531)
+.|.|..+-.. ....|-+.|+++++|.+|.+
T Consensus 43 i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 43 VTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 33444333333 66778888888888888765
No 134
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.56 E-value=44 Score=30.58 Aligned_cols=9 Identities=11% Similarity=0.471 Sum_probs=4.3
Q ss_pred HHHHHHHHh
Q 009590 24 KHKVKKILQ 32 (531)
Q Consensus 24 a~KVEKaL~ 32 (531)
+..|+..|.
T Consensus 12 R~IIe~LL~ 20 (135)
T COG3076 12 RLIIEELLE 20 (135)
T ss_pred HHHHHHHHh
Confidence 344555554
No 135
>PRK14447 acylphosphatase; Provisional
Probab=22.18 E-value=4.2e+02 Score=23.00 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=21.2
Q ss_pred CCeeEEEeecCCC-eEEEEec---CCHHHHHHHHHH
Q 009590 35 DGVFTTSIDSEQG-KVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 35 ~GV~svsVdl~~g-kVtV~g~---v~pd~Ii~aI~k 66 (531)
-+|.-+.-|+.++ +|+|... ...+++++.|++
T Consensus 30 ~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~~ 65 (95)
T PRK14447 30 NGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWARV 65 (95)
T ss_pred cCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 3677777888888 6887533 345566666664
No 136
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=22.15 E-value=5.2e+02 Score=22.34 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=26.0
Q ss_pred EEEEE-ccccHHHHHHHHHHHhCC---CCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcCCc
Q 009590 12 YVLKV-NIHCDGCKHKVKKILQKI---DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKH 70 (531)
Q Consensus 12 v~LkV-gM~C~~Ca~KVEKaL~ki---~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaGy~ 70 (531)
++|.+ .-+|..|...+. .|.++ .+|.-+ .|..+.+.+.+.+.+++..+.
T Consensus 28 vvv~F~a~~C~~C~~~~~-~l~~l~~~~~~~vv---------~v~~~~~~~~~~~~~~~~~~~ 80 (127)
T cd03010 28 YLLNVWASWCAPCREEHP-VLMALARQGRVPIY---------GINYKDNPENALAWLARHGNP 80 (127)
T ss_pred EEEEEEcCcCHHHHHHHH-HHHHHHHhcCcEEE---------EEECCCCHHHHHHHHHhcCCC
Confidence 44555 678999987553 34332 112212 222233556666667666554
No 137
>PRK07334 threonine dehydratase; Provisional
Probab=22.11 E-value=2.9e+02 Score=29.90 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=37.4
Q ss_pred EEEEEc-cccHHHHHHHHHHHhCCC-CeeEEEeecC-----CCeEEEE--ec----CCHHHHHHHHHHcCCceEEc
Q 009590 12 YVLKVN-IHCDGCKHKVKKILQKID-GVFTTSIDSE-----QGKVTVS--GN----VDPSVLIKKLAKSGKHAELW 74 (531)
Q Consensus 12 v~LkVg-M~C~~Ca~KVEKaL~ki~-GV~svsVdl~-----~gkVtV~--g~----v~pd~Ii~aI~kaGy~A~l~ 74 (531)
++|+|. ..-..-..+|.++|+... .|.++++... ...++|. .. ..++.|++.|++.||.++++
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~g~~~~~~ 402 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAAGFEARLV 402 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHcCCeeEeC
Confidence 455552 444555677777776542 2555555422 3444333 22 24467899999999998775
No 138
>PRK14429 acylphosphatase; Provisional
Probab=22.03 E-value=4e+02 Score=22.85 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=30.9
Q ss_pred EEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHH
Q 009590 12 YVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 12 v~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~k 66 (531)
+.|.| + ..+-..+..+.+...++ ++.-+--|+.+++|+|... ...+++++.|++
T Consensus 4 ~~~~v~G~VQGVGFR~~v~~~A~~~-gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 4 VLIKLTGKVQGVGCRRATLTKARAL-GVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred EEEEEEEeecCeeeHHHHHHHHHHh-CCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 34455 3 34444444444443333 5666667889898887643 345666777764
No 139
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=21.92 E-value=1.9e+02 Score=24.88 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCeeEEEeecCCCeEEEE--ecCCHHHHHHHHHH
Q 009590 26 KVKKILQKIDGVFTTSIDSEQGKVTVS--GNVDPSVLIKKLAK 66 (531)
Q Consensus 26 KVEKaL~ki~GV~svsVdl~~gkVtV~--g~v~pd~Ii~aI~k 66 (531)
-+-+.|-.++||.+|-+.. .-|+|+ ..++++.|...|..
T Consensus 38 pLA~~Lf~i~gV~~Vf~~~--dfItVtK~~~~~W~~l~~~I~~ 78 (87)
T PF08712_consen 38 PLAQALFAIPGVKSVFIGD--DFITVTKNPDADWEDLKPEIRE 78 (87)
T ss_dssp HHHHHHHTSTTEEEEEEET--TEEEEEE-TTS-HHHHHHHHHH
T ss_pred HHHHHhcCCCCEeEEEEEC--CEEEEeeCCCCCHHHHHHHHHH
Confidence 3444555899999888755 456776 45899999888865
No 140
>PRK14444 acylphosphatase; Provisional
Probab=21.62 E-value=4.5e+02 Score=22.66 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=30.5
Q ss_pred eEEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHH
Q 009590 10 QTYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAK 66 (531)
Q Consensus 10 ~kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~k 66 (531)
.++.+.| + ...-..+..+.+...++ ++.-.--|+.+++|+|... ...+++++.|++
T Consensus 4 ~~~~i~v~G~VQGVGFR~~v~~~A~~l-gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14444 4 VRAHVFISGRVQGVNFRAYTRDRAREA-GVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCYS 64 (92)
T ss_pred EEEEEEEEEeeCCcCcHHHHHHHHHHh-CCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 3444555 3 33444444444443333 5555667788887777643 345566666664
No 141
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=21.58 E-value=2.9e+02 Score=24.56 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=27.8
Q ss_pred eEEEEEE-cc-ccHHHHHHHHHHHhCC------CCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcCCceE
Q 009590 10 QTYVLKV-NI-HCDGCKHKVKKILQKI------DGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKHAE 72 (531)
Q Consensus 10 ~kv~LkV-gM-~C~~Ca~KVEKaL~ki------~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaGy~A~ 72 (531)
+.++|.+ .- +|+.|...+. .|.++ .+|.-+. |....+.. +.+.+++.++...
T Consensus 29 k~~vv~f~~~~~Cp~C~~~~p-~l~~l~~~~~~~~v~~v~---------v~~~~~~~-~~~~~~~~~~~~~ 88 (146)
T PF08534_consen 29 KPVVVNFWASAWCPPCRKELP-YLNELQEKYKDKGVDVVG---------VSSDDDPP-VREFLKKYGINFP 88 (146)
T ss_dssp SEEEEEEESTTTSHHHHHHHH-HHHHHHHHHHTTTCEEEE---------EEESSSHH-HHHHHHHTTTTSE
T ss_pred CeEEEEEEccCCCCcchhhhh-hHHhhhhhhccCceEEEE---------ecccCCHH-HHHHHHhhCCCce
Confidence 3344555 54 9999998775 33332 3333222 22332333 7777777665543
No 142
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.57 E-value=1.5e+02 Score=28.36 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=44.1
Q ss_pred EEEEEEc---c-ccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec-------CCHHHHHHHHHHcCCceEEcCccc
Q 009590 11 TYVLKVN---I-HCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN-------VDPSVLIKKLAKSGKHAELWGAQK 78 (531)
Q Consensus 11 kv~LkVg---M-~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~-------v~pd~Ii~aI~kaGy~A~l~~~~~ 78 (531)
+++++.+ + .-......|++++-.-.+|..+.++...+.|+|+.. ..-..|.+.+.++||..+++...+
T Consensus 38 RIvvR~dps~l~~~e~A~~~I~~ivP~ea~i~di~Fd~~tGEV~IeaeKPG~ViGk~g~~~reI~~~tgW~p~vvRtpP 116 (145)
T cd02410 38 RIVIRPDPSVLKPPEEAIKIILEIVPEEAGITDIYFDDDTGEVIIEAEKPGLVIGKGGSTLREITRETGWAPKVVRTPP 116 (145)
T ss_pred eEEEcCChhhcCCHHHHHHHHHHhCCCccCceeeEecCCCcEEEEEEcCCeEEEecCchhHHHHHHHhCCeeEEEecCC
Confidence 3555552 2 234445566666666678999999999999998743 122334555568999988765443
No 143
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=21.53 E-value=4e+02 Score=20.77 Aligned_cols=54 Identities=19% Similarity=0.111 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHhCCCC-eeEEEeecCCCeEEEEe-cCCHHHHHHHHHHcCCceE
Q 009590 19 HCDGCKHKVKKILQKIDG-VFTTSIDSEQGKVTVSG-NVDPSVLIKKLAKSGKHAE 72 (531)
Q Consensus 19 ~C~~Ca~KVEKaL~ki~G-V~svsVdl~~gkVtV~g-~v~pd~Ii~aI~kaGy~A~ 72 (531)
+.+.-..+|.++|.+..- |.++.+.....++++.- ..+++.+++.|++.||++.
T Consensus 10 d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 10 NKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHCCCEEE
Confidence 455566677777765432 34444433322344432 2467799999999999865
No 144
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=21.26 E-value=1.9e+02 Score=23.70 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=16.5
Q ss_pred ccccHHHHHHHHHHHhCC----CCeeEEEeec
Q 009590 17 NIHCDGCKHKVKKILQKI----DGVFTTSIDS 44 (531)
Q Consensus 17 gM~C~~Ca~KVEKaL~ki----~GV~svsVdl 44 (531)
--+|+.|. ++++.|..+ .+|....+|.
T Consensus 8 ~~~C~~C~-~a~~~L~~l~~~~~~i~~~~idi 38 (85)
T PRK11200 8 RPGCPYCV-RAKELAEKLSEERDDFDYRYVDI 38 (85)
T ss_pred CCCChhHH-HHHHHHHhhcccccCCcEEEEEC
Confidence 35899998 566666664 3554444443
No 145
>PRK10026 arsenate reductase; Provisional
Probab=21.04 E-value=2.8e+02 Score=26.10 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=28.7
Q ss_pred EEEEEccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcCCc
Q 009590 12 YVLKVNIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGKH 70 (531)
Q Consensus 12 v~LkVgM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaGy~ 70 (531)
++|-..-+|..|+..++ .|.. .+|.-..+++.. ...+.++|...|++++..
T Consensus 4 i~iY~~p~Cst~RKA~~-wL~~-~gi~~~~~d~~~------~ppt~~eL~~~l~~~g~~ 54 (141)
T PRK10026 4 ITIYHNPACGTSRNTLE-MIRN-SGTEPTIIHYLE------TPPTRDELVKLIADMGIS 54 (141)
T ss_pred EEEEeCCCCHHHHHHHH-HHHH-CCCCcEEEeeeC------CCcCHHHHHHHHHhCCCC
Confidence 33434568999985544 4432 244333333222 335777888888877753
No 146
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=20.44 E-value=4.7e+02 Score=22.03 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=34.3
Q ss_pred eEEEEEE-c-cccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEec---CCHHHHHHHHHHcCCceEEc
Q 009590 10 QTYVLKV-N-IHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGN---VDPSVLIKKLAKSGKHAELW 74 (531)
Q Consensus 10 ~kv~LkV-g-M~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~---v~pd~Ii~aI~kaGy~A~l~ 74 (531)
.+++|.| + ..--.-...|.+...++ +|.-+--++.+++|.|... ...+++++.|++--..+.+.
T Consensus 4 ~~~~i~v~G~VQGVgFR~~v~~~A~~~-gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~g~p~a~V~ 72 (91)
T PF00708_consen 4 KRYRIIVSGRVQGVGFRPFVKRIARKL-GLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKKGPPPARVD 72 (91)
T ss_dssp EEEEEEEEEETSSSSHHHHHHHHHHHT-T-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHHSSTTSEEE
T ss_pred EEEEEEEEEEECcCChhHHHHHHHHHh-CCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHhCCCCcEEE
Confidence 3445555 3 33333444444444433 4666777888888887632 45567777777643334443
No 147
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=20.19 E-value=3.5e+02 Score=23.54 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=11.2
Q ss_pred EEEEEE-ccccHHHHHHH
Q 009590 11 TYVLKV-NIHCDGCKHKV 27 (531)
Q Consensus 11 kv~LkV-gM~C~~Ca~KV 27 (531)
.+.+.+ .-+|..|....
T Consensus 16 ~vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLK 33 (125)
T ss_pred cEEEEEeCCCCHHHHHHH
Confidence 344555 56899998643
No 148
>PHA03075 glutaredoxin-like protein; Provisional
Probab=20.10 E-value=3.7e+02 Score=24.95 Aligned_cols=59 Identities=20% Similarity=0.389 Sum_probs=30.9
Q ss_pred EEEEc-cccHHHHHHHHHHHhCCCC---eeEE---EeecCCCeEEEEecCCHHHHHHHH-HHcCCceE
Q 009590 13 VLKVN-IHCDGCKHKVKKILQKIDG---VFTT---SIDSEQGKVTVSGNVDPSVLIKKL-AKSGKHAE 72 (531)
Q Consensus 13 ~LkVg-M~C~~Ca~KVEKaL~ki~G---V~sv---sVdl~~gkVtV~g~v~pd~Ii~aI-~kaGy~A~ 72 (531)
.+-++ -.|.-|+ .+..+|.+++. |.+| ++-..++.|.|.+....-.++..| +..+-++.
T Consensus 5 LILfGKP~C~vCe-~~s~~l~~ledeY~ilrVNIlSfFsK~g~v~~lg~d~~y~lInn~~~~lgne~v 71 (123)
T PHA03075 5 LILFGKPLCSVCE-SISEALKELEDEYDILRVNILSFFSKDGQVKVLGMDKGYTLINNFFKHLGNEYV 71 (123)
T ss_pred EEEeCCcccHHHH-HHHHHHHHhhccccEEEEEeeeeeccCCceEEEecccceehHHHHHHhhcccEE
Confidence 34455 5799997 55666666654 3333 333445556665432333344444 34554433
No 149
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=20.09 E-value=2.4e+02 Score=27.10 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCeeEEEeecCCCeEEEE
Q 009590 22 GCKHKVKKILQKIDGVFTTSIDSEQGKVTVS 52 (531)
Q Consensus 22 ~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~ 52 (531)
.-+.+|.+.+.++++|..+.+-.....+.|-
T Consensus 54 ~~A~~Ia~~v~~v~~V~dA~vvVtg~~A~Vg 84 (158)
T TIGR02898 54 DVADEIASEAAKVKGVKDATVVITGNYAYVG 84 (158)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECCEEEEE
Confidence 6788999999999999999998888777765
No 150
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=20.02 E-value=1.7e+02 Score=25.81 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=26.7
Q ss_pred ccccHHHHHHHHHHHhCCCCeeEEEeecCCCeEEEEecCCHHHHHHHHHHcCC
Q 009590 17 NIHCDGCKHKVKKILQKIDGVFTTSIDSEQGKVTVSGNVDPSVLIKKLAKSGK 69 (531)
Q Consensus 17 gM~C~~Ca~KVEKaL~ki~GV~svsVdl~~gkVtV~g~v~pd~Ii~aI~kaGy 69 (531)
.-+|+.|+. +++.|.. .+|.-..+++.. ...+.++|.+.++.++.
T Consensus 6 ~~~C~~c~k-a~~~L~~-~~i~~~~idi~~------~~~~~~el~~l~~~~~~ 50 (117)
T TIGR01617 6 SPNCTTCKK-ARRWLEA-NGIEYQFIDIGE------DGPTREELLDILSLLED 50 (117)
T ss_pred CCCCHHHHH-HHHHHHH-cCCceEEEecCC------ChhhHHHHHHHHHHcCC
Confidence 358999984 4566654 355434444332 22456677777777774
Done!