BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009592
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 263 bits (673), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/421 (37%), Positives = 237/421 (56%), Gaps = 43/421 (10%)
Query: 109 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGP 168
TTRSW+F+G + +++ +++VG++D G+WPES SF DEG P
Sbjct: 1 TTRSWDFLGFPLTVPR-------------RSQVESNIVVGVLDTGIWPESPSFDDEGFSP 47
Query: 169 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 228
P WKG C+T N+ CN+KIIGAR Y G G +N PRD +GHGTHT
Sbjct: 48 PPPKWKGTCETS---NNFRCNRKIIGARSYHIGRPISPGDVNG------PRDTNGHGTHT 98
Query: 229 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288
AST AG V A+ +G GTA GG PLAR+A YK CW + C + D+LAA
Sbjct: 99 ASTAAGGLVSQANLYG-LGLGTARGGVPLARIAAYKVCW---------NDGCSDTDILAA 148
Query: 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 348
DDAI DGV ++S+S+G P + D IAIG+ +AV+ IL + SAGN GP + ++L
Sbjct: 149 YDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208
Query: 349 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNET 408
+PWL++V A ++DR FV V +G G G ++ ++ + +PLV D+ G ++ +
Sbjct: 209 SPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFDKSTS 267
Query: 409 NQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAH 467
C S+ P +KGKIV+C G + K ++ G G+++ +N +Y+ D++
Sbjct: 268 RFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLD----GAAGVLM---TSNTRDYA-DSY 319
Query: 468 YLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYIL 527
LP++ + +D + YI S +P A I ++ T+L+ AP + +F+SRGPN ++
Sbjct: 320 PLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVI 378
Query: 528 K 528
K
Sbjct: 379 K 379
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 205/393 (52%), Gaps = 25/393 (6%)
Query: 129 FNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLC 188
N L + GQDVIV ++D+G+WPES SF D+GM +PK WKGIC+ G FN+S+C
Sbjct: 10 LNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMC 69
Query: 189 NKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAE 248
N+K+IGA Y+ KG +N T + S RD DGHGTH AS AG S F G+A
Sbjct: 70 NRKLIGANYFNKGILANDPTVNITMN--SARDTDGHGTHCASITAGNFAKGVSHF-GYAP 126
Query: 249 GTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQ 308
GTA G AP ARLA+YK + F +D++AA+D A+ DGV ++SIS G +
Sbjct: 127 GTARGVAPRARLAVYKFSF---------NEGTFTSDLIAAMDQAVADGVDMISISYGY-R 176
Query: 309 PFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPV 368
D I+I + A+ +LV+ SAGN GP SL+N +PW++ V +G DR F G +
Sbjct: 177 FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTL 236
Query: 369 VLGTGMEIIGKTVTPYN-LKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVL 427
LG G++I G ++ P + P++Y + + + L PE IV+
Sbjct: 237 TLGNGLKIRGWSLFPARAFVRDSPVIYNKT-----LSDCSSEELLSQVENPENT---IVI 288
Query: 428 CMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIK 487
C F + + + + P ++ P V + ++ Y+K
Sbjct: 289 CDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPN---PGVVVNKKEGKQVINYVK 345
Query: 488 STNNPTAIIKQARTVLHTQPAPFMANFTSRGPN 520
++ PTA I T L T+PAP +A ++RGP+
Sbjct: 346 NSVTPTATITFQETYLDTKPAPVVAASSARGPS 378
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 23/147 (15%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
+P D +GHGTH AS AG G + G G AP A+L K + +
Sbjct: 173 TPYDDNGHGTHVASIAAGT--------GAASNGKYKGMAPGAKLVGIKVL-----NGQGS 219
Query: 277 GNTCFEADMLAAIDDAIRD----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 332
G+ +D++ +D A+++ G+ V+++S+G++Q + D ++ NA ++V
Sbjct: 220 GSI---SDIINGVDWAVQNKDKYGIKVINLSLGSSQS-SDGTDSLSQAVNNAWDAGLVVV 275
Query: 333 CSAGNSGPAPSSLSN--LAPWLITVGA 357
+AGNSGP ++ + A +ITVGA
Sbjct: 276 VAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A + + ++
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPSAELYAVKVLGADGRGAISS 104
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 105 --------IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG + S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGASSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A + N+ G AP A L K A+ + ++
Sbjct: 55 STQDGNGHGTHVAGTIA--ALDNSIGVLGV--------APSAELYAVKVLGASGSGAISS 104
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 105 --------IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 41/215 (19%)
Query: 175 GICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAG 234
GI TG+A SS + K++G ++ G + D +GHGTH A TVA
Sbjct: 29 GIIDTGIA--SSHTDLKVVGGASFVSG-------------ESYNTDGNGHGTHVAGTVA- 72
Query: 235 RRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294
+ N + G A +++Y K ++G+ + A +++ I+ A +
Sbjct: 73 -ALDNTTGVLGVAP----------NVSLYAI-----KVLNSSGSGSYSA-IVSGIEWATQ 115
Query: 295 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPW--- 351
+G+ V+++S+G + + A I+V +AGNSG + S + P
Sbjct: 116 NGLDVINMSLGGPSGSTALKQAVD----KAYASGIVVVAAAGNSGNSGSQNTIGYPAKYD 171
Query: 352 -LITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYN 385
+I VGA +++ +G+ +E++ V+ Y+
Sbjct: 172 SVIAVGAVDSNKNRASFSSVGSELEVMAPGVSVYS 206
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA 275
RS M HGTH AS + G+ E + G AP R I P S
Sbjct: 53 RSDGFMSAHGTHVASIIFGQ-----------PETSVPGIAPQCRGLI------VPIFSDD 95
Query: 276 AGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACS 334
+ D+ I+ A+ G H+++IS G F DG A++ + N+L+ +
Sbjct: 96 R-RRITQLDLARGIERAVNAGAHIINISGGELTDFG-EADGWLENAVSLCRQNNVLLVAA 153
Query: 335 AGNSGPAPSSLSNLAPWLITVGA 357
AGN+G + P ++ VGA
Sbjct: 154 AGNNGCDCLHVPAALPAVLAVGA 176
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA 275
RS M HGTH AS + G+ E + G AP R I P S
Sbjct: 62 RSDGFMSAHGTHVASIIFGQ-----------PETSVPGIAPQCRGLI------VPIFSDD 104
Query: 276 AGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACS 334
+ D+ I+ A+ G H+++IS G F DG A++ + N+L+ +
Sbjct: 105 R-RRITQLDLARGIERAVNAGAHIINISGGELTDFG-EADGWLENAVSLCRQNNVLLVAA 162
Query: 335 AGNSGPAPSSLSNLAPWLITVGA 357
AGN+G + P ++ VGA
Sbjct: 163 AGNNGCDCLHVPAALPAVLAVGA 185
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 39/175 (22%)
Query: 203 EQLYGPLNATED----DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 258
E++ G +N T D + + D +GHGTH A TVA + G AP A
Sbjct: 61 ERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSG----------VVGVAPKA 110
Query: 259 RLAIYKACWATPKASKAAGNTCFEADMLA-AIDDAIR------DGVHVLSISIGTNQPFA 311
L I KA +G+ E +A AI A+ + + ++++S+G
Sbjct: 111 DLFIIKAL---------SGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSE 161
Query: 312 FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA-----PWLITVGAGSLD 361
D + AV +N+ V C+AGN G + A +I VGA D
Sbjct: 162 ELHDAVKY----AVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD 212
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 30/145 (20%)
Query: 200 KGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR 259
K F P+N + DR +GHGTH A T A A GG + G AP A
Sbjct: 52 KDFTGATTPINNSCTDR-----NGHGTHVAGT--------ALADGGSDQAGIYGVAPDAD 98
Query: 260 LAIYKACWATPKASKAAGNTCFEADMLAAI----DDAIRDGVH-VLSISIGTNQPFAFNR 314
L YK + + + D+ AAI D A G ++S+S+G++ N
Sbjct: 99 LWAYKVLLDS--------GSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA----NN 146
Query: 315 DGIAIGALNAVKHNILVACSAGNSG 339
I+ A +L+ +AGNSG
Sbjct: 147 SLISSAVNYAYSKGVLIVAAAGNSG 171
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA 275
RS M HGTH AS + G+ E + G AP R I P S
Sbjct: 43 RSDGFMSAHGTHVASIIFGQ-----------PETSVPGIAPQCRGLI------VPIFSDD 85
Query: 276 AGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACS 334
+ D+ I+ A+ G H+++IS G F DG A++ + N+L+ +
Sbjct: 86 R-RRITQLDLARGIERAVNAGAHIINISGGELTDFG-EADGWLENAVSLCRQNNVLLVAA 143
Query: 335 AGNSGPAPSSLSNLAPWLITVGA 357
AGN+G + P ++ VGA
Sbjct: 144 AGNNGCDCLHVPAALPAVLAVGA 166
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 30/145 (20%)
Query: 200 KGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR 259
K F P+N + DR +GHGTH A T A A GG + G AP A
Sbjct: 52 KDFTGATTPINNSCTDR-----NGHGTHVAGT--------ALADGGSDQAGIYGVAPDAD 98
Query: 260 LAIYKACWATPKASKAAGNTCFEADMLAAI----DDAIRDGVH-VLSISIGTNQPFAFNR 314
L YK + + + D+ AAI D A G ++S+S+G++ N
Sbjct: 99 LWAYKVLLDS--------GSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA----NN 146
Query: 315 DGIAIGALNAVKHNILVACSAGNSG 339
I+ A +L+ +AGNSG
Sbjct: 147 SLISSAVNYAYSKGVLIVAAAGNSG 171
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 37/176 (21%)
Query: 203 EQLYGPLNATED----DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 258
E++ G +N T D + + D +GHGTH A TVA + G AP A
Sbjct: 43 ERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSG----------VVGVAPKA 92
Query: 259 RLAIYKACWATPKASKAAGNTCFEADMLA-AIDDAIR------DGVHVLSISIGTNQPFA 311
L I KA +G+ E +A AI A+ + + ++++S+G
Sbjct: 93 DLFIIKAL---------SGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSE 143
Query: 312 FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDF 364
D + AV +N+ V C+AGN G + A + + G++D D
Sbjct: 144 ELHDAVKY----AVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDL 195
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPSAELYAVKVL--------GA 96
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ + + ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 97 SGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 77/201 (38%), Gaps = 48/201 (23%)
Query: 176 ICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGR 235
+ TGV + + K+I KG++ + ++D P D++ HGTH A +A
Sbjct: 37 VIDTGVDYTHPDLDGKVI------KGYDFV-------DNDYDPMDLNNHGTHVAG-IAAA 82
Query: 236 RVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD 295
NA+ G AP R+ +A + T +D+ AI A
Sbjct: 83 ETNNATGIAGM--------APNTRILAVRAL------DRNGSGTL--SDIADAIIYAADS 126
Query: 296 GVHVLSISIGTN---------QPFAFNRDGIAIGA---------LNAVKHNILVACSAGN 337
G V+++S+G + +A+N+ + + A + ++A A +
Sbjct: 127 GAEVINLSLGCDCHTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD 186
Query: 338 SGPAPSSLSNLAPWLITVGAG 358
+S SN W+ V G
Sbjct: 187 QYDRLASFSNYGTWVDVVAPG 207
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 33/179 (18%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A + N+ G AP A L K A+ + ++
Sbjct: 55 STQDGNGHGTHVAGTIA--ALDNSIGVLGV--------APSAELYAVKVLGASGSGAISS 104
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 105 --------IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPA----PSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
N G P+ +N + VGA + + G G++I+ V N++ +P
Sbjct: 153 NEGAGSIDYPARYAN----AMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPSAELYAVKVL--------GA 96
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ + + ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 97 SGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPNAELYAVKVL--------GA 96
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ + + ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 97 SGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPNAELYAVKVL--------GA 96
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ + ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 97 SGGGSNSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
S +D +GHGTH A T+A ++ G G AP A L K A
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGVL------GVAPNAELYAVKVL--------GA 96
Query: 277 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG 336
+ + + ++ A +G+HV ++S+G+ P A + +A +LV ++G
Sbjct: 97 SGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 337 NSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHP 391
NSG S + VGA + + G G++I+ V N++ +P
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGV---NVQSTYP 204
>pdb|3VOT|A Chain A, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
pdb|3VOT|B Chain B, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
Length = 425
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 25/160 (15%)
Query: 292 AIRDGVHVLSISIGTNQPFAFNRDGIAIGALN-------AVKHNILVACSAG--NSGPAP 342
+I+ VHVLSI N F +G+ I A+ + A SA + GPA
Sbjct: 212 SIQGNVHVLSIGYKGNSKGPFFEEGVYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAH 271
Query: 343 SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPG 402
+ L LD+D P V+ G I G V+ Y +K+ + + V+
Sbjct: 272 TEL-------------RLDKDGT-PYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNA 317
Query: 403 VHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGME 441
+ E+++ G + P + G ++ ++GSG F+ G+E
Sbjct: 318 LKPLESSE-FEGEIRPVRTAGNYIIPVQGSGTFEKIDGLE 356
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 27/105 (25%)
Query: 156 PESKSFSDEGMGP----VPKSWK---------GICQTGVAFNSSLCNKKIIGARYYLKGF 202
P FS GP P++W I TGV N K++G ++
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFV--- 59
Query: 203 EQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFA 247
++D +P++ +GHGTH A +A N++ G A
Sbjct: 60 ----------DNDSTPQNGNGHGTHCAG-IAAAVTNNSTGIAGTA 93
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 27/105 (25%)
Query: 156 PESKSFSDEGMGP----VPKSWK---------GICQTGVAFNSSLCNKKIIGARYYLKGF 202
P FS GP P++W I TGV N K++G ++
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFV--- 59
Query: 203 EQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFA 247
++D +P++ +GHGTH A +A N++ G A
Sbjct: 60 ----------DNDSTPQNGNGHGTHCAG-IAAAVTNNSTGIAGTA 93
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
D S D GHGTH VAG + N GG G G AP A L YK
Sbjct: 62 DNSCTDRQGHGTH----VAGSALAN----GGTGSGV-YGVAPEADLWAYKVL-------- 104
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH----NIL 330
+ + D+ AI A D L+ + N + + I NAV + +L
Sbjct: 105 GDDGSGYADDIAEAIRHA-GDQATALNTKVVINMSLGSSGESSLI--TNAVDYAYDKGVL 161
Query: 331 VACSAGNSGPAPSSL 345
+ +AGNSGP P S+
Sbjct: 162 IIAAAGNSGPKPGSI 176
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 142 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 199
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I I A NA
Sbjct: 200 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI-IQAYNA 251
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 252 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 281
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 57/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D A D V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDPDA-------DAAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 363 DFVGP---VVLGTGMEIIGKTVTPYNLKKM-------HPLVYAADVVVPGVHQNETNQCL 412
DF P V ++I K +T K++ HP + V +H+ ET CL
Sbjct: 224 DFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCL 283
Query: 413 PGSLTPEKVKGKIVLCMRGS-GFKLSKGMEVKRAGGV 448
K+KG I+ M + F +K + +K+ GV
Sbjct: 284 KKFNARRKLKGAILTTMLATRNFSAAKSL-LKKPDGV 319
>pdb|3TKL|B Chain B, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 267
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 68 SYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYS 106
+Y+ ++ GF +LT E LSE+ E + + EK +
Sbjct: 60 TYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDSEKLT 98
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 65 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 123 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 65 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 123 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DDA V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DDA---AAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|3TNF|B Chain B, Lida From Legionella In Complex With Active Rab8a
Length = 384
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 68 SYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYS 106
+Y+ ++ GF +LT E LSE+ E + + EK +
Sbjct: 43 TYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLT 81
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 65 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 123 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|3FEC|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Iii
(GcpiiiNAALADASE II), PSEUDO-Unliganded
pdb|3FED|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH A TRANSITION STATE ANALOG OF Glu-Glu
pdb|3FEE|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH QUISQUALIC ACID
pdb|3FF3|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH L-Glutamate
Length = 707
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 423 GKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 458
GKIV+ G F+ +K AG +G+IL + PA+
Sbjct: 155 GKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPAD 190
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 67 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 124
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 125 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 173
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 174 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
>pdb|3SFV|B Chain B, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 344
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 68 SYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYS 106
+Y+ ++ GF +LT E LSE+ E + + EK +
Sbjct: 19 TYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDSEKLT 57
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 76 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 133
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 134 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 182
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 183 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|2AIF|A Chain A, Crystal Structure Of High Mobility Like Protein, Nhp2,
Putative From Cryptosporidium Parvum
Length = 135
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 271 KASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNIL 330
+A+KA E +LAA + + +H+ + N P+ F R +A+G V ++
Sbjct: 48 EATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVI 107
Query: 331 VACSAGNSGPAPSS 344
A G + SS
Sbjct: 108 AAAITSKDGSSLSS 121
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 76 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQ 133
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 134 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 182
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 183 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,773,769
Number of Sequences: 62578
Number of extensions: 737124
Number of successful extensions: 1806
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 1706
Number of HSP's gapped (non-prelim): 96
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)