BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009593
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 116/279 (41%), Gaps = 56/279 (20%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I +G+ N V +D GS LW+P V C + + Y PS SS S+ L+
Sbjct: 18 ITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLN 77
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASV- 225
++ Y + +SS G L +D + G ++KN V A V
Sbjct: 78 TPFKIG-------------------YGDGSSSQGTLYKDTVGF---GGVSIKNQVLADVD 115
Query: 226 -------IIGCGMK--QSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLI-RNSFSMCFD 275
I+G G K ++GG D +VP L K G+I +N++S+ +
Sbjct: 116 STSIDQGILGVGYKTNEAGGSYD---------------NVPVTLKKQGVIAKNAYSLYLN 160
Query: 276 KDDS--GRIFFGDQGPATQQSTSFLA---SNGKYITYIIGVETCCIGSSCLKQTSFKAIV 330
D+ G+I FG A + S S +A ++ + + +G + + + + ++
Sbjct: 161 SPDAATGQIIFGGVDNA-KYSGSLIALPVTSDRELRISLG--SVEVSGKTINTDNVDVLL 217
Query: 331 DSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKC 369
DSG++ T+L +++ + I F+ ++ Y C
Sbjct: 218 DSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDC 256
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 56/265 (21%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I +G+ N V +D GS LW+P + C + + Y PS SS S+ L+
Sbjct: 18 ITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSASQDLN 77
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASV- 225
P+++ Y + +SS G L +D + G ++KN V A V
Sbjct: 78 ------------------TPFSIG-YGDGSSSQGTLYKDTVGF---GGVSIKNQVLADVD 115
Query: 226 -------IIGCGMK--QSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLI-RNSFSMCFD 275
I+G G K ++GG D +VP L K G+I +N++S+ +
Sbjct: 116 STSIDQGILGVGYKTNEAGGSYD---------------NVPVTLKKQGVIAKNAYSLYLN 160
Query: 276 KDDS--GRIFFGDQGPATQQSTSFLA---SNGKYITYIIGVETCCIGSSCLKQTSFKAIV 330
DS G+I FG A + S S +A ++ + + +G + + + + ++
Sbjct: 161 SPDSATGQIIFGGVDNA-KYSGSLIALPVTSDRELRISLG--SVEVSGKTINTDNVDVLL 217
Query: 331 DSGSSFTFLPKEVYETIAAEFDRQV 355
DSG++ T+L +++ + I F+ ++
Sbjct: 218 DSGTTITYLQQDLADQIIKAFNGKL 242
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 131/333 (39%), Gaps = 58/333 (17%)
Query: 98 DFGWLHY-TWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSP 156
D L Y T I+ TP VS + +D G LW+ CD +Y +S R +
Sbjct: 16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD--------QNYVSSTYRPV-RCRT 66
Query: 157 SASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLIS-GGDN 215
S S S ++C C N C + NT++ G + ED++ + S G +
Sbjct: 67 SQCSLSGSIACGDCFNGPRPGCNN--NTCGVFPENPVINTATGGEVAEDVVSVESTDGSS 124
Query: 216 ALKNSVQASVIIGCGMKQSGGYLDGVAPD--GLIGLGLGEISVPSLLAKAGLIRNSFSMC 273
+ + I C L +A G+ GLG I++PS A A + F+MC
Sbjct: 125 SGRVVTVPRFIFSCAPTS---LLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMC 181
Query: 274 FDKDDSGR--IFFGDQGPAT--------------------QQSTSFLASNGK-YITYIIG 310
S I FG+ P T STS ++ G+ + Y IG
Sbjct: 182 LSGSTSSNSVIIFGND-PYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 311 VETCCIGSSCLK-QTSFKAIVDSG---------SSFTFLPKEVYETIAAEFDRQ-VNDTI 359
V++ I S + TS +I +G + +T L +Y+ + F ++ I
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNI 300
Query: 360 TSFEGY-PWKCCYKSS---SQRL-PKLPSVKLM 387
T P+ C+ + S RL P +PS+ L+
Sbjct: 301 TRVASVAPFGACFSTDNILSTRLGPSVPSIDLV 333
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 131/333 (39%), Gaps = 58/333 (17%)
Query: 98 DFGWLHY-TWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSP 156
D L Y T I+ TP VS + +D G LW+ CD +Y +S R +
Sbjct: 16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD--------QNYVSSTYRPV-RCRT 66
Query: 157 SASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLIS-GGDN 215
S S S ++C C N C + NT++ G + ED++ + S G +
Sbjct: 67 SQCSLSGSIACGDCFNGPRPGCNN--NTCGVFPENPVINTATGGEVAEDVVSVESTDGSS 124
Query: 216 ALKNSVQASVIIGCGMKQSGGYLDGVAPD--GLIGLGLGEISVPSLLAKAGLIRNSFSMC 273
+ + I C L +A G+ GLG I++PS A A + F+MC
Sbjct: 125 SGRVVTVPRFIFSCAPTS---LLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMC 181
Query: 274 FDKDDSGR--IFFGDQGPAT--------------------QQSTSFLASNGK-YITYIIG 310
S I FG+ P T STS ++ G+ + Y IG
Sbjct: 182 LSGSTSSNSVIIFGND-PYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 311 VETCCIGSSCLK-QTSFKAIVDSG---------SSFTFLPKEVYETIAAEFDRQ-VNDTI 359
V++ I S + TS +I +G + +T L +Y+ + F ++ I
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNI 300
Query: 360 TSFEGY-PWKCCYKSS---SQRL-PKLPSVKLM 387
T P+ C+ + S RL P +PS+ L+
Sbjct: 301 TRVASVAPFGACFSTDNILSTRLGPSVPSIDLV 333
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 125/325 (38%), Gaps = 53/325 (16%)
Query: 192 YTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGL 251
YT+ S +G + ED++ + G + + V I + +L G+ +G++GL
Sbjct: 72 YTQG-SWTGFVGEDLVTIPKGFNTSFL------VNIATIFESENFFLPGIKWNGILGLAY 124
Query: 252 GEISVPS---------LLAKAGLIRNSFSMCF---------DKDDSGRIFFGDQGPATQQ 293
++ PS L+ +A I N FSM + G + G P+ +
Sbjct: 125 ATLAKPSSSLETFFDSLVTQAN-IPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYK 183
Query: 294 STSFLASNGKYITYIIGVETCCIGSS-----CLKQTSFKAIVDSGSSFTFLPKEVYETIA 348
+ + Y I + IG C + + KAIVDSG++ LP++V++ +
Sbjct: 184 GDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVV 243
Query: 349 AEFDRQVNDTITSFEGYPWK----CCYKSSSQRLPKLP--SVKLMXXXXXXXXXXXXXXX 402
R I F W C+ +S P S+ L
Sbjct: 244 EAVARA--SLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQ 301
Query: 403 IYGTQVVTG-------FCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNCQDL 455
+Y Q + G + I P + IG M G+ V+FDR ++G++ S C ++
Sbjct: 302 LY-IQPMMGAGLNYECYRFGISPSTNAL-VIGATVMEGFYVIFDRAQKRVGFAASPCAEI 359
Query: 456 NDGTKSPLTPGP----GTPSNPLPA 476
S ++ GP SN +PA
Sbjct: 360 AGAAVSEIS-GPFSTEDVASNCVPA 383
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 137/364 (37%), Gaps = 66/364 (18%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
+Y I IGTP +F V D GS LW+P +C+ L
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPS--TKCSRL----------------------- 51
Query: 163 KHLSCS-HRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKN-- 219
+L+C H L + S + +T+ Y + G L +D + GG +
Sbjct: 52 -YLACGIHSLYESSDSSSYMENGDDFTIHYGSGRVK--GFLSQD--SVTVGGITVTQTFG 106
Query: 220 SVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKD 277
V +I + Q DGV G +G ++ +L++ L FS+ +++
Sbjct: 107 EVTQLPLIPFMLAQ----FDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRG 162
Query: 278 DS---GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDSG 333
G + G P Q S K ++ I ++ +GSS L + + +VD+G
Sbjct: 163 PHLLGGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTG 222
Query: 334 SSFTFLP----KEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMXX 389
SSF P K + + + A+ ++++++ Y S ++P LP +
Sbjct: 223 SSFISAPTSSLKLIMQALGAK-EKRLHE-------------YVVSCSQVPTLPDISFNLG 268
Query: 390 XXXXXXXXXXXXXIYGTQ-----VVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLK 444
Y + V + I P G + +G F+ + FDR N +
Sbjct: 269 GRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNR 328
Query: 445 LGWS 448
+G++
Sbjct: 329 IGFA 332
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/382 (21%), Positives = 133/382 (34%), Gaps = 74/382 (19%)
Query: 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLD 148
G + L N +YT I +GTP +F V LD GS LW+P + C L+ ++ D
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYD 58
Query: 149 RDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILH 208
+ +S+S + + GT S G + +D L
Sbjct: 59 HE--------ASSSYKANGTEFAIQYGTG-------------------SLEGYISQDTLS 91
Query: 209 LISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL-------LA 261
+ GD + A G+ + G DG+ +GLG ISV + +
Sbjct: 92 I---GDLTIPKQDFAEATSEPGLTFAFGKFDGI-----LGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 KAGLIRNSFSMCF-----DKDDSGRIFFG--DQGPATQQSTSFLASNGKYITYIIGVETC 314
+ L F+ D ++ G FG D+ T Y + + E
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAY--WEVKFEGI 201
Query: 315 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSS 374
+G + S A +D+G+S LP + E I AE + W Y
Sbjct: 202 GLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKG----------WTGQYTLD 251
Query: 375 SQRLPKLPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGFCL-AIQPVD-----GDIGTIGQ 428
LP + T V+G C+ AI P+D G + +G
Sbjct: 252 CNTRDNLPDLIFNFNGYNFTIGPYDY-----TLEVSGSCISAITPMDFPEPVGPLAIVGD 306
Query: 429 NFMTGYRVVFDRENLKLGWSHS 450
F+ Y ++D N +G + +
Sbjct: 307 AFLRKYYSIYDLGNNAVGLAKA 328
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 157/401 (39%), Gaps = 80/401 (19%)
Query: 76 KTGPQFQMLFPSQGSKTMSLGNDFGWL---------HYTWIDIGTPNVSFLVALDAGSDL 126
+ GP++ SQ K ++LGN + +Y I IGTP +F V D GS
Sbjct: 32 RLGPEW-----SQPMKRLTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSN 86
Query: 127 LWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPC 185
+W+P +C+ L +A Y+ L + S SS+ KH
Sbjct: 87 VWVPSS--KCSRLYTACVYHKL------FDASDSSSYKH------------------NGT 120
Query: 186 PYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDG 245
T+ Y T SG L +DI+ + GG + + + + + DGV G
Sbjct: 121 ELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFGEVTEMPALPFMLAE--FDGVVGMG 174
Query: 246 LIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS------GRIFFGDQGPATQQSTSF 297
I +G ++ +++++ L + FS +++D G+I G P +
Sbjct: 175 FIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFH 234
Query: 298 LASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDSGSSF----TFLPKEVYETIAAEFD 352
+ K + I ++ +GSS L + A+VD+G+S+ T +++ E + A+
Sbjct: 235 YINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK-- 292
Query: 353 RQVNDTITSFEGYPWKCCYKSSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQ--- 407
+++ D Y KC P LP S L Y ++
Sbjct: 293 KRLFD-------YVVKC------NEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLC 339
Query: 408 VVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWS 448
+ + I P G +G F+ + FDR N ++G++
Sbjct: 340 TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFA 380
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 145/362 (40%), Gaps = 65/362 (17%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 71
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 72 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 109
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDD- 278
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 110 EVTEMPALPFMLAE--FDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSL 167
Query: 279 SGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDSGSSF- 336
G+I G P + + K + I ++ +GSS L + A+VD+G+S+
Sbjct: 168 GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYI 227
Query: 337 ---TFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLP--SVKLMXXXX 391
T +++ E + A+ +++ D Y KC P LP S L
Sbjct: 228 SGSTSSIEKLMEALGAK--KRLFD-------YVVKC------NEGPTLPDISFHLGGKEY 272
Query: 392 XXXXXXXXXXXIYGTQVVTGFCLAIQPVD-----GDIGTIGQNFMTGYRVVFDRENLKLG 446
Y ++ + LAI +D G +G F+ + FDR N ++G
Sbjct: 273 TLTSADYVFQESYSSKKLC--TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIG 330
Query: 447 WS 448
++
Sbjct: 331 FA 332
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/382 (21%), Positives = 133/382 (34%), Gaps = 74/382 (19%)
Query: 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLD 148
G + L N +YT I +GTP +F V LD GS LW+P + C L+ ++ D
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYD 58
Query: 149 RDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILH 208
+ +S+S + + GT S G + +D L
Sbjct: 59 HE--------ASSSYKANGTEFAIQYGTG-------------------SLEGYISQDTLS 91
Query: 209 LISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL-------LA 261
+ GD + A G+ + G DG+ +GLG ISV + +
Sbjct: 92 I---GDLTIPKQDFAEATSEPGLTFAFGKFDGI-----LGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 KAGLIRNSFSMCF-----DKDDSGRIFFG--DQGPATQQSTSFLASNGKYITYIIGVETC 314
+ L F+ D ++ G FG D+ T Y + + E
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAY--WEVKFEGI 201
Query: 315 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSS 374
+G + S A +D+G+S LP + E I AE + W Y
Sbjct: 202 GLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKG----------WTGQYTLD 251
Query: 375 SQRLPKLPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGFCL-AIQPVD-----GDIGTIGQ 428
LP + T V+G C+ AI P+D G + +G
Sbjct: 252 CNTRDNLPDLIFNFNGYNFTIGPYDY-----TLEVSGSCISAITPMDFPEPVGPLAIVGD 306
Query: 429 NFMTGYRVVFDRENLKLGWSHS 450
F+ Y ++D N +G + +
Sbjct: 307 AFLRKYYSIYDIGNNAVGLAKA 328
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 143/365 (39%), Gaps = 66/365 (18%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 71
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 72 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 109
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS 279
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 110 EVTEMPALPFMLAE--FDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSE 167
Query: 280 ------GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDS 332
G+I G P + + K + I ++ +GSS L + A+VD+
Sbjct: 168 NSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT 227
Query: 333 GSSF----TFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLP--SVKL 386
G+S+ T +++ E + A+ +++ D Y KC P LP S L
Sbjct: 228 GASYISGSTSSIEKLMEALGAK--KRLFD-------YVVKC------NEGPTLPDISFHL 272
Query: 387 MXXXXXXXXXXXXXXXIYGTQ---VVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENL 443
Y ++ + + I P G +G F+ + FDR N
Sbjct: 273 GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNN 332
Query: 444 KLGWS 448
++G++
Sbjct: 333 RIGFA 337
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 143/365 (39%), Gaps = 66/365 (18%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 67
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 68 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 105
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS 279
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 106 EVTEMPALPFMLAE--FDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSE 163
Query: 280 ------GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDS 332
G+I G P + + K + I ++ +GSS L + A+VD+
Sbjct: 164 NSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT 223
Query: 333 GSSF----TFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLP--SVKL 386
G+S+ T +++ E + A+ +++ D Y KC P LP S L
Sbjct: 224 GASYISGSTSSIEKLMEALGAK--KRLFD-------YVVKC------NEGPTLPDISFHL 268
Query: 387 MXXXXXXXXXXXXXXXIYGTQ---VVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENL 443
Y ++ + + I P G +G F+ + FDR N
Sbjct: 269 GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNN 328
Query: 444 KLGWS 448
++G++
Sbjct: 329 RIGFA 333
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 143/365 (39%), Gaps = 66/365 (18%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 64
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 65 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 102
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS 279
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 103 EVTEMPALPFMLAE--FDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSE 160
Query: 280 ------GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDS 332
G+I G P + + K + I ++ +GSS L + A+VD+
Sbjct: 161 NSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT 220
Query: 333 GSSF----TFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLP--SVKL 386
G+S+ T +++ E + A+ +++ D Y KC P LP S L
Sbjct: 221 GASYISGSTSSIEKLMEALGAK--KRLFD-------YVVKC------NEGPTLPDISFHL 265
Query: 387 MXXXXXXXXXXXXXXXIYGTQ---VVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENL 443
Y ++ + + I P G +G F+ + FDR N
Sbjct: 266 GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNN 325
Query: 444 KLGWS 448
++G++
Sbjct: 326 RIGFA 330
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 145/367 (39%), Gaps = 70/367 (19%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 68
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 69 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 106
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS 279
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 107 EVTEMPALPFMLAE--FDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSE 164
Query: 280 ------GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDS 332
G+I G P + + K + I ++ +GSS L + A+VD+
Sbjct: 165 NSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT 224
Query: 333 GSSF----TFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLP--SVKL 386
G+S+ T +++ E + A+ +++ D Y KC P LP S L
Sbjct: 225 GASYISGSTSSIEKLMEALGAK--KRLFD-------YVVKC------NEGPTLPDISFHL 269
Query: 387 MXXXXXXXXXXXXXXXIYGTQVVTGFCLAIQPVD-----GDIGTIGQNFMTGYRVVFDRE 441
Y ++ + LAI +D G +G F+ + FDR
Sbjct: 270 GGKEYTLTSADYVFQESYSSKKLC--TLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRR 327
Query: 442 NLKLGWS 448
N ++G++
Sbjct: 328 NNRIGFA 334
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 143/365 (39%), Gaps = 66/365 (18%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 71
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 72 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 109
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS 279
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 110 EVTEMPALPFMLAE--FDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSE 167
Query: 280 ------GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDS 332
G+I G P + + K + I ++ +GSS L + A+VD+
Sbjct: 168 NSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT 227
Query: 333 GSSF----TFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLP--SVKL 386
G+S+ T +++ E + A+ +++ D Y KC P LP S L
Sbjct: 228 GASYISGSTSSIEKLMEALGAK--KRLFD-------YVVKC------NEGPTLPDISFHL 272
Query: 387 MXXXXXXXXXXXXXXXIYGTQ---VVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENL 443
Y ++ + + I P G +G F+ + FDR N
Sbjct: 273 GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNN 332
Query: 444 KLGWS 448
++G++
Sbjct: 333 RIGFA 337
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 136/382 (35%), Gaps = 74/382 (19%)
Query: 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLD 148
G + L N +YT I +GTP +F V LD GS LW+P + C L+ ++ D
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYD 58
Query: 149 RDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILH 208
+ +S+S + + GT S G + +D L
Sbjct: 59 HE--------ASSSYKANGTEFAIQYGTG-------------------SLEGYISQDTLS 91
Query: 209 LISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL-------LA 261
+ GD + A G+ + G DG+ +GLG ISV + +
Sbjct: 92 I---GDLTIPKQDFAEATSEPGLTFAFGKFDGI-----LGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 KAGLIRNSFSMCF-----DKDDSGRIFFG--DQGPATQQSTSFLASNGKYITYIIGVETC 314
+ L F+ D ++ G FG D+ T Y + + E
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAY--WEVKFEGI 201
Query: 315 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSS 374
+G + S A +D+G+S LP + E I AE + T Y C ++
Sbjct: 202 GLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGSTGQ----YTLDC---NT 254
Query: 375 SQRLPKLPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGFCL-AIQPVD-----GDIGTIGQ 428
LP L T V+G C+ AI P+D G + +G
Sbjct: 255 RDNLPDL--------IFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGD 306
Query: 429 NFMTGYRVVFDRENLKLGWSHS 450
F+ Y ++D N +G + +
Sbjct: 307 AFLRKYYSIYDLGNNAVGLAKA 328
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 140/376 (37%), Gaps = 97/376 (25%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P + C +++ ++ + + P SST
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVP--SIYCK-------SNVCKNHHRFDPRKSSTF 63
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
++L P ++ Y T S G L D + + N V
Sbjct: 64 RNLG------------------KPLSIHYGT--GSMEGFLGYDTV--------TVSNIVD 95
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGL----GEISVP---SLLAKAGLIRNSFSMCFD 275
+ +G +Q G DG++GL E SVP +++ + + R+ FS+ D
Sbjct: 96 PNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMD 155
Query: 276 KDDSGRIF-FGDQGPA------------TQQSTSFLASNGKYITYIIGVETCCIGSSCLK 322
++ G + G P+ QQ F + I GV C+G
Sbjct: 156 RNGQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDS----VTINGVAVACVGGC--- 208
Query: 323 QTSFKAIVDSGSSFTFLPK----EVYETIAAEFDR--QVNDTITSFEGYPWKCCYKSSSQ 376
+AI+D+G+S F P ++ I A +R + + + P ++ + +
Sbjct: 209 ----QAILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVNCGNLRSMP-TVVFEINGR 263
Query: 377 RLPKLPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGFCLAIQPVDG--DIGTIGQNFMTGY 434
P PS T GFC + D ++ +G F+ Y
Sbjct: 264 DYPLSPSAY--------------------TSKDQGFCTSGFQGDNNSELWILGDVFIREY 303
Query: 435 RVVFDRENLKLGWSHS 450
VFDR N ++G + +
Sbjct: 304 YSVFDRANNRVGLAKA 319
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 101/274 (36%), Gaps = 57/274 (20%)
Query: 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLD 148
GS ++L ND ++ I IGTP F V D GS +LW+P +C A +S+
Sbjct: 1 GSAVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSS--KCINSKACRAHSM- 57
Query: 149 RDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLV---ED 205
Y S SST K + GT ++++++ + G LV +D
Sbjct: 58 -----YESSDSSTYKENGTFGAII-YGTGS---------ITGFFSQDSVTIGDLVVKEQD 102
Query: 206 ILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVP---SLLAK 262
+ DN + + DG++GL ISVP ++L +
Sbjct: 103 FIEATDEADNVFLHRLF---------------------DGILGLSFQTISVPVWYNMLNQ 141
Query: 263 AGLIRNSFSMCF----DKDDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGS 318
+ FS D+++ G + FG P + + G+ IG
Sbjct: 142 GLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGD 201
Query: 319 SCLKQTSF-----KAIVDSGSSFTFLPKEVYETI 347
K T F +A DSG+S P + I
Sbjct: 202 ---KSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 67/270 (24%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I IG+ F V +D GS LW+P V C + Y+P +S+TS++L
Sbjct: 18 ITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTTSQNLG 77
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVI 226
P+ + Y + +SS G L +D + G ++ V A +
Sbjct: 78 ------------------TPFYIG-YGDGSSSQGTLYKDTVGF---GGASITKQVFADI- 114
Query: 227 IGCGMKQSGGYLDGVAPDGLIGLGL------GEI-SVPSLLAKAGLI-RNSFSMCFDKDD 278
K S P G++G+G G+ +VP L G+I +N++S+ + +
Sbjct: 115 ----TKTS-------IPQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPN 163
Query: 279 S--GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAI------- 329
+ G+I FG A KY +I V + S KA+
Sbjct: 164 AATGQIIFGGVDKA------------KYSGSLIAVPVTSDRELRITLNSLKAVGKNINGN 211
Query: 330 ----VDSGSSFTFLPKEVYETIAAEFDRQV 355
+DSG++ T+L ++V + I F ++
Sbjct: 212 IDVLLDSGTTITYLQQDVAQDIIDAFQAEL 241
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 143/367 (38%), Gaps = 82/367 (22%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +TS
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACSDHNQFNPD---DSSTFEATS 112
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
+ LS ++ GT S +G+L D + + GG + ++ Q
Sbjct: 113 QELSITY-----GTG-------------------SMTGILGYDTVQV--GG---ISDTNQ 143
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCF- 274
I G + G +L DG++GL IS V L GL+ ++ FS+
Sbjct: 144 ---IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 200
Query: 275 DKDDSGRIFFGDQGPATQQSTSF----LASNGKYITYIIGV----ETCCIGSSCLKQTSF 326
DDSG + ++ + S ++ G + + + ET C
Sbjct: 201 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC------ 254
Query: 327 KAIVDSGSSFTFLPKEVYETIAAEF------DRQVNDTITSFEGYPWKCCYKSSSQRLPK 380
+AIVD+G+S P I ++ D ++ + +S + P + + P
Sbjct: 255 QAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLP-DIVFTIDGVQYPL 313
Query: 381 LPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGF-CLAIQPVDGDIGTIGQNFMTGYRVVFD 439
PS ++ +GF + + G++ +G F+ Y VFD
Sbjct: 314 SPSAYILQDDD---------------SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 358
Query: 440 RENLKLG 446
R N K+G
Sbjct: 359 RANNKVG 365
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 141/367 (38%), Gaps = 82/367 (22%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +TS
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACSDHNQFNPD---DSSTFEATS 68
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
+ LS ++ GT S +G+L D + + + ++ Q
Sbjct: 69 QELSITY-----GTG-------------------SMTGILGYDTVQV-----GGISDTNQ 99
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL------LAKAGLI-RNSFSMCF- 274
I G + G +L DG++GL IS L GL+ ++ FS+
Sbjct: 100 ---IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 275 DKDDSGRIFFGDQGPATQQSTSF----LASNGKYITYIIGV----ETCCIGSSCLKQTSF 326
DDSG + ++ + S ++ G + + + ET C
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC------ 210
Query: 327 KAIVDSGSSFTFLPKEVYETIAAEF------DRQVNDTITSFEGYPWKCCYKSSSQRLPK 380
+AIVD+G+S P I ++ D ++ + +S + P + + + P
Sbjct: 211 QAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLP-DIVFTINGVQYPL 269
Query: 381 LPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGF-CLAIQPVDGDIGTIGQNFMTGYRVVFD 439
PS ++ +GF + + G++ +G F+ Y VFD
Sbjct: 270 SPSAYILQDDD---------------SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 440 RENLKLG 446
R N K+G
Sbjct: 315 RANNKVG 321
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 140/367 (38%), Gaps = 82/367 (22%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +TS
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACSDHNQFNPD---DSSTFEATS 68
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
+ LS ++ GT S +G+L D + + + ++ Q
Sbjct: 69 QELSITY-----GTG-------------------SMTGILGYDTVQV-----GGISDTNQ 99
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL------LAKAGLI-RNSFSMCF- 274
I G + G +L DG++GL IS L GL+ ++ FS+
Sbjct: 100 ---IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 275 DKDDSGRIFFGDQGPATQQSTSF----LASNGKYITYIIGV----ETCCIGSSCLKQTSF 326
DDSG + ++ + S ++ G + + + ET C
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC------ 210
Query: 327 KAIVDSGSSFTFLPKEVYETIAAEF------DRQVNDTITSFEGYPWKCCYKSSSQRLPK 380
+AIVD+G+S P I ++ D ++ + +S + P + + P
Sbjct: 211 QAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLP-DIVFTIDGVQYPL 269
Query: 381 LPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGF-CLAIQPVDGDIGTIGQNFMTGYRVVFD 439
PS ++ +GF + + G++ +G F+ Y VFD
Sbjct: 270 SPSAYILQDDD---------------SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 440 RENLKLG 446
R N K+G
Sbjct: 315 RANNKVG 321
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 107/271 (39%), Gaps = 59/271 (21%)
Query: 96 GNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEY 154
GND +Y + IGTP F + D GS LWI C C +Y
Sbjct: 12 GNDI--EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQT-----------KY 58
Query: 155 SPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGD 214
P+ SST + + + Y + +S+SG+L +D ++L G
Sbjct: 59 DPNQSSTYQADGRTWSIS-------------------YGDGSSASGILAKDNVNL---GG 96
Query: 215 NALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--------VPSLLAKAGLI 266
+K I +++ + G DGL+GLG I+ + +L+++ +
Sbjct: 97 LLIKGQT-----IELAKREAASFASG-PNDGLLGLGFDTITTVRGVKTPMDNLISQGLIS 150
Query: 267 RNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLAS------NGKYITYIIGVETCCIGSSC 320
R F + K + G+ ST F S + + I V+ +G+S
Sbjct: 151 RPIFGVYLGK--AKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTST 208
Query: 321 LKQTSFKAIVDSGSSFTFLPKEVYETIAAEF 351
+ +SF I+D+G++ LP + ++A +
Sbjct: 209 VA-SSFDGILDTGTTLLILPNNIAASVARAY 238
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 140/367 (38%), Gaps = 82/367 (22%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +TS
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACSDHNQFNPD---DSSTFEATS 68
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
+ LS ++ GT S +G+L D + + + ++ Q
Sbjct: 69 QELSITY-----GTG-------------------SMTGILGYDTVQV-----GGISDTNQ 99
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL------LAKAGLI-RNSFSMCF- 274
I G + G +L DG++GL IS L GL+ ++ FS+
Sbjct: 100 ---IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 275 DKDDSGRIFFGDQGPATQQSTSF----LASNGKYITYIIGV----ETCCIGSSCLKQTSF 326
DDSG + ++ + S ++ G + + + ET C
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC------ 210
Query: 327 KAIVDSGSSFTFLPKEVYETIAAEF------DRQVNDTITSFEGYPWKCCYKSSSQRLPK 380
+AIVD+G+S P I ++ D ++ + +S P + + + P
Sbjct: 211 QAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIASLP-DIVFTINGVQYPL 269
Query: 381 LPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGF-CLAIQPVDGDIGTIGQNFMTGYRVVFD 439
PS ++ +GF + + G++ +G F+ Y VFD
Sbjct: 270 SPSAYILQDDD---------------SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 440 RENLKLG 446
R N K+G
Sbjct: 315 RANNKVG 321
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 140/367 (38%), Gaps = 82/367 (22%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +T
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS--VYCSSLACSDHNQFNPD---DSSTFEATX 68
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
+ LS ++ GT S +G+L D + + + ++ Q
Sbjct: 69 QELSITY-----GTG-------------------SMTGILGYDTVQV-----GGISDTNQ 99
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL------LAKAGLI-RNSFSMCFD 275
I G + G +L DG++GL IS L GL+ ++ FS+
Sbjct: 100 ---IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 276 -KDDSGRIFFGDQGPATQQSTSF----LASNGKYITYIIGV----ETCCIGSSCLKQTSF 326
DDSG + ++ + S ++ G + + + ET C
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC------ 210
Query: 327 KAIVDSGSSFTFLPKEVYETIAAEF------DRQVNDTITSFEGYPWKCCYKSSSQRLPK 380
+AIVD+G+S P I ++ D ++ + +S + P + + + P
Sbjct: 211 QAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLP-DIVFTINGVQYPL 269
Query: 381 LPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGF-CLAIQPVDGDIGTIGQNFMTGYRVVFD 439
PS ++ +GF + + G++ +G F+ Y VFD
Sbjct: 270 SPSAYILQDDD---------------SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 440 RENLKLG 446
R N K+G
Sbjct: 315 RANNKVG 321
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 142/367 (38%), Gaps = 82/367 (22%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +T
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACSDHNQFNPD---DSSTFEATX 112
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
+ LS ++ GT S +G+L D + + GG + ++ Q
Sbjct: 113 QELSITY-----GTG-------------------SMTGILGYDTVQV--GG---ISDTNQ 143
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCF- 274
I G + G +L DG++GL IS V L GL+ ++ FS+
Sbjct: 144 ---IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 200
Query: 275 DKDDSGRIFFGDQGPATQQSTSF----LASNGKYITYIIGV----ETCCIGSSCLKQTSF 326
DDSG + ++ + S ++ G + + + ET C
Sbjct: 201 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC------ 254
Query: 327 KAIVDSGSSFTFLPKEVYETIAAEF------DRQVNDTITSFEGYPWKCCYKSSSQRLPK 380
+AIVD+G+S P I ++ D ++ + +S + P + + P
Sbjct: 255 QAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLP-DIVFTIDGVQYPL 313
Query: 381 LPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGF-CLAIQPVDGDIGTIGQNFMTGYRVVFD 439
PS ++ +GF + + G++ +G F+ Y VFD
Sbjct: 314 SPSAYILQDDD---------------SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 358
Query: 440 RENLKLG 446
R N K+G
Sbjct: 359 RANNKVG 365
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 108/276 (39%), Gaps = 59/276 (21%)
Query: 96 GNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEY 154
GND +Y + IGTP F + D GS LWI C C +Y
Sbjct: 12 GNDI--EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCG-----------SGQTKY 58
Query: 155 SPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGD 214
P+ SST + + + Y + +S+SG+L +D ++L G
Sbjct: 59 DPNQSSTYQADGRTWSIS-------------------YGDGSSASGILAKDNVNL---GG 96
Query: 215 NALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--------VPSLLAKAGLI 266
+K I +++ + G DGL+GLG I+ + +L+++ +
Sbjct: 97 LLIKGQT-----IELAKREAASFASG-PNDGLLGLGFDTITTVRGVKTPMDNLISQGLIS 150
Query: 267 RNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLAS------NGKYITYIIGVETCCIGSSC 320
R F + K + G+ ST F S + + I V+ +G+S
Sbjct: 151 RPIFGVYLGK--AKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTST 208
Query: 321 LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVN 356
+ +SF I+D+G++ LP + ++A + N
Sbjct: 209 VA-SSFDGILDTGTTLLILPNNIAASVARAYGASDN 243
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 139/367 (37%), Gaps = 82/367 (22%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +T
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACSDHNQFNPD---DSSTFEATX 68
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
+ LS ++ GT S +G+L D + + + ++ Q
Sbjct: 69 QELSITY-----GTG-------------------SMTGILGYDTVQV-----GGISDTNQ 99
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL------LAKAGLI-RNSFSMCF- 274
I G + G +L DG++GL IS L GL+ ++ FS+
Sbjct: 100 ---IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLS 156
Query: 275 DKDDSGRIFFGDQGPATQQSTSF----LASNGKYITYIIGV----ETCCIGSSCLKQTSF 326
DDSG + ++ + S ++ G + + + ET C
Sbjct: 157 SNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC------ 210
Query: 327 KAIVDSGSSFTFLPKEVYETIAAEF------DRQVNDTITSFEGYPWKCCYKSSSQRLPK 380
+AIVD+G+S P I ++ D ++ + +S + P + + P
Sbjct: 211 QAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLP-DIVFTIDGVQYPL 269
Query: 381 LPSVKLMXXXXXXXXXXXXXXXIYGTQVVTGF-CLAIQPVDGDIGTIGQNFMTGYRVVFD 439
PS ++ +GF + + G++ +G F+ Y VFD
Sbjct: 270 SPSAYILQDDD---------------SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 440 RENLKLG 446
R N K+G
Sbjct: 315 RANNKVG 321
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I +G+ N V +D GS LWIP V C P + YSP++S TS++L+
Sbjct: 18 ITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLN 77
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 138/361 (38%), Gaps = 70/361 (19%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ + +N + E S + STS
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVP--SVYCSSLACTNHNRFNP---EDSSTYQSTS 68
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
+ +S ++ GT S +G+L D + + GG + ++ Q
Sbjct: 69 ETVSITY-----GTG-------------------SMTGILGYDTVQV--GG---ISDTNQ 99
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCFD 275
I G + G +L DG++GL IS V + GL+ ++ FS+
Sbjct: 100 ---IFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLS 156
Query: 276 KDD---SGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDS 332
DD S IF G S +++ + I G + +AIVD+
Sbjct: 157 ADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGCQAIVDT 216
Query: 333 GSSFTFLPKEVYETIAAEFDRQVN---DTITS---FEGYPWKCCYKSSSQRLPKLPSVKL 386
G+S P I ++ N D + S P + + + P PS +
Sbjct: 217 GTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISSLP-DIVFTINGVQYPVPPSAYI 275
Query: 387 MXXXXXXXXXXXXXXXIYGTQVVTGFCLAIQPVD-GDIGTIGQNFMTGYRVVFDRENLKL 445
+ ++GF P + G++ +G F+ Y VFDR N ++
Sbjct: 276 LQSEG---------------SCISGFQGMNVPTESGELWILGDVFIRQYFTVFDRANNQV 320
Query: 446 G 446
G
Sbjct: 321 G 321
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 138/361 (38%), Gaps = 70/361 (19%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ + +N + E S + STS
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVP--SVYCSSLACTNHNRFNP---EDSSTYQSTS 68
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
+ +S ++ GT S +G+L D + + GG + ++ Q
Sbjct: 69 ETVSITY-----GTG-------------------SMTGILGYDTVQV--GG---ISDTNQ 99
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCFD 275
I G + G +L DG++GL IS V + GL+ ++ FS+
Sbjct: 100 ---IFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLS 156
Query: 276 KDD---SGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDS 332
DD S IF G S +++ + I G + +AIVD+
Sbjct: 157 ADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGCQAIVDT 216
Query: 333 GSSFTFLPKEVYETIAAEFDRQVN---DTITS---FEGYPWKCCYKSSSQRLPKLPSVKL 386
G+S P I ++ N D + S P + + + P PS +
Sbjct: 217 GTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISSLP-DIVFTINGVQYPVPPSAYI 275
Query: 387 MXXXXXXXXXXXXXXXIYGTQVVTGFCLAIQPVD-GDIGTIGQNFMTGYRVVFDRENLKL 445
+ ++GF P + G++ +G F+ Y VFDR N ++
Sbjct: 276 LQSEG---------------SCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQV 320
Query: 446 G 446
G
Sbjct: 321 G 321
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 40/166 (24%)
Query: 93 MSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLN 152
++L N ++ I +GTP F V D GS LW+P +C A Y +S
Sbjct: 44 VALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVP--SAKCYFSIACYLHS------ 95
Query: 153 EYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISG 212
Y ASST K K P + Y T S +G ED + +
Sbjct: 96 RYKAGASSTYK------------------KNGKPAAIQYGT--GSIAGYFSEDSVTV--- 132
Query: 213 GDNALKNS--VQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISV 256
GD +K+ ++A+ K+ G DG++GLG EISV
Sbjct: 133 GDLVVKDQEFIEAT-------KEPGITFLVAKFDGILGLGFKEISV 171
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 35/178 (19%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
+Y I IGTP +F V D GS +W+P +C+ L
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL----------------------- 54
Query: 163 KHLSCS-HRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
+ +C H+L D S T+ Y T SG L +DI+ + GG +
Sbjct: 55 -YTACVYHKLFDASDSSSYKHNGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 109
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKD 277
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 110 EVTEMPALPFMLAE--FDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD 165
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E A +S E +P W C++
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVASIK-----AASSTEKFPDGFWLGEQLVCWQ 287
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 288 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 347
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 389
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 112/316 (35%), Gaps = 48/316 (15%)
Query: 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASST 161
LH+ + TP + V +D + LW+ C+ S+ Y +P ST
Sbjct: 22 LHWANLQKRTPLMQVPVLVDLNGNHLWVNCE----QQYSSKTYQ---------APFCHST 68
Query: 162 SKHLSCSHRL--CDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDIL--HLISGGDNAL 217
+ +H+ C + K C + G L ED+L H G L
Sbjct: 69 QCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQL 128
Query: 218 KNSVQA-SVIIGCG---MKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMC 273
V + C + Q G + G+ GLG IS+P+ LA ++ F+ C
Sbjct: 129 GPLVTVPQFLFSCAPSFLVQKGLPRNT---QGVAGLGHAPISLPNQLASHFGLQRQFTTC 185
Query: 274 FDK--DDSGRIFFGDQGPATQQ------------STSFLASNGKYITYIIGVETCC---- 315
+ G I FGD +Q + + G+Y + +
Sbjct: 186 LSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVF 245
Query: 316 ----IGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCY 371
I S+ + TS ++ + + L + VY+ F +Q+ P+ C+
Sbjct: 246 PLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCF 305
Query: 372 KSSSQRLPKLPSVKLM 387
S+ ++ PSV L+
Sbjct: 306 NSN--KINAYPSVDLV 319
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 98/257 (38%), Gaps = 32/257 (12%)
Query: 237 YLDGVAPDGLIGLGLGEISVP--SL------LAKAGLIRNSFSMCFDKDDSGRIFFGDQG 288
+++G +G++GL EI+ P SL L K + N FS+ S I D
Sbjct: 115 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGGGSMIIGGIDHS 174
Query: 289 PATQQS-TSFLASNGKYITYIIGVETCC--IGSSCLKQTSFKAIVDSGSSFTFLPKEVYE 345
T + + Y I+ VE + C + K+IVDSG++ LPK+V+E
Sbjct: 175 LYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 234
Query: 346 TIAAEFDRQVNDTITSFEGYP---WK----CCYKSSSQRLPKLP--SVKLMXXXXXXXXX 396
+S E +P W C+++ + P S+ LM
Sbjct: 235 AAVKSIK-----AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFR 289
Query: 397 XXXXXXIYGTQV-----VTGFCLAIQPVDGDIGTI-GQNFMTGYRVVFDRENLKLGWSHS 450
Y V C GT+ G M G+ VVFDR ++G++ S
Sbjct: 290 ITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVS 349
Query: 451 NCQDLNDGTKSPLTPGP 467
C ++D ++ GP
Sbjct: 350 ACH-VHDEFRTAAVEGP 365
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 114/293 (38%), Gaps = 67/293 (22%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I +G+ V +D GS LW+ C + N+ + + PS+SS++++L+
Sbjct: 18 IVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLN 77
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVI 226
+ Y + TSS G +D + G ++KN A V
Sbjct: 78 QDFSI-------------------EYGDLTSSQGSFYKDTVGF---GGISIKNQQFADVT 115
Query: 227 IGCGMKQSGGYLDGVAPDGLIGLGLGE--------ISVPSLLAKAGLI-RNSFSMCFDKD 277
G++G+G +VP L K G+I +N++S+ + +
Sbjct: 116 TTS------------VDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSE 163
Query: 278 D--SGRIFFG--DQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSG 333
D +G+I FG D T T+ ++ + +G G+S T+ ++DSG
Sbjct: 164 DASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLG-SINFDGTSV--STNADVVLDSG 220
Query: 334 SSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKL 386
++ T+ ++ A +F R V G W S + +LPS L
Sbjct: 221 TTITYFS----QSTADKFARIV--------GATWD-----SRNEIYRLPSCDL 256
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIP---CDCVRCAPLSASYYNSLDRDLNEYSPSAS 159
++ I IGTP +FLV D GS LW+P C C S ++PS S
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHS------------RFNPSES 61
Query: 160 ST 161
ST
Sbjct: 62 ST 63
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 218 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 272
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 273 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 332
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 333 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 374
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 275
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 276 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 335
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 377
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 226 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 280
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 281 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 340
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 341 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 382
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 220 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 274
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 275 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 334
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 335 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 376
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 217 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 271
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 272 AGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 331
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 332 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 373
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 223 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 277
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 278 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 337
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 338 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 379
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 224 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 278
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 279 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 338
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 339 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 380
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 226 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 280
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 281 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 340
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 341 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 382
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 275
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 276 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 335
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 377
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 223 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 277
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 278 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 337
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 338 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 379
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 220 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 274
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 275 AGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 334
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 335 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 376
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 287
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 288 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 347
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 389
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 275
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 276 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 335
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 377
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 223 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 277
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 278 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 337
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 338 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 379
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 240 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 294
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 295 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 354
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 355 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 396
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 275
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 276 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 335
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 377
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 222 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 276
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 277 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 336
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 337 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 378
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 243 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 297
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 298 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 357
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 358 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 399
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 234 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 288
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 289 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 348
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 349 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 390
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 238 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 292
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQVV-----TGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 293 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 352
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 353 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 394
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 275
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 276 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 335
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 377
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 287
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 288 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 347
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 389
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 236 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 290
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQVV-----TGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 291 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 350
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 351 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 392
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 236 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 290
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 291 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 350
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 351 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 392
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 236 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 290
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQVV-----TGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 291 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 350
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 351 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 392
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 235 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 289
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 290 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 349
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 350 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 391
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 257 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 311
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 312 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 371
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 372 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 413
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 279 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 333
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 334 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 393
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 394 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 435
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 218 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 272
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 273 AGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 332
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 333 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 374
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 287
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQVV-----TGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 288 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 347
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 389
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 287
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 288 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 347
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 389
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 280 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 334
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 335 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 394
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 395 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 436
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 238 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 292
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQVV-----TGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 293 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 352
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 353 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 394
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 280 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 334
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 335 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 394
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 395 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 436
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQVV-----TGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 257 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 311
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQVV-----TGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 312 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 371
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 372 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 413
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 92 TMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDL 151
T + N+ +Y I IGTP SF V D GS LW+ C+ + S +
Sbjct: 3 TEQMKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSS--HCSAQACSNH------- 53
Query: 152 NEYSPSASST 161
N++ P SST
Sbjct: 54 NKFKPRQSST 63
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSCGT 351
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 21/163 (12%)
Query: 320 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 372
C + K+IVDSG + LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGCTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 373 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 425
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 426 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 467
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIP---CDCVRCAPLSASYYNS 146
+Y I IGTP F V D GS LW+P C + A YNS
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNS 61
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 108/304 (35%), Gaps = 52/304 (17%)
Query: 87 SQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNS 146
S GS T + + + T + IGTP + + D GS LW+ + + + Y
Sbjct: 1 STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIY-- 58
Query: 147 LDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDI 206
+PS S+T+K LS + T + + D YT+ S GL V
Sbjct: 59 --------TPSKSTTAKLLSGA-------TWSISYGDGSSSSGDVYTDTVSVGGLTVTG- 102
Query: 207 LHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLL------ 260
QA + K S + + DGL+GL ++ S
Sbjct: 103 ---------------QA---VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFF 144
Query: 261 --AKAGLIRNSFSMCFDKDDSGRIFFG-DQGPATQQSTSFLASNGKYITYIIGVETCCIG 317
AKA L F+ G FG A S ++ A + K + +G
Sbjct: 145 DNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVG 204
Query: 318 SSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQR 377
S K TS I D+G++ +LP V A+ + +S GY + C S
Sbjct: 205 SGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC-----SAT 257
Query: 378 LPKL 381
LP
Sbjct: 258 LPSF 261
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 245 GLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQG---PATQQS---TSFL 298
G+ GL +++PS +A A + N F +C G FG P QS T +
Sbjct: 141 GVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSMDYTPLV 200
Query: 299 ASNGKYITYI----IGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQ 354
A G YI I VE + S + ++ + + L ++VY + F +
Sbjct: 201 AKGGSPAHYISARSIKVENTRVPISERALATGGVMLSTRLPYVLLRRDVYRPLVDAFTKA 260
Query: 355 V 355
+
Sbjct: 261 L 261
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 98 DFGWLHYTW-IDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYS 155
DF Y + IGTP FL+ D GS W+P C + S + +
Sbjct: 14 DFDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRF---------FD 64
Query: 156 PSASSTSK 163
PSASST K
Sbjct: 65 PSASSTFK 72
>pdb|1TYE|B Chain B, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|D Chain D, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|F Chain F, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
Length = 440
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 406 TQVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHS 450
TQ ++GF + G + +G FM Y VFD NL +G++ +
Sbjct: 42 TQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEA 86
>pdb|3NID|B Chain B, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NID|D Chain D, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NIF|B Chain B, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIF|D Chain D, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|B Chain B, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|D Chain D, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
Length = 471
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|3T3M|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3M|D Chain D, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|D Chain D, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
Length = 472
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|2VC2|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist L-739758
pdb|2VDK|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDL|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDM|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Tirofiban
pdb|2VDN|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Eptifibatide
pdb|2VDO|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide, Hhlggakqagdv
pdb|2VDP|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide,Lggakqagdv
pdb|2VDQ|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Hhlggakqrgdv
pdb|2VDR|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Lggakqrgdv
pdb|3FCU|B Chain B, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|D Chain D, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|F Chain F, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
Length = 461
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 102/288 (35%), Gaps = 52/288 (18%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
+ T + IGTP + + D GS LW+ + + + Y +PS S+T+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIY----------TPSKSTTA 66
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
K LS + T + + D YT+ S GL V Q
Sbjct: 67 KLLSGA-------TWSISYGDGSSSSGDVYTDTVSVGGLTVTG----------------Q 103
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLL--------AKAGLIRNSFSMCF 274
A + K S + + DGL+GL ++ S AKA L F+
Sbjct: 104 A---VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADL 160
Query: 275 DKDDSGRIFFG-DQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSG 333
G FG A S ++ A + K + +GS K TS I D+G
Sbjct: 161 GYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTG 220
Query: 334 SSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKL 381
++ +LP V A+ + +S GY + C S LP
Sbjct: 221 TTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC-----SATLPSF 261
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 97/249 (38%), Gaps = 41/249 (16%)
Query: 226 IIGCGMKQSGGYLDGVAPDGLIGLGLGEISV-------PSLLAKAGLIRNSFSMCFDKDD 278
+ G KQ G DG++G+ ISV +L+ + + +N FS +D
Sbjct: 9 VFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDP 68
Query: 279 SGR-----IFFGDQGPATQQSTSFLASNGK--YITYIIGVETCCIGSSCLKQTSFKAIVD 331
+ + G + S S+L K + ++ VE + C + +AIVD
Sbjct: 69 DAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLC--KEGCEAIVD 126
Query: 332 SGSSFTFLP----KEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLM 387
+G+S P +E+ + I A + +G C K S+ LP++ L
Sbjct: 127 TGTSLMVGPVDEVRELQKAIGA---------VPLIQGEYMIPCEKVST-----LPAITL- 171
Query: 388 XXXXXXXXXXXXXXXIYGTQVVTGFCLA------IQPVDGDIGTIGQNFMTGYRVVFDRE 441
+ +Q CL+ I P G + +G F+ Y VFDR+
Sbjct: 172 KLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRD 231
Query: 442 NLKLGWSHS 450
N ++G++ +
Sbjct: 232 NNRVGFAEA 240
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 50/181 (27%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIP---CDCVRCAPLSASYYNSLDRDLNEYSPSASSTSK 163
I +GTP F V D GS W+P C C ++ + P SST +
Sbjct: 20 IYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC------------KNHQRFDPRKSSTFQ 67
Query: 164 HLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQA 223
+L P ++ Y T S G+L D + + N V
Sbjct: 68 NLG------------------KPLSIHYGT--GSMQGILGYDTV--------TVSNIVDI 99
Query: 224 SVIIGCGMKQSGGYLDGVAPDGLIGLGL----GEISVP---SLLAKAGLIRNSFSMCFDK 276
+G ++ G + DG++G+ E S+P +++ + + ++ FS+ D+
Sbjct: 100 QQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDR 159
Query: 277 D 277
+
Sbjct: 160 N 160
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 107/304 (35%), Gaps = 51/304 (16%)
Query: 87 SQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNS 146
S GS T + + + T + IGTP + + D GS LW+ + +
Sbjct: 1 STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQ---- 56
Query: 147 LDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDI 206
Y+PS S+T+K LS + T + + D YT+ S GL V
Sbjct: 57 -----TIYTPSKSTTAKLLSGA-------TWSISYGDGSSSSGDVYTDTVSVGGLTVTG- 103
Query: 207 LHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLL------ 260
QA + K S + + DGL+GL ++ S
Sbjct: 104 ---------------QA---VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFF 145
Query: 261 --AKAGLIRNSFSMCFDKDDSGRIFFG-DQGPATQQSTSFLASNGKYITYIIGVETCCIG 317
AKA L F+ G FG A S ++ A + K + +G
Sbjct: 146 DNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVG 205
Query: 318 SSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQR 377
S K TS I D+G++ +LP V A+ + +S GY + C S
Sbjct: 206 SGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC-----SAT 258
Query: 378 LPKL 381
LP
Sbjct: 259 LPSF 262
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 107/304 (35%), Gaps = 51/304 (16%)
Query: 87 SQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNS 146
S GS T + + + T + IGTP + + D GS LW+ + +
Sbjct: 1 STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQ---- 56
Query: 147 LDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDI 206
Y+PS S+T+K LS + T + + D YT+ S GL V
Sbjct: 57 -----TIYTPSKSTTAKLLSGA-------TWSISYGDGSSSSGDVYTDTVSVGGLTVTG- 103
Query: 207 LHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLL------ 260
QA + K S + + DGL+GL ++ S
Sbjct: 104 ---------------QA---VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQXKTFF 145
Query: 261 --AKAGLIRNSFSMCFDKDDSGRIFFG-DQGPATQQSTSFLASNGKYITYIIGVETCCIG 317
AKA L F+ G FG A S ++ A + K + +G
Sbjct: 146 DNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVG 205
Query: 318 SSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQR 377
S K TS I D+G++ +LP V A+ + +S GY + C S
Sbjct: 206 SGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC-----SAT 258
Query: 378 LPKL 381
LP
Sbjct: 259 LPSF 262
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 98 DFGWLHYTW-IDIGTPNVSFLVALDAGSDLLWIP---CD----CVR---CAPLSASYYNS 146
DF Y + IGTP F + D GS W+P CD CV P S+S +
Sbjct: 14 DFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKE 73
Query: 147 LDRDLN 152
D +LN
Sbjct: 74 TDYNLN 79
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 80/380 (21%), Positives = 134/380 (35%), Gaps = 91/380 (23%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIP---CDCVRCAPLSASYYNSLDRDLNEYSPSAS 159
++ I IG+P +F V D GS LW+P C C + + + PS S
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPAC------------KTHSRFQPSQS 72
Query: 160 STSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKN 219
ST P Q +++ Y T S SG++ D +
Sbjct: 73 STYSQ----------------PGQ--SFSIQYGT--GSLSGIIGAD------------QV 100
Query: 220 SVQASVIIGCGMKQS----GGYLDGVAPDGLIGLGLGEISV-------PSLLAKAGLIRN 268
SV+ ++G +S G DG++GLG ++V +++A+ +
Sbjct: 101 SVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLP 160
Query: 269 SFSMCFDKDDSG----RIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-Q 323
FS+ + G + FG + + K + I ++ +G + +
Sbjct: 161 MFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMFCS 220
Query: 324 TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPS 383
+AIVD+G+S P + +Q+ + I + P Y L +P
Sbjct: 221 EGCQAIVDTGTSLITGPSDKI--------KQLQNAIGA---APVDGEYAVECANLNVMPD 269
Query: 384 VKLMXXXXXXXXXXXXXXXIYGTQVVTG--FC------LAIQPVDGDIGTIGQNFMTGYR 435
V + V G FC L I P G + +G F+ +
Sbjct: 270 VTFTINGVPYTLSPTAYTLL---DFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFY 326
Query: 436 VVFDRENLKLG------WSH 449
VFDR N ++G WSH
Sbjct: 327 SVFDRGNNRVGLAPAVPWSH 346
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 46/258 (17%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I +G+ V +D GS LW+P V C N ++ YSPS+SS+S++L+
Sbjct: 18 ITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPN-FCKNEGTYSPSSSSSSQNLN 76
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHL--ISGGDNALKNSVQAS 224
P++++ Y + T+S G +D + IS + S
Sbjct: 77 ------------------SPFSIE-YGDGTTSQGTWYKDTIGFGGISITKQQFADVTSTS 117
Query: 225 V---IIGCGMK--QSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLI-RNSFSMCFD--K 276
V I+G G K ++ G D +VP L G+I +N++S+ + +
Sbjct: 118 VDQGILGIGYKTHEAEGNYD---------------NVPVTLKNQGIISKNAYSLYLNSRQ 162
Query: 277 DDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSF 336
SG+I FG A T I + T + + ++DSG++
Sbjct: 163 ATSGQIIFGGVDNAKYSGTLIALPVTSDNELRIHLNTVKVAGQSIN-ADVDVLLDSGTTI 221
Query: 337 TFLPKEVYETIAAEFDRQ 354
T+L + V + + + F+ Q
Sbjct: 222 TYLQQGVADQVISAFNGQ 239
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 50/181 (27%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIP---CDCVRCAPLSASYYNSLDRDLNEYSPSASSTSK 163
I +GTP F V D GS W+P C C ++ + P SST +
Sbjct: 20 IYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC------------KNHQRFDPRKSSTFQ 67
Query: 164 HLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQA 223
+L P ++ Y T S G+L D + + N V
Sbjct: 68 NLG------------------KPLSIHYGT--GSMQGILGYDTV--------TVSNIVDI 99
Query: 224 SVIIGCGMKQSGGYLDGVAPDGLIGLGL----GEISVP---SLLAKAGLIRNSFSMCFDK 276
+G ++ G DG++G+ E S+P +++ + + ++ FS+ D+
Sbjct: 100 QQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDR 159
Query: 277 D 277
+
Sbjct: 160 N 160
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 109 IGTPNVSFLVALDAGSDLLWIP---CDCVRCA 137
IGT F+ D GS LW+P CD + C+
Sbjct: 22 IGTNKQPFMFIFDTGSANLWVPSVNCDSIGCS 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,543,110
Number of Sequences: 62578
Number of extensions: 608646
Number of successful extensions: 1442
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1332
Number of HSP's gapped (non-prelim): 195
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)