Query 009593
Match_columns 531
No_of_seqs 382 out of 1742
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 14:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.5E-65 3.2E-70 540.3 43.0 397 15-454 13-430 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 5.1E-56 1.1E-60 465.3 36.4 338 95-453 39-397 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 3E-54 6.5E-59 456.8 35.4 315 89-455 107-451 (482)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 2.7E-54 5.8E-59 441.6 32.7 305 97-449 1-325 (325)
5 cd05478 pepsin_A Pepsin A, asp 100.0 4.2E-54 9.1E-59 438.6 33.0 302 94-449 2-317 (317)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 7.3E-54 1.6E-58 438.3 31.5 303 101-453 2-326 (326)
7 cd06098 phytepsin Phytepsin, a 100.0 3.3E-53 7.2E-58 431.7 32.6 296 93-449 1-317 (317)
8 cd05487 renin_like Renin stimu 100.0 3.8E-53 8.2E-58 433.1 32.7 306 95-450 1-326 (326)
9 cd05488 Proteinase_A_fungi Fun 100.0 4.4E-53 9.6E-58 431.5 32.0 304 93-449 1-320 (320)
10 cd05485 Cathepsin_D_like Cathe 100.0 6.9E-53 1.5E-57 431.5 32.4 308 94-449 3-329 (329)
11 cd05486 Cathespin_E Cathepsin 100.0 7.1E-53 1.5E-57 429.3 30.8 297 103-449 1-316 (316)
12 cd05472 cnd41_like Chloroplast 100.0 1.1E-52 2.3E-57 424.8 31.8 286 102-452 1-299 (299)
13 cd05477 gastricsin Gastricsins 100.0 1.8E-52 4E-57 426.7 33.4 298 100-450 1-318 (318)
14 cd05489 xylanase_inhibitor_I_l 100.0 3.7E-51 8.1E-56 421.9 32.3 313 109-450 2-361 (362)
15 PTZ00147 plasmepsin-1; Provisi 100.0 9.8E-51 2.1E-55 426.9 33.9 311 88-451 125-450 (453)
16 cd05473 beta_secretase_like Be 100.0 1.7E-50 3.7E-55 419.6 31.9 318 101-458 2-353 (364)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.8E-49 3.8E-54 416.6 34.4 312 87-451 123-449 (450)
18 cd05475 nucellin_like Nucellin 100.0 1.6E-49 3.4E-54 396.2 31.0 260 102-452 2-273 (273)
19 cd06097 Aspergillopepsin_like 100.0 2.8E-48 6.1E-53 388.5 28.5 266 103-449 1-278 (278)
20 cd05476 pepsin_A_like_plant Ch 100.0 6.3E-48 1.4E-52 383.2 28.2 247 102-452 1-265 (265)
21 PF00026 Asp: Eukaryotic aspar 100.0 2.7E-47 5.9E-52 388.1 22.9 299 102-450 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 1.1E-45 2.4E-50 372.9 29.1 267 102-450 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 2.9E-44 6.3E-49 359.6 29.9 267 103-449 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.2E-30 2.6E-35 239.7 13.8 157 103-286 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 8.7E-25 1.9E-29 200.6 13.6 142 306-449 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 2.4E-22 5.3E-27 171.9 12.4 107 105-249 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.6 0.00026 5.7E-09 58.1 8.0 92 102-251 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.2 0.19 4.1E-06 43.5 9.9 35 95-131 4-38 (121)
29 cd05479 RP_DDI RP_DDI; retrope 95.2 0.23 4.9E-06 43.2 10.2 27 421-447 98-124 (124)
30 TIGR02281 clan_AA_DTGA clan AA 94.8 0.61 1.3E-05 40.4 11.8 35 305-347 10-44 (121)
31 PF13650 Asp_protease_2: Aspar 94.5 0.3 6.4E-06 39.2 8.8 24 106-131 2-25 (90)
32 PF08284 RVP_2: Retroviral asp 93.5 0.15 3.3E-06 45.0 5.5 28 423-450 105-132 (135)
33 cd05479 RP_DDI RP_DDI; retrope 93.5 0.73 1.6E-05 40.0 9.7 31 100-132 14-44 (124)
34 TIGR03698 clan_AA_DTGF clan AA 92.6 0.69 1.5E-05 39.1 8.0 24 422-445 84-107 (107)
35 cd05484 retropepsin_like_LTR_2 91.0 0.28 6.1E-06 39.9 3.7 27 103-131 1-27 (91)
36 PF11925 DUF3443: Protein of u 85.7 10 0.00023 38.8 11.5 28 104-131 25-57 (370)
37 PF13975 gag-asp_proteas: gag- 83.5 2.4 5.1E-05 32.9 4.7 31 100-132 6-36 (72)
38 PF12384 Peptidase_A2B: Ty3 tr 81.5 6.9 0.00015 35.4 7.3 23 325-347 45-67 (177)
39 PF00077 RVP: Retroviral aspar 80.5 2.6 5.5E-05 34.7 4.2 26 104-131 7-32 (100)
40 PF13650 Asp_protease_2: Aspar 80.1 2.5 5.5E-05 33.6 4.0 29 314-347 3-31 (90)
41 PF13975 gag-asp_proteas: gag- 77.2 4.3 9.3E-05 31.4 4.3 29 314-347 13-41 (72)
42 PF09668 Asp_protease: Asparty 76.5 12 0.00025 32.6 7.1 29 314-347 29-57 (124)
43 cd05484 retropepsin_like_LTR_2 76.3 4.2 9.1E-05 32.9 4.2 30 313-347 4-33 (91)
44 cd05482 HIV_retropepsin_like R 70.6 5.9 0.00013 32.1 3.7 24 106-131 2-25 (87)
45 cd05483 retropepsin_like_bacte 69.7 8.5 0.00019 30.8 4.6 29 314-347 7-35 (96)
46 cd06094 RP_Saci_like RP_Saci_l 65.0 43 0.00092 27.2 7.4 20 324-343 8-27 (89)
47 cd06095 RP_RTVL_H_like Retrope 60.9 11 0.00024 30.1 3.6 24 106-131 2-25 (86)
48 cd06095 RP_RTVL_H_like Retrope 60.2 12 0.00027 29.9 3.7 29 314-347 3-31 (86)
49 cd05480 NRIP_C NRIP_C; putativ 58.2 87 0.0019 26.1 8.2 31 412-442 72-103 (103)
50 PF00077 RVP: Retroviral aspar 52.7 14 0.0003 30.2 3.0 26 313-343 9-34 (100)
51 COG3577 Predicted aspartyl pro 49.1 57 0.0012 30.8 6.5 35 304-346 103-137 (215)
52 KOG0012 DNA damage inducible p 49.0 61 0.0013 33.2 7.2 41 412-452 307-348 (380)
53 cd05481 retropepsin_like_LTR_1 48.7 21 0.00046 29.1 3.4 30 314-347 3-32 (93)
54 PF09668 Asp_protease: Asparty 44.5 17 0.00038 31.5 2.3 35 101-137 23-58 (124)
55 COG5550 Predicted aspartyl pro 42.5 18 0.00039 31.2 2.0 20 328-347 29-49 (125)
56 PF02160 Peptidase_A3: Caulifl 41.9 84 0.0018 29.7 6.5 28 422-450 91-118 (201)
57 COG3577 Predicted aspartyl pro 38.1 64 0.0014 30.5 5.1 81 89-212 92-173 (215)
58 PF12384 Peptidase_A2B: Ty3 tr 30.2 67 0.0015 29.2 3.7 27 105-131 35-61 (177)
59 TIGR03698 clan_AA_DTGF clan AA 22.5 1.1E+02 0.0025 25.5 3.6 27 105-131 2-33 (107)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.5e-65 Score=540.33 Aligned_cols=397 Identities=24% Similarity=0.405 Sum_probs=307.1
Q ss_pred HhhcccccccccceEEEEeecChhhhhcccCCCCCCCCCCCCCcHHHHHHHhcchHhhhhhhcCCCccccccCCCCceee
Q 009593 15 LLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLSSDVQKQKMKTGPQFQMLFPSQGSKTMS 94 (531)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~hr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (531)
+.++...+...+++++|+||+++++|++. +.....+.++++++++++|++....... .. ..+.
T Consensus 13 ~~~~~~~~~~~~~~~~l~h~~~~~sp~~~----------~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~----~~~~ 75 (431)
T PLN03146 13 SELSAAEAPKGGFTVDLIHRDSPKSPFYN----------PSETPSQRLRNAFRRSISRVNHFRPTDA---SP----NDPQ 75 (431)
T ss_pred hhhhhccccCCceEEEEEeCCCCCCCCCC----------CCCChhHHHHHHHHHHHHHHHHHhhccc---cC----Cccc
Confidence 33443355778899999999999998754 2222345666777777666544322111 00 0111
Q ss_pred cC-CCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCC
Q 009593 95 LG-NDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLC 172 (531)
Q Consensus 95 l~-~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C 172 (531)
.+ ...+..|+++|.||||||++.|++||||+++||+|. |..|..+. .+.|||++|+||+.++|+++.|
T Consensus 76 ~~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~----------~~~fdps~SST~~~~~C~s~~C 145 (431)
T PLN03146 76 SDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV----------SPLFDPKKSSTYKDVSCDSSQC 145 (431)
T ss_pred cCcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC----------CCcccCCCCCCCcccCCCCccc
Confidence 11 122568999999999999999999999999999997 88887543 3799999999999999999999
Q ss_pred CCCC---CCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeec
Q 009593 173 DLGT---SCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGL 249 (531)
Q Consensus 173 ~~~~---~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGL 249 (531)
+... .|..+ +.|.|.+.|+|| +.+.|.+++|+|+|++..+.. ...+++.|||++.+.|.|.. ..+|||||
T Consensus 146 ~~~~~~~~c~~~-~~c~y~i~Ygdg-s~~~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~~~~g~f~~--~~~GilGL 218 (431)
T PLN03146 146 QALGNQASCSDE-NTCTYSYSYGDG-SFTKGNLAVETLTIGSTSGRP---VSFPGIVFGCGHNNGGTFDE--KGSGIVGL 218 (431)
T ss_pred ccCCCCCCCCCC-CCCeeEEEeCCC-CceeeEEEEEEEEeccCCCCc---ceeCCEEEeCCCCCCCCccC--CCceeEec
Confidence 8642 37554 469999999997 678999999999998753211 35679999999988876532 46899999
Q ss_pred CCCCCChHHHHHhcCCCCCcEEEeeecC-----CCCcEEECCCCCCC---CeeeeeeecCCCceeEEEEeeEEEeCCeEe
Q 009593 250 GLGEISVPSLLAKAGLIRNSFSMCFDKD-----DSGRIFFGDQGPAT---QQSTSFLASNGKYITYIIGVETCCIGSSCL 321 (531)
Q Consensus 250 G~~~~S~~~~L~~~g~i~~~FS~~L~~~-----~~G~l~fGg~d~~~---~~~~~~v~~~~~~~~y~V~l~~i~Vgg~~~ 321 (531)
|++.+|+++||... +.++|||||.+. ..|.|+||+..... ..++|+++... ..+|.|+|++|+||++.+
T Consensus 219 G~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l 295 (431)
T PLN03146 219 GGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKL 295 (431)
T ss_pred CCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEEC
Confidence 99999999998753 557999999641 36999999853221 23566664433 379999999999999987
Q ss_pred ecCc--------ceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcE
Q 009593 322 KQTS--------FKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNS 393 (531)
Q Consensus 322 ~~~~--------~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~ 393 (531)
.... ..+||||||++++||+++|++|+++|.++++..+.......++.||..... ..+|+|+|+| +|.+
T Consensus 296 ~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F-~Ga~ 372 (431)
T PLN03146 296 PYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHF-TGAD 372 (431)
T ss_pred cCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEE-CCCe
Confidence 6322 369999999999999999999999999998765433333456789975432 4789999999 5889
Q ss_pred EEEcCCeEEEEeccccceEEEEEEecCCCceeeCccceeceEEEEeCCCCEEEEeeCCCCC
Q 009593 394 FVVNNPVFVIYGTQVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNCQD 454 (531)
Q Consensus 394 ~~i~~~~y~~~~~~~~~~~Cl~i~~~~~~~~ILG~~fl~~~yvvFD~e~~riGfa~~~C~~ 454 (531)
+.|++++|++...+ +.+|+++.... +.||||+.|||++|+|||++++||||++.+|++
T Consensus 373 ~~l~~~~~~~~~~~--~~~Cl~~~~~~-~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 373 VKLQPLNTFVKVSE--DLVCFAMIPTS-SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred eecCcceeEEEcCC--CcEEEEEecCC-CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 99999999987654 56899988764 469999999999999999999999999999975
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-56 Score=465.28 Aligned_cols=338 Identities=30% Similarity=0.517 Sum_probs=277.1
Q ss_pred cCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecC-CC-CCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCC
Q 009593 95 LGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CV-RCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLC 172 (531)
Q Consensus 95 l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~-~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C 172 (531)
+..+...+||++|.||||||+|.|++||||+++||+|. |. .|..+. .+.|+|++|+||+.++|++..|
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~----------~~~f~p~~SSt~~~~~c~~~~c 108 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQH----------NPIFDPSASSTYKSVGCSSPRC 108 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccC----------CCccCccccccccccCCCCccc
Confidence 34555678999999999999999999999999999997 88 676542 1459999999999999999999
Q ss_pred CCCCCCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCC-CCCCeeeecCC
Q 009593 173 DLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDG-VAPDGLIGLGL 251 (531)
Q Consensus 173 ~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~-~~~dGIlGLG~ 251 (531)
.....|...++.|.|.+.|+|| +.++|++++|+|+|++.+ ....+++.|||+..+.+. +.. .++|||||||+
T Consensus 109 ~~~~~~~~~~~~C~y~i~Ygd~-~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~ 181 (398)
T KOG1339|consen 109 KSLPQSCSPNSSCPYSIQYGDG-SSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGR 181 (398)
T ss_pred cccccCcccCCcCceEEEeCCC-CceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccccccceEeecCC
Confidence 9986655556789999999996 689999999999999842 135678999999999887 333 57899999999
Q ss_pred CCCChHHHHHhcCCCCCcEEEeeecC-----CCCcEEECCCCCCCCe-eeeeeecCCCc-eeEEEEeeEEEeCCeE----
Q 009593 252 GEISVPSLLAKAGLIRNSFSMCFDKD-----DSGRIFFGDQGPATQQ-STSFLASNGKY-ITYIIGVETCCIGSSC---- 320 (531)
Q Consensus 252 ~~~S~~~~L~~~g~i~~~FS~~L~~~-----~~G~l~fGg~d~~~~~-~~~~v~~~~~~-~~y~V~l~~i~Vgg~~---- 320 (531)
+++|++.|+...+...++||+||.++ .+|.|+||+.|...+. .+.|+|+.... .+|.|++++|.||++.
T Consensus 182 ~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~ 261 (398)
T KOG1339|consen 182 GSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGS 261 (398)
T ss_pred CCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCc
Confidence 99999999887766666999999976 3799999999999754 46666665552 3999999999999843
Q ss_pred --eecCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcC
Q 009593 321 --LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNN 398 (531)
Q Consensus 321 --~~~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~ 398 (531)
......++|+||||++++||+++|++|.++|...+.. ......++..||...... ..+|.|+|+|.+|+.|.+++
T Consensus 262 ~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~ 338 (398)
T KOG1339|consen 262 SLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPP 338 (398)
T ss_pred ceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCc
Confidence 2223578999999999999999999999999876511 122234566788766432 35999999996699999999
Q ss_pred CeEEEEeccccceEEEEEEecCC--CceeeCccceeceEEEEeCC-CCEEEEee--CCCC
Q 009593 399 PVFVIYGTQVVTGFCLAIQPVDG--DIGTIGQNFMTGYRVVFDRE-NLKLGWSH--SNCQ 453 (531)
Q Consensus 399 ~~y~~~~~~~~~~~Cl~i~~~~~--~~~ILG~~fl~~~yvvFD~e-~~riGfa~--~~C~ 453 (531)
++|+++...+... |+++..... ..||||+.||++++++||+. ++||||++ .+|.
T Consensus 339 ~~y~~~~~~~~~~-Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 339 KNYLVEVSDGGGV-CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred cceEEEECCCCCc-eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9999987653112 998777643 37999999999999999999 99999999 6774
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=3e-54 Score=456.84 Aligned_cols=315 Identities=25% Similarity=0.381 Sum_probs=255.6
Q ss_pred CCceeecCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCC
Q 009593 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCS 168 (531)
Q Consensus 89 ~~~~~~l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~ 168 (531)
+....++.|+.+.+||++|.||||||+|.|++||||+++||+|. .|....|. .++.|||++|+||+.+.+.
T Consensus 107 ~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~--~C~~~~C~-------~~~~yd~s~SSTy~~~~~~ 177 (482)
T PTZ00165 107 QYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK--ECKSGGCA-------PHRKFDPKKSSTYTKLKLG 177 (482)
T ss_pred cccceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch--hcCccccc-------ccCCCCccccCCcEecCCC
Confidence 34568899999999999999999999999999999999999995 44333333 3479999999999985421
Q ss_pred CCCCCCCCCCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeee
Q 009593 169 HRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIG 248 (531)
Q Consensus 169 ~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlG 248 (531)
. ....+.+.|++| +..|.+++|+|+|++. .++++.|||++.+++..+...++|||||
T Consensus 178 ~-------------~~~~~~i~YGsG--s~~G~l~~DtV~ig~l--------~i~~q~FG~a~~~s~~~f~~~~~DGILG 234 (482)
T PTZ00165 178 D-------------ESAETYIQYGTG--ECVLALGKDTVKIGGL--------KVKHQSIGLAIEESLHPFADLPFDGLVG 234 (482)
T ss_pred C-------------ccceEEEEeCCC--cEEEEEEEEEEEECCE--------EEccEEEEEEEeccccccccccccceee
Confidence 0 112577999998 6789999999999875 6789999999998776555567899999
Q ss_pred cCCCCC---------ChHHHHHhcCCC-CCcEEEeeecC--CCCcEEECCCCCCCC---eeeeeeecCCCceeEEEEeeE
Q 009593 249 LGLGEI---------SVPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPATQ---QSTSFLASNGKYITYIIGVET 313 (531)
Q Consensus 249 LG~~~~---------S~~~~L~~~g~i-~~~FS~~L~~~--~~G~l~fGg~d~~~~---~~~~~v~~~~~~~~y~V~l~~ 313 (531)
||++.+ ++..+|++||+| ++.||+||.++ .+|.|+|||+|+.+. +.+.|+|+... .+|+|++++
T Consensus 235 Lg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~-~yW~i~l~~ 313 (482)
T PTZ00165 235 LGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST-DYWEIEVVD 313 (482)
T ss_pred cCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc-ceEEEEeCe
Confidence 999875 235679999999 79999999764 469999999998754 47899998775 899999999
Q ss_pred EEeCCeEee--cCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCC
Q 009593 314 CCIGSSCLK--QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQN 391 (531)
Q Consensus 314 i~Vgg~~~~--~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg 391 (531)
|.||++.+. ...+.+|+||||+++++|+++|++|.+++ +.. .+|.....+|+|+|+| +|
T Consensus 314 i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i----~~~--------------~~C~~~~~lP~itf~f-~g 374 (482)
T PTZ00165 314 ILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKI----PLE--------------EDCSNKDSLPRISFVL-ED 374 (482)
T ss_pred EEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHc----CCc--------------ccccccccCCceEEEE-CC
Confidence 999998765 35678999999999999999988776654 221 1455556899999999 44
Q ss_pred c-----EEEEcCCeEEEEec--cccceEEE-EEEecC-----CCceeeCccceeceEEEEeCCCCEEEEeeCCCCCC
Q 009593 392 N-----SFVVNNPVFVIYGT--QVVTGFCL-AIQPVD-----GDIGTIGQNFMTGYRVVFDRENLKLGWSHSNCQDL 455 (531)
Q Consensus 392 ~-----~~~i~~~~y~~~~~--~~~~~~Cl-~i~~~~-----~~~~ILG~~fl~~~yvvFD~e~~riGfa~~~C~~~ 455 (531)
. +|.++|++|+++.. ......|+ +++..+ ++.||||++|||+||+|||++|+|||||+++|...
T Consensus 375 ~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 375 VNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred CCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 3 89999999999742 22256894 777532 25799999999999999999999999999998643
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.7e-54 Score=441.59 Aligned_cols=305 Identities=25% Similarity=0.402 Sum_probs=249.3
Q ss_pred CCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 009593 97 NDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLG 175 (531)
Q Consensus 97 ~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~ 175 (531)
|+.+.+||++|.||||+|+|.|++||||+++||+|. |..|. ..| ..++.|+|++|+|++..
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~C-------~~~~~y~~~~SsT~~~~---------- 62 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD-IAC-------WLHHKYNSSKSSTYVKN---------- 62 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC-ccc-------cCcCcCCcccCcceeeC----------
Confidence 467899999999999999999999999999999995 65331 122 23478999999999872
Q ss_pred CCCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCC
Q 009593 176 TSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS 255 (531)
Q Consensus 176 ~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~~S 255 (531)
+|.|.+.|++| ++.|.+++|+|+|++. ...++.|||++++++..+.....|||||||++.++
T Consensus 63 --------~~~~~i~Yg~G--~~~G~~~~D~v~~g~~--------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s 124 (325)
T cd05490 63 --------GTEFAIQYGSG--SLSGYLSQDTVSIGGL--------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRIS 124 (325)
T ss_pred --------CcEEEEEECCc--EEEEEEeeeEEEECCE--------EEcCEEEEEEeeccCCcccceeeeEEEecCCcccc
Confidence 38999999998 5899999999999875 66789999999887754444467999999998765
Q ss_pred h------HHHHHhcCCC-CCcEEEeeecC----CCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEEeCCeEee-
Q 009593 256 V------PSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCCIGSSCLK- 322 (531)
Q Consensus 256 ~------~~~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~Vgg~~~~- 322 (531)
. ..+|+++|+| ++.||+||.++ ..|.|+||++|+.++ +.+.|+++... .+|.|++++|.||++...
T Consensus 125 ~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~-~~w~v~l~~i~vg~~~~~~ 203 (325)
T cd05490 125 VDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK-AYWQIHMDQVDVGSGLTLC 203 (325)
T ss_pred ccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc-eEEEEEeeEEEECCeeeec
Confidence 4 4579999999 79999999864 369999999999875 57888887664 899999999999987543
Q ss_pred cCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCeEE
Q 009593 323 QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFV 402 (531)
Q Consensus 323 ~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~y~ 402 (531)
.....+||||||+++++|+++|++|.+++.. ..... .+|.++|.....+|+|+|+| +|+.|.|+|++|+
T Consensus 204 ~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~----~~~~~------~~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y~ 272 (325)
T cd05490 204 KGGCEAIVDTGTSLITGPVEEVRALQKAIGA----VPLIQ------GEYMIDCEKIPTLPVISFSL-GGKVYPLTGEDYI 272 (325)
T ss_pred CCCCEEEECCCCccccCCHHHHHHHHHHhCC----ccccC------CCEEecccccccCCCEEEEE-CCEEEEEChHHeE
Confidence 3457899999999999999998888777643 11111 13778887777899999999 8899999999999
Q ss_pred EEeccccceEEE-EEEec-----CCCceeeCccceeceEEEEeCCCCEEEEee
Q 009593 403 IYGTQVVTGFCL-AIQPV-----DGDIGTIGQNFMTGYRVVFDRENLKLGWSH 449 (531)
Q Consensus 403 ~~~~~~~~~~Cl-~i~~~-----~~~~~ILG~~fl~~~yvvFD~e~~riGfa~ 449 (531)
++........|+ +++.. ..+.||||+.|||++|+|||++++|||||+
T Consensus 273 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 273 LKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 876432246897 56542 235799999999999999999999999996
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=4.2e-54 Score=438.58 Aligned_cols=302 Identities=25% Similarity=0.425 Sum_probs=254.5
Q ss_pred ecCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCC
Q 009593 94 SLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLC 172 (531)
Q Consensus 94 ~l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C 172 (531)
||.|+.+.+||++|.||||+|++.|+|||||+++||+|. |..| .|. .++.|+|++|+|++..
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~---~c~-------~~~~f~~~~Sst~~~~------- 64 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQ---ACS-------NHNRFNPRQSSTYQST------- 64 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcc---ccc-------ccCcCCCCCCcceeeC-------
Confidence 678999999999999999999999999999999999995 5432 332 3479999999999984
Q ss_pred CCCCCCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCC
Q 009593 173 DLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLG 252 (531)
Q Consensus 173 ~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~ 252 (531)
.|.|++.|++| ++.|.+++|+|+|++. ...++.|||++.+.+.+......|||||||+.
T Consensus 65 -----------~~~~~~~yg~g--s~~G~~~~D~v~ig~~--------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~ 123 (317)
T cd05478 65 -----------GQPLSIQYGTG--SMTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYP 123 (317)
T ss_pred -----------CcEEEEEECCc--eEEEEEeeeEEEECCE--------EECCEEEEEEEecCccccccccccceeeeccc
Confidence 38999999998 5799999999999875 66789999999887766554467999999987
Q ss_pred CCC------hHHHHHhcCCC-CCcEEEeeecC--CCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEEeCCeEee
Q 009593 253 EIS------VPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCCIGSSCLK 322 (531)
Q Consensus 253 ~~S------~~~~L~~~g~i-~~~FS~~L~~~--~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~Vgg~~~~ 322 (531)
.++ +..+|+++|+| ++.||+||.++ ..|.|+||++|+.++ +.+.|+++... .+|.|++++|.|||+.+.
T Consensus 124 ~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~-~~w~v~l~~v~v~g~~~~ 202 (317)
T cd05478 124 SIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE-TYWQITVDSVTINGQVVA 202 (317)
T ss_pred hhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC-cEEEEEeeEEEECCEEEc
Confidence 654 57789999999 79999999876 368999999998874 57888887664 899999999999999886
Q ss_pred c-CcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCeE
Q 009593 323 Q-TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVF 401 (531)
Q Consensus 323 ~-~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~y 401 (531)
. ....+||||||++++||+++|++|.+++... .... .+|.++|.....+|.|+|+| +|+++.|++++|
T Consensus 203 ~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~----~~~~------~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y 271 (317)
T cd05478 203 CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGAS----QNQN------GEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAY 271 (317)
T ss_pred cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCc----cccC------CcEEeCCcCcccCCcEEEEE-CCEEEEECHHHh
Confidence 3 3568999999999999999999988776432 1111 24778898777899999999 789999999999
Q ss_pred EEEeccccceEEE-EEEecC-CCceeeCccceeceEEEEeCCCCEEEEee
Q 009593 402 VIYGTQVVTGFCL-AIQPVD-GDIGTIGQNFMTGYRVVFDRENLKLGWSH 449 (531)
Q Consensus 402 ~~~~~~~~~~~Cl-~i~~~~-~~~~ILG~~fl~~~yvvFD~e~~riGfa~ 449 (531)
+.+. ..+|+ +++..+ .+.||||++|||++|+|||++++|||||+
T Consensus 272 ~~~~----~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 272 ILQD----QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred eecC----CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 9864 45897 566654 36799999999999999999999999996
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=7.3e-54 Score=438.28 Aligned_cols=303 Identities=24% Similarity=0.432 Sum_probs=247.3
Q ss_pred ceEEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 009593 101 WLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQ 179 (531)
Q Consensus 101 ~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 179 (531)
.+||++|.||||+|+|.|+|||||+++||+|. |..|..+. ++.|+|++|+|++.+.|++..|.....|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~----------~~~y~~~~Sst~~~~~C~~~~c~~~~~~~ 71 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM----------EPPYNLNNSITSSILYCDCNKCCYCLSCL 71 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC----------CCCcCcccccccccccCCCccccccCcCC
Confidence 37999999999999999999999999999997 88886432 37899999999999999999997666665
Q ss_pred CCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCC-h--
Q 009593 180 NPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS-V-- 256 (531)
Q Consensus 180 ~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~~S-~-- 256 (531)
+ +.|.|.+.|++| +.+.|.+++|+|+|++..... ......++.|||+..+.+.+... ..|||||||+...+ +
T Consensus 72 ~--~~~~~~i~Y~~g-s~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~~~-~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 72 N--NKCEYSISYSEG-SSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFLTQ-QATGILGLSLTKNNGLPT 146 (326)
T ss_pred C--CcCcEEEEECCC-CceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccccc-ccceEEEccCCcccccCc
Confidence 4 469999999997 678999999999998752110 00122468899999988766443 56999999998753 2
Q ss_pred HH-HHHhcCCC-C--CcEEEeeecCCCCcEEECCCCCCCC-----------eeeeeeecCCCceeEEEEeeEEEeCCeE-
Q 009593 257 PS-LLAKAGLI-R--NSFSMCFDKDDSGRIFFGDQGPATQ-----------QSTSFLASNGKYITYIIGVETCCIGSSC- 320 (531)
Q Consensus 257 ~~-~L~~~g~i-~--~~FS~~L~~~~~G~l~fGg~d~~~~-----------~~~~~v~~~~~~~~y~V~l~~i~Vgg~~- 320 (531)
+. +|.+++.+ . ++||+||+++ .|.|+||++|+.++ ..+.|+++... .+|.|++++|+|+++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~-~~y~v~l~~i~vg~~~~ 224 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK-YYYYVKLEGLSVYGTTS 224 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCC-ceEEEEEEEEEEccccc
Confidence 22 35566555 3 8999999975 79999999998764 36778887765 8999999999999985
Q ss_pred --eecCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcC
Q 009593 321 --LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNN 398 (531)
Q Consensus 321 --~~~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~ 398 (531)
.......+||||||++++||+++|++|.+++ |+|+|+|++|.+++++|
T Consensus 225 ~~~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i~p 274 (326)
T cd06096 225 NSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDWKP 274 (326)
T ss_pred ceecccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEECH
Confidence 2235678999999999999999999887655 88999996589999999
Q ss_pred CeEEEEeccccceEEEEEEecCCCceeeCccceeceEEEEeCCCCEEEEeeCCCC
Q 009593 399 PVFVIYGTQVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNCQ 453 (531)
Q Consensus 399 ~~y~~~~~~~~~~~Cl~i~~~~~~~~ILG~~fl~~~yvvFD~e~~riGfa~~~C~ 453 (531)
++|++.... ...|+++... ++.+|||++|||++|+|||++++|||||+++|.
T Consensus 275 ~~y~~~~~~--~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 275 SSYLYKKES--FWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred HHhccccCC--ceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999987653 3345555544 468999999999999999999999999999994
No 7
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=3.3e-53 Score=431.74 Aligned_cols=296 Identities=25% Similarity=0.416 Sum_probs=243.0
Q ss_pred eecCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCC-CcccccccCCCCCCCCCCCCCCCCccccCCCCC
Q 009593 93 MSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAP-LSASYYNSLDRDLNEYSPSASSTSKHLSCSHRL 171 (531)
Q Consensus 93 ~~l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~-~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~ 171 (531)
+++.|+.+.+||++|.||||+|+|.|++||||+++||+|. .|.. ..|. .++.|+|++|+|++..
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~C~~~~~C~-------~~~~y~~~~SsT~~~~------ 65 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS--KCYFSIACY-------FHSKYKSSKSSTYKKN------ 65 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecC--CCCCCcccc-------ccCcCCcccCCCcccC------
Confidence 3577899999999999999999999999999999999995 3321 1221 3478999999999874
Q ss_pred CCCCCCCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCC
Q 009593 172 CDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGL 251 (531)
Q Consensus 172 C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~ 251 (531)
.+.+.+.|++| .+.|.+++|+|+|++. ...++.|||++.+.+..+....+|||||||+
T Consensus 66 ------------~~~~~i~Yg~G--~~~G~~~~D~v~ig~~--------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~ 123 (317)
T cd06098 66 ------------GTSASIQYGTG--SISGFFSQDSVTVGDL--------VVKNQVFIEATKEPGLTFLLAKFDGILGLGF 123 (317)
T ss_pred ------------CCEEEEEcCCc--eEEEEEEeeEEEECCE--------EECCEEEEEEEecCCccccccccceeccccc
Confidence 37899999998 5799999999999875 6679999999987654344456799999999
Q ss_pred CCCCh------HHHHHhcCCC-CCcEEEeeecC----CCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEEeCCe
Q 009593 252 GEISV------PSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCCIGSS 319 (531)
Q Consensus 252 ~~~S~------~~~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~Vgg~ 319 (531)
...+. ..+|+++|+| ++.||+||.++ ..|.|+||++|+.++ +.+.|+|+... .+|.|++++|.||++
T Consensus 124 ~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~-~~w~v~l~~i~v~g~ 202 (317)
T cd06098 124 QEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK-GYWQFEMGDVLIGGK 202 (317)
T ss_pred cchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC-cEEEEEeCeEEECCE
Confidence 87654 4569999999 78999999864 469999999999875 57888888654 799999999999998
Q ss_pred Eee--cCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEc
Q 009593 320 CLK--QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVN 397 (531)
Q Consensus 320 ~~~--~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~ 397 (531)
.+. .....+||||||++++||+++++++ . +.++|.....+|+|+|+| +|+++.|+
T Consensus 203 ~~~~~~~~~~aivDTGTs~~~lP~~~~~~i----~------------------~~~~C~~~~~~P~i~f~f-~g~~~~l~ 259 (317)
T cd06098 203 STGFCAGGCAAIADSGTSLLAGPTTIVTQI----N------------------SAVDCNSLSSMPNVSFTI-GGKTFELT 259 (317)
T ss_pred EeeecCCCcEEEEecCCcceeCCHHHHHhh----h------------------ccCCccccccCCcEEEEE-CCEEEEEC
Confidence 764 2456799999999999999986544 2 234565556899999999 88999999
Q ss_pred CCeEEEEeccccceEEE-EEEec-----CCCceeeCccceeceEEEEeCCCCEEEEee
Q 009593 398 NPVFVIYGTQVVTGFCL-AIQPV-----DGDIGTIGQNFMTGYRVVFDRENLKLGWSH 449 (531)
Q Consensus 398 ~~~y~~~~~~~~~~~Cl-~i~~~-----~~~~~ILG~~fl~~~yvvFD~e~~riGfa~ 449 (531)
+++|+++...+....|+ +++.. .++.||||++|||++|+|||++|+|||||+
T Consensus 260 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 260 PEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred hHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 99999876543346896 56532 124799999999999999999999999996
No 8
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.8e-53 Score=433.12 Aligned_cols=306 Identities=23% Similarity=0.414 Sum_probs=249.6
Q ss_pred cCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCC
Q 009593 95 LGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCD 173 (531)
Q Consensus 95 l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~ 173 (531)
|.|+.+.+||++|.||||+|++.|++||||+++||+|. |..|. ..|. .++.|+|++|+|++..
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~c~-------~~~~y~~~~SsT~~~~-------- 64 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLY-TACV-------THNLYDASDSSTYKEN-------- 64 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcc-hhhc-------ccCcCCCCCCeeeeEC--------
Confidence 35788999999999999999999999999999999985 65431 1222 3479999999999973
Q ss_pred CCCCCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCC
Q 009593 174 LGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE 253 (531)
Q Consensus 174 ~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~ 253 (531)
.|.|++.|++| +++|.+++|+|+|++. .. ++.|||+....+.-+.....|||||||++.
T Consensus 65 ----------~~~~~~~Yg~g--~~~G~~~~D~v~~g~~--------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~ 123 (326)
T cd05487 65 ----------GTEFTIHYASG--TVKGFLSQDIVTVGGI--------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPK 123 (326)
T ss_pred ----------CEEEEEEeCCc--eEEEEEeeeEEEECCE--------Ee-eEEEEEEEeccCCccceeecceEEecCChh
Confidence 49999999998 5899999999999865 33 578999987653222233579999999986
Q ss_pred CC------hHHHHHhcCCC-CCcEEEeeecC----CCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEEeCCeEe
Q 009593 254 IS------VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCCIGSSCL 321 (531)
Q Consensus 254 ~S------~~~~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~Vgg~~~ 321 (531)
.+ +..+|++||+| +++||+||.++ ..|.|+||++|+.++ +.+.|++.... .+|.|++++|.|+++.+
T Consensus 124 ~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~-~~w~v~l~~i~vg~~~~ 202 (326)
T cd05487 124 QAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT-GFWQIQMKGVSVGSSTL 202 (326)
T ss_pred hcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC-ceEEEEecEEEECCEEE
Confidence 54 35569999999 79999999864 369999999999885 47788887654 89999999999999987
Q ss_pred e-cCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCe
Q 009593 322 K-QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPV 400 (531)
Q Consensus 322 ~-~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~ 400 (531)
. .....+||||||++++||+++|+++++++... .. . .+|.++|+....+|+|+|+| ++.++.|++++
T Consensus 203 ~~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~----~~-~------~~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~ 270 (326)
T cd05487 203 LCEDGCTAVVDTGASFISGPTSSISKLMEALGAK----ER-L------GDYVVKCNEVPTLPDISFHL-GGKEYTLSSSD 270 (326)
T ss_pred ecCCCCEEEECCCccchhCcHHHHHHHHHHhCCc----cc-C------CCEEEeccccCCCCCEEEEE-CCEEEEeCHHH
Confidence 5 34568999999999999999998887776422 21 1 13778888777899999999 88999999999
Q ss_pred EEEEeccccceEEE-EEEec-----CCCceeeCccceeceEEEEeCCCCEEEEeeC
Q 009593 401 FVIYGTQVVTGFCL-AIQPV-----DGDIGTIGQNFMTGYRVVFDRENLKLGWSHS 450 (531)
Q Consensus 401 y~~~~~~~~~~~Cl-~i~~~-----~~~~~ILG~~fl~~~yvvFD~e~~riGfa~~ 450 (531)
|+++..+.....|+ +++.. .++.||||++|||++|+|||++++|||||++
T Consensus 271 yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 271 YVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred hEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 99876543356895 67653 2257999999999999999999999999985
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=4.4e-53 Score=431.50 Aligned_cols=304 Identities=25% Similarity=0.416 Sum_probs=251.2
Q ss_pred eecCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCC
Q 009593 93 MSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLC 172 (531)
Q Consensus 93 ~~l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C 172 (531)
+++.|+.+.+||++|.||||+|++.|++||||+++||+|. .|....|. .++.|+|++|+|++.
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~--~C~~~~C~-------~~~~y~~~~Sst~~~-------- 63 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV--KCGSIACF-------LHSKYDSSASSTYKA-------- 63 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC--CCCCcccC-------CcceECCCCCcceee--------
Confidence 3577888999999999999999999999999999999995 34333332 236899999999987
Q ss_pred CCCCCCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCC
Q 009593 173 DLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLG 252 (531)
Q Consensus 173 ~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~ 252 (531)
+.|.|.+.|++| +++|.+++|+|+|++. ...++.|||+..+.+..+.....|||||||+.
T Consensus 64 ----------~~~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~ 123 (320)
T cd05488 64 ----------NGTEFKIQYGSG--SLEGFVSQDTLSIGDL--------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYD 123 (320)
T ss_pred ----------CCCEEEEEECCc--eEEEEEEEeEEEECCE--------EECCEEEEEEecCCCcceeeeeeceEEecCCc
Confidence 358999999998 5899999999999875 56789999998877654444467999999998
Q ss_pred CCChH------HHHHhcCCC-CCcEEEeeecC--CCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEEeCCeEee
Q 009593 253 EISVP------SLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCCIGSSCLK 322 (531)
Q Consensus 253 ~~S~~------~~L~~~g~i-~~~FS~~L~~~--~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~Vgg~~~~ 322 (531)
..+.+ .+|+++|+| ++.||+||.+. ..|.|+||++|+.++ +.+.|+|.... .+|.|++++|.||++.+.
T Consensus 124 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-~~w~v~l~~i~vg~~~~~ 202 (320)
T cd05488 124 TISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK-AYWEVELEKIGLGDEELE 202 (320)
T ss_pred cccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC-cEEEEEeCeEEECCEEec
Confidence 77642 358899999 79999999874 579999999998775 47888887754 799999999999999887
Q ss_pred cCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCeEE
Q 009593 323 QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFV 402 (531)
Q Consensus 323 ~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~y~ 402 (531)
.....++|||||++++||++++++|.+++ +.... ...+|.++|.....+|.|+|+| +|+++.|++++|+
T Consensus 203 ~~~~~~ivDSGtt~~~lp~~~~~~l~~~~----~~~~~------~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~ 271 (320)
T cd05488 203 LENTGAAIDTGTSLIALPSDLAEMLNAEI----GAKKS------WNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYT 271 (320)
T ss_pred cCCCeEEEcCCcccccCCHHHHHHHHHHh----CCccc------cCCcEEeeccccccCCCEEEEE-CCEEEEECHHHhe
Confidence 66778999999999999999988776655 32221 1234788887777899999999 7899999999999
Q ss_pred EEeccccceEEEE-EEec-----CCCceeeCccceeceEEEEeCCCCEEEEee
Q 009593 403 IYGTQVVTGFCLA-IQPV-----DGDIGTIGQNFMTGYRVVFDRENLKLGWSH 449 (531)
Q Consensus 403 ~~~~~~~~~~Cl~-i~~~-----~~~~~ILG~~fl~~~yvvFD~e~~riGfa~ 449 (531)
++. ...|+. +... .++.||||++|||++|+|||++++|||||+
T Consensus 272 ~~~----~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 272 LEV----SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred ecC----CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 853 347974 4432 124799999999999999999999999996
No 10
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=6.9e-53 Score=431.47 Aligned_cols=308 Identities=24% Similarity=0.407 Sum_probs=254.6
Q ss_pred ecCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCC
Q 009593 94 SLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLC 172 (531)
Q Consensus 94 ~l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C 172 (531)
++.|+.+.+||++|.||||+|++.|++||||+++||+|. |..|. ..|. .++.|+|++|+|++..
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~c~-------~~~~y~~~~Sst~~~~------- 67 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTN-IACL-------LHNKYDSTKSSTYKKN------- 67 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCC-cccc-------CCCeECCcCCCCeEEC-------
Confidence 577999999999999999999999999999999999996 65432 1221 3468999999999974
Q ss_pred CCCCCCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCC
Q 009593 173 DLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLG 252 (531)
Q Consensus 173 ~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~ 252 (531)
.|.|.+.|++| ++.|.+++|+|+|++. ...++.|||+.++.+..+.....|||||||+.
T Consensus 68 -----------~~~~~i~Y~~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 126 (329)
T cd05485 68 -----------GTEFAIQYGSG--SLSGFLSTDTVSVGGV--------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYS 126 (329)
T ss_pred -----------CeEEEEEECCc--eEEEEEecCcEEECCE--------EECCEEEEEEEecCCccccccccceEEEcCCc
Confidence 48999999998 5899999999999875 56789999998877644444467999999998
Q ss_pred CCCh------HHHHHhcCCC-CCcEEEeeecC----CCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEEeCCeE
Q 009593 253 EISV------PSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCCIGSSC 320 (531)
Q Consensus 253 ~~S~------~~~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~Vgg~~ 320 (531)
.++. ..+|++||+| ++.||+||.+. ..|+|+||++|+.++ +.+.|+|+... .+|.|++++|.|+++.
T Consensus 127 ~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-~~~~v~~~~i~v~~~~ 205 (329)
T cd05485 127 SISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK-GYWQFKMDSVSVGEGE 205 (329)
T ss_pred cccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc-eEEEEEeeEEEECCee
Confidence 7764 4679999999 79999999864 369999999998875 57788887654 8999999999999998
Q ss_pred eecCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCe
Q 009593 321 LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPV 400 (531)
Q Consensus 321 ~~~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~ 400 (531)
+......+||||||++++||+++|++|.+++.. .... ..||.++|....++|+|+|+| +++++.|++++
T Consensus 206 ~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~----~~~~------~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~ 274 (329)
T cd05485 206 FCSGGCQAIADTGTSLIAGPVDEIEKLNNAIGA----KPII------GGEYMVNCSAIPSLPDITFVL-GGKSFSLTGKD 274 (329)
T ss_pred ecCCCcEEEEccCCcceeCCHHHHHHHHHHhCC----cccc------CCcEEEeccccccCCcEEEEE-CCEEeEEChHH
Confidence 865667899999999999999998888766532 2211 124778888777899999999 88999999999
Q ss_pred EEEEeccccceEEE-EEEec-----CCCceeeCccceeceEEEEeCCCCEEEEee
Q 009593 401 FVIYGTQVVTGFCL-AIQPV-----DGDIGTIGQNFMTGYRVVFDRENLKLGWSH 449 (531)
Q Consensus 401 y~~~~~~~~~~~Cl-~i~~~-----~~~~~ILG~~fl~~~yvvFD~e~~riGfa~ 449 (531)
|+++.......+|+ +++.. .++.||||+.|||++|+|||++++|||||+
T Consensus 275 yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 275 YVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred eEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 99886543256897 56642 234799999999999999999999999985
No 11
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.1e-53 Score=429.34 Aligned_cols=297 Identities=23% Similarity=0.388 Sum_probs=244.1
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 009593 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPK 182 (531)
Q Consensus 103 y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~~ 182 (531)
||++|.||||+|+|.|+|||||+++||+|. .|....|. .++.|+|++|+|++..
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~--~C~~~~C~-------~~~~y~~~~SsT~~~~----------------- 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI--YCTSQACT-------KHNRFQPSESSTYVSN----------------- 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC--CCCCcccC-------ccceECCCCCcccccC-----------------
Confidence 789999999999999999999999999995 34333332 3478999999999874
Q ss_pred CCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCCh------
Q 009593 183 QPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISV------ 256 (531)
Q Consensus 183 ~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~~S~------ 256 (531)
+|.|++.|++| .+.|.+++|+|+|++. ...++.|||+..+.+..+.....|||||||++.++.
T Consensus 55 -~~~~~i~Yg~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~ 123 (316)
T cd05486 55 -GEAFSIQYGTG--SLTGIIGIDQVTVEGI--------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPV 123 (316)
T ss_pred -CcEEEEEeCCc--EEEEEeeecEEEECCE--------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCH
Confidence 48999999998 6899999999999875 667999999988776544445679999999987653
Q ss_pred HHHHHhcCCC-CCcEEEeeecC----CCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEEeCCeEee-cCcceEE
Q 009593 257 PSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAI 329 (531)
Q Consensus 257 ~~~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~Vgg~~~~-~~~~~ai 329 (531)
..+|++||+| +++||+||.++ ..|.|+||++|+.++ +.+.|+|+... .+|.|++++|.|||+.+. .....+|
T Consensus 124 ~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~-~~w~v~l~~i~v~g~~~~~~~~~~ai 202 (316)
T cd05486 124 FDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ-GYWQIQLDNIQVGGTVIFCSDGCQAI 202 (316)
T ss_pred HHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc-eEEEEEeeEEEEecceEecCCCCEEE
Confidence 5679999999 68999999864 369999999999874 47888887765 899999999999998764 3457899
Q ss_pred EecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCeEEEEecccc
Q 009593 330 VDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVV 409 (531)
Q Consensus 330 iDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~y~~~~~~~~ 409 (531)
|||||++++||++++++|.+++. .... . .+|.++|.....+|+|+|+| +|++++|++++|++......
T Consensus 203 iDTGTs~~~lP~~~~~~l~~~~~----~~~~-~------~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~ 270 (316)
T cd05486 203 VDTGTSLITGPSGDIKQLQNYIG----ATAT-D------GEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQSDG 270 (316)
T ss_pred ECCCcchhhcCHHHHHHHHHHhC----Cccc-C------CcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEecccCC
Confidence 99999999999999888766553 2211 1 23778887777899999999 78999999999998753222
Q ss_pred ceEEE-EEEec-----CCCceeeCccceeceEEEEeCCCCEEEEee
Q 009593 410 TGFCL-AIQPV-----DGDIGTIGQNFMTGYRVVFDRENLKLGWSH 449 (531)
Q Consensus 410 ~~~Cl-~i~~~-----~~~~~ILG~~fl~~~yvvFD~e~~riGfa~ 449 (531)
...|+ +++.. .++.||||+.|||++|+|||.+++|||||+
T Consensus 271 ~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 271 GGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 56896 56543 235799999999999999999999999996
No 12
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.1e-52 Score=424.84 Aligned_cols=286 Identities=27% Similarity=0.474 Sum_probs=235.9
Q ss_pred eEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 009593 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 181 (531)
Q Consensus 102 ~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 181 (531)
+||++|.||||||++.|++||||+++||+|. .|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~--~c--------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ--PC--------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC--CC---------------------------------------------
Confidence 5899999999999999999999999999882 22
Q ss_pred CCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCChHHHHH
Q 009593 182 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLA 261 (531)
Q Consensus 182 ~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~~S~~~~L~ 261 (531)
|.|.+.|++| +.++|.+++|+|+|++. ...+++.|||+..+++.+. ..|||||||+..+|++.||.
T Consensus 34 ---~~~~i~Yg~G-s~~~G~~~~D~v~ig~~-------~~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~ 99 (299)
T cd05472 34 ---CLYQVSYGDG-SYTTGDLATDTLTLGSS-------DVVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTA 99 (299)
T ss_pred ---CeeeeEeCCC-ceEEEEEEEEEEEeCCC-------CccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhh
Confidence 6899999997 66799999999999864 2457899999998876542 57999999999999999987
Q ss_pred hcCCCCCcEEEeeec---CCCCcEEECCCCCCCCeeeeeeecCC---CceeEEEEeeEEEeCCeEeec-----CcceEEE
Q 009593 262 KAGLIRNSFSMCFDK---DDSGRIFFGDQGPATQQSTSFLASNG---KYITYIIGVETCCIGSSCLKQ-----TSFKAIV 330 (531)
Q Consensus 262 ~~g~i~~~FS~~L~~---~~~G~l~fGg~d~~~~~~~~~v~~~~---~~~~y~V~l~~i~Vgg~~~~~-----~~~~aii 330 (531)
.+ .+++||+||.+ ...|+|+||++|+. .+.+.|+|+.. ...+|.|+|++|+||++.+.. ....+||
T Consensus 100 ~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iv 176 (299)
T cd05472 100 SS--YGGVFSYCLPDRSSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVII 176 (299)
T ss_pred Hh--hcCceEEEccCCCCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEE
Confidence 64 46899999986 35799999999997 44444544433 236999999999999998763 2457999
Q ss_pred ecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCeEEEEeccccc
Q 009593 331 DSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVT 410 (531)
Q Consensus 331 DSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~y~~~~~~~~~ 410 (531)
||||++++||+++|++|.+++.+++...........++.||..++.....+|+|+|+|.++.++.|++++|++....+ +
T Consensus 177 DSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~-~ 255 (299)
T cd05472 177 DSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDS-S 255 (299)
T ss_pred eCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCC-C
Confidence 999999999999999999999877643322222234457998888766789999999966899999999999843322 5
Q ss_pred eEEEEEEecC--CCceeeCccceeceEEEEeCCCCEEEEeeCCC
Q 009593 411 GFCLAIQPVD--GDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 452 (531)
Q Consensus 411 ~~Cl~i~~~~--~~~~ILG~~fl~~~yvvFD~e~~riGfa~~~C 452 (531)
.+|+++...+ .+.||||+.|||++|+|||++++|||||+.+|
T Consensus 256 ~~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 256 QVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CEEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 7899988763 35799999999999999999999999999999
No 13
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.8e-52 Score=426.74 Aligned_cols=298 Identities=22% Similarity=0.417 Sum_probs=247.3
Q ss_pred CceEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 009593 100 GWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQ 179 (531)
Q Consensus 100 ~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 179 (531)
+..|+++|.||||||++.|++||||+++||+|. .|..+.|. .++.|+|++|+||+.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~--~C~~~~C~-------~~~~f~~~~SsT~~~--------------- 56 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV--LCQSQACT-------NHTKFNPSQSSTYST--------------- 56 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC--CCCCcccc-------ccCCCCcccCCCceE---------------
Confidence 457999999999999999999999999999995 34333332 347999999999987
Q ss_pred CCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCC------
Q 009593 180 NPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE------ 253 (531)
Q Consensus 180 ~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~------ 253 (531)
..|.|++.|++| ++.|.+++|+|+|++. ...++.|||++...+..+.....|||||||++.
T Consensus 57 ---~~~~~~~~Yg~G--s~~G~~~~D~i~~g~~--------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 123 (318)
T cd05477 57 ---NGETFSLQYGSG--SLTGIFGYDTVTVQGI--------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGA 123 (318)
T ss_pred ---CCcEEEEEECCc--EEEEEEEeeEEEECCE--------EEcCEEEEEEEecccccccccceeeEeecCcccccccCC
Confidence 359999999998 5799999999999875 667999999998766433334579999999864
Q ss_pred CChHHHHHhcCCC-CCcEEEeeecC---CCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEEeCCeEee--cCcc
Q 009593 254 ISVPSLLAKAGLI-RNSFSMCFDKD---DSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCCIGSSCLK--QTSF 326 (531)
Q Consensus 254 ~S~~~~L~~~g~i-~~~FS~~L~~~---~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~Vgg~~~~--~~~~ 326 (531)
.+++.+|+++|+| ++.||+||.++ ..|.|+||++|+.++ +.+.|+++... .+|.|++++|.||++.+. ....
T Consensus 124 ~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~-~~w~v~l~~i~v~g~~~~~~~~~~ 202 (318)
T cd05477 124 TTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE-TYWQIGIQGFQINGQATGWCSQGC 202 (318)
T ss_pred CCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc-eEEEEEeeEEEECCEEecccCCCc
Confidence 3567789999999 79999999875 469999999998875 46888888765 899999999999998764 3456
Q ss_pred eEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCeEEEEec
Q 009593 327 KAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGT 406 (531)
Q Consensus 327 ~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~y~~~~~ 406 (531)
.+||||||++++||+++|++|++++..+.. . ..+|.++|.....+|+|+|+| +|+++.|++++|+...
T Consensus 203 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~----~------~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~- 270 (318)
T cd05477 203 QAIVDTGTSLLTAPQQVMSTLMQSIGAQQD----Q------YGQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN- 270 (318)
T ss_pred eeeECCCCccEECCHHHHHHHHHHhCCccc----c------CCCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC-
Confidence 799999999999999999998887754321 1 124888898777899999999 7899999999999864
Q ss_pred cccceEEE-EEEec------CCCceeeCccceeceEEEEeCCCCEEEEeeC
Q 009593 407 QVVTGFCL-AIQPV------DGDIGTIGQNFMTGYRVVFDRENLKLGWSHS 450 (531)
Q Consensus 407 ~~~~~~Cl-~i~~~------~~~~~ILG~~fl~~~yvvFD~e~~riGfa~~ 450 (531)
..+|+ ++++. +.+.||||..|||++|+|||++++|||||++
T Consensus 271 ---~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 ---NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ---CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 34795 77642 1246999999999999999999999999985
No 14
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.7e-51 Score=421.94 Aligned_cols=313 Identities=23% Similarity=0.324 Sum_probs=246.4
Q ss_pred ecCCCeE-EEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCC--C---------
Q 009593 109 IGTPNVS-FLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLG--T--------- 176 (531)
Q Consensus 109 IGTP~q~-~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~--~--------- 176 (531)
+|||-.+ |.|++||||+++||+|. |.+|+||+.++|+++.|... .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-----------------------~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~ 58 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-----------------------AGHSSTYQTVPCSSSVCSLANRYHCPGTCGGA 58 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-----------------------CCCcCCCCccCcCChhhccccccCCCccccCC
Confidence 6888878 99999999999999992 35688999999999999853 1
Q ss_pred ---CCCCCCCCCceEEe-cCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCC
Q 009593 177 ---SCQNPKQPCPYTMD-YYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLG 252 (531)
Q Consensus 177 ---~C~~~~~~c~~~i~-Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~ 252 (531)
.|.+ +.|.|... |++| +..+|++++|+|+|+..++......+++++.|||+.++....+. ..+|||||||++
T Consensus 59 ~~~~c~~--~~C~y~~~~y~~g-s~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~-~~~dGIlGLg~~ 134 (362)
T cd05489 59 PGPGCGN--NTCTAHPYNPVTG-ECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLP-PGAQGVAGLGRS 134 (362)
T ss_pred CCCCCCC--CcCeeEccccccC-cEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCc-cccccccccCCC
Confidence 3433 35888765 7786 78999999999999865332100125679999999886432221 247999999999
Q ss_pred CCChHHHHHhcCCCCCcEEEeeecC--CCCcEEECCCCCCCC----------eeeeeeecCCCceeEEEEeeEEEeCCeE
Q 009593 253 EISVPSLLAKAGLIRNSFSMCFDKD--DSGRIFFGDQGPATQ----------QSTSFLASNGKYITYIIGVETCCIGSSC 320 (531)
Q Consensus 253 ~~S~~~~L~~~g~i~~~FS~~L~~~--~~G~l~fGg~d~~~~----------~~~~~v~~~~~~~~y~V~l~~i~Vgg~~ 320 (531)
++|++.||..++.++++|||||.++ ..|.|+||+.+...+ .++|++..+....+|.|+|++|+||++.
T Consensus 135 ~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~ 214 (362)
T cd05489 135 PLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHA 214 (362)
T ss_pred ccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEE
Confidence 9999999987766679999999864 479999999886432 3555554432347999999999999998
Q ss_pred eec----------CcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccC-CCCceeeeecCC----CCCCCCCeEE
Q 009593 321 LKQ----------TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFE-GYPWKCCYKSSS----QRLPKLPSVK 385 (531)
Q Consensus 321 ~~~----------~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~-~~~~~~Cy~~~~----~~~~~~P~it 385 (531)
+.. ...++||||||++|+||+++|++|.++|.+++........ ...++.||.... .....+|+|+
T Consensus 215 l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it 294 (362)
T cd05489 215 VPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAID 294 (362)
T ss_pred CCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEE
Confidence 752 1347999999999999999999999999988764332212 222478998543 2246899999
Q ss_pred EEecC-CcEEEEcCCeEEEEeccccceEEEEEEecC---CCceeeCccceeceEEEEeCCCCEEEEeeC
Q 009593 386 LMFPQ-NNSFVVNNPVFVIYGTQVVTGFCLAIQPVD---GDIGTIGQNFMTGYRVVFDRENLKLGWSHS 450 (531)
Q Consensus 386 f~f~g-g~~~~i~~~~y~~~~~~~~~~~Cl~i~~~~---~~~~ILG~~fl~~~yvvFD~e~~riGfa~~ 450 (531)
|+|+| |+++.|++++|+++..+ +.+|++|...+ ++.||||+.|||++|+|||++++||||++.
T Consensus 295 ~~f~g~g~~~~l~~~ny~~~~~~--~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 295 LVLDGGGVNWTIFGANSMVQVKG--GVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEeCCCeEEEEcCCceEEEcCC--CcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99976 79999999999998754 67899998765 347999999999999999999999999974
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=9.8e-51 Score=426.91 Aligned_cols=311 Identities=20% Similarity=0.346 Sum_probs=248.4
Q ss_pred CCCceeecCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccC
Q 009593 88 QGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSC 167 (531)
Q Consensus 88 ~~~~~~~l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C 167 (531)
..+..+++.|+.+.+||++|.||||+|+|.|++||||+++||+|. .|....|. .++.|||++|+|++..
T Consensus 125 ~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~--~C~~~~C~-------~~~~yd~s~SsT~~~~-- 193 (453)
T PTZ00147 125 SEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI--KCTTEGCE-------TKNLYDSSKSKTYEKD-- 193 (453)
T ss_pred CCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec--CCCccccc-------CCCccCCccCcceEEC--
Confidence 345678899999999999999999999999999999999999995 34332332 3478999999999874
Q ss_pred CCCCCCCCCCCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCC--CCCCCCCCe
Q 009593 168 SHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGG--YLDGVAPDG 245 (531)
Q Consensus 168 ~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~--~~~~~~~dG 245 (531)
++.|++.|++| ++.|.+++|+|+|++. ..+ ..|+|+.+..+. .......||
T Consensus 194 ----------------~~~f~i~Yg~G--svsG~~~~DtVtiG~~--------~v~-~qF~~~~~~~~f~~~~~~~~~DG 246 (453)
T PTZ00147 194 ----------------GTKVEMNYVSG--TVSGFFSKDLVTIGNL--------SVP-YKFIEVTDTNGFEPFYTESDFDG 246 (453)
T ss_pred ----------------CCEEEEEeCCC--CEEEEEEEEEEEECCE--------EEE-EEEEEEEeccCcccccccccccc
Confidence 48999999998 5899999999999875 444 579998876552 223346799
Q ss_pred eeecCCCCCCh------HHHHHhcCCC-CCcEEEeeecC--CCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEE
Q 009593 246 LIGLGLGEISV------PSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCC 315 (531)
Q Consensus 246 IlGLG~~~~S~------~~~L~~~g~i-~~~FS~~L~~~--~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~ 315 (531)
|||||++.++. +.+|++||+| +++||+||.+. ..|.|+|||+|+.++ +.+.|+++... .+|.|.++ +.
T Consensus 247 ILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~-~~W~V~l~-~~ 324 (453)
T PTZ00147 247 IFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD-LYWQVDLD-VH 324 (453)
T ss_pred eecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC-ceEEEEEE-EE
Confidence 99999987654 5579999999 78999999863 479999999999875 58888888654 79999998 57
Q ss_pred eCCeEeecCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEE
Q 009593 316 IGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFV 395 (531)
Q Consensus 316 Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~ 395 (531)
+++... ....+||||||+++++|+++++++.+++.. ....... .|..+|.. ..+|+|+|+| +|..++
T Consensus 325 vg~~~~--~~~~aIiDSGTsli~lP~~~~~ai~~~l~~----~~~~~~~-----~y~~~C~~-~~lP~~~f~f-~g~~~~ 391 (453)
T PTZ00147 325 FGNVSS--EKANVIVDSGTSVITVPTEFLNKFVESLDV----FKVPFLP-----LYVTTCNN-TKLPTLEFRS-PNKVYT 391 (453)
T ss_pred ECCEec--CceeEEECCCCchhcCCHHHHHHHHHHhCC----eecCCCC-----eEEEeCCC-CCCCeEEEEE-CCEEEE
Confidence 877543 467899999999999999998888776632 1111111 15556654 4789999999 788999
Q ss_pred EcCCeEEEEeccccceEEE-EEEecC--CCceeeCccceeceEEEEeCCCCEEEEeeCC
Q 009593 396 VNNPVFVIYGTQVVTGFCL-AIQPVD--GDIGTIGQNFMTGYRVVFDRENLKLGWSHSN 451 (531)
Q Consensus 396 i~~~~y~~~~~~~~~~~Cl-~i~~~~--~~~~ILG~~fl~~~yvvFD~e~~riGfa~~~ 451 (531)
|+|++|+..........|+ ++++.+ .+.||||+.|||++|+|||++++|||||+++
T Consensus 392 L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 392 LEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9999999764332246796 677643 3579999999999999999999999999985
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.7e-50 Score=419.60 Aligned_cols=318 Identities=20% Similarity=0.239 Sum_probs=241.4
Q ss_pred ceEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 009593 101 WLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 180 (531)
Q Consensus 101 ~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~ 180 (531)
..||++|.||||+|+|.|++||||+++||+|. .|.. .++.|+|++|+|++..
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~~~~-----------~~~~f~~~~SsT~~~~--------------- 53 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAA--PHPF-----------IHTYFHRELSSTYRDL--------------- 53 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcC--CCcc-----------ccccCCchhCcCcccC---------------
Confidence 46999999999999999999999999999995 2311 1268999999999985
Q ss_pred CCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCC-----
Q 009593 181 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS----- 255 (531)
Q Consensus 181 ~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~~S----- 255 (531)
+|.|++.|++| ++.|.+++|+|+|++..+ ....+.|++.....+.+......|||||||++.++
T Consensus 54 ---~~~~~i~Yg~G--s~~G~~~~D~v~ig~~~~------~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~ 122 (364)
T cd05473 54 ---GKGVTVPYTQG--SWEGELGTDLVSIPKGPN------VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSS 122 (364)
T ss_pred ---CceEEEEECcc--eEEEEEEEEEEEECCCCc------cceEEeeEEEeccccceecccccceeeeecccccccCCCC
Confidence 48999999998 679999999999985311 22234466766555544444467999999998764
Q ss_pred ---hHHHHHhcCCCCCcEEEeeec-----------CCCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEEeCCeE
Q 009593 256 ---VPSLLAKAGLIRNSFSMCFDK-----------DDSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCCIGSSC 320 (531)
Q Consensus 256 ---~~~~L~~~g~i~~~FS~~L~~-----------~~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~Vgg~~ 320 (531)
+..+|++|+.++++||++|+. ...|.|+||++|+.++ +.+.|+|+... .+|.|++++|.||++.
T Consensus 123 ~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~-~~~~v~l~~i~vg~~~ 201 (364)
T cd05473 123 VEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE-WYYEVIILKLEVGGQS 201 (364)
T ss_pred CCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc-eeEEEEEEEEEECCEe
Confidence 345688888888899998852 1369999999998875 36777777654 8999999999999998
Q ss_pred eecC-----cceEEEecCccceeccHHHHHHHHHHHHhhccCcccccC--CCCceeeeecCCCCCCCCCeEEEEecCC--
Q 009593 321 LKQT-----SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFE--GYPWKCCYKSSSQRLPKLPSVKLMFPQN-- 391 (531)
Q Consensus 321 ~~~~-----~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~--~~~~~~Cy~~~~~~~~~~P~itf~f~gg-- 391 (531)
+... ...+||||||++++||+++|++|.+++..+......... ......|+.........+|+|+|+|+++
T Consensus 202 ~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~ 281 (364)
T cd05473 202 LNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENS 281 (364)
T ss_pred cccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCC
Confidence 7632 136999999999999999999999999877543211111 0112356654433334699999999652
Q ss_pred ---cEEEEcCCeEEEEecc-ccceEEEEEEec-CCCceeeCccceeceEEEEeCCCCEEEEeeCCCCCCCCC
Q 009593 392 ---NSFVVNNPVFVIYGTQ-VVTGFCLAIQPV-DGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNCQDLNDG 458 (531)
Q Consensus 392 ---~~~~i~~~~y~~~~~~-~~~~~Cl~i~~~-~~~~~ILG~~fl~~~yvvFD~e~~riGfa~~~C~~~~~~ 458 (531)
.++.|+|++|+..... +....|+++... ..+.||||+.|||++|+|||++++|||||+.+|...+..
T Consensus 282 ~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~~ 353 (364)
T cd05473 282 SQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDGF 353 (364)
T ss_pred CceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccccCc
Confidence 3678999999876432 124679754322 235799999999999999999999999999999876544
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.8e-49 Score=416.59 Aligned_cols=312 Identities=19% Similarity=0.343 Sum_probs=245.5
Q ss_pred CCCCceeecCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCcccc
Q 009593 87 SQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166 (531)
Q Consensus 87 ~~~~~~~~l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~ 166 (531)
...+..+++.|+.+.+||++|.||||+|+|.|++||||+++||+|. .|....|. .++.|||++|+|++..
T Consensus 123 ~~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~--~C~~~~C~-------~~~~yd~s~SsT~~~~- 192 (450)
T PTZ00013 123 GSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK--KCDSIGCS-------IKNLYDSSKSKSYEKD- 192 (450)
T ss_pred ccCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc--cCCccccc-------cCCCccCccCcccccC-
Confidence 3345667888999999999999999999999999999999999995 33322332 3378999999999874
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccC--CCCCCCCCC
Q 009593 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSG--GYLDGVAPD 244 (531)
Q Consensus 167 C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g--~~~~~~~~d 244 (531)
+|.|.+.|++| ++.|.+++|+|+|++. ... ..|+++....+ ..+....+|
T Consensus 193 -----------------~~~~~i~YG~G--sv~G~~~~Dtv~iG~~--------~~~-~~f~~~~~~~~~~~~~~~~~~d 244 (450)
T PTZ00013 193 -----------------GTKVDITYGSG--TVKGFFSKDLVTLGHL--------SMP-YKFIEVTDTDDLEPIYSSSEFD 244 (450)
T ss_pred -----------------CcEEEEEECCc--eEEEEEEEEEEEECCE--------EEc-cEEEEEEeccccccceeccccc
Confidence 48999999998 5899999999999875 333 57888876542 223334679
Q ss_pred eeeecCCCCCC------hHHHHHhcCCC-CCcEEEeeecC--CCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEE
Q 009593 245 GLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETC 314 (531)
Q Consensus 245 GIlGLG~~~~S------~~~~L~~~g~i-~~~FS~~L~~~--~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i 314 (531)
||||||+..++ ++.+|++||+| ++.||+||.+. ..|.|+|||+|+.++ +.+.|+|+... .+|.|+++ +
T Consensus 245 GIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~-~yW~I~l~-v 322 (450)
T PTZ00013 245 GILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD-LYWQIDLD-V 322 (450)
T ss_pred ceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC-ceEEEEEE-E
Confidence 99999998765 35679999999 68999999864 479999999999885 58888888764 89999998 6
Q ss_pred EeCCeEeecCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEE
Q 009593 315 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSF 394 (531)
Q Consensus 315 ~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~ 394 (531)
.+|.... ....+||||||+++++|+++++++.+++. ........ .|..+|.. ..+|+|+|+| +|.++
T Consensus 323 ~~G~~~~--~~~~aIlDSGTSli~lP~~~~~~i~~~l~----~~~~~~~~-----~y~~~C~~-~~lP~i~F~~-~g~~~ 389 (450)
T PTZ00013 323 HFGKQTM--QKANVIVDSGTTTITAPSEFLNKFFANLN----VIKVPFLP-----FYVTTCDN-KEMPTLEFKS-ANNTY 389 (450)
T ss_pred EECceec--cccceEECCCCccccCCHHHHHHHHHHhC----CeecCCCC-----eEEeecCC-CCCCeEEEEE-CCEEE
Confidence 7765543 35679999999999999999777766553 22211111 25566754 4789999999 78999
Q ss_pred EEcCCeEEEEeccccceEEE-EEEecC--CCceeeCccceeceEEEEeCCCCEEEEeeCC
Q 009593 395 VVNNPVFVIYGTQVVTGFCL-AIQPVD--GDIGTIGQNFMTGYRVVFDRENLKLGWSHSN 451 (531)
Q Consensus 395 ~i~~~~y~~~~~~~~~~~Cl-~i~~~~--~~~~ILG~~fl~~~yvvFD~e~~riGfa~~~ 451 (531)
+|+|++|+.......+..|+ ++.+.+ ++.||||+.|||++|+|||++++|||||+++
T Consensus 390 ~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 390 TLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99999998753221245895 666543 3579999999999999999999999999874
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.6e-49 Score=396.23 Aligned_cols=260 Identities=31% Similarity=0.642 Sum_probs=217.0
Q ss_pred eEEEEEEecCCCeEEEEEEEcCCCceEEecC--CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 009593 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCD--CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQ 179 (531)
Q Consensus 102 ~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~--C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 179 (531)
+||++|.||||+|++.|++||||+++||+|. |..|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------- 38 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------- 38 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------------
Confidence 6899999999999999999999999999983 4333
Q ss_pred CCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCC-CCCCCCeeeecCCCCCChHH
Q 009593 180 NPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYL-DGVAPDGLIGLGLGEISVPS 258 (531)
Q Consensus 180 ~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~-~~~~~dGIlGLG~~~~S~~~ 258 (531)
.|.|++.|+|+ +.++|.+++|+|+|+..++. ....++.|||+..+.+.+. .....|||||||+...++++
T Consensus 39 ----~c~~~i~Ygd~-~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADG-GSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCC-CceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHH
Confidence 28999999986 68999999999999754322 2456899999988776543 33467999999999999999
Q ss_pred HHHhcCCCCCcEEEeeecCCCCcEEECCCCCCCCeeeeeeecCCC--ceeEEEEeeEEEeCCeEeecCcceEEEecCccc
Q 009593 259 LLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLASNGK--YITYIIGVETCCIGSSCLKQTSFKAIVDSGSSF 336 (531)
Q Consensus 259 ~L~~~g~i~~~FS~~L~~~~~G~l~fGg~d~~~~~~~~~v~~~~~--~~~y~V~l~~i~Vgg~~~~~~~~~aiiDSGTs~ 336 (531)
||+++++|+++||+||.++..|.|+||+... ..+.+.|+|+..+ ..+|.|++++|+||++.+......+||||||++
T Consensus 110 ql~~~~~i~~~Fs~~l~~~~~g~l~~G~~~~-~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~ 188 (273)
T cd05475 110 QLASQGIIKNVIGHCLSSNGGGFLFFGDDLV-PSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSY 188 (273)
T ss_pred HHHhcCCcCceEEEEccCCCCeEEEECCCCC-CCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCce
Confidence 9999999999999999987679999995432 2344556555443 379999999999999976656678999999999
Q ss_pred eeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCC---cEEEEcCCeEEEEeccccceEE
Q 009593 337 TFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQN---NSFVVNNPVFVIYGTQVVTGFC 413 (531)
Q Consensus 337 t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg---~~~~i~~~~y~~~~~~~~~~~C 413 (531)
++||+++| +|+|+|+|+++ ++++|++++|++.... +..|
T Consensus 189 t~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~C 230 (273)
T cd05475 189 TYFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVC 230 (273)
T ss_pred EEcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEE
Confidence 99999986 58899999544 7999999999987544 5689
Q ss_pred EEEEecC----CCceeeCccceeceEEEEeCCCCEEEEeeCCC
Q 009593 414 LAIQPVD----GDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 452 (531)
Q Consensus 414 l~i~~~~----~~~~ILG~~fl~~~yvvFD~e~~riGfa~~~C 452 (531)
+++.... .+.||||+.|||++|+|||++++||||++++|
T Consensus 231 l~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 231 LGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 9887653 24799999999999999999999999999999
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.8e-48 Score=388.46 Aligned_cols=266 Identities=23% Similarity=0.323 Sum_probs=220.3
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 009593 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 181 (531)
Q Consensus 103 y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 181 (531)
||++|.||||+|++.|++||||+++||+|. |..|... .++.|+|++|+|++..+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~----------~~~~y~~~~Sst~~~~~--------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQG----------GHKLYDPSKSSTAKLLP--------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhc----------cCCcCCCccCccceecC---------------
Confidence 789999999999999999999999999997 7776432 23679999999998743
Q ss_pred CCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCCh-----
Q 009593 182 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISV----- 256 (531)
Q Consensus 182 ~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~~S~----- 256 (531)
.|.|.+.|++| +.+.|.+++|+|+|++. ...++.|||++...+.++....+|||||||+...+.
T Consensus 56 --~~~~~i~Y~~G-~~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 56 --GATWSISYGDG-SSASGIVYTDTVSIGGV--------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred --CcEEEEEeCCC-CeEEEEEEEEEEEECCE--------EECCeEEEEEeecCccccccccccceeeeccccccccccCC
Confidence 48999999997 56899999999999875 667899999998877555555789999999986542
Q ss_pred ----HHHHHhcCCCCCcEEEeeecCCCCcEEECCCCCCCC-eeeeeeecCCCceeEEEEeeEEEeCCeEe-ecCcceEEE
Q 009593 257 ----PSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQ-QSTSFLASNGKYITYIIGVETCCIGSSCL-KQTSFKAIV 330 (531)
Q Consensus 257 ----~~~L~~~g~i~~~FS~~L~~~~~G~l~fGg~d~~~~-~~~~~v~~~~~~~~y~V~l~~i~Vgg~~~-~~~~~~aii 330 (531)
..+|.+++. ++.||+||.+...|+|+|||+|+.++ +++.|+|+.....+|.|++++|.||++.. ......++|
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ii 203 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIA 203 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEe
Confidence 445777754 79999999976789999999998874 47888887664489999999999999833 345778999
Q ss_pred ecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCeEEEEeccccc
Q 009593 331 DSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVT 410 (531)
Q Consensus 331 DSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~y~~~~~~~~~ 410 (531)
||||+++++|+++++++.+++. +..... ...+|.++|+.. +|+|+|+|
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l~---g~~~~~-----~~~~~~~~C~~~--~P~i~f~~---------------------- 251 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQVP---GAYYDS-----EYGGWVFPCDTT--LPDLSFAV---------------------- 251 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhCc---CCcccC-----CCCEEEEECCCC--CCCEEEEE----------------------
Confidence 9999999999999777766552 221111 123588999753 89999998
Q ss_pred eEEEEEEecCCCceeeCccceeceEEEEeCCCCEEEEee
Q 009593 411 GFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSH 449 (531)
Q Consensus 411 ~~Cl~i~~~~~~~~ILG~~fl~~~yvvFD~e~~riGfa~ 449 (531)
.||||++|||++|+|||++|+|||||+
T Consensus 252 ------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=6.3e-48 Score=383.22 Aligned_cols=247 Identities=28% Similarity=0.532 Sum_probs=212.6
Q ss_pred eEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 009593 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 181 (531)
Q Consensus 102 ~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 181 (531)
+|+++|.||||+|++.|++||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 489999999999999999999999999986
Q ss_pred CCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCChHHHHH
Q 009593 182 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLA 261 (531)
Q Consensus 182 ~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~~S~~~~L~ 261 (531)
|.|.+.|+|| +.++|.+++|+|+|++.. ...+++.|||++.+.+ + .....+||||||+...|++.||.
T Consensus 31 ---~~~~~~Y~dg-~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~-~~~~~~GIlGLg~~~~s~~~ql~ 98 (265)
T cd05476 31 ---CSYEYSYGDG-SSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G-SFGGADGILGLGRGPLSLVSQLG 98 (265)
T ss_pred ---CceEeEeCCC-ceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C-ccCCCCEEEECCCCcccHHHHhh
Confidence 6789999986 789999999999998751 1457899999999876 2 33467999999999999999998
Q ss_pred hcCCCCCcEEEeeec----CCCCcEEECCCCCCCCeeeeeeecCC---CceeEEEEeeEEEeCCeEee----------cC
Q 009593 262 KAGLIRNSFSMCFDK----DDSGRIFFGDQGPATQQSTSFLASNG---KYITYIIGVETCCIGSSCLK----------QT 324 (531)
Q Consensus 262 ~~g~i~~~FS~~L~~----~~~G~l~fGg~d~~~~~~~~~v~~~~---~~~~y~V~l~~i~Vgg~~~~----------~~ 324 (531)
.++ ++||+||.+ ...|+|+||++|+...+.+.|+|+.. ...+|.|++++|+|+++.+. ..
T Consensus 99 ~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~ 175 (265)
T cd05476 99 STG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDG 175 (265)
T ss_pred ccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCC
Confidence 877 899999986 35799999999997433455555433 24799999999999999764 24
Q ss_pred cceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCeEEEE
Q 009593 325 SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIY 404 (531)
Q Consensus 325 ~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~y~~~ 404 (531)
...+||||||++++||+++| |.|+|+|.++.++.+++++|+..
T Consensus 176 ~~~ai~DTGTs~~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~ 218 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVD 218 (265)
T ss_pred CCcEEEeCCCcceEcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEE
Confidence 56799999999999999986 88999996589999999999986
Q ss_pred eccccceEEEEEEec-CCCceeeCccceeceEEEEeCCCCEEEEeeCCC
Q 009593 405 GTQVVTGFCLAIQPV-DGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 452 (531)
Q Consensus 405 ~~~~~~~~Cl~i~~~-~~~~~ILG~~fl~~~yvvFD~e~~riGfa~~~C 452 (531)
... +.+|+++... ..+.||||++|||++|++||++++|||||+++|
T Consensus 219 ~~~--~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 219 VGE--GVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCC--CCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 543 6799999877 457899999999999999999999999999999
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.7e-47 Score=388.10 Aligned_cols=299 Identities=27% Similarity=0.514 Sum_probs=248.7
Q ss_pred eEEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 009593 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 180 (531)
Q Consensus 102 ~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~ 180 (531)
+|+++|.||||+|++.|++||||+++||++. |..| ..|. ....|++++|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~--~~~~-------~~~~y~~~~S~t~~~~~-------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC--SSCA-------SSGFYNPSKSSTFSNQG-------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH--THHC-------TSC-BBGGGSTTEEEEE--------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc--cccc-------cccccccccccccccce--------------
Confidence 5999999999999999999999999999986 6665 1221 34799999999999854
Q ss_pred CCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCC-------
Q 009593 181 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE------- 253 (531)
Q Consensus 181 ~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~------- 253 (531)
+.+.+.|++| .++|.+++|+|+|++. ...++.||++....+..+.....|||||||+..
T Consensus 58 ----~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 58 ----KPFSISYGDG--SVSGNLVSDTVSIGGL--------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp ----EEEEEEETTE--EEEEEEEEEEEEETTE--------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS
T ss_pred ----eeeeeeccCc--ccccccccceEeeeec--------cccccceeccccccccccccccccccccccCCcccccccC
Confidence 7899999998 4999999999999875 667899999999766433334679999999754
Q ss_pred CChHHHHHhcCCC-CCcEEEeeecCC--CCcEEECCCCCCCCe-eeeeeecCCCceeEEEEeeEEEeCCe-EeecCcceE
Q 009593 254 ISVPSLLAKAGLI-RNSFSMCFDKDD--SGRIFFGDQGPATQQ-STSFLASNGKYITYIIGVETCCIGSS-CLKQTSFKA 328 (531)
Q Consensus 254 ~S~~~~L~~~g~i-~~~FS~~L~~~~--~G~l~fGg~d~~~~~-~~~~v~~~~~~~~y~V~l~~i~Vgg~-~~~~~~~~a 328 (531)
.++..+|+++|+| +++||++|++.. .|.|+||++|+.++. .+.|++.... .+|.|.+++|.++++ ........+
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~-~~w~v~~~~i~i~~~~~~~~~~~~~ 202 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS-GYWSVPLDSISIGGESVFSSSGQQA 202 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST-TTTEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcccc-cccccccccccccccccccccceee
Confidence 3567789999999 799999999864 699999999998854 7888888854 899999999999999 444456789
Q ss_pred EEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCeEEEEeccc
Q 009593 329 IVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQV 408 (531)
Q Consensus 329 iiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~y~~~~~~~ 408 (531)
+||||+++++||++++++|++++...... .+|.++|.....+|.|+|+| ++.++.|++++|+.+....
T Consensus 203 ~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~ 270 (317)
T PF00026_consen 203 ILDTGTSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDG 270 (317)
T ss_dssp EEETTBSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESST
T ss_pred ecccccccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEee-CCEEEEecchHhccccccc
Confidence 99999999999999988887777544333 34889998777899999999 7899999999999988764
Q ss_pred cceEEE-EEEe----cCCCceeeCccceeceEEEEeCCCCEEEEeeC
Q 009593 409 VTGFCL-AIQP----VDGDIGTIGQNFMTGYRVVFDRENLKLGWSHS 450 (531)
Q Consensus 409 ~~~~Cl-~i~~----~~~~~~ILG~~fl~~~yvvFD~e~~riGfa~~ 450 (531)
....|+ +|.. ...+.+|||.+|||++|+|||+|++|||||++
T Consensus 271 ~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 271 NGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 344894 5665 23468999999999999999999999999985
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.1e-45 Score=372.89 Aligned_cols=267 Identities=24% Similarity=0.415 Sum_probs=223.1
Q ss_pred eEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 009593 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 181 (531)
Q Consensus 102 ~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 181 (531)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 68999999999999999999999999994
Q ss_pred CCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCCC-------
Q 009593 182 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEI------- 254 (531)
Q Consensus 182 ~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~~------- 254 (531)
.|++.|++| +.+.|.+++|+|+|++. ...++.|||+++.. ..+||||||+...
T Consensus 31 ----~~~~~Y~~g-~~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~ 90 (295)
T cd05474 31 ----DFSISYGDG-TSASGTWGTDTVSIGGA--------TVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTG 90 (295)
T ss_pred ----eeEEEeccC-CcEEEEEEEEEEEECCe--------EecceEEEEEecCC-------CCcceeeECCCCCcccccCC
Confidence 467889986 68999999999999875 55689999999842 4589999999886
Q ss_pred ----ChHHHHHhcCCC-CCcEEEeeecC--CCCcEEECCCCCCCC-eeeeeeecCCC-----ceeEEEEeeEEEeCCeEe
Q 009593 255 ----SVPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPATQ-QSTSFLASNGK-----YITYIIGVETCCIGSSCL 321 (531)
Q Consensus 255 ----S~~~~L~~~g~i-~~~FS~~L~~~--~~G~l~fGg~d~~~~-~~~~~v~~~~~-----~~~y~V~l~~i~Vgg~~~ 321 (531)
+++.+|+++|+| ++.||+||.+. ..|.|+||++|..++ +.+.|+|+... ..+|.|++++|.|+++.+
T Consensus 91 ~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~ 170 (295)
T cd05474 91 YTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSG 170 (295)
T ss_pred CcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCC
Confidence 678899999999 79999999974 579999999998774 45666666543 278999999999999875
Q ss_pred e----cCcceEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEc
Q 009593 322 K----QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVN 397 (531)
Q Consensus 322 ~----~~~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~ 397 (531)
. .....++|||||++++||+++|++|.+++....... ..+|..+|..... |+|+|+| +|.++.|+
T Consensus 171 ~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~---------~~~~~~~C~~~~~-p~i~f~f-~g~~~~i~ 239 (295)
T cd05474 171 NTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD---------EGLYVVDCDAKDD-GSLTFNF-GGATISVP 239 (295)
T ss_pred cccccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC---------CcEEEEeCCCCCC-CEEEEEE-CCeEEEEE
Confidence 3 345689999999999999999999988886543221 1236677765555 9999999 78999999
Q ss_pred CCeEEEEecc--ccceEE-EEEEecCCCceeeCccceeceEEEEeCCCCEEEEeeC
Q 009593 398 NPVFVIYGTQ--VVTGFC-LAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHS 450 (531)
Q Consensus 398 ~~~y~~~~~~--~~~~~C-l~i~~~~~~~~ILG~~fl~~~yvvFD~e~~riGfa~~ 450 (531)
+++|+++... ....+| +++++.+.+.||||++|||++|++||++++|||||++
T Consensus 240 ~~~~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 240 LSDLVLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred HHHhEeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9999987642 125678 5888876578999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.9e-44 Score=359.58 Aligned_cols=267 Identities=28% Similarity=0.508 Sum_probs=223.8
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 009593 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 181 (531)
Q Consensus 103 y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 181 (531)
|+++|.||||+|++.|++||||+++||+|. |..|....+. ...|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~--------~~~~~~~~s~~~~~----------------- 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP--------RFKYDSSKSSTYKD----------------- 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC--------CCccCccCCceeec-----------------
Confidence 789999999999999999999999999997 7777543321 11377777777765
Q ss_pred CCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCC------CC
Q 009593 182 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE------IS 255 (531)
Q Consensus 182 ~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~------~S 255 (531)
..|.|++.|++| .++|.+++|+|+|++. ...++.|||++...+.+ .....+||||||+.. .+
T Consensus 56 -~~~~~~~~Y~~g--~~~g~~~~D~v~~~~~--------~~~~~~fg~~~~~~~~~-~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 56 -TGCTFSITYGDG--SVTGGLGTDTVTIGGL--------TIPNQTFGCATSESGDF-SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred -CCCEEEEEECCC--eEEEEEEEeEEEECCE--------EEeceEEEEEeccCCcc-cccccceEeecCCcccccccCCC
Confidence 459999999997 7899999999999876 56799999999987633 234679999999998 78
Q ss_pred hHHHHHhcCCC-CCcEEEeeecC----CCCcEEECCCCCCCC-eeeeeeecCCC-ceeEEEEeeEEEeCCe--EeecCcc
Q 009593 256 VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ-QSTSFLASNGK-YITYIIGVETCCIGSS--CLKQTSF 326 (531)
Q Consensus 256 ~~~~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~~~-~~~~~v~~~~~-~~~y~V~l~~i~Vgg~--~~~~~~~ 326 (531)
++.+|.++++| +++||+||.+. ..|.|+||++|+.+. ..+.|+++... ..+|.|.+++|.|+++ .......
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~ 203 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGG 203 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCc
Confidence 89999999998 89999999974 689999999999863 45666666553 4899999999999997 4444667
Q ss_pred eEEEecCccceeccHHHHHHHHHHHHhhccCcccccCCCCceeeeecCCCCCCCCCeEEEEecCCcEEEEcCCeEEEEec
Q 009593 327 KAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGT 406 (531)
Q Consensus 327 ~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~itf~f~gg~~~~i~~~~y~~~~~ 406 (531)
.++|||||++++||+++|++|.+++...... ...|+...|.....+|.|+|+|
T Consensus 204 ~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f------------------ 256 (283)
T cd05471 204 GAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF------------------ 256 (283)
T ss_pred EEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE------------------
Confidence 8999999999999999999998888665443 2345777787778999999999
Q ss_pred cccceEEEEEEecCCCceeeCccceeceEEEEeCCCCEEEEee
Q 009593 407 QVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSH 449 (531)
Q Consensus 407 ~~~~~~Cl~i~~~~~~~~ILG~~fl~~~yvvFD~e~~riGfa~ 449 (531)
.+|||.+|||++|++||.+++|||||+
T Consensus 257 ----------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1.2e-30 Score=239.67 Aligned_cols=157 Identities=38% Similarity=0.713 Sum_probs=127.7
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCC----CC
Q 009593 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGT----SC 178 (531)
Q Consensus 103 y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~----~C 178 (531)
||++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|+++.|.... .|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C------------------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~ 62 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC------------------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCC 62 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCC
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC------------------CCcccCCccCCcccccCCCCcchhhcccccccC
Confidence 89999999999999999999999999998 237999999999999999999998542 45
Q ss_pred CCCCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCChHH
Q 009593 179 QNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPS 258 (531)
Q Consensus 179 ~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~~~~S~~~ 258 (531)
......|.|.+.|+++ +.+.|.+++|+|+++...+.. ....++.|||++.+.|.+. ..+||||||++++|+++
T Consensus 63 ~~~~~~C~y~~~y~~~-s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~s 135 (164)
T PF14543_consen 63 CCSNNSCPYSQSYGDG-SSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPS 135 (164)
T ss_dssp TCESSEEEEEEEETTT-EEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHH
T ss_pred CCCcCcccceeecCCC-ccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHH
Confidence 5555679999999995 899999999999999864332 3567999999999987654 56899999999999999
Q ss_pred HHHhcCCCCCcEEEeeec---CCCCcEEECC
Q 009593 259 LLAKAGLIRNSFSMCFDK---DDSGRIFFGD 286 (531)
Q Consensus 259 ~L~~~g~i~~~FS~~L~~---~~~G~l~fGg 286 (531)
||+++ ..++|||||.+ +..|.|+||+
T Consensus 136 Ql~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 136 QLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred HHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 99888 67999999988 3679999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.92 E-value=8.7e-25 Score=200.56 Aligned_cols=142 Identities=27% Similarity=0.501 Sum_probs=115.9
Q ss_pred eEEEEeeEEEeCCeEeec--C-------cceEEEecCccceeccHHHHHHHHHHHHhhccCccc---ccCCCCceeeeec
Q 009593 306 TYIIGVETCCIGSSCLKQ--T-------SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTIT---SFEGYPWKCCYKS 373 (531)
Q Consensus 306 ~y~V~l~~i~Vgg~~~~~--~-------~~~aiiDSGTs~t~LP~~~y~~l~~~i~~~~~~~~~---~~~~~~~~~Cy~~ 373 (531)
+|+|+|++|+||++.+.. . ...+||||||++|+||+++|++|+++|.+++..... ......++.||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 599999999999998873 2 246999999999999999999999999999987642 2334678999999
Q ss_pred CC----CCCCCCCeEEEEecCCcEEEEcCCeEEEEeccccceEEEEEEec---CCCceeeCccceeceEEEEeCCCCEEE
Q 009593 374 SS----QRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCLAIQPV---DGDIGTIGQNFMTGYRVVFDRENLKLG 446 (531)
Q Consensus 374 ~~----~~~~~~P~itf~f~gg~~~~i~~~~y~~~~~~~~~~~Cl~i~~~---~~~~~ILG~~fl~~~yvvFD~e~~riG 446 (531)
+. .....+|+|+|+|.+|.+++|++++|++.... +.+|++|..+ .++..|||..+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 88 45678999999998899999999999998875 7899999998 457899999999999999999999999
Q ss_pred Eee
Q 009593 447 WSH 449 (531)
Q Consensus 447 fa~ 449 (531)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=2.4e-22 Score=171.93 Aligned_cols=107 Identities=36% Similarity=0.537 Sum_probs=90.6
Q ss_pred EEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCC-CCCCCCCCccccCCCCCCCCCCCCCCCC
Q 009593 105 TWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEY-SPSASSTSKHLSCSHRLCDLGTSCQNPK 182 (531)
Q Consensus 105 ~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f-~ps~SsT~~~~~C~~~~C~~~~~C~~~~ 182 (531)
++|.||||+|++.|+|||||+++||+|. |..|.... .+.| +|++|+|++..
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~----------~~~~~~~~~sst~~~~----------------- 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS----------HSSYDDPSASSTYSDN----------------- 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc----------ccccCCcCCCCCCCCC-----------------
Confidence 3789999999999999999999999997 77665332 1455 99999999873
Q ss_pred CCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeec
Q 009593 183 QPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGL 249 (531)
Q Consensus 183 ~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGL 249 (531)
.|.|.+.|++| .+.|.+++|+|+|++. ...++.|||++...+.++.....||||||
T Consensus 54 -~~~~~~~Y~~g--~~~g~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 54 -GCTFSITYGTG--SLSGGLSTDTVSIGDI--------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred -CcEEEEEeCCC--eEEEEEEEEEEEECCE--------EECCEEEEEEEecCCccccccccccccCC
Confidence 49999999997 6789999999999875 56799999999998876555577999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.61 E-value=0.00026 Score=58.15 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=61.6
Q ss_pred eEEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCCCCcccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 009593 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 180 (531)
Q Consensus 102 ~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~ 180 (531)
.|++++.|+ .+++.+++|||++.+|+... ...+. . ...
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~---------------~-------~~~----------------- 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG---------------L-------PLT----------------- 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC---------------C-------Ccc-----------------
Confidence 478999999 89999999999999999863 11121 0 000
Q ss_pred CCCCCceEEecCCCCceeeEEEEEEEEEEecCCCCccccccccceEEEEEEeccCCCCCCCCCCeeeecCC
Q 009593 181 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGL 251 (531)
Q Consensus 181 ~~~~c~~~i~Y~~g~s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLG~ 251 (531)
......+...+| .........+.++|++. ...++.+........ ..|||||+..
T Consensus 41 --~~~~~~~~~~~G-~~~~~~~~~~~i~ig~~--------~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 41 --LGGKVTVQTANG-RVRAARVRLDSLQIGGI--------TLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred --CCCcEEEEecCC-CccceEEEcceEEECCc--------EEeccEEEEeCCccc------CCceEeChHH
Confidence 124566677766 45555666888999875 455666655544321 4689999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.24 E-value=0.19 Score=43.54 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=29.6
Q ss_pred cCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEec
Q 009593 95 LGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPC 131 (531)
Q Consensus 95 l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c 131 (531)
+....+..|++++.|. .+++.++||||++.+-+..
T Consensus 4 i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 4 LAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNE 38 (121)
T ss_pred EEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 3344577899999997 7899999999999998875
No 29
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.15 E-value=0.23 Score=43.21 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=23.4
Q ss_pred CCceeeCccceeceEEEEeCCCCEEEE
Q 009593 421 GDIGTIGQNFMTGYRVVFDRENLKLGW 447 (531)
Q Consensus 421 ~~~~ILG~~fl~~~yvvFD~e~~riGf 447 (531)
....|||..||+.+..+.|.++++|-+
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 345899999999999999999998753
No 30
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.81 E-value=0.61 Score=40.36 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=27.8
Q ss_pred eeEEEEeeEEEeCCeEeecCcceEEEecCccceeccHHHHHHH
Q 009593 305 ITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (531)
Q Consensus 305 ~~y~V~l~~i~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~l 347 (531)
++|.++ +.|||+.+ .++||||.+.+.++++..+++
T Consensus 10 g~~~v~---~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 677666 67888754 599999999999999985444
No 31
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.53 E-value=0.3 Score=39.16 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=20.6
Q ss_pred EEEecCCCeEEEEEEEcCCCceEEec
Q 009593 106 WIDIGTPNVSFLVALDAGSDLLWIPC 131 (531)
Q Consensus 106 ~i~IGTP~q~~~v~vDTGS~~~Wv~c 131 (531)
++.|+ .+++.+++|||++.+.+..
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~ 25 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISR 25 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECH
Confidence 56777 7899999999999988865
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=93.52 E-value=0.15 Score=45.02 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=25.6
Q ss_pred ceeeCccceeceEEEEeCCCCEEEEeeC
Q 009593 423 IGTIGQNFMTGYRVVFDRENLKLGWSHS 450 (531)
Q Consensus 423 ~~ILG~~fl~~~yvvFD~e~~riGfa~~ 450 (531)
..|||..+|+.+..+-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 5899999999999999999999999754
No 33
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.48 E-value=0.73 Score=39.99 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=27.1
Q ss_pred CceEEEEEEecCCCeEEEEEEEcCCCceEEecC
Q 009593 100 GWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD 132 (531)
Q Consensus 100 ~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~ 132 (531)
...+|+++.|+ .+++.+++|||++..++.-.
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 45678899999 88999999999999999764
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=92.64 E-value=0.69 Score=39.06 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.0
Q ss_pred CceeeCccceeceEEEEeCCCCEE
Q 009593 422 DIGTIGQNFMTGYRVVFDRENLKL 445 (531)
Q Consensus 422 ~~~ILG~~fl~~~yvvFD~e~~ri 445 (531)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 468999999999999999988753
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.95 E-value=0.28 Score=39.91 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=24.9
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceEEec
Q 009593 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPC 131 (531)
Q Consensus 103 y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c 131 (531)
||+++.|+ .+++.+++||||+..++.-
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~ 27 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISE 27 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCH
Confidence 57899999 8999999999999999986
No 36
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=85.69 E-value=10 Score=38.82 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=19.8
Q ss_pred EEEEEecCCC----eEE-EEEEEcCCCceEEec
Q 009593 104 YTWIDIGTPN----VSF-LVALDAGSDLLWIPC 131 (531)
Q Consensus 104 ~~~i~IGTP~----q~~-~v~vDTGS~~~Wv~c 131 (531)
|+.|.|=.|. |.+ +|+|||||.=+=|..
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~ 57 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFA 57 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHH
Confidence 4556664443 555 899999999887765
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=83.51 E-value=2.4 Score=32.90 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=27.8
Q ss_pred CceEEEEEEecCCCeEEEEEEEcCCCceEEecC
Q 009593 100 GWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD 132 (531)
Q Consensus 100 ~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~ 132 (531)
...+++.+.|| .+.+..++|||++...|+..
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 56788999999 79999999999999999874
No 38
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=81.48 E-value=6.9 Score=35.38 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=19.0
Q ss_pred cceEEEecCccceeccHHHHHHH
Q 009593 325 SFKAIVDSGSSFTFLPKEVYETI 347 (531)
Q Consensus 325 ~~~aiiDSGTs~t~LP~~~y~~l 347 (531)
...++||||+...+.-.++.+.|
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhh
Confidence 34599999999999999985555
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=80.53 E-value=2.6 Score=34.68 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.0
Q ss_pred EEEEEecCCCeEEEEEEEcCCCceEEec
Q 009593 104 YTWIDIGTPNVSFLVALDAGSDLLWIPC 131 (531)
Q Consensus 104 ~~~i~IGTP~q~~~v~vDTGS~~~Wv~c 131 (531)
+.+|.|. .+++.+++||||+.+-++.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~ 32 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISE 32 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecc
Confidence 4578888 7899999999999999986
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=80.14 E-value=2.5 Score=33.56 Aligned_cols=29 Identities=10% Similarity=0.400 Sum_probs=23.7
Q ss_pred EEeCCeEeecCcceEEEecCccceeccHHHHHHH
Q 009593 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (531)
Q Consensus 314 i~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~l 347 (531)
+.|||+.+ .++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 56788754 599999999999999996555
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=77.16 E-value=4.3 Score=31.42 Aligned_cols=29 Identities=28% Similarity=0.599 Sum_probs=24.0
Q ss_pred EEeCCeEeecCcceEEEecCccceeccHHHHHHH
Q 009593 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (531)
Q Consensus 314 i~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~l 347 (531)
+.|+|+.+. +++|||.+..+++++..+.|
T Consensus 13 ~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 567776654 99999999999999996555
No 42
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=76.54 E-value=12 Score=32.56 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=22.8
Q ss_pred EEeCCeEeecCcceEEEecCccceeccHHHHHHH
Q 009593 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (531)
Q Consensus 314 i~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~l 347 (531)
+.+||+.+. |+||||...+.++....+++
T Consensus 29 ~~ing~~vk-----A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK-----AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE-----EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE-----EEEeCCCCccccCHHHHHHc
Confidence 678898775 99999999999999995554
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=76.26 E-value=4.2 Score=32.89 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=25.4
Q ss_pred EEEeCCeEeecCcceEEEecCccceeccHHHHHHH
Q 009593 313 TCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (531)
Q Consensus 313 ~i~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~l 347 (531)
.+.|||+.+. .++|||.+.+.++++.+.++
T Consensus 4 ~~~Ing~~i~-----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-----EEEcCCcceEEeCHHHHHHh
Confidence 3678888765 99999999999999996655
No 44
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=70.57 E-value=5.9 Score=32.07 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.9
Q ss_pred EEEecCCCeEEEEEEEcCCCceEEec
Q 009593 106 WIDIGTPNVSFLVALDAGSDLLWIPC 131 (531)
Q Consensus 106 ~i~IGTP~q~~~v~vDTGS~~~Wv~c 131 (531)
.+.|+ .|.+.+++|||+|++-+..
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEcc
Confidence 45677 8999999999999999975
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=69.69 E-value=8.5 Score=30.79 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=23.1
Q ss_pred EEeCCeEeecCcceEEEecCccceeccHHHHHHH
Q 009593 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (531)
Q Consensus 314 i~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~l 347 (531)
+.||++.+ .++||||.+.++++.+..+++
T Consensus 7 v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 66777654 599999999999999885544
No 46
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=64.97 E-value=43 Score=27.22 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=17.2
Q ss_pred CcceEEEecCccceeccHHH
Q 009593 324 TSFKAIVDSGSSFTFLPKEV 343 (531)
Q Consensus 324 ~~~~aiiDSGTs~t~LP~~~ 343 (531)
++...+||||.....+|...
T Consensus 8 s~~~fLVDTGA~vSviP~~~ 27 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASS 27 (89)
T ss_pred CCcEEEEeCCCceEeecccc
Confidence 45568999999999999886
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=60.93 E-value=11 Score=30.14 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEecCCCeEEEEEEEcCCCceEEec
Q 009593 106 WIDIGTPNVSFLVALDAGSDLLWIPC 131 (531)
Q Consensus 106 ~i~IGTP~q~~~v~vDTGS~~~Wv~c 131 (531)
.+.|. .+++.+++|||++.+-+..
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~ 25 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKS 25 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECH
Confidence 35566 7899999999999999976
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=60.18 E-value=12 Score=29.86 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=23.5
Q ss_pred EEeCCeEeecCcceEEEecCccceeccHHHHHHH
Q 009593 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (531)
Q Consensus 314 i~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~l 347 (531)
+.|||+.+. .++|||.+.+.+++...+.+
T Consensus 3 v~InG~~~~-----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----EEEECCCCeEEECHHHhhhc
Confidence 567777654 89999999999999986543
No 49
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=58.25 E-value=87 Score=26.07 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=23.5
Q ss_pred EE-EEEEecCCCceeeCccceeceEEEEeCCC
Q 009593 412 FC-LAIQPVDGDIGTIGQNFMTGYRVVFDREN 442 (531)
Q Consensus 412 ~C-l~i~~~~~~~~ILG~~fl~~~yvvFD~e~ 442 (531)
-| +.+....+-..+||...|+++-..-|+++
T Consensus 72 ~CSftVld~~~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 72 ECSAQVVDDNEKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred eEEEEEEcCCCcceEeeHHHHhhcceeeeccC
Confidence 37 56666544568999999999988888764
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=52.69 E-value=14 Score=30.16 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEeCCeEeecCcceEEEecCccceeccHHH
Q 009593 313 TCCIGSSCLKQTSFKAIVDSGSSFTFLPKEV 343 (531)
Q Consensus 313 ~i~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~ 343 (531)
.|.++|+.+ .++||||...+++++..
T Consensus 9 ~v~i~g~~i-----~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI-----KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE-----EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE-----EEEEecCCCcceecccc
Confidence 356677654 49999999999999876
No 51
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=49.09 E-value=57 Score=30.79 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=29.3
Q ss_pred ceeEEEEeeEEEeCCeEeecCcceEEEecCccceeccHHHHHH
Q 009593 304 YITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYET 346 (531)
Q Consensus 304 ~~~y~V~l~~i~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~ 346 (531)
.+||.++ ..|||+.++ .++|||.|.+.++++.-+.
T Consensus 103 ~GHF~a~---~~VNGk~v~-----fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-----FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCcEEEE---EEECCEEEE-----EEEecCcceeecCHHHHHH
Confidence 3788877 689999876 8999999999999998443
No 52
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=48.98 E-value=61 Score=33.17 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=34.0
Q ss_pred EE-EEEEecCCCceeeCccceeceEEEEeCCCCEEEEeeCCC
Q 009593 412 FC-LAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 452 (531)
Q Consensus 412 ~C-l~i~~~~~~~~ILG~~fl~~~yvvFD~e~~riGfa~~~C 452 (531)
.| +.+....+-...||-..||++--.-|++++++=++...-
T Consensus 307 ~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~t 348 (380)
T KOG0012|consen 307 PCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTET 348 (380)
T ss_pred ccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCCCc
Confidence 47 677776555689999999999999999999999887644
No 53
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=48.74 E-value=21 Score=29.11 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=23.6
Q ss_pred EEeCCeEeecCcceEEEecCccceeccHHHHHHH
Q 009593 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (531)
Q Consensus 314 i~Vgg~~~~~~~~~aiiDSGTs~t~LP~~~y~~l 347 (531)
+.++|+ ....+.+|||.+...+|...|+.+
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhh
Confidence 566663 134589999999999999997766
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=44.52 E-value=17 Score=31.47 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=25.9
Q ss_pred ceEEEEEEecCCCeEEEEEEEcCCCceEEecC-CCCCC
Q 009593 101 WLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCA 137 (531)
Q Consensus 101 ~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~-C~~C~ 137 (531)
...|+++.|+ .+++.+.+|||...+-+.-. +..|.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 3578899999 89999999999999999875 35564
No 55
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.48 E-value=18 Score=31.17 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=17.7
Q ss_pred EEEecCcc-ceeccHHHHHHH
Q 009593 328 AIVDSGSS-FTFLPKEVYETI 347 (531)
Q Consensus 328 aiiDSGTs-~t~LP~~~y~~l 347 (531)
.+||||.+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 49999999 999999997665
No 56
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=41.92 E-value=84 Score=29.67 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=20.7
Q ss_pred CceeeCccceeceEEEEeCCCCEEEEeeC
Q 009593 422 DIGTIGQNFMTGYRVVFDRENLKLGWSHS 450 (531)
Q Consensus 422 ~~~ILG~~fl~~~yvvFD~e~~riGfa~~ 450 (531)
-..|||.||+|.|+=-...+ .+|-|..-
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~~ 118 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHKK 118 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEeC
Confidence 45899999999886555554 46777763
No 57
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=38.05 E-value=64 Score=30.46 Aligned_cols=81 Identities=9% Similarity=-0.025 Sum_probs=56.0
Q ss_pred CCceeecCCCCCceEEEEEEecCCCeEEEEEEEcCCCceEEecCCCCCCCCcccccccCCCCCCCCCCCCCCCCccccCC
Q 009593 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCS 168 (531)
Q Consensus 89 ~~~~~~l~~~~~~~y~~~i~IGTP~q~~~v~vDTGS~~~Wv~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~ 168 (531)
|...+.+....+..|+++..|- .|++..+||||-+.+-++.. ... .--||.+.
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~--dA~-------------RlGid~~~---------- 144 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEE--DAR-------------RLGIDLNS---------- 144 (215)
T ss_pred CceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHH--HHH-------------HhCCCccc----------
Confidence 4446667777788888999997 99999999999999988752 100 01344432
Q ss_pred CCCCCCCCCCCCCCCCCceEEecCCCCceeeE-EEEEEEEEEecC
Q 009593 169 HRLCDLGTSCQNPKQPCPYTMDYYTENTSSSG-LLVEDILHLISG 212 (531)
Q Consensus 169 ~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G-~~~~D~v~lg~~ 212 (531)
...++.+.-.+| ...+ .+--|.|.||+.
T Consensus 145 --------------l~y~~~v~TANG--~~~AA~V~Ld~v~IG~I 173 (215)
T COG3577 145 --------------LDYTITVSTANG--RARAAPVTLDRVQIGGI 173 (215)
T ss_pred --------------cCCceEEEccCC--ccccceEEeeeEEEccE
Confidence 135666777776 4444 577899999875
No 58
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=30.20 E-value=67 Score=29.24 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.3
Q ss_pred EEEEecCCCeEEEEEEEcCCCceEEec
Q 009593 105 TWIDIGTPNVSFLVALDAGSDLLWIPC 131 (531)
Q Consensus 105 ~~i~IGTP~q~~~v~vDTGS~~~Wv~c 131 (531)
..+.+++-..++.+++||||..-.+..
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeeh
Confidence 367777778999999999999998876
No 59
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=22.50 E-value=1.1e+02 Score=25.50 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=20.0
Q ss_pred EEEEecCC----CeEEEEEEEcCCCceE-Eec
Q 009593 105 TWIDIGTP----NVSFLVALDAGSDLLW-IPC 131 (531)
Q Consensus 105 ~~i~IGTP----~q~~~v~vDTGS~~~W-v~c 131 (531)
+++.|..| .-++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 46777777 2378899999999765 654
Done!