BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009597
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 124/264 (46%), Gaps = 13/264 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 75 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 133
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 134 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 191 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 249
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 250 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 307
Query: 509 EWHPLEQSKVATCGW--DGLIKYW 530
HP E +A+ D IK W
Sbjct: 308 ACHPTENI-IASAALENDKTIKLW 330
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 404 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGY 462
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG-- 89
Query: 463 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 522
V +S D ++S + WD S K +TLK H C ++P + + + +
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 148
Query: 523 WDGLIKYWD 531
+D ++ WD
Sbjct: 149 FDESVRIWD 157
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 10/246 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 77 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 135
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 136 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 192
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 193 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 251
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 252 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 309
Query: 509 EWHPLE 514
HP E
Sbjct: 310 ACHPTE 315
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 222
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 223 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 279
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 280 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 329
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 404 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGY 462
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG-- 91
Query: 463 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 522
V +S D ++S + WD S K +TLK H C ++P + + + +
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 150
Query: 523 WDGLIKYWD 531
+D ++ WD
Sbjct: 151 FDESVRIWD 159
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 70 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 128
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 129 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 185
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 186 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 244
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 245 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 302
Query: 509 EWHPLEQ 515
HP E
Sbjct: 303 ACHPTEN 309
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 215
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 216 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 272
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 273 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 322
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 463
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG--I 85
Query: 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523
V +S D ++S + WD S K +TLK H C ++P + + + + +
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 144
Query: 524 DGLIKYWD 531
D ++ WD
Sbjct: 145 DESVRIWD 152
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 52 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 110
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 111 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 167
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 168 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 226
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 227 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 284
Query: 509 EWHPLEQ 515
HP E
Sbjct: 285 ACHPTEN 291
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 197
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 198 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 254
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 255 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 304
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 463
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG--I 67
Query: 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523
V +S D ++S + WD S K +TLK H C ++P + + + + +
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 126
Query: 524 DGLIKYWD 531
D ++ WD
Sbjct: 127 DESVRIWD 134
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 117
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 118 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 233
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 234 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 509 EWHPLEQ 515
HP E
Sbjct: 292 ACHPTEN 298
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 205 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 262 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 463
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG--I 74
Query: 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523
V +S D ++S + WD S K +TLK H C ++P + + + + +
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 133
Query: 524 DGLIKYWD 531
D ++ WD
Sbjct: 134 DESVRIWD 141
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 117
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 118 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 233
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 234 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 509 EWHPLEQ 515
HP E
Sbjct: 292 ACHPTEN 298
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 205 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 262 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 463
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG--I 74
Query: 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523
V +S D ++S + WD S K +TLK H C ++P + + + + +
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 133
Query: 524 DGLIKYWD 531
D ++ WD
Sbjct: 134 DESVRIWD 141
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 53 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 111
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 112 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 227
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 228 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 509 EWHPLEQ 515
HP E
Sbjct: 286 ACHPTEN 292
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 199 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 256 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 305
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 463
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG--I 68
Query: 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523
V +S D ++S + WD S K +TLK H C ++P + + + + +
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 127
Query: 524 DGLIKYWD 531
D ++ WD
Sbjct: 128 DESVRIWD 135
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 117
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 118 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 233
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 234 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 509 EWHPLEQ 515
HP E
Sbjct: 292 ACHPTEN 298
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 205 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 262 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 463
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG--I 74
Query: 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523
V +S D ++S + WD S K +TLK H C ++P + + + + +
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 133
Query: 524 DGLIKYWD 531
D ++ WD
Sbjct: 134 DESVRIWD 141
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 53 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 111
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 112 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 227
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 228 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 509 EWHPLEQ 515
HP E
Sbjct: 286 ACHPTEN 292
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 199 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 256 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 305
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 463
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG--I 68
Query: 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523
V +S D ++S + WD S K +TLK H C ++P + + + + +
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 127
Query: 524 DGLIKYWD 531
D ++ WD
Sbjct: 128 DESVRIWD 135
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 10/246 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 114
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 115 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 230
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 231 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 509 EWHPLE 514
HP E
Sbjct: 289 ACHPTE 294
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 202 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 259 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 395 RVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKK 452
R EF P +K+ H ++ S+ PN WLA+ S D I I+ + +F+ K
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----K 62
Query: 453 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 512
+GH + V +S D ++S + WD S K +TLK H C ++P
Sbjct: 63 TISGHKLG--ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 513 LEQSKVATCGWDGLIKYWD 531
+ + + + +D ++ WD
Sbjct: 121 -QSNLIVSGSFDESVRIWD 138
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 54 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 112
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 113 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 169
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 170 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 228
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 229 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 286
Query: 509 EWHPLEQ 515
HP E
Sbjct: 287 ACHPTEN 293
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 199
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 200 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 256
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 257 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 306
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 463
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG--I 69
Query: 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523
V +S D ++S + WD S K +TLK H C ++P + + + + +
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 128
Query: 524 DGLIKYWD 531
D ++ WD
Sbjct: 129 DESVRIWD 136
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 58 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 116
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 117 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 173
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 174 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 232
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 233 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 290
Query: 509 EWHPLEQ 515
HP E
Sbjct: 291 ACHPTEN 297
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 203
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 204 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 260
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 261 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 310
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 463
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG--I 73
Query: 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523
V +S D ++S + WD S K +TLK H C ++P + + + + +
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 132
Query: 524 DGLIKYWD 531
D ++ WD
Sbjct: 133 DESVRIWD 140
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 49 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 107
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 108 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 164
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 165 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 223
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 224 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 281
Query: 509 EWHPLEQ 515
HP E
Sbjct: 282 ACHPTEN 288
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 194
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 195 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 252 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 301
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 463
+K+ H ++ S+ PN WLA+ S D I I+ + +F+ K +GH +
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLG--I 64
Query: 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523
V +S D ++S + WD S K +TLK H C ++P + + + + +
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 123
Query: 524 DGLIKYWD 531
D ++ WD
Sbjct: 124 DESVRIWD 131
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 10/246 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 114
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 115 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 230
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 231 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 509 EWHPLE 514
HP E
Sbjct: 289 ACHPTE 294
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 202 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 259 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 398 EFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFA 455
EF P +K+ H ++ S+ PN WLAA S D I I+ + +F+ K +
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE----KTIS 65
Query: 456 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 515
GH + V +S D ++S + WD S K +TLK H C ++P +
Sbjct: 66 GHKLG--ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 516 SKVATCGWDGLIKYWD 531
+ + + +D ++ WD
Sbjct: 123 NLIVSGSFDESVRIWD 138
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 10/246 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 114
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + + H V+ + F V+SS
Sbjct: 115 CCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 230
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 231 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 509 EWHPLE 514
HP E
Sbjct: 289 ACHPTE 294
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GKC++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 202 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 259 SEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 395 RVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKK 452
R EF P +K+ H ++ S+ PN WLA+ S D I I+ + +F+ K
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----K 62
Query: 453 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 512
+GH + V +S D ++S + WD S K +TLK H C ++P
Sbjct: 63 TISGHKLG--ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 513 LEQSKVATCGWDGLIKYWD 531
+ + + + +D ++ WD
Sbjct: 121 -QSNLIVSGSFDESVRIWD 138
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 114
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + H V+ + F V+SS
Sbjct: 115 CCNFNP---QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCL- 230
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 231 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 509 EWHPLEQ 515
HP E
Sbjct: 289 ACHPTEN 295
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
G C++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 202 KFSPNG---KYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 259 SEDNMVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 10/247 (4%)
Query: 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV- 330
+ GK +T GH + D+++ +D ++AS DK +K WD +G+ ++T G YV
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVF 114
Query: 331 -VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
NP + N++++G D+ + WD+ T + H V+ + F V+SS
Sbjct: 115 CCNFNP---QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D R+W+ +K + + + + PN ++ A +LDN + ++ + L
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL- 230
Query: 450 KKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
K + GH Y NFS G++++SG + + W+ ++ ++ + L+ H V I
Sbjct: 231 --KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 509 EWHPLEQ 515
HP E
Sbjct: 289 ACHPTEN 295
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
G C++T HS V + F DG+ +++SYD + WDT +GQ ++T P V V
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTS 388
K +P+ +LA D + WD + + + Y H I V + V+
Sbjct: 202 KFSPNG---KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439
S+D + +W +++ + + H + S + HP N +A+ +L+N I
Sbjct: 259 SEDNMVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 126/265 (47%), Gaps = 26/265 (9%)
Query: 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV-- 330
+G+ ++T GHS +VR ++F DG +AS DK +K W+ GQ+++T TG V
Sbjct: 87 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWG 144
Query: 331 VKLNPDDDKQNILLAGMSDKKIVQ-WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
V +PD +A SD K V+ W+ N ++ Q H +V + F + ++S
Sbjct: 145 VAFSPDGQT----IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASAS 199
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
DDK++++W ++ H S+ ++ P+ +A+ S D + ++ N
Sbjct: 200 DDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLW--------N 249
Query: 450 KKKRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI 506
+ + + G++ VN F PDG+ + S + W+ ++ ++ +TL H
Sbjct: 250 RNGQLL-QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 307
Query: 507 GCEWHPLEQSKVATCGWDGLIKYWD 531
G + P Q+ +A+ D +K W+
Sbjct: 308 GVAFSPDGQT-IASASDDKTVKLWN 331
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 124/260 (47%), Gaps = 16/260 (6%)
Query: 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 332
+G+ ++T GHS +V ++F DG +AS DK +K W+ GQ+++T TG V
Sbjct: 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRG 390
Query: 333 LNPDDDKQNILLAGMSDKKIVQ-WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 391
+ D Q I A SD K V+ W+ N ++ Q H +V + F ++ ++SDD
Sbjct: 391 VAFSPDGQTI--ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447
Query: 392 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 451
K++++W ++ H S+ ++ P+ +A+ S D + +++ +
Sbjct: 448 KTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----L 501
Query: 452 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 511
+ GH + V FSPDG+ + S + W+ ++ ++ +TL H G +
Sbjct: 502 QTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 558
Query: 512 PLEQSKVATCGWDGLIKYWD 531
P Q+ +A+ D +K W+
Sbjct: 559 PDGQT-IASASSDKTVKLWN 577
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 123/260 (47%), Gaps = 16/260 (6%)
Query: 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 332
+G+ ++T GHS +V ++F DG +AS DK +K W+ GQ+++T TG V
Sbjct: 46 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRG 103
Query: 333 LNPDDDKQNILLAGMSDKKIVQ-WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 391
+ D Q I A SD K V+ W+ N ++ Q H +V + F + ++SDD
Sbjct: 104 VAFSPDGQTI--ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160
Query: 392 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 451
K++++W ++ H S+ ++ P+ +A+ S D + +++ +
Sbjct: 161 KTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL----L 214
Query: 452 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 511
+ GH + V FSPDG+ + S + W+ ++ ++ +TL H G +
Sbjct: 215 QTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFR 271
Query: 512 PLEQSKVATCGWDGLIKYWD 531
P Q+ +A+ D +K W+
Sbjct: 272 PDGQT-IASASDDKTVKLWN 290
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 124/262 (47%), Gaps = 20/262 (7%)
Query: 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV-- 330
+G+ ++T GHS +V ++F DG +AS DK +K W+ GQ+++T TG V
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWG 308
Query: 331 VKLNPDDDKQNILLAGMSDKKIVQ-WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
V +PD +A SD K V+ W+ N + + Q H +V + F + ++S
Sbjct: 309 VAFSPDGQT----IASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
DDK++++W ++ H S+ ++ P+ +A+ S D + +++ +
Sbjct: 364 DDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--- 418
Query: 450 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 509
+ GH + + V FSPD + + S + W+ ++ ++ +TL H G
Sbjct: 419 -LQTLTGHSSSVWG--VAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 474
Query: 510 WHPLEQSKVATCGWDGLIKYWD 531
+ P Q+ +A+ D +K W+
Sbjct: 475 FSPDGQT-IASASDDKTVKLWN 495
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 119/252 (47%), Gaps = 20/252 (7%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQ 340
HS +VR ++F DG +AS DK +K W+ GQ+++T TG V V +PD
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQT- 71
Query: 341 NILLAGMSDKKIVQ-WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 399
+A SD K V+ W+ N ++ Q H +V + F + ++SDDK++++W
Sbjct: 72 ---IASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 400 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 459
++ H S+ ++ P+ +A+ S D + +++ + + GH
Sbjct: 128 NGQLLQTLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSS 181
Query: 460 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 519
+ + V FSPDG+ + S + W+ ++ ++ +TL H G + P Q+ +A
Sbjct: 182 SVWG--VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT-IA 237
Query: 520 TCGWDGLIKYWD 531
+ D +K W+
Sbjct: 238 SASDDKTVKLWN 249
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 357 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 416
M KE + H +V + F + ++SDDK++++W ++ H S+
Sbjct: 4 MGVKE-RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSV 60
Query: 417 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 476
++ P+ +A+ S D + +++ + + GH + V FSPDG+ +
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGH--SSSVRGVAFSPDGQTIA 114
Query: 477 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
S + W+ ++ ++ +TL H G + P Q+ +A+ D +K W+
Sbjct: 115 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWN 167
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 30/244 (12%)
Query: 295 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 354
D K ++ D IK WD T + R TG V+ L D + +++ G SD +
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQYD---ERVIITGSSDSTVRV 197
Query: 355 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPH 412
WD+NT E+ H AV + F +N VT S D+S+ VW+ P + ++ + H
Sbjct: 198 WDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 413 MHSMPSISLHPNTNWLAAQSLDNQILIY--STRERFQ-LNKKKRFAGHIVAGYACQVNFS 469
++ + + ++ + S D I ++ ST E + LN KR G AC
Sbjct: 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-------GIAC---LQ 303
Query: 470 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV--CIGCEWHPLEQSKVATCGWDGLI 527
R V+SG + WD + R L+ HE + CI + ++ + +DG I
Sbjct: 304 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI-----RFDNKRIVSGAYDGKI 358
Query: 528 KYWD 531
K WD
Sbjct: 359 KVWD 362
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 312
G C+R GH + VR I F D + ++ +YD IK WD
Sbjct: 326 GACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 362
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 101/263 (38%), Gaps = 52/263 (19%)
Query: 278 RTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFST----GKIPYVVK 332
R GH + D T+ +T S D+ WD TGQ I F + G V+
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 333 LNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 391
L+ + N+ ++G D + WD+ T + Y H G +N++ F +RF T SDD
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Query: 392 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 451
+ R+++ H + + P+ N DN++ I ++
Sbjct: 271 GTCRLFDMRTG-----------HQLQVYNREPDRN-------DNELPIVTS--------- 303
Query: 452 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL----KCHEGVCIG 507
V FS GR + +G G C+ WD ++ L HEG I
Sbjct: 304 --------------VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR-IS 348
Query: 508 CEWHPLEQSKVATCGWDGLIKYW 530
C + S + T WD +K W
Sbjct: 349 CLGLSSDGSALCTGSWDKNLKIW 371
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 19/229 (8%)
Query: 276 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNP 335
C RT GHS V + + + ++AS D + W+ T Q P+V++
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAF 116
Query: 336 DDDKQNILLAGMSDKKIVQWDMNTKE-------ITQEYDQHLGAVNTITFV-DSNRRFVT 387
+ Q++ G+ D ++++++ +++ H G ++ +V D R +T
Sbjct: 117 APNGQSVACGGL-DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 388 SSDDKSLRVWEF--GIPVVIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYST 442
S D++ +W+ G + I P H+ +SL N+ N + S D + ++
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 443 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 491
R + + GH G V F PDG+ +G +G C +D ++
Sbjct: 236 --RITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST------GKIP 328
+ +RTY GH + + F DG +F T S D + +D TG ++ ++ ++P
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 329 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY----DQHLGAVNTITFVDSNRR 384
V + + +L AG S+ WD E+ + H G ++ +
Sbjct: 300 IVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358
Query: 385 FVTSSDDKSLRVWEF 399
T S DK+L++W F
Sbjct: 359 LCTGSWDKNLKIWAF 373
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 410 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 469
+ H + S+ P NW+ + S D ++++++ L +K A + + + F+
Sbjct: 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA-----LTSQKTHAIKLHCPWVMECAFA 117
Query: 470 PDGRFVMSGDGEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 522
P+G+ V G + C ++ S V R L H+G C++ P +++++ T
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 523 WDGLIKYWD 531
D WD
Sbjct: 178 GDQTCVLWD 186
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF-STGKIPYVVKLNPDDDKQN 341
H+ + SF N + LTAS D WD E+GQ++++F G + L P + N
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE-TGN 211
Query: 342 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 399
++G DKK + WDM + + Q ++ H VN++ + S F + SDD + R+++
Sbjct: 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 20/187 (10%)
Query: 354 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 413
Q+ M T+ + H V + + RR V+SS D + VW+ ++ H
Sbjct: 51 QFVMKTRRTLK---GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT------NKEHA 101
Query: 414 HSMP-----SISLHPNTNWLAAQSLDNQILIYST---RERFQLNKKKRFAGHIVAGYACQ 465
+MP + + P+ +A LDN+ +Y + KKK A H Y
Sbjct: 102 VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH--TNYLSA 159
Query: 466 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV-ATCGWD 524
+F+ +++ G+G C WD +S ++ ++ H + + P E + G D
Sbjct: 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219
Query: 525 GLIKYWD 531
WD
Sbjct: 220 KKAMVWD 226
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/313 (19%), Positives = 108/313 (34%), Gaps = 53/313 (16%)
Query: 266 VEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET---------- 315
VE F K RT GH V + +C D + +++S D + WD+ T
Sbjct: 46 VEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP 105
Query: 316 ------------------GQVIRTFSTGKIPYVVKLNPDDDKQNI--------------- 342
G + S + + N K+++
Sbjct: 106 CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165
Query: 343 ---LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV--DSNRRFVTSSDDKSLRVW 397
+L D WD+ + ++ Q + H V + ++ FV+ DK VW
Sbjct: 166 DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 398 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 457
+ ++ E H + S+ +P+ + A+ S D +Y R ++ + +
Sbjct: 226 DMRSGQCVQAF-ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES-- 282
Query: 458 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 517
I+ G A V+FS GR + +G + WD L HE P + +
Sbjct: 283 IIFG-ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTA 340
Query: 518 VATCGWDGLIKYW 530
+ WD ++ W
Sbjct: 341 FCSGSWDHTLRVW 353
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 109/262 (41%), Gaps = 34/262 (12%)
Query: 272 FHG-KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 330
F G +C+RT GH V +S +G ++AS DK IK W+ +TG ++TF TG +V
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWV 237
Query: 331 VKLNPDDDKQNILLAGMSDKKIVQ-WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
+ P+ D L+A S+ + V+ W + TKE E +H V I++ + + + S
Sbjct: 238 RMVRPNQD--GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES-SYSSIS 294
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
+ + G P +L + S D I ++ L
Sbjct: 295 EATGSETKKSGKP----------------------GPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 450 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 509
GH + V F G+F++S + WD+K+ + +TL HE +
Sbjct: 333 T---LVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 387
Query: 510 WHPLEQSKVATCGWDGLIKYWD 531
+H V T D +K W+
Sbjct: 388 FHKT-APYVVTGSVDQTVKVWE 408
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 19/188 (10%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVK 332
G C++T+ GH + VR + DGT + S D+ ++ W T + + + +
Sbjct: 224 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 283
Query: 333 LNPDDDKQNI-----------------LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 375
P+ +I LL+G DK I WD++T H V
Sbjct: 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 343
Query: 376 ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 435
+ F + ++ +DDK+LRVW++ +K ++ H H + S+ H ++ S+D
Sbjct: 344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQ 402
Query: 436 QILIYSTR 443
+ ++ R
Sbjct: 403 TVKVWECR 410
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 111/266 (41%), Gaps = 21/266 (7%)
Query: 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 341
GH V + F + ++AS D IK WD ETG RT G V ++ D +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGK- 163
Query: 342 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 401
+L + +D I WD E + H V++++ + + V++S DK++++WE
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 402 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA- 460
+K + H + + + + +A+ S D + ++ + + + R H+V
Sbjct: 224 GYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVEC 281
Query: 461 -GYACQVNFSP--------------DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC 505
+A + ++S G F++SG + WD + TL H+
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341
Query: 506 IGCEWHPLEQSKVATCGWDGLIKYWD 531
G +H + + +C D ++ WD
Sbjct: 342 RGVLFHSGGKF-ILSCADDKTLRVWD 366
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 53/254 (20%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---------- 323
G +R++ GHS V+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD 114
Query: 324 ------------------------------------TGKIPYVVKLNPDDDKQNILLAGM 347
++ V DDD I+ AG
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG- 173
Query: 348 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 407
+DK + W++N +I ++ H +NT+T ++ D + +W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 408 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YAC 464
+S + S++ PN WLAA + I ++S ++ ++ + FAG+ A +A
Sbjct: 234 LSA--QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAV 290
Query: 465 QVNFSPDGRFVMSG 478
+ +S DG+ + +G
Sbjct: 291 SLAWSADGQTLFAG 304
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 318 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 372
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 373 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 433 LDNQILIYSTR-----------------------------------------ERFQLNKK 451
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 452 KRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 276 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNP 335
C+ T GH+ V + F DG ++ S D +I+ WD ETG I T TG +
Sbjct: 271 CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMEL 327
Query: 336 DDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDSNRRFV-TSSDD 391
D NIL++G +D + WD+ T + Q ++H AV + F N+ FV TSSDD
Sbjct: 328 KD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDD 381
Query: 392 KSLRVWEF 399
++++W+
Sbjct: 382 GTVKLWDL 389
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 28/267 (10%)
Query: 270 STFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY 329
S GKC+RT +GH+ V ++ ++ S D+ +K W+ ETG+ I T G
Sbjct: 145 SAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLY-GHTST 201
Query: 330 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
V ++ + + +++G D + WD+ T + H+ AV + + RR V+ +
Sbjct: 202 VRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA 256
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449
D ++VW+ P + H+ SL + + + SLD I ++ N
Sbjct: 257 YDFMVKVWD---PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG---N 310
Query: 450 KKKRFAGH--IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGV 504
GH + +G + N ++SG+ + WD K+ + +TL+ H+
Sbjct: 311 CIHTLTGHQSLTSGMELKDN------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 505 CIGCEWHPLEQSKVATCGWDGLIKYWD 531
+++ ++ V T DG +K WD
Sbjct: 365 VTCLQFN---KNFVITSSDDGTVKLWD 388
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 102/242 (42%), Gaps = 21/242 (8%)
Query: 290 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 349
+ FC G + ++ S D +K W TG+ +RT + + + + NI+++G +D
Sbjct: 125 LQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTL----VGHTGGVWSSQMRDNIIISGSTD 178
Query: 350 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 409
+ + W+ T E H V + +R V+ S D +LRVW+ + ++
Sbjct: 179 RTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCL-HVL 235
Query: 410 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 469
H+ ++ + + + + + D + ++ L+ GH Y+ Q
Sbjct: 236 MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT---LQGHTNRVYSLQF--- 287
Query: 470 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529
DG V+SG + WD ++ TL H+ + G E L+ + + + D +K
Sbjct: 288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME---LKDNILVSGNADSTVKI 343
Query: 530 WD 531
WD
Sbjct: 344 WD 345
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 15/225 (6%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G+C+ T GH+ VR + + ++ S D ++ WD ETGQ + G + V +
Sbjct: 189 GECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCV 245
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393
D + +++G D + WD T+ H V ++ F V+ S D S
Sbjct: 246 QYDGRR---VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS 300
Query: 394 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 453
+RVW+ I ++ H + + N L + + D+ + I+ + L +
Sbjct: 301 IRVWDVETGNCIHTLTG---HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 454 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 498
H A Q N + FV++ +G WD K+ + R L
Sbjct: 358 PNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 274 GKCMRTYMG---HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 324
G+C++T G H AV + F + +T+S D +K WD +TG+ IR T
Sbjct: 349 GQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 53/254 (20%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---------- 323
G +R++ GHS V+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD 114
Query: 324 ------------------------------------TGKIPYVVKLNPDDDKQNILLAGM 347
++ V DDD I+ AG
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG- 173
Query: 348 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 407
+DK + W++N +I ++ H +NT+T ++ D + +W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 408 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YAC 464
+S + S++ PN WLAA + I ++S ++ ++ + FAG+ A +A
Sbjct: 234 LSA--QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 290
Query: 465 QVNFSPDGRFVMSG 478
+ +S DG+ + +G
Sbjct: 291 SLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 318 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 372
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 373 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 433 LDNQILIYSTR-----------------------------------------ERFQLNKK 451
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 452 KRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 53/254 (20%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---------- 323
G +R++ GHS V+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD 114
Query: 324 ------------------------------------TGKIPYVVKLNPDDDKQNILLAGM 347
++ V DDD I+ AG
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG- 173
Query: 348 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 407
+DK + W++N +I ++ H +NT+T ++ D + +W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 408 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YAC 464
+S + S++ PN WLAA + I ++S ++ ++ + FAG+ A +A
Sbjct: 234 LSA--QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 290
Query: 465 QVNFSPDGRFVMSG 478
+ +S DG+ + +G
Sbjct: 291 SLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 318 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 372
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 373 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 433 LDNQILIYSTR-----------------------------------------ERFQLNKK 451
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 452 KRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 53/254 (20%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---------- 323
G +R++ GHS V+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD 114
Query: 324 ------------------------------------TGKIPYVVKLNPDDDKQNILLAGM 347
++ V DDD I+ AG
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG- 173
Query: 348 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 407
+DK + W++N +I ++ H +NT+T ++ D + +W +
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 408 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YAC 464
+S + S++ PN WLAA + I ++S ++ ++ + FAG+ A +A
Sbjct: 234 LSA--QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 290
Query: 465 QVNFSPDGRFVMSG 478
+ +S DG+ + +G
Sbjct: 291 SLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 318 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 372
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 373 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 433 LDNQILIYSTR-----------------------------------------ERFQLNKK 451
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 452 KRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 53/254 (20%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---------- 323
G +R++ GHS V+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 49 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD 108
Query: 324 ------------------------------------TGKIPYVVKLNPDDDKQNILLAGM 347
++ V DDD I+ AG
Sbjct: 109 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG- 167
Query: 348 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 407
+DK + W++N +I ++ H +NT+T ++ D + +W +
Sbjct: 168 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 408 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YAC 464
+S + S++ PN WLAA + I ++S ++ ++ + FAG+ A +A
Sbjct: 228 LSA--QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 284
Query: 465 QVNFSPDGRFVMSG 478
+ +S DG+ + +G
Sbjct: 285 SLAWSADGQTLFAG 298
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 318 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 372
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 373 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 120
Query: 433 LDNQILIYSTR-----------------------------------------ERFQLNKK 451
D I +++ + + + LN+
Sbjct: 121 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 452 KRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 181 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 234
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 102/254 (40%), Gaps = 53/254 (20%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---------- 323
G +R++ GHS V+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVD 114
Query: 324 ------------------------------------TGKIPYVVKLNPDDDKQNILLAGM 347
++ V DDD I+ AG
Sbjct: 115 IDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG- 173
Query: 348 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 407
+DK + W++N +I ++ H +NT+T ++ D + +W
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYT 233
Query: 408 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YAC 464
+S + S++ PN WLAA + I ++S ++ ++ + FAG+ A +A
Sbjct: 234 LSA--QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 290
Query: 465 QVNFSPDGRFVMSG 478
+ +S DG+ + +G
Sbjct: 291 SLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 19/225 (8%)
Query: 318 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 372
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 373 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVXSVDIDKKASXIISGS 126
Query: 433 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP------DGRFVMSGDGEGKCWF 486
D I +++ + + GH + QV P D ++S +
Sbjct: 127 RDKTIKVWTIKGQCL----ATLLGH--NDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 487 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
W+ ++ H P + + +A+ G DG I W+
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWN 224
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 15/239 (6%)
Query: 279 TYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYW----DTETGQVIRTFSTGKIPYVVKL 333
T H+ V I+ D + +AS DK+I W D + V + TG +V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393
D Q L+G D ++ WD+ T+ + H V ++ F NR+ V++S D++
Sbjct: 437 VLSSDGQ-FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 394 LRVWE-FG-IPVVIKYISEPHMHSMPSISLHPNT--NWLAAQSLDNQILIYSTRERFQLN 449
+++W G I E H + + PNT + + S D + +++
Sbjct: 496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS---NCK 552
Query: 450 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 508
+ AGH GY V SPDG SG +G WD K +L+ + + C
Sbjct: 553 LRSTLAGH--TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 22/232 (9%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY---- 329
G R ++GH+K V ++F D + ++AS D+ IK W+T G+ T S G +
Sbjct: 462 GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWV 520
Query: 330 -VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 388
V+ +P+ + I+ A DK + W+++ ++ H G V+T+ +
Sbjct: 521 SCVRFSPNTLQPTIVSASW-DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 389 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--------LDNQILIY 440
D + +W+ K S + ++ PN WL A + L+++ ++
Sbjct: 580 GKDGVVLLWDLAEGK--KLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVE 637
Query: 441 STRERFQLNKKKRFAGHIVAG-----YACQVNFSPDGRFVMSGDGEGKCWFW 487
+ + +K A Y +N+S DG + SG +G W
Sbjct: 638 DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 111/258 (43%), Gaps = 12/258 (4%)
Query: 278 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 337
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 338 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 397
++N ++ G D +I ++ NT E +++ H + +I + ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 398 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYS---TRERFQLNKKKR 453
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 454 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 513
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 514 EQSKVATCGWDGLIKYWD 531
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 111/258 (43%), Gaps = 12/258 (4%)
Query: 278 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 337
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 338 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 397
++N ++ G D +I ++ NT E +++ H + +I + ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 398 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYS---TRERFQLNKKKR 453
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 454 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 513
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 514 EQSKVATCGWDGLIKYWD 531
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 111/258 (43%), Gaps = 12/258 (4%)
Query: 278 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 337
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 338 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 397
++N ++ G D +I ++ NT E +++ H + +I + ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 398 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYS---TRERFQLNKKKR 453
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 454 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 513
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 514 EQSKVATCGWDGLIKYWD 531
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 31/240 (12%)
Query: 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLN 334
K + GH + + + + G K ++ S D+ ++ WD TGQ T S V ++
Sbjct: 156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 215
Query: 335 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------HLGAVNTITFVDSNRRFVT 387
P D K + AG D+ + WD T + + D H +V ++ F + V+
Sbjct: 216 PGDGK--YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273
Query: 388 SSDDKSLRVWEF-------------GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 434
S D+S+++W + YI H + S++ N ++ + S D
Sbjct: 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKD 331
Query: 435 NQILIYSTRERFQLNKKKRFAGH----IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 490
+L + + N GH I A + P+ +G G+ K W +K
Sbjct: 332 RGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 92/236 (38%), Gaps = 21/236 (8%)
Query: 287 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLA 345
+R + F DG T + D+ I+ WD E +++ + Y + P DK L++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK---LVS 182
Query: 346 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 405
G D+ + WD+ T + + G + S D+++RVW+ ++
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 406 KYISEP------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK------- 452
+ + H S+ S+ + + + SLD + +++ + + K
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302
Query: 453 --RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI 506
+ GH + V + + +++SG + FWD KS L+ H I
Sbjct: 303 EVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 462 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 521
Y V FSPDG+F+ +G + WD ++ K+ L+ HE ++ P V+
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 522 GWDGLIKYWD 531
G D ++ WD
Sbjct: 185 G-DRTVRIWD 193
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 267 EDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 316
+ K+ G C TY+GH V ++ + L+ S D+ + +WD ++G
Sbjct: 293 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 111/258 (43%), Gaps = 12/258 (4%)
Query: 278 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 337
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 338 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 397
++N ++ G D +I ++ NT E +++ H + +I + ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 398 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYS---TRERFQLNKKKR 453
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 454 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 513
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 514 EQSKVATCGWDGLIKYWD 531
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 90/217 (41%), Gaps = 22/217 (10%)
Query: 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP---Y 329
+G+C ++GH+K V ++F D + ++ D ++ W+ + G+ + T S G
Sbjct: 98 NGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVS 156
Query: 330 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
V+ +P D ++++G D + WD+ T + + H V ++T +S
Sbjct: 157 CVRFSPSLDAP-VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSD 215
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--------LDNQILIYS 441
D R+W+ + ++ + I PN W+ A + L+N+ +I
Sbjct: 216 KDGVARLWDLTKGEALSEMAAG--APINQICFSPNRYWMCAATEKGIRIFDLENKDIIVE 273
Query: 442 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 478
Q +KK + + +S DG + SG
Sbjct: 274 LAPEHQGSKK-------IVPECVSIAWSADGSTLYSG 303
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 15/208 (7%)
Query: 278 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF-STGKIPYVVKLNPD 336
R GHS V D++ N+G ++AS+D +++ W+ + GQ F K V +PD
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 337 DDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSNRRFVTSSD--DKS 393
+ + +++G D + W++ + + T H V+ + F S V S D
Sbjct: 121 NRQ---IVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 394 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 453
++VW+ ++ + + H + + S+++ P+ + A+ D ++ L K +
Sbjct: 178 VKVWDLATGRLVTDL-KGHTNYVTSVTVSPDGSLCASSDKDGVARLW------DLTKGEA 230
Query: 454 FAGHIVAGYACQVNFSPDGRFVMSGDGE 481
+ Q+ FSP+ R+ M E
Sbjct: 231 LSEMAAGAPINQICFSPN-RYWMCAATE 257
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 384 RFVTSSDDKSLRVW-----------EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432
+ V++S DK+L W +G+P E H + ++L N N+ + S
Sbjct: 30 KVVSTSRDKTLLSWGPNPDRHSSECSYGLP---DRRLEGHSAFVSDVALSNNGNFAVSAS 86
Query: 433 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS- 491
D+ + +++ + + +F GH V FSPD R ++SG + W+ K
Sbjct: 87 WDHSLRLWNLQNG---QCQYKFLGH--TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE 141
Query: 492 CKVFRTLKCHEGVCIGCEWHP-LEQSKVATCGWDGLIKYWD 531
C + H + P L+ + + GWD L+K WD
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 13/211 (6%)
Query: 281 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 340
+GH KAVR I F DG +++S D I+ W+ +TG + + + +L D
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-- 1064
Query: 341 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 400
LL+ D + W++ T I +++ H G V + +F ++S DK+ ++W F
Sbjct: 1065 --LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
Query: 401 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK------KKRF 454
+ + + + H + + + LA + +I I++ + L+ ++
Sbjct: 1123 LLSPLHEL-KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1181
Query: 455 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 485
A H G+ V FSPD + ++S G K W
Sbjct: 1182 ATH--GGWVTDVCFSPDSKTLVSAGGYLKWW 1210
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 8/177 (4%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 342
H+ AV F DG + + DK ++ + ETG+ + + + DD +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD--SY 678
Query: 343 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV--TSSDDKSLRVWEFG 400
+ +DKK+ WD T ++ YD+H VN F + + + T S+D L++W+
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 401 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKKRF 454
+ H +S+ P+ LA+ S D + ++ R ER +N K+ F
Sbjct: 739 QKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G+ + H V +F +D + T S DK +K WD+ TG+++ T+
Sbjct: 654 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH 713
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393
+ +L G +D + WD+N KE H +VN F + + S D +
Sbjct: 714 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 773
Query: 394 LRVWE 398
LR+W+
Sbjct: 774 LRLWD 778
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/287 (19%), Positives = 118/287 (41%), Gaps = 58/287 (20%)
Query: 287 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILL 344
V+ S+ DG K + A+ +K + +D T ++ TG + +P D ++ +
Sbjct: 808 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD---HLAV 863
Query: 345 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF----- 399
+S + W+++++ + HL V+ + F F+T+SDD+++RVWE
Sbjct: 864 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 923
Query: 400 ----------------------------GIPVV------IKYISEPHMHSMPSISLHPNT 425
G+ ++ I Y+ E + L P+
Sbjct: 924 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHL 980
Query: 426 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDGEGKC 484
++A D I I +L + F+ + A + + F+ DG+ ++S +
Sbjct: 981 EYVAFGDEDGAIKI------IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVI 1034
Query: 485 WFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
W+W++ + L+ H+ ++ L+ S++ + +DG +K W+
Sbjct: 1035 QVWNWQTGD-YVFLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWN 1078
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 105/289 (36%), Gaps = 52/289 (17%)
Query: 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-------------------------- 315
GH V + F DG+ FLTAS D+ I+ W+T+
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 316 -----GQVIRTFSTGKIPYVVKLNPDDDKQNILLA--------GMSDKKIVQWDMNTKEI 362
G + TG+I Y+ P+ L+ G D I ++ +
Sbjct: 947 VDNIRGLQLIAGKTGQIDYL----PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 1002
Query: 363 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 422
H AV I F + ++SS+D ++VW + + + H ++ L
Sbjct: 1003 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKDFRLL 1060
Query: 423 PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 482
++ L + S D + +++ ++ F H +C ++ S D
Sbjct: 1061 QDSRLL-SWSFDGTVKVWNV---ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1116
Query: 483 KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
K W +D S LK H G C+ C L+ +AT +G I+ W+
Sbjct: 1117 KIWSFDLLS--PLHELKGHNG-CVRCSAFSLDGILLATGDDNGEIRIWN 1162
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 462 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 521
+AC FS DG+ + S + + ++ + +K HE + C + + S +ATC
Sbjct: 627 HAC---FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATC 682
Query: 522 GWDGLIKYWD 531
D +K WD
Sbjct: 683 SADKKVKIWD 692
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 369 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 428
H AV F +R + DK+L+V++ + I + H + + + +++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYI 679
Query: 429 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY--------ACQVNFSPDGRFVMSGDG 480
A S D ++ I+ + G +V Y C + + +G
Sbjct: 680 ATCSADKKVKIWDSA-----------TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 481 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
+ WD + T+ H C + P + +A+C DG ++ WD
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWD 778
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 311
G+ R + H V + +D TKF + S DK K W
Sbjct: 1082 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 13/211 (6%)
Query: 281 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 340
+GH KAVR I F DG +++S D I+ W+ +TG + + + +L D
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-- 1057
Query: 341 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 400
LL+ D + W++ T I +++ H G V + +F ++S DK+ ++W F
Sbjct: 1058 --LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
Query: 401 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK------KKRF 454
+ + + + H + + + LA + +I I++ + L+ ++
Sbjct: 1116 LLSPLHEL-KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174
Query: 455 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 485
A H G+ V FSPD + ++S G K W
Sbjct: 1175 ATH--GGWVTDVCFSPDSKTLVSAGGYLKWW 1203
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 8/177 (4%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 342
H+ AV F DG + + DK ++ + ETG+ + + + DD +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD--SY 671
Query: 343 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV--TSSDDKSLRVWEFG 400
+ +DKK+ WD T ++ YD+H VN F + + + T S+D L++W+
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 401 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKKRF 454
+ H +S+ P+ LA+ S D + ++ R ER +N K+ F
Sbjct: 732 QKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G+ + H V +F +D + T S DK +K WD+ TG+++ T+
Sbjct: 647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH 706
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393
+ +L G +D + WD+N KE H +VN F + + S D +
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766
Query: 394 LRVWE 398
LR+W+
Sbjct: 767 LRLWD 771
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/287 (19%), Positives = 118/287 (41%), Gaps = 58/287 (20%)
Query: 287 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILL 344
V+ S+ DG K + A+ +K + +D T ++ TG + +P D ++ +
Sbjct: 801 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD---HLAV 856
Query: 345 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF----- 399
+S + W+++++ + HL V+ + F F+T+SDD+++RVWE
Sbjct: 857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916
Query: 400 ----------------------------GIPVV------IKYISEPHMHSMPSISLHPNT 425
G+ ++ I Y+ E + L P+
Sbjct: 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHL 973
Query: 426 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDGEGKC 484
++A D I I +L + F+ + A + + F+ DG+ ++S +
Sbjct: 974 EYVAFGDEDGAIKI------IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVI 1027
Query: 485 WFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
W+W++ + L+ H+ ++ L+ S++ + +DG +K W+
Sbjct: 1028 QVWNWQTGD-YVFLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWN 1071
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 105/289 (36%), Gaps = 52/289 (17%)
Query: 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-------------------------- 315
GH V + F DG+ FLTAS D+ I+ W+T+
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 316 -----GQVIRTFSTGKIPYVVKLNPDDDKQNILLA--------GMSDKKIVQWDMNTKEI 362
G + TG+I Y+ P+ L+ G D I ++ +
Sbjct: 940 VDNIRGLQLIAGKTGQIDYL----PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995
Query: 363 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 422
H AV I F + ++SS+D ++VW + + + H ++ L
Sbjct: 996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKDFRLL 1053
Query: 423 PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 482
++ L + S D + +++ ++ F H +C ++ S D
Sbjct: 1054 QDSRLL-SWSFDGTVKVWNV---ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1109
Query: 483 KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
K W +D S LK H G C+ C L+ +AT +G I+ W+
Sbjct: 1110 KIWSFDLLS--PLHELKGHNG-CVRCSAFSLDGILLATGDDNGEIRIWN 1155
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 462 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 521
+AC FS DG+ + S + + ++ + +K HE + C + + S +ATC
Sbjct: 620 HAC---FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATC 675
Query: 522 GWDGLIKYWD 531
D +K WD
Sbjct: 676 SADKKVKIWD 685
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 369 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 428
H AV F +R + DK+L+V++ + I + H + + + +++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYI 672
Query: 429 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY--------ACQVNFSPDGRFVMSGDG 480
A S D ++ I+ + G +V Y C + + +G
Sbjct: 673 ATCSADKKVKIWDSA-----------TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 481 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
+ WD + T+ H C + P + +A+C DG ++ WD
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWD 771
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 311
G+ R + H V + +D TKF + S DK K W
Sbjct: 1075 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 7/207 (3%)
Query: 325 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 384
G Y+ DD Q + +G D WD+ T + T + H G V +++ R
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 385 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444
FV+ + D S ++W+ + + + H + +I PN N A S D ++ R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 445 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504
+L +I+ G V+FS GR +++G + C WD L H+
Sbjct: 258 DQELMTYSH--DNIICGIT-SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 505 CIGCEWHPLEQSKVATCGWDGLIKYWD 531
+ C + VAT WD +K W+
Sbjct: 315 -VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 47/124 (37%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G C +T+ GH + I F +G F T S D + +D Q + T+S I +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393
+LLAG D WD + H V+ + D T S D
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 394 LRVW 397
L++W
Sbjct: 336 LKIW 339
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQN 341
H+ V +S D F++ + D + K WD G +TF+ + + P+ N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN---GN 239
Query: 342 ILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 398
G D +D+ + +T +D + + +++F S R + DD + VW+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 7/207 (3%)
Query: 325 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 384
G Y+ DD Q + +G D WD+ T + T + H G V +++ R
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 385 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444
FV+ + D S ++W+ + + + H + +I PN N A S D ++ R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 445 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504
+L +I+ G V+FS GR +++G + C WD L H+
Sbjct: 258 DQELMTYSH--DNIICGIT-SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 505 CIGCEWHPLEQSKVATCGWDGLIKYWD 531
+ C + VAT WD +K W+
Sbjct: 315 -VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 47/124 (37%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G C +T+ GH + I F +G F T S D + +D Q + T+S I +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393
+LLAG D WD + H V+ + D T S D
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 394 LRVW 397
L++W
Sbjct: 336 LKIW 339
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQN 341
H+ V +S D F++ + D + K WD G +TF+ + + P+ N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN---GN 239
Query: 342 ILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 398
G D +D+ + +T +D + + +++F S R + DD + VW+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 7/207 (3%)
Query: 325 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 384
G Y+ DD Q + +G D WD+ T + T + H G V +++ R
Sbjct: 152 GHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 209
Query: 385 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444
FV+ + D S ++W+ + + + H + +I PN N A S D ++ R
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Query: 445 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504
+L +I+ G V+FS GR +++G + C WD L H+
Sbjct: 269 DQELMTYSH--DNIICGIT-SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 325
Query: 505 CIGCEWHPLEQSKVATCGWDGLIKYWD 531
+ C + VAT WD +K W+
Sbjct: 326 -VSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 47/124 (37%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G C +T+ GH + I F +G F T S D + +D Q + T+S I +
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 286
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393
+LLAG D WD + H V+ + D T S D
Sbjct: 287 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 346
Query: 394 LRVW 397
L++W
Sbjct: 347 LKIW 350
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQN 341
H+ V +S D F++ + D + K WD G +TF+ + + P+ N
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN---GN 250
Query: 342 ILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 398
G D +D+ + +T +D + + +++F S R + DD + VW+
Sbjct: 251 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 7/207 (3%)
Query: 325 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 384
G Y+ DD Q + +G D WD+ T + T + H G V +++ R
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 385 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444
FV+ + D S ++W+ + + + H + +I PN N A S D ++ R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 445 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504
+L +I+ G V+FS GR +++G + C WD L H+
Sbjct: 258 DQELMTYSH--DNIICGIT-SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 505 CIGCEWHPLEQSKVATCGWDGLIKYWD 531
+ C + VAT WD +K W+
Sbjct: 315 -VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 47/124 (37%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G C +T+ GH + I F +G F T S D + +D Q + T+S I +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393
+LLAG D WD + H V+ + D T S D
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 394 LRVW 397
L++W
Sbjct: 336 LKIW 339
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQN 341
H+ V +S D F++ + D + K WD G +TF+ + + P+ N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN---GN 239
Query: 342 ILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 398
G D +D+ + +T +D + + +++F S R + DD + VW+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 112/272 (41%), Gaps = 23/272 (8%)
Query: 271 TFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 330
T +G R GHS V D+ +DG L+ S+D ++ WD TG R F G V
Sbjct: 73 TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDV 131
Query: 331 VKLNPDDDKQNILLAGMSDKKIVQWD-MNTKEITQEYDQHLGAVNTITFV--DSNRRFVT 387
+ + D + I ++G DK I W+ + + T + + H V+ + F SN V+
Sbjct: 132 LSVAFSSDNRQI-VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 388 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 447
DK ++VW +K H + ++++ P+ + A+ D Q +++ E
Sbjct: 191 CGWDKLVKVWNLA-NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249
Query: 448 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--------EGKCWFWDWKSCKVFRTLK 499
L G + C FSP+ ++ + G EGK + K + + K
Sbjct: 250 L---YTLDGGDIINALC---FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSK 303
Query: 500 CHEGVCIGCEWHPLEQSKVATCGW-DGLIKYW 530
C W Q+ A G+ D L++ W
Sbjct: 304 AEPPQCTSLAWSADGQTLFA--GYTDNLVRVW 333
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 17/156 (10%)
Query: 385 FVTSSDDKSLRVWE-------FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 437
+++S DK++ +W+ +GIP + H H + + + + + + S D +
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIP---QRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110
Query: 438 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKSCKVFR 496
++ + +RF GH V FS D R ++SG + W+ CK
Sbjct: 111 RLW---DLTTGTTTRRFVGH--TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165
Query: 497 TLKCHEGVCIGCEWHPLEQSKV-ATCGWDGLIKYWD 531
+ H + P + + +CGWD L+K W+
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 7/207 (3%)
Query: 325 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 384
G Y+ DD Q + +G D WD+ T + T + H G V +++ R
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 385 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444
FV+ + D S ++W+ + + + H + +I PN N A S D ++ R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 445 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504
+L +I+ G V+FS GR +++G + C WD L H+
Sbjct: 258 DQELMTYSH--DNIICGIT-SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 505 CIGCEWHPLEQSKVATCGWDGLIKYWD 531
+ C + VAT WD +K W+
Sbjct: 315 -VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 47/124 (37%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G C +T+ GH + I F +G F T S D + +D Q + T+S I +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393
+LLAG D WD + H V+ + D T S D
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 394 LRVW 397
L++W
Sbjct: 336 LKIW 339
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQN 341
H+ V +S D F++ + D + K WD G +TF+ + + P+ N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN---GN 239
Query: 342 ILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 398
G D +D+ + +T +D + + +++F S R + DD + VW+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
Query: 271 TFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 330
T +G R GHS V D+ +DG L+ S+D ++ WD TG R F G V
Sbjct: 50 TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDV 108
Query: 331 VKLNPDDDKQNILLAGMSDKKIVQWD-MNTKEITQEYDQHLGAVNTITFV--DSNRRFVT 387
+ + D + I ++G DK I W+ + + T + + H V+ + F SN V+
Sbjct: 109 LSVAFSSDNRQI-VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 388 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 447
DK ++VW +K H + ++++ P+ + A+ D Q +++ E
Sbjct: 168 CGWDKLVKVWNLA-NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 226
Query: 448 L 448
L
Sbjct: 227 L 227
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 17/156 (10%)
Query: 385 FVTSSDDKSLRVWE-------FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 437
+++S DK++ +W+ +GIP + H H + + + + + + S D +
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIP---QRALRGHSHFVSDVVISSDGQFALSGSWDGTL 87
Query: 438 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKSCKVFR 496
++ + +RF GH V FS D R ++SG + W+ CK
Sbjct: 88 RLW---DLTTGTTTRRFVGH--TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 142
Query: 497 TLKCHEGVCIGCEWHPLEQSKV-ATCGWDGLIKYWD 531
+ H + P + + +CGWD L+K W+
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 118/264 (44%), Gaps = 32/264 (12%)
Query: 267 EDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK 326
E+++ + G + GH+ V D++ + +++S+DK ++ WD TG + F +
Sbjct: 59 EEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ 118
Query: 327 IP-YVVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQEYDQHLGAVNTITFV---- 379
Y V +PD+ + IL AG ++++I W++ K + E + H V+ + +
Sbjct: 119 SEVYSVAFSPDN--RQILSAG-AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 380 DSNR------RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 433
+N+ F + D L+VW I+Y + H ++ +S+ PN ++A
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNTNFQ--IRYTFKAHESNVNHLSISPNGKYIATGGK 233
Query: 434 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 493
D ++LI+ +++ AG + Q+ F+P ++V G +G K
Sbjct: 234 DKKLLIWDIL-NLTYPQREFDAGSTIN----QIAFNPKLQWVAVGTDQG---------VK 279
Query: 494 VFRTLKCHEGVCIGCEWHPLEQSK 517
+F + + E P+ +++
Sbjct: 280 IFNLMTQSKAPVCTIEAEPITKAE 303
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 385 FVTSSDDKSLRVWE---------FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 435
++ S DK++ +W+ FGIP H H + ++L + + S D
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIP---HKALTGHNHFVSDLALSQENCFAISSSWDK 98
Query: 436 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKSCKV 494
+ ++ R KRF GH Y+ V FSPD R ++S E + W+ CK
Sbjct: 99 TLRLWDLRTG---TTYKRFVGHQSEVYS--VAFSPDNRQILSAGAEREIKLWNILGECKF 153
Query: 495 FRTLKCHEGVCIGC-EWHPLEQSK---------VATCGWDGLIKYWD 531
K + + C + P+ +S A+ GWDG +K W+
Sbjct: 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 8/177 (4%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 342
H+ AV F DG + + DK ++ + ETG+ + + + DD+
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR--F 677
Query: 343 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV--TSSDDKSLRVWEFG 400
+ DKK+ W+ T E+ YD+H VN F +S+ + T S D L++W+
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 401 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY---STRERFQLNKKKRF 454
+ H +S+ P+ LA+ S D + ++ S ER +N K+ F
Sbjct: 738 QKEC-RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 50/288 (17%)
Query: 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDT-------------------ETGQV---- 318
GH V + F DG+ FLT+S D+ I+ W+T + +V
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 319 ---IRTFS-----TGKIPYVVK-------LNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 363
IR TG+I Y+ + L+P + G + I ++ I
Sbjct: 946 VDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP---HLQYIAFGDENGAIEILELVNNRIF 1002
Query: 364 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 423
Q QH V I F + ++SSDD ++VW + + I H ++ L
Sbjct: 1003 QSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FLRGHQETVKDFRLLK 1060
Query: 424 NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 483
N+ L + S D + +++ NK+K F H +C ++ S D K
Sbjct: 1061 NSR-LLSWSFDGTVKVWNI---ITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAK 1116
Query: 484 CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
W +D L+ H G C+ C ++ + +AT +G I+ W+
Sbjct: 1117 IWSFDL--LLPLHELRGHNG-CVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G+ + H V +F D T S DK +K W++ TG+++ T+ V
Sbjct: 653 GEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHS-EQVNCC 711
Query: 334 NPDDDKQNILLA-GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK 392
+ + ++LLA G SD + WD+N KE H +VN F ++ + S D
Sbjct: 712 HFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADG 771
Query: 393 SLRVWE 398
+L++W+
Sbjct: 772 TLKLWD 777
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)
Query: 266 VEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 325
+E + + ++ H K V I F D +++S D I+ W+ + + I F G
Sbjct: 991 IEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FLRG 1048
Query: 326 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 385
V K + LL+ D + W++ T +++ H G V + +F
Sbjct: 1049 HQETVKDFRLL--KNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKF 1106
Query: 386 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY--STR 443
++S DK+ ++W F + + + + H + + ++ LA + +I I+ S
Sbjct: 1107 SSTSADKTAKIWSFDLLLPLHEL-RGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNG 1165
Query: 444 ERFQLNKKKRFAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCW 485
E L G G+ + FSPDG+ ++S G K W
Sbjct: 1166 ELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWW 1208
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 287 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG---KIPYVVKLNPDDDKQNIL 343
V+ S+ DG + + A+ +K I +D T ++ TG I Y D QN L
Sbjct: 807 VKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYC-----DFSPQNHL 860
Query: 344 -LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 398
+ +S + W+ +++ + HL V+ + F F+TSSDD+++R+WE
Sbjct: 861 AVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 21/171 (12%)
Query: 369 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 428
H AV F + +R + DK+L+V++ + I + H + + + ++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI-KAHEDEVLCCAFSTDDRFI 678
Query: 429 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY---ACQVN---FSPDGRFVMSGDGEG 482
A S+D ++ I+++ G +V Y + QVN F+ ++ G
Sbjct: 679 ATCSVDKKVKIWNS-----------MTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSS 727
Query: 483 KCWF--WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
C+ WD + T+ H C + P + +A+C DG +K WD
Sbjct: 728 DCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWD 777
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 13/191 (6%)
Query: 274 GKCMRTYMGHSKAVRD---ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 330
G + H+ +V D +SF + KFLTAS DK IK W + +VI+TFS V
Sbjct: 132 GSLVYNLQAHNASVWDAKVVSFSEN--KFLTASADKTIKLWQND--KVIKTFSGIHNDVV 187
Query: 331 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 390
L DD ++ +D I D +T ++ + Y+ H V I + N V+ +
Sbjct: 188 RHLAVVDDGH--FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLL-PNGDIVSCGE 244
Query: 391 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 450
D+++R+W + + I+ P + S+ S+ N + + S DN + I+S +E+ +
Sbjct: 245 DRTVRIWSKENGSLKQVITLPAI-SIWSVDCXSNGDIIVGSS-DNLVRIFS-QEKSRWAS 301
Query: 451 KKRFAGHIVAG 461
+ G + +G
Sbjct: 302 EDEIKGELRSG 312
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 12/176 (6%)
Query: 278 RTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPD 336
RT+ VRD+ F D +F +T D+ I +D ++G+ ++ + P +
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 337 D--DKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDSNRRFVTSSDD 391
D Q G +D I WD+ T + Q++ Q LG N R ++ S D
Sbjct: 260 SWLDSQKFATVG-ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318
Query: 392 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 447
+L +E G V+K IS H + +++++P L + S D +I+ +S+ Q
Sbjct: 319 GTLNFYELGHDEVLKTIS-GHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 369
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 99/251 (39%), Gaps = 11/251 (4%)
Query: 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQ 340
GH V + + ++S D +I+ WD E G+ I++ G + + + +PD
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD---S 134
Query: 341 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 400
L G K+ + + + + D + +I + + + + D + +++
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 401 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 460
++ + E H + S++ P++ L S D I IY + N +GH A
Sbjct: 195 TGKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGH--A 248
Query: 461 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 520
+ V F PD +S + WD + T H+ G +++ SK+ +
Sbjct: 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVS 307
Query: 521 CGWDGLIKYWD 531
G D I +D
Sbjct: 308 VGDDQEIHIYD 318
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--V 331
GK + T GH+ +R ++F D +TAS D IK +D + + T S G +V V
Sbjct: 196 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNV 254
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 391
PDD ++ SDK + WD+ T+ + H V + + + + V+ DD
Sbjct: 255 AFCPDDTH---FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311
Query: 392 KSLRVWE 398
+ + +++
Sbjct: 312 QEIHIYD 318
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 90/202 (44%), Gaps = 14/202 (6%)
Query: 334 NPDDDKQNILLAGMSD-KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK 392
N ++ + ++ + D K+ +W ++ + H V ++ + +SS D
Sbjct: 43 NKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102
Query: 393 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY---STRERFQLN 449
+R+W+ IK I + + +++ P++ +LA + ++ I+ S ++ + L+
Sbjct: 103 HIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 450 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 509
+ +F + +SPDG+++ SG +G +D + K+ TL+ H
Sbjct: 162 TRGKFI--------LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213
Query: 510 WHPLEQSKVATCGWDGLIKYWD 531
+ P Q V T DG IK +D
Sbjct: 214 FSPDSQLLV-TASDDGYIKIYD 234
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 322
H T GH+ V +++FC D T F+++S DK++K WD T + TF
Sbjct: 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 278 RTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPD 336
RT+ VRD+ F D +F +T D+ I +D ++G+ ++ + P +
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 337 D--DKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDSNRRFVTSSDD 391
D Q G +D I WD+ T + Q++ Q LG N R ++ S D
Sbjct: 260 SWLDSQKFATVG-ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318
Query: 392 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 437
+L +E G V+K IS H + +++++P L + S D +I
Sbjct: 319 GTLNFYELGHDEVLKTIS-GHNKGITALTVNP----LISGSYDGRI 359
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G RT +GH V DI+ + G L+AS D I+ W+ TG I TF+ K
Sbjct: 168 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR-------KE 220
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTK 360
NP D +I L +D+++ + + K
Sbjct: 221 NPHDGVNSIALFVGTDRQLHEISTSKK 247
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G RT +GH V DI+ + G L+AS D I+ W+ TG I TF+ K
Sbjct: 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR-------KE 223
Query: 334 NPDDDKQNILLAGMSDKKIVQWDMNTK 360
NP D +I L +D+++ + + K
Sbjct: 224 NPHDGVNSIALFVGTDRQLHEISTSKK 250
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 6/183 (3%)
Query: 344 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-DSNRRFVTSSDDKSLRVWEFGIP 402
++G D + WD++ K + + Y+ H VN + + F++ +D + +W+ P
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 403 VVIKYISEPHMHSMP-SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 461
I ++P S++ HP + A + + + + + G
Sbjct: 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274
Query: 462 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 521
A + SP F+ S + D +VFR L H G W PL+ SK T
Sbjct: 275 LAYSYHSSP---FLASISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAWSPLDHSKFTTV 330
Query: 522 GWD 524
GWD
Sbjct: 331 GWD 333
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQN 341
H V+ +S +DGT+ ++ D ++K WD V+++++ V P K
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP--GKDT 195
Query: 342 ILLAGMSDKKIVQWD 356
I L+ D +I+ WD
Sbjct: 196 IFLSCGEDGRILLWD 210
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 384 RFVTSSDDKSLRVWEF------GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ- 436
+++SDD ++ +W+ G V K I H + +S H L D+Q
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 437 ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWKSC 492
++I+ TR N K H V + +VN F+P F++ +G + WD ++
Sbjct: 252 LMIWDTRSN---NTSK--PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
Query: 493 KV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 19/186 (10%)
Query: 280 YMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPD 336
+ GH+ V D+S+ + F + + D+ + WDT + + + V L+ +
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 337 DDKQNILLAGMSDKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSL 394
+ IL G +DK + WD+ N K ++ H + + + N + SS D+ L
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 395 RVWEFGI-------------PVVIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIY 440
VW+ P + +I H + S +PN W + + S DN + ++
Sbjct: 343 NVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Query: 441 STRERF 446
E
Sbjct: 403 QMAENI 408
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 382 NRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 435
N +++SDD ++ +W+ + K I H + ++ H L D+
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 436 Q-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWK 490
Q ++I+ TR N H V + +VN F+P F++ +G + WD +
Sbjct: 254 QKLMIWDTR-----NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
Query: 491 SCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
+ K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 18/177 (10%)
Query: 280 YMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPD 336
+ GH+ V D+++ + F + + D+ + WDT + T V L+ +
Sbjct: 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 337 DDKQNILLAGMSDKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSL 394
+ IL G +DK + WD+ N K ++ H + + + N + SS D+ L
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346
Query: 395 RVWEFGI-------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 438
VW+ P + +I H + S +PN W+ ++ I+
Sbjct: 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 382 NRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 435
N +++SDD ++ +W+ + K I H + ++ H L D+
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 436 Q-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWK 490
Q ++I+ TR N H V + +VN F+P F++ +G + WD +
Sbjct: 256 QKLMIWDTR-----NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
Query: 491 SCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
+ K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 311 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 18/177 (10%)
Query: 280 YMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPD 336
+ GH+ V D+++ + F + + D+ + WDT + T V L+ +
Sbjct: 229 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 337 DDKQNILLAGMSDKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSL 394
+ IL G +DK + WD+ N K ++ H + + + N + SS D+ L
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348
Query: 395 RVWEFGI-------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 438
VW+ P + +I H + S +PN W+ ++ I+
Sbjct: 349 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 382 NRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 435
N +++SDD ++ +W+ + K I H + ++ H L D+
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 436 Q-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWK 490
Q ++I+ TR N H V + +VN F+P F++ +G + WD +
Sbjct: 258 QKLMIWDTR-----NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
Query: 491 SCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
+ K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 313 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 18/177 (10%)
Query: 280 YMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPD 336
+ GH+ V D+++ + F + + D+ + WDT + T V L+ +
Sbjct: 231 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 337 DDKQNILLAGMSDKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSL 394
+ IL G +DK + WD+ N K ++ H + + + N + SS D+ L
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Query: 395 RVWEFGI-------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 438
VW+ P + +I H + S +PN W+ ++ I+
Sbjct: 351 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-----TGKIPY 329
+C+ T GH V+ +++ G T S DK++ W+ + S T + +
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155
Query: 330 VVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 387
VV +P Q +L + D K+ + + + + H V ++ F S +R +
Sbjct: 156 VV-WHP---SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211
Query: 388 SSDDKSLRVWEFGIP 402
SDD+++R+W +P
Sbjct: 212 CSDDRTVRIWRQYLP 226
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 385 FVTSSDDKSLRVW--EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 442
+ D+ +R+W E + +SE H ++ ++ P N+LA+ S D I+
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK- 89
Query: 443 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 488
+ + GH V ++P G + + + W W+
Sbjct: 90 KNQDDFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 384 RFVTSSDDKSLRVWEF------GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ- 436
+++SDD ++ +W+ G V K I H + ++ H L D+Q
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 437 ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWKSC 492
++I+ TR + H+V + +VN F+P F++ +G + WD ++
Sbjct: 254 LMIWDTR-----SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 493 KV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
K+ T + H+ W P ++ +A+ G D + WD
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 31/192 (16%)
Query: 280 YMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK------ 332
+ GHS V D+++ + F + + D+ + WDT R+ +T K ++V
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT------RSNTTSKPSHLVDAHTAEV 278
Query: 333 --LNPDDDKQNILLAGMSDKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
L+ + + IL G +DK + WD+ N K ++ H + + + N + SS
Sbjct: 279 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS 338
Query: 390 -DDKSLRVWEFGI-------------PVVIKYISEPHMHSMPSISLHPNTNW-LAAQSLD 434
D+ L VW+ P + +I H + S +PN W + + S D
Sbjct: 339 GTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398
Query: 435 NQILIYSTRERF 446
N + I+ E
Sbjct: 399 NIMQIWQMAENI 410
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 447 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW----KSCKVF---RTLK 499
+ N R GH GY N + G + + D C WD K K+
Sbjct: 168 ECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAIFT 226
Query: 500 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
H V WH L +S + D + WD
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWD 258
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 15/148 (10%)
Query: 282 GHSKAVRDISFC--NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY--------VV 331
GH+ V DI++C ND + S D + W+ G ++ I +V
Sbjct: 79 GHTAPVLDIAWCPHNDNV-IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSS 389
+P QN+LL+ D I+ WD+ T +T D H + ++ + TS
Sbjct: 138 AWHPT--AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMP 417
DK +RV E V+ PH + P
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRP 223
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 20/171 (11%)
Query: 277 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI-------RTFSTGKIPY 329
+R + GH+ I NDGTK T D ++ WD G+ + + FS G P
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP- 234
Query: 330 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
L GM + +N + Q + H V ++ F + FV++
Sbjct: 235 ---------TGEWLAVGMESSNVEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWFVSTG 284
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 440
D L W P S+ S + + ++ S D + +Y
Sbjct: 285 KDNLLNAWR--TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLN 334
KC+ GH+ + + ++ + ++AS D I+ WD E G+++ T G V L
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLR 359
Query: 335 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI-TFVDSNRRFVTSSDDK 392
D L++ +D I WD N + ++++ H ++ I TF S+ V+ S+++
Sbjct: 360 LSD---KFLVSAAADGSIRGWDAN--DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ 413
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 274 GKCMRTYMGHSKAVR--DISFCNDGTKFLTASYDKNIKYWDTETGQVI----------RT 321
G C + GH+ VR DI + +T S D + W +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 322 FST-GKIPYVV--------KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA 372
F T + PY V + NI+++G D ++ WD+ + H
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312
Query: 373 VNTITFVDSNRRFVTSSDDKSLRVWEF 399
+ + + +R +++S D ++R+W+
Sbjct: 313 IYSTIYDHERKRCISASMDTTIRIWDL 339
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 384 RFVTSSDDKSLRVWEF------GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 437
+++SDD ++ +W+ G V K I H + ++ H L D+Q
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 438 L-IYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWKSC 492
L I+ TR + H+V + +VN F+P F++ +G + WD ++
Sbjct: 254 LXIWDTR-----SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 493 KV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
K+ T + H+ W P ++ +A+ G D + WD
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 31/192 (16%)
Query: 280 YMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK------ 332
+ GHS V D+++ + F + + D+ + WDT R+ +T K ++V
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT------RSNTTSKPSHLVDAHTAEV 278
Query: 333 --LNPDDDKQNILLAGMSDKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
L+ + + IL G +DK + WD+ N K ++ H + + + N + SS
Sbjct: 279 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS 338
Query: 390 -DDKSLRVWEFGI-------------PVVIKYISEPHMHSMPSISLHPNTNW-LAAQSLD 434
D+ L VW+ P + +I H + S +PN W + + S D
Sbjct: 339 GTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398
Query: 435 NQILIYSTRERF 446
N I+ E
Sbjct: 399 NIXQIWQXAENI 410
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 447 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW----KSCKVF---RTLK 499
+ N R GH GY N + G + + D C WD K K+
Sbjct: 168 ECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAIFT 226
Query: 500 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
H V WH L +S + D + WD
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWD 258
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLN 334
KC+ GH+ + + ++ + ++AS D I+ WD E G++ T G V L
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQ-GHTALVGLLR 359
Query: 335 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI-TFVDSNRRFVTSSDDK 392
D L++ +D I WD N + ++++ H ++ I TF S+ V+ S+++
Sbjct: 360 LSD---KFLVSAAADGSIRGWDAN--DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ 413
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 274 GKCMRTYMGHSKAVR--DISFCNDGTKFLTASYDKNIKYWDTETGQVI----------RT 321
G C + GH+ VR DI + +T S D + W +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 322 FST-GKIPYVV--------KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA 372
F T + PY V + NI+++G D ++ WD+ + H
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
Query: 373 VNTITFVDSNRRFVTSSDDKSLRVWEF 399
+ + + +R +++S D ++R+W+
Sbjct: 313 IYSTIYDHERKRCISASXDTTIRIWDL 339
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 22/205 (10%)
Query: 307 NIKYWDT-ETGQVIRTFSTGKIPY----VVKLNPDDDKQNILLAGMSDKK---IVQWDMN 358
N++ WDT +T +++T IP V ++ D + + I G ++ + +D
Sbjct: 82 NVRIWDTTQTTHILKT----TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 137
Query: 359 TKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 417
T A+N++ F S R ++ SDD ++ ++E G P K H +
Sbjct: 138 TSN--GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE-GPPFKFKSTFGEHTKFVH 194
Query: 418 SISLHPNTNWLAAQSLDNQILIYS----TRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 473
S+ +P+ + A+ D I++Y+ T+ + + H +G + +SPDG
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH--SGSVFGLTWSPDGT 252
Query: 474 FVMSGDGEGKCWFWDWKSCKVFRTL 498
+ S + W+ + KV +T+
Sbjct: 253 KIASASADKTIKIWNVATLKVEKTI 277
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/300 (19%), Positives = 111/300 (37%), Gaps = 47/300 (15%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333
G + GH+KA+ +S DG +A + +I WD TG R F + +
Sbjct: 314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373
Query: 334 NPD----------DDKQNILLAGMS---DKKIVQWDMNTK----EITQEYDQHLGAV--- 373
DD ++ AG S K V ++++ ++ + D + A
Sbjct: 374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 433
Query: 374 -----------------NTITFVDSNRRFV-TSSDDKSLRVWEFGIPVVIKYISEPHMHS 415
++ + ++++FV D + V++ V + + H
Sbjct: 434 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 493
Query: 416 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 475
+ S++ N +L A +++ YS F+L + H A AC V++SPD +
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKVAC-VSWSPDNVRL 551
Query: 476 MSGDGEGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
+G + W+ + + V W L ++ + + G D IK+W+
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN-SVIW--LNETTIVSAGQDSNIKFWN 608
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 281 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 325
+ HS +V +++ DGTK +AS DK IK W+ T +V +T G
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 12/139 (8%)
Query: 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYV 330
G + H + + + DGT ++ + W+ +G V++ F TG
Sbjct: 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198
Query: 331 VKLNPDDDKQNILLAGMSDKKIV---------QWDMNTKEITQEYDQHLGAVNTITFVDS 381
+ + D + + + D K V + + K T + H G ++ + F D+
Sbjct: 199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258
Query: 382 NRRFVTSSDDKSLRVWEFG 400
N+ +++SDD +LR+W G
Sbjct: 259 NKLLLSASDDGTLRIWHGG 277
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 294 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIV 353
+D F ++S+DK +K WDT T Q F+ + Y ++P K ++ G K+
Sbjct: 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169
Query: 354 QWDMNT---KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 398
D+ + I Q + Q + AV+ D T+S D +++W+
Sbjct: 170 LCDLKSGSCSHILQGHRQEILAVSWSPRYD--YILATASADSRVKLWD 215
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 275 KCMRTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVV 331
+C++ Y+GH A+ ++ F D L+ S D ++ W+ +T ++ F G V+
Sbjct: 101 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 160
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYD 367
+ D + I+ GM D + W +N+K I + YD
Sbjct: 161 SADYDLLGEKIMSCGM-DHSLKLWRINSKRMMNAIKESYD 199
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 275 KCMRTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVV 331
+C++ Y+GH A+ ++ F D L+ S D ++ W+ +T ++ F G V+
Sbjct: 142 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 201
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYDQHLGAVN 374
+ D + I+ GM D + W +N+K I + YD + N
Sbjct: 202 SADYDLLGEKIMSCGM-DHSLKLWRINSKRMMNAIKESYDYNPNKTN 247
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 275 KCMRTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVV 331
+C++ Y+GH A+ ++ F D L+ S D ++ W+ +T ++ F G V+
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYD 367
+ D + I+ GM D + W +N+K I + YD
Sbjct: 165 SADYDLLGEKIMSCGM-DHSLKLWRINSKRMMNAIKESYD 203
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 275 KCMRTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVV 331
+C++ Y+GH A+ ++ F D L+ S D ++ W+ +T ++ F G V+
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYD 367
+ D + I+ GM D + W +N+K I + YD
Sbjct: 165 SADYDLLGEKIMSCGM-DHSLKLWRINSKRMMNAIKESYD 203
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 275 KCMRTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVV 331
+C++ Y+GH A+ ++ F D L+ S D ++ W+ +T ++ F G V+
Sbjct: 106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYD 367
+ D + I+ GM D + W +N+K I + YD
Sbjct: 166 SADYDLLGEKIMSCGM-DHSLKLWRINSKRMMNAIKESYD 204
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 271 TFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT-ETGQVIRTFSTGKIPY 329
TF + GH V+ +++ NDG T S DK++ W+T E+G+ S
Sbjct: 94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS------ 147
Query: 330 VVKLNPDDDKQNI------LLAGMS-DKKIVQW-DMNTK-EITQEYDQHLGAVNTITF-- 378
V++ + D K I LLA S D + W D + E + H G V + F
Sbjct: 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK 207
Query: 379 VDSNRRFVTSSDDKSLRVWEF 399
+ R + SDD ++RVW++
Sbjct: 208 TEGVFRLCSGSDDSTVRVWKY 228
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 411 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER----FQLNKKKRFAGHIVAGYACQV 466
H ++ S++ P+T+ LAA S D+ + I++ E F+++ GH V
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH--ENEVKGV 113
Query: 467 NFSPDGRFVMSGDGEGKCWFWD----WKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 522
+S DG ++ + + W W+ + + L+ H WHP E + +A+
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSS 172
Query: 523 WDGLIKYW 530
+D ++ W
Sbjct: 173 YDDTVRIW 180
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 15/130 (11%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 342
H K++ D+ F D T F+T+S D N D T QV++ + T + P K+ I
Sbjct: 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITP--LKEFI 274
Query: 343 LLAGMSDKKIVQ-------------WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389
+L G + K V + +E H G +NT+ + +
Sbjct: 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG 334
Query: 390 DDKSLRVWEF 399
+D +R+ F
Sbjct: 335 EDGFIRLHHF 344
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 15/148 (10%)
Query: 282 GHSKAVRDISFC--NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY--------VV 331
GH+ V DI++ ND + S D + W+ G ++ I +V
Sbjct: 79 GHTAPVLDIAWXPHNDNV-IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSS 389
+P QN+LL+ D I+ WD+ T +T D H + ++ + TS
Sbjct: 138 AWHPT--AQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 390 DDKSLRVWEFGIPVVIKYISEPHMHSMP 417
DK +RV E V+ PH + P
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRP 223
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 320
H+ V D+ + +DG+K TAS DK K WD + Q I+
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ 122
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 330 VVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQEYDQHLGAVNTITFVDSNRRFVT 387
+ +P N L+AG + W++ + + I + H G V + + D + T
Sbjct: 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103
Query: 388 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH----PNTNWLAAQSLDNQILIYSTR 443
+S DK+ ++W+ I+ H P ++H PN + + S D + + TR
Sbjct: 104 ASCDKTAKMWDLSSNQAIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Query: 444 E 444
Sbjct: 160 S 160
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 415 SMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 471
S+ +S P T N+L A S N + + ++ Q K A + G V +S D
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK---AQQMHTGPVLDVCWSDD 97
Query: 472 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW-HPLEQSKVATCGWDGLIKYW 530
G V + + WD S + + + H+ W S V T WD +K+W
Sbjct: 98 GSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Query: 531 D 531
D
Sbjct: 157 D 157
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 342
H V +S + GT+ ++ S D IK WD QV+ + V + K ++
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDSV 184
Query: 343 LLAGMSDKKIVQWD 356
L+ D +I+ WD
Sbjct: 185 FLSCSEDNRILLWD 198
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 8/184 (4%)
Query: 344 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIP 402
++G D I WD+ + + Y H V + + F++ S+D + +W+ P
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 403 VVIKYISEPHMHSMP-SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 461
I +P S++ HP + + +N + + V G
Sbjct: 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG 262
Query: 462 YACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 520
FSP F+ S + D ++FR+ + H W PL S + T
Sbjct: 263 LV----FSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLTT 317
Query: 521 CGWD 524
GWD
Sbjct: 318 VGWD 321
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 35/243 (14%)
Query: 275 KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQ-------VIRTFSTG 325
K + T GH V + + + GT + SYD + W E G+ + + S
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 103
Query: 326 KIPYVVKLNPDDDKQNILLAGMSDKKI--VQWDMNTKEITQEYDQHLGAVNTITFVDS-- 381
+ + + +LL SD K+ V++ N D H VN+ ++ +
Sbjct: 104 SVQWA-----PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 382 -----------NRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNT-- 425
+R+FVT D +++W++ V++ E H + ++ P
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 426 -NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 484
++LA+ S D +I++ KK + ++S G + G+ K
Sbjct: 219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278
Query: 485 WFW 487
W
Sbjct: 279 TLW 281
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/239 (18%), Positives = 90/239 (37%), Gaps = 27/239 (11%)
Query: 275 KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIP 328
K + T GH V + + + GT + SYD + W E G+ + + +
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103
Query: 329 YVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDS------ 381
V + P + +L+A K +V++ N D H VN+ ++ +
Sbjct: 104 SV-QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162
Query: 382 -------NRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNT---NWL 428
+R+FVT D +++W++ V++ E H + ++ P +++
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM 222
Query: 429 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 487
A+ S D +I++ KK + ++S G + G+ K W
Sbjct: 223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 493 KVFRTLKCHEGVCIGCEW-HPLEQSKVATCGWDGLIKYW 530
K+ TL HEG +W HP + +A+C +DG + W
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 35/243 (14%)
Query: 275 KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQ-------VIRTFSTG 325
K + T GH V + + + GT + SYD + W E G+ + + S
Sbjct: 46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 105
Query: 326 KIPYVVKLNPDDDKQNILLAGMSDKKI--VQWDMNTKEITQEYDQHLGAVNTITFVDS-- 381
+ + + +LL SD K+ V++ N D H VN+ ++ +
Sbjct: 106 SVQWA-----PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160
Query: 382 -----------NRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNT-- 425
+R+FVT D +++W++ V++ E H + ++ P
Sbjct: 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220
Query: 426 -NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 484
++LA+ S D +I++ KK + ++S G + G+ K
Sbjct: 221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 280
Query: 485 WFW 487
W
Sbjct: 281 TLW 283
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/239 (18%), Positives = 89/239 (37%), Gaps = 27/239 (11%)
Query: 275 KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIP 328
K + T GH V + + + GT + SYD + W E G+ + + +
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVN 103
Query: 329 YVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDS------ 381
V + P + +L+A K +V++ N D H VN+ ++ +
Sbjct: 104 SV-QWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162
Query: 382 -------NRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNT---NWL 428
+R+FVT D +++W++ V++ E H + ++ P ++
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYX 222
Query: 429 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 487
A+ S D +I++ KK + ++S G + G+ K W
Sbjct: 223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 493 KVFRTLKCHEGVCIGCEW-HPLEQSKVATCGWDGLIKYW 530
K+ TL HEG +W HP + +A+C +DG + W
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIW 82
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 281 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 322
HS V +SF + G +A +D +++WD +T + I T
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 279 TYMGHSKAVRDISFCNDGTKFLTASYDKN----IKYWDTETGQVIRTFST---------- 324
+ + +S ++R + F G+ L ++D N I ++TE G+ I + S
Sbjct: 238 SMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 296
Query: 325 --GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 369
+V+ L+ +D + + AG D K+ WD+ TKE + H
Sbjct: 297 EFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 281 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 322
HS V +SF + G +A +D +++WD +T + I T
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 279 TYMGHSKAVRDISFCNDGTKFLTASYDKN----IKYWDTETGQVIRTFST---------- 324
+ + +S ++R + F G+ L ++D N I ++TE G+ I + S
Sbjct: 228 SMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 286
Query: 325 --GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 369
+V+ L+ +D + + AG D K+ WD+ TKE + H
Sbjct: 287 EFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMH 332
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 79/185 (42%), Gaps = 18/185 (9%)
Query: 279 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLN 334
T GHS+ V + + DG + D + W + G+ ++TF+ + VK
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ--GAVKAV 293
Query: 335 PDDDKQNILLA---GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD- 390
Q+ +LA G SD+ I W++ + D H V +I + + ++
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF 352
Query: 391 -DKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 448
L +W++ P + K + H + S+++ P+ +A+ + D + ++ F+L
Sbjct: 353 AQNQLVIWKY--PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC---FEL 407
Query: 449 NKKKR 453
+ +R
Sbjct: 408 DPARR 412
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 79/185 (42%), Gaps = 18/185 (9%)
Query: 279 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLN 334
T GHS+ V + + DG + D + W + G+ ++TF+ + VK
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ--GAVKAV 282
Query: 335 PDDDKQNILLA---GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD- 390
Q+ +LA G SD+ I W++ + D H V +I + + ++
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF 341
Query: 391 -DKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 448
L +W++ P + K + H + S+++ P+ +A+ + D + ++ F+L
Sbjct: 342 AQNQLVIWKY--PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC---FEL 396
Query: 449 NKKKR 453
+ +R
Sbjct: 397 DPARR 401
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 285 KAVRDISFCNDGTK-FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 339
K+ ++ DG K ++T + DK + +T T VI T S G+ P + + PD K
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK 171
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 10/190 (5%)
Query: 288 RDISFCNDGTK-FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG 346
+ ++ DG + ++T + DT + V T TGK P + L+PD K + +
Sbjct: 77 QGVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKK--LYVTN 134
Query: 347 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 406
DK + + TK + D + +V + D S+ V + VI
Sbjct: 135 NGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSXSISVIDTVTNSVID 194
Query: 407 YISEPHMHSMPS-ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 465
+ + + PS I+++P ++D ++T K A V
Sbjct: 195 TV---KVEAAPSGIAVNPEGTKAYVTNVDKY---FNTVSXIDTGTNKITARIPVGPDPAG 248
Query: 466 VNFSPDGRFV 475
+ +PDG+ V
Sbjct: 249 IAVTPDGKKV 258
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 372 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWL 428
A + + + ++F S + + + F V K+I +P ++ S+ HPN+ L
Sbjct: 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157
Query: 429 AAQSLDNQILIYST 442
AA S D + I+S
Sbjct: 158 AAGSCDFKCRIFSA 171
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 372 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWL 428
A + + + ++F S + + + F V K+I +P ++ S+ HPN+ L
Sbjct: 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157
Query: 429 AAQSLDNQILIYST 442
AA S D + I+S
Sbjct: 158 AAGSCDFKCRIFSA 171
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 307 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA----GMSDKKIVQWDMNTKEI 362
I Y +T TG + +P + K+ + DK + A G +D K +W ++ +
Sbjct: 151 TITYNETSTGVL------NPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDV--V 202
Query: 363 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE----PHMHSMPS 418
+ G + + RF+ ++ R W F IP+ +KY+ E P MP
Sbjct: 203 FSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQ 262
Query: 419 I 419
+
Sbjct: 263 V 263
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 475 VMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
V +G +G WD + + LK HE +HP + TC DG + +WD
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 35/243 (14%)
Query: 275 KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQ-------VIRTFSTG 325
K + T GH V + + + GT + SYD + W E G+ + + S
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 103
Query: 326 KIPYVVKLNPDDDKQNILLAGMSDKKI--VQWDMNTKEITQEYDQHLGAVNTITFVDS-- 381
+ + + +LL SD K+ V++ N D H VN+ ++ +
Sbjct: 104 SVQWA-----PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 382 -----------NRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNT-- 425
+R+FVT D +++W++ V++ E H + ++ P
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 426 -NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 484
++LA+ S D +I++ KK + ++S G + G+ K
Sbjct: 219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278
Query: 485 WFW 487
W
Sbjct: 279 TLW 281
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 477 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW-HPLEQSKVATCGWDGLIKYW 530
S D K + + ++ K+ TL HEG +W HP + +A+C +DG + W
Sbjct: 28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 435 NQILIYSTRERFQLNKKKRFAGHIVAGYA---------CQVNFSPDGRFVMSGDGEGKCW 485
NQ+ + S R L + F+G ++ +A C V+ S + + +GD G+
Sbjct: 132 NQLFVSSIRGATTL---RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL 188
Query: 486 FWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
++F+ K H+ E++P +AT D +K WD
Sbjct: 189 LLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 233
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 435 NQILIYSTRERFQLNKKKRFAGHIVAGYA---------CQVNFSPDGRFVMSGDGEGKCW 485
NQ+ + S R L + F+G ++ +A C V+ S + + +GD G+
Sbjct: 131 NQLFVSSIRGATTL---RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL 187
Query: 486 FWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531
++F+ K H+ E++P +AT D +K WD
Sbjct: 188 LLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 232
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 9/165 (5%)
Query: 279 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 338
T GHS V +++ +DG + + D ++ WD + I F+ VK
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCP 269
Query: 339 KQNILLA---GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKS 393
Q+ LLA G DK+I W+ T D V ++ + ++ +++ D +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIMSTHGFPDNN 328
Query: 394 LRVWEFGIPVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQI 437
L +W + + K + P H + +L P+ L+ + D +
Sbjct: 329 LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,297,919
Number of Sequences: 62578
Number of extensions: 592333
Number of successful extensions: 2103
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1290
Number of HSP's gapped (non-prelim): 377
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)