Query 009597
Match_columns 531
No_of_seqs 1007 out of 2379
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 15:02:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0282 mRNA splicing factor [ 100.0 3.4E-68 7.4E-73 516.3 23.7 396 81-531 41-503 (503)
2 KOG0272 U4/U6 small nuclear ri 100.0 2E-40 4.3E-45 317.9 19.3 273 249-531 182-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.7E-39 3.8E-44 307.5 22.1 279 246-531 119-437 (480)
4 KOG0271 Notchless-like WD40 re 100.0 1.3E-38 2.7E-43 301.7 20.1 278 243-530 158-478 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-37 2.6E-42 298.8 18.8 251 274-531 165-416 (459)
6 KOG0286 G-protein beta subunit 100.0 7.3E-36 1.6E-40 274.4 29.5 280 245-531 58-343 (343)
7 KOG0315 G-protein beta subunit 100.0 9.7E-34 2.1E-38 255.0 27.8 269 255-531 11-286 (311)
8 KOG0263 Transcription initiati 100.0 1.3E-33 2.8E-38 290.3 23.7 250 272-531 366-647 (707)
9 KOG0286 G-protein beta subunit 100.0 3E-32 6.6E-37 250.6 30.0 249 273-531 44-301 (343)
10 KOG0295 WD40 repeat-containing 100.0 5.9E-34 1.3E-38 268.8 19.2 272 250-531 116-404 (406)
11 KOG0273 Beta-transducin family 100.0 3.6E-33 7.8E-38 271.2 24.5 274 245-531 238-521 (524)
12 KOG0279 G protein beta subunit 100.0 3E-32 6.5E-37 249.3 28.4 247 274-531 5-260 (315)
13 KOG0265 U5 snRNP-specific prot 100.0 1.4E-32 3E-37 253.8 25.4 278 248-529 53-334 (338)
14 KOG0279 G protein beta subunit 100.0 4.4E-32 9.6E-37 248.2 26.9 263 256-531 30-311 (315)
15 KOG0284 Polyadenylation factor 100.0 5.5E-34 1.2E-38 272.4 12.8 276 245-531 99-378 (464)
16 KOG0293 WD40 repeat-containing 100.0 1E-32 2.2E-37 263.8 21.0 273 249-530 231-510 (519)
17 KOG0266 WD40 repeat-containing 100.0 1E-31 2.3E-36 281.8 28.3 280 246-531 163-452 (456)
18 KOG0263 Transcription initiati 100.0 7.9E-32 1.7E-36 277.2 24.0 261 251-521 387-703 (707)
19 KOG0285 Pleiotropic regulator 100.0 5.7E-32 1.2E-36 254.6 20.7 275 245-531 154-437 (460)
20 KOG0276 Vesicle coat complex C 100.0 6.4E-32 1.4E-36 270.0 22.2 247 276-531 5-255 (794)
21 KOG0285 Pleiotropic regulator 100.0 1.2E-31 2.6E-36 252.5 20.7 246 274-531 141-387 (460)
22 KOG0281 Beta-TrCP (transducin 100.0 1.4E-32 3.1E-37 257.6 13.5 258 253-531 206-475 (499)
23 KOG0296 Angio-associated migra 100.0 2.4E-30 5.2E-35 244.7 28.6 273 248-531 70-396 (399)
24 KOG0316 Conserved WD40 repeat- 100.0 9E-31 2E-35 234.1 23.8 272 246-530 21-296 (307)
25 cd00200 WD40 WD40 domain, foun 100.0 1E-29 2.2E-34 247.5 33.5 274 248-531 15-289 (289)
26 KOG0318 WD40 repeat stress pro 100.0 2.3E-30 4.9E-35 254.7 26.6 285 240-531 188-558 (603)
27 KOG0316 Conserved WD40 repeat- 100.0 1.2E-30 2.6E-35 233.3 21.5 243 275-531 8-255 (307)
28 KOG0645 WD40 repeat protein [G 100.0 2.7E-29 5.9E-34 229.0 29.1 252 275-531 5-309 (312)
29 KOG0295 WD40 repeat-containing 100.0 2.1E-30 4.7E-35 244.8 20.1 248 275-531 99-362 (406)
30 KOG0319 WD40-repeat-containing 100.0 3.3E-30 7.3E-35 262.6 22.7 272 250-530 332-616 (775)
31 KOG0291 WD40-repeat-containing 100.0 4.2E-29 9.1E-34 254.8 29.6 251 244-497 352-619 (893)
32 KOG0275 Conserved WD40 repeat- 100.0 2.6E-31 5.7E-36 247.0 12.1 284 242-531 213-507 (508)
33 KOG0315 G-protein beta subunit 100.0 5E-29 1.1E-33 224.6 26.2 252 251-511 49-309 (311)
34 KOG0266 WD40 repeat-containing 100.0 5.9E-29 1.3E-33 261.1 30.7 248 277-531 151-407 (456)
35 KOG0284 Polyadenylation factor 100.0 6.3E-31 1.4E-35 251.5 13.9 240 283-531 95-335 (464)
36 cd00200 WD40 WD40 domain, foun 100.0 2.8E-28 6.2E-33 237.3 31.4 245 277-531 2-247 (289)
37 KOG0319 WD40-repeat-containing 100.0 8.7E-30 1.9E-34 259.6 21.0 283 242-531 62-575 (775)
38 KOG0273 Beta-transducin family 100.0 7.1E-29 1.5E-33 241.4 25.4 275 246-531 182-480 (524)
39 KOG0278 Serine/threonine kinas 100.0 3.8E-30 8.3E-35 231.8 14.7 265 253-530 28-294 (334)
40 KOG0643 Translation initiation 100.0 8.7E-30 1.9E-34 231.7 17.0 274 246-529 14-313 (327)
41 KOG0281 Beta-TrCP (transducin 100.0 1.1E-30 2.5E-35 244.9 10.2 229 283-531 196-426 (499)
42 PLN00181 protein SPA1-RELATED; 100.0 9E-28 1.9E-32 269.8 35.0 256 266-531 460-736 (793)
43 KOG0313 Microtubule binding pr 100.0 1.8E-28 3.9E-33 232.9 23.4 268 254-530 115-415 (423)
44 KOG0306 WD40-repeat-containing 100.0 1.7E-28 3.7E-33 250.2 24.7 243 278-531 367-620 (888)
45 KOG0265 U5 snRNP-specific prot 100.0 1.4E-28 3.1E-33 227.3 21.6 247 275-531 38-294 (338)
46 KOG0292 Vesicle coat complex C 100.0 1.1E-28 2.4E-33 255.1 23.1 271 249-527 16-316 (1202)
47 PLN00181 protein SPA1-RELATED; 100.0 2.7E-27 5.8E-32 266.0 34.8 277 247-531 488-791 (793)
48 KOG0291 WD40-repeat-containing 100.0 1.5E-27 3.2E-32 243.5 28.1 275 247-531 270-548 (893)
49 KOG0305 Anaphase promoting com 100.0 1.1E-27 2.4E-32 242.9 26.6 274 245-531 180-459 (484)
50 KOG0277 Peroxisomal targeting 100.0 3.3E-28 7.3E-33 220.0 20.2 262 264-531 38-307 (311)
51 KOG0292 Vesicle coat complex C 100.0 2.6E-28 5.6E-33 252.4 20.5 247 278-531 3-278 (1202)
52 KOG0276 Vesicle coat complex C 100.0 1.1E-27 2.4E-32 239.8 23.2 268 252-529 23-295 (794)
53 KOG0274 Cdc4 and related F-box 100.0 4.6E-27 1E-31 246.8 28.2 261 254-531 218-480 (537)
54 KOG1446 Histone H3 (Lys4) meth 100.0 2.3E-26 4.9E-31 214.8 29.4 249 275-531 5-260 (311)
55 KOG0283 WD40 repeat-containing 100.0 4.6E-27 9.9E-32 244.2 24.7 250 276-531 258-574 (712)
56 PTZ00421 coronin; Provisional 100.0 9.1E-26 2E-30 236.6 32.8 228 279-512 70-313 (493)
57 KOG0288 WD40 repeat protein Ti 100.0 1.7E-27 3.7E-32 228.4 17.7 272 250-530 183-458 (459)
58 KOG0640 mRNA cleavage stimulat 100.0 1E-27 2.2E-32 222.2 14.3 283 241-530 111-423 (430)
59 KOG0282 mRNA splicing factor [ 100.0 7.9E-28 1.7E-32 235.0 14.2 299 223-531 121-460 (503)
60 KOG1407 WD40 repeat protein [F 100.0 2.5E-26 5.4E-31 208.7 22.9 269 244-524 22-293 (313)
61 PTZ00420 coronin; Provisional 99.9 4.4E-25 9.6E-30 232.6 34.4 249 258-513 48-317 (568)
62 KOG0318 WD40 repeat stress pro 99.9 4.3E-25 9.4E-30 217.6 30.0 263 264-531 39-348 (603)
63 KOG0294 WD40 repeat-containing 99.9 1.4E-25 3.1E-30 208.8 23.6 247 272-531 31-279 (362)
64 KOG0772 Uncharacterized conser 99.9 7.7E-26 1.7E-30 222.2 22.6 218 272-492 155-396 (641)
65 KOG0296 Angio-associated migra 99.9 2.1E-25 4.6E-30 211.2 24.6 250 275-531 55-354 (399)
66 KOG0313 Microtubule binding pr 99.9 1.9E-25 4.2E-30 212.4 23.8 249 271-531 93-374 (423)
67 KOG0283 WD40 repeat-containing 99.9 1.6E-26 3.5E-31 240.1 17.9 242 243-491 268-577 (712)
68 KOG0310 Conserved WD40 repeat- 99.9 8E-26 1.7E-30 221.4 20.3 255 264-529 48-305 (487)
69 KOG0268 Sof1-like rRNA process 99.9 2.3E-26 5.1E-31 217.3 15.9 271 245-530 69-342 (433)
70 KOG0306 WD40-repeat-containing 99.9 5E-25 1.1E-29 225.1 26.0 276 243-531 374-662 (888)
71 KOG1407 WD40 repeat protein [F 99.9 3.7E-25 7.9E-30 201.1 20.8 243 278-529 14-257 (313)
72 PTZ00420 coronin; Provisional 99.9 7.8E-24 1.7E-28 223.2 32.5 223 302-531 50-291 (568)
73 KOG1446 Histone H3 (Lys4) meth 99.9 5.7E-24 1.2E-28 198.8 27.3 274 246-530 18-300 (311)
74 KOG0277 Peroxisomal targeting 99.9 4.3E-25 9.3E-30 199.9 18.9 235 288-531 12-263 (311)
75 PTZ00421 coronin; Provisional 99.9 1.3E-23 2.8E-28 220.3 31.7 243 283-531 19-288 (493)
76 KOG0289 mRNA splicing factor [ 99.9 3.7E-24 7.9E-29 206.7 24.4 265 257-530 234-503 (506)
77 KOG2096 WD40 repeat protein [G 99.9 2.3E-24 5.1E-29 200.7 21.9 252 274-530 76-399 (420)
78 KOG0293 WD40 repeat-containing 99.9 7.6E-25 1.6E-29 210.1 18.7 251 271-531 211-468 (519)
79 KOG0641 WD40 repeat protein [G 99.9 2.9E-23 6.4E-28 184.8 27.1 281 243-530 33-346 (350)
80 KOG0299 U3 snoRNP-associated p 99.9 2.7E-24 5.8E-29 209.3 22.2 274 247-527 147-450 (479)
81 KOG0264 Nucleosome remodeling 99.9 2.2E-24 4.8E-29 210.0 21.3 245 281-531 121-402 (422)
82 KOG0275 Conserved WD40 repeat- 99.9 6.6E-25 1.4E-29 204.5 16.5 240 282-530 211-464 (508)
83 KOG0647 mRNA export protein (c 99.9 7.8E-24 1.7E-28 196.2 23.1 240 282-531 25-279 (347)
84 KOG0299 U3 snoRNP-associated p 99.9 4.9E-24 1.1E-28 207.4 21.4 244 277-530 135-407 (479)
85 KOG0645 WD40 repeat protein [G 99.9 4E-23 8.6E-28 188.9 25.9 197 328-530 17-222 (312)
86 KOG0300 WD40 repeat-containing 99.9 3E-24 6.5E-29 199.7 17.9 270 254-531 160-474 (481)
87 KOG0973 Histone transcription 99.9 1.6E-23 3.6E-28 222.9 25.6 274 249-530 20-352 (942)
88 KOG0274 Cdc4 and related F-box 99.9 1.3E-23 2.7E-28 220.9 24.3 236 277-531 200-439 (537)
89 KOG0310 Conserved WD40 repeat- 99.9 7.9E-24 1.7E-28 207.5 20.8 232 249-489 75-308 (487)
90 KOG0640 mRNA cleavage stimulat 99.9 8.7E-24 1.9E-28 196.2 19.7 219 277-501 105-346 (430)
91 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4E-22 8.6E-27 197.8 33.3 267 257-531 4-277 (300)
92 KOG0289 mRNA splicing factor [ 99.9 5.1E-23 1.1E-27 198.9 25.5 237 285-530 220-459 (506)
93 KOG1036 Mitotic spindle checkp 99.9 4.9E-23 1.1E-27 191.6 23.7 235 284-531 13-260 (323)
94 KOG0643 Translation initiation 99.9 1.3E-22 2.7E-27 185.2 24.5 235 279-523 5-252 (327)
95 KOG4283 Transcription-coupled 99.9 4.2E-23 9.1E-28 190.5 21.5 276 253-530 55-362 (397)
96 KOG0647 mRNA export protein (c 99.9 4.6E-23 1E-27 191.1 21.4 273 246-524 31-315 (347)
97 KOG0269 WD40 repeat-containing 99.9 2.1E-24 4.5E-29 221.4 13.5 237 286-528 89-335 (839)
98 KOG1408 WD40 repeat protein [F 99.9 1.6E-23 3.5E-28 212.6 19.1 246 282-530 457-710 (1080)
99 KOG0308 Conserved WD40 repeat- 99.9 6.7E-24 1.5E-28 213.9 16.2 269 254-530 37-324 (735)
100 KOG0308 Conserved WD40 repeat- 99.9 1.6E-23 3.4E-28 211.3 17.4 240 282-529 19-281 (735)
101 KOG0321 WD40 repeat-containing 99.9 4.9E-23 1.1E-27 207.4 20.9 273 256-531 66-389 (720)
102 KOG0301 Phospholipase A2-activ 99.9 6.8E-23 1.5E-27 208.2 22.0 241 275-531 5-247 (745)
103 KOG1332 Vesicle coat complex C 99.9 3.7E-23 7.9E-28 186.5 17.8 247 280-530 7-283 (299)
104 KOG0268 Sof1-like rRNA process 99.9 1E-23 2.2E-28 199.5 14.0 241 274-531 56-300 (433)
105 KOG0278 Serine/threonine kinas 99.9 1.3E-23 2.9E-28 189.7 13.7 229 255-495 72-302 (334)
106 KOG0288 WD40 repeat protein Ti 99.9 1.6E-23 3.5E-28 201.3 14.8 228 251-487 228-458 (459)
107 KOG0973 Histone transcription 99.9 2.7E-22 5.9E-27 213.7 25.1 245 283-531 12-310 (942)
108 KOG0646 WD40 repeat protein [G 99.9 1E-22 2.3E-27 198.6 19.7 247 262-513 59-330 (476)
109 KOG0301 Phospholipase A2-activ 99.9 3.1E-22 6.8E-27 203.4 23.3 255 256-530 27-285 (745)
110 KOG1273 WD40 repeat protein [G 99.9 1.9E-22 4.2E-27 187.8 20.0 281 245-531 26-320 (405)
111 KOG1274 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 205.1 26.6 244 281-531 10-260 (933)
112 KOG2445 Nuclear pore complex c 99.9 2.8E-21 6.1E-26 179.6 25.3 245 281-530 10-315 (361)
113 KOG0300 WD40 repeat-containing 99.9 2.6E-22 5.7E-27 186.8 18.3 247 274-531 138-426 (481)
114 KOG0639 Transducin-like enhanc 99.9 2E-22 4.3E-27 197.6 17.5 255 263-530 439-701 (705)
115 KOG0641 WD40 repeat protein [G 99.9 1.2E-20 2.7E-25 168.1 27.0 252 273-531 22-301 (350)
116 KOG0646 WD40 repeat protein [G 99.9 2E-21 4.4E-26 189.7 22.8 257 263-531 17-305 (476)
117 KOG1332 Vesicle coat complex C 99.9 1.3E-21 2.8E-26 176.5 19.3 248 240-490 9-286 (299)
118 KOG1539 WD repeat protein [Gen 99.9 2.6E-20 5.7E-25 192.9 30.7 267 258-530 176-645 (910)
119 KOG1036 Mitotic spindle checkp 99.9 2.3E-21 5E-26 180.5 19.8 264 251-523 22-294 (323)
120 KOG0269 WD40 repeat-containing 99.9 4.2E-22 9.2E-27 204.6 16.3 240 286-531 41-294 (839)
121 KOG0305 Anaphase promoting com 99.9 3.8E-22 8.3E-27 202.7 15.5 241 242-492 217-463 (484)
122 KOG0650 WD40 repeat nucleolar 99.9 2.6E-21 5.7E-26 193.5 21.1 253 268-530 384-677 (733)
123 KOG0264 Nucleosome remodeling 99.9 2.1E-21 4.6E-26 189.2 19.1 233 254-490 137-404 (422)
124 KOG4328 WD40 protein [Function 99.9 4E-21 8.6E-26 187.1 19.4 274 255-530 201-492 (498)
125 KOG0639 Transducin-like enhanc 99.9 1.8E-21 3.9E-26 190.9 16.0 242 275-530 411-660 (705)
126 KOG0267 Microtubule severing p 99.9 2.4E-22 5.2E-27 204.9 9.4 237 278-524 22-259 (825)
127 KOG0302 Ribosome Assembly prot 99.9 1.1E-20 2.4E-25 180.0 19.4 241 282-526 149-432 (440)
128 KOG2048 WD40 repeat protein [G 99.9 1.9E-19 4.2E-24 183.0 27.9 245 282-530 23-272 (691)
129 KOG1274 WD40 repeat protein [G 99.9 4.6E-20 1E-24 193.1 23.4 254 248-515 19-283 (933)
130 KOG2055 WD40 repeat protein [G 99.9 4.4E-20 9.5E-25 180.0 21.7 267 259-530 230-509 (514)
131 KOG0267 Microtubule severing p 99.9 8.2E-22 1.8E-26 201.1 9.5 226 248-482 34-260 (825)
132 KOG0294 WD40 repeat-containing 99.9 1.3E-19 2.9E-24 169.1 22.6 244 253-510 52-305 (362)
133 KOG0302 Ribosome Assembly prot 99.9 3.3E-20 7.2E-25 176.7 18.7 197 331-531 157-376 (440)
134 KOG0772 Uncharacterized conser 99.8 1.2E-20 2.7E-25 185.8 15.2 202 279-488 263-485 (641)
135 KOG0270 WD40 repeat-containing 99.8 8.5E-20 1.8E-24 177.4 18.1 240 287-531 176-447 (463)
136 KOG2106 Uncharacterized conser 99.8 1.7E-18 3.7E-23 170.5 26.7 270 243-531 247-519 (626)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 5.3E-18 1.2E-22 168.2 29.9 251 250-512 38-300 (300)
138 KOG0270 WD40 repeat-containing 99.8 3.7E-19 8.1E-24 172.9 19.8 239 287-531 128-402 (463)
139 KOG4283 Transcription-coupled 99.8 8.9E-19 1.9E-23 162.1 20.5 209 281-493 40-279 (397)
140 KOG1408 WD40 repeat protein [F 99.8 5.9E-19 1.3E-23 179.7 20.9 265 263-531 345-669 (1080)
141 KOG4378 Nuclear protein COP1 [ 99.8 4.4E-19 9.6E-24 174.1 18.4 256 247-512 39-303 (673)
142 KOG2106 Uncharacterized conser 99.8 1.2E-18 2.6E-23 171.5 20.6 251 273-531 357-624 (626)
143 KOG1063 RNA polymerase II elon 99.8 4E-18 8.7E-23 173.7 24.4 276 245-530 194-645 (764)
144 KOG1188 WD40 repeat protein [G 99.8 2.7E-19 5.9E-24 168.8 14.7 274 255-530 41-343 (376)
145 KOG2048 WD40 repeat protein [G 99.8 6.2E-18 1.4E-22 172.1 24.6 270 247-529 30-315 (691)
146 KOG1063 RNA polymerase II elon 99.8 1.1E-17 2.4E-22 170.5 24.7 266 261-530 31-388 (764)
147 KOG1034 Transcriptional repres 99.8 1.9E-18 4.1E-23 162.2 17.4 252 275-531 78-381 (385)
148 KOG0307 Vesicle coat complex C 99.8 3.1E-19 6.8E-24 191.3 13.7 242 284-530 64-324 (1049)
149 KOG2919 Guanine nucleotide-bin 99.8 5.1E-18 1.1E-22 159.0 19.8 238 287-531 52-325 (406)
150 KOG0650 WD40 repeat nucleolar 99.8 1.2E-18 2.6E-23 174.7 16.3 271 249-530 407-732 (733)
151 KOG4378 Nuclear protein COP1 [ 99.8 3.2E-18 6.9E-23 168.1 18.9 219 246-472 83-305 (673)
152 KOG1273 WD40 repeat protein [G 99.8 8.6E-18 1.9E-22 156.9 20.2 204 320-531 19-224 (405)
153 KOG4328 WD40 protein [Function 99.8 4.8E-18 1E-22 165.8 19.2 255 271-531 173-448 (498)
154 KOG0322 G-protein beta subunit 99.8 1.2E-18 2.5E-23 159.1 13.7 252 275-531 5-321 (323)
155 KOG2055 WD40 repeat protein [G 99.8 9.7E-18 2.1E-22 163.8 20.8 231 284-523 213-455 (514)
156 COG2319 FOG: WD40 repeat [Gene 99.8 3E-16 6.5E-21 160.7 31.5 245 279-531 60-312 (466)
157 KOG1539 WD repeat protein [Gen 99.8 1.8E-16 4E-21 164.7 29.1 269 259-531 129-521 (910)
158 KOG0642 Cell-cycle nuclear pro 99.8 2.8E-18 6.1E-23 171.4 15.0 248 278-531 288-559 (577)
159 KOG1538 Uncharacterized conser 99.8 1.7E-17 3.8E-22 167.9 20.7 271 245-531 15-291 (1081)
160 KOG1007 WD repeat protein TSSC 99.8 1.6E-17 3.5E-22 153.4 17.5 243 278-529 57-357 (370)
161 KOG1445 Tumor-specific antigen 99.8 1.2E-17 2.6E-22 168.2 17.2 122 275-399 70-199 (1012)
162 KOG0307 Vesicle coat complex C 99.8 1.9E-18 4.2E-23 185.2 10.9 233 256-493 82-330 (1049)
163 KOG0303 Actin-binding protein 99.8 5.1E-17 1.1E-21 155.9 19.0 210 278-494 75-298 (472)
164 KOG2445 Nuclear pore complex c 99.8 1.3E-16 2.8E-21 148.8 21.2 252 244-500 15-331 (361)
165 KOG4227 WD40 repeat protein [G 99.8 5.3E-17 1.2E-21 155.3 19.0 253 276-531 48-385 (609)
166 KOG1034 Transcriptional repres 99.8 2.8E-17 6.1E-22 154.4 16.5 249 279-531 33-335 (385)
167 KOG2919 Guanine nucleotide-bin 99.7 1.4E-16 3E-21 149.4 20.2 273 243-524 50-361 (406)
168 KOG2096 WD40 repeat protein [G 99.7 4.6E-17 1E-21 152.3 17.0 238 241-488 85-400 (420)
169 COG2319 FOG: WD40 repeat [Gene 99.7 5.3E-15 1.2E-19 151.4 33.9 263 259-531 129-398 (466)
170 KOG0644 Uncharacterized conser 99.7 1.2E-18 2.6E-23 180.2 4.9 241 273-531 179-424 (1113)
171 KOG1517 Guanine nucleotide bin 99.7 1.9E-16 4.2E-21 167.9 21.1 270 256-530 1078-1378(1387)
172 KOG0649 WD40 repeat protein [G 99.7 3.6E-15 7.7E-20 135.0 25.8 268 247-530 15-313 (325)
173 KOG0290 Conserved WD40 repeat- 99.7 1.2E-15 2.5E-20 141.4 20.7 253 274-531 35-316 (364)
174 KOG0321 WD40 repeat-containing 99.7 4.6E-16 1E-20 157.4 19.6 240 290-531 55-345 (720)
175 PRK11028 6-phosphogluconolacto 99.7 1.3E-14 2.8E-19 146.9 29.6 265 261-531 9-302 (330)
176 KOG0290 Conserved WD40 repeat- 99.7 8.9E-16 1.9E-20 142.1 18.5 236 282-524 94-357 (364)
177 PRK01742 tolB translocation pr 99.7 1.8E-15 3.8E-20 158.5 23.4 234 263-512 183-425 (429)
178 KOG1334 WD40 repeat protein [G 99.7 8.1E-17 1.8E-21 158.3 11.5 253 275-530 133-463 (559)
179 KOG1517 Guanine nucleotide bin 99.7 3E-15 6.5E-20 159.0 23.9 247 282-531 1062-1331(1387)
180 KOG1009 Chromatin assembly com 99.7 3.3E-15 7.2E-20 144.2 21.5 265 256-529 28-368 (434)
181 KOG0303 Actin-binding protein 99.7 3.3E-15 7.2E-20 143.6 20.6 200 324-531 78-292 (472)
182 KOG1007 WD repeat protein TSSC 99.7 2.6E-15 5.7E-20 138.9 17.8 221 304-530 38-286 (370)
183 KOG1310 WD40 repeat protein [G 99.7 7.4E-16 1.6E-20 153.4 14.6 220 276-496 42-309 (758)
184 KOG1587 Cytoplasmic dynein int 99.7 8.4E-15 1.8E-19 153.4 23.1 259 265-531 223-514 (555)
185 KOG0771 Prolactin regulatory e 99.7 1.9E-15 4.1E-20 146.9 15.7 193 329-529 148-350 (398)
186 KOG2394 WD40 protein DMR-N9 [G 99.7 1.6E-14 3.6E-19 143.8 21.9 220 286-512 125-384 (636)
187 KOG1587 Cytoplasmic dynein int 99.6 2.7E-14 5.8E-19 149.7 23.9 222 306-531 222-470 (555)
188 KOG1188 WD40 repeat protein [G 99.6 6.6E-15 1.4E-19 139.4 16.0 187 341-531 41-240 (376)
189 KOG0322 G-protein beta subunit 99.6 7.9E-15 1.7E-19 134.3 15.8 236 247-489 19-322 (323)
190 KOG1310 WD40 repeat protein [G 99.6 1.2E-14 2.5E-19 144.9 17.7 202 242-444 50-304 (758)
191 KOG1240 Protein kinase contain 99.6 4.6E-14 9.9E-19 152.3 23.6 278 251-530 1058-1430(1431)
192 KOG1240 Protein kinase contain 99.6 7.1E-14 1.5E-18 150.9 23.1 251 273-531 1037-1332(1431)
193 KOG1963 WD40 repeat protein [G 99.6 1.2E-13 2.5E-18 145.3 23.9 262 262-529 35-318 (792)
194 KOG2111 Uncharacterized conser 99.6 3.4E-13 7.3E-18 126.9 24.4 178 264-445 75-258 (346)
195 KOG0771 Prolactin regulatory e 99.6 2.9E-15 6.2E-20 145.6 10.7 197 247-444 149-355 (398)
196 KOG1272 WD40-repeat-containing 99.6 2.9E-15 6.3E-20 146.7 10.4 229 286-530 131-359 (545)
197 KOG2110 Uncharacterized conser 99.6 6E-13 1.3E-17 127.4 25.6 233 283-530 4-245 (391)
198 KOG0649 WD40 repeat protein [G 99.6 3.3E-13 7.1E-18 122.4 21.9 232 286-530 12-271 (325)
199 KOG1524 WD40 repeat-containing 99.6 1.9E-14 4E-19 143.1 14.8 220 282-512 12-237 (737)
200 KOG1445 Tumor-specific antigen 99.6 2E-14 4.4E-19 145.2 14.9 231 295-531 590-842 (1012)
201 KOG0642 Cell-cycle nuclear pro 99.6 1.4E-14 3E-19 145.2 13.6 248 247-503 299-574 (577)
202 PRK03629 tolB translocation pr 99.6 8.6E-13 1.9E-17 138.0 27.6 234 265-512 180-427 (429)
203 KOG1523 Actin-related protein 99.6 2.1E-13 4.5E-18 128.3 20.3 240 279-524 5-269 (361)
204 KOG2321 WD40 repeat protein [G 99.6 1.9E-13 4.2E-18 137.2 21.2 236 283-528 50-338 (703)
205 PF02239 Cytochrom_D1: Cytochr 99.6 2.2E-12 4.8E-17 131.3 29.4 269 260-531 12-345 (369)
206 KOG1009 Chromatin assembly com 99.6 1.7E-13 3.7E-18 132.5 19.7 225 284-512 13-292 (434)
207 KOG1524 WD40 repeat-containing 99.6 3.4E-14 7.4E-19 141.3 14.1 189 273-486 93-282 (737)
208 PRK04922 tolB translocation pr 99.6 1.2E-12 2.6E-17 137.3 26.3 234 265-512 185-432 (433)
209 KOG2110 Uncharacterized conser 99.6 9E-13 2E-17 126.3 22.4 193 286-490 48-248 (391)
210 PRK11028 6-phosphogluconolacto 99.5 3.7E-12 8E-17 128.9 26.4 226 299-531 5-256 (330)
211 KOG4497 Uncharacterized conser 99.5 6.3E-14 1.4E-18 132.0 12.2 223 289-531 13-238 (447)
212 PRK02889 tolB translocation pr 99.5 2E-12 4.3E-17 135.3 24.7 235 264-512 176-424 (427)
213 KOG1272 WD40-repeat-containing 99.5 1.6E-14 3.4E-19 141.6 8.0 254 253-522 140-398 (545)
214 KOG1538 Uncharacterized conser 99.5 2.9E-13 6.3E-18 137.6 17.2 230 286-530 14-249 (1081)
215 KOG3881 Uncharacterized conser 99.5 1.3E-12 2.9E-17 125.9 20.2 240 283-531 54-318 (412)
216 KOG3881 Uncharacterized conser 99.5 1.4E-12 3E-17 125.8 18.6 225 279-512 100-341 (412)
217 PRK05137 tolB translocation pr 99.5 1.2E-11 2.7E-16 129.8 27.7 234 264-512 182-432 (435)
218 KOG2111 Uncharacterized conser 99.5 1.5E-11 3.2E-16 115.9 24.4 234 286-530 7-253 (346)
219 KOG1963 WD40 repeat protein [G 99.5 1.1E-11 2.5E-16 130.5 25.4 245 282-530 203-484 (792)
220 KOG2394 WD40 protein DMR-N9 [G 99.5 7.9E-13 1.7E-17 131.9 14.1 162 285-469 220-383 (636)
221 KOG0644 Uncharacterized conser 99.5 9.4E-14 2E-18 144.5 7.2 260 248-530 196-465 (1113)
222 KOG1523 Actin-related protein 99.4 3.2E-12 7E-17 120.4 16.2 199 326-530 11-233 (361)
223 PRK01742 tolB translocation pr 99.4 9.6E-12 2.1E-16 130.3 21.8 209 305-531 183-399 (429)
224 KOG2139 WD40 repeat protein [G 99.4 9.2E-12 2E-16 119.0 19.3 227 285-523 99-365 (445)
225 KOG4497 Uncharacterized conser 99.4 3.9E-12 8.4E-17 120.1 15.4 257 258-530 65-388 (447)
226 PF08662 eIF2A: Eukaryotic tra 99.4 2.7E-11 5.7E-16 112.4 20.6 136 351-498 38-186 (194)
227 PF08662 eIF2A: Eukaryotic tra 99.4 2E-11 4.2E-16 113.3 18.5 147 374-531 9-177 (194)
228 KOG1354 Serine/threonine prote 99.4 2E-11 4.4E-16 116.0 18.1 245 283-531 24-357 (433)
229 TIGR02800 propeller_TolB tol-p 99.4 1.6E-10 3.6E-15 120.7 27.0 232 265-510 171-416 (417)
230 KOG4227 WD40 repeat protein [G 99.4 6.1E-12 1.3E-16 121.0 13.7 165 364-531 50-223 (609)
231 KOG2139 WD40 repeat protein [G 99.4 3.4E-10 7.3E-15 108.5 24.5 275 249-530 105-428 (445)
232 KOG1064 RAVE (regulator of V-A 99.4 5.7E-12 1.2E-16 140.5 13.9 229 279-526 2203-2439(2439)
233 PRK00178 tolB translocation pr 99.4 4.2E-10 9.2E-15 118.2 27.4 233 266-512 181-427 (430)
234 PRK04792 tolB translocation pr 99.3 4.6E-10 1E-14 118.0 26.0 233 266-512 200-446 (448)
235 KOG0974 WD-repeat protein WDR6 99.3 3.9E-11 8.5E-16 128.6 17.4 195 290-491 93-289 (967)
236 KOG4547 WD40 repeat-containing 99.3 8.5E-10 1.9E-14 112.1 23.5 189 294-490 3-220 (541)
237 PF10282 Lactonase: Lactonase, 99.3 1.1E-08 2.3E-13 104.2 31.8 246 283-531 35-320 (345)
238 KOG1409 Uncharacterized conser 99.3 1.5E-10 3.2E-15 110.2 16.5 249 273-531 13-268 (404)
239 PRK03629 tolB translocation pr 99.3 2.9E-09 6.2E-14 111.5 27.2 207 306-526 179-396 (429)
240 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.7E-08 3.7E-13 101.0 30.8 259 264-531 27-328 (352)
241 PRK02889 tolB translocation pr 99.2 1.4E-09 3.1E-14 113.8 24.0 203 306-523 176-390 (427)
242 KOG0280 Uncharacterized conser 99.2 1.4E-09 3E-14 101.8 19.1 240 283-530 68-330 (339)
243 KOG4547 WD40 repeat-containing 99.2 1.8E-09 3.9E-14 109.8 21.6 185 339-530 4-217 (541)
244 KOG2315 Predicted translation 99.2 1.7E-09 3.7E-14 109.2 21.1 260 251-531 43-388 (566)
245 PRK05137 tolB translocation pr 99.2 6.1E-09 1.3E-13 109.5 25.9 203 306-522 182-395 (435)
246 PRK04922 tolB translocation pr 99.2 3.9E-09 8.4E-14 110.9 24.1 203 306-523 184-398 (433)
247 KOG2321 WD40 repeat protein [G 99.2 8.1E-10 1.8E-14 111.5 17.0 203 325-531 51-300 (703)
248 KOG4190 Uncharacterized conser 99.2 8.5E-11 1.9E-15 117.6 8.8 185 277-500 728-916 (1034)
249 KOG0974 WD-repeat protein WDR6 99.2 9.6E-10 2.1E-14 118.1 17.0 182 341-531 100-286 (967)
250 KOG1409 Uncharacterized conser 99.2 1.7E-09 3.7E-14 103.1 16.7 166 275-445 105-272 (404)
251 PRK01029 tolB translocation pr 99.1 3.7E-08 8E-13 102.9 27.2 237 265-512 166-424 (428)
252 TIGR03300 assembly_YfgL outer 99.1 5.7E-08 1.2E-12 100.2 27.6 252 260-530 111-376 (377)
253 PF02239 Cytochrom_D1: Cytochr 99.1 1.7E-08 3.7E-13 102.9 22.6 187 341-531 6-200 (369)
254 PF10282 Lactonase: Lactonase, 99.1 4.9E-07 1.1E-11 92.0 33.2 245 262-510 60-345 (345)
255 KOG4532 WD40-like repeat conta 99.1 3.5E-08 7.6E-13 91.3 21.5 223 288-512 71-312 (344)
256 TIGR02800 propeller_TolB tol-p 99.1 7E-08 1.5E-12 100.9 26.7 204 306-524 170-385 (417)
257 PRK01029 tolB translocation pr 99.1 4.7E-08 1E-12 102.1 24.8 217 307-531 166-401 (428)
258 PLN02919 haloacid dehalogenase 99.1 1.8E-07 3.9E-12 107.5 31.4 239 288-531 571-886 (1057)
259 KOG1354 Serine/threonine prote 99.0 4.3E-09 9.3E-14 100.4 14.0 242 244-491 27-360 (433)
260 TIGR02658 TTQ_MADH_Hv methylam 99.0 5.5E-07 1.2E-11 90.2 29.7 229 258-498 71-338 (352)
261 PF08450 SGL: SMP-30/Gluconola 99.0 5.1E-07 1.1E-11 87.3 28.9 223 289-521 4-244 (246)
262 TIGR03300 assembly_YfgL outer 99.0 1.4E-07 3E-12 97.4 26.4 253 259-531 70-336 (377)
263 PRK00178 tolB translocation pr 99.0 1.9E-07 4.2E-12 98.1 27.5 206 307-526 180-397 (430)
264 KOG3914 WD repeat protein WDR4 99.0 1E-08 2.2E-13 99.9 14.9 162 286-449 64-229 (390)
265 KOG2315 Predicted translation 99.0 7.7E-08 1.7E-12 97.5 21.1 217 283-513 164-411 (566)
266 COG5170 CDC55 Serine/threonine 99.0 1.9E-08 4.2E-13 94.7 15.4 242 284-529 26-363 (460)
267 KOG2041 WD40 repeat protein [G 99.0 2E-08 4.4E-13 103.8 16.2 271 247-529 19-333 (1189)
268 KOG0309 Conserved WD40 repeat- 98.9 4.1E-09 8.8E-14 109.2 11.0 241 284-530 24-336 (1081)
269 KOG2314 Translation initiation 98.9 4.4E-08 9.4E-13 98.9 18.0 264 248-525 216-559 (698)
270 KOG4190 Uncharacterized conser 98.9 9.2E-09 2E-13 103.4 12.5 273 244-529 737-1032(1034)
271 PRK04792 tolB translocation pr 98.9 4.9E-07 1.1E-11 95.2 26.3 207 307-526 199-416 (448)
272 PF13360 PQQ_2: PQQ-like domai 98.9 9.1E-07 2E-11 84.8 26.1 221 263-497 2-237 (238)
273 KOG0280 Uncharacterized conser 98.9 1.2E-07 2.6E-12 88.9 18.8 205 305-513 45-264 (339)
274 PLN02919 haloacid dehalogenase 98.9 1.4E-06 3E-11 100.4 30.0 205 286-494 625-892 (1057)
275 COG5354 Uncharacterized protei 98.9 1E-06 2.2E-11 88.5 24.9 251 265-531 109-393 (561)
276 COG2706 3-carboxymuconate cycl 98.9 6.9E-06 1.5E-10 79.7 29.4 249 279-530 34-318 (346)
277 PRK04043 tolB translocation pr 98.9 2E-06 4.3E-11 89.5 27.9 211 265-491 170-401 (419)
278 KOG2695 WD40 repeat protein [G 98.9 9.3E-09 2E-13 98.2 9.4 165 344-512 228-402 (425)
279 KOG1064 RAVE (regulator of V-A 98.9 3.2E-08 7E-13 111.4 14.6 178 341-531 2181-2364(2439)
280 PF07433 DUF1513: Protein of u 98.8 4.8E-06 1E-10 80.8 27.1 231 287-524 7-277 (305)
281 KOG1334 WD40 repeat protein [G 98.8 8.4E-09 1.8E-13 102.5 8.3 168 362-531 134-310 (559)
282 KOG1645 RING-finger-containing 98.8 1.4E-07 2.9E-12 92.1 15.7 259 266-530 175-458 (463)
283 PRK11138 outer membrane biogen 98.8 3.6E-06 7.9E-11 87.3 26.7 253 261-530 127-391 (394)
284 PF13360 PQQ_2: PQQ-like domai 98.8 4.5E-06 9.7E-11 79.9 25.5 215 305-531 2-228 (238)
285 KOG4714 Nucleoporin [Nuclear s 98.8 3.3E-08 7.1E-13 91.2 9.5 185 341-531 48-252 (319)
286 KOG1275 PAB-dependent poly(A) 98.8 1.1E-07 2.5E-12 101.0 14.7 185 295-488 146-340 (1118)
287 PF00400 WD40: WD domain, G-be 98.8 2.4E-08 5.2E-13 66.6 6.4 39 274-312 1-39 (39)
288 KOG3914 WD repeat protein WDR4 98.8 1.1E-07 2.5E-12 92.8 13.2 155 372-531 64-221 (390)
289 KOG4714 Nucleoporin [Nuclear s 98.7 9.9E-08 2.1E-12 88.1 11.3 165 277-444 82-255 (319)
290 KOG1912 WD40 repeat protein [G 98.7 1.7E-06 3.6E-11 90.9 20.4 245 283-530 14-301 (1062)
291 PF15492 Nbas_N: Neuroblastoma 98.7 4.3E-06 9.3E-11 78.9 20.8 202 284-503 43-272 (282)
292 KOG0309 Conserved WD40 repeat- 98.7 9E-08 2E-12 99.5 9.8 211 276-491 106-340 (1081)
293 KOG0882 Cyclophilin-related pe 98.7 2.4E-07 5.2E-12 91.6 12.3 241 256-498 22-313 (558)
294 PF04762 IKI3: IKI3 family; I 98.7 1.6E-05 3.4E-10 90.2 28.5 239 283-530 74-376 (928)
295 KOG1275 PAB-dependent poly(A) 98.7 9.9E-07 2.2E-11 94.1 17.3 178 341-530 148-339 (1118)
296 KOG1832 HIV-1 Vpr-binding prot 98.6 2.3E-08 5E-13 105.6 4.8 215 275-512 1092-1311(1516)
297 COG5354 Uncharacterized protei 98.6 3.8E-06 8.1E-11 84.5 19.9 238 280-530 28-303 (561)
298 KOG1912 WD40 repeat protein [G 98.6 2.8E-06 6.1E-11 89.2 19.4 235 250-491 23-305 (1062)
299 KOG2314 Translation initiation 98.6 4.2E-06 9E-11 84.9 19.7 224 287-522 213-465 (698)
300 COG4946 Uncharacterized protei 98.6 1.6E-05 3.6E-10 79.3 22.9 122 281-405 356-482 (668)
301 KOG4532 WD40-like repeat conta 98.6 5E-06 1.1E-10 77.3 17.0 168 341-512 85-260 (344)
302 COG4946 Uncharacterized protei 98.5 9.3E-06 2E-10 81.0 19.7 175 292-479 327-507 (668)
303 KOG2041 WD40 repeat protein [G 98.5 1.5E-06 3.2E-11 90.4 14.5 236 284-525 14-280 (1189)
304 PRK04043 tolB translocation pr 98.5 0.0001 2.3E-09 76.7 27.9 160 349-522 212-386 (419)
305 PF00400 WD40: WD domain, G-be 98.5 3.1E-07 6.7E-12 61.1 5.8 39 492-531 1-39 (39)
306 COG2706 3-carboxymuconate cycl 98.5 0.00012 2.5E-09 71.4 25.0 210 305-522 15-262 (346)
307 KOG2066 Vacuolar assembly/sort 98.4 7E-06 1.5E-10 86.9 16.5 188 284-490 39-233 (846)
308 PF15492 Nbas_N: Neuroblastoma 98.4 0.00024 5.3E-09 67.2 24.9 223 289-531 2-257 (282)
309 PRK11138 outer membrane biogen 98.4 5.5E-05 1.2E-09 78.5 23.1 251 261-531 76-351 (394)
310 KOG2114 Vacuolar assembly/sort 98.4 3.8E-05 8.3E-10 82.0 20.7 209 286-503 27-257 (933)
311 KOG0882 Cyclophilin-related pe 98.4 2.4E-06 5.3E-11 84.6 10.7 212 283-498 8-239 (558)
312 PF04762 IKI3: IKI3 family; I 98.4 0.00014 3.1E-09 82.6 26.3 202 283-490 208-456 (928)
313 KOG1920 IkappaB kinase complex 98.3 0.00011 2.4E-09 81.3 23.5 236 285-529 69-361 (1265)
314 KOG2695 WD40 repeat protein [G 98.3 1.3E-06 2.8E-11 83.9 6.7 138 386-530 228-373 (425)
315 KOG2066 Vacuolar assembly/sort 98.3 4.1E-05 8.9E-10 81.2 18.4 174 256-443 51-233 (846)
316 PF08450 SGL: SMP-30/Gluconola 98.2 0.00089 1.9E-08 64.6 25.2 180 339-531 11-211 (246)
317 KOG1008 Uncharacterized conser 98.1 2E-06 4.3E-11 88.7 4.6 202 286-490 58-275 (783)
318 KOG2114 Vacuolar assembly/sort 98.1 0.00016 3.4E-09 77.4 18.1 189 339-531 34-241 (933)
319 cd00216 PQQ_DH Dehydrogenases 98.1 0.0016 3.6E-08 69.4 25.5 256 261-531 68-422 (488)
320 PF06433 Me-amine-dh_H: Methyl 98.1 0.0064 1.4E-07 60.1 26.9 257 264-531 17-318 (342)
321 PF03178 CPSF_A: CPSF A subuni 98.0 0.00096 2.1E-08 67.2 21.7 216 306-529 2-261 (321)
322 KOG1008 Uncharacterized conser 98.0 1.7E-06 3.6E-11 89.3 1.6 185 340-531 70-273 (783)
323 PF08553 VID27: VID27 cytoplas 98.0 0.00041 8.8E-09 76.2 19.6 144 296-442 493-646 (794)
324 COG5170 CDC55 Serine/threonine 98.0 3.6E-05 7.8E-10 73.1 10.0 190 339-531 37-307 (460)
325 PRK02888 nitrous-oxide reducta 98.0 0.00079 1.7E-08 71.5 19.9 201 292-503 200-427 (635)
326 PF06433 Me-amine-dh_H: Methyl 97.9 0.0092 2E-07 59.0 25.7 231 259-500 62-330 (342)
327 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.007 1.5E-07 56.7 23.2 142 296-442 23-164 (354)
328 COG3391 Uncharacterized conser 97.9 0.024 5.2E-07 58.4 30.3 248 266-521 13-270 (381)
329 COG3391 Uncharacterized conser 97.9 0.0079 1.7E-07 62.0 26.6 219 286-512 75-308 (381)
330 PRK02888 nitrous-oxide reducta 97.9 0.0032 6.9E-08 67.0 23.6 144 379-531 201-402 (635)
331 PF11768 DUF3312: Protein of u 97.9 0.00048 1E-08 71.4 17.0 74 368-444 257-330 (545)
332 KOG3617 WD40 and TPR repeat-co 97.9 0.00048 1E-08 73.5 17.0 256 245-512 62-365 (1416)
333 PF11768 DUF3312: Protein of u 97.9 0.00037 8E-09 72.2 16.0 110 374-490 209-329 (545)
334 COG0823 TolB Periplasmic compo 97.9 0.0029 6.2E-08 65.8 22.4 228 274-512 182-423 (425)
335 PF07433 DUF1513: Protein of u 97.9 0.0067 1.4E-07 59.2 22.8 187 340-531 17-245 (305)
336 PF06977 SdiA-regulated: SdiA- 97.9 0.0086 1.9E-07 57.4 23.4 204 278-487 15-247 (248)
337 cd00216 PQQ_DH Dehydrogenases 97.8 0.012 2.7E-07 62.8 27.1 233 260-500 116-434 (488)
338 KOG3617 WD40 and TPR repeat-co 97.8 0.00033 7.2E-09 74.7 14.4 109 288-400 19-131 (1416)
339 PF04841 Vps16_N: Vps16, N-ter 97.8 0.012 2.6E-07 61.2 25.6 191 307-512 62-269 (410)
340 KOG1645 RING-finger-containing 97.8 0.00019 4.2E-09 70.6 11.0 165 352-522 175-350 (463)
341 KOG1920 IkappaB kinase complex 97.8 0.0043 9.3E-08 69.3 21.9 193 329-530 70-319 (1265)
342 KOG3621 WD40 repeat-containing 97.7 0.00024 5.2E-09 74.7 10.8 117 328-444 33-155 (726)
343 KOG1832 HIV-1 Vpr-binding prot 97.7 3.6E-05 7.7E-10 82.2 4.7 177 329-522 1105-1285(1516)
344 PF08596 Lgl_C: Lethal giant l 97.7 0.01 2.2E-07 61.1 22.4 230 286-530 3-287 (395)
345 COG3386 Gluconolactonase [Carb 97.7 0.029 6.4E-07 55.6 24.9 226 291-524 31-277 (307)
346 smart00320 WD40 WD40 repeats. 97.7 0.00014 3E-09 46.4 5.6 39 274-312 2-40 (40)
347 PF04053 Coatomer_WDAD: Coatom 97.6 0.029 6.3E-07 58.6 25.3 221 283-530 31-259 (443)
348 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.044 9.6E-07 51.5 22.9 103 296-400 63-165 (354)
349 PF05096 Glu_cyclase_2: Glutam 97.6 0.072 1.6E-06 51.0 25.8 199 317-522 34-250 (264)
350 PF03178 CPSF_A: CPSF A subuni 97.6 0.02 4.2E-07 57.7 22.9 211 266-487 4-262 (321)
351 KOG3621 WD40 repeat-containing 97.5 0.00056 1.2E-08 72.0 10.7 143 370-512 33-180 (726)
352 PF00780 CNH: CNH domain; Int 97.5 0.079 1.7E-06 51.8 25.7 223 260-502 13-267 (275)
353 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.16 3.4E-06 54.7 28.7 184 262-448 77-338 (527)
354 KOG2444 WD40 repeat protein [G 97.5 0.00021 4.6E-09 65.6 5.6 141 384-531 32-175 (238)
355 KOG2395 Protein involved in va 97.4 0.0064 1.4E-07 62.3 16.3 142 340-489 346-499 (644)
356 KOG4499 Ca2+-binding protein R 97.4 0.033 7.2E-07 51.6 19.4 221 296-520 27-271 (310)
357 PF06977 SdiA-regulated: SdiA- 97.4 0.045 9.7E-07 52.5 21.5 197 328-530 24-247 (248)
358 PF08596 Lgl_C: Lethal giant l 97.4 0.017 3.7E-07 59.5 19.4 202 276-480 78-326 (395)
359 PF04053 Coatomer_WDAD: Coatom 97.4 0.01 2.2E-07 61.9 17.9 143 366-530 28-170 (443)
360 smart00320 WD40 WD40 repeats. 97.4 0.0006 1.3E-08 43.3 5.8 39 492-531 2-40 (40)
361 PF08553 VID27: VID27 cytoplas 97.4 0.0093 2E-07 65.8 18.0 140 343-489 497-646 (794)
362 PF05096 Glu_cyclase_2: Glutam 97.3 0.084 1.8E-06 50.6 21.9 199 275-479 34-249 (264)
363 COG3490 Uncharacterized protei 97.3 0.054 1.2E-06 51.7 20.1 226 273-499 57-319 (366)
364 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.12 2.6E-06 52.7 23.8 243 264-523 23-301 (353)
365 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.032 6.8E-07 45.9 14.4 100 287-395 2-109 (111)
366 PF02897 Peptidase_S9_N: Proly 97.1 0.4 8.7E-06 50.0 26.9 231 286-521 125-389 (414)
367 PF04841 Vps16_N: Vps16, N-ter 97.1 0.3 6.6E-06 50.8 25.2 169 265-445 62-248 (410)
368 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.061 1.3E-06 54.9 19.4 221 293-529 1-262 (353)
369 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.051 1.1E-06 44.7 14.9 98 333-438 8-109 (111)
370 COG0823 TolB Periplasmic compo 97.0 0.049 1.1E-06 56.7 18.6 138 350-496 218-364 (425)
371 KOG2395 Protein involved in va 97.0 0.026 5.6E-07 58.1 15.0 146 295-443 344-500 (644)
372 PHA02713 hypothetical protein; 97.0 0.079 1.7E-06 57.5 20.0 208 307-525 273-523 (557)
373 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.3 6.4E-06 52.7 23.4 199 296-495 69-338 (527)
374 PF00780 CNH: CNH domain; Int 96.9 0.52 1.1E-05 46.0 24.1 217 294-531 5-253 (275)
375 PHA02713 hypothetical protein; 96.8 0.14 3E-06 55.6 20.5 200 295-503 303-546 (557)
376 KOG4640 Anaphase-promoting com 96.8 0.0056 1.2E-07 63.9 8.9 91 329-423 24-115 (665)
377 PF05694 SBP56: 56kDa selenium 96.8 0.79 1.7E-05 47.0 25.6 215 274-491 52-343 (461)
378 KOG2444 WD40 repeat protein [G 96.8 0.005 1.1E-07 56.8 7.5 106 296-401 70-178 (238)
379 TIGR03074 PQQ_membr_DH membran 96.7 0.58 1.3E-05 52.4 24.9 202 296-499 194-486 (764)
380 PRK13616 lipoprotein LpqB; Pro 96.7 0.2 4.4E-06 54.4 20.4 190 284-486 349-564 (591)
381 COG3204 Uncharacterized protei 96.7 0.31 6.8E-06 47.0 18.9 163 280-445 81-265 (316)
382 PF02897 Peptidase_S9_N: Proly 96.6 0.78 1.7E-05 47.8 24.3 228 259-495 145-409 (414)
383 PF14870 PSII_BNR: Photosynthe 96.6 0.85 1.8E-05 45.1 23.9 157 367-530 141-301 (302)
384 KOG4640 Anaphase-promoting com 96.5 0.015 3.3E-07 60.8 9.7 78 371-450 21-99 (665)
385 PF14583 Pectate_lyase22: Olig 96.4 1.3 2.7E-05 45.0 28.2 255 266-530 62-378 (386)
386 PRK13616 lipoprotein LpqB; Pro 96.4 0.18 3.9E-06 54.9 17.7 175 349-530 328-522 (591)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.8 1.7E-05 47.3 21.3 43 462-504 309-351 (415)
388 PF05694 SBP56: 56kDa selenium 96.2 1.4 3.1E-05 45.1 21.6 224 255-479 89-392 (461)
389 COG3204 Uncharacterized protei 96.2 0.29 6.2E-06 47.2 15.8 160 368-527 83-257 (316)
390 KOG4441 Proteins containing BT 96.2 0.2 4.3E-06 54.5 16.9 218 295-526 284-534 (571)
391 KOG2079 Vacuolar assembly/sort 96.2 0.02 4.2E-07 63.5 9.0 98 424-526 98-198 (1206)
392 KOG1897 Damage-specific DNA bi 96.2 1.3 2.9E-05 49.3 22.5 235 284-528 629-893 (1096)
393 KOG2079 Vacuolar assembly/sort 96.2 0.019 4.1E-07 63.6 8.6 101 381-483 98-198 (1206)
394 KOG1916 Nuclear protein, conta 96.1 0.00078 1.7E-08 72.6 -1.9 100 280-382 128-236 (1283)
395 PHA03098 kelch-like protein; P 96.0 0.45 9.8E-06 51.5 18.6 191 295-493 294-514 (534)
396 PRK10115 protease 2; Provision 95.9 3.7 8.1E-05 45.8 25.7 112 285-399 127-254 (686)
397 COG3386 Gluconolactonase [Carb 95.9 1.7 3.7E-05 43.2 20.5 183 338-531 35-241 (307)
398 COG3490 Uncharacterized protei 95.7 1.3 2.7E-05 42.7 17.5 161 315-479 57-244 (366)
399 KOG1897 Damage-specific DNA bi 95.6 5 0.00011 45.0 26.7 142 350-494 470-619 (1096)
400 PF12894 Apc4_WD40: Anaphase-p 95.5 0.049 1.1E-06 37.5 5.5 34 284-318 11-44 (47)
401 PF10647 Gmad1: Lipoprotein Lp 95.4 1.5 3.3E-05 42.4 17.7 145 372-523 25-185 (253)
402 PHA03098 kelch-like protein; P 95.3 0.74 1.6E-05 49.8 17.2 148 341-494 296-468 (534)
403 PF14727 PHTB1_N: PTHB1 N-term 95.3 4.3 9.4E-05 42.1 27.7 145 296-442 37-203 (418)
404 PF15390 DUF4613: Domain of un 95.2 1.1 2.4E-05 47.2 16.7 154 284-444 19-187 (671)
405 TIGR03548 mutarot_permut cycli 95.2 3.1 6.8E-05 41.7 20.0 104 341-445 74-196 (323)
406 KOG4441 Proteins containing BT 95.1 2.2 4.8E-05 46.4 19.7 196 287-492 325-548 (571)
407 COG3823 Glutamine cyclotransfe 95.0 1.8 3.9E-05 39.8 15.5 197 318-522 36-248 (262)
408 PF12894 Apc4_WD40: Anaphase-p 95.0 0.082 1.8E-06 36.4 5.4 33 460-493 11-43 (47)
409 PF08728 CRT10: CRT10; InterP 94.8 1.5 3.2E-05 48.1 17.1 102 340-442 114-245 (717)
410 KOG3630 Nuclear pore complex, 94.7 0.24 5.2E-06 55.6 11.0 132 344-478 118-261 (1405)
411 PHA02790 Kelch-like protein; P 94.5 3.8 8.2E-05 43.7 19.4 145 295-445 271-425 (480)
412 PF14727 PHTB1_N: PTHB1 N-term 94.4 7.3 0.00016 40.5 28.4 266 257-529 40-356 (418)
413 PF12234 Rav1p_C: RAVE protein 94.3 1.3 2.8E-05 48.1 15.3 100 341-442 42-155 (631)
414 TIGR03074 PQQ_membr_DH membran 94.3 11 0.00025 42.4 23.2 191 341-531 195-475 (764)
415 PF14655 RAB3GAP2_N: Rab3 GTPa 94.2 0.61 1.3E-05 48.2 12.1 95 273-367 296-407 (415)
416 PF14583 Pectate_lyase22: Olig 94.2 7.4 0.00016 39.6 26.0 244 270-524 16-303 (386)
417 KOG2280 Vacuolar assembly/sort 94.1 2.7 5.8E-05 45.7 16.8 212 285-512 44-269 (829)
418 KOG1916 Nuclear protein, conta 94.1 0.091 2E-06 57.4 6.0 159 367-531 129-321 (1283)
419 TIGR02604 Piru_Ver_Nterm putat 94.0 2.7 5.9E-05 43.0 16.6 146 371-522 14-202 (367)
420 PF15390 DUF4613: Domain of un 94.0 1.6 3.5E-05 46.1 14.4 150 371-531 20-184 (671)
421 PF12234 Rav1p_C: RAVE protein 93.9 1.7 3.6E-05 47.3 14.9 115 371-489 30-155 (631)
422 PF07995 GSDH: Glucose / Sorbo 93.8 8.3 0.00018 38.9 25.1 237 286-528 3-330 (331)
423 PF03022 MRJP: Major royal jel 93.8 7.6 0.00016 38.3 20.2 171 307-479 35-254 (287)
424 PHA02790 Kelch-like protein; P 93.7 3.8 8.2E-05 43.7 17.6 171 341-524 273-456 (480)
425 COG5167 VID27 Protein involved 93.6 0.74 1.6E-05 47.6 11.1 145 295-443 478-632 (776)
426 PF10168 Nup88: Nuclear pore c 93.6 7.8 0.00017 43.3 20.0 75 371-446 85-182 (717)
427 COG3823 Glutamine cyclotransfe 93.4 6.3 0.00014 36.4 15.7 123 275-402 35-160 (262)
428 PF14761 HPS3_N: Hermansky-Pud 93.4 6.6 0.00014 36.5 16.2 141 342-488 30-212 (215)
429 TIGR03547 muta_rot_YjhT mutatr 93.4 9.8 0.00021 38.5 19.6 43 392-434 168-210 (346)
430 KOG3630 Nuclear pore complex, 93.4 0.37 8E-06 54.2 9.2 141 286-430 102-260 (1405)
431 PF14870 PSII_BNR: Photosynthe 92.8 11 0.00024 37.3 23.6 228 283-527 15-255 (302)
432 PLN02193 nitrile-specifier pro 92.8 15 0.00034 38.9 23.0 150 341-494 230-414 (470)
433 PF05935 Arylsulfotrans: Aryls 92.8 13 0.00028 39.6 19.7 150 348-502 126-313 (477)
434 PLN02153 epithiospecifier prot 92.7 12 0.00027 37.7 23.2 147 295-445 32-227 (341)
435 COG5167 VID27 Protein involved 92.5 2.6 5.7E-05 43.7 13.0 140 341-490 481-632 (776)
436 COG1520 FOG: WD40-like repeat 92.0 16 0.00035 37.3 24.0 197 295-501 68-279 (370)
437 PF07250 Glyoxal_oxid_N: Glyox 91.8 3.9 8.5E-05 39.1 12.8 147 352-500 48-207 (243)
438 PF08728 CRT10: CRT10; InterP 91.7 5.3 0.00011 44.0 15.1 108 424-531 113-244 (717)
439 PF02333 Phytase: Phytase; In 91.4 18 0.0004 36.9 22.8 196 329-531 57-288 (381)
440 COG5276 Uncharacterized conser 91.2 16 0.00034 35.7 21.3 141 341-492 97-243 (370)
441 PF14781 BBS2_N: Ciliary BBSom 91.2 8.9 0.00019 32.8 13.4 116 289-406 3-131 (136)
442 PF10313 DUF2415: Uncharacteri 90.6 1.1 2.3E-05 30.1 5.5 31 285-315 1-34 (43)
443 PF13449 Phytase-like: Esteras 90.6 20 0.00044 36.0 18.0 149 369-519 18-230 (326)
444 KOG4659 Uncharacterized conser 90.5 26 0.00055 40.9 19.0 80 280-362 343-431 (1899)
445 TIGR03548 mutarot_permut cycli 90.2 16 0.00036 36.4 16.6 64 341-404 125-198 (323)
446 PRK13684 Ycf48-like protein; P 90.1 23 0.00049 35.8 25.0 154 370-531 172-329 (334)
447 PRK14131 N-acetylneuraminic ac 90.1 25 0.00054 36.1 19.4 40 393-433 190-230 (376)
448 KOG4499 Ca2+-binding protein R 90.0 7.9 0.00017 36.4 12.4 92 286-380 159-263 (310)
449 PRK10115 protease 2; Provision 89.9 37 0.00081 38.0 29.4 227 259-493 148-397 (686)
450 PF10313 DUF2415: Uncharacteri 89.4 1.3 2.9E-05 29.6 5.2 32 371-402 1-35 (43)
451 COG4590 ABC-type uncharacteriz 89.3 2.5 5.4E-05 43.2 9.3 172 271-446 207-389 (733)
452 KOG2280 Vacuolar assembly/sort 89.0 13 0.00029 40.6 15.0 176 265-448 65-251 (829)
453 TIGR03606 non_repeat_PQQ dehyd 89.0 14 0.00031 38.8 15.2 116 366-481 25-166 (454)
454 KOG2377 Uncharacterized conser 89.0 9.7 0.00021 39.2 13.2 140 374-518 26-168 (657)
455 TIGR02604 Piru_Ver_Nterm putat 88.3 22 0.00048 36.4 16.1 143 285-434 14-204 (367)
456 PF10168 Nup88: Nuclear pore c 87.9 10 0.00022 42.4 14.0 69 462-531 86-177 (717)
457 PF07569 Hira: TUP1-like enhan 87.8 3.3 7.2E-05 39.0 8.9 63 467-531 17-93 (219)
458 PF07569 Hira: TUP1-like enhan 87.4 3.2 6.9E-05 39.2 8.5 73 419-492 16-97 (219)
459 KOG2247 WD40 repeat-containing 87.3 0.11 2.4E-06 53.2 -1.5 143 374-526 38-181 (615)
460 PF07995 GSDH: Glucose / Sorbo 86.7 13 0.00029 37.4 13.1 107 372-480 3-133 (331)
461 COG5276 Uncharacterized conser 86.4 34 0.00075 33.4 24.0 152 283-445 85-243 (370)
462 TIGR02276 beta_rpt_yvtn 40-res 86.3 3.7 8E-05 26.8 6.2 40 294-333 1-41 (42)
463 PF11635 Med16: Mediator compl 86.1 58 0.0013 36.9 19.0 72 414-485 260-345 (753)
464 KOG2247 WD40 repeat-containing 86.0 0.11 2.3E-06 53.3 -2.3 143 289-436 39-181 (615)
465 TIGR03118 PEPCTERM_chp_1 conse 85.7 38 0.00083 33.3 24.5 222 286-512 24-307 (336)
466 PF10395 Utp8: Utp8 family; I 85.7 61 0.0013 35.6 23.6 234 291-531 34-303 (670)
467 PF10647 Gmad1: Lipoprotein Lp 85.5 36 0.00078 32.8 21.4 112 371-483 66-188 (253)
468 KOG2377 Uncharacterized conser 85.2 46 0.001 34.5 15.5 119 281-402 63-187 (657)
469 PLN02153 epithiospecifier prot 84.6 47 0.001 33.4 18.2 146 295-445 85-286 (341)
470 KOG1900 Nuclear pore complex, 84.3 7.2 0.00016 45.2 10.5 139 390-531 97-270 (1311)
471 PF02333 Phytase: Phytase; In 83.6 56 0.0012 33.5 24.1 200 295-498 67-299 (381)
472 PF08801 Nucleoporin_N: Nup133 83.4 20 0.00044 37.3 13.3 31 461-491 190-220 (422)
473 KOG1898 Splicing factor 3b, su 83.3 65 0.0014 36.9 16.9 133 349-489 911-1047(1205)
474 PF11715 Nup160: Nucleoporin N 82.9 6 0.00013 42.9 9.3 76 423-498 156-256 (547)
475 TIGR03118 PEPCTERM_chp_1 conse 82.9 51 0.0011 32.5 17.2 157 298-456 102-292 (336)
476 KOG4460 Nuclear pore complex, 81.8 20 0.00044 37.6 11.7 81 415-495 105-203 (741)
477 COG1520 FOG: WD40-like repeat 81.7 65 0.0014 32.9 21.8 108 341-450 69-178 (370)
478 PLN02193 nitrile-specifier pro 81.0 81 0.0017 33.5 21.1 149 341-494 177-355 (470)
479 KOG1900 Nuclear pore complex, 80.1 23 0.00049 41.4 12.4 153 287-444 81-273 (1311)
480 PRK13684 Ycf48-like protein; P 79.8 72 0.0016 32.2 22.8 114 406-528 165-283 (334)
481 KOG1898 Splicing factor 3b, su 79.3 1.3E+02 0.0028 34.8 18.2 167 351-528 854-1043(1205)
482 KOG1983 Tomosyn and related SN 78.8 35 0.00076 39.8 13.9 31 285-315 36-66 (993)
483 PF10433 MMS1_N: Mono-function 78.6 99 0.0022 33.1 24.1 228 293-530 219-473 (504)
484 TIGR02276 beta_rpt_yvtn 40-res 78.4 11 0.00024 24.5 6.1 40 470-510 1-41 (42)
485 PF11635 Med16: Mediator compl 77.8 1.3E+02 0.0029 34.1 22.6 67 461-528 260-345 (753)
486 PF12657 TFIIIC_delta: Transcr 77.7 14 0.0003 33.3 8.4 104 289-397 9-118 (173)
487 PF10214 Rrn6: RNA polymerase 77.4 1.4E+02 0.003 34.1 24.7 157 282-444 77-277 (765)
488 KOG4460 Nuclear pore complex, 77.3 29 0.00064 36.5 11.2 98 286-407 105-205 (741)
489 PF08801 Nucleoporin_N: Nup133 77.3 90 0.002 32.5 15.6 27 504-531 191-217 (422)
490 KOG1896 mRNA cleavage and poly 76.3 1.6E+02 0.0036 34.5 19.5 193 306-505 1004-1236(1366)
491 PRK14131 N-acetylneuraminic ac 75.9 98 0.0021 31.7 17.6 40 350-390 189-230 (376)
492 TIGR03547 muta_rot_YjhT mutatr 74.9 97 0.0021 31.1 17.9 41 350-391 168-210 (346)
493 PF03022 MRJP: Major royal jel 74.6 91 0.002 30.7 18.1 159 350-512 34-243 (287)
494 PF14781 BBS2_N: Ciliary BBSom 74.5 55 0.0012 28.1 13.2 113 377-498 5-133 (136)
495 PLN00033 photosystem II stabil 74.3 1.1E+02 0.0024 31.6 26.3 151 373-530 241-396 (398)
496 COG3292 Predicted periplasmic 74.0 1.3E+02 0.0029 32.3 18.0 198 285-491 290-492 (671)
497 KOG3616 Selective LIM binding 73.7 90 0.0019 34.5 13.9 68 284-356 14-81 (1636)
498 PF14779 BBS1: Ciliary BBSome 72.8 22 0.00048 34.2 8.6 59 297-355 196-255 (257)
499 KOG0918 Selenium-binding prote 72.5 1.2E+02 0.0026 31.1 14.2 166 299-480 222-408 (476)
500 PF10395 Utp8: Utp8 family; I 72.0 1.6E+02 0.0035 32.5 18.1 157 284-445 129-307 (670)
No 1
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.4e-68 Score=516.34 Aligned_cols=396 Identities=47% Similarity=0.830 Sum_probs=345.4
Q ss_pred cccccCCCCceeeeCcccccccCCCCCCCCCCCCcccccccccccccceeecccCchhhhhhhccceeeeeeeCCCCCCc
Q 009597 81 QSRPIDPSQHFIAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGNNY 160 (531)
Q Consensus 81 ~~~~~~~~~~~~~~n~~~~~~~~p~~gp~~p~~~~~~~~~~~n~~~g~~e~~~~~~~~f~~q~~~~~~~g~~~~p~~~~~ 160 (531)
....+||+.++|.|||+|++|++|+.||+|||++.++ .+|
T Consensus 41 ~v~~~dp~~ke~~~np~~~~l~~p~~Gp~n~f~s~q~----------------------------------------~~~ 80 (503)
T KOG0282|consen 41 QVAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQQ----------------------------------------TRF 80 (503)
T ss_pred cccccCCcchhhccCCchhhhcccccCCCCcchhhhh----------------------------------------hhh
Confidence 4568999999999999999999999999999986543 458
Q ss_pred cCchhhhhhcCCcceeeccccHHHHHHHHHHhhhhhccCCCccCCCCCCCCCCcCccccccCCCCCCCCcccccccccH-
Q 009597 161 VGDFEALEKNNGVSVYNIRQNEQKKRKLEKKQEAEEVDGTAVDVDPAEFNNPATDTWLMKNRKSPWAGKKEGVQTELSE- 239 (531)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (531)
||++..++++.|.+++++.++++++||+++. ++.+..+++.|||..+.++..-++...+++.+..+
T Consensus 81 vg~~~~ae~~~g~t~fe~~~k~~~~Rk~~~~-------------dd~~~idg~~gpWsr~~dE~~vak~~~~~~~~~de~ 147 (503)
T KOG0282|consen 81 VGDVKKAEAEKGVSLFESKKKGGEQRKRVGN-------------DDSADIDGYSGPWSRYVDEKTVAKPTPEEQKQMDEI 147 (503)
T ss_pred ccchhhhhcccCceeecccccccchhhhccC-------------CChhhccCCCCCcccccccccccCCCcchhhhhhhh
Confidence 9999999999999999998777666655531 23455788999999887433222222111110000
Q ss_pred ----HHH------------------------------------------------------------HHHHHHHHhh-hh
Q 009597 240 ----EQK------------------------------------------------------------KYAEEYAKKK-EE 254 (531)
Q Consensus 240 ----~~~------------------------------------------------------------~~~~~~~~~~-~~ 254 (531)
+++ +.+.++.+-+ ..
T Consensus 148 ~~k~~e~~~~~e~~~~~~ee~s~~h~k~~~dyq~r~~l~~P~dv~vnlR~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~ 227 (503)
T KOG0282|consen 148 VKKRQEKKKEKEDSEHMAEESSTLHGKSLFDYQGRSYLQKPKDVGVNLREERCYLPKKLSHNLSGHTKGVSAIQWFPKKG 227 (503)
T ss_pred hhhhhhhccccccccccccccccccccchhhccccccccCCcccCCccccceeeccHhheeeccCCccccchhhhcccee
Confidence 000 0001111111 23
Q ss_pred ccCCCCCCCceeeeeeccc-CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEE
Q 009597 255 KGNAGGEKGEHVEDKSTFH-GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333 (531)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~-~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~ 333 (531)
.++.+++-++.|++|...+ ++|+++|.||..+|.+++|+++|..|+|+|.|+.|++||+++|+++..|..+..+.|+.+
T Consensus 228 hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf 307 (503)
T KOG0282|consen 228 HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKF 307 (503)
T ss_pred eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeec
Confidence 3345677889999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC
Q 009597 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 413 (531)
Q Consensus 334 ~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 413 (531)
++++ +++|++|+.|+.|+.||+++++++++|..|.+.|..|.|.++|++|+++++|++++||+.+.+..++.+.....
T Consensus 308 ~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~ 385 (503)
T KOG0282|consen 308 HPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEM 385 (503)
T ss_pred CCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhh
Confidence 9987 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 009597 414 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 493 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 493 (531)
+.++++..+|+++++++.+.|+.|.+|.+....++...+.|.||..+++.+.+.|||||.+|++|+.||.+++||+++.+
T Consensus 386 hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 386 HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 494 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 494 ~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
++..+++|.++|+.+.|||...+.|||||+||.|++||
T Consensus 466 l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999999999999999999997
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=317.88 Aligned_cols=273 Identities=24% Similarity=0.354 Sum_probs=249.3
Q ss_pred HHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccC--CCEEEEEecCCeEEEEeCCCCcEEEEccCCC
Q 009597 249 AKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFSTGK 326 (531)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspd--g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~ 326 (531)
..+.+.+.+++++-+|.+++|+......+.+|.||+..|.++.|+|. +..|+||+.||++++|++++...+..+..+.
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~ 261 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL 261 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch
Confidence 34567778889999999999999999999999999999999999996 6689999999999999999988888886443
Q ss_pred -cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEE
Q 009597 327 -IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 405 (531)
Q Consensus 327 -~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~ 405 (531)
.+..+.|+|+ +.+|.+++.|.+-++||++++..+....+|...|.+|+|.++|..++||+.|..-+|||++++.++
T Consensus 262 ~RVs~VafHPs---G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i 338 (459)
T KOG0272|consen 262 ARVSRVAFHPS---GKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI 338 (459)
T ss_pred hhheeeeecCC---CceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEE
Confidence 3344566663 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC-CCCEEEEEeCCCcE
Q 009597 406 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKC 484 (531)
Q Consensus 406 ~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I 484 (531)
..+.. |...|.+++|+|+|..|++|+.|++++|||++.... +..+.+|. ..|..+.|+| .|.+|++++.|+++
T Consensus 339 m~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~---ly~ipAH~--nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 339 MFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE---LYTIPAHS--NLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred EEecc-cccceeeEeECCCceEEeecCCCCcEEEeeeccccc---ceeccccc--chhhheEecccCCeEEEEcccCcce
Confidence 88876 999999999999999999999999999999998755 45677775 5589999998 79999999999999
Q ss_pred EEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 485 WFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 485 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+||..+++.+++++.+|.+.|.++.+++ ++..++|++.|.+||+|.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 9999999999999999999999999999 889999999999999994
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-39 Score=307.52 Aligned_cols=279 Identities=20% Similarity=0.321 Sum_probs=244.4
Q ss_pred HHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC
Q 009597 246 EEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 325 (531)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~ 325 (531)
-++..++.++.+++|+.+.+++.|+..+..++.+.+||..-|.||+|+|||+.||+|+.||+|++||.++|+++..--.+
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g 198 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG 198 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999887665556
Q ss_pred CcceEEEEccCC----CCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC
Q 009597 326 KIPYVVKLNPDD----DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 401 (531)
Q Consensus 326 ~~~~~~~~~~~~----~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~ 401 (531)
|...+..+.+.+ +...+|++++.||.|+|||+..+.++..+.+|..+|+|+.|--+ .+++++|.|++|++|+...
T Consensus 199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccc
Confidence 655555544432 23468999999999999999999999999999999999999754 4899999999999999999
Q ss_pred CeEEEEeeCCCCCCccEEEEe-----------CCCC-------------------------EEEEEEcCCeEEEEEcCCc
Q 009597 402 PVVIKYISEPHMHSMPSISLH-----------PNTN-------------------------WLAAQSLDNQILIYSTRER 445 (531)
Q Consensus 402 ~~~~~~~~~~~~~~v~~v~~s-----------p~~~-------------------------~l~s~s~Dg~I~iwd~~~~ 445 (531)
+..++.+. +|.+.|..++++ |.++ .|++|+.|.++.+|+-...
T Consensus 278 G~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~ 356 (480)
T KOG0271|consen 278 GKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS 356 (480)
T ss_pred hhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc
Confidence 88877775 488889888876 3233 4999999999999986543
Q ss_pred ceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCC
Q 009597 446 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 525 (531)
Q Consensus 446 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg 525 (531)
. ..+....+|. ..|+.+.||||+++|++++-|..|++||-++|+.+.+|.+|-+.|..++|+. +.++|++||.|.
T Consensus 357 k--kpi~rmtgHq--~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDs 431 (480)
T KOG0271|consen 357 K--KPITRMTGHQ--ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDS 431 (480)
T ss_pred c--cchhhhhchh--hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCc
Confidence 2 3345677885 4599999999999999999999999999999999999999999999999999 889999999999
Q ss_pred CEEeeC
Q 009597 526 LIKYWD 531 (531)
Q Consensus 526 ~I~iWD 531 (531)
+|++||
T Consensus 432 TLKvw~ 437 (480)
T KOG0271|consen 432 TLKVWD 437 (480)
T ss_pred eEEEEE
Confidence 999997
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-38 Score=301.67 Aligned_cols=278 Identities=24% Similarity=0.443 Sum_probs=245.7
Q ss_pred HHHHHHHHhhhhccCCCCCCCceeeeeecccCeee-EEecCccCceEEEEEcc-----CCCEEEEEecCCeEEEEeCCCC
Q 009597 243 KYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCM-RTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWDTETG 316 (531)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~gH~~~V~~l~fsp-----dg~~l~s~s~Dg~I~vWd~~t~ 316 (531)
.-+-+++++++++.+++|..++.|..|+..+|+++ +.|.||+..|++|+|.| ..++|++++.||.|+|||+..+
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 34457789999999999999999999999888765 78999999999999987 5678999999999999999999
Q ss_pred cEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEe-----------cCC---
Q 009597 317 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-----------DSN--- 382 (531)
Q Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~s-----------p~~--- 382 (531)
.++..+. +|...+.++.+-+ ..++++|+.|++|++|+...|.+.+++++|...|+.|+.+ |.+
T Consensus 238 ~~~~~ls-gHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 238 TCVRTLS-GHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred eEEEEec-cCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccC
Confidence 9999884 4444555555543 3689999999999999999999999999999999999887 222
Q ss_pred ----------------------CEEEEEeCCCCEEEEEcCCCe-EEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEE
Q 009597 383 ----------------------RRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439 (531)
Q Consensus 383 ----------------------~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~i 439 (531)
.+|++|++|.++.+|+-.... ++... .+|..-|..+.|+|+++++++++.|..|++
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKL 393 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeecccceee
Confidence 359999999999999976554 44444 459999999999999999999999999999
Q ss_pred EEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEE
Q 009597 440 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 519 (531)
Q Consensus 440 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~ 519 (531)
|+.++++.+ ..|.||... |..++|+.|.++|++|+.|.++++||+++.++...+.+|...|.++.|+| ++..++
T Consensus 394 W~g~tGk~l---asfRGHv~~--VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~ 467 (480)
T KOG0271|consen 394 WDGRTGKFL---ASFRGHVAA--VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVA 467 (480)
T ss_pred eeCCCcchh---hhhhhccce--eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceee
Confidence 999999655 678889644 88899999999999999999999999999999999999999999999999 888999
Q ss_pred EEeCCCCEEee
Q 009597 520 TCGWDGLIKYW 530 (531)
Q Consensus 520 t~s~Dg~I~iW 530 (531)
+|+.|..+++|
T Consensus 468 sggkdkv~~lw 478 (480)
T KOG0271|consen 468 SGGKDKVLRLW 478 (480)
T ss_pred cCCCceEEEee
Confidence 99999999999
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-37 Score=298.80 Aligned_cols=251 Identities=22% Similarity=0.394 Sum_probs=226.9
Q ss_pred CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-cceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 274 ~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
..+...-.|-..+|..+.|++|+..|+|||.+|.++||+..+...+.+|..+. ....+.|+|.. ....+++|+.||++
T Consensus 165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTV 243 (459)
T ss_pred hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC-CccceeeeccCCce
Confidence 34445556788999999999999999999999999999999999999986543 34566677764 34679999999999
Q ss_pred EEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEE
Q 009597 353 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s 432 (531)
++|++.+..+++.+.+|...|..++|+|+|++|+|++.|.+-++||+++...+... .+|...|.+++|+|+|.++++|+
T Consensus 244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCceeeccC
Confidence 99999999999999999999999999999999999999999999999998776555 56999999999999999999999
Q ss_pred cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEec
Q 009597 433 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 433 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p 512 (531)
.|..-+|||++++.++ ..+.+|. ..|..++|+|+|..|++|+.|++++|||++..+.+.++.+|..-|+.|.|+|
T Consensus 323 lD~~~RvWDlRtgr~i---m~L~gH~--k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCI---MFLAGHI--KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred ccchhheeecccCcEE---EEecccc--cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence 9999999999999665 5677885 4588999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCEEeeC
Q 009597 513 LEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 513 ~~~~~l~t~s~Dg~I~iWD 531 (531)
..+.+|+|||.|++++||.
T Consensus 398 ~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred cCCeEEEEcccCcceeeec
Confidence 8999999999999999994
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.3e-36 Score=274.40 Aligned_cols=280 Identities=20% Similarity=0.303 Sum_probs=250.5
Q ss_pred HHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC--c---EE
Q 009597 245 AEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--Q---VI 319 (531)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~--~---~i 319 (531)
+.++.+..+.+.+.+++.++.+.+|+.++...++-+.--+.-|..++|+|+|+++|+|+.|+...||++.+. + .+
T Consensus 58 i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v 137 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRV 137 (343)
T ss_pred eeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccccee
Confidence 345678888899999999999999999999999999999999999999999999999999999999999754 2 22
Q ss_pred EEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEE
Q 009597 320 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWE 398 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd 398 (531)
...-.+|..+..++.+.++ ..|++++.|.++.+||+++++.++.|.+|.+.|.++.++| +++.|++|+.|++.+|||
T Consensus 138 ~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD 215 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWD 215 (343)
T ss_pred eeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeee
Confidence 3333566666655555543 5699999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE
Q 009597 399 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 478 (531)
Q Consensus 399 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 478 (531)
++.+.+.+.+. +|...|.+++|.|+|.-|++|+.|+++++||++....+. .+........|++++||..|++|++|
T Consensus 216 ~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a---~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 216 VRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA---VYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred ccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe---eeccCcccCCceeEEEcccccEEEee
Confidence 99998888876 499999999999999999999999999999999976653 34444445669999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 479 DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 479 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
..|.++.+||.-.++.+..+.+|...|.++..+| ++..|+|||+|.+||||.
T Consensus 292 y~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 292 YDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999 888999999999999995
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.7e-34 Score=254.97 Aligned_cols=269 Identities=18% Similarity=0.337 Sum_probs=236.5
Q ss_pred ccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc--EEEEccCC-CcceEE
Q 009597 255 KGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--VIRTFSTG-KIPYVV 331 (531)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~--~i~~~~~~-~~~~~~ 331 (531)
-++++++.+-+|+.|...+|+|.+++....+.|..|.+.|+++.|++++. -.||+||+.++. .+.+|..+ +.+..+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 35678899999999999999999999988889999999999999999886 589999998875 57777665 566777
Q ss_pred EEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC
Q 009597 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 411 (531)
Q Consensus 332 ~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 411 (531)
.|..+ ++.+++|+.||+++|||++...+.+.|. |..+|+++..+|+...|++|..+|.|+|||+....+...+...
T Consensus 90 gF~~d---grWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 90 GFQCD---GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEeec---CeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 77764 4799999999999999999977766666 6799999999999999999999999999999998777666655
Q ss_pred CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcc---eeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009597 412 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF---QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 488 (531)
Q Consensus 412 ~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~---~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd 488 (531)
...+|.++...|+|.+|+.+...|.+++|++-... .+..+..+..| .+++..+.+|||+++|++++.|.+++||+
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 67899999999999999999999999999987643 33444556666 57799999999999999999999999999
Q ss_pred CCCC-eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 489 WKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 489 ~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
..+. +....+.+|...+..++|+. ++.+|+|++.|+.+++||
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWD 286 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecc
Confidence 9887 77778889999999999999 889999999999999997
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-33 Score=290.32 Aligned_cols=250 Identities=25% Similarity=0.482 Sum_probs=219.5
Q ss_pred ccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc--------E-----------------------EE
Q 009597 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--------V-----------------------IR 320 (531)
Q Consensus 272 ~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~--------~-----------------------i~ 320 (531)
...-|+.++..-...++|..|++|+++||.|-.|..|++|.+...+ . ..
T Consensus 366 lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 366 LPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 3456777787777899999999999999999999999999886311 0 11
Q ss_pred Ec-cCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEc
Q 009597 321 TF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 399 (531)
Q Consensus 321 ~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~ 399 (531)
++ .+..+++.+.|.|+ .++|++++.|++|++|.+.+..++..+.+|..+|+++.|+|.|-+|+|+|.|++.++|..
T Consensus 446 ~L~GH~GPVyg~sFsPd---~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPD---RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred EeecCCCceeeeeeccc---ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 11 12233455556654 368999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe
Q 009597 400 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 479 (531)
Q Consensus 400 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 479 (531)
....+.+.+. +|...|.|+.|||+..|+++|+.|.+|++||+.++.. ++.|.||. +.|.+++|||+|++|++|+
T Consensus 523 d~~~PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~--~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 523 DHNKPLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---VRIFTGHK--GPVTALAFSPCGRYLASGD 596 (707)
T ss_pred ccCCchhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcE---EEEecCCC--CceEEEEEcCCCceEeecc
Confidence 9877776665 5999999999999999999999999999999999855 47788985 6699999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 480 GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 480 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.||.|.+||+.+++++..+.+|.+.|.++.|+. ++..||+||.|++|++||
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWD 647 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEE
Confidence 999999999999999999999999999999999 888999999999999998
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3e-32 Score=250.62 Aligned_cols=249 Identities=19% Similarity=0.324 Sum_probs=218.2
Q ss_pred cCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 273 ~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
..+..++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+...++.++... .+++.+.+.+ .++++++|+-|+..
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s-~WVMtCA~sP-Sg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS-SWVMTCAYSP-SGNFVACGGLDNKC 121 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc-eeEEEEEECC-CCCeEEecCcCcee
Confidence 345569999999999999999999999999999999999999988888775443 3444333333 34789999999999
Q ss_pred EEEECCCC------ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC-CC
Q 009597 353 VQWDMNTK------EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NT 425 (531)
Q Consensus 353 ~iwd~~t~------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~~ 425 (531)
.||++.+. ...+++.+|.+.+.|+.|.+ ...|+|+|.|.++.+||+++++.+..+. +|...|.+++++| ++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDG 199 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCC
Confidence 99999865 45677899999999999998 5579999999999999999999988876 5999999999999 99
Q ss_pred CEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecc--CC
Q 009597 426 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH--EG 503 (531)
Q Consensus 426 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--~~ 503 (531)
+.|++|+.|+..+|||++.+.+ .+.|.+|. ..|+.+.|.|+|.-+++|+.|++.++||++..+.+..+... ..
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c---~qtF~ghe--sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQC---VQTFEGHE--SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred CeEEecccccceeeeeccCcce---eEeecccc--cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 9999999999999999999844 47899995 55999999999999999999999999999999988888732 24
Q ss_pred cEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 504 VCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 504 ~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+|++++|+. .+++|++|..|.++.+||
T Consensus 275 gitSv~FS~-SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 275 GITSVAFSK-SGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred CceeEEEcc-cccEEEeeecCCceeEee
Confidence 799999999 889999999999999998
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-34 Score=268.83 Aligned_cols=272 Identities=25% Similarity=0.383 Sum_probs=243.6
Q ss_pred HhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCC-CcEEEEcc-CCCc
Q 009597 250 KKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFS-TGKI 327 (531)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~-~~~~ 327 (531)
..+...+.+.++++..+++|+.+++++.+.++||.++|.+|+|+..|++|++|+.|-.+++||.++ .++++... +.+.
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~ 195 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG 195 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccc
Confidence 456666778888999999999999999999999999999999999999999999999999999977 45555543 3455
Q ss_pred ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 009597 328 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 407 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 407 (531)
+..+.+.|.+ ..+++++.|.+|+.|++.++-++.++.+|...|..+..+.||..+++++.|.+|++|-+.+..+...
T Consensus 196 vS~V~f~P~g---d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~ 272 (406)
T KOG0295|consen 196 VSSVFFLPLG---DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE 272 (406)
T ss_pred eeeEEEEecC---CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh
Confidence 6677777764 6899999999999999999999999999999999999999999999999999999999999876655
Q ss_pred eeCCCCCCccEEEEeCC---------------CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCC
Q 009597 408 ISEPHMHSMPSISLHPN---------------TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 472 (531)
Q Consensus 408 ~~~~~~~~v~~v~~sp~---------------~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 472 (531)
+.. |.++|-|++|.|. +.++++++.|++|++||+.++.++ .++.+| ..+|+.++|+|.|
T Consensus 273 lR~-hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL---~tL~gh--dnwVr~~af~p~G 346 (406)
T KOG0295|consen 273 LRE-HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL---FTLVGH--DNWVRGVAFSPGG 346 (406)
T ss_pred hhc-cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE---EEEecc--cceeeeeEEcCCC
Confidence 544 8999999999773 358999999999999999998665 567778 4679999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 473 RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 473 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+||+++.+|+++++||+++.+++.++.+|...|+++.|+. +..+++||+-|.++++|.
T Consensus 347 kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 347 KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999999998 777999999999999994
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-33 Score=271.18 Aligned_cols=274 Identities=20% Similarity=0.370 Sum_probs=245.2
Q ss_pred HHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC
Q 009597 245 AEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 324 (531)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 324 (531)
+++++|..++..+++|..+|.+++|+. +|.++.+|..|+++|.+|.|+.+|++|++++.|+++.+||..++++...|..
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 467788889999999999999999986 7899999999999999999999999999999999999999999999999987
Q ss_pred CCcc-eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCe
Q 009597 325 GKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 403 (531)
Q Consensus 325 ~~~~-~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~ 403 (531)
+..+ ..+.|..+ .-|++++.|+.|+++.+....++.++.+|.++|++|.|+|.+.+|+++|+|++++||......
T Consensus 317 ~s~~~lDVdW~~~----~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 317 HSAPALDVDWQSN----DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred ccCCccceEEecC----ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 7776 33555544 349999999999999999999999999999999999999999999999999999999998888
Q ss_pred EEEEeeCCCCCCccEEEEeCCC---------CEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCE
Q 009597 404 VIKYISEPHMHSMPSISLHPNT---------NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 474 (531)
Q Consensus 404 ~~~~~~~~~~~~v~~v~~sp~~---------~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 474 (531)
....+.. |...|..+.|+|.| ..+++++.|++|++||+..+.++ ..|..|. ..|.+++|+|+|+|
T Consensus 393 ~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i---~~f~kH~--~pVysvafS~~g~y 466 (524)
T KOG0273|consen 393 SVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI---HTLMKHQ--EPVYSVAFSPNGRY 466 (524)
T ss_pred chhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee---EeeccCC--CceEEEEecCCCcE
Confidence 7777754 88899999999853 56999999999999999998666 4566675 45888999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 475 VMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 475 l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|++|+.||.|.||+.+++++++.+.+ .+.|..++|+- .+.+|..+-.||.+++-|
T Consensus 467 lAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~-~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNA-AGDKLGACASDGSVCVLD 521 (524)
T ss_pred EEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcC-CCCEEEEEecCCCceEEE
Confidence 99999999999999999999999985 45599999999 678999999999998865
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-32 Score=249.29 Aligned_cols=247 Identities=24% Similarity=0.395 Sum_probs=208.8
Q ss_pred CeeeEEecCccCceEEEEEccC-CCEEEEEecCCeEEEEeCC-----CCcEEEEccCC-CcceEEEEccCCCCCcEEEEe
Q 009597 274 GKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTE-----TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAG 346 (531)
Q Consensus 274 ~~~~~~l~gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~-----t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg 346 (531)
.....+|++|++.|+.++..+. ...|++++.|.++.+|++. .|..++.+..+ |.+.-+.+.+ ++++++++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~---dg~~alS~ 81 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS---DGNFALSA 81 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc---CCceEEec
Confidence 3456789999999999999886 5678999999999999874 46677777652 2333344444 34789999
Q ss_pred eCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCC--
Q 009597 347 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-- 424 (531)
Q Consensus 347 ~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-- 424 (531)
+.|+.+++||+.+++..+.|.+|...|.+++|+++++.+++||.|++|++|++............+..-|.|++|+|+
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 999999999999999999999999999999999999999999999999999998765554444434788999999997
Q ss_pred CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCc
Q 009597 425 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504 (531)
Q Consensus 425 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 504 (531)
..+|++++.|++|++||+++.+ ....+.|| .++++.+++||||.++++|+.||.+.+||++.++.+..+. |...
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~---l~~~~~gh--~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~ 235 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQ---LRTTFIGH--SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDI 235 (315)
T ss_pred CcEEEEccCCceEEEEccCCcc---hhhccccc--cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCe
Confidence 7899999999999999998853 33567787 5779999999999999999999999999999999988876 7789
Q ss_pred EEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 505 CIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 505 V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|.+++|+| +.. .+....+..|+|||
T Consensus 236 v~sl~fsp-nry-wL~~at~~sIkIwd 260 (315)
T KOG0279|consen 236 VNSLCFSP-NRY-WLCAATATSIKIWD 260 (315)
T ss_pred EeeEEecC-Cce-eEeeccCCceEEEe
Confidence 99999999 544 44445566799997
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=253.80 Aligned_cols=278 Identities=22% Similarity=0.424 Sum_probs=242.0
Q ss_pred HHHhhhhccCCCCCCCceeeeeecc-cCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC
Q 009597 248 YAKKKEEKGNAGGEKGEHVEDKSTF-HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK 326 (531)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~ 326 (531)
....+++...++|+.+..|..|..+ ..+-..+++||+++|..+.|.+|++.|++||.|++|+.||.++|++++.+..+.
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~ 132 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT 132 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc
Confidence 3456788889999999999999965 455677889999999999999999999999999999999999999999985443
Q ss_pred cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 009597 327 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 406 (531)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 406 (531)
..+-.+.+..-+..++.+|+.|+++++||+++...++++. ..-+++++.|...+..+++|+-|+.|++||++......
T Consensus 133 -~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~ 210 (338)
T KOG0265|consen 133 -SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY 210 (338)
T ss_pred -ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceE
Confidence 3444445666667899999999999999999999888875 34779999999999999999999999999999887776
Q ss_pred EeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceece-eeeecCCccc--cceEEEEEcCCCCEEEEEeCCCc
Q 009597 407 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVA--GYACQVNFSPDGRFVMSGDGEGK 483 (531)
Q Consensus 407 ~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~-~~~~~~~~~~--~~v~~l~~spdg~~l~sgs~dg~ 483 (531)
.+. +|...|+.+..+|+|.++.+-++|+++++||++-.-.-.+ ++.+.+|... .....++|+|++.++.+|+.|..
T Consensus 211 ~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~ 289 (338)
T KOG0265|consen 211 TLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF 289 (338)
T ss_pred Eee-cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce
Confidence 664 5999999999999999999999999999999986444333 5667776543 33456889999999999999999
Q ss_pred EEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 484 CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 484 I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
+++||..+...+..+.+|.+.|+++.|+| ...+|.+|+.|.+|.+
T Consensus 290 vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 290 VYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYL 334 (338)
T ss_pred EEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEe
Confidence 99999999999999999999999999999 7889999999999976
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-32 Score=248.18 Aligned_cols=263 Identities=21% Similarity=0.355 Sum_probs=216.6
Q ss_pred cCCCCCCCceeeeee-----cccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-cce
Q 009597 256 GNAGGEKGEHVEDKS-----TFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPY 329 (531)
Q Consensus 256 ~~~~~~~~~~i~~~~-----~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~ 329 (531)
++..++.+..+..|. ...|..++.|.||+..|..+..++||++.++++.|+++++||+.+++..+.|..+. .+.
T Consensus 30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl 109 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL 109 (315)
T ss_pred eEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE
Confidence 445567777777775 44588899999999999999999999999999999999999999999988885433 345
Q ss_pred EEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEccc--CCCeeEEEEecC--CCEEEEEeCCCCEEEEEcCCCeEE
Q 009597 330 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH--LGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVVI 405 (531)
Q Consensus 330 ~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h--~~~I~~l~~sp~--~~~l~s~s~Dg~I~iwd~~~~~~~ 405 (531)
.+.+++++ ..+++|+.|.+|++|++-.. +..++..+ .+.|+|+.|+|+ ..+|+++|.|++|++||+++.+..
T Consensus 110 sva~s~dn---~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 110 SVAFSTDN---RQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred EEEecCCC---ceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence 56666543 57999999999999998744 44444333 789999999997 689999999999999999998776
Q ss_pred EEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEE
Q 009597 406 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 485 (531)
Q Consensus 406 ~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~ 485 (531)
..+. +|.+.++.++++|+|.++++|+.||.+.+||++.++.+. .+. + ...|.+++|+|+...|+.+... .|+
T Consensus 186 ~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---sl~-a--~~~v~sl~fspnrywL~~at~~-sIk 257 (315)
T KOG0279|consen 186 TTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---SLE-A--FDIVNSLCFSPNRYWLCAATAT-SIK 257 (315)
T ss_pred hccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE---ecc-C--CCeEeeEEecCCceeEeeccCC-ceE
Confidence 6654 599999999999999999999999999999999986643 222 3 3558899999998877766554 599
Q ss_pred EEECCCCeEEEEeec----c-----CCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 486 FWDWKSCKVFRTLKC----H-----EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 486 iwd~~~~~~~~~~~~----h-----~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|||+.++.++..++. . .-.+.+++|++ ++..|++|-.|+.|++|.
T Consensus 258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEE
Confidence 999999988776642 1 23578899999 888999999999999993
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.5e-34 Score=272.40 Aligned_cols=276 Identities=17% Similarity=0.320 Sum_probs=239.6
Q ss_pred HHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC
Q 009597 245 AEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 324 (531)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 324 (531)
+..+.+.++++.+.+|+..|.+..|.-..-.....+..|..+|+++.|+++|.+++||+.+|.|++|+..- ..++.+..
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~a 177 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQA 177 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhH
Confidence 45677899999999999999999998755444556788999999999999999999999999999999754 33444443
Q ss_pred C--CcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 009597 325 G--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 325 ~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~ 402 (531)
+ ..+..++|++.+ ..|++++.||+|+|||....+....+.+|.-.|.+++|+|...+++++|.|..|++||.+++
T Consensus 178 hh~eaIRdlafSpnD---skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPND---SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhhhhhheeccCCCC---ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 3 456777777744 46999999999999999999888889999999999999999999999999999999999999
Q ss_pred eEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC-CCCEEEEEeCC
Q 009597 403 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGE 481 (531)
Q Consensus 403 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~d 481 (531)
.++..+.. |...|..+.|+|++++|++++.|..+++||+++.+ .+..+.+|. ..+.++.|+| ...+|.+|+.|
T Consensus 255 ~cl~tlh~-HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk---El~~~r~Hk--kdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 255 SCLATLHG-HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK---ELFTYRGHK--KDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred chhhhhhh-ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH---HHHHhhcch--hhheeeccccccccceeeccCC
Confidence 99988865 99999999999999999999999999999999653 446677885 4588999999 56788899999
Q ss_pred CcEEEEECCCCeEEEEee-ccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 482 GKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 482 g~I~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|.|..|.+...+++..+. +|.+.|.+++||| -+.+|++|+.|.++++|.
T Consensus 329 gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 329 GSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWT 378 (464)
T ss_pred CceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeec
Confidence 999999999666666664 8999999999999 788999999999999994
No 16
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-32 Score=263.83 Aligned_cols=273 Identities=21% Similarity=0.361 Sum_probs=237.7
Q ss_pred HHhhhhccCCCCCCCceeeeeeccc---CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC
Q 009597 249 AKKKEEKGNAGGEKGEHVEDKSTFH---GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 325 (531)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~ 325 (531)
..+..++.+|+++++.+..+|.+.. -+..+++.||..+|.-|.||||.++|++|+.|..+++||+.+|.+...+..+
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~ 310 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG 310 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC
Confidence 3578889999999999888887543 4668999999999999999999999999999999999999999999988776
Q ss_pred --CcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEccc-CCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 009597 326 --KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 326 --~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h-~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~ 402 (531)
..+.+++|.|++ ..+++|+.|+.|..||+... ......+- ...|.+++..+||+++++.+.|..|++++....
T Consensus 311 ~~~S~~sc~W~pDg---~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 311 LGFSVSSCAWCPDG---FRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred cCCCcceeEEccCC---ceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence 456677777765 45999999999999999743 34444332 256999999999999999999999999999887
Q ss_pred eEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC-CCCEEEEEeCC
Q 009597 403 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGE 481 (531)
Q Consensus 403 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~d 481 (531)
.....+. ...+|++++++.+++++++.-.+..|.+||+..... +..+.||....++..-+|-- +..++++|++|
T Consensus 387 ~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l---v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 387 VDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL---VRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred hhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH---HHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 6665554 467899999999999999999999999999996543 36688898888888888876 45899999999
Q ss_pred CcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 482 GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 482 g~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+.|+||+..+++++..+.+|...|++|+|+|.+..++|++|.||+||||
T Consensus 462 ~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 462 SKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred ceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 9999999999999999999999999999999999999999999999999
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=281.85 Aligned_cols=280 Identities=24% Similarity=0.474 Sum_probs=242.0
Q ss_pred HHHHHhhhhccCCCCCCCceeeeeecccCe--eeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeC-CCCcEEEEc
Q 009597 246 EEYAKKKEEKGNAGGEKGEHVEDKSTFHGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT-ETGQVIRTF 322 (531)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~-~t~~~i~~~ 322 (531)
.++...+++..++.+..++.+.+|....++ +++.+.+|...|.+++|+|+++++++++.|++|+|||+ ..+.+++++
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l 242 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL 242 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence 345667888888889999999999998888 88999999999999999999999999999999999999 556888988
Q ss_pred cCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 009597 323 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~ 402 (531)
. +|...+.++.+.+.. +++++|+.|++|+|||+++++++..+.+|.+.|++++|++++++|++++.|+.|+|||+.++
T Consensus 243 ~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 243 K-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred c-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 6 555555555555555 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred e--EEEEeeCCCCC-CccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccc-cceEEEEEcCCCCEEEEE
Q 009597 403 V--VIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA-GYACQVNFSPDGRFVMSG 478 (531)
Q Consensus 403 ~--~~~~~~~~~~~-~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~sg 478 (531)
. +...+...... +++++.|+|++.+|++++.|+.+++||++....+ ..+.+|... ..+.+..+++.+.++++|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~sg 397 (456)
T KOG0266|consen 321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV---GTYTGHSNLVRCIFSPTLSTGGKLIYSG 397 (456)
T ss_pred ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce---eeecccCCcceeEecccccCCCCeEEEE
Confidence 8 44555443333 6999999999999999999999999999987554 455566543 123345568899999999
Q ss_pred eCCCcEEEEECCCCeEEEEeecc-CCcEEEEEEecCCCCEEEEEe--CCCCEEeeC
Q 009597 479 DGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCG--WDGLIKYWD 531 (531)
Q Consensus 479 s~dg~I~iwd~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~l~t~s--~Dg~I~iWD 531 (531)
+.|+.|++||+.++..+..+.+| ...+..+.|+| ...++++++ .|+.|++|-
T Consensus 398 ~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 398 SEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred eCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEec
Confidence 99999999999999999999999 88999999999 788999988 689999993
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.9e-32 Score=277.19 Aligned_cols=261 Identities=20% Similarity=0.350 Sum_probs=220.8
Q ss_pred hhhhccCCCCCCCceeeeeecccC-------------------------------eeeEEecCccCceEEEEEccCCCEE
Q 009597 251 KKEEKGNAGGEKGEHVEDKSTFHG-------------------------------KCMRTYMGHSKAVRDISFCNDGTKF 299 (531)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~-------------------------------~~~~~l~gH~~~V~~l~fspdg~~l 299 (531)
+.+...++.|-.+..|++|+.... ...+++.||.++|..+.|+|+.++|
T Consensus 387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfL 466 (707)
T KOG0263|consen 387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFL 466 (707)
T ss_pred cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccce
Confidence 344445567777888888876531 3456799999999999999999999
Q ss_pred EEEecCCeEEEEeCCCCcEEEEccCCC-cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEE
Q 009597 300 LTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF 378 (531)
Q Consensus 300 ~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~ 378 (531)
++||.|++||+|.+.+..++-.+..+. +++.+.|+| .+.+|++++.|++.++|......+.+.+.+|...|.|+.|
T Consensus 467 lScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P---~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~F 543 (707)
T KOG0263|consen 467 LSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP---RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSF 543 (707)
T ss_pred eeccCCcceeeeecccceeEEEecCCCcceeeEEecC---CceEEEecCCCceeeeeecccCCchhhhcccccccceEEE
Confidence 999999999999999999998887443 345666665 4689999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCc
Q 009597 379 VDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 458 (531)
Q Consensus 379 sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 458 (531)
+|+..++++||.|.+||+||+.++..++.+. +|..+|.+++|+|+|++|++|+.||.|.+||+.++..+ ..+.+|
T Consensus 544 HPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v---~~l~~H- 618 (707)
T KOG0263|consen 544 HPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV---KQLKGH- 618 (707)
T ss_pred CCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch---hhhhcc-
Confidence 9999999999999999999999999987775 59999999999999999999999999999999998555 567778
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------------------EEEEeeccCCcEEEEEEecCC
Q 009597 459 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK------------------------VFRTLKCHEGVCIGCEWHPLE 514 (531)
Q Consensus 459 ~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~------------------------~~~~~~~h~~~V~~v~~~p~~ 514 (531)
.+.++++.||.+|..||+|+.|.+|++||+..-. ++.++..-..+|.++.|.. .
T Consensus 619 -t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftr-r 696 (707)
T KOG0263|consen 619 -TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTR-R 696 (707)
T ss_pred -cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEec-c
Confidence 5779999999999999999999999999985321 3445555556788888887 4
Q ss_pred CCEEEEE
Q 009597 515 QSKVATC 521 (531)
Q Consensus 515 ~~~l~t~ 521 (531)
+-.|+.|
T Consensus 697 Nl~L~~g 703 (707)
T KOG0263|consen 697 NLLLAVG 703 (707)
T ss_pred ceeEEec
Confidence 4344433
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.7e-32 Score=254.58 Aligned_cols=275 Identities=25% Similarity=0.419 Sum_probs=239.2
Q ss_pred HHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC
Q 009597 245 AEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 324 (531)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 324 (531)
+++++..+...-.++|+.+.++.+|+..+|++..++.||...|+.+++|+-..||++|+.|+.|+.||++..+.|+.+..
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhG 233 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHG 233 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcc
Confidence 34556677778889999999999999999999999999999999999999999999999999999999999999988844
Q ss_pred C-CcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCe
Q 009597 325 G-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 403 (531)
Q Consensus 325 ~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~ 403 (531)
+ ..++++.++|.. .+|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++||.|++|++||++.++
T Consensus 234 HlS~V~~L~lhPTl---dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 234 HLSGVYCLDLHPTL---DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK 310 (460)
T ss_pred ccceeEEEeccccc---eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence 3 345667777654 579999999999999999999999999999999999999989999999999999999999998
Q ss_pred EEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCc
Q 009597 404 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 483 (531)
Q Consensus 404 ~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 483 (531)
....+.. |...+.+++.+|....|++++.|+ |+-|++..+..+ ..+.+|. ..+++++...|| ++++|++.|.
T Consensus 311 t~~tlt~-hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~---~nlsgh~--~iintl~~nsD~-v~~~G~dng~ 382 (460)
T KOG0285|consen 311 TMITLTH-HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFL---QNLSGHN--AIINTLSVNSDG-VLVSGGDNGS 382 (460)
T ss_pred eeEeeec-ccceeeEEecCCchhhhhccCCcc-ceeccCCccchh---hcccccc--ceeeeeeeccCc-eEEEcCCceE
Confidence 8877765 899999999999999999988765 899999887655 3466774 568888888777 6779999999
Q ss_pred EEEEECCCCeEEEEeec--------cCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 484 CWFWDWKSCKVFRTLKC--------HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 484 I~iwd~~~~~~~~~~~~--------h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|.+||++++-.++.+.. .+..|.+.+|.. .+..|+||..|.+|++|.
T Consensus 383 ~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 383 IMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEEEecCcCcccccccccccCCccccccceeEEeecc-cCceEEeccCCcceEEEe
Confidence 99999999877665521 234688899988 778999999999999993
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-32 Score=270.02 Aligned_cols=247 Identities=22% Similarity=0.435 Sum_probs=223.9
Q ss_pred eeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc-eEEEEccCCCCCcEEEEeeCCCeEEE
Q 009597 276 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQ 354 (531)
Q Consensus 276 ~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~dg~I~i 354 (531)
..+++..|+..|.++.|+|....++++-+.|.|.||+.++...++.|.....+ ....|.. ..+.+++|+.|..|+|
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia---RknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA---RKNWIVTGSDDMQIRV 81 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee---ccceEEEecCCceEEE
Confidence 34667779999999999999999999999999999999999999999765543 4444544 3478999999999999
Q ss_pred EECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC-CCCEEEEEEc
Q 009597 355 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSL 433 (531)
Q Consensus 355 wd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~s~ 433 (531)
|+.++++.+..|..|.+.|.||+.+|...+++++|+|-+|++||++..........+|.+.|.+++|+| +.+.|++++.
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 999999999999999999999999999999999999999999999999888888889999999999999 7789999999
Q ss_pred CCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEe
Q 009597 434 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG--RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 511 (531)
Q Consensus 434 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~ 511 (531)
|++|+||.+.+..+. .++.+|... |+|+++-+.| .||++|+.|..|+|||..+..|+.++.+|...|..+.||
T Consensus 162 DrTVKVWslgs~~~n---fTl~gHekG--VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPN---FTLEGHEKG--VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred cccEEEEEcCCCCCc---eeeeccccC--cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEec
Confidence 999999999886443 667788644 8999998744 699999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCCEEeeC
Q 009597 512 PLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 512 p~~~~~l~t~s~Dg~I~iWD 531 (531)
| .-.+++|||.||++|||+
T Consensus 237 p-~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 237 P-ELPIIISGSEDGTVRIWN 255 (794)
T ss_pred C-CCcEEEEecCCccEEEec
Confidence 9 888999999999999995
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=252.47 Aligned_cols=246 Identities=21% Similarity=0.356 Sum_probs=219.9
Q ss_pred CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC-CCcceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 274 ~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
-++.+.+.||.+-|+|+++.|-..+|+||+.|++|+|||+.+|++..++.. ...+.-+.++.- ..++++++.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r---HpYlFs~gedk~V 217 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR---HPYLFSAGEDKQV 217 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc---CceEEEecCCCee
Confidence 467889999999999999999999999999999999999999999999863 333445555553 3589999999999
Q ss_pred EEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEE
Q 009597 353 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s 432 (531)
+.||+...+.++.|.+|...|.|++.+|.-..|++|+.|.+++|||+++...+..+. +|..+|.++.+.|....+++|+
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCCceEEec
Confidence 999999999999999999999999999999999999999999999999998888876 4999999999999888899999
Q ss_pred cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEec
Q 009597 433 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 433 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p 512 (531)
.|++|++||++.++.. ..+..|. ..+.+++.+|....+++++.| .|+-|++..+..+..+.+|...|.+++...
T Consensus 297 ~D~tvrlWDl~agkt~---~tlt~hk--ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns 370 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTM---ITLTHHK--KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS 370 (460)
T ss_pred CCceEEEeeeccCcee---Eeeeccc--ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc
Confidence 9999999999998655 4455554 448889999999999999887 799999999999999999999999999886
Q ss_pred CCCCEEEEEeCCCCEEeeC
Q 009597 513 LEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 513 ~~~~~l~t~s~Dg~I~iWD 531 (531)
..++++|+..|.|.+||
T Consensus 371 --D~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 371 --DGVLVSGGDNGSIMFWD 387 (460)
T ss_pred --CceEEEcCCceEEEEEe
Confidence 35899999999999997
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=257.58 Aligned_cols=258 Identities=21% Similarity=0.409 Sum_probs=221.6
Q ss_pred hhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEE
Q 009597 253 EEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 332 (531)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 332 (531)
+.....+|.++.+|.+|+.....|++.+.||++.|.|+.|. .+.|++||.|.+|+|||+++|+++.++ .++...++.
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLh 282 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLH 282 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEE
Confidence 33456789999999999999999999999999999999995 568999999999999999999999988 445555555
Q ss_pred EccCCCCCcEEEEeeCCCeEEEEECCCCc---eeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEee
Q 009597 333 LNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 409 (531)
Q Consensus 333 ~~~~~~~~~~l~sg~~dg~I~iwd~~t~~---~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 409 (531)
+.+.. .++++++.|.+|.+||+.+.. +.+.+.+|..+|+.+.|+ .++++++|.|.+|++|++.+...++.+.
T Consensus 283 lrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~ 357 (499)
T KOG0281|consen 283 LRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN 357 (499)
T ss_pred EEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh
Confidence 55533 689999999999999997654 345678999999999995 5699999999999999999999988875
Q ss_pred CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009597 410 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 489 (531)
Q Consensus 410 ~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 489 (531)
. |...|.|+.+ .++++++|+.|++|++||+..+.++ ..+.||. ..|.++.|. .+.|++|..||+|+|||+
T Consensus 358 g-HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL---RvLeGHE--eLvRciRFd--~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 358 G-HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL---RVLEGHE--ELVRCIRFD--NKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred c-ccccceehhc--cCeEEEecCCCceEEEEeccccHHH---HHHhchH--Hhhhheeec--CceeeeccccceEEEEec
Confidence 4 8889988887 5899999999999999999998665 6678884 568888885 678999999999999999
Q ss_pred CCCe---------EEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 490 KSCK---------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 490 ~~~~---------~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
..+. ++.++..|.+.|..+.|.. ..+++++.|.+|.|||
T Consensus 428 ~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 428 QAALDPRAPASTLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILIWD 475 (499)
T ss_pred ccccCCcccccchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEEEE
Confidence 7653 4556677999999999954 7899999999999997
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.4e-30 Score=244.66 Aligned_cols=273 Identities=18% Similarity=0.249 Sum_probs=229.1
Q ss_pred HHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEcc-CCC
Q 009597 248 YAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-TGK 326 (531)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~-~~~ 326 (531)
+...|...+.++|+.+....+|+.-++.....+.||+..|+++.|+.+|.+||||+.+|.|+||+..++.....+. ...
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~ 149 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE 149 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccC
Confidence 3345567788899999999999999999999999999999999999999999999999999999999999888875 223
Q ss_pred cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 009597 327 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 406 (531)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 406 (531)
...-+.++| ..++|++|+.||.|.+|.+.++...+.+.+|..++++-.|.|+|++++++..||+|++|+..++.++.
T Consensus 150 dieWl~WHp---~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 150 DIEWLKWHP---RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred ceEEEEecc---cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 334455555 56899999999999999999988999999999999999999999999999999999999998887766
Q ss_pred EeeCCC--------------------------------------------------CCCccEE---EEeCCCCEEEEEEc
Q 009597 407 YISEPH--------------------------------------------------MHSMPSI---SLHPNTNWLAAQSL 433 (531)
Q Consensus 407 ~~~~~~--------------------------------------------------~~~v~~v---~~sp~~~~l~s~s~ 433 (531)
.+.... ...+.|+ .++..-.+.|+|+.
T Consensus 227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v 306 (399)
T KOG0296|consen 227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV 306 (399)
T ss_pred EecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence 554110 1111122 22333467888999
Q ss_pred CCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecC
Q 009597 434 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 513 (531)
Q Consensus 434 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~ 513 (531)
||+|.|||+.... ++..-.|. ..|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|...|.+++++|
T Consensus 307 dG~i~iyD~a~~~----~R~~c~he--~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~- 378 (399)
T KOG0296|consen 307 DGTIAIYDLAAST----LRHICEHE--DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP- 378 (399)
T ss_pred cceEEEEecccch----hheeccCC--CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-
Confidence 9999999987642 22233343 3488899998 78999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCEEeeC
Q 009597 514 EQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 514 ~~~~l~t~s~Dg~I~iWD 531 (531)
+.++++|+|.|++.+||+
T Consensus 379 ~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 379 QKRLVVTVSDDNTALVFE 396 (399)
T ss_pred CCcEEEEecCCCeEEEEe
Confidence 888999999999999985
No 24
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9e-31 Score=234.05 Aligned_cols=272 Identities=23% Similarity=0.357 Sum_probs=234.1
Q ss_pred HHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC
Q 009597 246 EEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 325 (531)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~ 325 (531)
..++...+++...+.+.+.+++.|++..+.++++|.||...|.+++.+.|...|++|+.|+.|.+||+++|+.++.|..+
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc
Confidence 34445566777777888999999999999999999999999999999999999999999999999999999999999654
Q ss_pred C-cceEEEEccCCCCCcEEEEeeCCCeEEEEECCC--CceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 009597 326 K-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 326 ~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t--~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~ 402 (531)
. .+..+.|+.. ..++++|+.|.++++||.++ .++++.+....+.|.+|... +..+++||.||++|.||++.+
T Consensus 101 ~aqVNtV~fNee---sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 101 LAQVNTVRFNEE---SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred cceeeEEEecCc---ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecc
Confidence 3 3344555543 36899999999999999976 47899999889999999985 678999999999999999999
Q ss_pred eEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC
Q 009597 403 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 482 (531)
Q Consensus 403 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 482 (531)
....-. ..++|++++|+++++..++++.|++|++.|-.+++.+ +.+.||.+..+-..++++.....+++|++||
T Consensus 176 ~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL---~sYkGhkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 176 TLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL---KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred eeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHHH---HHhcccccceeeeeeeecccceeEEeccCCc
Confidence 765443 5689999999999999999999999999999998655 6788999888888899999999999999999
Q ss_pred cEEEEECCCCeEEEEeeccCCc-EEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 483 KCWFWDWKSCKVFRTLKCHEGV-CIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 483 ~I~iwd~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.|++||+.....+..+..|... |.++.++| ....|+++. ++.+.+|
T Consensus 250 ~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp-~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 250 KVYFWDLVDETQISKLSVVSTVIVTDLSCHP-TMDDFITAT-GHGDLFW 296 (307)
T ss_pred eEEEEEeccceeeeeeccCCceeEEeeeccc-CccceeEec-CCceece
Confidence 9999999999999999988887 89999999 444455554 3345455
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1e-29 Score=247.53 Aligned_cols=274 Identities=28% Similarity=0.478 Sum_probs=236.0
Q ss_pred HHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-
Q 009597 248 YAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK- 326 (531)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~- 326 (531)
+...+++..++.+..++.+.+|+...++....+.+|...|.++.|++++++|++++.||.|++|++.+++.+..+..+.
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 94 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS 94 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC
Confidence 3345556667777788999999999888999999999999999999999999999999999999999887777776443
Q ss_pred cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 009597 327 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 406 (531)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 406 (531)
....+.+.+. +.++++++.++.|.+||+++++.+..+..|...|.++.|+|++.++++++.|+.|++||++.+..+.
T Consensus 95 ~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 95 YVSSVAFSPD---GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred cEEEEEEcCC---CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce
Confidence 3455555553 4677778889999999999999999999999999999999998888888889999999999887776
Q ss_pred EeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 009597 407 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 486 (531)
Q Consensus 407 ~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~i 486 (531)
.+. .+...+.+++|+|+++.+++++.++.|++||++....+ ..+..| ...+.++.|+|++.++++++.+|.|++
T Consensus 172 ~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~i 245 (289)
T cd00200 172 TLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL---GTLRGH--ENGVNSVAFSPDGYLLASGSEDGTIRV 245 (289)
T ss_pred eEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee---cchhhc--CCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence 665 47779999999999999999999999999999876444 333344 346888999999999999888999999
Q ss_pred EECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 487 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 487 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
||+.+++.+..+..|...|.+++|+| ++.+|++++.||.|++||
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 246 WDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 99999999999999999999999999 678999999999999997
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=2.3e-30 Score=254.72 Aligned_cols=285 Identities=20% Similarity=0.278 Sum_probs=240.1
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEec---CccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 009597 240 EQKKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYM---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 316 (531)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~---gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 316 (531)
++.+.+.+++.+++++..++.+.++.+.+++-.+|+.+..|. +|++.|.+|+|+||++.|+|+|.|.+++|||+.+.
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence 344578889999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred cEEEEccCCCc--ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCE
Q 009597 317 QVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSL 394 (531)
Q Consensus 317 ~~i~~~~~~~~--~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I 394 (531)
++++++..+.. ...+.+.+.. ..|++.+.+|.|.+++.....+++.+.+|...|+++..++++.+|++|+.||.|
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqk---d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQK---DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeC---CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence 99999987766 3444444432 469999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeEE-------------------------------EEee----------------------------------
Q 009597 395 RVWEFGIPVVI-------------------------------KYIS---------------------------------- 409 (531)
Q Consensus 395 ~iwd~~~~~~~-------------------------------~~~~---------------------------------- 409 (531)
.-|+..++..- +.+.
T Consensus 345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 99998432110 0000
Q ss_pred ---------------CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCE
Q 009597 410 ---------------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 474 (531)
Q Consensus 410 ---------------~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 474 (531)
.+-.....+++++|++..+++|+.|+.|+||.+........ .....| .+.+++++||||+.|
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee-~~~~~h--~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE-AKLLEH--RAAITDVAYSPDGAY 501 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce-eeeecc--cCCceEEEECCCCcE
Confidence 00112256888999999999999999999999987543322 223344 466999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEE-EeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 475 VMSGDGEGKCWFWDWKSCKVFR-TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 475 l~sgs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|++|+..+.+.+||+.+.+... .+..|...|.+++|+| ++.+|||||.|-+|.||+
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEE
Confidence 9999999999999999877633 3446999999999999 888999999999999995
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-30 Score=233.32 Aligned_cols=243 Identities=24% Similarity=0.412 Sum_probs=206.9
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC-CcceEEEEccCCCCCcEEEEeeCCCeEE
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 353 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~ 353 (531)
+.++.+.+|.++|+.+.|+-||++.++|+.|++|++|+...|.+++++..+ +.+.......++ ..|++|+.|..|.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn---skf~s~GgDk~v~ 84 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN---SKFASCGGDKAVQ 84 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc---cccccCCCCceEE
Confidence 456788999999999999999999999999999999999999999999543 233333344433 4599999999999
Q ss_pred EEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC--eEEEEeeCCCCCCccEEEEeCCCCEEEEE
Q 009597 354 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQ 431 (531)
Q Consensus 354 iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 431 (531)
+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++. ++++.+.. ....|.++.+. +..|++|
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-hcCceeEEEec--ccEEEee
Confidence 9999999999999999999999999999999999999999999999764 55555543 66788888875 6789999
Q ss_pred EcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEE--EEE
Q 009597 432 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI--GCE 509 (531)
Q Consensus 432 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~--~v~ 509 (531)
+.||+++.||++.+... ..+.+ ..|++++|+++++++++++-|++|++.|-.+|+++..+++|...-. .++
T Consensus 162 S~DGtvRtydiR~G~l~---sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLS---SDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred ccCCcEEEEEeecceee---hhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 99999999999987443 23333 4488999999999999999999999999999999999999987433 445
Q ss_pred EecCCCCEEEEEeCCCCEEeeC
Q 009597 510 WHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 510 ~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+.. ....+++|+.||.|.+||
T Consensus 235 l~q-sdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 235 LNQ-SDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ecc-cceeEEeccCCceEEEEE
Confidence 555 556899999999999997
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.7e-29 Score=229.05 Aligned_cols=252 Identities=21% Similarity=0.372 Sum_probs=206.8
Q ss_pred eeeEEecCccCceEEEEEccC-CCEEEEEecCCeEEEEeCCC---CcEEEEccCCCcc--eEEEEccCCCCCcEEEEeeC
Q 009597 275 KCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTET---GQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMS 348 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t---~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~ 348 (531)
..++.+.||++.|..++|+|- |..|+|||.|+.|+||++.. -.+...+..++.. ..+++.|. +++|++++.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~---g~~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH---GRYLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC---CcEEEEeec
Confidence 356889999999999999997 88999999999999999874 4455555544444 44555553 469999999
Q ss_pred CCeEEEEECCC--CceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCe--EEEEeeCCCCCCccEEEEeCC
Q 009597 349 DKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPHMHSMPSISLHPN 424 (531)
Q Consensus 349 dg~I~iwd~~t--~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~v~~v~~sp~ 424 (531)
|.++.||.-.. .+++..+.+|...|.|++|+++|++|++++.|++|-||.+.... .+..+..+|...|..+.|||.
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 99999998654 46889999999999999999999999999999999999998543 233344569999999999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeE---
Q 009597 425 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-------CKV--- 494 (531)
Q Consensus 425 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~-------~~~--- 494 (531)
..+|++++.|++|++|.-.....-.....+.+|.. .+.+++|++.|..|++++.|++|+||-..+ ++.
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v 239 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDV 239 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccc--eEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEee
Confidence 99999999999999998764444556678888864 589999999999999999999999997321 111
Q ss_pred ---------------EE------------------EeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 495 ---------------FR------------------TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 495 ---------------~~------------------~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+. .-.+|...|+++.|.|....+|++||.||.|++|.
T Consensus 240 ~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 240 PWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 00 11247778999999996678999999999999993
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-30 Score=244.79 Aligned_cols=248 Identities=21% Similarity=0.350 Sum_probs=218.6
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEE
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 354 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 354 (531)
.+...+.||..+|+.+-|+|+-..+++++.|++|++||..++++...+..+... +..+.++.. +.++++++.|-.+.+
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s-v~di~~~a~-Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS-VFDISFDAS-GKYLATCSSDLSAKL 176 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc-eeEEEEecC-ccEEEecCCccchhh
Confidence 455678889999999999999999999999999999999999998888655443 555555543 478999999999999
Q ss_pred EECCC-CceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc
Q 009597 355 WDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 433 (531)
Q Consensus 355 wd~~t-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~ 433 (531)
||..+ .++++.+.+|.-.|.++.|-|.|.++++++.|.+|+.|++.++.++..+.. |..-|..++.+.+|.++++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCeeEEEecCC
Confidence 99976 678888899999999999999999999999999999999999999988864 8889999999999999999999
Q ss_pred CCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009597 434 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD---------------GRFVMSGDGEGKCWFWDWKSCKVFRTL 498 (531)
Q Consensus 434 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd---------------g~~l~sgs~dg~I~iwd~~~~~~~~~~ 498 (531)
|.+|++|-+.++.+. ..+..|... +-+++|.|. +.++.+++.|++|++||+.++.++.++
T Consensus 256 dqtl~vW~~~t~~~k---~~lR~hEh~--vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCK---AELREHEHP--VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred CceEEEEEeccchhh---hhhhccccc--eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 999999999887443 345556433 667777652 369999999999999999999999999
Q ss_pred eccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 499 KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 499 ~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.+|...|..++|+| ++.+|++|..|+++++||
T Consensus 331 ~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSP-GGKYILSCADDKTLRVWD 362 (406)
T ss_pred ecccceeeeeEEcC-CCeEEEEEecCCcEEEEE
Confidence 99999999999999 999999999999999997
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.3e-30 Score=262.61 Aligned_cols=272 Identities=22% Similarity=0.321 Sum_probs=227.4
Q ss_pred HhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcE----EEEccCC
Q 009597 250 KKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV----IRTFSTG 325 (531)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~----i~~~~~~ 325 (531)
..+++..++-+...+.+++++..+..|. .+.||+..|.++....+|-+|+|||.|.++++|.++.+.. +... .+
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-~g 409 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-NG 409 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-cc
Confidence 4555566666677778888877666666 8999999999999666788999999999999998854432 2222 23
Q ss_pred CcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc-----eeE----EEcccCCCeeEEEEecCCCEEEEEeCCCCEEE
Q 009597 326 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-----ITQ----EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 396 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~-----~~~----~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~i 396 (531)
|...+.++........+|++++.|++|++|++...+ ++. ....|...|+|++++|+.++|+|||.|++.+|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 333333333343455789999999999999997522 111 23569999999999999999999999999999
Q ss_pred EEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEE
Q 009597 397 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 476 (531)
Q Consensus 397 wd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 476 (531)
|++........+. +|...|.++.|+|..+.++++|.|.+|+||.+.+..++ ++|.||... |..+.|-.+|..|+
T Consensus 490 W~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl---kT~eGH~~a--Vlra~F~~~~~qli 563 (775)
T KOG0319|consen 490 WDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL---KTFEGHTSA--VLRASFIRNGKQLI 563 (775)
T ss_pred ecccCceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEeccceee---eeecCccce--eEeeeeeeCCcEEE
Confidence 9999887777775 59999999999999999999999999999999997554 889999644 88999999999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 477 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 477 sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+++.||-|++|+++++.|+.++.+|...|.+++.+| ...+++||+.||.|.+|
T Consensus 564 S~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 564 SAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP-LLDMFVTGGGDGRIIFW 616 (775)
T ss_pred eccCCCcEEEEeccchhhhhhhhhccceeEEEeecC-ccceeEecCCCeEEEEe
Confidence 999999999999999999999999999999999999 67799999999999999
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.2e-29 Score=254.76 Aligned_cols=251 Identities=20% Similarity=0.354 Sum_probs=213.4
Q ss_pred HHHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEcc
Q 009597 244 YAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 323 (531)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~ 323 (531)
.+.+++-++++..+++|.+++.|++|+...+-|+.+|..|++.|+.++|+..|+.++++|.||+|+.||+......++|.
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft 431 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT 431 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEccCCCCCcEEEEeeCCC-eEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 009597 324 TGKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~sg~~dg-~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~ 402 (531)
...+....++..++. +.++++|+.|. .|.+|++.+|+.+..+.+|.++|.+++|+|.+..|+++|.|++||+||+-..
T Consensus 432 ~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 432 SPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred CCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 888877766666554 46788887775 7999999999999999999999999999999999999999999999998654
Q ss_pred -eEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeee---------------ecCCccccceEEE
Q 009597 403 -VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR---------------FAGHIVAGYACQV 466 (531)
Q Consensus 403 -~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~---------------~~~~~~~~~v~~l 466 (531)
.....+. +.+.+..++|+|+|+.|++++.||+|.+||.....+...+.. -.........+.+
T Consensus 511 ~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti 588 (893)
T KOG0291|consen 511 SGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI 588 (893)
T ss_pred CceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence 2333333 567899999999999999999999999999887654421110 0111123557889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 009597 467 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 497 (531)
Q Consensus 467 ~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~ 497 (531)
++|+||.+|++|+....|+|||+.++-+++.
T Consensus 589 ~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk 619 (893)
T KOG0291|consen 589 CYSADGKCILAGGESNSICIYDVPEGVLLKK 619 (893)
T ss_pred EEcCCCCEEEecCCcccEEEEECchhheeee
Confidence 9999999999999999999999987655443
No 32
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.6e-31 Score=247.00 Aligned_cols=284 Identities=25% Similarity=0.354 Sum_probs=244.3
Q ss_pred HHHHHHHHHhhhhccCCCCCCCceeeeeecccCeeeE--------EecCccCceEEEEEccCCCEEEEEecCCeEEEEeC
Q 009597 242 KKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMR--------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 313 (531)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 313 (531)
+..+++...++++..+++|+.+|.+++|+..+|+... .|+-|..+|.|++|+.|...|++|+.||.|+||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 3446778889999999999999999999999987754 45568999999999999999999999999999999
Q ss_pred CCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCC
Q 009597 314 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393 (531)
Q Consensus 314 ~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~ 393 (531)
++|+|++.|...+...+.++.+..++ ..+++++.|.++++--+.+|+++.++.+|...|+...|.++|.++++++.||+
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 99999999986655544444443332 45899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeeC-CCCCCccEEEEeC-CCCEEEEEEcCCeEEEEEcCCcceeceeeee-cCCccccceEEEEEcC
Q 009597 394 LRVWEFGIPVVIKYISE-PHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVAGYACQVNFSP 470 (531)
Q Consensus 394 I~iwd~~~~~~~~~~~~-~~~~~v~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~v~~l~~sp 470 (531)
|++|+.++..++..+.. +...+|.++-.-| +...++++...++|.|.++... . ++.| .|....+...+.+.||
T Consensus 372 vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-v---VrsfsSGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 372 VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-V---VRSFSSGKREGGDFINAILSP 447 (508)
T ss_pred EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-E---EeeeccCCccCCceEEEEecC
Confidence 99999999988877754 3455788887777 6788999999999999998653 2 2223 2333345555678999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 471 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 471 dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.|.++.+.+.|+.++.|.+.+|++.+++..|...|..++-|| ..++|++-+.||.+++|-
T Consensus 448 kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999999999999 788999999999999993
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=5e-29 Score=224.65 Aligned_cols=252 Identities=21% Similarity=0.363 Sum_probs=211.1
Q ss_pred hhhhccCCCCCCCceeeeeeccc--CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc
Q 009597 251 KKEEKGNAGGEKGEHVEDKSTFH--GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP 328 (531)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~ 328 (531)
.++++.++.+. ..+|++++..+ ..++.+|.+|++.|+++.|..+|+.++|||.||+++|||++...+-+.+.....+
T Consensus 49 Tpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spV 127 (311)
T KOG0315|consen 49 TPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPV 127 (311)
T ss_pred cCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCc
Confidence 34444444322 34566666554 4479999999999999999999999999999999999999998888888888888
Q ss_pred eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEc-ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC-----
Q 009597 329 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP----- 402 (531)
Q Consensus 329 ~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~----- 402 (531)
..+.+++.. .-|++|..+|.|++||+....+...+- .....|.++...|+|.+++.+...|.+.+|++-..
T Consensus 128 n~vvlhpnQ---teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 128 NTVVLHPNQ---TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred ceEEecCCc---ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc
Confidence 888888854 569999999999999999887766653 34468999999999999999999999999998653
Q ss_pred -eEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC
Q 009597 403 -VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 481 (531)
Q Consensus 403 -~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 481 (531)
.++..+ ..|...+..+.++|++++|++++.|.+++||++.+. +.....+.+|. .++..++||.||.||++|+.|
T Consensus 205 l~P~~k~-~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~--rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 205 LEPVHKF-QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQ--RWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred ceEhhhe-ecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCC--ceEEeeeeccCccEEEecCCC
Confidence 233333 348888999999999999999999999999999876 34445677774 789999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeeccCCcEEEEEEe
Q 009597 482 GKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 511 (531)
Q Consensus 482 g~I~iwd~~~~~~~~~~~~h~~~V~~v~~~ 511 (531)
+.+++||+..++.+..+.+|.....|++.+
T Consensus 280 ~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 280 HTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999887777764
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.9e-29 Score=261.06 Aligned_cols=248 Identities=24% Similarity=0.441 Sum_probs=211.6
Q ss_pred eEEecCc-cCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc--EEEEccCCCc--ceEEEEccCCCCCcEEEEeeCCCe
Q 009597 277 MRTYMGH-SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--VIRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKK 351 (531)
Q Consensus 277 ~~~l~gH-~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~--~i~~~~~~~~--~~~~~~~~~~~~~~~l~sg~~dg~ 351 (531)
...+.+| ...|.++.|+++|+.|++++.|+.+++|+..+.. ....+ .++. +..++|.+++ .++++++.|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~---~~l~s~s~D~t 226 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDG---SYLLSGSDDKT 226 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCC---cEEEEecCCce
Confidence 5566555 8899999999999999999999999999997777 55555 3343 4445555543 48999999999
Q ss_pred EEEEEC-CCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEE
Q 009597 352 IVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 430 (531)
Q Consensus 352 I~iwd~-~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s 430 (531)
|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||++++++...+.. |...|++++|++++.+|++
T Consensus 227 iriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~-hs~~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 227 LRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG-HSDGISGLAFSPDGNLLVS 305 (456)
T ss_pred EEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec-cCCceEEEEECCCCCEEEE
Confidence 999999 55689999999999999999999999999999999999999999988888865 9999999999999999999
Q ss_pred EEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCc---EEE
Q 009597 431 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV---CIG 507 (531)
Q Consensus 431 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~---V~~ 507 (531)
++.|+.|+|||+.++... ....+.++.....+.++.|+|++.+|++++.|+.+++||+..+++...+.+|... +.+
T Consensus 306 ~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS 384 (456)
T ss_pred cCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEec
Confidence 999999999999987632 2344455543326889999999999999999999999999999999999999875 333
Q ss_pred EEEecCCCCEEEEEeCCCCEEeeC
Q 009597 508 CEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 508 v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
...++ ++.++++|+.|+.|++||
T Consensus 385 ~~~~~-~~~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 385 PTLST-GGKLIYSGSEDGSVYVWD 407 (456)
T ss_pred ccccC-CCCeEEEEeCCceEEEEe
Confidence 34455 788999999999999997
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=6.3e-31 Score=251.52 Aligned_cols=240 Identities=22% Similarity=0.450 Sum_probs=203.9
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEcc-CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 361 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~ 361 (531)
-+.+|..|.|.|+|+.|++|+..|.+.+|+..+......+. +...+..+.++.+ +..+++|+.+|.|++|+.....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~---g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHN---GTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccC---CCEEEEcCCCceEEecccchhh
Confidence 45689999999999999999999999999974322111111 2334455555553 4689999999999999987554
Q ss_pred eeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEE
Q 009597 362 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 441 (531)
Q Consensus 362 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd 441 (531)
.......|...|.+++|+|+...|+++|+||+|+|||...++....+ .+|.-.|.+++|||...+|++++.|+.|++||
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 44444445599999999999999999999999999999998877777 45999999999999999999999999999999
Q ss_pred cCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEE
Q 009597 442 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 521 (531)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~ 521 (531)
.+++.++ .++.+|. ..|..+.|++++++|++++.|..++++|+++.+.+.++++|...|+++.|||....+|.+|
T Consensus 251 prSg~cl---~tlh~HK--ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 251 PRSGSCL---ATLHGHK--NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred CCCcchh---hhhhhcc--ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 9999776 4455564 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEeeC
Q 009597 522 GWDGLIKYWD 531 (531)
Q Consensus 522 s~Dg~I~iWD 531 (531)
|.||.|..|.
T Consensus 326 g~Dgsvvh~~ 335 (464)
T KOG0284|consen 326 GSDGSVVHWV 335 (464)
T ss_pred cCCCceEEEe
Confidence 9999999984
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.8e-28 Score=237.31 Aligned_cols=245 Identities=31% Similarity=0.527 Sum_probs=211.5
Q ss_pred eEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcce-EEEEccCCCCCcEEEEeeCCCeEEEE
Q 009597 277 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQW 355 (531)
Q Consensus 277 ~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~dg~I~iw 355 (531)
++++.+|.++|++++|+|++++|++++.||.|++|++.+++....+..+.... .+.+.+.. ..+++++.+|.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG---TYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC---CEEEEEcCCCeEEEE
Confidence 45678999999999999999999999999999999999888777765544333 55555533 579999999999999
Q ss_pred ECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCC
Q 009597 356 DMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 435 (531)
Q Consensus 356 d~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg 435 (531)
|+.+++.+..+..|...|.++.|+++++++++++.|+.|++||+++......+. .|...+.+++|+|++.++++++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 999988889999999999999999998888888889999999999887776665 4788899999999999998888899
Q ss_pred eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCC
Q 009597 436 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 515 (531)
Q Consensus 436 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~ 515 (531)
.|.+||++....+. .+..| ...+.++.|+|+++.|++++.+|.|++||++.++.+..+..|...+.++.|+| ++
T Consensus 158 ~i~i~d~~~~~~~~---~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~ 231 (289)
T cd00200 158 TIKLWDLRTGKCVA---TLTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DG 231 (289)
T ss_pred cEEEEEccccccce---eEecC--ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CC
Confidence 99999998765443 33344 34588899999999999999999999999999999999988999999999999 57
Q ss_pred CEEEEEeCCCCEEeeC
Q 009597 516 SKVATCGWDGLIKYWD 531 (531)
Q Consensus 516 ~~l~t~s~Dg~I~iWD 531 (531)
.++++++.||.|++||
T Consensus 232 ~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 232 YLLASGSEDGTIRVWD 247 (289)
T ss_pred cEEEEEcCCCcEEEEE
Confidence 7888888899999997
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=8.7e-30 Score=259.61 Aligned_cols=283 Identities=22% Similarity=0.381 Sum_probs=229.7
Q ss_pred HHHHHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecC-ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEE
Q 009597 242 KKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 320 (531)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~g-H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~ 320 (531)
...+++++..++++.+........+++|+..++++++.++. |++||.-++|+|.+..|++|+.|+.|+|||+..+.+..
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 34567788888888898999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EccC-CCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCce-eEEEcc------------------------------
Q 009597 321 TFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQ------------------------------ 368 (531)
Q Consensus 321 ~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~-~~~~~~------------------------------ 368 (531)
.|.. +..+..+.|++.... .+|++|..|+.|++||+++... +..+..
T Consensus 142 ~fkG~gGvVssl~F~~~~~~-~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd 220 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNR-WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWD 220 (775)
T ss_pred EecCCCceEEEEEeCCccch-hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEee
Confidence 9987 445566778877654 7899999999999999984432 223333
Q ss_pred --------------------------------------------------------------------------------
Q 009597 369 -------------------------------------------------------------------------------- 368 (531)
Q Consensus 369 -------------------------------------------------------------------------------- 368 (531)
T Consensus 221 ~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vt 300 (775)
T KOG0319|consen 221 LVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVT 300 (775)
T ss_pred hhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEE
Confidence
Q ss_pred ---------------------------------------------------------------cCCCeeEEEEecCCCEE
Q 009597 369 ---------------------------------------------------------------HLGAVNTITFVDSNRRF 385 (531)
Q Consensus 369 ---------------------------------------------------------------h~~~I~~l~~sp~~~~l 385 (531)
|...|.++....+|-+|
T Consensus 301 aeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 301 AEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred ccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEE
Confidence 44444444433344455
Q ss_pred EEEeCCCCEEEEEcCCC------------------------------------e---------------EEE----EeeC
Q 009597 386 VTSSDDKSLRVWEFGIP------------------------------------V---------------VIK----YISE 410 (531)
Q Consensus 386 ~s~s~Dg~I~iwd~~~~------------------------------------~---------------~~~----~~~~ 410 (531)
+|||.|+++++|.++.. . ++. +...
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 55555555555533100 0 000 0112
Q ss_pred CCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009597 411 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 490 (531)
Q Consensus 411 ~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 490 (531)
.|...|.|++++|+.++|++||.|.+.+||++... .....+.||... +.++.|+|..+.|+++|.|++|+||.+.
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~---~l~~vLsGH~RG--vw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL---RLLGVLSGHTRG--VWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccCc---eEEEEeeCCccc--eEEEEeccccceeEeccCCceEEEEEec
Confidence 36778999999999999999999999999999854 445778999654 8999999999999999999999999999
Q ss_pred CCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 491 SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 491 ~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+..++.+|.+|...|..+.|.. ++..|++|+.||.|++||
T Consensus 536 ~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWN 575 (775)
T ss_pred cceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEe
Confidence 9999999999999999999999 888999999999999997
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=7.1e-29 Score=241.37 Aligned_cols=275 Identities=22% Similarity=0.314 Sum_probs=226.6
Q ss_pred HHHHHhhhhc-cCCCCCCCceeeeeeccc--Ceee--EEe------cC----ccCceEEEEEccCCCEEEEEecCCeEEE
Q 009597 246 EEYAKKKEEK-GNAGGEKGEHVEDKSTFH--GKCM--RTY------MG----HSKAVRDISFCNDGTKFLTASYDKNIKY 310 (531)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~~~i~~~~~~~--~~~~--~~l------~g----H~~~V~~l~fspdg~~l~s~s~Dg~I~v 310 (531)
...+|.+... +++.++.+...++|+... .++. ..| -+ .+..|++|+|+.+|..||+|+.||.++|
T Consensus 182 ~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ri 261 (524)
T KOG0273|consen 182 FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARI 261 (524)
T ss_pred EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEE
Confidence 3445666555 677788888888887653 1111 111 12 2368999999999999999999999999
Q ss_pred EeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeC
Q 009597 311 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 390 (531)
Q Consensus 311 Wd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~ 390 (531)
|+. +|..+.++..++. .++.+.+.. ++++|++++.|+++.+||..+++..+.+..|..+-..|.|-. ...|++++.
T Consensus 262 w~~-~G~l~~tl~~Hkg-PI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~t 337 (524)
T KOG0273|consen 262 WNK-DGNLISTLGQHKG-PIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSST 337 (524)
T ss_pred Eec-CchhhhhhhccCC-ceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCC
Confidence 995 6677777754443 344444433 457999999999999999999999999999998878899974 457999999
Q ss_pred CCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC
Q 009597 391 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 470 (531)
Q Consensus 391 Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 470 (531)
|+.|+|+-+....++..+.. |...|.++.|+|.+.+|++++.|++++||+....... ..+..|. ..|..+.|+|
T Consensus 338 d~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~---~~l~~Hs--kei~t~~wsp 411 (524)
T KOG0273|consen 338 DGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV---HDLQAHS--KEIYTIKWSP 411 (524)
T ss_pred CceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch---hhhhhhc--cceeeEeecC
Confidence 99999999999888888876 9999999999999999999999999999998776444 4456664 3477789998
Q ss_pred C---------CCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 471 D---------GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 471 d---------g~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
. +..|++++.|++|++||+..+.+++.|..|..+|.+++|+| +++++|+|+.||.|.+|+
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWS 480 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEecc
Confidence 5 45789999999999999999999999999999999999999 899999999999999996
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.8e-30 Score=231.82 Aligned_cols=265 Identities=20% Similarity=0.359 Sum_probs=231.8
Q ss_pred hhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEE
Q 009597 253 EEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 332 (531)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 332 (531)
++-.+.++.+++.--...-.+|.-+.+|.||+++|.+.+++.+..+-++++.|-+-+|||.-+|..+.+|.+.+.+..+.
T Consensus 28 ~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~a 107 (334)
T KOG0278|consen 28 DGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVA 107 (334)
T ss_pred CceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEE
Confidence 34445555666666666667788899999999999999999998889999999999999999999999999999999999
Q ss_pred EccCCCCCcEEEEeeCCCeEEEEECCCCc-eeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC
Q 009597 333 LNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 411 (531)
Q Consensus 333 ~~~~~~~~~~l~sg~~dg~I~iwd~~t~~-~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 411 (531)
|..+. +.|++|+.+..++|||++..+ +..++.+|.+.|..+.|....+.|+++++|++||+||.+++..++.+.
T Consensus 108 f~~ds---~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-- 182 (334)
T KOG0278|consen 108 FSQDS---NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-- 182 (334)
T ss_pred ecccc---hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--
Confidence 88765 569999999999999997654 677899999999999999999999999999999999999999998886
Q ss_pred CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009597 412 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 412 ~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 491 (531)
...+|+++.++++|.+|.+ ...+.|.+||..+-..+. .+. ....|.+..++|+..++++|+.|+.++.||+.+
T Consensus 183 ~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lK---s~k---~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 183 FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLK---SYK---MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred cCCCCcceeeccCCCEEEE-ecCceeEEecccccccee---ecc---CccccccccccCCCceEEecCcceEEEEEeccC
Confidence 5678999999999987655 567889999998754442 222 234577789999999999999999999999999
Q ss_pred CeEEEEe-eccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 492 CKVFRTL-KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 492 ~~~~~~~-~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+..+..+ ++|.++|.|+.|+| ++...++||.||+|+||
T Consensus 256 geEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLW 294 (334)
T ss_pred CceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEE
Confidence 9999886 89999999999999 88899999999999999
No 40
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.7e-30 Score=231.71 Aligned_cols=274 Identities=18% Similarity=0.240 Sum_probs=232.5
Q ss_pred HHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC
Q 009597 246 EEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 325 (531)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~ 325 (531)
..+.-.+++.++.+..++....+|-..+|+.+.+|.||+++|+|+..+.+.++|+||+.|.+++|||+++|+++..+..+
T Consensus 14 TqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~ 93 (327)
T KOG0643|consen 14 TQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN 93 (327)
T ss_pred ceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC
Confidence 44555677788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEccCCCCCcEEEEee-----CCCeEEEEECC-------CCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCC
Q 009597 326 KIPYVVKLNPDDDKQNILLAGM-----SDKKIVQWDMN-------TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~sg~-----~dg~I~iwd~~-------t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~ 393 (531)
..+..+.|.+.+ ++++... ..+.|.++|++ +.++...+..+...++.+.|.|-+..|++|..||.
T Consensus 94 ~~Vk~~~F~~~g---n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~ 170 (327)
T KOG0643|consen 94 SPVKRVDFSFGG---NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS 170 (327)
T ss_pred CeeEEEeeccCC---cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc
Confidence 999999998865 4455443 34789999998 45678888888999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCC
Q 009597 394 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 473 (531)
Q Consensus 394 I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 473 (531)
|.+||.+++.........|...|+.++++|+..++++++.|.+-++||.++-..+ +++.. ...+++.+++|-..
T Consensus 171 is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~---Kty~t---e~PvN~aaisP~~d 244 (327)
T KOG0643|consen 171 ISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL---KTYTT---ERPVNTAAISPLLD 244 (327)
T ss_pred EEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE---EEeee---cccccceecccccc
Confidence 9999999987776666679999999999999999999999999999999886444 34432 35588899999888
Q ss_pred EEEEEeCCCc--E------------EEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 474 FVMSGDGEGK--C------------WFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 474 ~l~sgs~dg~--I------------~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
+++.|+...- | ++|++-..+.+..+++|-++|++++||| ++...++||.||.|++
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRL 313 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEE
Confidence 8887764322 2 2223223345677899999999999999 7788999999999987
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.1e-30 Score=244.86 Aligned_cols=229 Identities=26% Similarity=0.482 Sum_probs=198.7
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCce
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 362 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~ 362 (531)
....|.|+.+. ...+++|..|++|+|||..+..++..+ .++...++++..+. .++++|++|.+|++||.+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCch
Confidence 56789999994 456999999999999999998888887 56666777777754 5899999999999999999999
Q ss_pred eEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEE--EEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEE
Q 009597 363 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 440 (531)
Q Consensus 363 ~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iw 440 (531)
+.++.+|...|..+.|+ +.+++++|.|.+|.+||+..+..+ ..+..+|...|..+.|+ .+++++++.|.+|++|
T Consensus 270 l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVW 345 (499)
T ss_pred hhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEE
Confidence 99999999999999996 679999999999999999887643 22334688899999986 5699999999999999
Q ss_pred EcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEE
Q 009597 441 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 520 (531)
Q Consensus 441 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t 520 (531)
++.+...+ ..+.+|..+ |-|+.+ .|+++++|++|.+|++||+..|.+++.+.+|+.-|.++.|. ...+++
T Consensus 346 ~~st~efv---Rtl~gHkRG--IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd---~krIVS 415 (499)
T KOG0281|consen 346 STSTCEFV---RTLNGHKRG--IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVS 415 (499)
T ss_pred eccceeee---hhhhccccc--ceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec---Cceeee
Confidence 99987554 667788644 544554 58999999999999999999999999999999999999995 478999
Q ss_pred EeCCCCEEeeC
Q 009597 521 CGWDGLIKYWD 531 (531)
Q Consensus 521 ~s~Dg~I~iWD 531 (531)
|+.||+|++||
T Consensus 416 GaYDGkikvWd 426 (499)
T KOG0281|consen 416 GAYDGKIKVWD 426 (499)
T ss_pred ccccceEEEEe
Confidence 99999999998
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=9e-28 Score=269.80 Aligned_cols=256 Identities=18% Similarity=0.217 Sum_probs=206.8
Q ss_pred eeeeecccCeeeEE-----ecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC----c----EEEEccCCCcceEEE
Q 009597 266 VEDKSTFHGKCMRT-----YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG----Q----VIRTFSTGKIPYVVK 332 (531)
Q Consensus 266 i~~~~~~~~~~~~~-----l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~----~----~i~~~~~~~~~~~~~ 332 (531)
+..|+....+.... +.+|...|.+++|+|+|++|++|+.|+.|+||++... . .+..+........+.
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 539 (793)
T PLN00181 460 CKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGIC 539 (793)
T ss_pred hhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEE
Confidence 44444444443333 3459999999999999999999999999999997542 1 122233333334445
Q ss_pred EccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC
Q 009597 333 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 411 (531)
Q Consensus 333 ~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 411 (531)
+.+. .+.+|++++.||.|++||+.+++.+..+..|.+.|++++|+| ++.+|++|+.|++|++||++++..+..+.
T Consensus 540 ~~~~--~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-- 615 (793)
T PLN00181 540 WNSY--IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-- 615 (793)
T ss_pred eccC--CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--
Confidence 5443 346899999999999999999999999999999999999997 78899999999999999999988877765
Q ss_pred CCCCccEEEEe-CCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009597 412 HMHSMPSISLH-PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 490 (531)
Q Consensus 412 ~~~~v~~v~~s-p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 490 (531)
+...+.++.|+ +++.+|++|+.||.|++||++.... ....+.+|. ..|.++.|. ++.+|++++.|+.|+|||++
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h~--~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHS--KTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--cceEecCCC--CCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 34678899995 4799999999999999999987532 223455664 458889997 78899999999999999997
Q ss_pred C------CeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 491 S------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 491 ~------~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
. .+++..+.+|...+..+.|+| ++.+|++|+.||.|++||
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEE
Confidence 4 367888999999999999999 678999999999999996
No 43
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.8e-28 Score=232.91 Aligned_cols=268 Identities=19% Similarity=0.349 Sum_probs=224.7
Q ss_pred hccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCC---CEEEEEecCCeEEEEeCCCCcEEEEc-c--CCCc
Q 009597 254 EKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDG---TKFLTASYDKNIKYWDTETGQVIRTF-S--TGKI 327 (531)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg---~~l~s~s~Dg~I~vWd~~t~~~i~~~-~--~~~~ 327 (531)
.+-..+|..++.+++|+. .|+++.++.||.++|.+++|.... ..|+++|.|.++++|.++.+...-.. . .+|.
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc
Confidence 456678899999999996 699999999999999998886533 35999999999999999877543221 1 1444
Q ss_pred ceEEEEccCCCCCcEEEEeeCCCeEEEEECC-------------------------CCceeEEEcccCCCeeEEEEecCC
Q 009597 328 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-------------------------TKEITQEYDQHLGAVNTITFVDSN 382 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~-------------------------t~~~~~~~~~h~~~I~~l~~sp~~ 382 (531)
..+-++.... .+..+++|+.|..|.||+.. ++.++.++.+|..+|.++.|++ .
T Consensus 194 ~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~ 271 (423)
T KOG0313|consen 194 RSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A 271 (423)
T ss_pred cceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C
Confidence 4444444333 34689999999999999931 1234677899999999999998 7
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccc
Q 009597 383 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 462 (531)
Q Consensus 383 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 462 (531)
..++++|.|.+|+.||+.++..+..+. ....+.|+.++|..++|++|+.|..|++||.+++.--.....+.+|. .+
T Consensus 272 ~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~--nw 347 (423)
T KOG0313|consen 272 TVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK--NW 347 (423)
T ss_pred CceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch--hh
Confidence 789999999999999999998888776 46789999999999999999999999999999876556667889996 58
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-EEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 463 ACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 463 v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
|..+.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|...|.++.|.. +..+++||.|++|+|+
T Consensus 348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIF 415 (423)
T ss_pred hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEe
Confidence 9999999965 457889999999999999988 9999999999999999985 5689999999999986
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=250.22 Aligned_cols=243 Identities=23% Similarity=0.467 Sum_probs=211.7
Q ss_pred EEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEEC
Q 009597 278 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 357 (531)
Q Consensus 278 ~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~ 357 (531)
.++.||...|+++++|.+...++||+ .+.|+||+..+.+|++++..+ ...+..|.|. .++++.|...|.+.+||+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpg---d~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-YILASKFVPG---DRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-cEEEEEecCC---CceEEEeccCCceEEEEe
Confidence 56789999999999999987777776 569999999999999999877 4455555553 368999999999999999
Q ss_pred CCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC-----CeEEEEeeC------CCCCCccEEEEeCCCC
Q 009597 358 NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-----PVVIKYISE------PHMHSMPSISLHPNTN 426 (531)
Q Consensus 358 ~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~-----~~~~~~~~~------~~~~~v~~v~~sp~~~ 426 (531)
.+...+.++..|.++|++++.+|+++.+++||.|++|++||+.- +...+.+.. .-...|.|+.++|+++
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999742 111111111 1356799999999999
Q ss_pred EEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEE
Q 009597 427 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI 506 (531)
Q Consensus 427 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 506 (531)
+|+++-.|++|+||-+.+- .-.-.+.||..+ |.|+.+|||++++++|+.|.+|+||-+.-|.|-+++-+|...|.
T Consensus 522 ~LaVsLLdnTVkVyflDtl---KFflsLYGHkLP--V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTL---KFFLSLYGHKLP--VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred EEEEEeccCeEEEEEecce---eeeeeecccccc--eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence 9999999999999999874 334567889654 99999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 507 GCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 507 ~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
++.|.| ...+++|||.|+.|+.||
T Consensus 597 ~V~F~P-~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 597 SVQFLP-KTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred EEEEcc-cceeEEEecCcceEEeec
Confidence 999999 888999999999999997
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=227.29 Aligned_cols=247 Identities=21% Similarity=0.396 Sum_probs=208.9
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCC-CcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEE
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIV 353 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~ 353 (531)
.++..+.||.+.|..+.|+|+|.+|+||+.|..|.+|++.. .+-...++ ++...++.+.+..+ ++.+++++.|.+|+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d-~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRD-GSHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccC-CCEEEEecCCceEE
Confidence 34567889999999999999999999999999999999643 33344443 56666666666554 36899999999999
Q ss_pred EEECCCCceeEEEcccCCCeeEEEEecCCC-EEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEE
Q 009597 354 QWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432 (531)
Q Consensus 354 iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s 432 (531)
.||+++|+.++.++.|..-|+.+.-+.-|. ++.+++.|+++++||+++...++.+. ....++++.|...+..+.+|+
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeecc
Confidence 999999999999999999999999665554 56688999999999999988887764 467899999999999999999
Q ss_pred cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeeccCC----c
Q 009597 433 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS----CKVFRTLKCHEG----V 504 (531)
Q Consensus 433 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~----~~~~~~~~~h~~----~ 504 (531)
-|+.|++||++....+ ..+.||. ..|+.+..+++|.++.+-+.|.++++||++. .+++..+.+|.. .
T Consensus 194 Idn~ikvWd~r~~d~~---~~lsGh~--DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGL---YTLSGHA--DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred ccCceeeeccccCcce---EEeeccc--CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 9999999999876444 5677884 5699999999999999999999999999984 456777877643 4
Q ss_pred EEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 505 CIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 505 V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
...++|+| +...+..|+.|..+++||
T Consensus 269 lL~cswsp-~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 269 LLKCSWSP-NGTKITAGSADRFVYVWD 294 (338)
T ss_pred cceeeccC-CCCccccccccceEEEee
Confidence 57889999 888999999999999997
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-28 Score=255.11 Aligned_cols=271 Identities=19% Similarity=0.283 Sum_probs=232.7
Q ss_pred HHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc
Q 009597 249 AKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP 328 (531)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~ 328 (531)
..-+...-..++--.+.|..|+..-+.++..|.+|.++|+.|+|+|.+.+|+||+.|..|+||+..+.+|+.++. +|..
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~-GHlD 94 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL-GHLD 94 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc-cccc
Confidence 334444445556677899999999999999999999999999999999999999999999999999999999884 4444
Q ss_pred e--EEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC-----
Q 009597 329 Y--VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI----- 401 (531)
Q Consensus 329 ~--~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~----- 401 (531)
+ .+.|+..- ..+++++.|.+|+||+..+++++..+.+|...|.|..|+|....++++|-|.+|||||+..
T Consensus 95 YVRt~~FHhey---PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 95 YVRTVFFHHEY---PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred eeEEeeccCCC---ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 4 44444433 5899999999999999999999999999999999999999999999999999999999831
Q ss_pred -----------------------CeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCc
Q 009597 402 -----------------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 458 (531)
Q Consensus 402 -----------------------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 458 (531)
...++.+.++|...|.-++|+|.-.+|++|+.|..|++|.+...+ ...+.+..||.
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~ 250 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHY 250 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-ceeehhhhccc
Confidence 124566778899999999999999999999999999999987543 34556788886
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCE
Q 009597 459 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 527 (531)
Q Consensus 459 ~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I 527 (531)
+. |.++-|+|...+|++.++|+.|+|||+...+.+.+++-..+..+.++-|| ..++++.|...|.+
T Consensus 251 nn--Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 251 NN--VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLFAAGHDSGMI 316 (1202)
T ss_pred CC--cceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-CcceeeeecCCceE
Confidence 54 88999999999999999999999999999999999987778889999999 77777766655543
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.7e-27 Score=265.97 Aligned_cols=277 Identities=12% Similarity=0.209 Sum_probs=219.2
Q ss_pred HHHHhhhhccCCCCCCCceeeeeeccc----C----eeeEEecCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCCCc
Q 009597 247 EYAKKKEEKGNAGGEKGEHVEDKSTFH----G----KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQ 317 (531)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~----~----~~~~~l~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~ 317 (531)
.+.+.+++..+++++.++.|++|+... + .++..+. +...|.+++|++ ++.+|++++.||+|+|||+.+++
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~ 566 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ 566 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe
Confidence 345667777888899999999998532 1 1233444 346899999987 47899999999999999999999
Q ss_pred EEEEccCCC-cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEe-cCCCEEEEEeCCCCEE
Q 009597 318 VIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-DSNRRFVTSSDDKSLR 395 (531)
Q Consensus 318 ~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~s-p~~~~l~s~s~Dg~I~ 395 (531)
.+..+..+. .+..+.|++ ..+.+|++|+.||.|++||++++..+..+..+ ..|.++.|+ +++.+|++|+.|+.|+
T Consensus 567 ~~~~~~~H~~~V~~l~~~p--~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~ 643 (793)
T PLN00181 567 LVTEMKEHEKRVWSIDYSS--ADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVY 643 (793)
T ss_pred EEEEecCCCCCEEEEEEcC--CCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence 888885433 344455554 34478999999999999999999998888755 689999996 4789999999999999
Q ss_pred EEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcc---eeceeeeecCCccccceEEEEEcCCC
Q 009597 396 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF---QLNKKKRFAGHIVAGYACQVNFSPDG 472 (531)
Q Consensus 396 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~---~~~~~~~~~~~~~~~~v~~l~~spdg 472 (531)
+||++...........|...|.++.|. ++.+|++++.|++|++||++... ....+..+.+|. ..+.+++|+|++
T Consensus 644 iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~ 720 (793)
T PLN00181 644 YYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSD 720 (793)
T ss_pred EEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCC
Confidence 999987653222234588999999997 68899999999999999997532 112345677774 457789999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEe-------------eccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 473 RFVMSGDGEGKCWFWDWKSCKVFRTL-------------KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 473 ~~l~sgs~dg~I~iwd~~~~~~~~~~-------------~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.+|++|+.|+.|++|+......+..+ ..|...|.+++|+| ++..|++|+.||.|+|||
T Consensus 721 ~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 721 GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILE 791 (793)
T ss_pred CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEe
Confidence 99999999999999998765443222 23456799999999 778999999999999997
No 48
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.5e-27 Score=243.54 Aligned_cols=275 Identities=18% Similarity=0.311 Sum_probs=234.3
Q ss_pred HHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecC-CeEEEEeCCCCcEEEEccCC
Q 009597 247 EYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-KNIKYWDTETGQVIRTFSTG 325 (531)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~D-g~I~vWd~~t~~~i~~~~~~ 325 (531)
+...-+.-.+++.+-..|....+....-.+++.+.-...+|..++|+..|.+|+.|+.. |++-||+.++...+.....+
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH 349 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH 349 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc
Confidence 33444555667777777777777777788899998888999999999999999988754 79999999888776665432
Q ss_pred C-cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeE
Q 009597 326 K-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV 404 (531)
Q Consensus 326 ~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~ 404 (531)
. ...++..+++ +.++++|+.||+|+|||..++-|+.+|..|...|+.+.|+..++.++++|-||+|+.||+...+.
T Consensus 350 ~~~i~~l~YSpD---gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 350 SDRITSLAYSPD---GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccceeeEEECCC---CcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 2 2344445543 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCccEEEEeCCCCEEEEEEcCC-eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCc
Q 009597 405 IKYISEPHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 483 (531)
Q Consensus 405 ~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 483 (531)
.+.+..+......|++..|.|.++++|+.|. .|.||++.+++.+ ..+.|| .+.|.+++|+|++..|++|+.|.+
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll---DiLsGH--EgPVs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL---DILSGH--EGPVSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee---ehhcCC--CCcceeeEEccccCeEEeccccce
Confidence 9999888888899999999999999999997 6999999999655 667888 467999999999999999999999
Q ss_pred EEEEECCCC-eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 484 CWFWDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 484 I~iwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|++||+-.. ..+.++. +...+..++|+| ++.-|+.+..||.|.+||
T Consensus 502 VRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFFD 548 (893)
T ss_pred EEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEEE
Confidence 999998643 3445554 566789999999 788899999999999997
No 49
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-27 Score=242.86 Aligned_cols=274 Identities=17% Similarity=0.275 Sum_probs=234.8
Q ss_pred HHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC
Q 009597 245 AEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 324 (531)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 324 (531)
..-+.++..+.+.. ..+..+..|+..+++......-+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+..
T Consensus 180 ~nlldWss~n~laV--alg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 180 LNLLDWSSANVLAV--ALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hhHhhcccCCeEEE--EecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 34455664433333 3345789999999987777777799999999999999999999999999999999999999988
Q ss_pred CCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEE-EcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCe
Q 009597 325 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 403 (531)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~-~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~ 403 (531)
++...+.++.+. ...+.+|+.++.|.++|++..+.... +.+|...|..+.|++++++|++|+.|+.+.|||.....
T Consensus 258 ~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 258 SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 788888777775 36899999999999999998876555 88999999999999999999999999999999998777
Q ss_pred EEEEeeCCCCCCccEEEEeC-CCCEEEEE--EcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE--
Q 009597 404 VIKYISEPHMHSMPSISLHP-NTNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-- 478 (531)
Q Consensus 404 ~~~~~~~~~~~~v~~v~~sp-~~~~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-- 478 (531)
+...+.. |...|.+++|+| ...+||+| +.|++|++||..++..+..+. ....||.|.|++..+-|+++
T Consensus 335 p~~~~~~-H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd------tgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 335 PKFTFTE-HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD------TGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred ccEEEec-cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc------cCCceeeEEEcCCCCEEEEecC
Confidence 7777654 999999999999 67788875 478999999999886664332 24679999999998767664
Q ss_pred eCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 479 DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 479 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
..++.|.||++.+.+.+..+.+|...|..++++| ++..+++|+.|.++++|+
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWN 459 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEecc
Confidence 4677899999999999999999999999999999 788999999999999996
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.3e-28 Score=219.97 Aligned_cols=262 Identities=21% Similarity=0.362 Sum_probs=210.5
Q ss_pred ceeeeeecccCeeeEEec--CccCceEEEEEccC-CCEEEEEecCCeEEEEeCCC-CcEEEEccCCCcceEEEEccCCCC
Q 009597 264 EHVEDKSTFHGKCMRTYM--GHSKAVRDISFCND-GTKFLTASYDKNIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDK 339 (531)
Q Consensus 264 ~~i~~~~~~~~~~~~~l~--gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~~~~~~~~~~~~~~~ 339 (531)
|.+.+.....++-+..+. .-...+.+++|+++ .+.+++|+.||+++|||+.. ..++..++. |...+.++.+....
T Consensus 38 G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~ 116 (311)
T KOG0277|consen 38 GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVR 116 (311)
T ss_pred ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEecccccc
Confidence 445554443233232222 25678999999995 56788999999999999643 345555543 33345555555556
Q ss_pred CcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccE
Q 009597 340 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 418 (531)
Q Consensus 340 ~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~ 418 (531)
...+++++.|++|++|+...+..++++.+|...|....|+| ..+.|+++|.|+++++||++.+-....+. .|...|.|
T Consensus 117 r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~ 195 (311)
T KOG0277|consen 117 RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILC 195 (311)
T ss_pred ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEe
Confidence 67889999999999999999999999999999999999999 67899999999999999999875444444 48889999
Q ss_pred EEEeC-CCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEECCC-CeEE
Q 009597 419 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKS-CKVF 495 (531)
Q Consensus 419 v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~iwd~~~-~~~~ 495 (531)
+.|+. +.+.|++|+.|+.|++||+++-. ..+..+.+|..+ |..+.|||. ..+|++++.|-+++|||... ...+
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~A--VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~ 271 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLA--VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI 271 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceE--EEEEecCcchhhHhhhccccceEEecccccchhhh
Confidence 99998 77889999999999999999854 235566788655 899999995 56889999999999999874 4566
Q ss_pred EEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 496 RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 496 ~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.+...|+.-|..+.|++..+..+|++|+|+.++||+
T Consensus 272 e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 272 ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhhccceEEeccccccccCceeeecccccceeeec
Confidence 777789999999999999999999999999999997
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-28 Score=252.36 Aligned_cols=247 Identities=23% Similarity=0.391 Sum_probs=216.5
Q ss_pred EEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-cceEEEEccCCCCCcEEEEeeCCCeEEEEE
Q 009597 278 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWD 356 (531)
Q Consensus 278 ~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd 356 (531)
..|..-+..|.+++|+|...+++++-..|.|.+||.+-+.++..|..+. ++..+.|++.. .+|++|+.|-+|++|+
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q---plFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ---PLFVSGGDDYKIKVWN 79 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC---CeEEecCCccEEEEEe
Confidence 3455667899999999999999999999999999999999999996554 45678888754 5899999999999999
Q ss_pred CCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCe
Q 009597 357 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 436 (531)
Q Consensus 357 ~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~ 436 (531)
..+.+++.++.+|.+.|..+.|++.-.+++++|+|.+|+||++.+..++..+. +|.+.|.|..|+|....++++|.|.+
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccceEEEecccce
Confidence 99999999999999999999999999999999999999999999999998876 59999999999999999999999999
Q ss_pred EEEEEcCCccee--------------------------ceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009597 437 ILIYSTRERFQL--------------------------NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 490 (531)
Q Consensus 437 I~iwd~~~~~~~--------------------------~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 490 (531)
|+|||+..-+.- .....+.||..+ |+-++|+|.-.+|++|+.|..|++|.+.
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG--VNwaAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG--VNWAAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc--cceEEecCCcceEEecCCcceeeEEEec
Confidence 999998541100 112235566533 7779999999999999999999999987
Q ss_pred CCeE--EEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 491 SCKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 491 ~~~~--~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
..+. +.+..+|...|.++.||| ...++++.|.|++|+|||
T Consensus 237 etKaWEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 237 ETKAWEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred cccceeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEe
Confidence 6553 456779999999999999 888999999999999998
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=239.76 Aligned_cols=268 Identities=19% Similarity=0.276 Sum_probs=236.2
Q ss_pred hhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-cceE
Q 009597 252 KEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYV 330 (531)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~ 330 (531)
+.+.-...+-..|.+.+|+..+...++.|.-..-+|++..|-...+++++|+.|..|+||+..+++.+..|..+. ...+
T Consensus 23 PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~ 102 (794)
T KOG0276|consen 23 PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRS 102 (794)
T ss_pred CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceee
Confidence 333444556778899999999999999999999999999999999999999999999999999999999996543 3566
Q ss_pred EEEccCCCCCcEEEEeeCCCeEEEEECCCC-ceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEe
Q 009597 331 VKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYI 408 (531)
Q Consensus 331 ~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~-~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 408 (531)
+..+|.. .++++++.|-+|++||.+.. .+.++|.+|...|.+++|+| |.+.|+++|-|++|+||.+.++.+..++
T Consensus 103 iavHPt~---P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl 179 (794)
T KOG0276|consen 103 IAVHPTL---PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL 179 (794)
T ss_pred eeecCCC---CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence 7777754 47999999999999999754 78899999999999999999 6778999999999999999999888887
Q ss_pred eCCCCCCccEEEEeCC--CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 009597 409 SEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 486 (531)
Q Consensus 409 ~~~~~~~v~~v~~sp~--~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~i 486 (531)
. +|...|.|+++-+. ..+|++|+.|.+|+|||.++..++ +++.||... |..+.|+|.-.++++|++||+++|
T Consensus 180 ~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV---~TLeGHt~N--vs~v~fhp~lpiiisgsEDGTvri 253 (794)
T KOG0276|consen 180 E-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV---QTLEGHTNN--VSFVFFHPELPIIISGSEDGTVRI 253 (794)
T ss_pred e-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH---HHhhccccc--ceEEEecCCCcEEEEecCCccEEE
Confidence 6 69999999999884 479999999999999999998655 678899655 888999999999999999999999
Q ss_pred EECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 487 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 487 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
|+-.+-++..++.-.-+.|.|++-.+ +...++.|...|.|.+
T Consensus 254 Whs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 254 WNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred ecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence 99999999998887788999999998 6677888888887654
No 53
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4.6e-27 Score=246.75 Aligned_cols=261 Identities=24% Similarity=0.391 Sum_probs=224.9
Q ss_pred hccCCCCCCCceeeeeecccCeeeEE-ecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEE
Q 009597 254 EKGNAGGEKGEHVEDKSTFHGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 332 (531)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~~~~~-l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 332 (531)
......+..+.++..|+...+..+.+ +.||.+.|.+++|..-+.+|++|+.|.+++|||..+|+|..++. ++...+.+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~ 296 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRC 296 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec-CCCceEEE
Confidence 33455678888999999999999999 99999999999998767899999999999999999999999996 44444444
Q ss_pred EccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCC
Q 009597 333 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 412 (531)
Q Consensus 333 ~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 412 (531)
+.... ..+++|+.|.+|++|++.++..+..+.+|.++|.++..+ +.++++|+.|++|++||+.+++++..+.. |
T Consensus 297 ~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H 370 (537)
T KOG0274|consen 297 LTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG-H 370 (537)
T ss_pred EEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC-C
Confidence 44322 468889999999999999999999999999999999997 88999999999999999999999998876 9
Q ss_pred CCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 009597 413 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 492 (531)
Q Consensus 413 ~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 492 (531)
...|.++.+.+. ..+++|+.|++|++||+++.. .....+.+|. ..+. .+...+++|++++.|+.|++||..++
T Consensus 371 ~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~--~~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 371 TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHT--SLVS--SLLLRDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred cceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCc--cccc--ccccccceeEeccccccEEEeecccC
Confidence 999999988765 899999999999999999872 3335667774 3343 33456889999999999999999999
Q ss_pred eEEEEeec-cCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 493 KVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 493 ~~~~~~~~-h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
++++.+.+ |.+.|..+++. ...+++++.||.+++||
T Consensus 444 ~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 444 ECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEe
Confidence 99999998 67888888775 35788999999999997
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-26 Score=214.79 Aligned_cols=249 Identities=18% Similarity=0.320 Sum_probs=206.6
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCc-ceEEEEccCCCCCcEEEEeeC--CCe
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMS--DKK 351 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~--dg~ 351 (531)
+..+.|..-...|.+|.|+++|.+|++++.|.+|+|||..+++.++++...+. +...+|.... +.++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~---~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS---NTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC---ceEEEccCCCCCc
Confidence 34455666678999999999999999999999999999999999999976654 3444554433 34666665 889
Q ss_pred EEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEE
Q 009597 352 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 431 (531)
Q Consensus 352 I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 431 (531)
|+..++.+.+.++.|.+|...|++|..+|-+..|++++.|++|++||++...+...+. ...-..++|.|+|-++|++
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPEGLIFALA 158 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCCCcEEEEe
Confidence 9999999999999999999999999999999999999999999999999887776663 4456778999999999999
Q ss_pred EcCCeEEEEEcCCcceeceeeeecCC-ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcE---EE
Q 009597 432 SLDNQILIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC---IG 507 (531)
Q Consensus 432 s~Dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V---~~ 507 (531)
.....|++||++.-.. .+...+.-. ........|.|||||++|+.++..+.+++.|.-+|..+.++..+...- ..
T Consensus 159 ~~~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred cCCCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 9888999999987421 112222211 223557889999999999999999999999999999999998775532 57
Q ss_pred EEEecCCCCEEEEEeCCCCEEeeC
Q 009597 508 CEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 508 v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.+|.| ++.++++|+.||+|.+|+
T Consensus 238 a~ftP-ds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 238 ATFTP-DSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EEECC-CCcEEEEecCCCcEEEEE
Confidence 88999 889999999999999996
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.6e-27 Score=244.16 Aligned_cols=250 Identities=17% Similarity=0.299 Sum_probs=198.2
Q ss_pred eeEEec-CccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcE------------------------------E--E--
Q 009597 276 CMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV------------------------------I--R-- 320 (531)
Q Consensus 276 ~~~~l~-gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~------------------------------i--~-- 320 (531)
....+. .|.++|.++.||+||+|||+||.|+.|+||.+...+. + .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345566 8999999999999999999999999999998644000 0 0
Q ss_pred -----------Ec--------------cCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeE
Q 009597 321 -----------TF--------------STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 375 (531)
Q Consensus 321 -----------~~--------------~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~ 375 (531)
.+ -.+|..-++.++|.. .++|++++.|.+|++|++...+++..|. |.+.|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 00 023344455666653 4789999999999999999999999997 9999999
Q ss_pred EEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeee
Q 009597 376 ITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF 454 (531)
Q Consensus 376 l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 454 (531)
|+|+| |.++|++|+-|+.||||++...+...... -..-|++++|.|+|++.++|+.+|.+++|++...+........
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 99999 88999999999999999998877665543 3478999999999999999999999999999875443222111
Q ss_pred c--C-CccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeeccCC--cEEEEEEecCCCCEEEEEeCCCCEE
Q 009597 455 A--G-HIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIK 528 (531)
Q Consensus 455 ~--~-~~~~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~l~t~s~Dg~I~ 528 (531)
. + ......|+.+.|.|.. ..|++.+.|..|||+|.+...++..|+++.. .-....|+. ++.+|++++.|..|+
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVY 571 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEE
Confidence 1 0 1112358999998743 3577888999999999999999999997643 335678888 889999999999999
Q ss_pred eeC
Q 009597 529 YWD 531 (531)
Q Consensus 529 iWD 531 (531)
||+
T Consensus 572 iW~ 574 (712)
T KOG0283|consen 572 IWK 574 (712)
T ss_pred EEe
Confidence 996
No 56
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=9.1e-26 Score=236.59 Aligned_cols=228 Identities=17% Similarity=0.230 Sum_probs=180.5
Q ss_pred EecCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCCCc-------EEEEccCC-CcceEEEEccCCCCCcEEEEeeCC
Q 009597 279 TYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQ-------VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSD 349 (531)
Q Consensus 279 ~l~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~-------~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~d 349 (531)
.+.||.+.|++++|+| ++++|++|+.|++|+|||+.++. .+..+..+ ..+..+.|++. ..++|++|+.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~--~~~iLaSgs~D 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS--AMNVLASAGAD 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC--CCCEEEEEeCC
Confidence 5789999999999999 88899999999999999997653 34455432 33455666654 34689999999
Q ss_pred CeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCC-ccEEEEeCCCCEE
Q 009597 350 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS-MPSISLHPNTNWL 428 (531)
Q Consensus 350 g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-v~~v~~sp~~~~l 428 (531)
+.|+|||+++++.+..+..|...|.+++|+|++.+|++++.|++|+|||++++..+..+.. |... +..+.|.+++..|
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRKDLI 226 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec-CCCCcceEEEEcCCCCeE
Confidence 9999999999999999999999999999999999999999999999999999987776653 5443 4567888888777
Q ss_pred EEEE----cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeec-cC
Q 009597 429 AAQS----LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC-HE 502 (531)
Q Consensus 429 ~s~s----~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~-h~ 502 (531)
++++ .|+.|++||+++.... ......+. ...+....|++++.+|++|+ .|+.|++||+.+++++..... +.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p--~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASP--YSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCc--eeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCC
Confidence 7654 4789999999865322 12222221 23355577999999999887 599999999999988776653 44
Q ss_pred CcEEEEEEec
Q 009597 503 GVCIGCEWHP 512 (531)
Q Consensus 503 ~~V~~v~~~p 512 (531)
.++.+++|.|
T Consensus 304 ~~~~g~~~~p 313 (493)
T PTZ00421 304 EPHKGLCMMP 313 (493)
T ss_pred CCCcceEecc
Confidence 5677888887
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=228.45 Aligned_cols=272 Identities=19% Similarity=0.299 Sum_probs=227.0
Q ss_pred HhhhhccCCCCCCCceeeeeecccCe--eeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCc
Q 009597 250 KKKEEKGNAGGEKGEHVEDKSTFHGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI 327 (531)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~ 327 (531)
+-+....+++|+.+..|..|.+...+ .+.+|.|..++|+++.|.++++++++++.|+.+++|++...+...++.. |.
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-Ht 261 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HT 261 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc-cc
Confidence 33444567788999999999998877 7889999999999999999999999999999999999999999999966 55
Q ss_pred ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 009597 328 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 407 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 407 (531)
..+.+..+.-.. ..+++|+.|.+|++||+....+..++. ....++.|..+ ...+++|..|++|++||.+.+.....
T Consensus 262 dkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s 337 (459)
T KOG0288|consen 262 DKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS 337 (459)
T ss_pred cceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeE
Confidence 555555544332 239999999999999999988887765 33556667665 56789999999999999999988877
Q ss_pred eeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 009597 408 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 487 (531)
Q Consensus 408 ~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iw 487 (531)
+. ..+.|+++..++++..|++++.|.++.++|+++........ -.+...+...+.+.|||++.|+++|+.||.|+||
T Consensus 338 v~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 338 VP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIW 414 (459)
T ss_pred ee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee-ccccccccccceeEECCCCceeeeccCCCcEEEE
Confidence 75 34599999999999999999999999999999865443322 2233334457789999999999999999999999
Q ss_pred ECCCCeEEEEeeccCC--cEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 488 DWKSCKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 488 d~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
++.++++...+..... .|++++|+| .+..|++++.++.+.+|
T Consensus 415 ~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred EccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 9999999998875444 599999999 78889999999999999
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1e-27 Score=222.20 Aligned_cols=283 Identities=19% Similarity=0.310 Sum_probs=236.6
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCceeeeeeccc------------------CeeeEEecCccCceEEEEEccCCCEEEEE
Q 009597 241 QKKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFH------------------GKCMRTYMGHSKAVRDISFCNDGTKFLTA 302 (531)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~~~l~gH~~~V~~l~fspdg~~l~s~ 302 (531)
++...++.+.++++.+.++|+.+..|++.++.. ...+++|..|..+|+++.|+|....|++|
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 444556677889999999999999999887652 15689999999999999999999999999
Q ss_pred ecCCeEEEEeCCCCcE---EEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEE---cccCCCeeEE
Q 009597 303 SYDKNIKYWDTETGQV---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTI 376 (531)
Q Consensus 303 s~Dg~I~vWd~~t~~~---i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~---~~h~~~I~~l 376 (531)
+.|++|+++|+..... .+.|...+.+.+++|+|.+ .+|++|.....+++||+++.++...- ..|.+.|+++
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG---efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG---EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC---ceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 9999999999976443 4455566777888888854 58999999999999999998876544 5689999999
Q ss_pred EEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCC-CccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeec
Q 009597 377 TFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 455 (531)
Q Consensus 377 ~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 455 (531)
.+++.+++.+++|.||.|+|||--+++++..+...|.+ .|.+..|..+++++++.+.|..+++|.+.++..+. .+.
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~---~Yt 344 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK---EYT 344 (430)
T ss_pred EecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE---EEe
Confidence 99999999999999999999999999999988877765 58899999999999999999999999999987663 343
Q ss_pred CCcc---ccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEee-ccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 456 GHIV---AGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 456 ~~~~---~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
|... ...-+...|+....|++.-+ ..+.++-||.++...+..+. +|.+.|..+.-+| .+..++|||.|-.+|+|
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRARFW 423 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccceeeee
Confidence 3311 12233456888888888776 35789999999987766654 8999999999999 77789999999999999
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=7.9e-28 Score=235.04 Aligned_cols=299 Identities=18% Similarity=0.340 Sum_probs=231.9
Q ss_pred CCCCCCCcc-cccccccHHHHHHHHHHHHhhhhccCCCCCCCceeeeee-------------------------------
Q 009597 223 KSPWAGKKE-GVQTELSEEQKKYAEEYAKKKEEKGNAGGEKGEHVEDKS------------------------------- 270 (531)
Q Consensus 223 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------------------------- 270 (531)
..||+.... ..+.++.+++.+..+++...+.++...........+..+
T Consensus 121 ~gpWsr~~dE~~vak~~~~~~~~~de~~~k~~e~~~~~e~~~~~~ee~s~~h~k~~~dyq~r~~l~~P~dv~vnlR~~rc 200 (503)
T KOG0282|consen 121 SGPWSRYVDEKTVAKPTPEEQKQMDEIVKKRQEKKKEKEDSEHMAEESSTLHGKSLFDYQGRSYLQKPKDVGVNLREERC 200 (503)
T ss_pred CCCcccccccccccCCCcchhhhhhhhhhhhhhhccccccccccccccccccccchhhccccccccCCcccCCcccccee
Confidence 348988773 445667777777777766655554111111111111111
Q ss_pred cccCeeeEEecCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCC-CcEEEEccCCCc-ceEEEEccCCCCCcEEEEee
Q 009597 271 TFHGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET-GQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGM 347 (531)
Q Consensus 271 ~~~~~~~~~l~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~ 347 (531)
....+.++++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.++++|..+.. +..++|+.. +..|++++
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~---g~~fLS~s 277 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC---GTSFLSAS 277 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc---CCeeeeee
Confidence 113466889999999999999999 899999999999999999976 899999965443 344555543 45799999
Q ss_pred CCCeEEEEECCCCceeEEEcccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCC
Q 009597 348 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN 426 (531)
Q Consensus 348 ~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 426 (531)
.|+.|++||+++|+++..+.. ...+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.+.. |...|..+.|-+++.
T Consensus 278 fD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-HLGAILDITFVDEGR 355 (503)
T ss_pred cceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-hhhheeeeEEccCCc
Confidence 999999999999999999863 3678999999988 8899999999999999999987766644 889999999999999
Q ss_pred EEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeeccC-
Q 009597 427 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---KVFRTLKCHE- 502 (531)
Q Consensus 427 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~- 502 (531)
.+++.+.|++++||+.+....+........| ...++..+|++.++++-+.|..|.++.+... .....+.+|.
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~~h----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPEMH----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchhhc----cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 9999999999999999887655444333333 2556899999999999999999999986532 2234566774
Q ss_pred -CcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 503 -GVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 503 -~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+--..|.|+| ++++|++|+.||.+.+||
T Consensus 432 aGys~~v~fSp-DG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 432 AGYSCQVDFSP-DGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCceeeEEEcC-CCCeEEeecCCccEEEee
Confidence 3456789999 889999999999999998
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=208.66 Aligned_cols=269 Identities=20% Similarity=0.256 Sum_probs=231.7
Q ss_pred HHHHHHHhhhhccCCCCCCCceeeeeecccCeeeE--EecCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEE
Q 009597 244 YAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMR--TYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIR 320 (531)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~l~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~i~ 320 (531)
.+..+++..++..++.|.-++.+.+|+.+..+... .++||.+.|-.++|+| ....|++++.|.+|++||+..++++.
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 34556778888899999999999999998776654 4679999999999998 46789999999999999999999999
Q ss_pred EccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcC
Q 009597 321 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 400 (531)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~ 400 (531)
.+........+.+.|.+ .+++++..|..|.+.|.++.+.+...+ ..-.++-++|+.++.+|+.....|+|.|..+-
T Consensus 102 ~i~~~~eni~i~wsp~g---~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 102 RIETKGENINITWSPDG---EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred EeeccCcceEEEEcCCC---CEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 99888888888888854 579999999999999999888777665 34668889999888888888888999999999
Q ss_pred CCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC
Q 009597 401 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 480 (531)
Q Consensus 401 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 480 (531)
..+++..+.. |.....||.|+|+|++|++|+.|..+.+||+..-.++.. +..+. -.|..+.||-||++||+|++
T Consensus 178 sLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~---isRld--wpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 178 SLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC---ISRLD--WPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred cccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhhee---ecccc--CceEEEEeccCcceeeccCc
Confidence 8888887764 888999999999999999999999999999987655543 44342 34788999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCC
Q 009597 481 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 524 (531)
Q Consensus 481 dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~D 524 (531)
|..|-|=++.+|..+..++ +.++...|+||| ...+||-++.|
T Consensus 252 Dh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 252 DHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred cceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 9999999999999999987 788899999999 77777777664
No 61
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4.4e-25 Score=232.61 Aligned_cols=249 Identities=11% Similarity=0.176 Sum_probs=188.1
Q ss_pred CCCCCCceeeeeecccCeeeEEecCccCceEEEEEccC-CCEEEEEecCCeEEEEeCCCCc--------EEEEccC-CCc
Q 009597 258 AGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ--------VIRTFST-GKI 327 (531)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~--------~i~~~~~-~~~ 327 (531)
.+|+..+.+.+|+......+..+.+|.+.|.+++|+|+ +.+|+||+.|++|+|||+.++. .+..+.. ...
T Consensus 48 ~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 48 EGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 35667788999998888889999999999999999996 7899999999999999997642 2223332 233
Q ss_pred ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 009597 328 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 407 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 407 (531)
+..+.|++. ...+|++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..
T Consensus 128 V~sVaf~P~--g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 128 ISIIDWNPM--NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred EEEEEECCC--CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 455566654 34577899999999999999998887776 568899999999999999999999999999999988776
Q ss_pred eeCCCCCCccE-----EEEeCCCCEEEEEEcCC----eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE
Q 009597 408 ISEPHMHSMPS-----ISLHPNTNWLAAQSLDN----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 478 (531)
Q Consensus 408 ~~~~~~~~v~~-----v~~sp~~~~l~s~s~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 478 (531)
+. .|...+.+ ..|++++.+|++++.|+ +|+|||++...... .....+...+.+......++|.++++|
T Consensus 205 l~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl--~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 205 FH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL--VTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred Ee-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce--EEEEecCCccceEEeeeCCCCCEEEEE
Confidence 64 36655433 33458889999988774 79999998632221 222222222333333345569999999
Q ss_pred eCCCcEEEEECCCCeEEEEee--ccCCcEEEEEEecC
Q 009597 479 DGEGKCWFWDWKSCKVFRTLK--CHEGVCIGCEWHPL 513 (531)
Q Consensus 479 s~dg~I~iwd~~~~~~~~~~~--~h~~~V~~v~~~p~ 513 (531)
+.|+.|++|++..+.+ ..+. .+..++.+++|.|.
T Consensus 282 kGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 282 KGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred ECCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 9999999999987643 2222 25567889999993
No 62
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=4.3e-25 Score=217.65 Aligned_cols=263 Identities=14% Similarity=0.256 Sum_probs=213.0
Q ss_pred ceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEE--EEcc------------------
Q 009597 264 EHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI--RTFS------------------ 323 (531)
Q Consensus 264 ~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i--~~~~------------------ 323 (531)
..+.+...........|..|..+++-..|+|.|-++++|...|+|||||....+.+ .+|+
T Consensus 39 ksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI 118 (603)
T KOG0318|consen 39 KSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRI 118 (603)
T ss_pred CEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEE
Confidence 34556666667778889999999999999999999999999999999997542211 1110
Q ss_pred -------------------------CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEE
Q 009597 324 -------------------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF 378 (531)
Q Consensus 324 -------------------------~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~ 378 (531)
.++...+..+.+-+.....+++|+.|++|.+|+-...+...++..|..-|+|+.|
T Consensus 119 ~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 119 AAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred EEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence 1122223333333344567899999999999987777777888899999999999
Q ss_pred ecCCCEEEEEeCCCCEEEEEcCCCeEEEEee--CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecC
Q 009597 379 VDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG 456 (531)
Q Consensus 379 sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 456 (531)
+|||.+|++++.||+|.|||-.++..+..+. .+|.+.|.+++|+|++..|++++.|.+++|||+.+...+..+.. ..
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~-~~ 277 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM-GS 277 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec-CC
Confidence 9999999999999999999999999888876 36999999999999999999999999999999998865543322 11
Q ss_pred CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 457 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 457 ~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.. ......+.|- ...|++.+.+|.|.+++...+.++..+.+|...|+++..+| ++.+|++|+.||.|.-||
T Consensus 278 ~v-~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 278 TV-EDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWD 348 (603)
T ss_pred ch-hceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEe
Confidence 11 1222234455 66899999999999999999999999999999999999999 779999999999999997
No 63
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=208.76 Aligned_cols=247 Identities=19% Similarity=0.264 Sum_probs=199.0
Q ss_pred ccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC-CcceEEEEccCCCCCcEEEEeeCCC
Q 009597 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDK 350 (531)
Q Consensus 272 ~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg 350 (531)
++-.++..|..|.++|++++. ++.+++|||.|-+|+|||+.+...+..+..+ ....++.|.+.... ..|++|+.||
T Consensus 31 ~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~-shLlS~sdDG 107 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSK-SHLLSGSDDG 107 (362)
T ss_pred eeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcch-hheeeecCCC
Confidence 445668889999999999999 5889999999999999999988777766443 33445555543322 3699999999
Q ss_pred eEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEE
Q 009597 351 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 430 (531)
Q Consensus 351 ~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s 430 (531)
.|.+|+....+++..++.|.+.|+.|+.+|.+++-++.+.|+.++.|++-.++.-..... ....+.+.|+|.|.+|+.
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL--KNKATLVSWSPQGDHFVV 185 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc--CCcceeeEEcCCCCEEEE
Confidence 999999999999999999999999999999999999999999999999988866554443 233445999999999988
Q ss_pred EEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEE
Q 009597 431 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 510 (531)
Q Consensus 431 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~ 510 (531)
+..+ .|-||.+.+......+. ....+.++.|- ++..|++|..++.|.+||..+..++..+.+|...|.++.+
T Consensus 186 ~~~~-~i~i~q~d~A~v~~~i~------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 186 SGRN-KIDIYQLDNASVFREIE------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred Eecc-EEEEEecccHhHhhhhh------ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 7754 58899887643322111 11234445554 5678899999999999999999999999999999999985
Q ss_pred ec-CCCCEEEEEeCCCCEEeeC
Q 009597 511 HP-LEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 511 ~p-~~~~~l~t~s~Dg~I~iWD 531 (531)
.. ..+.+|+|+|.||.|+|||
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred EecCCceEEEEeccCceEEEEE
Confidence 43 2567999999999999997
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=7.7e-26 Score=222.23 Aligned_cols=218 Identities=19% Similarity=0.271 Sum_probs=170.6
Q ss_pred ccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc----EEEEccC--CCcceEEEEccCCCCCcEEEE
Q 009597 272 FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFST--GKIPYVVKLNPDDDKQNILLA 345 (531)
Q Consensus 272 ~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~----~i~~~~~--~~~~~~~~~~~~~~~~~~l~s 345 (531)
..+.+-..|++|+..|.++++.|.|.+|+|||.|.+|++||+.... ..+.+.. .|....+.+++.. ..|++
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg---~~iLv 231 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG---DQILV 231 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC---CeEEE
Confidence 3456678899999999999999999999999999999999997543 2333333 3444556666533 46777
Q ss_pred eeCCCeEEEEECCCCceeEE------------EcccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCeEEEEee---
Q 009597 346 GMSDKKIVQWDMNTKEITQE------------YDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYIS--- 409 (531)
Q Consensus 346 g~~dg~I~iwd~~t~~~~~~------------~~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~--- 409 (531)
.+....++|+|-...+.+.. -++|...++|.+|+|.. ..|++++.||++||||+...+....+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 77778899999765444332 25799999999999965 469999999999999997653222221
Q ss_pred --CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 009597 410 --EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 487 (531)
Q Consensus 410 --~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iw 487 (531)
.+..-+++.++|+|++++||+|+.||.|.+|+.++...-.....-..|.....|+||.||+||++|++-+.|+++++|
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 233456889999999999999999999999998776554445555677776789999999999999999999999999
Q ss_pred ECCCC
Q 009597 488 DWKSC 492 (531)
Q Consensus 488 d~~~~ 492 (531)
|++..
T Consensus 392 DLrq~ 396 (641)
T KOG0772|consen 392 DLRQF 396 (641)
T ss_pred ecccc
Confidence 98753
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=2.1e-25 Score=211.22 Aligned_cols=250 Identities=17% Similarity=0.257 Sum_probs=203.9
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCc-ceEEEEccCCCCCcEEEEeeCCCeEE
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIV 353 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~ 353 (531)
..+.+|..|+.+|.+++.+|+.++++||+.|..-.||++.++.....+..++. +.++.|+.+ +.+|++|..+|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd---gtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD---GTLLATGDMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC---ceEEEecCCCccEE
Confidence 45678999999999999999999999999999999999999998887754433 344445443 47999999999999
Q ss_pred EEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc
Q 009597 354 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 433 (531)
Q Consensus 354 iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~ 433 (531)
||...++.....+...-..|.-+.|+|.+..|+.|+.||.+.+|.+......+.+. +|..++++-.|.|+|+.++++..
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCceEEEEec
Confidence 99999999988887777888999999999999999999999999999875555554 59999999999999999999999
Q ss_pred CCeEEEEEcCCcceeceeeeec------------------CCc----------------------------ccc---ceE
Q 009597 434 DNQILIYSTRERFQLNKKKRFA------------------GHI----------------------------VAG---YAC 464 (531)
Q Consensus 434 Dg~I~iwd~~~~~~~~~~~~~~------------------~~~----------------------------~~~---~v~ 464 (531)
||+|++|+..++.++..+..-. +.. ... .|-
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 9999999999887664443100 000 000 011
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 465 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 465 ~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.+.++..-.+.|+|+-||+|.|||+...++.+.+. |...|+.+.|.+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeee
Confidence 12333344577899999999999998877766655 888999999987 56899999999999998
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.9e-25 Score=212.38 Aligned_cols=249 Identities=20% Similarity=0.341 Sum_probs=200.6
Q ss_pred cccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc-eEEEEccCCCCCcEEEEeeCC
Q 009597 271 TFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSD 349 (531)
Q Consensus 271 ~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d 349 (531)
....+.+..+. |..-|.+|... +++++||++||.++|||. .|+++.++..+..+ ..+.+...+.....|++++.|
T Consensus 93 ~~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D 168 (423)
T KOG0313|consen 93 ITAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD 168 (423)
T ss_pred cCCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCC
Confidence 33445555554 99999999887 678999999999999996 57777777554443 324444444444589999999
Q ss_pred CeEEEEECCCCce----eEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC------------------------
Q 009597 350 KKIVQWDMNTKEI----TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI------------------------ 401 (531)
Q Consensus 350 g~I~iwd~~t~~~----~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~------------------------ 401 (531)
.++++|-++.++. ++.-.+|...|-++...+++.+|++||.|.+|.||+...
T Consensus 169 qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~ 248 (423)
T KOG0313|consen 169 QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGG 248 (423)
T ss_pred ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccc
Confidence 9999999887653 333459999999999999999999999999999999321
Q ss_pred -CeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC
Q 009597 402 -PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 480 (531)
Q Consensus 402 -~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 480 (531)
..++. ...+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+. + ....+++..+|...+|++|+.
T Consensus 249 ~r~P~v-tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~---~---~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 249 TRTPLV-TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT---T---NKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred ccCceE-EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee---c---CcceeEeecccccceeeecCC
Confidence 11222 3346999999999998 6779999999999999999886553332 2 244778999999999999999
Q ss_pred CCcEEEEECCCC---eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 481 EGKCWFWDWKSC---KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 481 dg~I~iwd~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|..|++||.+++ -...++.+|...|.++.|+|.+...|++++.|+++++||
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 999999999865 345778899999999999998888999999999999998
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-26 Score=240.06 Aligned_cols=242 Identities=18% Similarity=0.328 Sum_probs=204.1
Q ss_pred HHHHHHHHhhhhccCCCCCCCceeeeeecccC------------------------------------------------
Q 009597 243 KYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHG------------------------------------------------ 274 (531)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------------------ 274 (531)
..+=+...+++++++|++++|+.|++|.+...
T Consensus 268 gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~ 347 (712)
T KOG0283|consen 268 GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC 347 (712)
T ss_pred CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence 33345567899999999999999999987660
Q ss_pred ------------eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcE
Q 009597 275 ------------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 342 (531)
Q Consensus 275 ------------~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (531)
++++.|+||.+.|.+|.||.++ +|+|+|.|++||||++...+|++.|.+...+.|+.|+|.++ ++
T Consensus 348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDD--ry 424 (712)
T KOG0283|consen 348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDD--RY 424 (712)
T ss_pred ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCC--Cc
Confidence 7788999999999999999875 79999999999999999999999999999999999999876 79
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeC-------CCCCC
Q 009597 343 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-------PHMHS 415 (531)
Q Consensus 343 l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-------~~~~~ 415 (531)
|++|+-||+|+||++...+++.-...+ .-|++++|.|+|+..+.|+.+|.+++|+....+....... .....
T Consensus 425 FiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~r 503 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKR 503 (712)
T ss_pred EeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCce
Confidence 999999999999999988877666655 8899999999999999999999999999987765443321 11237
Q ss_pred ccEEEEeCC-CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009597 416 MPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 416 v~~v~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 491 (531)
|+.+.|.|. ...+++.+.|..|+|||.++...+. .|+|......-....|+.||++|+++++|..|+||+...
T Consensus 504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~---KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH---KFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeeeEecCCCCCeEEEecCCCceEEEeccchhhhh---hhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 999999984 4458888999999999998765554 455554445555688999999999999999999999743
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8e-26 Score=221.41 Aligned_cols=255 Identities=20% Similarity=0.296 Sum_probs=212.9
Q ss_pred ceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC-CcceEEEEccCCCCCcE
Q 009597 264 EHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNI 342 (531)
Q Consensus 264 ~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 342 (531)
..+.+++..+...++++......|.+++|..||++|+.|...|.|+|+|+.+...++.+..+ .+...+.|++... .+
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~--t~ 125 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDN--TM 125 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCC--eE
Confidence 35667777777778888888999999999999999999999999999997765556666543 3445667777544 78
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCe-EEEEeeCCCCCCccEEE
Q 009597 343 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSIS 420 (531)
Q Consensus 343 l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~v~~v~ 420 (531)
|++|+.|+.+++||+.+......+.+|.+.|.|.+|+|.. ..++|||.||+|++||++... .+..+ .|..+|..+.
T Consensus 126 l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl 203 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVL 203 (487)
T ss_pred EEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEE
Confidence 9999999999999999998866899999999999999954 589999999999999999874 33333 4899999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 009597 421 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 500 (531)
Q Consensus 421 ~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 500 (531)
+-|.|..|++++ .+.|+|||+.++.++. ..+..|. ..|+|+++..++..|++|+-|+.|++||+.+.+.+..+.
T Consensus 204 ~lpsgs~iasAg-Gn~vkVWDl~~G~qll--~~~~~H~--KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~- 277 (487)
T KOG0310|consen 204 ALPSGSLIASAG-GNSVKVWDLTTGGQLL--TSMFNHN--KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK- 277 (487)
T ss_pred EcCCCCEEEEcC-CCeEEEEEecCCceeh--hhhhccc--ceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-
Confidence 999999888876 5789999998665442 2223353 459999999999999999999999999999999999987
Q ss_pred cCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 501 HEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 501 h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
..++|.+++.+| ++..++.|..||.+.+
T Consensus 278 ~~~pvLsiavs~-dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 278 YPGPVLSIAVSP-DDQTVVIGMSNGLVSI 305 (487)
T ss_pred cccceeeEEecC-CCceEEEecccceeee
Confidence 577899999999 7788999999998754
No 69
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.3e-26 Score=217.34 Aligned_cols=271 Identities=17% Similarity=0.269 Sum_probs=221.1
Q ss_pred HHHHHHhhhh-ccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEcc
Q 009597 245 AEEYAKKKEE-KGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 323 (531)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~ 323 (531)
+.+++..+.. ...++|+.||.|.+|+.....|+++|..|.+.|+.|++.. ..+++++.|++|+.|.++. ..++++.
T Consensus 69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~til 145 (433)
T KOG0268|consen 69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL 145 (433)
T ss_pred cchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeee
Confidence 3455555554 5678899999999999999999999999999999999987 5699999999999998765 4666665
Q ss_pred CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCC-EEEEEeCCCCEEEEEcCCC
Q 009597 324 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~Dg~I~iwd~~~~ 402 (531)
......-+..+.. .+.+++++ -.|.|||.....+++.+.-..+.|.++.|+|... .|++|..|+.|.+||+++.
T Consensus 146 g~s~~~gIdh~~~---~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 146 GKSVYLGIDHHRK---NSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred ccccccccccccc---cccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence 5444444444442 24566666 4699999999999999998889999999999554 5677779999999999999
Q ss_pred eEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC
Q 009597 403 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 482 (531)
Q Consensus 403 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 482 (531)
.+++.+.. ...-..|+|+|++-.|++++.|..++.||++.-. ..+..+.+|..+ +.+++|||.|+-+++|+.|.
T Consensus 221 ~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsA--V~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 221 SPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSA--VMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred Cccceeee--eccccceecCccccceeeccccccceehhhhhhc--ccchhhccccee--EEEeccCCCcchhccccccc
Confidence 88887753 4566789999999999999999999999998643 345677888654 99999999999999999999
Q ss_pred cEEEEECCCCeEEEEeec-cCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 483 KCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 483 ~I~iwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+|+||..+.+..-..+.. --..|.++.|+- +..++++||.|+.|++|
T Consensus 295 sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLW 342 (433)
T ss_pred eEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeee
Confidence 999999887654332211 113589999998 88999999999999999
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5e-25 Score=225.09 Aligned_cols=276 Identities=17% Similarity=0.251 Sum_probs=231.0
Q ss_pred HHHHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEc
Q 009597 243 KYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 322 (531)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~ 322 (531)
..+..++.+.+..+++ .+.++.+.+|+..+++|++++..- -+.+..|.|.++++++|...|.+.|+|+.+...+.++
T Consensus 374 ~dVRsl~vS~d~~~~~-Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti 450 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLA-SGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETI 450 (888)
T ss_pred hheeEEEeecCceeee-ecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhh
Confidence 3344444444444444 445678999999999999999754 8999999999999999999999999999999888887
Q ss_pred cCC-CcceEEEEccCCCCCcEEEEeeCCCeEEEEECCC-----CceeEEEc-------ccCCCeeEEEEecCCCEEEEEe
Q 009597 323 STG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEITQEYD-------QHLGAVNTITFVDSNRRFVTSS 389 (531)
Q Consensus 323 ~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t-----~~~~~~~~-------~h~~~I~~l~~sp~~~~l~s~s 389 (531)
..+ ...+.+...++. ..+++|+.|.+|++||..- +...+.+. .-...|.|+.++|++++|+++-
T Consensus 451 ~AHdgaIWsi~~~pD~---~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDN---KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hccccceeeeeecCCC---CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 643 334666666654 4599999999999999731 11111111 1346899999999999999999
Q ss_pred CCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEc
Q 009597 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 469 (531)
Q Consensus 390 ~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 469 (531)
-|.+|+||-+.+.+....+. +|.-+|.|+.++|+++.+++|+.|.+|+||-+.-+.+- +.+.+|. ..|.++.|-
T Consensus 528 LdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH---KS~fAHd--DSvm~V~F~ 601 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH---KSFFAHD--DSVMSVQFL 601 (888)
T ss_pred ccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccchhh---hhhhccc--CceeEEEEc
Confidence 99999999999987776665 49999999999999999999999999999999887554 5677775 448899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 470 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 470 pdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|...++.+++.|+.|+-||-...+.+..+.+|...|.+++.+| ++.+++++|.|.+|++|.
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeee
Confidence 9999999999999999999999999999999999999999999 889999999999999994
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.7e-25 Score=201.09 Aligned_cols=243 Identities=18% Similarity=0.287 Sum_probs=205.4
Q ss_pred EEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC-CCcceEEEEccCCCCCcEEEEeeCCCeEEEEE
Q 009597 278 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 356 (531)
Q Consensus 278 ~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd 356 (531)
+.+.+|.+.|.+|+|+.+|..|++|+.|+++++|+++.......... ++...+..+.+++....+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 77889999999999999999999999999999999988755544432 33334444455555668999999999999999
Q ss_pred CCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCe
Q 009597 357 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 436 (531)
Q Consensus 357 ~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~ 436 (531)
+++++++.......+.| -+.|+|+|.+++.++.|..|.+.|.++.+...... ....+.-++|+-++.+|+.....|+
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCce
Confidence 99999999887655544 58899999999999999999999999887665543 4567888999988888888888899
Q ss_pred EEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCC
Q 009597 437 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 516 (531)
Q Consensus 437 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 516 (531)
|.|.....- .++..+..|. ....||.|+|+|+|+|+|+.|..+-+||+...-+++.+.-+.-+|..+.|+. +++
T Consensus 171 v~ILsypsL---kpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~ 244 (313)
T KOG1407|consen 171 VEILSYPSL---KPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGR 244 (313)
T ss_pred EEEEecccc---ccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccc
Confidence 999988754 5556777786 4477799999999999999999999999999999999999999999999999 899
Q ss_pred EEEEEeCCCCEEe
Q 009597 517 KVATCGWDGLIKY 529 (531)
Q Consensus 517 ~l~t~s~Dg~I~i 529 (531)
+||++|.|..|-|
T Consensus 245 ~lASaSEDh~IDI 257 (313)
T KOG1407|consen 245 MLASASEDHFIDI 257 (313)
T ss_pred eeeccCccceEEe
Confidence 9999999988754
No 72
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=7.8e-24 Score=223.20 Aligned_cols=223 Identities=14% Similarity=0.166 Sum_probs=170.2
Q ss_pred EecCCeEEEEeCCCCcEEEEccCCC-cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc--------eeEEEcccCCC
Q 009597 302 ASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--------ITQEYDQHLGA 372 (531)
Q Consensus 302 ~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~--------~~~~~~~h~~~ 372 (531)
|+.++.|++|+......+..+..+. .+..+.|++. ..++|++|+.||+|++||+.++. ++..+.+|...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~--~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPC--FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 6678899999988777777775433 3445555553 34789999999999999997642 34567889999
Q ss_pred eeEEEEecCCCE-EEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceecee
Q 009597 373 VNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 451 (531)
Q Consensus 373 I~~l~~sp~~~~-l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 451 (531)
|.+++|+|++.. |++++.|++|+|||++++..+..+. +...|.+++|+|+|.+|++++.|+.|+|||++++..+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i--- 202 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA--- 202 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE---
Confidence 999999998876 5689999999999999987766553 5578999999999999999999999999999987655
Q ss_pred eeecCCccc---cceEEEEEcCCCCEEEEEeCCC----cEEEEECCC-CeEEEEeeccCC-cEEEEEEecCCCCEEEEEe
Q 009597 452 KRFAGHIVA---GYACQVNFSPDGRFVMSGDGEG----KCWFWDWKS-CKVFRTLKCHEG-VCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 452 ~~~~~~~~~---~~v~~l~~spdg~~l~sgs~dg----~I~iwd~~~-~~~~~~~~~h~~-~V~~v~~~p~~~~~l~t~s 522 (531)
..+.+|... ..+....|++++.+|++++.++ .|+|||++. .+++..+..+.. .+....|.+..+.++++|+
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 345556432 1223345678999999987664 799999995 566665543322 2223345565788899999
Q ss_pred CCCCEEeeC
Q 009597 523 WDGLIKYWD 531 (531)
Q Consensus 523 ~Dg~I~iWD 531 (531)
.|+.|++||
T Consensus 283 GD~tIr~~e 291 (568)
T PTZ00420 283 GDGNCRYYQ 291 (568)
T ss_pred CCCeEEEEE
Confidence 999999996
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.7e-24 Score=198.76 Aligned_cols=274 Identities=16% Similarity=0.297 Sum_probs=221.3
Q ss_pred HHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEec--CCeEEEEeCCCCcEEEEcc
Q 009597 246 EEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQVIRTFS 323 (531)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~--Dg~I~vWd~~t~~~i~~~~ 323 (531)
.++..+.++..+.+...+..+.+++...+++++++..++-.|..++|....+.++.++. |.+|+..++.+.+.++.|.
T Consensus 18 ~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~ 97 (311)
T KOG1446|consen 18 NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP 97 (311)
T ss_pred eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC
Confidence 34556677777888888899999999999999999999999999999887777777776 8899999999999999996
Q ss_pred CCCc-ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 009597 324 TGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 324 ~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~ 402 (531)
.++. +..++.+|-+ ..+++++.|++|++||++..++...+.. ..-..++|.|+|-+||++.....|++||++.-
T Consensus 98 GH~~~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred CCCceEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 5443 3445555543 6799999999999999998887766643 33346899999999999998889999999863
Q ss_pred ----eEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCcccc-ceEEEEEcCCCCEEEE
Q 009597 403 ----VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG-YACQVNFSPDGRFVMS 477 (531)
Q Consensus 403 ----~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s 477 (531)
.....+..+.....+.+.|+|+|++|+.++..+.+.+.|.-++..+. .+.++.... .....+|+||++++++
T Consensus 173 dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~---tfs~~~~~~~~~~~a~ftPds~Fvl~ 249 (311)
T KOG1446|consen 173 DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS---TFSGYPNAGNLPLSATFTPDSKFVLS 249 (311)
T ss_pred CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee---eEeeccCCCCcceeEEECCCCcEEEE
Confidence 22223333456788999999999999999999999999998886543 444443333 2345789999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeec-cCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 478 GDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 478 gs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
|+.||+|.+|+++++..+..+.+ +.+++.++.|+| .-..++|+ +..+-+|
T Consensus 250 gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf~sa--~s~l~fw 300 (311)
T KOG1446|consen 250 GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMFVSA--SSNLVFW 300 (311)
T ss_pred ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeeeeec--CceEEEE
Confidence 99999999999999999999998 788999999999 44455554 5567777
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.3e-25 Score=199.88 Aligned_cols=235 Identities=16% Similarity=0.287 Sum_probs=192.2
Q ss_pred EEEEEcc--CCCEEEEEe-------cCCeEEEEeCCCCcE---EEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEE
Q 009597 288 RDISFCN--DGTKFLTAS-------YDKNIKYWDTETGQV---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 355 (531)
Q Consensus 288 ~~l~fsp--dg~~l~s~s-------~Dg~I~vWd~~t~~~---i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iw 355 (531)
.++.||| .++ |+.+. ..|++.|.++...+- ...+........++++... .+.+++++.||++++|
T Consensus 12 ysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~--e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 12 YSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH--ENQVIAASGDGSLRLF 88 (311)
T ss_pred ceeEecccccch-hheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC--cceEEEEecCceEEEe
Confidence 5788998 343 44332 268999999864443 3444555555666666654 4789999999999999
Q ss_pred ECCC-CceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC-CCCEEEEEE
Q 009597 356 DMNT-KEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQS 432 (531)
Q Consensus 356 d~~t-~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~s 432 (531)
|+.. ..+++.++.|...|.++.|++ .++.++++|.|++|++|+...+..+..+.. |...|....|+| .++++++++
T Consensus 89 d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 89 DLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred ccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC-CccEEEEEecCCCCCCeEEEcc
Confidence 9743 458889999999999999998 455688899999999999999988888754 999999999999 689999999
Q ss_pred cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-eEEEEeeccCCcEEEEEE
Q 009597 433 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEW 510 (531)
Q Consensus 433 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~v~~ 510 (531)
.|+++++||++.... ...+..|. ..+.++.|+. +...|++|+.|+.|++||++.. .++..+.+|.-.|..+.|
T Consensus 168 gd~~l~lwdvr~~gk---~~~i~ah~--~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGK---FMSIEAHN--SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF 242 (311)
T ss_pred CCceEEEEEecCCCc---eeEEEecc--ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec
Confidence 999999999987522 23366664 4588899987 5678899999999999999974 467888999999999999
Q ss_pred ecCCCCEEEEEeCCCCEEeeC
Q 009597 511 HPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 511 ~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+|....+|++|+.|-++||||
T Consensus 243 Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred CcchhhHhhhccccceEEecc
Confidence 998889999999999999997
No 75
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.3e-23 Score=220.33 Aligned_cols=243 Identities=12% Similarity=0.203 Sum_probs=182.6
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEcc------------CCCcceEEEEccCCCCCcEEEEeeCCC
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS------------TGKIPYVVKLNPDDDKQNILLAGMSDK 350 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~------------~~~~~~~~~~~~~~~~~~~l~sg~~dg 350 (531)
|-..|+....++++..+++++.+.....|+...+..+..+. .++...+..+.+.+..+++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 34556677777787778888888888889876554332111 123333434443332346899999999
Q ss_pred eEEEEECCCC-------ceeEEEcccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEe
Q 009597 351 KIVQWDMNTK-------EITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 422 (531)
Q Consensus 351 ~I~iwd~~t~-------~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~s 422 (531)
+|++||+.++ ..+..+.+|...|.+++|+|++ ++|++++.|++|+|||+.++..+..+. .|...|.+++|+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~s 177 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEWN 177 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEEE
Confidence 9999999765 3567889999999999999975 689999999999999999988776664 488899999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCe-EEEE
Q 009597 423 PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD----GEGKCWFWDWKSCK-VFRT 497 (531)
Q Consensus 423 p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs----~dg~I~iwd~~~~~-~~~~ 497 (531)
|++.+|++++.|++|+|||++++..+ ..+.+|.. .....+.|.+++..|++++ .|+.|++||+++.. ++..
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v---~tl~~H~~-~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIV---SSVEAHAS-AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEE---EEEecCCC-CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 99999999999999999999987654 34455542 2234577899888777654 47899999998754 4444
Q ss_pred eeccC-CcEEEEEEecCCCCEEEEEe-CCCCEEeeC
Q 009597 498 LKCHE-GVCIGCEWHPLEQSKVATCG-WDGLIKYWD 531 (531)
Q Consensus 498 ~~~h~-~~V~~v~~~p~~~~~l~t~s-~Dg~I~iWD 531 (531)
...+. ..+....|++ ++.+|+++| .||.|++||
T Consensus 254 ~~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 254 VDLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred eccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEE
Confidence 44333 3455667888 777888877 599999997
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.7e-24 Score=206.70 Aligned_cols=265 Identities=17% Similarity=0.251 Sum_probs=219.5
Q ss_pred CCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC-CcceEEEEcc
Q 009597 257 NAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNP 335 (531)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~ 335 (531)
..+|+.+..+.+.+....+.+.+|+||...|+++.|+|+...+++++.|..|+||......+......+ ..+..+..++
T Consensus 234 ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~ 313 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP 313 (506)
T ss_pred ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc
Confidence 456777777888888889999999999999999999999999999999999999998766654444333 3345556666
Q ss_pred CCCCCcEEEEeeCCCeEEEEECCCCceeEEEccc--CCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC
Q 009597 336 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH--LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 413 (531)
Q Consensus 336 ~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h--~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 413 (531)
. +.+|++++.||+..+.|++++..+...... .-.+++.+|+|||..|.+|..|+.|+|||+..+.....+.. |.
T Consensus 314 t---geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht 389 (506)
T KOG0289|consen 314 T---GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HT 389 (506)
T ss_pred C---CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC-CC
Confidence 4 468999999999999999999887766532 23589999999999999999999999999999987777754 99
Q ss_pred CCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC--CC
Q 009597 414 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW--KS 491 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~--~~ 491 (531)
.+|..++|+.+|-||++++.|+.|++||+|..... +.+.-... ..+..+.|.+.|.+|++++.+=.|++++- ++
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~---kt~~l~~~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF---KTIQLDEK-KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhccc---ceeecccc-ccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 99999999999999999999999999999976433 33332221 24778999999999999988777777763 36
Q ss_pred CeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 492 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 492 ~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+.++..+..|.+..+++.|.. ...+++++|.|..++++
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLY 503 (506)
T ss_pred ceeeehhhhcccccceeeecc-cceEEeeccchhheEEe
Confidence 778888888998888999987 77899999999998875
No 77
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=200.69 Aligned_cols=252 Identities=21% Similarity=0.334 Sum_probs=190.9
Q ss_pred CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc-----EEEE-ccCCCcceEEEEccC-----------
Q 009597 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----VIRT-FSTGKIPYVVKLNPD----------- 336 (531)
Q Consensus 274 ~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-----~i~~-~~~~~~~~~~~~~~~----------- 336 (531)
.-.+..|+||.+.|++++|+.||++|+|++.|++|+||++.... +++. +... .+..+.|.++
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEccC
Confidence 33457899999999999999999999999999999999986421 1110 0000 1111111111
Q ss_pred -----------------------------------------CCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeE
Q 009597 337 -----------------------------------------DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 375 (531)
Q Consensus 337 -----------------------------------------~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~ 375 (531)
.++..+|++++.|..|.+|+++ |+.++.+......-..
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 1234679999999999999999 9999999888888888
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEcC---CC--eEEE--EeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCccee
Q 009597 376 ITFVDSNRRFVTSSDDKSLRVWEFG---IP--VVIK--YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 448 (531)
Q Consensus 376 l~~sp~~~~l~s~s~Dg~I~iwd~~---~~--~~~~--~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~ 448 (531)
.+.+|+|+++++++.---|++|.+- .+ +.+. ....+|...|..++|+++...+++.+.||+++|||+.-....
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 9999999999999999999999862 22 1111 112469999999999999999999999999999998643221
Q ss_pred ----ceeee--ecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-ccCCcEEEEEEecCCCCEEEEE
Q 009597 449 ----NKKKR--FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATC 521 (531)
Q Consensus 449 ----~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~l~t~ 521 (531)
..++. ...|...+..+.+.++|+|+.|+.+.. ..|.++..++++.+..+. .|...|.+++|++ ++.+++||
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atc 391 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATC 391 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeee
Confidence 11121 223444556778999999999987764 479999999998888775 7999999999999 88999999
Q ss_pred eCCCCEEee
Q 009597 522 GWDGLIKYW 530 (531)
Q Consensus 522 s~Dg~I~iW 530 (531)
| |..+++.
T Consensus 392 G-dr~vrv~ 399 (420)
T KOG2096|consen 392 G-DRYVRVI 399 (420)
T ss_pred c-ceeeeee
Confidence 8 6666653
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.6e-25 Score=210.07 Aligned_cols=251 Identities=18% Similarity=0.288 Sum_probs=202.4
Q ss_pred cccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcE---EEEccCC-CcceEEEEccCCCCCcEEEEe
Q 009597 271 TFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFSTG-KIPYVVKLNPDDDKQNILLAG 346 (531)
Q Consensus 271 ~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~---i~~~~~~-~~~~~~~~~~~~~~~~~l~sg 346 (531)
..+.+....+..|+..|.-+.||++|++|||++.|.+..||.+..... ..++..+ ..+.-+.|+|++ +++++|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd---ryLlaC 287 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD---RYLLAC 287 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC---CeEEec
Confidence 344566678889999999999999999999999999999998754433 4444332 233445555543 678888
Q ss_pred eCCCeEEEEECCCCceeEEEcc-cCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCC
Q 009597 347 MSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT 425 (531)
Q Consensus 347 ~~dg~I~iwd~~t~~~~~~~~~-h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~ 425 (531)
+.+..+.+||..+|+....+.. |...+.+++|.|||..|++|+.|+++..||+.... ...........|.++++.++|
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCC
Confidence 8899999999999999888853 46789999999999999999999999999997653 222222344568999999999
Q ss_pred CEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCC--
Q 009597 426 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG-- 503 (531)
Q Consensus 426 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-- 503 (531)
+++++.+.|..|++|+..+...... ... ...++++++|.+++++++.-.+..|++||+...+.+..+.+|..
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~l---ise---~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGL---ISE---EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH 440 (519)
T ss_pred cEEEEEecccceeeechhhhhhhcc---ccc---cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence 9999999999999999877544321 111 24488899999999999999999999999999999999999975
Q ss_pred cEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 504 VCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 504 ~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
-+..-+|--.+..++++||.|+.|+||+
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEE
Confidence 4566677765668999999999999996
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-23 Score=184.81 Aligned_cols=281 Identities=18% Similarity=0.246 Sum_probs=215.1
Q ss_pred HHHHHHHHhhhhccCCCCCCCceeeeeecc------c---------CeeeEEecCccCceEEEEEccCCCEEEEEecCCe
Q 009597 243 KYAEEYAKKKEEKGNAGGEKGEHVEDKSTF------H---------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 307 (531)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~---------~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~ 307 (531)
..++.++.-+.+.+.+.|+...++++-... + .-..+.-+.|++.|.|.+|+|+|.+|++|+.|++
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 345667777888887777777666553211 1 1223344679999999999999999999999999
Q ss_pred EEEEeCCCCcEEE-----Ecc-CCCcceEEEEccCCC-CCcEEEEe-eCCCeEEEEECCCCceeEEEcccCCCeeEEEEe
Q 009597 308 IKYWDTETGQVIR-----TFS-TGKIPYVVKLNPDDD-KQNILLAG-MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 379 (531)
Q Consensus 308 I~vWd~~t~~~i~-----~~~-~~~~~~~~~~~~~~~-~~~~l~sg-~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~s 379 (531)
|++..+....+-. .|. +......++|...+. ++.+|+++ ..|..|++-|..+++..+.+.+|.+.|.++- +
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-s 191 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-S 191 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-E
Confidence 9998765433321 122 233445566654443 33455554 4578899999999999999999999998762 3
Q ss_pred cCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC------CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeee
Q 009597 380 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 453 (531)
Q Consensus 380 p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~------~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 453 (531)
-++-.|++|+.|.+|++||++.+.++..+... ....|.+++..|.|++|++|-.|....+||++.+..+ +.
T Consensus 192 wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i---q~ 268 (350)
T KOG0641|consen 192 WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI---QR 268 (350)
T ss_pred ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee---ee
Confidence 36889999999999999999999888776431 2356899999999999999999999999999998655 55
Q ss_pred ecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 454 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 454 ~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
|..|. ..|.++.|||...||++++.|..|++-|+... -.+.....|...+..+.|+|+ .--+++.+.|.++.+
T Consensus 269 f~phs--adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~-d~sfisssadkt~tl 345 (350)
T KOG0641|consen 269 FHPHS--ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ-DFSFISSSADKTATL 345 (350)
T ss_pred eCCCc--cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc-cceeeeccCcceEEE
Confidence 66664 55999999999999999999999999998631 223344568889999999994 456778889999999
Q ss_pred e
Q 009597 530 W 530 (531)
Q Consensus 530 W 530 (531)
|
T Consensus 346 w 346 (350)
T KOG0641|consen 346 W 346 (350)
T ss_pred e
Confidence 9
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.7e-24 Score=209.29 Aligned_cols=274 Identities=17% Similarity=0.274 Sum_probs=216.9
Q ss_pred HHHHhhhhccCCCCCCCceeeeeecccCeee-----------------EEe-cCccCceEEEEEccCCCEEEEEecCCeE
Q 009597 247 EYAKKKEEKGNAGGEKGEHVEDKSTFHGKCM-----------------RTY-MGHSKAVRDISFCNDGTKFLTASYDKNI 308 (531)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------------~~l-~gH~~~V~~l~fspdg~~l~s~s~Dg~I 308 (531)
++...++.+....++++++|..|.+.+++.. ..- ++|.+.|.+++.++||++|++|+.|..|
T Consensus 147 ~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v 226 (479)
T KOG0299|consen 147 SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHV 226 (479)
T ss_pred EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceE
Confidence 3445566666677788888888888777633 111 3899999999999999999999999999
Q ss_pred EEEeCCCCcEEEEccCCCc-ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEE
Q 009597 309 KYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 387 (531)
Q Consensus 309 ~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s 387 (531)
.||+.++.+.++.+..+.. +..++|... .+-+++++.|+.|++|++.....+.++.+|++.|..|....-++.+-+
T Consensus 227 ~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV 303 (479)
T KOG0299|consen 227 QIWDCDTLEHVKVFKGHRGAVSSLAFRKG---TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV 303 (479)
T ss_pred EEecCcccchhhcccccccceeeeeeecC---ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEe
Confidence 9999999999999865443 333444432 256999999999999999999999999999999999999988887778
Q ss_pred EeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccc-------
Q 009597 388 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA------- 460 (531)
Q Consensus 388 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~------- 460 (531)
|+.|+++++|++ +...+.+..++...+-|++|- +...|++|+.+|.|.+|++...+++...+.-.+-...
T Consensus 304 GgrDrT~rlwKi--~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~ 380 (479)
T KOG0299|consen 304 GGRDRTVRLWKI--PEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGN 380 (479)
T ss_pred ccccceeEEEec--cccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccc
Confidence 889999999999 444455556688899999998 5567999999999999999887766544433222211
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCE
Q 009597 461 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 527 (531)
Q Consensus 461 ~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I 527 (531)
.+|++++..|...++++|+.+|.|++|-+..+ .++..+. -.+.|++++|++++..+++.+|....+
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred cceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccc
Confidence 38999999999999999999999999988766 4555555 567899999999554466666654443
No 81
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.2e-24 Score=209.95 Aligned_cols=245 Identities=19% Similarity=0.335 Sum_probs=195.7
Q ss_pred cCccCceEEEEEccC-CCEEEEEecCCeEEEEeCCCCcEEE----------EccCCCc-ceEEEEccCCCCCcEEEEeeC
Q 009597 281 MGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIR----------TFSTGKI-PYVVKLNPDDDKQNILLAGMS 348 (531)
Q Consensus 281 ~gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~i~----------~~~~~~~-~~~~~~~~~~~~~~~l~sg~~ 348 (531)
--|.+.|..+.+.|. ...+++.+..+.|.|||..+..-.. ++..+.. .+.++|++. ....+++|+.
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~--~~g~Lls~~~ 198 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ--QEGTLLSGSD 198 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc--cceeEeeccC
Confidence 349999999999995 4567778889999999986432111 2323333 455555554 4468999999
Q ss_pred CCeEEEEECCCCc-------eeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCC-CeEEEEeeCCCCCCccEE
Q 009597 349 DKKIVQWDMNTKE-------ITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSI 419 (531)
Q Consensus 349 dg~I~iwd~~t~~-------~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~v~~v 419 (531)
|+.|++||+.... ....+.+|...|..++|++ +...|+++++|+.+.|||+|+ ..........|...|.|+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 9999999996432 4567899999999999999 556799999999999999996 223333445699999999
Q ss_pred EEeC-CCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-----
Q 009597 420 SLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSC----- 492 (531)
Q Consensus 420 ~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~iwd~~~~----- 492 (531)
+|+| ++.+||+|+.|++|.+||+|+-.. ++..+.+|. ..|.++.|||. ...|++++.|+.+.|||+..-
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~--dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHE--DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCC--cceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 9999 678899999999999999998543 567788885 55999999996 567888999999999998631
Q ss_pred ---------eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 493 ---------KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 493 ---------~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+++..-.+|...|..+.|+|...-.|+|.+.|+.+.||.
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 234556689999999999998888999999999999995
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=6.6e-25 Score=204.46 Aligned_cols=240 Identities=18% Similarity=0.321 Sum_probs=202.8
Q ss_pred CccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC---------CCcceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST---------GKIPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 282 gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~---------~~~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
|.++-+.|..|+|||++|++|+.||.|.+|+..+|+..+.+.- ...+.|+.|+.+. .++++|+.||.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs---EMlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS---EMLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH---HHhhccCcCCcE
Confidence 4566789999999999999999999999999999987665542 2334555555543 589999999999
Q ss_pred EEEECCCCceeEEEc-ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEE
Q 009597 353 VQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 431 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 431 (531)
++|.+++|.+++.|. .|...|+|+.|+.++..+++++.|.+++|.-++++++++.+.. |...|+.+.|.++|..++++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG-HsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG-HSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC-ccccccceEEcCCCCeEEEe
Confidence 999999999999996 8999999999999999999999999999999999999988864 99999999999999999999
Q ss_pred EcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeec---cCCcEEE
Q 009597 432 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIG 507 (531)
Q Consensus 432 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~ 507 (531)
+.||+|++|+..+..++...+... ....|+.+..-| +-..++++....+|+|.++ .|+.++++.. ..+...+
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~---~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLG---TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFIN 442 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCC---CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEE
Confidence 999999999999988876555443 334566666666 4567888989999999986 4677777752 3456778
Q ss_pred EEEecCCCCEEEEEeCCCCEEee
Q 009597 508 CEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 508 v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
++.+| .+.++.+.+.|+.++.|
T Consensus 443 ~~lSp-kGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 443 AILSP-KGEWIYCIGEDGVLYCF 464 (508)
T ss_pred EEecC-CCcEEEEEccCcEEEEE
Confidence 88999 88899999999988765
No 83
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.8e-24 Score=196.15 Aligned_cols=240 Identities=20% Similarity=0.296 Sum_probs=187.5
Q ss_pred CccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCC-CcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCC
Q 009597 282 GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 359 (531)
Q Consensus 282 gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t 359 (531)
.-...|.+|+||| ...+|+.+|.|++||+|+++. |..+..-...+...+++..+..+. ..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccC
Confidence 3567899999999 556677999999999999976 555554444444455555554433 6799999999999999999
Q ss_pred CceeEEEcccCCCeeEEEEecCCC--EEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeE
Q 009597 360 KEITQEYDQHLGAVNTITFVDSNR--RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 437 (531)
Q Consensus 360 ~~~~~~~~~h~~~I~~l~~sp~~~--~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I 437 (531)
++ +..+..|.++|.++.|.+... .|+|||.|++|+.||.+...++..+.. ...+.++.. ....++++..+..|
T Consensus 104 ~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--PeRvYa~Dv--~~pm~vVata~r~i 178 (347)
T KOG0647|consen 104 GQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--PERVYAADV--LYPMAVVATAERHI 178 (347)
T ss_pred CC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--cceeeehhc--cCceeEEEecCCcE
Confidence 94 567778999999999998666 799999999999999999988887764 344555443 35678889999999
Q ss_pred EEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEeeccCC---------cEE
Q 009597 438 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--KVFRTLKCHEG---------VCI 506 (531)
Q Consensus 438 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~---------~V~ 506 (531)
.+|++++..... +..... ..-.+.||+..++....+.|+-+|.+-|..+..+ +.-.+|++|.. .|.
T Consensus 179 ~vynL~n~~te~--k~~~Sp-Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 179 AVYNLENPPTEF--KRIESP-LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred EEEEcCCCcchh--hhhcCc-ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 999998753321 222221 2344778888888888899999999999988876 55566778863 578
Q ss_pred EEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 507 GCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 507 ~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+++||| ....|+|+|.||++.+||
T Consensus 256 si~FhP-~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 256 SIAFHP-VHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred ceEeec-ccceEEEecCCceEEEec
Confidence 899999 666899999999999998
No 84
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.9e-24 Score=207.44 Aligned_cols=244 Identities=23% Similarity=0.399 Sum_probs=203.8
Q ss_pred eEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEE-EccC----------------CCcceEEEEccCCCC
Q 009597 277 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFST----------------GKIPYVVKLNPDDDK 339 (531)
Q Consensus 277 ~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~-~~~~----------------~~~~~~~~~~~~~~~ 339 (531)
++.+..|.-+|.+|+++|++++.++++.|++|.-|++.++.... .+.. .+...++++...+ .
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-D 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-C
Confidence 67888999999999999999999999999999999999887441 1111 2223344444333 3
Q ss_pred CcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEE
Q 009597 340 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 419 (531)
Q Consensus 340 ~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v 419 (531)
+.+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|++|++|++.....+..+.. |...|..+
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG-Hqd~v~~I 292 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG-HQDGVLGI 292 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC-Cccceeee
Confidence 47999999999999999999999999999999999999999889999999999999999988777766654 88999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q 009597 420 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 499 (531)
Q Consensus 420 ~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 499 (531)
....-++.+.+|+.|+++++|++....++ .|.++ .+.+-|++|-.+ ..+++|+.+|.|.+|++...+++.+..
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~eesql----ifrg~--~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEESQL----IFRGG--EGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred chhcccceEEeccccceeEEEecccccee----eeeCC--CCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEee
Confidence 88888888889999999999999664333 45666 456778888755 467799999999999999998887765
Q ss_pred -ccC-----------CcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 500 -CHE-----------GVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 500 -~h~-----------~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+|. ..|++++..| +..++++|+++|+|++|
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLW 407 (479)
T ss_pred ccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEE
Confidence 342 1689999999 99999999999999999
No 85
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-23 Score=188.86 Aligned_cols=197 Identities=19% Similarity=0.309 Sum_probs=169.7
Q ss_pred ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCC---ceeEEE-cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC-
Q 009597 328 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEY-DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP- 402 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~---~~~~~~-~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~- 402 (531)
...+++++- .+.+|++|+.|+.|++|+...+ .+...+ .+|...|.+++|+|.|++|+++|.|.++.||.-..+
T Consensus 17 ~W~~awhp~--~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 17 VWSVAWHPG--KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred EEEEEeccC--CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 455555553 3579999999999999999853 334334 569999999999999999999999999999986644
Q ss_pred -eEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC
Q 009597 403 -VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 481 (531)
Q Consensus 403 -~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 481 (531)
+++..+ ++|...|.|++|+++|++||+++.|..|-||.+...........+.+|... |..+.|+|...+|++++.|
T Consensus 95 fecv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD--VK~V~WHPt~dlL~S~SYD 171 (312)
T KOG0645|consen 95 FECVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD--VKHVIWHPTEDLLFSCSYD 171 (312)
T ss_pred eeEEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc--ccEEEEcCCcceeEEeccC
Confidence 444444 569999999999999999999999999999999877777777888888655 7789999999999999999
Q ss_pred CcEEEEECC---CCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 482 GKCWFWDWK---SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 482 g~I~iwd~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.+|++|.-. ...++.++.+|...|.+++|++ .+..|++|+.|++|+||
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIW 222 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEee
Confidence 999999765 4678999999999999999999 77899999999999999
No 86
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3e-24 Score=199.65 Aligned_cols=270 Identities=20% Similarity=0.333 Sum_probs=214.8
Q ss_pred hccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeC------CC--------Cc--
Q 009597 254 EKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT------ET--------GQ-- 317 (531)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~------~t--------~~-- 317 (531)
..+..+++.+-+..+|+..+++|+.+|.||.+.|.+|.|++.+.++++++.|++-.||.. .. ++
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 345667788889999999999999999999999999999999999999999999999962 11 00
Q ss_pred ------------------------EEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCe
Q 009597 318 ------------------------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 373 (531)
Q Consensus 318 ------------------------~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I 373 (531)
++..+. ++...+++..+.. .+..+++++.|.+..+||+++++++..+.+|....
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL 317 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL 317 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeee-ccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence 111121 2223333333332 34679999999999999999999999999999999
Q ss_pred eEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeee
Q 009597 374 NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 453 (531)
Q Consensus 374 ~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 453 (531)
+.++-+|..+++++++.|.+.++||++.......+..+|...|+++.|..+. .+++|+.|.+|+|||+++.... +.+
T Consensus 318 tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp--lAT 394 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP--LAT 394 (481)
T ss_pred cccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc--cee
Confidence 9999999999999999999999999996655555667899999999999654 5899999999999999875432 122
Q ss_pred ecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE----EeeccCCcEEEEEEecCC-CCEEEEEeCCCCEE
Q 009597 454 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR----TLKCHEGVCIGCEWHPLE-QSKVATCGWDGLIK 528 (531)
Q Consensus 454 ~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~----~~~~h~~~V~~v~~~p~~-~~~l~t~s~Dg~I~ 528 (531)
+. ....++.++.+..+..|+.-..+..|++||+...++-+ .-++|...|.|++|.... -.-|++||.|..+.
T Consensus 395 IR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 395 IR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred ee---cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 22 13457779999989999999999999999987654432 335899999999998521 13589999999988
Q ss_pred eeC
Q 009597 529 YWD 531 (531)
Q Consensus 529 iWD 531 (531)
-|.
T Consensus 472 gW~ 474 (481)
T KOG0300|consen 472 GWK 474 (481)
T ss_pred eeE
Confidence 884
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.6e-23 Score=222.91 Aligned_cols=274 Identities=19% Similarity=0.298 Sum_probs=214.9
Q ss_pred HHhhhhccCCCCC--CCceeeeeeccc------------CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCC
Q 009597 249 AKKKEEKGNAGGE--KGEHVEDKSTFH------------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 314 (531)
Q Consensus 249 ~~~~~~~~~~~~~--~~~~i~~~~~~~------------~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 314 (531)
...+++...++|+ .++.+.+|+... .+.+.+...|.+.|.|+.|+|||++||+||.|+.|.||...
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERA 99 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeec
Confidence 3456666777776 555555776432 35677888999999999999999999999999999999876
Q ss_pred C------------------CcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEE
Q 009597 315 T------------------GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI 376 (531)
Q Consensus 315 t------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l 376 (531)
. .+++..+.. |...+..+.+.+ ...+|++++.|++|.||+..+.+.+..+.+|.+.|..+
T Consensus 100 ~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 100 EIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGV 177 (942)
T ss_pred ccCCcccccccccccccceeeEEEEEec-CCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccce
Confidence 2 123444433 444444455544 34799999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC-----CCccEEEEeCCCCEEEEEEc----CCeEEEEEcCCcce
Q 009597 377 TFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-----HSMPSISLHPNTNWLAAQSL----DNQILIYSTRERFQ 447 (531)
Q Consensus 377 ~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-----~~v~~v~~sp~~~~l~s~s~----Dg~I~iwd~~~~~~ 447 (531)
.|.|-|++|++-++|++|+||.+......+.+..+.. ..+..+.|+|+|++|++... -.++.|.+-.+.
T Consensus 178 s~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW-- 255 (942)
T KOG0973|consen 178 SWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW-- 255 (942)
T ss_pred EECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCc--
Confidence 9999999999999999999999888777777665433 34678999999999998643 236777776543
Q ss_pred eceeeeecCCccccceEEEEEcCC-----CC------------EEEEEeCCCcEEEEECCCCeEEEEee-ccCCcEEEEE
Q 009597 448 LNKKKRFAGHIVAGYACQVNFSPD-----GR------------FVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCE 509 (531)
Q Consensus 448 ~~~~~~~~~~~~~~~v~~l~~spd-----g~------------~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~v~ 509 (531)
..-..+-||.. .+.++.|+|. .. .+|+|+.|++|-||.....+++..+. .....|..++
T Consensus 256 -k~~~~LvGH~~--p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dms 332 (942)
T KOG0973|consen 256 -KVDKDLVGHSA--PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMS 332 (942)
T ss_pred -eeeeeeecCCC--ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeee
Confidence 23356788864 5888999981 11 67899999999999998888776554 3456899999
Q ss_pred EecCCCCEEEEEeCCCCEEee
Q 009597 510 WHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 510 ~~p~~~~~l~t~s~Dg~I~iW 530 (531)
|+| ++..|+.||.||+|.+.
T Consensus 333 Wsp-dG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 333 WSP-DGFSLFACSLDGTVALI 352 (942)
T ss_pred EcC-CCCeEEEEecCCeEEEE
Confidence 999 88889999999999875
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=220.88 Aligned_cols=236 Identities=22% Similarity=0.377 Sum_probs=201.5
Q ss_pred eEEecC-ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE-ccCCCc-ceEEEEccCCCCCcEEEEeeCCCeEE
Q 009597 277 MRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIV 353 (531)
Q Consensus 277 ~~~l~g-H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~-~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~ 353 (531)
...+.+ |...|.+..|. ..++++++.|++|++||..++..+.. +..+.. ++.+.+.. .+.++++|+.|.+++
T Consensus 200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~---~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS---GGDKLVSGSTDKTER 274 (537)
T ss_pred ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec---CCCEEEEEecCCcEE
Confidence 344444 67789999998 45799999999999999999999988 643332 33444433 347899999999999
Q ss_pred EEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc
Q 009597 354 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 433 (531)
Q Consensus 354 iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~ 433 (531)
+||+.+++++..+.+|...|.++... ...+++|+.|.+|++|++.++..+..+.. |..+|.++.++ +.++++|+.
T Consensus 275 vWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~~lvsgs~ 349 (537)
T KOG0274|consen 275 VWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EPLLVSGSY 349 (537)
T ss_pred eEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CCEEEEEec
Confidence 99999999999999999999999874 45788899999999999999999988876 99999999997 889999999
Q ss_pred CCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeeccCCcEEEEEEec
Q 009597 434 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 434 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~v~~~p 512 (531)
|++|.+||+....++ ..+.+|. ..|.++.+... ..+++|+.|+.|++||+.+. +++.++.+|...+..+.+.
T Consensus 350 d~~v~VW~~~~~~cl---~sl~gH~--~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~- 422 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCL---KSLSGHT--GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR- 422 (537)
T ss_pred CceEEEEEhhhceee---eeecCCc--ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-
Confidence 999999999976544 6778885 55888877765 89999999999999999999 9999999999998777764
Q ss_pred CCCCEEEEEeCCCCEEeeC
Q 009597 513 LEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 513 ~~~~~l~t~s~Dg~I~iWD 531 (531)
..+|++++.||+|++||
T Consensus 423 --~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 423 --DNFLVSSSADGTIKLWD 439 (537)
T ss_pred --cceeEeccccccEEEee
Confidence 47899999999999997
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.9e-24 Score=207.47 Aligned_cols=232 Identities=21% Similarity=0.309 Sum_probs=193.2
Q ss_pred HHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccC-CCEEEEEecCCeEEEEeCCCCcEEEEccCCCc
Q 009597 249 AKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFSTGKI 327 (531)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~ 327 (531)
....++++++.|++.|++.+++..+...++.+.+|..+|..+.|+|. +..|++|+.|+.+++||+.+......+ .++.
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-~~ht 153 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-SGHT 153 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-cCCc
Confidence 35567899999999999999997666678999999999999999994 667889999999999999998874444 4555
Q ss_pred ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCC-ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 009597 328 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 406 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 406 (531)
.++-+..+.+...+++++|+.||+|++||+++. ..+.++. |..+|..+.+.|.|.+|++++.. .|+|||+-++....
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLL 231 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceeh
Confidence 555555555556689999999999999999987 6666776 88999999999999999998854 69999999765555
Q ss_pred EeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 009597 407 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 486 (531)
Q Consensus 407 ~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~i 486 (531)
.....|...|+|+++..++..|++++.|+.|++||+.+.+.+.. -...+.|.+++.+|+++.++.|..+|.+.+
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s------~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS------WKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEe------eecccceeeEEecCCCceEEEecccceeee
Confidence 54445999999999999999999999999999999766543322 223466888999999999999999999887
Q ss_pred EEC
Q 009597 487 WDW 489 (531)
Q Consensus 487 wd~ 489 (531)
-+.
T Consensus 306 rr~ 308 (487)
T KOG0310|consen 306 RRR 308 (487)
T ss_pred ehh
Confidence 743
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=8.7e-24 Score=196.16 Aligned_cols=219 Identities=18% Similarity=0.327 Sum_probs=179.3
Q ss_pred eEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC------------------cEEEEcc-CCCcceEEEEccCC
Q 009597 277 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG------------------QVIRTFS-TGKIPYVVKLNPDD 337 (531)
Q Consensus 277 ~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~------------------~~i~~~~-~~~~~~~~~~~~~~ 337 (531)
...+..|++++++.+|++||.++++||.|..|+|.|++.. -+|+++- +...+..+.|+|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-- 182 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-- 182 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc--
Confidence 3556779999999999999999999999999999998621 1344442 234455666766
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCceeEEE--cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEee--CCCC
Q 009597 338 DKQNILLAGMSDKKIVQWDMNTKEITQEY--DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS--EPHM 413 (531)
Q Consensus 338 ~~~~~l~sg~~dg~I~iwd~~t~~~~~~~--~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~~ 413 (531)
...+|++|+.|++|++||+......+.+ .....+|.+|.|+|.|.+|+.|.+-.++++||+.+.++...-. ..|.
T Consensus 183 -re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 -RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred -hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 3479999999999999999754433322 2245689999999999999999999999999999987764432 3588
Q ss_pred CCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 009597 414 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 493 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 493 (531)
..|+++.+++.+++.++++.||.|+|||--+.+++..+..-. ....||+..|..+|+||++.+.|..+++|.+.+++
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH---~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH---GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc---CCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 899999999999999999999999999988887775544332 24679999999999999999999999999999999
Q ss_pred EEEEeecc
Q 009597 494 VFRTLKCH 501 (531)
Q Consensus 494 ~~~~~~~h 501 (531)
++..+.+.
T Consensus 339 ~l~~YtGA 346 (430)
T KOG0640|consen 339 MLKEYTGA 346 (430)
T ss_pred eEEEEecC
Confidence 99988753
No 91
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4e-22 Score=197.82 Aligned_cols=267 Identities=17% Similarity=0.185 Sum_probs=200.2
Q ss_pred CCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEE-EEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEcc
Q 009597 257 NAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNP 335 (531)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l-~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~ 335 (531)
.+++..++.+.+|+..+++++..+.+|.. +.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+..+..+.+++
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 82 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP 82 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC
Confidence 34556788999999999999999987654 7889999999876 567788999999999999888776655555555555
Q ss_pred CCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCC-CEEEEEcCCCeEEEEeeCCCCC
Q 009597 336 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-SLRVWEFGIPVVIKYISEPHMH 414 (531)
Q Consensus 336 ~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~ 414 (531)
+ ...+++++..++.|++||+.+.+.+..+..+ ..+.+++|+|++.++++++.++ .+.+||..+......+.. ..
T Consensus 83 ~--g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~--~~ 157 (300)
T TIGR03866 83 N--GKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV--DQ 157 (300)
T ss_pred C--CCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc--CC
Confidence 3 3345556667899999999998887777533 4568899999999999988775 467789988776655432 34
Q ss_pred CccEEEEeCCCCEEEEEE-cCCeEEEEEcCCcceeceeeeec--CCccccceEEEEEcCCCCEEEEE-eCCCcEEEEECC
Q 009597 415 SMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFA--GHIVAGYACQVNFSPDGRFVMSG-DGEGKCWFWDWK 490 (531)
Q Consensus 415 ~v~~v~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~iwd~~ 490 (531)
...+++|+|++.+|++++ .++.|.+||+.++..+..+.... .+........++|+|++++++++ +.++.|.+||..
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 567899999999886554 68999999999875543322110 01111224468899999986554 456789999999
Q ss_pred CCeEEEEeeccCCcEEEEEEecCCCCEEEEE-eCCCCEEeeC
Q 009597 491 SCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 531 (531)
Q Consensus 491 ~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~-s~Dg~I~iWD 531 (531)
+++.+..+. +...+.+++|+| ++.+|+++ +.+|.|++||
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 238 TYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEE
Confidence 988877654 445788999999 66666665 5699999997
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=5.1e-23 Score=198.85 Aligned_cols=237 Identities=17% Similarity=0.305 Sum_probs=202.7
Q ss_pred CceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCc-ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCcee
Q 009597 285 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 363 (531)
Q Consensus 285 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~ 363 (531)
..|+++...+....+++|+.|..+.++|..+++.+..+..+.. ...+.+++. ...+++++.|..|+||........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~---~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD---LDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc---hhheeecCCcceEEeeccccccCc
Confidence 5788898888877899999999999999999999998854432 233444443 357999999999999999888888
Q ss_pred EEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeC-CCCCCccEEEEeCCCCEEEEEEcCCeEEEEEc
Q 009597 364 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYST 442 (531)
Q Consensus 364 ~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~ 442 (531)
.....|..+|+.+..+|.|.||++++.||+..+.|++++..+..... ...-.+++.+|||||.+|.+|..|+.|+|||+
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 88899999999999999999999999999999999999988776654 23456899999999999999999999999999
Q ss_pred CCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccC-CcEEEEEEecCCCCEEEEE
Q 009597 443 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATC 521 (531)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~l~t~ 521 (531)
.++. ....|.+|. +.|..++|+.+|.||+++..|+.|++||+|..+.+.++.-.. ..|.++.|.+ .+.+|+.+
T Consensus 377 ks~~---~~a~Fpght--~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~ 450 (506)
T KOG0289|consen 377 KSQT---NVAKFPGHT--GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIA 450 (506)
T ss_pred CCcc---ccccCCCCC--CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEee
Confidence 9874 446788884 669999999999999999999999999999999888887443 3689999999 78889988
Q ss_pred eCCCCEEee
Q 009597 522 GWDGLIKYW 530 (531)
Q Consensus 522 s~Dg~I~iW 530 (531)
|.|=.|+++
T Consensus 451 g~~l~Vy~~ 459 (506)
T KOG0289|consen 451 GSDLQVYIC 459 (506)
T ss_pred cceeEEEEE
Confidence 887777664
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4.9e-23 Score=191.64 Aligned_cols=235 Identities=19% Similarity=0.325 Sum_probs=191.5
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCcee
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 363 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~ 363 (531)
...|.+|.|+|.+..|+.++.||++++||+........+...++...++|... ..+++|+.||.|+.+|+.++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~----~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE----STIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC----ceEEEeccCceEEEEEecCCcce
Confidence 56899999999988999999999999999999888888888888777777763 45999999999999999988754
Q ss_pred EEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 009597 364 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 443 (531)
Q Consensus 364 ~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~ 443 (531)
.+..|..+|.||.+++....+++||.|++|++||.+.......+. ....|.++.. .++.|++|+.+..|.+||++
T Consensus 89 -~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 89 -QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred -eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceEEEEEcc
Confidence 455699999999999988999999999999999999755554443 3346666665 58889999999999999999
Q ss_pred CcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeeccCC---------cEEEEEE
Q 009597 444 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEG---------VCIGCEW 510 (531)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~---------~V~~v~~ 510 (531)
+....... ......-.+.++++-|++.-.++++-||.|.+=.+... +.-..|++|.. +|++++|
T Consensus 164 n~~~~~q~---reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 164 NLDEPFQR---RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred cccchhhh---ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 85433211 12222445788999999888999999999988666554 44456777753 7999999
Q ss_pred ecCCCCEEEEEeCCCCEEeeC
Q 009597 511 HPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 511 ~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|| -...|+|||.||.|.+||
T Consensus 241 hp-~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 241 HP-IHGTFATGGSDGIVNIWD 260 (323)
T ss_pred cc-ccceEEecCCCceEEEcc
Confidence 99 567899999999999998
No 94
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-22 Score=185.16 Aligned_cols=235 Identities=18% Similarity=0.270 Sum_probs=197.3
Q ss_pred EecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-cceEEEEccCCCCCcEEEEeeCCCeEEEEEC
Q 009597 279 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 357 (531)
Q Consensus 279 ~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~ 357 (531)
.++||..+++.|.|+.+|.+|.||+.|.++.||-..+|+.+.++..+. .++++.+.++. ..+++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s---~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS---KHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc---ceeeeccccceeEEEEc
Confidence 578999999999999999999999999999999999999999996554 35677777755 47999999999999999
Q ss_pred CCCceeEEEcccCCCeeEEEEecCCCEEEEEeC-----CCCEEEEEcCC-------CeEEEEeeCCCCCCccEEEEeCCC
Q 009597 358 NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-----DKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNT 425 (531)
Q Consensus 358 ~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-----Dg~I~iwd~~~-------~~~~~~~~~~~~~~v~~v~~sp~~ 425 (531)
.+|+++..++ ...+|..+.|+++|++++.+.+ .+.|.++|++. ..+...+.. +...++.+-|.|-+
T Consensus 82 ~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 82 ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLG 159 (327)
T ss_pred CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccC
Confidence 9999999987 4578999999999999887765 45799999983 344555544 56889999999999
Q ss_pred CEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcE
Q 009597 426 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC 505 (531)
Q Consensus 426 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V 505 (531)
++|++|..||.|.+||++++..+... -..|. ..|+.+++++|..++++++.|.+-++||..+..+++++. -..+|
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s--~~~h~--~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~Pv 234 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDS--DEEHS--SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPV 234 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeec--hhhhc--cccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccc
Confidence 99999999999999999998655333 23343 358999999999999999999999999999999999998 45689
Q ss_pred EEEEEecCCCCEEEEEeC
Q 009597 506 IGCEWHPLEQSKVATCGW 523 (531)
Q Consensus 506 ~~v~~~p~~~~~l~t~s~ 523 (531)
++.+++|.....++.||.
T Consensus 235 N~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQ 252 (327)
T ss_pred cceecccccceEEecCCc
Confidence 999999944444444443
No 95
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=4.2e-23 Score=190.47 Aligned_cols=276 Identities=18% Similarity=0.282 Sum_probs=217.5
Q ss_pred hhccCCCCCCCceeeeeecccCe------------ee---EEecCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCCC
Q 009597 253 EEKGNAGGEKGEHVEDKSTFHGK------------CM---RTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETG 316 (531)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~------------~~---~~l~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~ 316 (531)
+++.+.+|+.++.+.+|+..... |+ ..-.+|+-.|.++.|-| |...|.+++.|.+++|||+.+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 35677788899999988865432 21 11246889999999999 6668999999999999999999
Q ss_pred cEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCE-EEEEeCCCCEE
Q 009597 317 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLR 395 (531)
Q Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~-l~s~s~Dg~I~ 395 (531)
+....|.....++...++|-..+..++++|..+-.|++.|+.+|....++.+|.+.|.++.|+|...+ |++|+.||.|+
T Consensus 135 Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 135 QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 99999999999999999988877789999999999999999999999999999999999999998776 77899999999
Q ss_pred EEEcCCC-eEEEEe-------------eCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCcc-c
Q 009597 396 VWEFGIP-VVIKYI-------------SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV-A 460 (531)
Q Consensus 396 iwd~~~~-~~~~~~-------------~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~ 460 (531)
+||++.. .+...+ ...|.+.+..++|..++.++++++.|..+++|+..++...........|.. .
T Consensus 215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~ 294 (397)
T KOG4283|consen 215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT 294 (397)
T ss_pred EEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence 9999764 122111 224677899999999999999999999999999887653211111111110 1
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 461 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 461 ~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+....+. +.+...++---.++.+.++.+-.+..+..+..|-..|.|.++-| +-..+.++..|+.|..|
T Consensus 295 ~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 295 SFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNGNIYMW 362 (397)
T ss_pred cceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCCccccc
Confidence 1111122 33333443334558999999999999999999988999999988 66678999999999988
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4.6e-23 Score=191.05 Aligned_cols=273 Identities=19% Similarity=0.284 Sum_probs=215.3
Q ss_pred HHHHHhh-hhccCCCCCCCceeeeeeccc-Ceee-EEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEc
Q 009597 246 EEYAKKK-EEKGNAGGEKGEHVEDKSTFH-GKCM-RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 322 (531)
Q Consensus 246 ~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~-~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~ 322 (531)
.+++.++ ...+++.++-++.|+.|.... |..+ +....|.++|.+++|+.||+.+++|+.|+.+++||+.+++....-
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA 110 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeee
Confidence 4455555 344566788999999999765 3333 445669999999999999999999999999999999999887776
Q ss_pred cCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 009597 323 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~ 402 (531)
.+...+..+.|..... ..+|++|+.|++|+.||++...++.++... +.+.++.. ...+++++..++.|.+|+++.+
T Consensus 111 ~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred ecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCceeEEEecCCcEEEEEcCCC
Confidence 6666677777766544 358999999999999999999988888743 56666655 3567889999999999999665
Q ss_pred -eEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCcc-------ccceEEEEEcCCCCE
Q 009597 403 -VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV-------AGYACQVNFSPDGRF 474 (531)
Q Consensus 403 -~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------~~~v~~l~~spdg~~ 474 (531)
...+.+..+....+.|+++.++....+.|+-.|.+.|..+..+.. ..-..|+.|.. --.|++|+|+|.-..
T Consensus 187 ~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt 265 (347)
T KOG0647|consen 187 PTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT 265 (347)
T ss_pred cchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccce
Confidence 444555566777899999999988899999999999998877533 22223443431 124788999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEE-EEeCC
Q 009597 475 VMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA-TCGWD 524 (531)
Q Consensus 475 l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~-t~s~D 524 (531)
|++.++||++.+||-.....+.+...|..+|+++.|+. ++.+++ ..|.|
T Consensus 266 lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~-~G~ifaYA~gYD 315 (347)
T KOG0647|consen 266 LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR-NGSIFAYALGYD 315 (347)
T ss_pred EEEecCCceEEEecchhhhhhhccCcCCCccceeEecC-CCCEEEEEeecc
Confidence 99999999999999888888888889999999999999 555544 44443
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.1e-24 Score=221.45 Aligned_cols=237 Identities=18% Similarity=0.387 Sum_probs=192.1
Q ss_pred ceEEEEEcc-CCCEEEEEecCCeEEEEeCCC---CcEEEEccCC-CcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCC
Q 009597 286 AVRDISFCN-DGTKFLTASYDKNIKYWDTET---GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 360 (531)
Q Consensus 286 ~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t---~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~ 360 (531)
.+.+|.|+. +.++|+||+..|.|.+||+.. .+.+..|..+ .....+.|+... .++|++|+.||+|++||++..
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~te--p~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTE--PNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCC--ccEEEecCCCceEEEEeeecc
Confidence 466777875 567899999999999999976 4444455332 334556666654 489999999999999999999
Q ss_pred ceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEE
Q 009597 361 EITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439 (531)
Q Consensus 361 ~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~i 439 (531)
+...++.+....|..+.|+| .+..|+++.+.|.+++||++.+.........|.++|.|+.|+|++.+||+|+.|+.|+|
T Consensus 167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vki 246 (839)
T KOG0269|consen 167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKI 246 (839)
T ss_pred cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEE
Confidence 99999999999999999999 67789999999999999999987665555679999999999999999999999999999
Q ss_pred EEcCCcceeceeeeecCCccccceEEEEEcCCCCE-EEEEe--CCCcEEEEECCC-CeEEEEeeccCCcEEEEEEecCCC
Q 009597 440 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF-VMSGD--GEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQ 515 (531)
Q Consensus 440 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~sgs--~dg~I~iwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~ 515 (531)
|+..+...-.. .+. .....+.++.|-|...+ |++++ .|-.|+|||++. --+..++..|...++.++|...+.
T Consensus 247 Wd~t~~~~~~~-~tI---nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 247 WDMTDSRAKPK-HTI---NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDR 322 (839)
T ss_pred EeccCCCccce-eEE---eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCc
Confidence 99986533211 111 12345888999998665 55554 577899999975 456788889999999999988777
Q ss_pred CEEEEEeCCCCEE
Q 009597 516 SKVATCGWDGLIK 528 (531)
Q Consensus 516 ~~l~t~s~Dg~I~ 528 (531)
..|.+|+.||+|.
T Consensus 323 ~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 323 INLWSCSKDGTVL 335 (839)
T ss_pred eeeEeecCccHHH
Confidence 8999999999863
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.6e-23 Score=212.56 Aligned_cols=246 Identities=15% Similarity=0.255 Sum_probs=202.7
Q ss_pred CccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-cceEEEEccCCCCCcEEEEeeCCCeEEEEECC-C
Q 009597 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-T 359 (531)
Q Consensus 282 gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~-t 359 (531)
+....|++|+.+|+|++|++|..-|+|+||++...+....+..+. .+.++.++...-...+|++++.|..|+|||+. .
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 456689999999999999999999999999998877666664433 34555555544455789999999999999995 4
Q ss_pred CceeEEEcccCCCeeEEEEecCC--CEEEEEeCCCCEEEEEcCCCeEEEEeeC----CCCCCccEEEEeCCCCEEEEEEc
Q 009597 360 KEITQEYDQHLGAVNTITFVDSN--RRFVTSSDDKSLRVWEFGIPVVIKYISE----PHMHSMPSISLHPNTNWLAAQSL 433 (531)
Q Consensus 360 ~~~~~~~~~h~~~I~~l~~sp~~--~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~l~s~s~ 433 (531)
-.+++++.+|...|+++.|.-.| ..+++++.|+.|.+--.+.......+.. .....+..++..|+.+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 56889999999999999999877 7899999999776533332111111111 12346889999999999999999
Q ss_pred CCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecC
Q 009597 434 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 513 (531)
Q Consensus 434 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~ 513 (531)
|..|+||++.++++...++.-.+| .+....+...|.|.||++...|.++.|+|+-+++++....+|...|+.+.|.+
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~--eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n- 693 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDH--EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN- 693 (1080)
T ss_pred ccceEEEeccccceeeeecccccC--CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc-
Confidence 999999999999777555544444 46677899999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCEEee
Q 009597 514 EQSKVATCGWDGLIKYW 530 (531)
Q Consensus 514 ~~~~l~t~s~Dg~I~iW 530 (531)
+...|++.+.||+|.||
T Consensus 694 DCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVW 710 (1080)
T ss_pred cchhheeecCCceEEEE
Confidence 88899999999999999
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.7e-24 Score=213.94 Aligned_cols=269 Identities=20% Similarity=0.286 Sum_probs=217.3
Q ss_pred hccCCCCCCCceeeeeecccCe------eeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC--cEEEEccCC
Q 009597 254 EKGNAGGEKGEHVEDKSTFHGK------CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTG 325 (531)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~------~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~--~~i~~~~~~ 325 (531)
++.+.+|+.++.|+.|+..+.. ++..+..|...|.++....+++.|+|||.|-+|++|+...+ -|+.++..
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~- 115 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT- 115 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc-
Confidence 3457889999999999865432 47888999999999999999999999999999999999877 46666643
Q ss_pred CcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc--eeE--------EEc-ccCCCeeEEEEecCCCEEEEEeCCCCE
Q 009597 326 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQ--------EYD-QHLGAVNTITFVDSNRRFVTSSDDKSL 394 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~--~~~--------~~~-~h~~~I~~l~~sp~~~~l~s~s~Dg~I 394 (531)
|..++-++.+...+..++++|+-|+.|.+||++++. .+. .+. ++...|.+++.++.|..|++|+..+.|
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence 344555555434455799999999999999999772 222 223 788899999999999999999999999
Q ss_pred EEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCE
Q 009597 395 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 474 (531)
Q Consensus 395 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 474 (531)
++||.++...+..+. +|...|.++..+++|..+++++.||+|++||+....++. ++..|.. .+..+..+|+-.+
T Consensus 196 r~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~---T~~vH~e--~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA---TYIVHKE--GVWALQSSPSFTH 269 (735)
T ss_pred EEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee---eEEeccC--ceEEEeeCCCcce
Confidence 999999998888887 699999999999999999999999999999999887664 4555643 3888999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 475 VMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 475 l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+++|+.||.|+.=|+++......+-....+|..+..+.++.. +-+++.|+.|+-|
T Consensus 270 vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~-~WvtTtds~I~rW 324 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNS-VWVTTTDSSIKRW 324 (735)
T ss_pred EEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCC-ceeeeccccceec
Confidence 999999999999999984333323234456777777753444 3667788888877
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.6e-23 Score=211.27 Aligned_cols=240 Identities=15% Similarity=0.293 Sum_probs=193.3
Q ss_pred CccCceE---EEEEcc-CCCEEEEEecCCeEEEEeCCCCc------EEEEccCCCcceEEEEccCCCCCcEEEEeeCCCe
Q 009597 282 GHSKAVR---DISFCN-DGTKFLTASYDKNIKYWDTETGQ------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 351 (531)
Q Consensus 282 gH~~~V~---~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~------~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 351 (531)
.|...|. .+..+. .+++|+|||.||.|++|++.... ++.++. .|..++-.+.... .++.|++++.|-+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~-~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCG-NGKTLISASSDTT 96 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhc-CCCceEEecCCce
Confidence 3555555 455554 56789999999999999985432 233332 2222332222222 2357999999999
Q ss_pred EEEEECCCC--ceeEEEcccCCCeeEEEE-ecCCCEEEEEeCCCCEEEEEcCCCeE----------EEEeeCCCCCCccE
Q 009597 352 IVQWDMNTK--EITQEYDQHLGAVNTITF-VDSNRRFVTSSDDKSLRVWEFGIPVV----------IKYISEPHMHSMPS 418 (531)
Q Consensus 352 I~iwd~~t~--~~~~~~~~h~~~I~~l~~-sp~~~~l~s~s~Dg~I~iwd~~~~~~----------~~~~~~~~~~~v~~ 418 (531)
|++|+...+ -++.++..|.+.|.|+++ -++...+++|+-|+.|.+||+.++.. ...+..++..+|.+
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 999999877 578888999999999999 77888999999999999999987622 12222257788999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009597 419 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 498 (531)
Q Consensus 419 v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 498 (531)
++.+++|..|++|+..+.|++||.+++..+ ..+.||... |..+..++||..++++++||+|++||+...+++.++
T Consensus 177 LA~N~t~t~ivsGgtek~lr~wDprt~~ki---mkLrGHTdN--Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKI---MKLRGHTDN--VRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred eecCCcceEEEecCcccceEEeccccccce---eeeeccccc--eEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 999999999999999999999999998655 445688644 888999999999999999999999999999999999
Q ss_pred eccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 499 KCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 499 ~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
..|...|.++..+| .-..+++|+.||.|..
T Consensus 252 ~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 252 IVHKEGVWALQSSP-SFTHVYSGGRDGNIYR 281 (735)
T ss_pred EeccCceEEEeeCC-CcceEEecCCCCcEEe
Confidence 99999999999998 7789999999999864
No 101
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=4.9e-23 Score=207.36 Aligned_cols=273 Identities=19% Similarity=0.340 Sum_probs=207.5
Q ss_pred cCCCCCCCceeeeeecccCe------eeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE-ccCCCc-
Q 009597 256 GNAGGEKGEHVEDKSTFHGK------CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FSTGKI- 327 (531)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~------~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~-~~~~~~- 327 (531)
+++-+.+++.|.+.++.... .++....|..+|.++.|-|....|++++.|.++++||+++..++.. +..+|.
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~ 145 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG 145 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence 45566777777777654322 2467788999999999999667899999999999999999888765 223343
Q ss_pred -ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCce---------------------------eEEEcccCCCeeE---E
Q 009597 328 -PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---------------------------TQEYDQHLGAVNT---I 376 (531)
Q Consensus 328 -~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~---------------------------~~~~~~h~~~I~~---l 376 (531)
+..++|.+. +...|++|+.||.|.|||++-... +.....+...|.+ +
T Consensus 146 SvkS~cf~~~--n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 146 SVKSECFMPT--NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccchhhhccC--CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 344555555 448999999999999999863220 1122334455555 6
Q ss_pred EEecCCCEEEEEeC-CCCEEEEEcCCCeEEEEeeC-------CC---CCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCc
Q 009597 377 TFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISE-------PH---MHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 445 (531)
Q Consensus 377 ~~sp~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~-------~~---~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~ 445 (531)
.+..|...|++++. |+.|+|||++.......... .+ ...+.++.....|.+|++.+.|+.|++|++...
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 66678888999888 99999999987654322211 11 335778888888999999999999999999874
Q ss_pred ceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEeeccCCcEEEEEEecCCCCEEEEEeCC
Q 009597 446 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWD 524 (531)
Q Consensus 446 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~l~t~s~D 524 (531)
. +.....+.++........-..+|++.+|++|+.|...++|.+.+.+. ...+.+|.-.|++++|.|....-++||+.|
T Consensus 304 s-~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD 382 (720)
T KOG0321|consen 304 S-ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD 382 (720)
T ss_pred C-cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence 2 34455667776665555567899999999999999999999987654 556679999999999999777789999999
Q ss_pred CCEEeeC
Q 009597 525 GLIKYWD 531 (531)
Q Consensus 525 g~I~iWD 531 (531)
..++||+
T Consensus 383 ~~~kiW~ 389 (720)
T KOG0321|consen 383 FRVKIWR 389 (720)
T ss_pred cceEEEe
Confidence 9999996
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=6.8e-23 Score=208.18 Aligned_cols=241 Identities=19% Similarity=0.312 Sum_probs=198.0
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEE--EccCCCcceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~--~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
++.+.+.||...|+.+++.+.. .++++|.||++++|+-...+.+. .+..++.......+........+++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 5678899999999999987654 79999999999999986666554 23323322222122222333569999999999
Q ss_pred EEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEE
Q 009597 353 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s 432 (531)
.+|...+..++..+.+|...|.|+....++. +++||.|.++++|-....... ..+|..+|.++..-|++ .+++|+
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~---l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS---LQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc---cCCcchheeeeeecCCC-cEEecc
Confidence 9999999999999999999999999887777 999999999999987543322 45799999999999987 789999
Q ss_pred cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEec
Q 009597 433 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 433 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p 512 (531)
.|.+|++|.-. ...++|.+|. ..|..+++-+++. +++++.||.|++|++ ++.++..+.+|+.-|.++...+
T Consensus 159 aDKtIklWk~~-----~~l~tf~gHt--D~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 159 ADKTIKLWKGG-----TLLKTFSGHT--DCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred CcceeeeccCC-----chhhhhccch--hheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 99999999864 2346788985 5588999988765 558999999999998 8899999999999999999666
Q ss_pred CCCCEEEEEeCCCCEEeeC
Q 009597 513 LEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 513 ~~~~~l~t~s~Dg~I~iWD 531 (531)
+...++|||.|++++||+
T Consensus 230 -~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 230 -SDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred -CCCeEEEecCCceEEEee
Confidence 677999999999999996
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.7e-23 Score=186.46 Aligned_cols=247 Identities=17% Similarity=0.262 Sum_probs=194.2
Q ss_pred ecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC---cEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEE
Q 009597 280 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 356 (531)
Q Consensus 280 l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~---~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd 356 (531)
-.+|...|.++...--|++|+||+.|++|+|+.++.. +.+.++..+..+.--..-..+..+.+|++++.||+|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3569999999998888999999999999999998764 4566775555443222223345678999999999999999
Q ss_pred CCCCc--eeEEEcccCCCeeEEEEecC--CCEEEEEeCCCCEEEEEcCCC--eEEEEeeCCCCCCccEEEEeCC---C--
Q 009597 357 MNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPN---T-- 425 (531)
Q Consensus 357 ~~t~~--~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~---~-- 425 (531)
-.+++ ...++..|...|++|+|.|. |-.|++++.||.|.|.+++.. .....+...|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 88774 34466789999999999985 457899999999999998764 3444555678999999999985 4
Q ss_pred ---------CEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCC----CEEEEEeCCCcEEEEECCCC
Q 009597 426 ---------NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG----RFVMSGDGEGKCWFWDWKSC 492 (531)
Q Consensus 426 ---------~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg----~~l~sgs~dg~I~iwd~~~~ 492 (531)
+.|++|+.|+.|+||+..+. .-.....+.+| ..++..++|.|.- .+|++++.||+|.||-.+..
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H--~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGH--KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhc--chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 66999999999999999875 22333447788 5789999999963 57999999999999976521
Q ss_pred --eE-EEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 493 --KV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 493 --~~-~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.- ...+......+..+.|++ .+++|+.++.|+.|.+|
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLW 283 (299)
T ss_pred cCcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEE
Confidence 11 112233456899999999 88899999999999998
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1e-23 Score=199.51 Aligned_cols=241 Identities=17% Similarity=0.285 Sum_probs=198.5
Q ss_pred CeeeEEecCccCceEEEEEccCC-CEEEEEecCCeEEEEeCCCCcEEEEccCCC-cceEEEEccCCCCCcEEEEeeCCCe
Q 009597 274 GKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKK 351 (531)
Q Consensus 274 ~~~~~~l~gH~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~ 351 (531)
...+..|.||...|.|++=+|.. ..++||+.||.|+|||+.+..++.+|..+. .+.-+++.. ..+++++.|.+
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-----~~~~tvgdDKt 130 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-----TSFFTVGDDKT 130 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-----cceEEecCCcc
Confidence 44567789999999999999976 679999999999999999999999997766 344455544 35899999999
Q ss_pred EEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCC-CCEEEE
Q 009597 352 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAA 430 (531)
Q Consensus 352 I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s 430 (531)
|+.|.+.. .++.++.+ ...+..|.-+..+..|+||+.+ |.|||.....++..+.. ....|.++.|+|. ..+|++
T Consensus 131 vK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 131 VKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILAS 205 (433)
T ss_pred eeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeecccccCCccceeec-CCCceeEEecCCCcchheee
Confidence 99999875 46666653 3567778887778889999875 99999988888877765 4678999999995 566777
Q ss_pred EEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeeccCCcEEEEE
Q 009597 431 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCE 509 (531)
Q Consensus 431 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~v~ 509 (531)
+++|+.|.+||++....+..+.. ....+.|+|+|.+-.+++|++|.+++.+|++.. .++...++|...|.++.
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi~------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVIL------TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred eccCCceEEEecccCCccceeee------eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence 88999999999999877654432 122445999998888999999999999999864 56778889999999999
Q ss_pred EecCCCCEEEEEeCCCCEEeeC
Q 009597 510 WHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 510 ~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|+| .+.-+++||.|.+|+||.
T Consensus 280 fsp-tG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 280 FSP-TGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred cCC-CcchhccccccceEEEee
Confidence 999 777899999999999984
No 105
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=1.3e-23 Score=189.73 Aligned_cols=229 Identities=20% Similarity=0.323 Sum_probs=187.0
Q ss_pred ccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcE-EEEccCCC-cceEEE
Q 009597 255 KGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IRTFSTGK-IPYVVK 332 (531)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~-i~~~~~~~-~~~~~~ 332 (531)
...+++..+-+.++|+..+|..++.|. |+.-|.+++|+.|.++|++|+.++.+||+|++..+. ...+..+. .+..+.
T Consensus 72 ~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~ 150 (334)
T KOG0278|consen 72 TRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL 150 (334)
T ss_pred hhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE
Confidence 345566777888999999999999997 999999999999999999999999999999976543 23332222 223333
Q ss_pred EccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCC
Q 009597 333 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 412 (531)
Q Consensus 333 ~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 412 (531)
|+..+ +.|++.+.|++|++||.+++..++++. ...+|+++.++++|++|.+ ...+.|.+||..+...++... .
T Consensus 151 wc~eD---~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k--~ 223 (334)
T KOG0278|consen 151 WCHED---KCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYK--M 223 (334)
T ss_pred EeccC---ceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeecc--C
Confidence 43322 468888999999999999999999987 4578999999999986555 456779999999988887765 4
Q ss_pred CCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 009597 413 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 492 (531)
Q Consensus 413 ~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 492 (531)
...|.+..++|+...+++|+.|..++.||..++..+... .++| .+.|.|+.|+|+|...++|+.||+|++|....+
T Consensus 224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh--~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGH--FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCC--CCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 567899999999999999999999999999998766442 3566 466999999999999999999999999998766
Q ss_pred eEE
Q 009597 493 KVF 495 (531)
Q Consensus 493 ~~~ 495 (531)
+..
T Consensus 300 ~~~ 302 (334)
T KOG0278|consen 300 KTY 302 (334)
T ss_pred Cch
Confidence 544
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.6e-23 Score=201.27 Aligned_cols=228 Identities=18% Similarity=0.258 Sum_probs=194.0
Q ss_pred hhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceE
Q 009597 251 KKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 330 (531)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~ 330 (531)
..+++.....+.++.+++|+....+...+|.||+..|+++.|......+++|+.|.+|++||+....|.+++-.......
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnD 307 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCND 307 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccc
Confidence 34444455567788899999999999999999999999999998777799999999999999999999988876666555
Q ss_pred EEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeC
Q 009597 331 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE 410 (531)
Q Consensus 331 ~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 410 (531)
+.+. ...+++|-.|++|++||+++..++.+...+. .|+++..++++..+++++.|.++.+.|+++......+..
T Consensus 308 I~~~-----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 308 IVCS-----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred eEec-----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence 5544 2469999999999999999999999998874 999999999999999999999999999999877766543
Q ss_pred C---CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 009597 411 P---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 487 (531)
Q Consensus 411 ~---~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iw 487 (531)
. ..+..+.+.|+|++.|+++|+.||.|+||++.+++....... ......|+++.|+|.|.+|++++.++.+.+|
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~---s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL---STSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc---CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 2 234588999999999999999999999999998866544333 2222359999999999999999999999999
No 107
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=2.7e-22 Score=213.69 Aligned_cols=245 Identities=20% Similarity=0.318 Sum_probs=196.5
Q ss_pred ccCceEEEEEccCCCEEEEEe--cCCeEEEEeCCCC------------cEEEEc-cCCCcceEEEEccCCCCCcEEEEee
Q 009597 283 HSKAVRDISFCNDGTKFLTAS--YDKNIKYWDTETG------------QVIRTF-STGKIPYVVKLNPDDDKQNILLAGM 347 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s--~Dg~I~vWd~~t~------------~~i~~~-~~~~~~~~~~~~~~~~~~~~l~sg~ 347 (531)
+...|.+|..+|||..++||+ .|+.++||+.+.- +.+.+. .+...+.|+.|.++ +.+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d---G~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD---GSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC---CCeEeecc
Confidence 345799999999999999999 9999999986431 112222 22334455666664 46899999
Q ss_pred CCCeEEEEECCC------------------CceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEee
Q 009597 348 SDKKIVQWDMNT------------------KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 409 (531)
Q Consensus 348 ~dg~I~iwd~~t------------------~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 409 (531)
.|+.|.||.... .+.+..+.+|...|..++|+|++.+|++++.|++|.||+.++...+..+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999998762 12577889999999999999999999999999999999999997776665
Q ss_pred CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceee-eecCCccccceEEEEEcCCCCEEEEEeC----CCcE
Q 009597 410 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK-RFAGHIVAGYACQVNFSPDGRFVMSGDG----EGKC 484 (531)
Q Consensus 410 ~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~sgs~----dg~I 484 (531)
.|...|..+.|.|-|+||++.+.|++|+||.+.+......+. .|.......+...+.|||||.+|++... -.++
T Consensus 169 -~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 169 -GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred -cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 599999999999999999999999999999976633332222 2332334566888999999999998752 3468
Q ss_pred EEEECCCCeEEEEeeccCCcEEEEEEecC----C--------C----CEEEEEeCCCCEEeeC
Q 009597 485 WFWDWKSCKVFRTLKCHEGVCIGCEWHPL----E--------Q----SKVATCGWDGLIKYWD 531 (531)
Q Consensus 485 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~----~--------~----~~l~t~s~Dg~I~iWD 531 (531)
.|.+-.+.+.-..+.+|.++|.++.|+|. . . ..+|+||.|++|.||.
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 89998889989999999999999999982 1 1 1789999999999995
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1e-22 Score=198.64 Aligned_cols=247 Identities=19% Similarity=0.347 Sum_probs=202.1
Q ss_pred CCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-cceEEEEccCCCCC
Q 009597 262 KGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQ 340 (531)
Q Consensus 262 ~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~ 340 (531)
....+.+|..........+.--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..+- ...++.|.-+ +
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~d---g 135 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDD---G 135 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCC---C
Confidence 33456667665444444344456789999999999999988899999999999999998884332 2344444443 3
Q ss_pred cEEEEeeCCCeEEEEECC---------CCceeEEEcccCCCeeEEEEecC--CCEEEEEeCCCCEEEEEcCCCeEEEEee
Q 009597 341 NILLAGMSDKKIVQWDMN---------TKEITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVVIKYIS 409 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~---------t~~~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 409 (531)
.+|++|+.||.|.+|++. +-+++..+..|.-+|+.+...+. ..+++|+|.|.++++||+..+..+..+.
T Consensus 136 s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 136 SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 689999999999999872 34678899999999999988764 4689999999999999999999888876
Q ss_pred CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcc-------------eeceeeeecCCccccceEEEEEcCCCCEEE
Q 009597 410 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF-------------QLNKKKRFAGHIVAGYACQVNFSPDGRFVM 476 (531)
Q Consensus 410 ~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~-------------~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 476 (531)
....+.+++++|.+..+.+|+.+|.|.+.++.... .......+.||.....|+|++++-||.+|+
T Consensus 216 --fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 216 --FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred --cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 56789999999999999999999999998865422 123345678887767899999999999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecC
Q 009597 477 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 513 (531)
Q Consensus 477 sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~ 513 (531)
+|+.||+|+|||+.+.++++++....++|+.+.+.|.
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 9999999999999999999998877889999999764
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=3.1e-22 Score=203.40 Aligned_cols=255 Identities=15% Similarity=0.293 Sum_probs=206.9
Q ss_pred cCCCCCCCceeeeeecccCeee--EEecCccCceEE-EEEcc-CCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEE
Q 009597 256 GNAGGEKGEHVEDKSTFHGKCM--RTYMGHSKAVRD-ISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 331 (531)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~--~~l~gH~~~V~~-l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~ 331 (531)
....+++++.+++|.....+.+ ..+.+|.+-|.+ ++|-+ ++-+|++|+.|.+|.+|.+.+...+.++..+ ...++
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH-~snVC 105 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH-KSNVC 105 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcc-cccee
Confidence 3456788888999987555443 457889998888 88886 4456999999999999999999999998554 44555
Q ss_pred EEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC
Q 009597 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 411 (531)
Q Consensus 332 ~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 411 (531)
+++.... ..+++|+.|.++++|-+ +++...+.+|...|+++...|++ .++|||.|++|++|.- +..++.+. +
T Consensus 106 ~ls~~~~--~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-g 177 (745)
T KOG0301|consen 106 SLSIGED--GTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-G 177 (745)
T ss_pred eeecCCc--CceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-c
Confidence 5554433 24999999999999976 56777799999999999999988 8999999999999985 45566665 4
Q ss_pred CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009597 412 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 412 ~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 491 (531)
|...|..+++-+++. |++++.||.|++|++.. .++ ..+.+|. .++.++....++..++++++|++++||+..
T Consensus 178 HtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~g-e~l---~~~~ght--n~vYsis~~~~~~~Ivs~gEDrtlriW~~~- 249 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG-EVL---LEMHGHT--NFVYSISMALSDGLIVSTGEDRTLRIWKKD- 249 (745)
T ss_pred chhheeeeEEecCCC-eEeecCCceEEEEeccC-cee---eeeeccc--eEEEEEEecCCCCeEEEecCCceEEEeecC-
Confidence 999999999997654 78999999999999944 333 4567774 567788888889999999999999999976
Q ss_pred CeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 492 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 492 ~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.+.+.+......|+++.+.+ ++. +++|+.||.||||
T Consensus 250 -e~~q~I~lPttsiWsa~~L~-NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 250 -ECVQVITLPTTSIWSAKVLL-NGD-IVVGGSDGRVRVF 285 (745)
T ss_pred -ceEEEEecCccceEEEEEee-CCC-EEEeccCceEEEE
Confidence 77777775556899999988 554 7788889999998
No 110
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.9e-22 Score=187.77 Aligned_cols=281 Identities=17% Similarity=0.247 Sum_probs=221.8
Q ss_pred HHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC
Q 009597 245 AEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 324 (531)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 324 (531)
..+...++-+..++.|..+|.+-+|+..+...-+.|.+|..+|++++||+||+.|+|+|.|..|++||+..|.+++.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 35667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcc--c----CCCeeEEEEecCCCEEEEEeCCCCEEEEE
Q 009597 325 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ--H----LGAVNTITFVDSNRRFVTSSDDKSLRVWE 398 (531)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~--h----~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd 398 (531)
..+++.+.+++... +.+++.-.+..-.+-++..+ ++.+-. . ...-.+..|.+.|+++++|...|.+.++|
T Consensus 106 ~spv~~~q~hp~k~--n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKR--NKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred cCccceeeeccccC--CeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 99988888888654 45555555544555555432 222211 1 11223446889999999999999999999
Q ss_pred cCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcc------eeceeeeecCCccccceEEEEEcCCC
Q 009597 399 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF------QLNKKKRFAGHIVAGYACQVNFSPDG 472 (531)
Q Consensus 399 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~------~~~~~~~~~~~~~~~~v~~l~~spdg 472 (531)
..+.+++..+.......|..+.++..|..|+.-+.|..|+.|+++.-. .+.....+..-.+...-.+++||.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 999988877766455789999999999999999999999999987421 11111222222233335568999999
Q ss_pred CEEEEEeC-CCcEEEEECCCCeEEEEeeccC-CcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 473 RFVMSGDG-EGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 473 ~~l~sgs~-dg~I~iwd~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.|++.|+. -..++||.-..|.+++.+.+.. .....+.|+| -...+++- ..|.|++|.
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWA 320 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEE
Confidence 99988873 4579999999999999998877 4678899999 55567766 689999994
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=205.12 Aligned_cols=244 Identities=17% Similarity=0.303 Sum_probs=200.9
Q ss_pred cCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC-cEEEEcc-CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECC
Q 009597 281 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 358 (531)
Q Consensus 281 ~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~ 358 (531)
.+|+..-+.|+|.|+|.+|++|+.||.|++|+.... +.-.++. .+..+ ..+.... +.|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v--~~ia~~s---~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELV--SSIACYS---NHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCcee--EEEeecc---cceEEeeccceEEEeeCC
Confidence 369999999999999999999999999999987655 3333333 23333 3333322 479999999999999999
Q ss_pred CCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEE
Q 009597 359 TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 438 (531)
Q Consensus 359 t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~ 438 (531)
+++.-..+....-++.+++|+-+|++++.||+|-.|++.++........+. +|..+|.++.|+|++++||+.+.||+|+
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 888766666677899999999999999999999999999999887776665 5999999999999999999999999999
Q ss_pred EEEcCCcceeceeeeec---CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee--ccCCcEEEEEEecC
Q 009597 439 IYSTRERFQLNKKKRFA---GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK--CHEGVCIGCEWHPL 513 (531)
Q Consensus 439 iwd~~~~~~~~~~~~~~---~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~v~~~p~ 513 (531)
||++.++.....+.... .......++.++|+|+|..++....|+.|.+|+...+.....+. .|...+..+.|+|
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP- 242 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP- 242 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-
Confidence 99999876543332221 12224557789999998888888899999999999999888876 3445589999999
Q ss_pred CCCEEEEEeCCCCEEeeC
Q 009597 514 EQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 514 ~~~~l~t~s~Dg~I~iWD 531 (531)
++.+||+++.||.|.|||
T Consensus 243 nG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWN 260 (933)
T ss_pred CCcEEeeeccCCcEEEEe
Confidence 799999999999999997
No 112
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.8e-21 Score=179.63 Aligned_cols=245 Identities=18% Similarity=0.323 Sum_probs=184.7
Q ss_pred cCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc----EEEEccCCCc-ceEEEEccCCCCCcEEEEeeCCCeEEEE
Q 009597 281 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQW 355 (531)
Q Consensus 281 ~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~----~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iw 355 (531)
.+|..-|.|+.|.+-|+++++|+.|++|+|||..... +....+.+.. ...+.+. .+.-+.++++++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WA-hPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWA-HPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEec-CccccceEEEEecCCceeee
Confidence 5799999999999999999999999999999964432 3333333333 2333333 23456899999999999999
Q ss_pred ECC---------CCceeEEEcccCCCeeEEEEec--CCCEEEEEeCCCCEEEEEcCCCeEEEEee------------CCC
Q 009597 356 DMN---------TKEITQEYDQHLGAVNTITFVD--SNRRFVTSSDDKSLRVWEFGIPVVIKYIS------------EPH 412 (531)
Q Consensus 356 d~~---------t~~~~~~~~~h~~~I~~l~~sp--~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~------------~~~ 412 (531)
.-. ......++......|+.|.|.| -|-.|++++.||.||||+.-.+..+.... ..+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 752 1123455666778999999999 46679999999999999976553332211 124
Q ss_pred CCCccEEEEeC---CCCEEEEEEcC-----CeEEEEEcCCcc-eeceeeeecCCccccceEEEEEcCC----CCEEEEEe
Q 009597 413 MHSMPSISLHP---NTNWLAAQSLD-----NQILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPD----GRFVMSGD 479 (531)
Q Consensus 413 ~~~v~~v~~sp---~~~~l~s~s~D-----g~I~iwd~~~~~-~~~~~~~~~~~~~~~~v~~l~~spd----g~~l~sgs 479 (531)
..+..|+.|+| ...+|++|+.+ +.+.||...... .......+.+| ...|..|+|.|+ ..+|++++
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~--~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH--TDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC--CCcceeeeeccccCCceeeEEEee
Confidence 45677899998 35778888766 588899766543 44555666666 466999999995 45789999
Q ss_pred CCCcEEEEECCCC--------------------eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 480 GEGKCWFWDWKSC--------------------KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 480 ~dg~I~iwd~~~~--------------------~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.|| |+||.++.. +.+..+..|.+.|..+.|+- .+..|++.|.||+||+|
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLW 315 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeeh
Confidence 999 999998731 24566778999999999998 78899999999999999
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.6e-22 Score=186.76 Aligned_cols=247 Identities=18% Similarity=0.315 Sum_probs=208.9
Q ss_pred CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-cceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 274 ~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
.++++.|.||+..|+.++-......+.+++.|.+.+||.+++|.|+.++..+. .+.++.|++ .+.++++++.|++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~---s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN---SGLLLLTASGDETA 214 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc---ccceEEEccCCcch
Confidence 46788999999999999998777789999999999999999999999996543 345666666 34689999999999
Q ss_pred EEEEC------CC----------------------------------CceeEEEcccCCCeeEEEEecCCCEEEEEeCCC
Q 009597 353 VQWDM------NT----------------------------------KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK 392 (531)
Q Consensus 353 ~iwd~------~t----------------------------------~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg 392 (531)
.||.. .. ..++..+.+|.+.|.+..|...|+.+++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 99962 11 012567788999999999999999999999999
Q ss_pred CEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCC
Q 009597 393 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 472 (531)
Q Consensus 393 ~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 472 (531)
+..+||++++..+..+. +|....+.++-+|..+++++.+.|.+.++||++ ..+..+..|.||. ..|+++.|..+.
T Consensus 295 TAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHt--dtVTS~vF~~dd 369 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHT--DTVTSVVFNTDD 369 (481)
T ss_pred cceeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccc--cceeEEEEecCC
Confidence 99999999999887775 599999999999999999999999999999998 4567778899996 458999998765
Q ss_pred CEEEEEeCCCcEEEEECCCCe-EEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 473 RFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 473 ~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.+++|+.|.+|+|||+++.+ ++.++. -..+++.++.+. +..+++.--.+..|++||
T Consensus 370 -~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 370 -RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred -ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEe
Confidence 56799999999999999754 566666 456788898887 777888888888899987
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=2e-22 Score=197.58 Aligned_cols=255 Identities=14% Similarity=0.257 Sum_probs=205.1
Q ss_pred CceeeeeecccC---eeeEEec--CccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC-C--CcceEEEEc
Q 009597 263 GEHVEDKSTFHG---KCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-G--KIPYVVKLN 334 (531)
Q Consensus 263 ~~~i~~~~~~~~---~~~~~l~--gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~--~~~~~~~~~ 334 (531)
.+.|++|++-.. .++..|. .-..-|+++.+.|||+.|++|++-.+|.|||+......-.... . ...+.+.++
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s 518 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 518 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC
Confidence 356788886432 2222222 2345799999999999999999999999999976544322222 1 223445555
Q ss_pred cCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCC
Q 009597 335 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH 414 (531)
Q Consensus 335 ~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 414 (531)
++ .++.++++.||.|.|||+++...++.|.+|.+.+.||.++++|..|.+|+-|.+||.||++.+..+... ....
T Consensus 519 pD---akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~S 593 (705)
T KOG0639|consen 519 PD---AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSS 593 (705)
T ss_pred Cc---cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhh
Confidence 54 368999999999999999999999999999999999999999999999999999999999998766443 2567
Q ss_pred CccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 009597 415 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 494 (531)
Q Consensus 415 ~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~ 494 (531)
.|.++.++|++.||++|..++.+.|....... .+.-|.....|.++.|.+.|+++++.+.|..+..|...-|..
T Consensus 594 QIfSLg~cP~~dWlavGMens~vevlh~skp~------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 667 (705)
T ss_pred hheecccCCCccceeeecccCcEEEEecCCcc------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc
Confidence 89999999999999999999999998876532 233355567799999999999999999999999999988887
Q ss_pred EEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 495 FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 495 ~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+...+ ....|.+|.++- +..+++||+.|..-.||
T Consensus 668 iFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 668 IFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATVY 701 (705)
T ss_pred eeecc-ccCcceeeeecc-CceEEEecCCCcceEEE
Confidence 77766 456799999998 78899999999876665
No 115
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-20 Score=168.10 Aligned_cols=252 Identities=20% Similarity=0.330 Sum_probs=195.9
Q ss_pred cCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCC------CC--------cEEEE--ccCCCcceEEEEccC
Q 009597 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE------TG--------QVIRT--FSTGKIPYVVKLNPD 336 (531)
Q Consensus 273 ~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~------t~--------~~i~~--~~~~~~~~~~~~~~~ 336 (531)
+-+++..+. .+.+|++++|+|.|.+.+.|+..++++|--.. .+ .++.. -.+....+|.+|++.
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 345566665 67799999999999999999999999987432 11 11111 112334566667664
Q ss_pred CCCCcEEEEeeCCCeEEEEECCCCce-----eEEEcccCCCeeEEEEecC----CCEEEEEe-CCCCEEEEEcCCCeEEE
Q 009597 337 DDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGAVNTITFVDS----NRRFVTSS-DDKSLRVWEFGIPVVIK 406 (531)
Q Consensus 337 ~~~~~~l~sg~~dg~I~iwd~~t~~~-----~~~~~~h~~~I~~l~~sp~----~~~l~s~s-~Dg~I~iwd~~~~~~~~ 406 (531)
+.++++|+.|.+|++.-++...+ -.++.-|.+.|..++|..+ +..|++++ .|..|++-|...++...
T Consensus 101 ---geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 101 ---GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred ---cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence 46999999999999987654332 3467889999999999863 44666655 46778888998888887
Q ss_pred EeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeee-e-cCCccccceEEEEEcCCCCEEEEEeCCCcE
Q 009597 407 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-F-AGHIVAGYACQVNFSPDGRFVMSGDGEGKC 484 (531)
Q Consensus 407 ~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~-~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 484 (531)
.+.. |.+-|.++ ++-++-.|++|+.|.+|++||++-..++..+.. + .+......|..++..|.|++|++|..|...
T Consensus 178 a~sg-htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc 255 (350)
T KOG0641|consen 178 ALSG-HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC 255 (350)
T ss_pred eecC-CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce
Confidence 7754 77777665 344788999999999999999998766654432 1 122223568889999999999999999999
Q ss_pred EEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 485 WFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 485 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.+||++.+++++.+..|...|.++.|+| +..+++||+.|..|++=|
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEee
Confidence 9999999999999999999999999999 889999999999999854
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-21 Score=189.66 Aligned_cols=257 Identities=17% Similarity=0.224 Sum_probs=198.8
Q ss_pred CceeeeeecccCeeeEEecCcc-CceEEEEEccCCCEEEEEecC-CeEEEEeCCCCcEEE-EccCCCcceEEEEccCCCC
Q 009597 263 GEHVEDKSTFHGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYD-KNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDK 339 (531)
Q Consensus 263 ~~~i~~~~~~~~~~~~~l~gH~-~~V~~l~fspdg~~l~s~s~D-g~I~vWd~~t~~~i~-~~~~~~~~~~~~~~~~~~~ 339 (531)
...+..|+..+|..+.+|+|-. ..-.++..- .+.+++++... ..|.+|.+....... .+.......++... +.
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~---n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS---NL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC---CC
Confidence 3458899999999999998862 222222221 33567766543 478999886554433 22233333333333 35
Q ss_pred CcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcC---------CCeEEEEeeC
Q 009597 340 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG---------IPVVIKYISE 410 (531)
Q Consensus 340 ~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~---------~~~~~~~~~~ 410 (531)
+.++++|+..|.|++|.+.+|..+..+..|-..|+|+.|+.|+.+|+|||.||.|.+|++- +..++..+.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~- 171 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS- 171 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-
Confidence 5788888899999999999999999999999999999999999999999999999999873 233444443
Q ss_pred CCCCCccEEEEeCC--CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009597 411 PHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 488 (531)
Q Consensus 411 ~~~~~v~~v~~sp~--~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd 488 (531)
.|.-+|+.+...+. ..+|++++.|.+|++||+..+..+..+. + ...+.+++.+|-++.+++|+.+|.|.+.+
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-f-----p~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-F-----PSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-c-----CCcceeEEEcccccEEEecCCcceEEeee
Confidence 48899999888764 4689999999999999999886553322 2 34477899999999999999999999987
Q ss_pred CCC----------------CeEEEEeeccCC--cEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 489 WKS----------------CKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 489 ~~~----------------~~~~~~~~~h~~--~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+.. +..+..+.+|.+ .|+|++++- ++.+|++|+.||.++|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEe
Confidence 643 234667788988 999999998 889999999999999998
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-21 Score=176.47 Aligned_cols=248 Identities=19% Similarity=0.299 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCceeeeeecccC---eeeEEecCccCceEEEEEcc--CCCEEEEEecCCeEEEEeCC
Q 009597 240 EQKKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHG---KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTE 314 (531)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~gH~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~ 314 (531)
.++..+......--++.+++.+.++.|+++..... +++.+|.||+++|..++|.. -|.+|++|++||.|.||.-+
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 34455556666677888999999999999886543 67899999999999999975 69999999999999999988
Q ss_pred CCcEEEEc--c-CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCC---ceeEEEcccCCCeeEEEEecC---C---
Q 009597 315 TGQVIRTF--S-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDS---N--- 382 (531)
Q Consensus 315 t~~~i~~~--~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~---~~~~~~~~h~~~I~~l~~sp~---~--- 382 (531)
+++-.+.. . +...+..+++.|..- +.+|+++++||.|.|.++++. ........|.-.|++++|.|. |
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 87543322 1 233456677777653 578999999999999998754 234455789999999999985 4
Q ss_pred --------CEEEEEeCCCCEEEEEcCCCeEE-EEeeCCCCCCccEEEEeCCC----CEEEEEEcCCeEEEEEcCCcceec
Q 009597 383 --------RRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNT----NWLAAQSLDNQILIYSTRERFQLN 449 (531)
Q Consensus 383 --------~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~v~~v~~sp~~----~~l~s~s~Dg~I~iwd~~~~~~~~ 449 (531)
++|++|+.|..|+||+.....-+ ......|..-|..++|.|.- .+|++++.||+|.||..+......
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 57999999999999999886322 22245699999999999953 679999999999999877432222
Q ss_pred eeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009597 450 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 490 (531)
Q Consensus 450 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 490 (531)
....+. .....+.++.||..|++|++++.|++|.+|--.
T Consensus 248 k~tll~--~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLE--EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccc--cCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 222222 234558889999999999999999999999643
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=2.6e-20 Score=192.87 Aligned_cols=267 Identities=15% Similarity=0.247 Sum_probs=207.8
Q ss_pred CCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC-CcceEEEEccC
Q 009597 258 AGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPD 336 (531)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~ 336 (531)
.-|...|.+.+|+..+++.+.+|+++...|+++.=+|--..++.|..+|+|.|+++..++.+.+|... ..+..++|.-
T Consensus 176 vvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt- 254 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT- 254 (910)
T ss_pred EEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc-
Confidence 34677889999999999999999999999999999998778999999999999999999999999876 4444555554
Q ss_pred CCCCcEEEEeeCCCeEEEEECCCCceeEEEc-ccC---------------------------------------------
Q 009597 337 DDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHL--------------------------------------------- 370 (531)
Q Consensus 337 ~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~-~h~--------------------------------------------- 370 (531)
++..++++|+..|.+.+||++..+.+..+. .|.
T Consensus 255 -DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH 333 (910)
T KOG1539|consen 255 -DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGH 333 (910)
T ss_pred -CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCC
Confidence 444688888888999999886544322111 222
Q ss_pred --------------------------------------------------------------------------------
Q 009597 371 -------------------------------------------------------------------------------- 370 (531)
Q Consensus 371 -------------------------------------------------------------------------------- 370 (531)
T Consensus 334 s~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 334 SAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred CCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence
Q ss_pred -----------------------------------CCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEe--eCCCC
Q 009597 371 -----------------------------------GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI--SEPHM 413 (531)
Q Consensus 371 -----------------------------------~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~--~~~~~ 413 (531)
..+++++.++.|++.+.|+..|.|-+|++.++.....+ ...|.
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK 493 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc
Confidence 23444455555555555555555555555555544444 23588
Q ss_pred CCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceece--------------------------------------eeeec
Q 009597 414 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK--------------------------------------KKRFA 455 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~--------------------------------------~~~~~ 455 (531)
.+|+.++...-++.+++++.+|.+.+||......+.. .+.|.
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 8999999999899999999999999999876542111 12356
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCC-CCEEee
Q 009597 456 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD-GLIKYW 530 (531)
Q Consensus 456 ~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~D-g~I~iW 530 (531)
||. ..++.++|||||++|++++.|++|++||+.++.++-.+. -..+++++.|+| ++.+|||...| .-|++|
T Consensus 574 gh~--nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP-ngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 574 GHG--NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP-NGDFLATVHVDQNGIYLW 645 (910)
T ss_pred ccc--cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC-CCCEEEEEEecCceEEEE
Confidence 664 559999999999999999999999999999999998886 456889999999 89999999998 569998
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.3e-21 Score=180.52 Aligned_cols=264 Identities=15% Similarity=0.181 Sum_probs=205.9
Q ss_pred hhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceE
Q 009597 251 KKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 330 (531)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~ 330 (531)
++....+..+.-++.++.++.....+...|+ |..++.+++|.++ ..+++|+.||.|+++|+.++.....-.+.....+
T Consensus 22 ~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~c 99 (323)
T KOG1036|consen 22 SPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRC 99 (323)
T ss_pred cCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeeccCCCceEE
Confidence 3333444445577888888876665555554 9999999999975 4699999999999999999988887777778888
Q ss_pred EEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEe-e
Q 009597 331 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI-S 409 (531)
Q Consensus 331 ~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~-~ 409 (531)
+...+.. ..+++|+.|++|++||.+....+..+... ..|.++... ++.|++|+.|..|.+||++........ .
T Consensus 100 i~~~~~~---~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~re 173 (323)
T KOG1036|consen 100 IEYSYEV---GCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRE 173 (323)
T ss_pred EEeeccC---CeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhcc
Confidence 8777543 57999999999999999986666666544 478888774 778999999999999999986544322 2
Q ss_pred CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCc-ceeceeeeecCCc-------cccceEEEEEcCCCCEEEEEeCC
Q 009597 410 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER-FQLNKKKRFAGHI-------VAGYACQVNFSPDGRFVMSGDGE 481 (531)
Q Consensus 410 ~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~-------~~~~v~~l~~spdg~~l~sgs~d 481 (531)
......+.|+++-|++.-+++++-||.|.+=.+... ....+.-.|..|. ..-.|+.|+|+|-...|++|+.|
T Consensus 174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 234557889999998888999999999988555443 1112222333332 23458889999999999999999
Q ss_pred CcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeC
Q 009597 482 GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523 (531)
Q Consensus 482 g~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~ 523 (531)
|.|.+||+.+.+.+..+......|.+++|+. ++..||+++.
T Consensus 254 G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred ceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 9999999999999999887778899999998 7788888764
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.2e-22 Score=204.61 Aligned_cols=240 Identities=16% Similarity=0.325 Sum_probs=186.9
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCCC----cEEEEccCCCc--ceEEEEccCCCCCcEEEEeeCCCeEEEEECCC
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTETG----QVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 359 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~----~~i~~~~~~~~--~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t 359 (531)
.+..|..+++-..++.++. ..++|+.+... .+...+..... ..+..+.+..-..++|++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 4556667788778888885 47888877543 22222211111 11222223233458999999999999999976
Q ss_pred ---CceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC-CCCEEEEEEcC
Q 009597 360 ---KEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLD 434 (531)
Q Consensus 360 ---~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~s~D 434 (531)
.+.+..|..|...++++.|++ ...+|++||.||+|++||++.......+.. ...+|..|.|+| .+.+|+++...
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecCC
Confidence 566778899999999999998 556899999999999999999877766654 778899999999 68899999999
Q ss_pred CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecc-CCcEEEEEEecC
Q 009597 435 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPL 513 (531)
Q Consensus 435 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~v~~~p~ 513 (531)
|.+++||+|...+. ...+..| .+.+.|+.|+|++.+||+|+.|+.|+|||+.+.+.......+ ..+|.+|.|-|.
T Consensus 199 G~lqlWDlRqp~r~--~~k~~AH--~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRC--EKKLTAH--NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred ceEEEeeccCchhH--HHHhhcc--cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 99999999975432 3456667 577999999999999999999999999999876554433333 348999999998
Q ss_pred CCCEEEEEeC--CCCEEeeC
Q 009597 514 EQSKVATCGW--DGLIKYWD 531 (531)
Q Consensus 514 ~~~~l~t~s~--Dg~I~iWD 531 (531)
....|++|+. |-.|+|||
T Consensus 275 ~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred ccchhhhhhccccceEEEEe
Confidence 8889999986 78899998
No 121
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.8e-22 Score=202.69 Aligned_cols=241 Identities=19% Similarity=0.257 Sum_probs=205.8
Q ss_pred HHHHHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecC-ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEE
Q 009597 242 KKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 320 (531)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~g-H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~ 320 (531)
...+..+.+..++..++.|..++.+.+|+....+.++++.+ |...|-+++|+ +..+.+|+.|+.|..+|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 45567788999999999999999999999999999999999 99999999998 5679999999999999998877665
Q ss_pred EccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEec-CCCEEEEEe--CCCCEEEE
Q 009597 321 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRRFVTSS--DDKSLRVW 397 (531)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s--~Dg~I~iw 397 (531)
....+|...++.+.+..+ +.++++|+.|+.+.|||....++...+..|..+|.+++|+| ....||+|+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 533445555555555443 47899999999999999999999999999999999999999 566788764 69999999
Q ss_pred EcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEE--EEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEE
Q 009597 398 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA--QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 475 (531)
Q Consensus 398 d~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s--~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 475 (531)
|..++..+..+. ....|.++.|++..+-|++ |..++.|.||+..+. .....+.+|. ..|..++++|||..|
T Consensus 374 n~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~--~RVl~la~SPdg~~i 446 (484)
T KOG0305|consen 374 NTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHT--SRVLYLALSPDGETI 446 (484)
T ss_pred EcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCc--ceeEEEEECCCCCEE
Confidence 999999888775 5678999999998877765 456789999999884 4456788886 449999999999999
Q ss_pred EEEeCCCcEEEEECCCC
Q 009597 476 MSGDGEGKCWFWDWKSC 492 (531)
Q Consensus 476 ~sgs~dg~I~iwd~~~~ 492 (531)
++|+.|.++++|++-..
T Consensus 447 ~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 447 VTGAADETLRFWNLFDE 463 (484)
T ss_pred EEecccCcEEeccccCC
Confidence 99999999999998654
No 122
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.6e-21 Score=193.53 Aligned_cols=253 Identities=20% Similarity=0.290 Sum_probs=201.7
Q ss_pred eeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEee
Q 009597 268 DKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 347 (531)
Q Consensus 268 ~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 347 (531)
....|...|-..|.||++.|+||...|.|.+|++|+.||+|+||.+.+|.|++++.....+.++.|++.+.. .+|+++
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~-~vLAvA- 461 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL-CVLAVA- 461 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc-eeEEEE-
Confidence 345667788899999999999999999999999999999999999999999999999999999999998764 233333
Q ss_pred CCCeEEEEECCCC-------------------------------------ceeEEEcccCCCeeEEEEecCCCEEEEEeC
Q 009597 348 SDKKIVQWDMNTK-------------------------------------EITQEYDQHLGAVNTITFVDSNRRFVTSSD 390 (531)
Q Consensus 348 ~dg~I~iwd~~t~-------------------------------------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~ 390 (531)
...++.|.+..-| .-++..-.|...|+.|.|+..|.+|++...
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 3333444432111 002333458889999999999999999766
Q ss_pred C---CCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEE
Q 009597 391 D---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 467 (531)
Q Consensus 391 D---g~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 467 (531)
+ ..|.|+++.......-+.. ..+.|.++.|+|...+|++++ ...|+|||+.....+..+.+. ..++..++
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg-----~kwiS~ms 614 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTG-----SKWISSMS 614 (733)
T ss_pred CCCcceEEEEecccccccCchhh-cCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcC-----Ceeeeeee
Confidence 4 4688999876654433332 567899999999999888866 567999999875544333222 35688899
Q ss_pred EcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 468 FSPDGRFVMSGDGEGKCWFWDWK-SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 468 ~spdg~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
++|.|..|+.|+.|+.++.+|+. +.++++++..|...+++|+||+ .-.+|++|+.||++.|+
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVF 677 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEE
Confidence 99999999999999999999997 4578899999999999999999 77799999999999876
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.1e-21 Score=189.24 Aligned_cols=233 Identities=18% Similarity=0.229 Sum_probs=178.7
Q ss_pred hccCCCCCCCceeeeeeccc--C--------eeeEEecCccCceEEEEEccC-CCEEEEEecCCeEEEEeCCCCcE----
Q 009597 254 EKGNAGGEKGEHVEDKSTFH--G--------KCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQV---- 318 (531)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~--~--------~~~~~l~gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~---- 318 (531)
..+.+++...+.+.+|+... . ++-.+|.||.+.=.+|+|++. .-+|++++.|++|++||+.....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 34566677777777776432 2 222389999998899999994 44799999999999999965432
Q ss_pred --EEEccCCCcc--eEEEEccCCCCCcEEEEeeCCCeEEEEECC--CCceeEEEcccCCCeeEEEEec-CCCEEEEEeCC
Q 009597 319 --IRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMN--TKEITQEYDQHLGAVNTITFVD-SNRRFVTSSDD 391 (531)
Q Consensus 319 --i~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~--t~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~D 391 (531)
...+..++.. ..+.|++. ...+|++++.|+.+.|||++ +.++.....+|.+.|+|++|+| ++..|++||.|
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~--h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D 294 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPL--HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD 294 (422)
T ss_pred ccceEEeecCCcceehhhcccc--chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC
Confidence 1222233333 34555554 44789999999999999999 5667778899999999999999 55678899999
Q ss_pred CCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC-CCCEEEEEEcCCeEEEEEcCCcce-----------eceeeeecCCcc
Q 009597 392 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQ-----------LNKKKRFAGHIV 459 (531)
Q Consensus 392 g~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~-----------~~~~~~~~~~~~ 459 (531)
++|++||+|...........|...|.+|.|+| ....|++++.|+.+.|||+..-.. ...+....||.
T Consensus 295 ~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~- 373 (422)
T KOG0264|consen 295 KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT- 373 (422)
T ss_pred CcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc-
Confidence 99999999987665555667999999999999 567889999999999999864211 12234556775
Q ss_pred ccceEEEEEcCCCCE-EEEEeCCCcEEEEECC
Q 009597 460 AGYACQVNFSPDGRF-VMSGDGEGKCWFWDWK 490 (531)
Q Consensus 460 ~~~v~~l~~spdg~~-l~sgs~dg~I~iwd~~ 490 (531)
..|+.+.|+|+..+ |++.+.|+.+.||.+.
T Consensus 374 -~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 374 -AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 44899999998765 5667899999999875
No 124
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=4e-21 Score=187.08 Aligned_cols=274 Identities=18% Similarity=0.195 Sum_probs=200.1
Q ss_pred ccCCCCCCCceeeeeecc----cCeeeEEecCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEEEccCC-Ccc
Q 009597 255 KGNAGGEKGEHVEDKSTF----HGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIP 328 (531)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~----~~~~~~~l~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~ 328 (531)
++++.|++.|.|-.|+.. ...-+..+..|+.+|.+|.|+| +-..+++.|+||+|++-|++.+.....+... ...
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~ 280 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI 280 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccce
Confidence 567889999999999973 2234677889999999999999 4568999999999999999887554444332 222
Q ss_pred eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCce-eEEEcccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCeEEE
Q 009597 329 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIK 406 (531)
Q Consensus 329 ~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~-~~~~~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~ 406 (531)
....+.+.... ..++.|..=|...+||++++.. ...+..|...|.+|+++|.. .+|+|+|.|++++|||++......
T Consensus 281 ~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 281 WFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred eeeeccccCCC-ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 33334444444 3455666666999999998754 66677799999999999955 468999999999999998643222
Q ss_pred ---EeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcC---CcceeceeeeecCCcccc--ceEEEEEcCCCCEEEEE
Q 009597 407 ---YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKKRFAGHIVAG--YACQVNFSPDGRFVMSG 478 (531)
Q Consensus 407 ---~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~---~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~sg 478 (531)
....+|...|.++.|+|.+-.|++.+.|+.|+|||.. ........ ....+.... ......|.|+..+|++|
T Consensus 360 sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~~li~vg 438 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT-IPHNNRTGRWLTPFKAAWDPDYNLIVVG 438 (498)
T ss_pred CcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce-eeccCcccccccchhheeCCCccEEEEe
Confidence 2224699999999999988789999999999999984 21111111 111111111 23446899999999999
Q ss_pred eCCCcEEEEECCCCeEEEEeeccCC-cEEE-EEEecCCCCEEEEEeCCCCEEee
Q 009597 479 DGEGKCWFWDWKSCKVFRTLKCHEG-VCIG-CEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 479 s~dg~I~iwd~~~~~~~~~~~~h~~-~V~~-v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
-.-..|-|+|-..++.+..+..... .|.+ ..|||.+..+++.++..|.|.||
T Consensus 439 ~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 439 RYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 9999999999999998887654433 3443 48999554466666678889888
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=1.8e-21 Score=190.89 Aligned_cols=242 Identities=17% Similarity=0.292 Sum_probs=196.0
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC---cEEEEcc---CCCcceEEEEccCCCCCcEEEEeeC
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMS 348 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~---~~i~~~~---~~~~~~~~~~~~~~~~~~~l~sg~~ 348 (531)
+.+++|. |..-|.++.++...+++.||+. |.|+|||+... ..+..+. .......+.+.++ ++.|++|+.
T Consensus 411 rq~~tL~-HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd---grtLivGGe 485 (705)
T KOG0639|consen 411 RQINTLA-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD---GRTLIVGGE 485 (705)
T ss_pred Hhhhhhc-cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC---CceEEeccc
Confidence 3444444 9999999999999999999995 78999999643 2333333 2333445556654 467999999
Q ss_pred CCeEEEEECCCCce--eEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCC
Q 009597 349 DKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN 426 (531)
Q Consensus 349 dg~I~iwd~~t~~~--~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 426 (531)
-.++.|||+..... ..++....-.+.+++.+||.+..+++..||.|.|||+.....++.+. +|...+.||.++++|.
T Consensus 486 astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGt 564 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGT 564 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCc
Confidence 99999999976543 33444444567789999999999999999999999999998888876 4999999999999999
Q ss_pred EEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEE
Q 009597 427 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI 506 (531)
Q Consensus 427 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 506 (531)
.|.+|+.|++|+.||++.+..+ ..|.....|.++.++|++.+|++|-.++.+.|..... .....+..|...|.
T Consensus 565 klWTGGlDntvRcWDlregrql------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVL 637 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQL------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVL 637 (705)
T ss_pred eeecCCCccceeehhhhhhhhh------hhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEE
Confidence 9999999999999999987554 3355556788899999999999999999999887554 33455667999999
Q ss_pred EEEEecCCCCEEEEEeCCCCEEee
Q 009597 507 GCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 507 ~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
++.|.+ .+.++++.|.|..+..|
T Consensus 638 SlKFa~-cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 638 SLKFAY-CGKWFVSTGKDNLLNAW 660 (705)
T ss_pred EEEecc-cCceeeecCchhhhhhc
Confidence 999999 88899999999998887
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.4e-22 Score=204.90 Aligned_cols=237 Identities=19% Similarity=0.368 Sum_probs=205.0
Q ss_pred EEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-cceEEEEccCCCCCcEEEEeeCCCeEEEEE
Q 009597 278 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWD 356 (531)
Q Consensus 278 ~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd 356 (531)
+.+-.|...|.++..-..++.+++|+.|..+-+|.+..-..+..+..+. .+.++.|.+. ..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~---E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS---ERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc---hhhhcccccCCceeeee
Confidence 4566799999999987788899999999999999988777777765443 3456666653 36899999999999999
Q ss_pred CCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCe
Q 009597 357 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 436 (531)
Q Consensus 357 ~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~ 436 (531)
+...+.++++.+|...+..+.|+|-+.++++|+.|+.+++||++...+...... |...+.++.|+|+|.|++.++.|.+
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCCceeeccCCcce
Confidence 999999999999999999999999999999999999999999998777777665 8899999999999999999999999
Q ss_pred EEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCC
Q 009597 437 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 516 (531)
Q Consensus 437 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 516 (531)
++|||+..+..+ ..|.+|. +.+..+.|+|..-++++|+.|++|++||+++.+.+.........|.++.|+| ++.
T Consensus 178 vki~d~~agk~~---~ef~~~e--~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~ 251 (825)
T KOG0267|consen 178 VKIWDLTAGKLS---KEFKSHE--GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGK 251 (825)
T ss_pred eeeecccccccc---ccccccc--ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-Cce
Confidence 999999887544 5566664 5577789999999999999999999999999999999988888999999999 666
Q ss_pred EEEEEeCC
Q 009597 517 KVATCGWD 524 (531)
Q Consensus 517 ~l~t~s~D 524 (531)
.+++|..+
T Consensus 252 ~~~~G~q~ 259 (825)
T KOG0267|consen 252 IVLSGEQI 259 (825)
T ss_pred eeecCchh
Confidence 67666543
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=179.98 Aligned_cols=241 Identities=17% Similarity=0.265 Sum_probs=182.6
Q ss_pred CccCceEEEEEcc--CCCEEEEEecCCeEEEEeCCC----------------CcEEEEccCC-CcceEEEEccCCCCCcE
Q 009597 282 GHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTET----------------GQVIRTFSTG-KIPYVVKLNPDDDKQNI 342 (531)
Q Consensus 282 gH~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t----------------~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 342 (531)
+|.+.|..+.-++ +..+.++-+..|.|+||++.. .+.+.++..+ ...+.++|++... ..
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~--g~ 226 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT--GR 226 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc--cc
Confidence 4556666665555 445677778889999999742 2234444333 3457777777443 46
Q ss_pred EEEeeCCCeEEEEECCCCcee---EEEcccCCCeeEEEEecC-CCEEEEEeCCCCEEEEEcCCCe-EEEEeeCCCCCCcc
Q 009597 343 LLAGMSDKKIVQWDMNTKEIT---QEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMP 417 (531)
Q Consensus 343 l~sg~~dg~I~iwd~~t~~~~---~~~~~h~~~I~~l~~sp~-~~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~v~ 417 (531)
|++|..-+.|++|...++.-. ..+.+|...|-.|+|+|. ...|++||.||+|+|||++.+. ........|...|.
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 899999999999999886532 345679999999999994 5679999999999999999872 22222356889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeE--
Q 009597 418 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCKV-- 494 (531)
Q Consensus 418 ~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~iwd~~~~~~-- 494 (531)
.|.|+..-.+|++|+.||+++|||++.-+.-..+..|..|. ..|++|.|+|. ...|++++.|..|.|||+....-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk--~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK--APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc--CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 99999988899999999999999999866556667788785 55999999995 56788888999999999853211
Q ss_pred --------------EEEeeccC--CcEEEEEEecCCCCEEEEEeCCCC
Q 009597 495 --------------FRTLKCHE--GVCIGCEWHPLEQSKVATCGWDGL 526 (531)
Q Consensus 495 --------------~~~~~~h~--~~V~~v~~~p~~~~~l~t~s~Dg~ 526 (531)
-+.+-.|. ..|..+.||++...+|++.+.||.
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred hhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 11223353 368899999999999999999994
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.9e-19 Score=182.96 Aligned_cols=245 Identities=18% Similarity=0.254 Sum_probs=196.9
Q ss_pred CccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcE-EEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCC
Q 009597 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 360 (531)
Q Consensus 282 gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~-i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~ 360 (531)
--..+|++++|+.+.+.||.+-.||.|-||++..+=+ ...+..+....+-.+.+. .+..|++.+.+|.|.-||+.++
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecCCceEEEEecccC
Confidence 3457899999999999999999999999999987543 344444444434333333 2356899999999999999999
Q ss_pred ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeC-CCCCCccEEEEeCCCCEEEEEEcCCeEEE
Q 009597 361 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQILI 439 (531)
Q Consensus 361 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~s~Dg~I~i 439 (531)
+....+....++|++++.+|.+..++.|++||.+.+++...++....... ...+++.+++|+|++..|++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 99999999999999999999999999999999888888877765544432 24588999999999999999999999999
Q ss_pred EEcCCcceeceeee-ecC-Cc-cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCC
Q 009597 440 YSTRERFQLNKKKR-FAG-HI-VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 516 (531)
Q Consensus 440 wd~~~~~~~~~~~~-~~~-~~-~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 516 (531)
||...+..+..... +.+ .. ....|.++.|-.++ .|++|++-|+|.+||...+.++..+..|...|.+++..+ +++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d 258 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NED 258 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CCC
Confidence 99998766542111 111 11 13446667766554 688999999999999999999999999999999999999 778
Q ss_pred EEEEEeCCCCEEee
Q 009597 517 KVATCGWDGLIKYW 530 (531)
Q Consensus 517 ~l~t~s~Dg~I~iW 530 (531)
.|+++|.|+.|..+
T Consensus 259 ~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQY 272 (691)
T ss_pred eEEEccCCCceEEE
Confidence 89999999987643
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.6e-20 Score=193.09 Aligned_cols=254 Identities=14% Similarity=0.229 Sum_probs=199.1
Q ss_pred HHHhhhhccCCCCCCCceeeeeecccC-eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcE---EEEcc
Q 009597 248 YAKKKEEKGNAGGEKGEHVEDKSTFHG-KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFS 323 (531)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~---i~~~~ 323 (531)
++..++++.+.+.+.++.|+.|..... ..-.++.-|...|.+++.. +++|++|+.+++|.+|.+..++. +..|.
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft 96 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFT 96 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeee
Confidence 445566667777788889999987665 4444454488889888874 55899999999999999877654 44443
Q ss_pred CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCe
Q 009597 324 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 403 (531)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~ 403 (531)
-+..++++.. ++.++++|+.|-.|++.++........+.+|.++|.+|.|+|++.+|++.+.||.|+|||+..+.
T Consensus 97 --lp~r~~~v~g---~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 97 --LPIRDLAVSG---SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred --ccceEEEEec---CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 2334555554 34689999999999999999999999999999999999999999999999999999999999887
Q ss_pred EEEEeeCC-------CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEE
Q 009597 404 VIKYISEP-------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 476 (531)
Q Consensus 404 ~~~~~~~~-------~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 476 (531)
..+.+..- ....+..++|+|++..|++.+.|+.|.+|+..+...... +........++.++|+|+|.|||
T Consensus 172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~---Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK---LRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee---ecccccccceEEEEEcCCCcEEe
Confidence 66554321 134567899999988899999999999999988755433 33333334488899999999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCC
Q 009597 477 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 515 (531)
Q Consensus 477 sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~ 515 (531)
+++.+|.|.|||+.+... ......|.+++|.|+.+
T Consensus 249 As~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred eeccCCcEEEEecccchh----ccccceeEEEecCCCCC
Confidence 999999999999998221 22245789999999444
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.4e-20 Score=179.98 Aligned_cols=267 Identities=15% Similarity=0.200 Sum_probs=206.8
Q ss_pred CCCCCceeeeeecc--cCeeeEEecCccCceEEEEEccCCC-EEEEEecCCeEEEEeCCCCcEEEEccC--CCcceEEEE
Q 009597 259 GGEKGEHVEDKSTF--HGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKL 333 (531)
Q Consensus 259 ~~~~~~~i~~~~~~--~~~~~~~l~gH~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~--~~~~~~~~~ 333 (531)
.++.++.++++.+. ....+..+.--..+|.+.+|.|+|. .+++++.-..++.||+++.+..+.-.. ......-.|
T Consensus 230 vaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~F 309 (514)
T KOG2055|consen 230 VAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERF 309 (514)
T ss_pred EecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhhee
Confidence 45556666665442 2234555555678999999999998 899999999999999998876544322 221222223
Q ss_pred ccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC
Q 009597 334 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 413 (531)
Q Consensus 334 ~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 413 (531)
...+ .+++|+..+..|.|.+....+++.+.+++ -.+.|..++|+.+++.|++++.+|.|.+||++...++..+.....
T Consensus 310 eVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~ 387 (514)
T KOG2055|consen 310 EVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS 387 (514)
T ss_pred EecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc
Confidence 2222 23589999999999999999999998887 458899999999999999999999999999999988888876444
Q ss_pred CCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcce---eceeeeecCCccccceEEEEEcCCCCEEEEEe--CCCcEEEEE
Q 009597 414 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWD 488 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs--~dg~I~iwd 488 (531)
-.-+++|.++++.|||+|+..|.|.|||..+... ..+++.+..- ...|+.+.|++++++|+.+| ....+++-.
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~Itsl~Fn~d~qiLAiaS~~~knalrLVH 465 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAITSLQFNHDAQILAIASRVKKNALRLVH 465 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence 4556788889999999999999999999765322 1222223222 34488899999999999887 456799999
Q ss_pred CCCCeEEEEeeccC---CcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 489 WKSCKVFRTLKCHE---GVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 489 ~~~~~~~~~~~~h~---~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+.+......+.... +.|+|++|+| ++.+|+.|-.+|.+.+|
T Consensus 466 vPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 466 VPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLF 509 (514)
T ss_pred ccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeE
Confidence 99998888886443 4689999999 78899999999999999
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=8.2e-22 Score=201.07 Aligned_cols=226 Identities=20% Similarity=0.376 Sum_probs=192.4
Q ss_pred HHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCc
Q 009597 248 YAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI 327 (531)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~ 327 (531)
+......+.+..|+.+..+-.|..-..-++..|.+|..+|.+|.|+++..+|++|+.+|+|++||++.++.++++..+..
T Consensus 34 lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~ 113 (825)
T KOG0267|consen 34 LKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL 113 (825)
T ss_pred eeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcccc
Confidence 33344456677888888888888877777888999999999999999999999999999999999999999998865443
Q ss_pred -ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 009597 328 -PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 406 (531)
Q Consensus 328 -~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 406 (531)
...+.|+|. +.+++.|+.|+.+++||++...+...+.+|...|.++.|+|+|++++++++|.+++|||+..++.+.
T Consensus 114 ~~~sv~f~P~---~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ 190 (825)
T KOG0267|consen 114 NITSVDFHPY---GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK 190 (825)
T ss_pred Ccceeeeccc---eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc
Confidence 233455554 3577899999999999999999999999999999999999999999999999999999999998887
Q ss_pred EeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC
Q 009597 407 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 482 (531)
Q Consensus 407 ~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 482 (531)
.+.. |...+.++.|+|..-+++.|+.|++|++||+++...+...... ...|.+..|+|++..+++|....
T Consensus 191 ef~~-~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 191 EFKS-HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccc-ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----cCCceeeeecCCceeeecCchhh
Confidence 7754 8899999999999999999999999999999976555433333 34578899999999999987653
No 132
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.3e-19 Score=169.06 Aligned_cols=244 Identities=13% Similarity=0.218 Sum_probs=191.8
Q ss_pred hhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCC--EEEEEecCCeEEEEeCCCCcEEEEccCCCc-ce
Q 009597 253 EEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGT--KFLTASYDKNIKYWDTETGQVIRTFSTGKI-PY 329 (531)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~--~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~ 329 (531)
.+..+++|+.+++|.+++....+.+..+..|.+.|+++.|.++-. .|++|+.||.|.+|+.....++.++..+.. +.
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT 131 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence 456788999999999999999999999999999999999999764 899999999999999999999999976543 45
Q ss_pred EEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEee
Q 009597 330 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 409 (531)
Q Consensus 330 ~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 409 (531)
.+.++|. +.+.++.+.|+.++.||+-.|+.-..+.... .-+.+.|+|.|.+|+.++.++ |-||.+........+.
T Consensus 132 ~lsiHPS---~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~ 206 (362)
T KOG0294|consen 132 DLSIHPS---GKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIE 206 (362)
T ss_pred eeEecCC---CceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhh
Confidence 5666664 3688999999999999998887655554322 223499999999999998776 9999998877666654
Q ss_pred CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEE--EcCCCCEEEEEeCCCcEEEE
Q 009597 410 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN--FSPDGRFVMSGDGEGKCWFW 487 (531)
Q Consensus 410 ~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~--~spdg~~l~sgs~dg~I~iw 487 (531)
. ...+.|+.|. ++..|++|..|+.|.+||..+.. ....+.+|... |-.+. -.|++.+|+++++||.|+||
T Consensus 207 ~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~---~~~~~~AH~~R--VK~i~~~~~~~~~~lvTaSSDG~I~vW 278 (362)
T KOG0294|consen 207 N--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDT---PLTEFLAHENR--VKDIASYTNPEHEYLVTASSDGFIKVW 278 (362)
T ss_pred c--cccceeeeec-CCceEEEecCCceEEEeccCCCc---cceeeecchhh--eeeeEEEecCCceEEEEeccCceEEEE
Confidence 3 2556677766 67789999999999999998753 34567778544 65555 35678999999999999999
Q ss_pred ECCCC-----eEEEEeeccCCcEEEEEE
Q 009597 488 DWKSC-----KVFRTLKCHEGVCIGCEW 510 (531)
Q Consensus 488 d~~~~-----~~~~~~~~h~~~V~~v~~ 510 (531)
|++.. +++..+.. ...++|+..
T Consensus 279 d~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 279 DIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred EccccccCCcceeEEeec-CCccceeee
Confidence 99865 44554443 334455543
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=3.3e-20 Score=176.70 Aligned_cols=197 Identities=20% Similarity=0.329 Sum_probs=159.2
Q ss_pred EEEccCCCCCcEEEEeeCCCeEEEEECCC----------------CceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCC
Q 009597 331 VKLNPDDDKQNILLAGMSDKKIVQWDMNT----------------KEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKS 393 (531)
Q Consensus 331 ~~~~~~~~~~~~l~sg~~dg~I~iwd~~t----------------~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~ 393 (531)
+...+.+ +..+.++-+..|.|.||++.. .+++.++.+|.+.-..|+|+| ....|++|..-+.
T Consensus 157 vr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~ 235 (440)
T KOG0302|consen 157 VRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKG 235 (440)
T ss_pred eeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccc
Confidence 3334433 235667778889999999842 346788899999999999999 3345888888889
Q ss_pred EEEEEcCCCeEEE--EeeCCCCCCccEEEEeCC-CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC
Q 009597 394 LRVWEFGIPVVIK--YISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 470 (531)
Q Consensus 394 I~iwd~~~~~~~~--~~~~~~~~~v~~v~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 470 (531)
|++|...++.-.. .-...|..+|-.++|+|. ...|++|+.||+|+|||+|.+..-..+.. +.|. +.|+.|.|+.
T Consensus 236 I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~--sDVNVISWnr 312 (440)
T KOG0302|consen 236 IHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHN--SDVNVISWNR 312 (440)
T ss_pred eEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccC--CceeeEEccC
Confidence 9999988764321 112348999999999994 67899999999999999998743333332 5553 4688899999
Q ss_pred CCCEEEEEeCCCcEEEEECCC---CeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 471 DGRFVMSGDGEGKCWFWDWKS---CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 471 dg~~l~sgs~dg~I~iwd~~~---~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
...+|++|+.||+++|||++. ++++..++-|..+|+++.|+|.+...|+++|.|..|.|||
T Consensus 313 ~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 313 REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 988999999999999999984 6788999999999999999999999999999999999998
No 134
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.85 E-value=1.2e-20 Score=185.85 Aligned_cols=202 Identities=18% Similarity=0.335 Sum_probs=153.4
Q ss_pred EecCccCceEEEEEccC-CCEEEEEecCCeEEEEeCCCCc-EEEEcc----CCCc--ceEEEEccCCCCCcEEEEeeCCC
Q 009597 279 TYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ-VIRTFS----TGKI--PYVVKLNPDDDKQNILLAGMSDK 350 (531)
Q Consensus 279 ~l~gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~-~i~~~~----~~~~--~~~~~~~~~~~~~~~l~sg~~dg 350 (531)
.-+||...++|.+|+|+ ...|+||+.||+++|||+...+ .+..|. .+.. +..|.|+++ +.+|++|+.||
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd---g~~iAagc~DG 339 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD---GKLIAAGCLDG 339 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC---cchhhhcccCC
Confidence 44699999999999996 4579999999999999997543 233332 2222 344555553 35799999999
Q ss_pred eEEEEECCCCce---eEEEcccCC--CeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEee--CCCCCCccEEEEeC
Q 009597 351 KIVQWDMNTKEI---TQEYDQHLG--AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHP 423 (531)
Q Consensus 351 ~I~iwd~~t~~~---~~~~~~h~~--~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~~~~v~~v~~sp 423 (531)
.|.+|+..+... ...-..|.. .|+||.|+++|++|++-+.|+++++||++..+...... .+.....+.++|+|
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence 999999855432 333467877 99999999999999999999999999999865433222 23456778999999
Q ss_pred CCCEEEEEEc------CCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009597 424 NTNWLAAQSL------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 488 (531)
Q Consensus 424 ~~~~l~s~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd 488 (531)
+.++|++|+. .|++.+||..+...+..+..- ...|..+.|+|.-+.|++|+.||.++||-
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-----~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-----TASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCC-----CceEEEEeecchhhheeeecCCCceEEEE
Confidence 9999999874 478999998876554333222 33477799999999999999999999873
No 135
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=8.5e-20 Score=177.39 Aligned_cols=240 Identities=15% Similarity=0.228 Sum_probs=178.7
Q ss_pred eEEEEEcc-------CCCEEEEEecCCeEEEEeCCCCcEE---EEc-----------------cCCCcceEEEEccCCCC
Q 009597 287 VRDISFCN-------DGTKFLTASYDKNIKYWDTETGQVI---RTF-----------------STGKIPYVVKLNPDDDK 339 (531)
Q Consensus 287 V~~l~fsp-------dg~~l~s~s~Dg~I~vWd~~t~~~i---~~~-----------------~~~~~~~~~~~~~~~~~ 339 (531)
-.|+.|.. -|+++|.|..|..|.|||+.-...+ .++ ..+|...++.+.+....
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 2679999999999999998532111 000 11333344555555566
Q ss_pred CcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccE
Q 009597 340 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 418 (531)
Q Consensus 340 ~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~ 418 (531)
.++|++|+.|.+|++||+.++++..++..|.+.|.++.|+| ....|++|+.|++|.+.|.+.+......- ...+.|-.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEk 334 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEK 334 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEE
Confidence 78999999999999999999999999999999999999999 45689999999999999999643221111 14678999
Q ss_pred EEEeC-CCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--E
Q 009597 419 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCK--V 494 (531)
Q Consensus 419 v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~iwd~~~~~--~ 494 (531)
++|+| ....+++++.||+|+-+|+|... ..+.....| ...|.++++++. -.+|++++.|+.|.+|++..-. .
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AH--d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAH--DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEec--cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence 99999 46778888999999999999863 233445555 456888999875 4578889999999999986433 2
Q ss_pred EEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 495 FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 495 ~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+..-...-+...|.++.|....+++.||..+.++|||
T Consensus 411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 411 VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccccccceeecccCCCcceEEEecCccceEEEee
Confidence 2221111234567788887777899999999999997
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=1.7e-18 Score=170.48 Aligned_cols=270 Identities=17% Similarity=0.261 Sum_probs=205.5
Q ss_pred HHHHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEc
Q 009597 243 KYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 322 (531)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~ 322 (531)
+.+.++...+++. ..+|+.++.+.+|+....+..+....|.+.|.+++.-.+|. |+||+.|+.|..|| ..-+.++..
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRET 323 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccccccc
Confidence 4444455544444 34678899999999988888888889999999999999997 67799999999999 444445444
Q ss_pred cCCCcc-eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC
Q 009597 323 STGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 401 (531)
Q Consensus 323 ~~~~~~-~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~ 401 (531)
...... .+-.+..... . |++|...+.|..=.++.+- .....+|....+.++.+|+...|++++.|+.+++|+ .
T Consensus 324 elPe~~G~iRtv~e~~~--d-i~vGTtrN~iL~Gt~~~~f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~ 397 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKG--D-ILVGTTRNFILQGTLENGF-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D 397 (626)
T ss_pred cCchhcCCeeEEecCCC--c-EEEeeccceEEEeeecCCc-eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C
Confidence 433322 2222333222 2 7888888888777776554 334557889999999999999999999999999999 2
Q ss_pred CeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC
Q 009597 402 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 481 (531)
Q Consensus 402 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 481 (531)
.+.+.... -..++.|+.|+|.| .++.|+..|...+.|..+...+. + |.....+.++.|+|+|.+||.|+.|
T Consensus 398 ~k~~wt~~--~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~-----~~d~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 398 HKLEWTKI--IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-I-----HTDNEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred CceeEEEE--ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-E-----EecCCceEEEEEcCCCCEEEEecCC
Confidence 22222221 35678999999999 99999999999999998843332 2 2224558889999999999999999
Q ss_pred CcEEEEECCC-CeEEEEee-ccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 482 GKCWFWDWKS-CKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 482 g~I~iwd~~~-~~~~~~~~-~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+.|+||-+.. +..+.... .|..+|+.+.|++ ++++|.+-+-|-.|.+|.
T Consensus 469 ~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 469 NHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEc
Confidence 9999998864 44444443 4457999999999 889999999999999984
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=5.3e-18 Score=168.15 Aligned_cols=251 Identities=17% Similarity=0.180 Sum_probs=184.2
Q ss_pred HhhhhccC-CCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEE-EecCCeEEEEeCCCCcEEEEccCCCc
Q 009597 250 KKKEEKGN-AGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKNIKYWDTETGQVIRTFSTGKI 327 (531)
Q Consensus 250 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s-~s~Dg~I~vWd~~t~~~i~~~~~~~~ 327 (531)
..+++..+ +.+..++.+.+|+..+++.+..+..|.. +..++|+|+++.+++ ++.|+.|++||+.+++.+..+..+..
T Consensus 38 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 116 (300)
T TIGR03866 38 LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE 116 (300)
T ss_pred ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC
Confidence 34444433 4556678899999988888888876654 578999999987754 45689999999999888888866555
Q ss_pred ceEEEEccCCCCCcEEEEeeCCC-eEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEE-eCCCCEEEEEcCCCeEE
Q 009597 328 PYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS-SDDKSLRVWEFGIPVVI 405 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~dg-~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~-s~Dg~I~iwd~~~~~~~ 405 (531)
+..+.+.++. .+++++..++ .+.+||..+++.+..+.. ...+.++.|+|++++|+++ ..++.|++||+.+++.+
T Consensus 117 ~~~~~~~~dg---~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 117 PEGMAVSPDG---KIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred cceEEECCCC---CEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee
Confidence 6666676643 5677776654 577889988877665543 2456789999999988654 46899999999998776
Q ss_pred EEeeCC----C--CCCccEEEEeCCCCEEEEE-EcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE
Q 009597 406 KYISEP----H--MHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 478 (531)
Q Consensus 406 ~~~~~~----~--~~~v~~v~~sp~~~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 478 (531)
..+... + ......++|+|++++++++ +.++.|.+||+.+....... ..+ ..+.+++|+|+|++|+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~----~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL--LVG----QRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE--EeC----CCcceEEECCCCCEEEEE
Confidence 655321 1 1123568899999986554 55678999999876544221 112 347789999999999887
Q ss_pred e-CCCcEEEEECCCCeEEEEeeccCCcEEEEEEec
Q 009597 479 D-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 479 s-~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p 512 (531)
+ .+|.|++||+.+++++..++.. .....++++|
T Consensus 267 ~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 267 NGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 4 6899999999999999999865 4458888765
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.7e-19 Score=172.95 Aligned_cols=239 Identities=18% Similarity=0.316 Sum_probs=179.3
Q ss_pred eEEEEEccCCCEEEEEecCC---e--EEEEeCCCCc--EEEEccCCCcceEEEEcc----CCCCCcEEEEeeCCCeEEEE
Q 009597 287 VRDISFCNDGTKFLTASYDK---N--IKYWDTETGQ--VIRTFSTGKIPYVVKLNP----DDDKQNILLAGMSDKKIVQW 355 (531)
Q Consensus 287 V~~l~fspdg~~l~s~s~Dg---~--I~vWd~~t~~--~i~~~~~~~~~~~~~~~~----~~~~~~~l~sg~~dg~I~iw 355 (531)
.-.+..-|+.++++++-.+. . |+||+-.... +.+.+-....+.|+.+.- ....+++++.|+.+..|.||
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 44566777667666664432 3 4455433211 222233334445554433 34457899999999999999
Q ss_pred ECCCCc---eeEE------------------EcccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC
Q 009597 356 DMNTKE---ITQE------------------YDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 413 (531)
Q Consensus 356 d~~t~~---~~~~------------------~~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 413 (531)
|+.-.. +... -.+|..+|..+.|+..- +.|++||.|.+|++||+.++++...+. .|.
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~ 286 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHG 286 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcC
Confidence 984221 1111 23688899999998744 568999999999999999999988876 489
Q ss_pred CCccEEEEeC-CCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 009597 414 HSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 414 ~~v~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~ 491 (531)
..|.++.|+| .+.+|++|+.|++|.++|+|........-.+. +.|-.++|.|.. ..++++..||+|+-+|+|.
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-----g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-----GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-----cceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence 9999999999 67899999999999999999643333333333 446679999864 4567788999999999996
Q ss_pred C-eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 492 C-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 492 ~-~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
. +++.++++|.+.|.+++++++...+|+|+|.|+.|++|+
T Consensus 362 ~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 362 PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 4 999999999999999999998889999999999999996
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=8.9e-19 Score=162.05 Aligned_cols=209 Identities=17% Similarity=0.262 Sum_probs=160.4
Q ss_pred cCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCCCc----------EEEEc----cCCCcceEEEEccCCCCCcEEEE
Q 009597 281 MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQ----------VIRTF----STGKIPYVVKLNPDDDKQNILLA 345 (531)
Q Consensus 281 ~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~----------~i~~~----~~~~~~~~~~~~~~~~~~~~l~s 345 (531)
..|.+.|.++...+ .|+++++|+.||.|.|||++... .+..+ ..+|.-.+....+.+-+..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999988 59999999999999999997533 11111 12222233333444444478999
Q ss_pred eeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecC---CCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEe
Q 009597 346 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 422 (531)
Q Consensus 346 g~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~---~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~s 422 (531)
++.|.++++||.++.+....|+ -.+.|.+-+++|- ..++++|..|-.|++-|+.++...+.+. +|...|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEec
Confidence 9999999999999988887776 4477888888883 4467788888899999999998887775 599999999999
Q ss_pred CCCCE-EEEEEcCCeEEEEEcCCc-ceece-----------eeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009597 423 PNTNW-LAAQSLDNQILIYSTRER-FQLNK-----------KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 489 (531)
Q Consensus 423 p~~~~-l~s~s~Dg~I~iwd~~~~-~~~~~-----------~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 489 (531)
|...+ |++|+.||.|++||++.. .++.. .+.-..| .+.+..++|+.++.++++.+.|..+++|+.
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah--~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH--YGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc--cceeeeeeecccchhhhhccCccceEEeec
Confidence 96655 678999999999999753 12111 1111222 467889999999999999999999999998
Q ss_pred CCCe
Q 009597 490 KSCK 493 (531)
Q Consensus 490 ~~~~ 493 (531)
.+|+
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 7765
No 140
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=5.9e-19 Score=179.65 Aligned_cols=265 Identities=17% Similarity=0.188 Sum_probs=200.8
Q ss_pred CceeeeeecccCeee---EEecCccCceEEEEEccC-----------CCEEEEEecCCeEEEEeCCCCc---EEEE----
Q 009597 263 GEHVEDKSTFHGKCM---RTYMGHSKAVRDISFCND-----------GTKFLTASYDKNIKYWDTETGQ---VIRT---- 321 (531)
Q Consensus 263 ~~~i~~~~~~~~~~~---~~l~gH~~~V~~l~fspd-----------g~~l~s~s~Dg~I~vWd~~t~~---~i~~---- 321 (531)
+-.+++|+......+ ..+.-|+..|+++.--|- ...|+||+.|++|++|+++.+. ..+.
T Consensus 345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence 456788887643322 334459999999886661 1358999999999999987532 1110
Q ss_pred -------------------------------ccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccC
Q 009597 322 -------------------------------FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL 370 (531)
Q Consensus 322 -------------------------------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~ 370 (531)
+.......+++++++ +..|++|..-|.|+||++...+....+..|.
T Consensus 425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~---gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe 501 (1080)
T KOG1408|consen 425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD---GQHLASGDRGGNLRVYDLQELEYTCFMEAHE 501 (1080)
T ss_pred hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC---cceecccCccCceEEEEehhhhhhhheeccc
Confidence 001122345556654 4679999999999999999999999999999
Q ss_pred CCeeEEEEec---CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCC--CEEEEEEcCCeEEEEEcCCc
Q 009597 371 GAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT--NWLAAQSLDNQILIYSTRER 445 (531)
Q Consensus 371 ~~I~~l~~sp---~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~s~s~Dg~I~iwd~~~~ 445 (531)
..|.|+.|+. ..++|++++.|..|.|||+...-.+......|...|+++.|.-+| ..+++++.|..|.+=-.+..
T Consensus 502 sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~ 581 (1080)
T KOG1408|consen 502 SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA 581 (1080)
T ss_pred ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc
Confidence 9999999985 457899999999999999987766555556799999999999877 77889999987765333211
Q ss_pred ceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec---cCCcEEEEEEecCCCCEEEEEe
Q 009597 446 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 446 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~v~~~p~~~~~l~t~s 522 (531)
.................+..++..|..+++++++.|.+|+|||+.+++..+.|++ |.+....+...| .+.+|+|..
T Consensus 582 ~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atSc 660 (1080)
T KOG1408|consen 582 SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSC 660 (1080)
T ss_pred cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEee
Confidence 1111111111111234577899999999999999999999999999999999974 667889999999 888999999
Q ss_pred CCCCEEeeC
Q 009597 523 WDGLIKYWD 531 (531)
Q Consensus 523 ~Dg~I~iWD 531 (531)
.|.+|.++|
T Consensus 661 sdktl~~~D 669 (1080)
T KOG1408|consen 661 SDKTLCFVD 669 (1080)
T ss_pred cCCceEEEE
Confidence 999999987
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=4.4e-19 Score=174.10 Aligned_cols=256 Identities=16% Similarity=0.237 Sum_probs=192.2
Q ss_pred HHHHhhhh-ccCCCCCCCceeeeeeccc----CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE
Q 009597 247 EYAKKKEE-KGNAGGEKGEHVEDKSTFH----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 321 (531)
Q Consensus 247 ~~~~~~~~-~~~~~~~~~~~i~~~~~~~----~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~ 321 (531)
.+.|.... ...+....+..+.+|.... -..++.+.|. .-.|++......++++|+..+.|+|||++...+++.
T Consensus 39 s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~ 116 (673)
T KOG4378|consen 39 SFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF 116 (673)
T ss_pred eeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh
Confidence 34454444 2344445556666665322 1234444444 345555555558999999999999999995555555
Q ss_pred ccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccC-CCeeEEEEecCCCE-EEEEeCCCCEEEEEc
Q 009597 322 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVNTITFVDSNRR-FVTSSDDKSLRVWEF 399 (531)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~-~~I~~l~~sp~~~~-l~s~s~Dg~I~iwd~ 399 (531)
+. .+...+..+..... ..+|++++..|.|.|..+.++....+|.... ..|.-+.|++..+. |.+++++|.|.+||+
T Consensus 117 lk-dh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 117 LK-DHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred cc-CCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 54 44444444443332 3689999999999999999998888886553 45668999997765 667899999999999
Q ss_pred CCCeEEEEeeCCCCCCccEEEEeC-CCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE
Q 009597 400 GIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 478 (531)
Q Consensus 400 ~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 478 (531)
....++......|..+...|+|+| +..+|++.+.|..|.+||++......++. + ......++|+++|.+|++|
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y-----~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-Y-----SHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-e-----cCCcceeeecCCceEEEee
Confidence 998888888888999999999999 67788999999999999999764443222 1 2335669999999999999
Q ss_pred eCCCcEEEEECCC-CeEEEEeeccCCcEEEEEEec
Q 009597 479 DGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 479 s~dg~I~iwd~~~-~~~~~~~~~h~~~V~~v~~~p 512 (531)
...|.|..||++. ..++..+.+|...|++++|-|
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 9999999999995 567888899999999999998
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=171.50 Aligned_cols=251 Identities=15% Similarity=0.219 Sum_probs=199.8
Q ss_pred cCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 273 ~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
+.....+..||......++.+|+...|+||+.|+.++||+ ..+++.+........+..|+|.+ .++.|...|..
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg----~va~Gt~~G~w 430 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG----VVAVGTATGRW 430 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc----eEEEeeccceE
Confidence 3445556678999999999999999999999999999999 66777777778888888888864 69999999999
Q ss_pred EEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC-eEEEEeeCCCCCCccEEEEeCCCCEEEEE
Q 009597 353 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQ 431 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 431 (531)
.+.|.++...+..-.. ..+++++.|+|+|.+|+.|+.|+.|+||-+... .........+..+|+.+.|++++++|.+.
T Consensus 431 ~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 9999999777666555 899999999999999999999999999998654 34444444455899999999999999999
Q ss_pred EcCCeEEEEEcCCcceeceeeee-------------cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEE
Q 009597 432 SLDNQILIYSTRERFQLNKKKRF-------------AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---CKVF 495 (531)
Q Consensus 432 s~Dg~I~iwd~~~~~~~~~~~~~-------------~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~---~~~~ 495 (531)
+-|-.|..|...........+.. .+......+..++-+.+.+++++|...|+|++|...- ....
T Consensus 510 S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~ 589 (626)
T KOG2106|consen 510 SGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS 589 (626)
T ss_pred cCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc
Confidence 99999999954332222111110 0111123344456677889999999999999998653 3456
Q ss_pred EEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 496 RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 496 ~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
..+.+|.+.|.+++|.- +...|++.+.|.+|..|+
T Consensus 590 he~~ghs~~vt~V~Fl~-~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 590 HEYGGHSSHVTNVAFLC-KDSHLISTGKDTSIMQWR 624 (626)
T ss_pred eeeccccceeEEEEEee-CCceEEecCCCceEEEEE
Confidence 77889999999999998 666777777999999995
No 143
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=4e-18 Score=173.66 Aligned_cols=276 Identities=20% Similarity=0.338 Sum_probs=206.8
Q ss_pred HHHHHHhhh---hccCCCCCCCceeeeeecccCe---------------------ee----------EEecCccCceEEE
Q 009597 245 AEEYAKKKE---EKGNAGGEKGEHVEDKSTFHGK---------------------CM----------RTYMGHSKAVRDI 290 (531)
Q Consensus 245 ~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~---------------------~~----------~~l~gH~~~V~~l 290 (531)
+..++.... ...++++++|..|++|...-+. +. ..++||..-|.++
T Consensus 194 Irsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv 273 (764)
T KOG1063|consen 194 IRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSV 273 (764)
T ss_pred hhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEE
Confidence 444444433 4467899999999999764332 11 2345999999999
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCC--cEEEEccCCCcc------eEEEEccCCCCCcEEEEeeCCCeEEEEECCCC--
Q 009597 291 SFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTGKIP------YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-- 360 (531)
Q Consensus 291 ~fspdg~~l~s~s~Dg~I~vWd~~t~--~~i~~~~~~~~~------~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~-- 360 (531)
.|+|.+..|+++|.|.++.+|...+. --+.....+... +...|+++ .+.+++-+..|-.++|.....
T Consensus 274 ~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n---~~~ii~~g~~Gg~hlWkt~d~~~ 350 (764)
T KOG1063|consen 274 WWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN---SNVIIAHGRTGGFHLWKTKDKTF 350 (764)
T ss_pred EEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC---CCEEEEecccCcEEEEeccCccc
Confidence 99999989999999999999976543 333333333222 33344443 378999999999999983322
Q ss_pred -ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcC---------------------------------------
Q 009597 361 -EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG--------------------------------------- 400 (531)
Q Consensus 361 -~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~--------------------------------------- 400 (531)
.....+.+|.+.|..|+|.|.|.+|++.|.|-+-|+|---
T Consensus 351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccccee
Confidence 2344568999999999999999999999999888875320
Q ss_pred --------------------------------------------------CCeE----E---------------------
Q 009597 401 --------------------------------------------------IPVV----I--------------------- 405 (531)
Q Consensus 401 --------------------------------------------------~~~~----~--------------------- 405 (531)
++.. .
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 0000 0
Q ss_pred --------EEeeCCCCCCccEEEEeCCCCEEEEEEcCC-----eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCC
Q 009597 406 --------KYISEPHMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 472 (531)
Q Consensus 406 --------~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 472 (531)
+.+ .+|...|.+++.+|+++++++++... .|++|+..+.... +.+.+|... |+.++|||||
T Consensus 511 ~~tLwPEv~KL-YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~---~~L~~HsLT--VT~l~FSpdg 584 (764)
T KOG1063|consen 511 QNTLWPEVHKL-YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV---QELEGHSLT--VTRLAFSPDG 584 (764)
T ss_pred HhccchhhHHh-ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh---heecccceE--EEEEEECCCC
Confidence 000 12666799999999999999988654 6999998876443 467788654 9999999999
Q ss_pred CEEEEEeCCCcEEEEECCCC----eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 473 RFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 473 ~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+||++.+.|+++.+|..... ......+.|...|.++.|+| ++.+++|+|.|.+|++|
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVW 645 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEE
Confidence 99999999999999986532 22344789999999999999 77789999999999999
No 144
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.7e-19 Score=168.75 Aligned_cols=274 Identities=16% Similarity=0.188 Sum_probs=195.1
Q ss_pred ccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEcc--CCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc--eE
Q 009597 255 KGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YV 330 (531)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~--~~ 330 (531)
..++.+...+.+++++..+++.+..|++|...+..+.|.. ....+.+|+.||+|++||+++......+.....+ ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5567778888999999999999999999999999999987 4567899999999999999987776666544333 33
Q ss_pred EEEccCCCCCcEEEEee----CCCeEEEEECCCCce-eEEE-cccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCe
Q 009597 331 VKLNPDDDKQNILLAGM----SDKKIVQWDMNTKEI-TQEY-DQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPV 403 (531)
Q Consensus 331 ~~~~~~~~~~~~l~sg~----~dg~I~iwd~~t~~~-~~~~-~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~ 403 (531)
+++.... +.+++++|. .+-.|.+||++..+. +..+ ..|.+.|++|.|+| +.++|++||.||.|.|||+....
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 3333322 346777774 467899999998765 5544 67999999999999 55789999999999999998763
Q ss_pred EEEEee--CCCCCCccEEEEeCCC-CEEEEEEcCCeEEEEEcCCcceeceeeee-------cCCccccceEEEEEcCCCC
Q 009597 404 VIKYIS--EPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRF-------AGHIVAGYACQVNFSPDGR 473 (531)
Q Consensus 404 ~~~~~~--~~~~~~v~~v~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~l~~spdg~ 473 (531)
.-..+. ..+..+|.++.|+..+ +.|.+-+...+..+|++..+......... .......++...-...++.
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 211111 1266789999999876 45888899999999999876533222111 0011122332222222444
Q ss_pred EEEEEeC-CCcEEEEECC---C---CeEEEEeec-cCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 474 FVMSGDG-EGKCWFWDWK---S---CKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 474 ~l~sgs~-dg~I~iwd~~---~---~~~~~~~~~-h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.++.++. -+...++-+. + .+.+..+.+ |...|.++.|.. .+.++.|||.||.+.+|
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAW 343 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEE
Confidence 5544443 5565555433 2 344566665 667788888886 77899999999999999
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.2e-18 Score=172.06 Aligned_cols=270 Identities=13% Similarity=0.170 Sum_probs=210.3
Q ss_pred HHHHhhhhccCCCCCCCceeeeeecccCee-eEEecCcc-CceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC
Q 009597 247 EYAKKKEEKGNAGGEKGEHVEDKSTFHGKC-MRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 324 (531)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~gH~-~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 324 (531)
+++.+.+.+.+|-+..++.|++|...+.-+ ...+.||. ..|.+|+|++.+ +|.|.+.+|.|.-||+.+++.+..+..
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecC
Confidence 444555556678888999999999887644 35566664 589999999555 689999999999999999998888754
Q ss_pred -CCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeE--EEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC
Q 009597 325 -GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 401 (531)
Q Consensus 325 -~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~--~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~ 401 (531)
+...+.++.++.. ..++.|+.||.+..+++..+.+.. .+....+.|.++.|+|++..+++|+.||.|++||..+
T Consensus 109 ~gg~IWsiai~p~~---~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 109 NGGAIWSIAINPEN---TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred CCcceeEEEeCCcc---ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 4556788888765 469999999988888888776654 3455678999999999999999999999999999999
Q ss_pred CeEEEEeeC-------CCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCE
Q 009597 402 PVVIKYISE-------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 474 (531)
Q Consensus 402 ~~~~~~~~~-------~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 474 (531)
+.....+.. ....-|.++.+-. ...|++|..-|+|.+||...+..+.. +..|. ..|.+++..+++.+
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS---~~~h~--adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQS---HSCHD--ADVLALAVADNEDR 259 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhh---hhhhh--cceeEEEEcCCCCe
Confidence 877663221 1122356666664 45689999999999999998866643 34443 44888999999999
Q ss_pred EEEEeCCCcEEEEECCCCeE----EEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 475 VMSGDGEGKCWFWDWKSCKV----FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 475 l~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
+++++.|+.|.-+...+.+. ......|...|.+++..+ ..+++||.|..+.+
T Consensus 260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAI 315 (691)
T ss_pred EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEE
Confidence 99999999999888765533 233346778899999987 38999999988765
No 146
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=1.1e-17 Score=170.50 Aligned_cols=266 Identities=17% Similarity=0.239 Sum_probs=191.8
Q ss_pred CCCceeeeeecccCeeeEEecCccCceEEEEEccCCC---EEEEEecCCeEEEEeCCCCcE--EEEccCCCcceEEEEcc
Q 009597 261 EKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGT---KFLTASYDKNIKYWDTETGQV--IRTFSTGKIPYVVKLNP 335 (531)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~---~l~s~s~Dg~I~vWd~~t~~~--i~~~~~~~~~~~~~~~~ 335 (531)
+.+..|.+++......+.++.||..+|+|+.|-|+.. ++++|+.|++|++|.++.... +..+.. +...++++..
T Consensus 31 Ga~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a 109 (764)
T KOG1063|consen 31 GAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVA 109 (764)
T ss_pred cCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEe
Confidence 4455678888888888899999999999999999876 799999999999999984433 334433 3333333322
Q ss_pred CC---------------------------------------------CCCcEEEEeeCCCeEEEEECCC--CceeEEEcc
Q 009597 336 DD---------------------------------------------DKQNILLAGMSDKKIVQWDMNT--KEITQEYDQ 368 (531)
Q Consensus 336 ~~---------------------------------------------~~~~~l~sg~~dg~I~iwd~~t--~~~~~~~~~ 368 (531)
.. .+..+++.|+.+..|.++.-.+ ...+.++.+
T Consensus 110 ~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~G 189 (764)
T KOG1063|consen 110 RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEG 189 (764)
T ss_pred eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeec
Confidence 11 1112334444444444443322 134567789
Q ss_pred cCCCeeEEEEecCCC---EEEEEeCCCCEEEEEcCCCe------------------------EEE------EeeCCCCCC
Q 009597 369 HLGAVNTITFVDSNR---RFVTSSDDKSLRVWEFGIPV------------------------VIK------YISEPHMHS 415 (531)
Q Consensus 369 h~~~I~~l~~sp~~~---~l~s~s~Dg~I~iwd~~~~~------------------------~~~------~~~~~~~~~ 415 (531)
|.+.|.+|+|...+. +|+++|.|..||||.+.... .+. .+..+|...
T Consensus 190 H~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDW 269 (764)
T KOG1063|consen 190 HTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDW 269 (764)
T ss_pred cchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccc
Confidence 999999999987544 78999999999999864221 111 122368999
Q ss_pred ccEEEEeCCCCEEEEEEcCCeEEEEEcCCccee----ceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009597 416 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQL----NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 416 v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 491 (531)
|.++.|+|.+..|++++.|.++.+|.-....-+ .++....|. ++......|+|++..+++-+..|-.++|-.+.
T Consensus 270 V~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~--a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 270 VYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGS--AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred eEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccc--ccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 999999999999999999999999987654222 222222222 23355678999999999999999999998332
Q ss_pred ---CeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 492 ---CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 492 ---~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
..+...+.+|.+.|.+++|+| .+.+|++.|.|-+-|+|
T Consensus 348 ~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 348 KTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLF 388 (764)
T ss_pred ccceeeccccccccccceeeeecC-CCCEEEEeccccceeee
Confidence 344555679999999999999 88899999999998886
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=1.9e-18 Score=162.21 Aligned_cols=252 Identities=17% Similarity=0.343 Sum_probs=186.3
Q ss_pred eeeEEec--CccCceEEEEEccC----CCEEEEEecCCeEEEEeCCCCcEEEEccC-CCcceEEEEccCCCCCcEEEEee
Q 009597 275 KCMRTYM--GHSKAVRDISFCND----GTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGM 347 (531)
Q Consensus 275 ~~~~~l~--gH~~~V~~l~fspd----g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~ 347 (531)
+.+..+. .|......++|+-+ ..+||.|+.-|.|+|.|+.++++...+.. +.....+.++|. +.+++++++
T Consensus 78 r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~--~~qlvls~S 155 (385)
T KOG1034|consen 78 RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD--RPQLVLSAS 155 (385)
T ss_pred eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCC--CCcEEEEec
Confidence 4444443 37778888888764 34788999999999999999999887743 344455666665 448999999
Q ss_pred CCCeEEEEECCCCceeEEE---cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEE-----------------
Q 009597 348 SDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY----------------- 407 (531)
Q Consensus 348 ~dg~I~iwd~~t~~~~~~~---~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~----------------- 407 (531)
.|..|++|++++..++..+ .+|.+.|.++.|+.++.+|++++.|.+|++|++..++....
T Consensus 156 kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfp 235 (385)
T KOG1034|consen 156 KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFP 235 (385)
T ss_pred CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCC
Confidence 9999999999999998887 67999999999999999999999999999999974321111
Q ss_pred ----------eeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcC-Ccceec----------eeeeecCCccccceEEE
Q 009597 408 ----------ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLN----------KKKRFAGHIVAGYACQV 466 (531)
Q Consensus 408 ----------~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~-~~~~~~----------~~~~~~~~~~~~~v~~l 466 (531)
...-|...|-|+.|- |+++++-+-++.|..|... -...+. .+..+.-.....+....
T Consensus 236 t~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 236 TPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred ccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence 111244455555554 6889999999999999872 221111 11222222222333446
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEeec--cCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 467 NFSPDGRFVMSGDGEGKCWFWDWKSCKVF--RTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 467 ~~spdg~~l~sgs~dg~I~iwd~~~~~~~--~~~~~--h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+|.|-++.|+.|...|.|++||++...+. .++.. ....|...+|+. ++.+|+....|++|.-||
T Consensus 314 ~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWD 381 (385)
T ss_pred eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEE
Confidence 67788999999999999999999976652 22222 234788999999 888899999999999987
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.1e-19 Score=191.26 Aligned_cols=242 Identities=20% Similarity=0.347 Sum_probs=188.0
Q ss_pred cCceEEEEEccCCCE----EEEEecCCeEEEEeCCC---Cc---EEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEE
Q 009597 284 SKAVRDISFCNDGTK----FLTASYDKNIKYWDTET---GQ---VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIV 353 (531)
Q Consensus 284 ~~~V~~l~fspdg~~----l~s~s~Dg~I~vWd~~t---~~---~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~ 353 (531)
...-..|+|.+.|.. |+.|..||.|.+||... +. .+.++. .|...+..+.+....+++|++|+.+|.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCcEE
Confidence 456889999987665 88899999999999865 22 233332 23333333444445568999999999999
Q ss_pred EEECCCCceeEEE--cccCCCeeEEEEecC-CCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC-CCccEEEEeCCC-CEE
Q 009597 354 QWDMNTKEITQEY--DQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-HSMPSISLHPNT-NWL 428 (531)
Q Consensus 354 iwd~~t~~~~~~~--~~h~~~I~~l~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~v~~v~~sp~~-~~l 428 (531)
|||+...+.-..+ ....+.|.+++|+.. .+.|++++.+|.+.|||++..+.+..+..... ..+..++|||+. ..|
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 9999875544443 224578999999874 45688999999999999999877766654222 347789999964 456
Q ss_pred EEEEcCC---eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeeccCCc
Q 009597 429 AAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504 (531)
Q Consensus 429 ~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 504 (531)
++++.|. .|.+||+|... ...+.+.+|..+ |.++.|++.+ .+|++++.|+.|.+|+..+++.+..+......
T Consensus 223 ~~As~dd~~PviqlWDlR~as--sP~k~~~~H~~G--ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW 298 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFAS--SPLKILEGHQRG--ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNW 298 (1049)
T ss_pred eeecCCCCCceeEeecccccC--Cchhhhcccccc--eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcc
Confidence 6666553 79999998643 345667788644 8889999966 89999999999999999999999999988889
Q ss_pred EEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 505 CIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 505 V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+..+.|.|.+...++.++.||.|-|+
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeee
Confidence 99999999888899999999999886
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=5.1e-18 Score=158.99 Aligned_cols=238 Identities=20% Similarity=0.369 Sum_probs=178.0
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEeCCCC--------------cEEEEccCCCcceEEEEc----cCCCCCcEEEEeeC
Q 009597 287 VRDISFCNDGTKFLTASYDKNIKYWDTETG--------------QVIRTFSTGKIPYVVKLN----PDDDKQNILLAGMS 348 (531)
Q Consensus 287 V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~--------------~~i~~~~~~~~~~~~~~~----~~~~~~~~l~sg~~ 348 (531)
...+.|+|||..|++-+.|..+++|++... .....+..+..++..++. ...+..+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456889999999999999999999987421 111222234444444443 23455689999999
Q ss_pred CCeEEEEECCCCceeEEEcc--cCC---CeeEEEEecCCCEEEEEeCCCCEEEEEc-CCCeEEEEe------eCCCCCCc
Q 009597 349 DKKIVQWDMNTKEITQEYDQ--HLG---AVNTITFVDSNRRFVTSSDDKSLRVWEF-GIPVVIKYI------SEPHMHSM 416 (531)
Q Consensus 349 dg~I~iwd~~t~~~~~~~~~--h~~---~I~~l~~sp~~~~l~s~s~Dg~I~iwd~-~~~~~~~~~------~~~~~~~v 416 (531)
+.-|++||.-+|+....+.. |.. +..+++|+|||..|++|. ...|+++|+ +.+...... ..+..+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998887754 333 446899999999988765 678999999 444322111 11235678
Q ss_pred cEEEEeC-CCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Ce
Q 009597 417 PSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKS-CK 493 (531)
Q Consensus 417 ~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~-~~ 493 (531)
.+++|+| +.+.+++++....+-||.-..+..+ ..+.+| .+.|+.++|.++|+.|.+|. .+-.|..||++. ..
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl---~llggh--~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL---QLLGGH--GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCce---eeeccc--CCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 8999999 5669999999999999987776544 445567 46699999999999999998 467899999985 56
Q ss_pred EEEEeeccCC-cEEE--EEEecCCCCEEEEEeCCCCEEeeC
Q 009597 494 VFRTLKCHEG-VCIG--CEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 494 ~~~~~~~h~~-~V~~--v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
++..+..|.+ .-.. ....| .+.+|++|+.||.|++||
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWD 325 (406)
T ss_pred hhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEe
Confidence 6777777765 3233 34456 778999999999999998
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.2e-18 Score=174.70 Aligned_cols=271 Identities=18% Similarity=0.278 Sum_probs=202.4
Q ss_pred HHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCE-EEEEecCCeEEEEeCCCCcE---------
Q 009597 249 AKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTK-FLTASYDKNIKYWDTETGQV--------- 318 (531)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~-l~s~s~Dg~I~vWd~~t~~~--------- 318 (531)
...+.+..+++|+.+|++++|.+.+|+|++++. -.+.|.||+|+|.+.. ++.+.....+.|-+..-|..
T Consensus 407 Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~el 485 (733)
T KOG0650|consen 407 SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKEL 485 (733)
T ss_pred EecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhh
Confidence 345566678899999999999999999999987 4458999999997543 33344444566655432211
Q ss_pred E-----------------------------EEccCCCcceEEEEccCCCCCcEEEEeeCC---CeEEEEECCCCceeEEE
Q 009597 319 I-----------------------------RTFSTGKIPYVVKLNPDDDKQNILLAGMSD---KKIVQWDMNTKEITQEY 366 (531)
Q Consensus 319 i-----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---g~I~iwd~~t~~~~~~~ 366 (531)
+ ..+.+.+....+.|+. ++.+|++.+.+ ..|.|.++.......-|
T Consensus 486 l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr---kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF 562 (733)
T KOG0650|consen 486 LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR---KGDYLATVMPDSGNKSVLIHQLSKRKSQSPF 562 (733)
T ss_pred hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec---CCceEEEeccCCCcceEEEEecccccccCch
Confidence 1 1111222223333333 34567776553 57889998777666667
Q ss_pred cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcc
Q 009597 367 DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 446 (531)
Q Consensus 367 ~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~ 446 (531)
....+.|.++.|+|...+|++++. ..|+|||+.....++.+.. ....|..++++|.|..|++++.|+.+..||+.-..
T Consensus 563 ~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 563 RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 667788999999999998888875 5699999988766665543 56678999999999999999999999999997543
Q ss_pred eeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC------C---CeEEEEeeccCCc----EEEEEEecC
Q 009597 447 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK------S---CKVFRTLKCHEGV----CIGCEWHPL 513 (531)
Q Consensus 447 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~------~---~~~~~~~~~h~~~----V~~v~~~p~ 513 (531)
...+.+..|.. .+..++|++.-.++++|+.||.+.|+.-. . --++..+.+|... |..+.|||
T Consensus 641 --kPyk~lr~H~~--avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP- 715 (733)
T KOG0650|consen 641 --KPYKTLRLHEK--AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP- 715 (733)
T ss_pred --chhHHhhhhhh--hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC-
Confidence 23455666643 48889999999999999999999998522 1 2356778888765 89999999
Q ss_pred CCCEEEEEeCCCCEEee
Q 009597 514 EQSKVATCGWDGLIKYW 530 (531)
Q Consensus 514 ~~~~l~t~s~Dg~I~iW 530 (531)
...+|+++|.||+|++|
T Consensus 716 ~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 716 RQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEEecCCCceEEee
Confidence 77899999999999998
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=3.2e-18 Score=168.11 Aligned_cols=219 Identities=16% Similarity=0.206 Sum_probs=182.3
Q ss_pred HHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC
Q 009597 246 EEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 325 (531)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~ 325 (531)
.|+...........|+..+.|.+|+.....+.+.+++|...|+++.++....+||+++..|.|.|..+.++....+|..+
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 44544444467778899999999999988888999999999999999999999999999999999999999888777665
Q ss_pred Ccc--eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEE-cccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCC
Q 009597 326 KIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGI 401 (531)
Q Consensus 326 ~~~--~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~-~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~ 401 (531)
... ..+.+++. +..+|.+++.+|.|.+||+....++..+ ..|..+...|+|+|.+ .+|++.+.|+.|.+||++.
T Consensus 163 sgqsvRll~ys~s--kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 163 SGQSVRLLRYSPS--KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred CCCeEEEeecccc--cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 433 34555554 5578999999999999999887776655 6799999999999954 5788999999999999998
Q ss_pred CeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCC
Q 009597 402 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 472 (531)
Q Consensus 402 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 472 (531)
......+. ..++...++|.++|.+|++|+..|.|..||++.... .+.....|... |++++|-+..
T Consensus 241 ~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--Pv~v~sah~~s--Vt~vafq~s~ 305 (673)
T KOG4378|consen 241 QASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--PVAVRSAHDAS--VTRVAFQPSP 305 (673)
T ss_pred ccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCCC--CceEeeecccc--eeEEEeeecc
Confidence 87777765 567899999999999999999999999999997643 34455566544 9999997764
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.6e-18 Score=156.94 Aligned_cols=204 Identities=16% Similarity=0.259 Sum_probs=159.6
Q ss_pred EEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEc
Q 009597 320 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 399 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~ 399 (531)
.++.... ..++.|+..+ .+|++|+.+|.|.|||+.+..+-+.+.+|..+|.+++|+++|+.|+|+|.|..|.+||+
T Consensus 19 ~tld~~~-a~~~~Fs~~G---~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 19 HTLDNPL-AECCQFSRWG---DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred eeccCCc-cceEEeccCc---ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 3444444 6677777754 58999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeCCCCCCccEEEEeCC-CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE
Q 009597 400 GIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 478 (531)
Q Consensus 400 ~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 478 (531)
..+.+++.+. ...+|..+.|+|. .+.+++.-.+..-.+.++..+........-.+.. .....+..|.+.|++|++|
T Consensus 95 ~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl-n~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 95 LKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL-NSSASHGVFDRRGKYIITG 171 (405)
T ss_pred cCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc-ccccccccccCCCCEEEEe
Confidence 9999888886 5789999999994 3444444444444455554322111111111111 2223335689999999999
Q ss_pred eCCCcEEEEECCCCeEEEEeeccC-CcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 479 DGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 479 s~dg~I~iwd~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
...|.+.|+|..+.+++..++.-. ..|..+.++- .+++|+.-+.|..||.|+
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYE 224 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEe
Confidence 999999999999999999988665 6788999987 888999999999999985
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=4.8e-18 Score=165.76 Aligned_cols=255 Identities=14% Similarity=0.175 Sum_probs=187.2
Q ss_pred cccCeeeEEecCccCceEEEEEccCC--CEEEEEecCCeEEEEeCCCCc----EEEEcc-CCCcceEEEEccCCCCCcEE
Q 009597 271 TFHGKCMRTYMGHSKAVRDISFCNDG--TKFLTASYDKNIKYWDTETGQ----VIRTFS-TGKIPYVVKLNPDDDKQNIL 343 (531)
Q Consensus 271 ~~~~~~~~~l~gH~~~V~~l~fspdg--~~l~s~s~Dg~I~vWd~~t~~----~i~~~~-~~~~~~~~~~~~~~~~~~~l 343 (531)
...-.....++-|...|++++|+|.. +++++|..-|+|-+||+.+.+ -+..+. +...+..+.|.+.+. ..+
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s~i 250 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT--SQI 250 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh--hhe
Confidence 33445566777799999999999953 578899999999999995322 223332 333456666776654 679
Q ss_pred EEeeCCCeEEEEECCCCce--eEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEE
Q 009597 344 LAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 421 (531)
Q Consensus 344 ~sg~~dg~I~iwd~~t~~~--~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~ 421 (531)
++.+.||+|++-|++.... +.........+..+.|+.+...++.+..=|...+||++++........-|...|.++++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 9999999999999987643 33333355667888999888888888888899999999876533333447789999999
Q ss_pred eC-CCCEEEEEEcCCeEEEEEcCCcceece-eeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEE
Q 009597 422 HP-NTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK----SCKVF 495 (531)
Q Consensus 422 sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~----~~~~~ 495 (531)
+| ...+|++++.|++.+|||++.-..-.. +.....| ...|.+..|||.+-.|++.+.|..|+|||.. .-.+.
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H--rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH--RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccc--cceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc
Confidence 99 567899999999999999986432221 1222334 3458889999998889999999999999984 23334
Q ss_pred EEeeccCC------cEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 496 RTLKCHEG------VCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 496 ~~~~~h~~------~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.++. |.. ......|.| +..+++.|-.-..|-|+|
T Consensus 409 ~~I~-Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 409 GTIP-HNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ceee-ccCcccccccchhheeCC-CccEEEEeccCcceeEEc
Confidence 4443 321 345678999 788888888777777765
No 154
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=159.13 Aligned_cols=252 Identities=14% Similarity=0.246 Sum_probs=184.9
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEE
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 354 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 354 (531)
.+...+++|.+.|+++.|..+++ |.+|..-|.|++|++.+......+...+...+..+...+. ..+.+-+.|+.+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEE
Confidence 45677889999999999998875 9999999999999999988877776555544544444333 45888888999999
Q ss_pred EECCCCceeE---------------------------EE--------------------------cccCCCeeEEEEec-
Q 009597 355 WDMNTKEITQ---------------------------EY--------------------------DQHLGAVNTITFVD- 380 (531)
Q Consensus 355 wd~~t~~~~~---------------------------~~--------------------------~~h~~~I~~l~~sp- 380 (531)
|++.-+..+. .+ ....+.+.|..+.-
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 9885422110 00 00123344444322
Q ss_pred CCC--EEEEEeCCCCEEEEEcCCCeEEEEee---------CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceec
Q 009597 381 SNR--RFVTSSDDKSLRVWEFGIPVVIKYIS---------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449 (531)
Q Consensus 381 ~~~--~l~s~s~Dg~I~iwd~~~~~~~~~~~---------~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 449 (531)
++. ++++|-.+|.+.+||+.++..+..+. ..|..+|.++.+.+.-..=++|+.+..+..|++.......
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 222 46678889999999999874332221 2377889999999866666788888899999886531111
Q ss_pred eeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 450 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 450 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
.......-. ...+..+.+-||++.+++++-|+.||||.+++..++..++.|.+.|.+++|+| +..++|.+|.|+.|.+
T Consensus 242 q~~~e~~lk-npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 242 QIRKEITLK-NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISL 319 (323)
T ss_pred cccceEEec-CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEe
Confidence 111111111 12356688999999999999999999999999999999999999999999999 7789999999999999
Q ss_pred eC
Q 009597 530 WD 531 (531)
Q Consensus 530 WD 531 (531)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.7e-18 Score=163.76 Aligned_cols=231 Identities=10% Similarity=0.185 Sum_probs=183.5
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCC--CcEEEEccCC-CcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCC
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTET--GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 360 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t--~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~ 360 (531)
.++|++|.|+|....|++|+.||+++||.+.. ...+..+... .+..+..|.+.+ ...+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G--~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNG--HSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCC--ceEEEecccceEEEEeecccc
Confidence 46899999999999999999999999998753 3445555433 344556666643 347999999999999999887
Q ss_pred ceeEE--EcccC-CCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeE
Q 009597 361 EITQE--YDQHL-GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 437 (531)
Q Consensus 361 ~~~~~--~~~h~-~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I 437 (531)
+..+. ..++. ..+.....++++++|+..+..|.|.+....++..+..+. -.+.|..++|+.+++.|++++.+|.|
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceE
Confidence 65432 23332 456778889999999999999999999999998887775 46789999999999999999999999
Q ss_pred EEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEEEEeeccCCcEEEEEEe
Q 009597 438 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS------CKVFRTLKCHEGVCIGCEWH 511 (531)
Q Consensus 438 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~------~~~~~~~~~h~~~V~~v~~~ 511 (531)
.+||++...++.+... .|. ..-++++.|++|.|||+|+..|.|.|||..+ .+++..+..-...|+++.|+
T Consensus 369 ~v~nl~~~~~~~rf~D-~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVD-DGS---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred EEEecCCcceEEEEee-cCc---cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 9999999866544332 222 2345688899999999999999999999764 45677776667789999999
Q ss_pred cCCCCEEEEEeC
Q 009597 512 PLEQSKVATCGW 523 (531)
Q Consensus 512 p~~~~~l~t~s~ 523 (531)
| +..+|+.||.
T Consensus 445 ~-d~qiLAiaS~ 455 (514)
T KOG2055|consen 445 H-DAQILAIASR 455 (514)
T ss_pred c-chhhhhhhhh
Confidence 9 7788887775
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=3e-16 Score=160.67 Aligned_cols=245 Identities=25% Similarity=0.521 Sum_probs=195.1
Q ss_pred EecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc-EEEEccCCCc--ceEEEEccCCCCCcEEEEe-eCCCeEEE
Q 009597 279 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-VIRTFSTGKI--PYVVKLNPDDDKQNILLAG-MSDKKIVQ 354 (531)
Q Consensus 279 ~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-~i~~~~~~~~--~~~~~~~~~~~~~~~l~sg-~~dg~I~i 354 (531)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+..... ...+.+. ......+++.. ..++.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEEE
Confidence 567899999999999999999999999999999998886 6666655332 3333332 33332345554 44999999
Q ss_pred EECCC-CceeEEEcccCCCeeEEEEecCCCEEEEEeC-CCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCC-EEEEE
Q 009597 355 WDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQ 431 (531)
Q Consensus 355 wd~~t-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~ 431 (531)
|++.. ......+..|...|..+.|+|++..+++++. |+.+++|++.....+..+.. |...+.+++|+|++. .++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcceEEEEe
Confidence 99998 7888899999999999999999998888886 99999999998766666654 889999999999998 55555
Q ss_pred EcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEeeccCCcEEEEEE
Q 009597 432 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCIGCEW 510 (531)
Q Consensus 432 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~v~~ 510 (531)
+.|+.|++||...+..+.. .+.+|.... +. .|++++.++++++.++.+++|+.+.... +..+..|...|.++.|
T Consensus 218 ~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VS--SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292 (466)
T ss_pred cCCCcEEEEECCCCcEEee--ecCCCCcce-eE--eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence 9999999998875433321 456665432 32 8999999999999999999999987664 5555678889999999
Q ss_pred ecCCCCEEEEEeCCCCEEeeC
Q 009597 511 HPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 511 ~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+| .+..+++++.|+.+++||
T Consensus 293 ~~-~~~~~~~~~~d~~~~~~~ 312 (466)
T COG2319 293 SP-DGKLLASGSSDGTVRLWD 312 (466)
T ss_pred CC-CCCEEEEeeCCCcEEEEE
Confidence 99 667777799998899995
No 157
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=1.8e-16 Score=164.65 Aligned_cols=269 Identities=16% Similarity=0.270 Sum_probs=208.9
Q ss_pred CCCCCceeeeeecccC-ee----eEEecCccCceEEEEEccC--CCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEE
Q 009597 259 GGEKGEHVEDKSTFHG-KC----MRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 331 (531)
Q Consensus 259 ~~~~~~~i~~~~~~~~-~~----~~~l~gH~~~V~~l~fspd--g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~ 331 (531)
....++.+.+|.+..+ .. +..++.-.+.|++|. +|+ =+.++.|+.+|.+.||++.+++.+.++.... ..+.
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~-s~IT 206 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF-SRIT 206 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccc-ccee
Confidence 3455667788877663 11 122233333387774 564 2458899999999999999999999997655 5555
Q ss_pred EEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCE-EEEEeCCCCEEEEEcCCCeEEEEeeC
Q 009597 332 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIKYISE 410 (531)
Q Consensus 332 ~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~-l~s~s~Dg~I~iwd~~~~~~~~~~~~ 410 (531)
++.+.+. -.+++.|..+|+|.+++++.++.+.+|+...++|+.+.|..||+. +++++..|.+.+||++....+..+..
T Consensus 207 ~ieqsPa-LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n 285 (910)
T KOG1539|consen 207 AIEQSPA-LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN 285 (910)
T ss_pred EeccCCc-ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec
Confidence 5555443 368999999999999999999999999966799999999999986 55566669999999999998888887
Q ss_pred CCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcce-----------------e-------------------------
Q 009597 411 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ-----------------L------------------------- 448 (531)
Q Consensus 411 ~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~-----------------~------------------------- 448 (531)
.|.+.|....|.|....+++.+.|+.+++|=..++.- +
T Consensus 286 ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~ 365 (910)
T KOG1539|consen 286 AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVI 365 (910)
T ss_pred cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhh
Confidence 8999999999999999999999999877763331100 0
Q ss_pred --------ce---------eee-----------------------------------------ec-----CC----c---
Q 009597 449 --------NK---------KKR-----------------------------------------FA-----GH----I--- 458 (531)
Q Consensus 449 --------~~---------~~~-----------------------------------------~~-----~~----~--- 458 (531)
.. ... +. .| .
T Consensus 366 ~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~ 445 (910)
T KOG1539|consen 366 SESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK 445 (910)
T ss_pred HHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccc
Confidence 00 000 00 00 0
Q ss_pred -cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---eccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 459 -VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL---KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 459 -~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
....+.+++.++.|++.+.|...|.|-+|++.+|-...++ .+|.++|++++... -++.+++++.+|.+++||
T Consensus 446 ~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 446 KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWD 521 (910)
T ss_pred ccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEe
Confidence 1134677899999999999999999999999999998888 58999999999987 677899999999999997
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.8e-18 Score=171.44 Aligned_cols=248 Identities=19% Similarity=0.270 Sum_probs=183.0
Q ss_pred EEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCC--------CcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC
Q 009597 278 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET--------GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 349 (531)
Q Consensus 278 ~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t--------~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 349 (531)
.++..|...|+.+.|.|....|++|+.||+|++|+++. -+.+.+|..+..+..+.+.+. .+..+++|+-|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~--n~~~~ysgg~D 365 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS--NGEHCYSGGID 365 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC--CceEEEeeccC
Confidence 38888999999999999989999999999999999932 246777777666644444443 33679999999
Q ss_pred CeEEEEECCCC----------ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC-CCccE
Q 009597 350 KKIVQWDMNTK----------EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-HSMPS 418 (531)
Q Consensus 350 g~I~iwd~~t~----------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~v~~ 418 (531)
|+|+.|++... .....+.+|.+.|+.+++++...+|++++.||++++|+...... ..+..+.. ..-.+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99999966421 23457789999999999999999999999999999999876655 22222222 22334
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeec-----CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 009597 419 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA-----GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 493 (531)
Q Consensus 419 v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-----~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 493 (531)
+.+-... ++-...+.....+++.+......+..+. +......+..+.+.|.+.+.+++..|+.|+++|..+++
T Consensus 445 vd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 445 VDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred Eeeccch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 4443322 1111223333344333322222222222 22222346678899999999999999999999999999
Q ss_pred EEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 494 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 494 ~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
++....+|...++++++.| ++-+|++++.||.+++|.
T Consensus 523 ~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred cchheeeccceecceeecC-CCceEEeecCCceeehhh
Confidence 9999999999999999999 888999999999999984
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=1.7e-17 Score=167.88 Aligned_cols=271 Identities=15% Similarity=0.238 Sum_probs=204.1
Q ss_pred HHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC
Q 009597 245 AEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 324 (531)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 324 (531)
+..++.++++..+.-+ .+..+.++++..|..+.+++||+..|.|++|+.||++|+||+.|+.|.||... .+-+..+.+
T Consensus 15 i~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH 92 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSH 92 (1081)
T ss_pred hheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeecc
Confidence 3455666666544322 23468889999999999999999999999999999999999999999999753 344445666
Q ss_pred CCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeE
Q 009597 325 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV 404 (531)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~ 404 (531)
+....|+.|+|.. +.+++++ -...-+|........ ..+ ....|.+++|..||++|+.|-.+|+|.|-+-.....
T Consensus 93 ~D~IQCMsFNP~~---h~LasCs-LsdFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 93 NDAIQCMSFNPIT---HQLASCS-LSDFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred CCeeeEeecCchH---HHhhhcc-hhhccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 7777788887754 3455554 344567776544322 221 346788999999999999999999999986433322
Q ss_pred EE-EeeCCCCCCccEEEEeCC-----CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE
Q 009597 405 IK-YISEPHMHSMPSISLHPN-----TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 478 (531)
Q Consensus 405 ~~-~~~~~~~~~v~~v~~sp~-----~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 478 (531)
+. .-..+...+|.+++|+|+ ...+++.....++.+|.+... .+...+.+ .-..+|+.+.++|.|++.|
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L-----~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRAL-----NFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccC-----CCCchhheeccCCcEEEEc
Confidence 22 222346778999999995 357888888888988887543 33322222 2235669999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 479 DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 479 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+.|+.+.+|- +.|-.+.++......|.+++.+| ++..++.|+.||+|..||
T Consensus 241 Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 241 GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhh
Confidence 9999999996 77888888877788999999999 888999999999997664
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=1.6e-17 Score=153.43 Aligned_cols=243 Identities=19% Similarity=0.339 Sum_probs=184.5
Q ss_pred EEecCccCceEEEEEcc-CCCEEEEEecC-------CeEEEEeCCC---------CcEEEEccCCC--cceEEEEccCCC
Q 009597 278 RTYMGHSKAVRDISFCN-DGTKFLTASYD-------KNIKYWDTET---------GQVIRTFSTGK--IPYVVKLNPDDD 338 (531)
Q Consensus 278 ~~l~gH~~~V~~l~fsp-dg~~l~s~s~D-------g~I~vWd~~t---------~~~i~~~~~~~--~~~~~~~~~~~~ 338 (531)
..|..|.+.|..|+-+| +.+.|+|+..+ -.+-||.+.. .+++..+.... ...|+.|.|+.+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 46777899999999999 55667766542 2477998753 23445554333 336667777443
Q ss_pred CCcEEEEeeCCCeEEEEECCCCce-eEEEc-----ccCCCeeEEEEec--CCCEEEEEeCCCCEEEEEcCCCeEEEEeeC
Q 009597 339 KQNILLAGMSDKKIVQWDMNTKEI-TQEYD-----QHLGAVNTITFVD--SNRRFVTSSDDKSLRVWEFGIPVVIKYISE 410 (531)
Q Consensus 339 ~~~~l~sg~~dg~I~iwd~~t~~~-~~~~~-----~h~~~I~~l~~sp--~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 410 (531)
.++ +..|..|.+|++..+.. +..+. .|....++-+|+| +++.+++.+ |++++.||+++......|..
T Consensus 137 ---kla-sm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 137 ---KLA-SMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred ---eeE-EeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhh
Confidence 233 34499999999977654 44432 2456778889998 667777665 88999999999988888988
Q ss_pred CCCCCccEEEEeCCC-CEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 009597 411 PHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWD 488 (531)
Q Consensus 411 ~~~~~v~~v~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~iwd 488 (531)
.|...|..+.|+|+. .+|++|+.||.|+|||++..+ ..++.+.+| ..++.++.|+|. .++|++|+.|..|.+|.
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~H--sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGH--SHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCC--ceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 999999999999975 567889999999999998753 344667777 567999999995 67888999999999996
Q ss_pred CCCC-----------------------------eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 489 WKSC-----------------------------KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 489 ~~~~-----------------------------~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
..+- -.+.++..|...|.+++|+..+.-+||+-+.||.+.|
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 5321 1245677899999999999988889999999999865
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.2e-17 Score=168.16 Aligned_cols=122 Identities=20% Similarity=0.372 Sum_probs=99.0
Q ss_pred eeeEEecCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEE------EccC-CCcceEEEEccCCCCCcEEEEe
Q 009597 275 KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIR------TFST-GKIPYVVKLNPDDDKQNILLAG 346 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~i~------~~~~-~~~~~~~~~~~~~~~~~~l~sg 346 (531)
+.+..+.+|...|+++.|+| +..+|++||.|..|+||.+..|-... .+.. .-...++.|++..++ |++.
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg---il~s 146 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG---ILAS 146 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc---eEEe
Confidence 35567789999999999999 55689999999999999997432211 1111 122456777776653 5555
Q ss_pred eCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEc
Q 009597 347 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 399 (531)
Q Consensus 347 ~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~ 399 (531)
+..|+++|||+.+++.+.++.+|...|.+..|+.||..|++++.|+.|+|||-
T Consensus 147 ~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDP 199 (1012)
T KOG1445|consen 147 GAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDP 199 (1012)
T ss_pred ccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCC
Confidence 66899999999999999999999999999999999999999999999999985
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.9e-18 Score=185.24 Aligned_cols=233 Identities=17% Similarity=0.263 Sum_probs=185.5
Q ss_pred cCCCCCCCceeeeeecccC------eeeEEecCccCceEEEEEccC-CCEEEEEecCCeEEEEeCCCCcEEEEcc-CCCc
Q 009597 256 GNAGGEKGEHVEDKSTFHG------KCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFS-TGKI 327 (531)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~------~~~~~l~gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~i~~~~-~~~~ 327 (531)
++++|.++|.|..|+.... ..+.++..|++.|+.|.|++. ++.||+|+.||.|.|||+..-+.-.++. ....
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence 4789999999999987652 456788899999999999996 4599999999999999998755444442 1223
Q ss_pred ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCC--CeeEEEEecCC-CEEEEEeCCC---CEEEEEcCC
Q 009597 328 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG--AVNTITFVDSN-RRFVTSSDDK---SLRVWEFGI 401 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~--~I~~l~~sp~~-~~l~s~s~Dg---~I~iwd~~~ 401 (531)
..+.++.|...-.++|++++.+|.+.|||++..+.+..+..|.+ .++.|.|+|++ ..+++++.|. .|.+||+|.
T Consensus 162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred ccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 34555666666678999999999999999999988888776655 47889999976 4566766654 599999987
Q ss_pred CeEEEEeeCCCCCCccEEEEeCCC-CEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCC-EEEEEe
Q 009597 402 PVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD 479 (531)
Q Consensus 402 ~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs 479 (531)
......+...|...|.++.|++.+ .+|++++.|+.|.+|+..+++.+..+. . ...++..+.|+|... .+++.+
T Consensus 242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~--~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---A--QGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---C--CCcceeeeeecCCCcchhhhhe
Confidence 655555556799999999999955 899999999999999999986664332 2 356788899999765 778888
Q ss_pred CCCcEEEEECCCCe
Q 009597 480 GEGKCWFWDWKSCK 493 (531)
Q Consensus 480 ~dg~I~iwd~~~~~ 493 (531)
-||.|-|+.+....
T Consensus 317 fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 317 FDGKISIYSLQGTD 330 (1049)
T ss_pred eccceeeeeeecCC
Confidence 99999999987543
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=5.1e-17 Score=155.93 Aligned_cols=210 Identities=18% Similarity=0.274 Sum_probs=159.9
Q ss_pred EEecCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEE-------Ecc-CCCcceEEEEccCCCCCcEEEEeeC
Q 009597 278 RTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIR-------TFS-TGKIPYVVKLNPDDDKQNILLAGMS 348 (531)
Q Consensus 278 ~~l~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~i~-------~~~-~~~~~~~~~~~~~~~~~~~l~sg~~ 348 (531)
-.+.||+++|.+++|+| +...|||||.|.+|.||.+..+.... .+. +...+..+.+++.. .++|++++.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA--~NVLlsag~ 152 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA--PNVLLSAGS 152 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc--hhhHhhccC
Confidence 45679999999999999 66789999999999999987654333 222 22334556666654 489999999
Q ss_pred CCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC-CCccEEEEeCCCCE
Q 009597 349 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-HSMPSISLHPNTNW 427 (531)
Q Consensus 349 dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~v~~v~~sp~~~~ 427 (531)
|.+|.+|++.+++.+.++. |.+-|.++.|+.+|.+|++++.|+.|||||.+++..+..-. .|. ..-..+.|-.++.+
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGKI 230 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCce
Confidence 9999999999999988888 99999999999999999999999999999999998887663 343 34566777788885
Q ss_pred EEEEE---cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeE
Q 009597 428 LAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS-GDGEGKCWFWDWKSCKV 494 (531)
Q Consensus 428 l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-gs~dg~I~iwd~~~~~~ 494 (531)
+.+|. .+.++-+||..+-........+... ..|.---|.+|.++|+. |-.|+.||.|.+....+
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTS---NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccC---CceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 55553 4678999997664333223333322 22443456788777664 55899999999887653
No 164
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.3e-16 Score=148.76 Aligned_cols=252 Identities=17% Similarity=0.269 Sum_probs=186.7
Q ss_pred HHHHHHHhhhhccCCCCCCCceeeeeecc----cCeeeEEecCccCceEEEEEcc--CCCEEEEEecCCeEEEEeCCCC-
Q 009597 244 YAEEYAKKKEEKGNAGGEKGEHVEDKSTF----HGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETG- 316 (531)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~l~gH~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~- 316 (531)
.+.++....-++.+++.+.++++.+|+.. +-.+....+.|.+.|..|.|.+ =|+.+|+|++|+++.||.-...
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 34567778888999999999999999832 3356777889999999999976 3899999999999999975211
Q ss_pred ------c--EEEEc-cCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCC------CceeEEEc-------ccCCCee
Q 009597 317 ------Q--VIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT------KEITQEYD-------QHLGAVN 374 (531)
Q Consensus 317 ------~--~i~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t------~~~~~~~~-------~h~~~I~ 374 (531)
+ ...++ .....+..+.|.|..- +-.+++++.||.|+||+... ..+..++. .+..+..
T Consensus 95 ~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl-GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 95 EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL-GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred cccccceeEEEEEeecCCcceeEEEecchhc-ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 1 12222 2344556777777653 46899999999999997643 23333443 4667889
Q ss_pred EEEEecC---CCEEEEEeCC-----CCEEEEEcCCCe----EEEEeeCCCCCCccEEEEeCC----CCEEEEEEcCCeEE
Q 009597 375 TITFVDS---NRRFVTSSDD-----KSLRVWEFGIPV----VIKYISEPHMHSMPSISLHPN----TNWLAAQSLDNQIL 438 (531)
Q Consensus 375 ~l~~sp~---~~~l~s~s~D-----g~I~iwd~~~~~----~~~~~~~~~~~~v~~v~~sp~----~~~l~s~s~Dg~I~ 438 (531)
|+.|+|. ..+|+.|+.+ +.+.||...... .+..+. .|..+|+.++|.|+ -..|++++.|| |+
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~ 251 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATKDG-VR 251 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeecCc-EE
Confidence 9999973 4568888766 479999876542 233333 58999999999995 46799999999 99
Q ss_pred EEEcCCc-----------------ceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC---CCeEEEEe
Q 009597 439 IYSTRER-----------------FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK---SCKVFRTL 498 (531)
Q Consensus 439 iwd~~~~-----------------~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~---~~~~~~~~ 498 (531)
||.+... ..+..+..+.+| .+.|..+.|+-.|..|++.+.||+|++|... ..++...+
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H--~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~ 329 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH--NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVL 329 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeeccCC--CCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEE
Confidence 9998731 233444556777 4669999999999999999999999999643 34555555
Q ss_pred ec
Q 009597 499 KC 500 (531)
Q Consensus 499 ~~ 500 (531)
+.
T Consensus 330 ~~ 331 (361)
T KOG2445|consen 330 KA 331 (361)
T ss_pred ec
Confidence 53
No 165
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.3e-17 Score=155.32 Aligned_cols=253 Identities=15% Similarity=0.241 Sum_probs=188.9
Q ss_pred eeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCC------CCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC
Q 009597 276 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE------TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 349 (531)
Q Consensus 276 ~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~------t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 349 (531)
|.+.+.+|.+.|.+|.|+.++++|++|+.|..++||.++ +.+.|.....++...+.++.++.. ...+++|..+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~ 126 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERW 126 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCc
Confidence 345677899999999999999999999999999999975 345666666666555666655543 3689999999
Q ss_pred CeEEEEECCCCceeEEEcc--cCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCe-EEEE-eeCCCCCCccEEEEeC-C
Q 009597 350 KKIVQWDMNTKEITQEYDQ--HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV-VIKY-ISEPHMHSMPSISLHP-N 424 (531)
Q Consensus 350 g~I~iwd~~t~~~~~~~~~--h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~-~~~~-~~~~~~~~v~~v~~sp-~ 424 (531)
++|..-|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||.+... .+.. +..........+-|+| .
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999999999988877753 23589999999999999999999999999998754 2222 2223456678889999 5
Q ss_pred CCEEEEEEcCCeEEEEEcCCccee----------ce-----------------------------------eeeec-CCc
Q 009597 425 TNWLAAQSLDNQILIYSTRERFQL----------NK-----------------------------------KKRFA-GHI 458 (531)
Q Consensus 425 ~~~l~s~s~Dg~I~iwd~~~~~~~----------~~-----------------------------------~~~~~-~~~ 458 (531)
..+|++.+..+-+-+||.+..... .. ...++ .|.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 677888888899999998753210 00 00000 111
Q ss_pred cccc-----eEEEEEcCCCCEEEEEeCCCcEEEEECCC----------C-------------eEEEEeeccCCcEEEEEE
Q 009597 459 VAGY-----ACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------C-------------KVFRTLKCHEGVCIGCEW 510 (531)
Q Consensus 459 ~~~~-----v~~l~~spdg~~l~sgs~dg~I~iwd~~~----------~-------------~~~~~~~~h~~~V~~v~~ 510 (531)
..++ +.+++|.-|- -+++|+.+-.|++|.+.. | +.+..+++|...+..+.|
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 1122 3345555443 388999999999998742 1 235667899999999999
Q ss_pred ecCCCCEEEEEeCCCCEEeeC
Q 009597 511 HPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 511 ~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+| ...+|++.|-...|+||-
T Consensus 366 ~~-H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 366 SQ-HNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cC-CcceEeccchhhheeccc
Confidence 99 778999999999999993
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=2.8e-17 Score=154.39 Aligned_cols=249 Identities=18% Similarity=0.287 Sum_probs=183.1
Q ss_pred EecCccCceEEEEEcc-----CCCEEEEEecCCeEEEEeCCCCc---EEEEcc---CCCcceEEEEccCCC-CCcEEEEe
Q 009597 279 TYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWDTETGQ---VIRTFS---TGKIPYVVKLNPDDD-KQNILLAG 346 (531)
Q Consensus 279 ~l~gH~~~V~~l~fsp-----dg~~l~s~s~Dg~I~vWd~~t~~---~i~~~~---~~~~~~~~~~~~~~~-~~~~l~sg 346 (531)
..++|+.+|..++|++ .-..+++++. ..+.+|.....- .++++. ..+.-+.+++..+.. ..-++++|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3467999999999985 2345777775 578898875433 333332 233446677776655 35688899
Q ss_pred eCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCeEEEEee--CCCCCCccEEEEeC
Q 009597 347 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHP 423 (531)
Q Consensus 347 ~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~~~~v~~v~~sp 423 (531)
+.-|.|+|.|+.++++...+.+|...|+.|.++|.. ++++++|.|.+||+|++++..++..+. .+|...|.++.|++
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 999999999999999999999999999999999955 689999999999999999999988775 46888999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCccee---ceeee----------------e----cCCccccceEEEEEcCCCCEEEEEeC
Q 009597 424 NTNWLAAQSLDNQILIYSTRERFQL---NKKKR----------------F----AGHIVAGYACQVNFSPDGRFVMSGDG 480 (531)
Q Consensus 424 ~~~~l~s~s~Dg~I~iwd~~~~~~~---~~~~~----------------~----~~~~~~~~v~~l~~spdg~~l~sgs~ 480 (531)
+|.+|++++.|.+|++|++....-. ..... + ....+..+|-|+.|- |.++++=+.
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 9999999999999999999743211 11000 0 011122344445554 678999999
Q ss_pred CCcEEEEEC-CCC-------------eEEEEeeccCCcEEE--EEEecCCCCEEEEEeCCCCEEeeC
Q 009597 481 EGKCWFWDW-KSC-------------KVFRTLKCHEGVCIG--CEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 481 dg~I~iwd~-~~~-------------~~~~~~~~h~~~V~~--v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
++.|..|.. +-+ ..+..+......|.- .+|.| -+..||.|...|.|.+||
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwd 335 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWD 335 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEE
Confidence 999999976 111 123333333333443 45566 667899999999999997
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=1.4e-16 Score=149.44 Aligned_cols=273 Identities=15% Similarity=0.205 Sum_probs=199.3
Q ss_pred HHHHHHHHhhhhccCCCCCCCceeeeeecccC--------------eeeEEecCccCceEEEEEc-------cCCCEEEE
Q 009597 243 KYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHG--------------KCMRTYMGHSKAVRDISFC-------NDGTKFLT 301 (531)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~~l~gH~~~V~~l~fs-------pdg~~l~s 301 (531)
.......|++++.-+.....+..+..|..... .....+ .....|.+.+|- |+..++++
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeee
Confidence 44566778888877666677777777653211 111111 123568888886 56788999
Q ss_pred EecCCeEEEEeCCCCcEEEEccCCC------cceEEEEccCCCCCcEEEEeeCCCeEEEEEC-CCCcee--EEEc-----
Q 009597 302 ASYDKNIKYWDTETGQVIRTFSTGK------IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM-NTKEIT--QEYD----- 367 (531)
Q Consensus 302 ~s~Dg~I~vWd~~t~~~i~~~~~~~------~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~-~t~~~~--~~~~----- 367 (531)
.+.+.-|++||.-+|+....+..-. ...++.|++++. .|++ +...+|++||+ +.|.-. ....
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhhhcccc
Confidence 9999999999999999888775322 234566666543 4554 45789999999 555422 2212
Q ss_pred ccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc-CCeEEEEEcCCc
Q 009597 368 QHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRER 445 (531)
Q Consensus 368 ~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~-Dg~I~iwd~~~~ 445 (531)
+..+-|.|++|+|.. +.++.++...++-||.-....++..+. +|.+.|+.++|.++|+.|++|+. |..|..||++..
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 236789999999954 589999999999998887777776665 69999999999999999999886 679999999974
Q ss_pred ceeceeeeecCCcc-ccceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeeccCCcEEEEEEecCCCCEEEEEeC
Q 009597 446 FQLNKKKRFAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523 (531)
Q Consensus 446 ~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~ 523 (531)
... +-.+..|.. ...-.-....|++++|++|+.+|.|++||++. +..+..+..|...|+.++++| --.+++|++.
T Consensus 284 ~~p--v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP-~mpilatssG 360 (406)
T KOG2919|consen 284 RDP--VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP-IMPILATSSG 360 (406)
T ss_pred cch--hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCc-ccceeeeccC
Confidence 332 222333332 11122266789999999999999999999998 777888888999999999999 5667888765
Q ss_pred C
Q 009597 524 D 524 (531)
Q Consensus 524 D 524 (531)
.
T Consensus 361 q 361 (406)
T KOG2919|consen 361 Q 361 (406)
T ss_pred c
Confidence 3
No 168
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.6e-17 Score=152.26 Aligned_cols=238 Identities=18% Similarity=0.286 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCceeeeeecccC------------------------------------eeeEEe----
Q 009597 241 QKKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHG------------------------------------KCMRTY---- 280 (531)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~~~l---- 280 (531)
....+.+++.+.+++.+++...++.|++|++..- ..++.|
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 4455678888999999999999999999986432 111111
Q ss_pred -------------------cCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCc-ceEEEEccCCCCC
Q 009597 281 -------------------MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQ 340 (531)
Q Consensus 281 -------------------~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~ 340 (531)
+-|.-.|..+-...++.+|+|++.|..|.||++. |+.+..+..... .+...++| .+
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP---~G 240 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP---DG 240 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC---CC
Confidence 1355667777777788999999999999999998 888888865443 45556666 45
Q ss_pred cEEEEeeCCCeEEEEECC---CC-----ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC-------eEE
Q 009597 341 NILLAGMSDKKIVQWDMN---TK-----EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-------VVI 405 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~---t~-----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~-------~~~ 405 (531)
+++++++..-.|++|.+- .| ..+.++++|...|..++|+++.+++++.|.||+++|||++.. ..+
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence 789999999999999872 22 245678999999999999999999999999999999998532 122
Q ss_pred EEee---CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC
Q 009597 406 KYIS---EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 482 (531)
Q Consensus 406 ~~~~---~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 482 (531)
+... ......-..+.++|+|+.|++ +....|.+|..+++......... | ...|.+|+|+++|+++++++ |.
T Consensus 321 k~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~--h--~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 321 KEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDI--H--STTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred hcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHHh--h--cCceeeEEecCCCcEEeeec-ce
Confidence 2111 112233448999999998877 45678999998887555433322 2 45689999999999999886 45
Q ss_pred cEEEEE
Q 009597 483 KCWFWD 488 (531)
Q Consensus 483 ~I~iwd 488 (531)
.++++.
T Consensus 395 ~vrv~~ 400 (420)
T KOG2096|consen 395 YVRVIR 400 (420)
T ss_pred eeeeec
Confidence 677664
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=5.3e-15 Score=151.37 Aligned_cols=263 Identities=26% Similarity=0.503 Sum_probs=202.2
Q ss_pred CCCCCceeeeeeccc-CeeeEEecCccCceEEEEEccCCCEEEEEec-CCeEEEEeCCCCcEEEEccC-CCcceEEEEcc
Q 009597 259 GGEKGEHVEDKSTFH-GKCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQVIRTFST-GKIPYVVKLNP 335 (531)
Q Consensus 259 ~~~~~~~i~~~~~~~-~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~ 335 (531)
.+..++.+..|+... ......+.+|...|.+++|+|++..+++++. |+.+++|++..+..+..+.. ......+.+.+
T Consensus 129 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 208 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208 (466)
T ss_pred cCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC
Confidence 344477899999887 8899999999999999999999998888885 99999999998888888765 33345555553
Q ss_pred CCCCCcEEEEeeCCCeEEEEECCCCceeE-EEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeE-EEEeeCCCC
Q 009597 336 DDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV-IKYISEPHM 413 (531)
Q Consensus 336 ~~~~~~~l~sg~~dg~I~iwd~~t~~~~~-~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~ 413 (531)
. ...++++++.|+.|++||...+..+. .+..|...+ ...|++++.++++++.|+.+++|+++.... ...+ ..|.
T Consensus 209 ~--~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~ 284 (466)
T COG2319 209 D--GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHS 284 (466)
T ss_pred C--cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCC
Confidence 2 22355555999999999999888888 688888875 448999998999999999999999987664 4344 4578
Q ss_pred CCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE-eCCCcEEEEECCCC
Q 009597 414 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-DGEGKCWFWDWKSC 492 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~iwd~~~~ 492 (531)
..+.++.|+|++..+++++.|+.+.+|+........... ...|. ..+..+.|.+++..++.+ ..|+.+.+|++...
T Consensus 285 ~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHE--GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccC--CceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 899999999988888889999999999888765443333 22443 247778884343556555 67889999999887
Q ss_pred eEEEEeeccCCcEEEEEEecCCCCEEEE-EeCCCCEEeeC
Q 009597 493 KVFRTLKCHEGVCIGCEWHPLEQSKVAT-CGWDGLIKYWD 531 (531)
Q Consensus 493 ~~~~~~~~h~~~V~~v~~~p~~~~~l~t-~s~Dg~I~iWD 531 (531)
........+. .+..+.+.+ . ..+++ ++.++.+.+||
T Consensus 362 ~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 362 KPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWD 398 (466)
T ss_pred ceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEe
Confidence 7333333222 288999998 7 55555 88899999996
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=1.2e-18 Score=180.23 Aligned_cols=241 Identities=22% Similarity=0.329 Sum_probs=187.9
Q ss_pred cCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 273 ~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
+.+.++.+.||..+|.|+.|...|.++++|+.|..++||..+++.++.....+.. .+..+.... ...++++++.|..|
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-ditdlavs~-~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG-DITDLAVSS-NNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc-ccchhccch-hhhhhhhcccCceE
Confidence 4566788899999999999999999999999999999999999999998865443 333333222 23578899999999
Q ss_pred EEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC----CCCCccEEEEeCCCCEE
Q 009597 353 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP----HMHSMPSISLHPNTNWL 428 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~----~~~~v~~v~~sp~~~~l 428 (531)
++|.+..+.++..+.+|.++|++|+|+|-. +.+.||++++||.+ ...+.+...+ ...-+.++.|..++.-+
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccc
Confidence 999999999999999999999999999954 88899999999998 2222222111 22345667777788889
Q ss_pred EEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEE
Q 009597 429 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG 507 (531)
Q Consensus 429 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 507 (531)
++++.|+.-..|.+.... .+... +.-+.++.+ ..+.++.-.+-.+++|++.+|.+++.+.+|...+..
T Consensus 332 ~Tgs~d~ea~n~e~~~l~---------~~~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yv 400 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLA---------WRSNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYV 400 (1113)
T ss_pred ccccCCcccccchhhHhh---------hhccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceee
Confidence 999999988888654311 11100 111122222 245566667788999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCCEEeeC
Q 009597 508 CEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 508 v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+.+||.+.....+++.||.+.|||
T Consensus 401 Ld~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 401 LDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred eeecCCCcHhhhhccCCCceEeee
Confidence 999999999999999999999998
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.9e-16 Score=167.87 Aligned_cols=270 Identities=16% Similarity=0.218 Sum_probs=191.3
Q ss_pred cCCCCCCCceeeeeecccCeeeEEecCcc---CceEEEEEcc--CCCEEEEEecCCeEEEEeCC-C----CcEEEEcc--
Q 009597 256 GNAGGEKGEHVEDKSTFHGKCMRTYMGHS---KAVRDISFCN--DGTKFLTASYDKNIKYWDTE-T----GQVIRTFS-- 323 (531)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~~~l~gH~---~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~-t----~~~i~~~~-- 323 (531)
.++..++...|.+|+...++++..|..+. ..|+.+++-+ |..++++|+.||.|+||+-- + .+.+..+.
T Consensus 1078 ~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~L 1157 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSL 1157 (1387)
T ss_pred eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccc
Confidence 34556667889999999999999887654 5799999977 45689999999999999642 2 23332221
Q ss_pred ----CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEccc-CCCeeEEEEec-CCCEEEEEeCCCCEEEE
Q 009597 324 ----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-LGAVNTITFVD-SNRRFVTSSDDKSLRVW 397 (531)
Q Consensus 324 ----~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h-~~~I~~l~~sp-~~~~l~s~s~Dg~I~iw 397 (531)
.+.....+.+.+....+.++++| .-..|+|||......+..+... ...|+++.-.- .|+.|++|..||.|++|
T Consensus 1158 s~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvy 1236 (1387)
T KOG1517|consen 1158 SDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVY 1236 (1387)
T ss_pred cccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEe
Confidence 11111223444444444555555 4889999999988777766433 34566665443 57899999999999999
Q ss_pred EcCCCeE--EEEeeCCCCCC--ccEEEEeCCCCE-EEEEEcCCeEEEEEcCCcceeceeeeecCCcc-ccceEEEEEcCC
Q 009597 398 EFGIPVV--IKYISEPHMHS--MPSISLHPNTNW-LAAQSLDNQILIYSTRERFQLNKKKRFAGHIV-AGYACQVNFSPD 471 (531)
Q Consensus 398 d~~~~~~--~~~~~~~~~~~--v~~v~~sp~~~~-l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spd 471 (531)
|.+.... .......|... |..+.+.+.|-- |++|+.+|.|++||++......... ...|-. ++..+++..++.
T Consensus 1237 D~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1237 DRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-IVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred ecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-eeeccccCccceeeeeccC
Confidence 9987543 33333456666 999999987654 9999999999999999853322222 222221 224788999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecc-------CCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 472 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-------EGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 472 g~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
...+|+|+. +.|.||++. |+.+..++.+ .+.+.|++||| ..-++|.|+.|..|.||
T Consensus 1316 apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1316 APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEe
Confidence 999999998 899999975 3444434322 34679999999 66788889999999887
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.6e-15 Score=134.97 Aligned_cols=268 Identities=14% Similarity=0.220 Sum_probs=182.1
Q ss_pred HHHHhhhhccCCCCCCCceeeeeeccc----------CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 009597 247 EYAKKKEEKGNAGGEKGEHVEDKSTFH----------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 316 (531)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 316 (531)
.-++++.++.++.|...+.|-+.+... ...+..+++|.++|..++|.. .+|++|+ ||.|+-|.....
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeehhh
Confidence 445667777777777777777665432 244567799999999999983 4688887 699999976432
Q ss_pred cE------EEEcc------CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCE
Q 009597 317 QV------IRTFS------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 384 (531)
Q Consensus 317 ~~------i~~~~------~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~ 384 (531)
.. +.... ....+.+-.+..++..+. ++.++.|+.++.||+++|+..+++++|.+.|.++.--.....
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 11 11111 111223333333333334 444458999999999999999999999999999998777778
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEeeCCCC---------CCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeec
Q 009597 385 FVTSSDDKSLRVWEFGIPVVIKYISEPHM---------HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 455 (531)
Q Consensus 385 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~---------~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 455 (531)
+++|+.||++||||+++.+.+..+..... ..|.+++ -+..+|++|+ ...+.+|.++...+... ..+.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~v-fpip 246 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTCV-FPIP 246 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceEE-Eecc
Confidence 99999999999999999998887753211 1233443 4577887765 56799999998765432 3344
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 456 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 456 ~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
++ +..+.|.. ..+++++..+.|.-|.+. |.+-..+......+.+..|+..--.+|-.+|..+.+.|+
T Consensus 247 a~-----v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 247 AR-----VHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cc-----eeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 44 44467764 477888888889988764 455555555555677777776333455556666666553
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=1.2e-15 Score=141.40 Aligned_cols=253 Identities=15% Similarity=0.270 Sum_probs=182.9
Q ss_pred CeeeEEecCccCceEEEEEcc--C-CCEEEEEec----CCeEEEEeC--CCCcEEEE--ccCCCcceEEEEccCCCC--C
Q 009597 274 GKCMRTYMGHSKAVRDISFCN--D-GTKFLTASY----DKNIKYWDT--ETGQVIRT--FSTGKIPYVVKLNPDDDK--Q 340 (531)
Q Consensus 274 ~~~~~~l~gH~~~V~~l~fsp--d-g~~l~s~s~----Dg~I~vWd~--~t~~~i~~--~~~~~~~~~~~~~~~~~~--~ 340 (531)
++.+.+|..|- .+.++.|+. + .-+|+.|+. .+.|.|-.+ ++++.+.. |.+.-++.-+.|.|+..+ .
T Consensus 35 ~~eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 35 RKEIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred cceEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc
Confidence 45566776553 688999984 2 346888875 355665544 45555543 344555666777776532 2
Q ss_pred cEEEEeeCCCeEEEEECCCCc--e--eEE-----EcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeE--EEEe
Q 009597 341 NILLAGMSDKKIVQWDMNTKE--I--TQE-----YDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVV--IKYI 408 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~--~--~~~-----~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~--~~~~ 408 (531)
.+|++ .+..+++|.+...+ . ... -..+..++++..|+. +.+++.++|-|-+..|||++++.. ++..
T Consensus 114 dlLAT--s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLAT--SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhc--ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 34443 34689999986322 1 111 133567999999997 678899999999999999998733 4444
Q ss_pred eCCCCCCccEEEEeCC-CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEEEeC-CCcEE
Q 009597 409 SEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDG-EGKCW 485 (531)
Q Consensus 409 ~~~~~~~v~~v~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~-dg~I~ 485 (531)
...|...|..++|... -..|++.+.||.|++||++....- ...+.+.........++|++. -+++++-.. ...|.
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 4469999999999984 467899999999999999975322 222444433455777888874 566766554 45799
Q ss_pred EEECCC-CeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 486 FWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 486 iwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|.|++. +.++..++.|.+.|++++|.|+....|+|||.|....|||
T Consensus 270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred EEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 999985 6789999999999999999999999999999999999998
No 174
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.71 E-value=4.6e-16 Score=157.45 Aligned_cols=240 Identities=17% Similarity=0.277 Sum_probs=167.9
Q ss_pred EEEcc---CCCEEEEEecCCeEEEEeCCCCcEE-----EEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc
Q 009597 290 ISFCN---DGTKFLTASYDKNIKYWDTETGQVI-----RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 361 (531)
Q Consensus 290 l~fsp---dg~~l~s~s~Dg~I~vWd~~t~~~i-----~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~ 361 (531)
..|++ ....|+.+..||.|.++|....... ......|...++.+.+.+ +...|++++.|.+|++||+.+.+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccce
Confidence 56665 2457889999999999998654322 122344555666666665 56789999999999999999998
Q ss_pred eeEE--EcccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCeE--------------------EE----Eee--CCC
Q 009597 362 ITQE--YDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVV--------------------IK----YIS--EPH 412 (531)
Q Consensus 362 ~~~~--~~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~--------------------~~----~~~--~~~ 412 (531)
++.. +.+|.+.|.+++|.|.+ ..|++|+.||.|.|||++-... .+ .+. ..+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8877 89999999999999955 5799999999999999863220 00 000 012
Q ss_pred CCCccE---EEEeCCCCEEEEEEc-CCeEEEEEcCCcceeceeee-----ecCC-ccccceEEEEEcCCCCEEEEEeCCC
Q 009597 413 MHSMPS---ISLHPNTNWLAAQSL-DNQILIYSTRERFQLNKKKR-----FAGH-IVAGYACQVNFSPDGRFVMSGDGEG 482 (531)
Q Consensus 413 ~~~v~~---v~~sp~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~-----~~~~-~~~~~v~~l~~spdg~~l~sgs~dg 482 (531)
...|.+ +.+..|...|++++. |+.|+|||++.......... +..| .....+.++.....|.+|.+.+.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 223444 445557788888877 99999999997654432221 1122 1122355577777889999988999
Q ss_pred cEEEEECCCC--eEEEEeeccCC--cEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 483 KCWFWDWKSC--KVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 483 ~I~iwd~~~~--~~~~~~~~h~~--~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.|++|++.+. .++..+.++.. .-..-..+| ++.+|++|++|....+|.
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeee
Confidence 9999999864 33444444432 122334677 778999999999999993
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.3e-14 Score=146.89 Aligned_cols=265 Identities=9% Similarity=0.126 Sum_probs=170.2
Q ss_pred CCCceeeeeeccc-C--eeeEEecCccCceEEEEEccCCCEEEEEe-cCCeEEEEeCC-CCcE--EEEccCCCcceEEEE
Q 009597 261 EKGEHVEDKSTFH-G--KCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTE-TGQV--IRTFSTGKIPYVVKL 333 (531)
Q Consensus 261 ~~~~~i~~~~~~~-~--~~~~~l~gH~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~-t~~~--i~~~~~~~~~~~~~~ 333 (531)
..++.|..|+..+ + +.+.++. +.+....++++|++++|++++ .++.|.+|++. ++.. +........+..+.+
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~ 87 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST 87 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence 4567778887742 3 3556664 446688899999999887664 57899999986 3432 333333334445555
Q ss_pred ccCCCCCcEEEEeeCCCeEEEEECCCC----ceeEEEcccCCCeeEEEEecCCCEEEEEe-CCCCEEEEEcCCCeEEEE-
Q 009597 334 NPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVVIKY- 407 (531)
Q Consensus 334 ~~~~~~~~~l~sg~~dg~I~iwd~~t~----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~- 407 (531)
.++ +..++++...++.|.+|++.+. +.+..+. +.....+++++|+++++++++ .++.|.+||+.....+..
T Consensus 88 ~~~--g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 88 DHQ--GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred CCC--CCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 553 3345555556899999999642 2233332 334567889999999886554 568999999976332211
Q ss_pred ----eeCCCCCCccEEEEeCCCCEEEEEEc-CCeEEEEEcCCc-ceeceeeeec---CC-ccccceEEEEEcCCCCEEEE
Q 009597 408 ----ISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRER-FQLNKKKRFA---GH-IVAGYACQVNFSPDGRFVMS 477 (531)
Q Consensus 408 ----~~~~~~~~v~~v~~sp~~~~l~s~s~-Dg~I~iwd~~~~-~~~~~~~~~~---~~-~~~~~v~~l~~spdg~~l~s 477 (531)
+..+.......++|+|++++++++.. +++|.+|++... ..+.....+. .. ....+...+.++|+|++|++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 11122345678999999999988876 899999999732 1111222221 11 11223446889999999999
Q ss_pred EeC-CCcEEEEECCCCe----EEEEeeccCCcEEEEEEecCCCCEEEEEe-CCCCEEeeC
Q 009597 478 GDG-EGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 531 (531)
Q Consensus 478 gs~-dg~I~iwd~~~~~----~~~~~~~h~~~V~~v~~~p~~~~~l~t~s-~Dg~I~iWD 531 (531)
+.. ++.|.+|++.... .+..+... .....+.++| ++.+|+++. .+++|.+|+
T Consensus 245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~-dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDH-SGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred ecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECC-CCCEEEEEEccCCcEEEEE
Confidence 864 7899999985432 23333221 2345789999 566666555 489999983
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=8.9e-16 Score=142.14 Aligned_cols=236 Identities=17% Similarity=0.310 Sum_probs=178.1
Q ss_pred CccCceEEEEEccCC-----CEEEEEecCCeEEEEeCCC--CcE--EEEcc----CCCcceEEEEccCCCCCcEEEEeeC
Q 009597 282 GHSKAVRDISFCNDG-----TKFLTASYDKNIKYWDTET--GQV--IRTFS----TGKIPYVVKLNPDDDKQNILLAGMS 348 (531)
Q Consensus 282 gH~~~V~~l~fspdg-----~~l~s~s~Dg~I~vWd~~t--~~~--i~~~~----~~~~~~~~~~~~~~~~~~~l~sg~~ 348 (531)
.|.-+++.+.|.|+. .+|||++ | .+|||.+.. .+. ...+. ........+|.+..-..+++.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 589999999999975 2466655 3 899999863 221 11121 2233456677777777789999999
Q ss_pred CCeEEEEECCCCc---eeEEEcccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCeEEEEeeC-CC-CCCccEEEEe
Q 009597 349 DKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISE-PH-MHSMPSISLH 422 (531)
Q Consensus 349 dg~I~iwd~~t~~---~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~-~~~v~~v~~s 422 (531)
|-+..|||++++. ....+-.|...|..|+|...+ +.|++++.||+||+||++....-..+.+ +. ..+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999863 466778899999999999855 4699999999999999998765444443 22 5678888998
Q ss_pred C-CCCEEEEEEcCC-eEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe------
Q 009597 423 P-NTNWLAAQSLDN-QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCK------ 493 (531)
Q Consensus 423 p-~~~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~iwd~~~~~------ 493 (531)
+ +.+++++-..|. .|.|.|++... ..+..+.+|. +.|+.++|.|. ...|++++.|..+.|||+...-
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H~--a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNHQ--ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCC--cceehhhcCc--ccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 8 567888877664 79999998753 3455677784 55999999995 6789999999999999997532
Q ss_pred EEEEeeccCCcEEEEEEecCCCCEEEEEeCC
Q 009597 494 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 524 (531)
Q Consensus 494 ~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~D 524 (531)
++..+. ..+.|..+.|++..+..++.|...
T Consensus 328 Pilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 328 PILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred chhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 222333 456799999999888888887643
No 177
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.8e-15 Score=158.45 Aligned_cols=234 Identities=13% Similarity=0.103 Sum_probs=163.0
Q ss_pred CceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecC---CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCC
Q 009597 263 GEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 339 (531)
Q Consensus 263 ~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~ 339 (531)
+..+++|+.. +...+.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++...............|++++
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG-- 259 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDG-- 259 (429)
T ss_pred eEEEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCC--
Confidence 3567888764 44467788899999999999999999988754 36999999888643222122222345566543
Q ss_pred CcEEEEeeCCCeEEE--EECCCCceeEEEcccCCCeeEEEEecCCCEEEEEe-CCCCEEEEEcCCC-eEEEEeeCCCCCC
Q 009597 340 QNILLAGMSDKKIVQ--WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIP-VVIKYISEPHMHS 415 (531)
Q Consensus 340 ~~~l~sg~~dg~I~i--wd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~Dg~I~iwd~~~~-~~~~~~~~~~~~~ 415 (531)
..++++...+|.+.| ||+.++.. ..+..+...+....|+|+|+.|+.++ .++...||++... .....+ . +..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~~~- 335 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-GRG- 335 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-CCC-
Confidence 234444556776555 56666654 45556777788999999999877665 5788888887542 122222 2 222
Q ss_pred ccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCe
Q 009597 416 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW--KSCK 493 (531)
Q Consensus 416 v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~--~~~~ 493 (531)
.+..|+|+|++|+..+.++ +.+||+.++...... .... ...+.|+|+|++|+.++.+|.+.+|++ .+++
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt---~~~~----~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS---STFL----DESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec---CCCC----CCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 4578999999999887765 556998876432111 1111 223789999999999999998888875 4688
Q ss_pred EEEEeeccCCcEEEEEEec
Q 009597 494 VFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 494 ~~~~~~~h~~~V~~v~~~p 512 (531)
....+..|.+.+...+|+|
T Consensus 407 ~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred ceEEccCCCCCCCCcccCC
Confidence 8888988988899999998
No 178
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=8.1e-17 Score=158.33 Aligned_cols=253 Identities=20% Similarity=0.317 Sum_probs=190.8
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc--------------------------
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-------------------------- 328 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~-------------------------- 328 (531)
.+...|.+|.+.|..|.|+..|..|+|||.|..|.+||...+.....|..+|..
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 455678899999999999999999999999999999998776655555433322
Q ss_pred -----------------------eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEE---cccCC---CeeEEEEe
Q 009597 329 -----------------------YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLG---AVNTITFV 379 (531)
Q Consensus 329 -----------------------~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~---~~h~~---~I~~l~~s 379 (531)
..+.+.+. ..+-|.+++.|+.+.-+|++.+.....+ ..+.. ...+|+..
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~--sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPD--SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCC--CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 11222222 2345778888888888888776543332 22333 56788898
Q ss_pred cCCC-EEEEEeCCCCEEEEEcCCCeE------EEEeeC-----CCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcce
Q 009597 380 DSNR-RFVTSSDDKSLRVWEFGIPVV------IKYISE-----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 447 (531)
Q Consensus 380 p~~~-~l~s~s~Dg~I~iwd~~~~~~------~~~~~~-----~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~ 447 (531)
|.+. .|++++.|-.+++||.+.-.. +..+.. ...-.|++++|+.++.-|++...|-.|++|.-..+.-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 8655 799999999999999865321 122211 2344699999998888888888899999995322211
Q ss_pred ----------eceeeeecCCccccceEEEEE-cCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCC
Q 009597 448 ----------LNKKKRFAGHIVAGYACQVNF-SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 516 (531)
Q Consensus 448 ----------~~~~~~~~~~~~~~~v~~l~~-spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 516 (531)
....+.++||.+...|..+.| -|...|+++|+.-|.|.||+-++++.+.-+.+....|+|+.=|| --.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~P 449 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLP 449 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCc
Confidence 112234899988888888775 67889999999999999999999999999988777999999999 556
Q ss_pred EEEEEeCCCCEEee
Q 009597 517 KVATCGWDGLIKYW 530 (531)
Q Consensus 517 ~l~t~s~Dg~I~iW 530 (531)
+||++|-|.-||||
T Consensus 450 vLAsSGid~DVKIW 463 (559)
T KOG1334|consen 450 VLASSGIDHDVKIW 463 (559)
T ss_pred hhhccCCccceeee
Confidence 89999999999999
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3e-15 Score=158.97 Aligned_cols=247 Identities=19% Similarity=0.302 Sum_probs=184.1
Q ss_pred CccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc----eEEEEccCCCCCcEEEEeeCCCeEEEEEC
Q 009597 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP----YVVKLNPDDDKQNILLAGMSDKKIVQWDM 357 (531)
Q Consensus 282 gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~----~~~~~~~~~~~~~~l~sg~~dg~I~iwd~ 357 (531)
+...+-..+.|+|=...++++...-.|+|||.+.++++..|..+... ..+.+.-. .+..++++|+.||.|+||+-
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe-~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE-QDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc-cchhheeeeccCceEEEecc
Confidence 33446778889987778888887779999999999999988766543 22333222 23468999999999999964
Q ss_pred C-----CCceeEEEccc-------CCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC-C
Q 009597 358 N-----TKEITQEYDQH-------LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-N 424 (531)
Q Consensus 358 ~-----t~~~~~~~~~h-------~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~ 424 (531)
- ..+.+..+.+- .+.-.-+.|.....+|+++++-..|+|||......+..+.......++++.-+- .
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 2 22344433221 112234578777778888888899999999999888888776677777776543 5
Q ss_pred CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeE--EEEeecc
Q 009597 425 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF-VMSGDGEGKCWFWDWKSCKV--FRTLKCH 501 (531)
Q Consensus 425 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~sgs~dg~I~iwd~~~~~~--~~~~~~h 501 (531)
|+.|++|..||.|++||.+....-..+..+..|.....|..+.+.+.|-- |++|+.+|.|++||++.... ..++..|
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 79999999999999999987655445566677765555888999887655 99999999999999997422 2333444
Q ss_pred C--C-cEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 502 E--G-VCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 502 ~--~-~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
. + .++++..|+ ...++|+|+. +.|+|||
T Consensus 1301 ~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHE-HAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred cccCccceeeeecc-CCCeeeecCc-ceEEEEe
Confidence 4 4 489999999 7778998887 9999996
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=3.3e-15 Score=144.20 Aligned_cols=265 Identities=17% Similarity=0.252 Sum_probs=183.9
Q ss_pred cCCCCCCCceeeeeecccC---------eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCC--------C---
Q 009597 256 GNAGGEKGEHVEDKSTFHG---------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--------T--- 315 (531)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~---------~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~--------t--- 315 (531)
.+++++.+..|++|....+ +.+..|..|..+|+++.|+|+|..|+||+.+|.|.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 6778888888899875432 4456788999999999999999999999999999999765 2
Q ss_pred --C---cEEEEcc-CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEe
Q 009597 316 --G---QVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 389 (531)
Q Consensus 316 --~---~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s 389 (531)
. ...+.+. +...++-++|.+ +++++++++.|..+++||+..|.....+..|...+..++|.|-++++++-+
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~---d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSP---DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hCccceEEEEEecccccchhhhhccC---CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc
Confidence 0 1111121 223344444444 347899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEcCCCeEEEEeeC------------------CCC----CCccEEEEeCCCCEEEEEEc----CC-----eEE
Q 009597 390 DDKSLRVWEFGIPVVIKYISE------------------PHM----HSMPSISLHPNTNWLAAQSL----DN-----QIL 438 (531)
Q Consensus 390 ~Dg~I~iwd~~~~~~~~~~~~------------------~~~----~~v~~v~~sp~~~~l~s~s~----Dg-----~I~ 438 (531)
.|...+++.+.....+..+.. -|. .-...++|+|+|.+|++.+. .+ +.+
T Consensus 185 ~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tY 264 (434)
T KOG1009|consen 185 SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSY 264 (434)
T ss_pred cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeE
Confidence 999888887755433322210 011 12456889999999887542 22 334
Q ss_pred EEEcCCcceeceeeeecCCccccceEEEEEcC------------------CCCEEEEEeCCCcEEEEECCCCeEEEEee-
Q 009597 439 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSP------------------DGRFVMSGDGEGKCWFWDWKSCKVFRTLK- 499 (531)
Q Consensus 439 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp------------------dg~~l~sgs~dg~I~iwd~~~~~~~~~~~- 499 (531)
+|+-....+ ....+.+. ...+..+.|+| -+-.++.++ ...|+|||..+..++....
T Consensus 265 vfsrk~l~r--P~~~lp~~--~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~n 339 (434)
T KOG1009|consen 265 VFSRKDLKR--PAARLPSP--KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDN 339 (434)
T ss_pred eeccccccC--ceeecCCC--CcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEee
Confidence 444332111 11111111 11122233332 222344444 4589999999988877665
Q ss_pred ccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 500 CHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 500 ~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
-|-..|+.++|++ ++..|+..|.||...+
T Consensus 340 ihy~~iTDiaws~-dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 340 IHYSAITDIAWSD-DGSVLLVSSTDGFCSL 368 (434)
T ss_pred eeeeeecceeecC-CCcEEEEeccCCceEE
Confidence 6888999999999 8889999999997543
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=3.3e-15 Score=143.56 Aligned_cols=200 Identities=18% Similarity=0.337 Sum_probs=153.7
Q ss_pred CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCC-------ceeEEEcccCCCeeEEEEecC-CCEEEEEeCCCCEE
Q 009597 324 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-------EITQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLR 395 (531)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~-------~~~~~~~~h~~~I~~l~~sp~-~~~l~s~s~Dg~I~ 395 (531)
.+|...++.+.+.+.+.+.|++|+.|.+|.||++..+ +++..+.+|...|..++|+|. .+.|++++.|.+|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 4555556555555555589999999999999998543 457788999999999999994 46789999999999
Q ss_pred EEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEE
Q 009597 396 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 475 (531)
Q Consensus 396 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 475 (531)
||++.++..+..+. |...|.++.|+.+|.+|++.+.|..|+|||.+.+..+.......|+. ...+.|-.+|.++
T Consensus 158 iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k----~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 158 IWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK----PARAIFLASGKIF 231 (472)
T ss_pred EEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC----cceeEEeccCcee
Confidence 99999998887765 89999999999999999999999999999999987765443333332 3346688888866
Q ss_pred EEEe---CCCcEEEEECCCCe---EEEEeeccCCcEEEEEEecCCCCEEEEEe-CCCCEEeeC
Q 009597 476 MSGD---GEGKCWFWDWKSCK---VFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 531 (531)
Q Consensus 476 ~sgs---~dg~I~iwd~~~~~---~~~~~~~h~~~V~~v~~~p~~~~~l~t~s-~Dg~I~iWD 531 (531)
.+|. ++..+-+||..... .+..+.... .|.---|.+ +..++..|| .|+.||.|.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~-dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDP-DTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecC-CCCEEEEEecCCcceEEEE
Confidence 5554 57789999876432 344554433 455556777 666666655 499999873
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=2.6e-15 Score=138.94 Aligned_cols=221 Identities=15% Similarity=0.269 Sum_probs=159.9
Q ss_pred cCCeEEEEeCCCCc--EEEEccCCCcceEEEEccCCCCCcEEEEeeCC-------CeEEEEECCCC---------ceeEE
Q 009597 304 YDKNIKYWDTETGQ--VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-------KKIVQWDMNTK---------EITQE 365 (531)
Q Consensus 304 ~Dg~I~vWd~~t~~--~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-------g~I~iwd~~t~---------~~~~~ 365 (531)
.|+.|.+.+++.+. .....-.++...+-.+...+.+..+|+++..+ -.+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 36777777765432 22222233333444444444455777777553 25779988532 33444
Q ss_pred Ec-ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeE-EEEee----CCCCCCccEEEEeC--CCCEEEEEEcCCeE
Q 009597 366 YD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV-IKYIS----EPHMHSMPSISLHP--NTNWLAAQSLDNQI 437 (531)
Q Consensus 366 ~~-~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~----~~~~~~v~~v~~sp--~~~~l~s~s~Dg~I 437 (531)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..... ...+. ..+....++-+|+| +++.+++ ..|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcE
Confidence 44 4667999999999999888876 77899999987654 22222 23456788999999 6776666 569999
Q ss_pred EEEEcCCcceeceeeeecCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CeEEEEeeccCCcEEEEEEecCCC
Q 009597 438 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQ 515 (531)
Q Consensus 438 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~ 515 (531)
..||+++..+...+..-.+ ..+..+.|+|+.+ +|++|+.||.|+|||.+. ..++..+.+|...|.++.|+|...
T Consensus 196 ~~~D~RT~~~~~sI~dAHg----q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHG----QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred EEEEccchhhhcchhhhhc----ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence 9999998766554443333 3378899999865 577889999999999985 567899999999999999999888
Q ss_pred CEEEEEeCCCCEEee
Q 009597 516 SKVATCGWDGLIKYW 530 (531)
Q Consensus 516 ~~l~t~s~Dg~I~iW 530 (531)
.+++|+|.|..|.+|
T Consensus 272 qLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLS 286 (370)
T ss_pred eEEEecCCCceeEEE
Confidence 899999999999887
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=7.4e-16 Score=153.36 Aligned_cols=220 Identities=23% Similarity=0.396 Sum_probs=165.3
Q ss_pred eeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcce--EEEEccCCCCCcEEEEeeCCCeEE
Q 009597 276 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY--VVKLNPDDDKQNILLAGMSDKKIV 353 (531)
Q Consensus 276 ~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~dg~I~ 353 (531)
+...|.||++.|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+..+|... +++|.|... ..++++|..|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC-CeEEEeccCcceEE
Confidence 345788999999999999999999999999999999999999999999888764 456666554 37899999999999
Q ss_pred EEECCC----------CceeEEEcccCCCeeEEEEecCC-CEEEEEeCCCCEEEEEcCCCeEEEEee---------CCCC
Q 009597 354 QWDMNT----------KEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYIS---------EPHM 413 (531)
Q Consensus 354 iwd~~t----------~~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~---------~~~~ 413 (531)
+||+.. .+.+..+..|...|..|+..|++ +.|.+++.||+|+-+|++.+.....-. .+..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999974 23456678899999999999988 789999999999999998753321111 0122
Q ss_pred CCccEEEEeC-CCCEEEEEEcCCeEEEEEcCCcce-e-------c-------eeee-ecCCc-c-----ccc---eEEEE
Q 009597 414 HSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQ-L-------N-------KKKR-FAGHI-V-----AGY---ACQVN 467 (531)
Q Consensus 414 ~~v~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~-~-------~-------~~~~-~~~~~-~-----~~~---v~~l~ 467 (531)
-...|+.++| +..+|++|+.|-..++||.+.... . . .+.. ..+|. . ..+ ++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 3467899999 567899999999999999542110 0 0 0111 12222 0 111 44578
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 009597 468 FSPDGRFVMSGDGEGKCWFWDWKSCKVFR 496 (531)
Q Consensus 468 ~spdg~~l~sgs~dg~I~iwd~~~~~~~~ 496 (531)
|+|+|.-|++.-..-.|+++|+..++...
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 99999877776666689999998766543
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=8.4e-15 Score=153.39 Aligned_cols=259 Identities=15% Similarity=0.198 Sum_probs=179.8
Q ss_pred eeeeeecccC-eeeEEecCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcE-----EEEccCCCcceE--EEEcc
Q 009597 265 HVEDKSTFHG-KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV-----IRTFSTGKIPYV--VKLNP 335 (531)
Q Consensus 265 ~i~~~~~~~~-~~~~~l~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~-----i~~~~~~~~~~~--~~~~~ 335 (531)
.+.+|+.... .+...|. -...|+|++|+| +..+|+.|.++|+|.+||+..+.. +......+...+ +.+..
T Consensus 223 ~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred eEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 6778876554 4555554 467899999999 577899999999999999987654 222233444444 44443
Q ss_pred CCCCCcEEEEeeCCCeEEEEECCCCce-eE----EEc-------ccCCCeeEEEEec-CCCEEEEEeCCCCEEEEE---c
Q 009597 336 DDDKQNILLAGMSDKKIVQWDMNTKEI-TQ----EYD-------QHLGAVNTITFVD-SNRRFVTSSDDKSLRVWE---F 399 (531)
Q Consensus 336 ~~~~~~~l~sg~~dg~I~iwd~~t~~~-~~----~~~-------~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd---~ 399 (531)
...+ .-|++++.||.|..|+++.-.. +. ... .....++++.|.+ +...|+.|+++|.|.-=. .
T Consensus 302 ~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 302 NEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred cCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3333 5688999999999998864322 11 111 1224688999998 556799999999887632 2
Q ss_pred CCCe----EEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcC-CcceeceeeeecCCccccceEEEEEcCCC-C
Q 009597 400 GIPV----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDG-R 473 (531)
Q Consensus 400 ~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~ 473 (531)
+... ........|.++|.++.++|=+..++..+.|-+|+||... ....+ ..+..+ ..++.+++|||.. .
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl---~~~~~~--~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL---LSLDSS--PDYVTDVAWSPTRPA 455 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc---hhhhhc--cceeeeeEEcCcCce
Confidence 2222 1122233578899999999965555554559999999876 33222 223333 3558899999964 5
Q ss_pred EEEEEeCCCcEEEEECCC--CeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 474 FVMSGDGEGKCWFWDWKS--CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 474 ~l~sgs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.++++..+|.|.|||+.. ..++.+.+.+......+.|++ .+.+|+.|...|.|.+|+
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEE
Confidence 677888999999999864 456666666666667777777 788999999999999885
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.9e-15 Score=146.86 Aligned_cols=193 Identities=20% Similarity=0.265 Sum_probs=149.5
Q ss_pred eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEe
Q 009597 329 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 408 (531)
Q Consensus 329 ~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 408 (531)
.++++..++ ..+++|+.||++++|+..+...+.....|.+.|.++.|+||++.|++.+.| ..+||+++++..+...
T Consensus 148 k~vaf~~~g---s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDG---SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCC---CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 566666643 579999999999999988888888888899999999999999999999999 8999999999666555
Q ss_pred e-CCCCCCccEEEEeCCC---C--EEEEEEcCCeEEEEEcCCcce---eceeeeecCCccccceEEEEEcCCCCEEEEEe
Q 009597 409 S-EPHMHSMPSISLHPNT---N--WLAAQSLDNQILIYSTRERFQ---LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 479 (531)
Q Consensus 409 ~-~~~~~~v~~v~~sp~~---~--~l~s~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 479 (531)
. ......+..+.|+.++ . +++....-+.|+.|++..... +...+....+ ..|.+++.|++|++++.|+
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~---~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF---KSISSLAVSDDGKFLALGT 300 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc---CcceeEEEcCCCcEEEEec
Confidence 4 2234456778888766 3 333334446677777654322 1111111222 3488899999999999999
Q ss_pred CCCcEEEEECCCCeEEEEee-ccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 480 GEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 480 ~dg~I~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
.||.|-|++..+.+.++..+ +|...|+.+.|+| +.+.+++.+.|..+.|
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAV 350 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeE
Confidence 99999999999998887775 8999999999999 7788888888877655
No 186
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=1.6e-14 Score=143.76 Aligned_cols=220 Identities=17% Similarity=0.271 Sum_probs=155.5
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEE-----EEccCCCcceEEEEc--cCCCCCcEEEEeeCCCeEEEEECC
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI-----RTFSTGKIPYVVKLN--PDDDKQNILLAGMSDKKIVQWDMN 358 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i-----~~~~~~~~~~~~~~~--~~~~~~~~l~sg~~dg~I~iwd~~ 358 (531)
.++...++-.|.+|+-.- ...+.+|+...+..+ +.+-.+..+.+-.|. ...+++.-++.|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 344444444555554332 235788877643211 222233444555553 233445668899999999999987
Q ss_pred CCceeEEEc----ccCCCeeEEEEecC-CCEEEEEeCCCCEEEEEcCCC--------------eEE--------------
Q 009597 359 TKEITQEYD----QHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIP--------------VVI-------------- 405 (531)
Q Consensus 359 t~~~~~~~~----~h~~~I~~l~~sp~-~~~l~s~s~Dg~I~iwd~~~~--------------~~~-------------- 405 (531)
..+..+.+. .....|+||.|.|. ...|+.+-.+|.+.+||.... ...
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 644332221 13478999999994 456788888999999976311 000
Q ss_pred EEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEE
Q 009597 406 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 485 (531)
Q Consensus 406 ~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~ 485 (531)
..... ....|..++|+|+|++||+.+.||.++|||..+...+...+.+.+- ..|++|||||+||++|++|.-|.
T Consensus 284 ~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-----LLCvcWSPDGKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 284 ARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-----LLCVCWSPDGKYIVTGGEDDLVT 357 (636)
T ss_pred ceeEe-ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc-----eEEEEEcCCccEEEecCCcceEE
Confidence 00100 2347889999999999999999999999999987666555555433 67799999999999999999999
Q ss_pred EEECCCCeEEEEeeccCCcEEEEEEec
Q 009597 486 FWDWKSCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 486 iwd~~~~~~~~~~~~h~~~V~~v~~~p 512 (531)
||.+...+++..-++|...|..|+|.|
T Consensus 358 VwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 358 VWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999984
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=2.7e-14 Score=149.65 Aligned_cols=222 Identities=16% Similarity=0.253 Sum_probs=167.1
Q ss_pred CeEEEEeCCCC-cEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCce--eE----EEcccCCCeeEEEE
Q 009597 306 KNIKYWDTETG-QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--TQ----EYDQHLGAVNTITF 378 (531)
Q Consensus 306 g~I~vWd~~t~-~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~--~~----~~~~h~~~I~~l~~ 378 (531)
+.+.||++... .....+.....+.++.|++..+ ++++.|+.+|.|.+||++.+.. .. ....|..+++.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999775 6667777778888888888765 7999999999999999987654 22 22458899999999
Q ss_pred ecCCC--EEEEEeCCCCEEEEEcCCCeEEEEe------e-----CCCCCCccEEEEeC-CCCEEEEEEcCCeEEEEEcCC
Q 009597 379 VDSNR--RFVTSSDDKSLRVWEFGIPVVIKYI------S-----EPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRE 444 (531)
Q Consensus 379 sp~~~--~l~s~s~Dg~I~iwd~~~~~~~~~~------~-----~~~~~~v~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~ 444 (531)
..+.. -|++++.||.|..|+++.-...... . ......++++.|.+ +...|++|+.+|.|..-+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 87544 4999999999999998753221100 0 01234688999998 677899999999888743322
Q ss_pred cceec-----eeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeeccCCcEEEEEEecCCCCEE
Q 009597 445 RFQLN-----KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK-SCKVFRTLKCHEGVCIGCEWHPLEQSKV 518 (531)
Q Consensus 445 ~~~~~-----~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~l 518 (531)
..... ....+..| .+.+..+.++|=+..++..+.|.+++||... ...++..+..+...|++++|+|.....|
T Consensus 380 ~~~~~~~~~~~~~~~~~h--~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITH--IGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred Cccccccccccccccccc--CcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 21111 11223333 4668889999977666555559999999988 7778888888888899999999888899
Q ss_pred EEEeCCCCEEeeC
Q 009597 519 ATCGWDGLIKYWD 531 (531)
Q Consensus 519 ~t~s~Dg~I~iWD 531 (531)
+++..||.|.+||
T Consensus 458 ~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 458 ATVDGDGNLDIWD 470 (555)
T ss_pred EEEcCCCceehhh
Confidence 9999999999998
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.6e-15 Score=139.35 Aligned_cols=187 Identities=17% Similarity=0.305 Sum_probs=148.3
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEec--CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC-C-CCCc
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD--SNRRFVTSSDDKSLRVWEFGIPVVIKYISEP-H-MHSM 416 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp--~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~-~~~v 416 (531)
..++++.+.|.|++||..+++.+..++++...++.+.|.. ....+++|+.||+|++||++.......+... + ..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5799999999999999999999999999999999999987 5678999999999999999987655444332 2 2466
Q ss_pred cEEEEeCCCCEEEEEE----cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 009597 417 PSISLHPNTNWLAAQS----LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 417 ~~v~~sp~~~~l~s~s----~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~~ 491 (531)
.+++.+-.++.+++|+ .+-.|.+||+|...++. -.....| ...|+++.|+| +-++|++|+.||.|.|||++.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-~~~~eSH--~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL-RQLNESH--NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchh-hhhhhhc--cCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 7777776888888876 45689999999876531 1223445 45699999999 467899999999999999875
Q ss_pred Ce----EEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 492 CK----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 492 ~~----~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.. ++..+ .|...|.++.|+...-..|.+-+..++..+|+
T Consensus 198 d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 198 DNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred CcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 42 23333 46778999999985545788888899999985
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=7.9e-15 Score=134.28 Aligned_cols=236 Identities=17% Similarity=0.228 Sum_probs=174.7
Q ss_pred HHHHhhhhccCCCCCCCceeeeeecccCeeeEEec-CccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE----
Q 009597 247 EYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT---- 321 (531)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~---- 321 (531)
++.....+. +..|...|.+..|...+.+.+..+. .|...|+.+.--|++ .|.+-+.|+.+.+|++.-+..+..
T Consensus 19 s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~~i~i~Si~ 96 (323)
T KOG0322|consen 19 SVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSAFISIHSIV 96 (323)
T ss_pred ehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEccCcceEEEeeee
Confidence 333444444 5567888999999999999999998 578899999999974 588999999999999865321110
Q ss_pred ----------cc--------------------------------------CCCcceEEEE--ccCCCCCcEEEEeeCCCe
Q 009597 322 ----------FS--------------------------------------TGKIPYVVKL--NPDDDKQNILLAGMSDKK 351 (531)
Q Consensus 322 ----------~~--------------------------------------~~~~~~~~~~--~~~~~~~~~l~sg~~dg~ 351 (531)
+. ..+....+++ .......-++++|..+|.
T Consensus 97 ~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsgh 176 (323)
T KOG0322|consen 97 VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGH 176 (323)
T ss_pred ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCe
Confidence 00 0001111222 222233457889999999
Q ss_pred EEEEECCCCc----------eeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC--eE-EEEeeCCCCCCccE
Q 009597 352 IVQWDMNTKE----------ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VV-IKYISEPHMHSMPS 418 (531)
Q Consensus 352 I~iwd~~t~~----------~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~--~~-~~~~~~~~~~~v~~ 418 (531)
|.+||+.++. .+..+..|..+|.++.+.+.-..=++|+.+..+..|.+... .. +.....-..-.|..
T Consensus 177 vv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~g 256 (323)
T KOG0322|consen 177 VVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSG 256 (323)
T ss_pred EEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccc
Confidence 9999999873 33445669999999999987777788888889999988643 11 11111113446888
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009597 419 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 489 (531)
Q Consensus 419 v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 489 (531)
+.+-|+++.+++++.|+.|+||+.++...+ ..+.-|. ..+++++|+|+..++++++.|+.|-+|++
T Consensus 257 vrIRpD~KIlATAGWD~RiRVyswrtl~pL---AVLkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 257 VRIRPDGKILATAGWDHRIRVYSWRTLNPL---AVLKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEccCCcEEeecccCCcEEEEEeccCCch---hhhhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999987555 4455564 55899999999999999999999999986
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.2e-14 Score=144.91 Aligned_cols=202 Identities=16% Similarity=0.259 Sum_probs=147.2
Q ss_pred HHHHHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEe-cCccCceEEEEEcc--CCCEEEEEecCCeEEEEeCCCCcE
Q 009597 242 KKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTY-MGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQV 318 (531)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~gH~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~~~ 318 (531)
...+.+++|..++.++++|+.+-.+.+|+.++.++++.+ .||...|.++.|-| +.+.++||..|..|+|+|+...+.
T Consensus 50 ~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~ 129 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE 129 (758)
T ss_pred cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence 345678999999999999999999999999999998887 68999999999999 567899999999999999975221
Q ss_pred ----------EEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCce----------eEEEcccCCCeeEEEE
Q 009597 319 ----------IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI----------TQEYDQHLGAVNTITF 378 (531)
Q Consensus 319 ----------i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~----------~~~~~~h~~~I~~l~~ 378 (531)
+..+ ..+...+-.+...+...+.+.+++.||+|+.+|++.... +..+....-...|++.
T Consensus 130 ~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lti 208 (758)
T KOG1310|consen 130 GGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTI 208 (758)
T ss_pred cccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeee
Confidence 1111 112222333334444558999999999999999976321 1122223345678999
Q ss_pred ecC-CCEEEEEeCCCCEEEEEcCCC------------------eEEEEeeCCCCC-----------CccEEEEeCCCCEE
Q 009597 379 VDS-NRRFVTSSDDKSLRVWEFGIP------------------VVIKYISEPHMH-----------SMPSISLHPNTNWL 428 (531)
Q Consensus 379 sp~-~~~l~s~s~Dg~I~iwd~~~~------------------~~~~~~~~~~~~-----------~v~~v~~sp~~~~l 428 (531)
+|. ..+|++|+.|-..++||.+.. .++.++...|.. .++-++|+|+|.-|
T Consensus 209 sp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtEl 288 (758)
T KOG1310|consen 209 SPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTEL 288 (758)
T ss_pred cCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEE
Confidence 995 457899999999999995310 123444333321 14568899999988
Q ss_pred EEEEcCCeEEEEEcCC
Q 009597 429 AAQSLDNQILIYSTRE 444 (531)
Q Consensus 429 ~s~s~Dg~I~iwd~~~ 444 (531)
++.-..-.|+++|+..
T Consensus 289 Lvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 289 LVSWGGEHVYLFDVNE 304 (758)
T ss_pred EEeeCCeEEEEEeecC
Confidence 8877777888988754
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=4.6e-14 Score=152.34 Aligned_cols=278 Identities=17% Similarity=0.239 Sum_probs=202.2
Q ss_pred hhhhccCCCCCCCceeeeeeccc-------CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC-------
Q 009597 251 KKEEKGNAGGEKGEHVEDKSTFH-------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG------- 316 (531)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~------- 316 (531)
+++....++++.+|+|++|+... .++..+|.--...+.++.+.+.+..+|.++.||.|++.+++..
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 34447889999999999998642 3555667666789999999999999999999999999998762
Q ss_pred cEEEEccCCCcceEEEEcc-CCCCC-cEEEEeeCCCeEEEEECCCCceeEEEc--ccCCCeeEEEEecCCCEEEEEeCCC
Q 009597 317 QVIRTFSTGKIPYVVKLNP-DDDKQ-NILLAGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSDDK 392 (531)
Q Consensus 317 ~~i~~~~~~~~~~~~~~~~-~~~~~-~~l~sg~~dg~I~iwd~~t~~~~~~~~--~h~~~I~~l~~sp~~~~l~s~s~Dg 392 (531)
.+.+.........++.++. ....+ ..++.+..-+.|..||+++......++ ...+.|++++.+|.+.++++|+..|
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc
Confidence 2223333333344444432 22222 488899999999999998876555443 3458999999999999999999999
Q ss_pred CEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCC---CEEEEEE--cCCeEEEEEcCCcceeceeeeec------------
Q 009597 393 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT---NWLAAQS--LDNQILIYSTRERFQLNKKKRFA------------ 455 (531)
Q Consensus 393 ~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~---~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~------------ 455 (531)
.+.+||++-...+.....++..++..+..+|-. ...++++ ..+.|.+|++.++.+...+..-.
T Consensus 1218 ~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~ 1297 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN 1297 (1431)
T ss_pred eEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc
Confidence 999999999999998888888999999988832 3444444 56889999998875443222110
Q ss_pred ----CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE------------------------------------
Q 009597 456 ----GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF------------------------------------ 495 (531)
Q Consensus 456 ----~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~------------------------------------ 495 (531)
.+... ....++..-+.++++|+.|..|+.||.......
T Consensus 1298 ~~~kp~~~~--~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~ 1375 (1431)
T KOG1240|consen 1298 DARKPDSLA--GISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQ 1375 (1431)
T ss_pred cCCCCCccc--ceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhh
Confidence 11111 222344455678999999999999996432110
Q ss_pred ------------EEe--------eccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 496 ------------RTL--------KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 496 ------------~~~--------~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
..+ ..|..+|+++++...+..+|++++.||.|+||
T Consensus 1376 ~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1376 QTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred hhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence 000 13677888888887777799999999999999
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=7.1e-14 Score=150.88 Aligned_cols=251 Identities=17% Similarity=0.237 Sum_probs=173.8
Q ss_pred cCeeeEEecCccCceEEEEEccC-CCEEEEEecCCeEEEEeCCCC-------cEEEEcc-CCCcceEEEEccCCCCCcEE
Q 009597 273 HGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG-------QVIRTFS-TGKIPYVVKLNPDDDKQNIL 343 (531)
Q Consensus 273 ~~~~~~~l~gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~-------~~i~~~~-~~~~~~~~~~~~~~~~~~~l 343 (531)
.|..+..+..|+..|..++.++. +.+|+|||.||+|++|++..- ....++. .+....++.+.... +.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~---~~~ 1113 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG---DQF 1113 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC---CeE
Confidence 57899999999999999999875 489999999999999998531 2333443 44555666666644 569
Q ss_pred EEeeCCCeEEEEECCCC-------ceeEEEcccC-CCe-eEEEEec-CC-CEEEEEeCCCCEEEEEcCCCeEEEEee-CC
Q 009597 344 LAGMSDKKIVQWDMNTK-------EITQEYDQHL-GAV-NTITFVD-SN-RRFVTSSDDKSLRVWEFGIPVVIKYIS-EP 411 (531)
Q Consensus 344 ~sg~~dg~I~iwd~~t~-------~~~~~~~~h~-~~I-~~l~~sp-~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~ 411 (531)
++++.||.|++.++.-. ...+..+.+. +.+ ..-+|.. .+ ..++.+..-+.|..||++.......+. ..
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998652 1122222222 233 3333433 22 368888888999999999875554443 23
Q ss_pred CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC---CCCEEEEEe--CCCcEEE
Q 009597 412 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGD--GEGKCWF 486 (531)
Q Consensus 412 ~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp---dg~~l~sgs--~dg~I~i 486 (531)
..+.|++++.+|.+++++.|+..|.+.+||+|-+..+.... +.. ...+..+..+| .....++++ ..+.|-+
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~---~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPA---RAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc-Ccc---cCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 45679999999999999999999999999999876554333 222 24455555554 345555554 4678999
Q ss_pred EECCCCeEEEEeecc-------------------CCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 487 WDWKSCKVFRTLKCH-------------------EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 487 wd~~~~~~~~~~~~h-------------------~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|++.+|.+...+-.. .-....+.+.. .+.++++|+.|..|+.||
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeecc
Confidence 999988765555432 11122233333 566899999999999998
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.2e-13 Score=145.31 Aligned_cols=262 Identities=18% Similarity=0.256 Sum_probs=184.1
Q ss_pred CCceeeeeecccCeeeEEecCccCceEEEEEccCC---CEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCC
Q 009597 262 KGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDG---TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 338 (531)
Q Consensus 262 ~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg---~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~ 338 (531)
-+..|.++++.++.|++.+.+|..+++.+.+.|.. .++++++.||.|++||...+..++++...-.+.++.+.+..-
T Consensus 35 ~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a 114 (792)
T KOG1963|consen 35 TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQA 114 (792)
T ss_pred eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHh
Confidence 34578999999999999999999999999999854 467899999999999999999999998777766655532111
Q ss_pred C-CcEEEEeeCCCeE------------EEEECCCC--ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCe
Q 009597 339 K-QNILLAGMSDKKI------------VQWDMNTK--EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 403 (531)
Q Consensus 339 ~-~~~l~sg~~dg~I------------~iwd~~t~--~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~ 403 (531)
. ...+..+..+..+ +-+.+.+. .....+..|.. -.+|.+++.+.+....-. ..+.+|......
T Consensus 115 ~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~ 192 (792)
T KOG1963|consen 115 DISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHT 192 (792)
T ss_pred CccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEe-eeEEEEEecccc
Confidence 1 1112222222211 11111110 00111122222 467888888877666654 458899887743
Q ss_pred E---EEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC-cceeceeeeecCCccccceEEEEEcCCCCEEEEEe
Q 009597 404 V---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 479 (531)
Q Consensus 404 ~---~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 479 (531)
. ...+...|...+++.++||++++++++..||+|.+|.--. ...-.....+.-| ...|.+++|+++|.+|++|+
T Consensus 193 ~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH--~~~V~~L~fS~~G~~LlSGG 270 (792)
T KOG1963|consen 193 KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH--HDEVNSLSFSSDGAYLLSGG 270 (792)
T ss_pred eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec--ccccceeEEecCCceEeecc
Confidence 1 1122234666789999999999999999999999996433 1111222334444 35589999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 480 GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 480 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
..|.+.+|.+.+++ -.-+.--.++|..+.++| ++.+.+.+..|+.|.+
T Consensus 271 ~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 271 REGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHL 318 (792)
T ss_pred cceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence 99999999999988 334455677999999999 6777777777988865
No 194
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=3.4e-13 Score=126.86 Aligned_cols=178 Identities=13% Similarity=0.269 Sum_probs=146.3
Q ss_pred ceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCC-CCcEEEEccCCC-cceEEEEccCCCCCc
Q 009597 264 EHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFSTGK-IPYVVKLNPDDDKQN 341 (531)
Q Consensus 264 ~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~-t~~~i~~~~~~~-~~~~~~~~~~~~~~~ 341 (531)
..+.+|+....+++.++. -..+|.+|.+.++ +|++.- .+.|.||... +.+.++.+.... +...+++.+.....-
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 468899998999999887 6789999999876 466665 5799999987 566777776554 334666666665544
Q ss_pred EEEEeeCCCeEEEEECCCCce--eEEEcccCCCeeEEEEecCCCEEEEEeCCCC-EEEEEcCCCeEEEEeeCCC-CCCcc
Q 009597 342 ILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDSNRRFVTSSDDKS-LRVWEFGIPVVIKYISEPH-MHSMP 417 (531)
Q Consensus 342 ~l~sg~~dg~I~iwd~~t~~~--~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~~-~~~v~ 417 (531)
+.+-|-.-|.|.|-|+...+. ...+..|...|.|++.+.+|.+++|+|..|+ |||||..++..+..+..+. ...|.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 444567789999999977665 5788999999999999999999999999997 8999999999998887643 44699
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEcCCc
Q 009597 418 SISLHPNTNWLAAQSLDNQILIYSTRER 445 (531)
Q Consensus 418 ~v~~sp~~~~l~s~s~Dg~I~iwd~~~~ 445 (531)
+++|+|+..+|++.|..|+|.||.++..
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998763
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.9e-15 Score=145.59 Aligned_cols=197 Identities=15% Similarity=0.228 Sum_probs=158.2
Q ss_pred HHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC
Q 009597 247 EYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK 326 (531)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~ 326 (531)
.++...++..++++..++.+++|+......+.....|.+.|.+|.|+|||+.|++.+.| ..+||+++++.++.......
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFS 227 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence 34556667788899999999999998999999999999999999999999999999999 99999999998887776433
Q ss_pred cc---eEEEEccCCCCCcEEEEe--eCCCeEEEEECCCCce-----eEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEE
Q 009597 327 IP---YVVKLNPDDDKQNILLAG--MSDKKIVQWDMNTKEI-----TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 396 (531)
Q Consensus 327 ~~---~~~~~~~~~~~~~~l~sg--~~dg~I~iwd~~t~~~-----~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~i 396 (531)
.. ..+.|..++....+++++ ...+.|+.|++....- ..+.......|++++.+++|++++.|+.||.|-|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 33 334555544333443333 3446677776643221 1122223357999999999999999999999999
Q ss_pred EEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 009597 397 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444 (531)
Q Consensus 397 wd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~ 444 (531)
++..+.+.+..+...|...|+.+.|+|+.+++++.+.+..+.|..+.-
T Consensus 308 ~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 308 YDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999999999999999999999999999887754
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=2.9e-15 Score=146.69 Aligned_cols=229 Identities=12% Similarity=0.183 Sum_probs=189.3
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEE
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 365 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~ 365 (531)
.-..+.++.+|++|+.|+.-|.|-.+|..++++...+.....+..+.|.... .+++......++|||- .|..+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne----q~~AVAQK~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE----QFFAVAQKKYVYVYDN-NGTELHC 205 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcch----HHHHhhhhceEEEecC-CCcEEee
Confidence 4577899999999999999999999999999999999888777777766543 2666677889999995 4677777
Q ss_pred EcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCc
Q 009597 366 YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 445 (531)
Q Consensus 366 ~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~ 445 (531)
+..| ..|..+.|.|..-+|++++..|.++.-|+.+++.+..+.. ..+.+..++-+|-.-.+-+|...|+|.+|.-.+.
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 7766 6789999999999999999999999999999988877765 5677888899999999999999999999999887
Q ss_pred ceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCC
Q 009597 446 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 525 (531)
Q Consensus 446 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg 525 (531)
..+..+. .| .+.|.+|++.++|+|+++.+.|..++|||++....+.++.. .-+...++++. .+ ++.+|...
T Consensus 284 ePLvKiL---cH--~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq-kg--lLA~~~G~ 354 (545)
T KOG1272|consen 284 EPLVKIL---CH--RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ-KG--LLALSYGD 354 (545)
T ss_pred chHHHHH---hc--CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc-cc--ceeeecCC
Confidence 6664433 34 35588899999999999999999999999999887777664 33456788876 33 55566666
Q ss_pred CEEee
Q 009597 526 LIKYW 530 (531)
Q Consensus 526 ~I~iW 530 (531)
.|.||
T Consensus 355 ~v~iw 359 (545)
T KOG1272|consen 355 HVQIW 359 (545)
T ss_pred eeeee
Confidence 78888
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=6e-13 Score=127.45 Aligned_cols=233 Identities=12% Similarity=0.174 Sum_probs=171.6
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC--CeEEEEECCCC
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTK 360 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~I~iwd~~t~ 360 (531)
....|..+.|+.+...|..|+.|| .+++..+........ ......++...+.. .+++..+.+ ..+++++++.+
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccC
Confidence 345677888999998888899887 578877654331111 12223344444433 244444433 46999999988
Q ss_pred ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC--CCCCccEEEEeCCCCEEEEEE--cCCe
Q 009597 361 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP--HMHSMPSISLHPNTNWLAAQS--LDNQ 436 (531)
Q Consensus 361 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~--~~~~v~~v~~sp~~~~l~s~s--~Dg~ 436 (531)
..+..+. ....|.++.++ .++|+++-.+. |.|||++..+.++.+... +...+.++++++.+.+|+.-+ ..|.
T Consensus 79 ~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred ceEEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 8888776 45778888885 45677776655 999999999998888653 445566666666677887543 4589
Q ss_pred EEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEeecc--CCcEEEEEEecC
Q 009597 437 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-CWFWDWKSCKVFRTLKCH--EGVCIGCEWHPL 513 (531)
Q Consensus 437 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~-I~iwd~~~~~~~~~~~~h--~~~V~~v~~~p~ 513 (531)
|.|||+.+-... ..+..| .+.+-+++|+++|.+||+++..|+ |||+.+.+|+.+..|+-- ...|.+++|+|
T Consensus 155 V~l~d~~nl~~v---~~I~aH--~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~- 228 (391)
T KOG2110|consen 155 VVLFDTINLQPV---NTINAH--KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP- 228 (391)
T ss_pred EEEEEcccceee---eEEEec--CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-
Confidence 999999876444 445556 466888999999999999999997 799999999999999732 23688999999
Q ss_pred CCCEEEEEeCCCCEEee
Q 009597 514 EQSKVATCGWDGLIKYW 530 (531)
Q Consensus 514 ~~~~l~t~s~Dg~I~iW 530 (531)
+..+|++.|..++|.||
T Consensus 229 ds~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIF 245 (391)
T ss_pred CCCeEEEecCCCeEEEE
Confidence 78899999999999987
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.3e-13 Score=122.37 Aligned_cols=232 Identities=12% Similarity=0.129 Sum_probs=160.7
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCCC---------c-EEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEE
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTETG---------Q-VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 355 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~---------~-~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iw 355 (531)
.|.+-+++|.+++|+.|..+|+|-+..+.+. + .+-.+ ..+...+..+.+.. .+|++|+ ||.|+-|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d---~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHD---DFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeeh---hheeecc-CceEEEe
Confidence 4666789999999999999999999987542 1 22222 22322233333322 3466655 5999999
Q ss_pred ECCCCce------eEE--Ecc-----cCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEe
Q 009597 356 DMNTKEI------TQE--YDQ-----HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 422 (531)
Q Consensus 356 d~~t~~~------~~~--~~~-----h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~s 422 (531)
..+.... +.+ ..- .-..|+++...|..+.++.++.|+.++-||+++++....+. +|...|.++..-
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R 165 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGR 165 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeec
Confidence 7653221 111 111 22468999999988888888899999999999998777665 599999999986
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCC-----ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 009597 423 PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH-----IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 497 (531)
Q Consensus 423 p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~ 497 (531)
.....+++|+.||+++|||+++.+.+..+..++.. ....+|-+++ -+..+|++|+. ..+.+|.+++.++...
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSSESTCV 242 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-CceeEEeccCCCceEE
Confidence 55667899999999999999998877655443322 1234554444 45668887765 4799999999888777
Q ss_pred eeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 498 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 498 ~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+. -...+..+.|.. ..++++|..+.|.-|
T Consensus 243 fp-ipa~v~~v~F~~---d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 243 FP-IPARVHLVDFVD---DCVLIGGEGNHVQSY 271 (325)
T ss_pred Ee-cccceeEeeeec---ceEEEeccccceeee
Confidence 76 334567788864 456667655555444
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=1.9e-14 Score=143.13 Aligned_cols=220 Identities=15% Similarity=0.282 Sum_probs=153.3
Q ss_pred CccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEE--EccCCCcceEEEEcc----CCCCCcEEEEeeCCCeEEEE
Q 009597 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFSTGKIPYVVKLNP----DDDKQNILLAGMSDKKIVQW 355 (531)
Q Consensus 282 gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~--~~~~~~~~~~~~~~~----~~~~~~~l~sg~~dg~I~iw 355 (531)
.|...|.|+.|+.+...+.+++ |..+.+|..-+..... .+.....+......+ .......|+.+++||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666778999988776555555 5566666443322222 221122222222111 11233579999999999998
Q ss_pred ECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCC
Q 009597 356 DMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 435 (531)
Q Consensus 356 d~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg 435 (531)
+ +.++....+..|.++|.+-.|+|+|.-|++++.||.|+||.- ++.....+ .....+|.|++|.|+.+.++-+ ..+
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S~~vl~c-~g~ 166 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNSNSIVFC-QGG 166 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCCCceEEe-cCC
Confidence 7 457777888999999999999999999999999999999984 33322222 2366789999999987665553 345
Q ss_pred eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEec
Q 009597 436 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 436 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p 512 (531)
.+.|=.+.....+ .....| .+.|.++.|++...++++|++|-..+|||- .|..+..-..|.-+|++++|.|
T Consensus 167 h~~IKpL~~n~k~---i~WkAH--DGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 167 HISIKPLAANSKI---IRWRAH--DGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred eEEEeecccccce---eEEecc--CcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecc
Confidence 6666666544322 345556 577999999999999999999999999994 5666666667777777777777
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.59 E-value=2e-14 Score=145.20 Aligned_cols=231 Identities=14% Similarity=0.212 Sum_probs=162.3
Q ss_pred CCCEEE--EEecCCeEEEEeCCCC-c----EEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCC-------
Q 009597 295 DGTKFL--TASYDKNIKYWDTETG-Q----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK------- 360 (531)
Q Consensus 295 dg~~l~--s~s~Dg~I~vWd~~t~-~----~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~------- 360 (531)
+..+++ -++..|.|-|+++... + .+..+.++..+..+.|.++ +...|++++.||.|++|.+..+
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEM 667 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccC
Confidence 444444 2455789999998642 2 2334444444444444444 4478999999999999998654
Q ss_pred ceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEE
Q 009597 361 EITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 439 (531)
Q Consensus 361 ~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~i 439 (531)
++...+..|...|.++.|+| -...|++++.|-+|++||+........+. +|...|..++|+|+|+.+++.+.||+|++
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCcceeeeecCceEEE
Confidence 34567888999999999999 45679999999999999999987766665 59999999999999999999999999999
Q ss_pred EEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC----CcEEEEECCCC--eEEEEeeccCC-cEEEEEEec
Q 009597 440 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE----GKCWFWDWKSC--KVFRTLKCHEG-VCIGCEWHP 512 (531)
Q Consensus 440 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d----g~I~iwd~~~~--~~~~~~~~h~~-~V~~v~~~p 512 (531)
|.-+++... +..-.+.. ...--.|.|..+|++|++.+.| ..|.+||..+- ..+.+..-... .+.--.+.+
T Consensus 747 y~Prs~e~p--v~Eg~gpv-gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~ 823 (1012)
T KOG1445|consen 747 YEPRSREQP--VYEGKGPV-GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDY 823 (1012)
T ss_pred eCCCCCCCc--cccCCCCc-cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccC
Confidence 998876433 22222222 2333458899999999887754 46888887642 33333321111 111223445
Q ss_pred CCCCEEEEEeCCCCEEeeC
Q 009597 513 LEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 513 ~~~~~l~t~s~Dg~I~iWD 531 (531)
+.+-+|+||-.|..|.+|.
T Consensus 824 Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred CCceEEEecCCCceEEEEE
Confidence 4556788888898888763
No 201
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.4e-14 Score=145.24 Aligned_cols=248 Identities=14% Similarity=0.218 Sum_probs=169.9
Q ss_pred HHHHhhhhccCCCCCCCceeeeeecc--------cCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC--
Q 009597 247 EYAKKKEEKGNAGGEKGEHVEDKSTF--------HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-- 316 (531)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-- 316 (531)
.+...+-+..+++++.++.+.+|... .-+++.+|.+|.++|.|+++.+++..+++|+.||+|+.|++...
T Consensus 299 ~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC
Confidence 34444555566788899999988762 34788999999999999999999999999999999999965421
Q ss_pred ----c---EEEEccCCCc--ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccC--CCeeEEEEecCC-CE
Q 009597 317 ----Q---VIRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL--GAVNTITFVDSN-RR 384 (531)
Q Consensus 317 ----~---~i~~~~~~~~--~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~--~~I~~l~~sp~~-~~ 384 (531)
. .+...-.++. ++.+.++... ..|++++.||++++|+...... .+|.... +.-.++.+.... ..
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~---~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~ 454 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTK---DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAH 454 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccc---cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHh
Confidence 1 1222223333 3345555543 3599999999999999876655 3333222 233445554322 12
Q ss_pred EEEEeCCCCEEEEEcCCCeEEEEeeC---C---CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCc
Q 009597 385 FVTSSDDKSLRVWEFGIPVVIKYISE---P---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 458 (531)
Q Consensus 385 l~s~s~Dg~I~iwd~~~~~~~~~~~~---~---~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 458 (531)
.++...-+.-.++++.....+..+.. + ....+..+.++|+..+.+++..|+.|+++|..++..+. ....|.
T Consensus 455 ~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~---s~~a~~ 531 (577)
T KOG0642|consen 455 SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH---SMVAHK 531 (577)
T ss_pred hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch---heeecc
Confidence 22222233333444444433333321 1 12346788899999999999999999999998876553 233343
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCC
Q 009597 459 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 503 (531)
Q Consensus 459 ~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 503 (531)
..++++++.|+|-+|++|+.||.+++|.+....++....+|..
T Consensus 532 --~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 532 --DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred --ceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 4488899999999999999999999999988777777776653
No 202
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=8.6e-13 Score=137.98 Aligned_cols=234 Identities=12% Similarity=0.109 Sum_probs=158.6
Q ss_pred eeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEec---CCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCc
Q 009597 265 HVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 341 (531)
Q Consensus 265 ~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~---Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (531)
.+++++.. +...+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++...............|++++ ..
T Consensus 180 ~l~~~d~d-g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG--~~ 256 (429)
T PRK03629 180 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG--SK 256 (429)
T ss_pred eEEEEcCC-CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC--CE
Confidence 56777654 3334455557788999999999999886543 457999999988654433222333345666644 34
Q ss_pred EEEEeeCCC--eEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCC-CCEEEE--EcCCCeEEEEeeCCCCCCc
Q 009597 342 ILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-KSLRVW--EFGIPVVIKYISEPHMHSM 416 (531)
Q Consensus 342 ~l~sg~~dg--~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~D-g~I~iw--d~~~~~~~~~~~~~~~~~v 416 (531)
++++.+.+| .|++||+.+++..+.. .+...+....|+|+|+.|+.++.+ +...|| |+..+... .+.. .....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCc
Confidence 555555555 5899999988765443 344567889999999998877764 444444 66665443 3322 33446
Q ss_pred cEEEEeCCCCEEEEEEcC---CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCc---EEEEECC
Q 009597 417 PSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK---CWFWDWK 490 (531)
Q Consensus 417 ~~v~~sp~~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~---I~iwd~~ 490 (531)
....|+|+|++|+..+.+ ..|.+||+.++... . +... .......|+|||++|+.++.++. ++++++
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~---Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~- 405 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V---LTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST- 405 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-E---eCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-
Confidence 678999999999887654 35888998776422 1 1111 11234789999999999887764 677776
Q ss_pred CCeEEEEeeccCCcEEEEEEec
Q 009597 491 SCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 491 ~~~~~~~~~~h~~~V~~v~~~p 512 (531)
+++....+.+|.+.+...+|+|
T Consensus 406 ~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCeEECccCCCCcCCcccCC
Confidence 5666677888888899999998
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=2.1e-13 Score=128.26 Aligned_cols=240 Identities=18% Similarity=0.232 Sum_probs=179.1
Q ss_pred EecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc---EEEEccCC-CcceEEEEccCCCCCcEEEEeeCCCeEEE
Q 009597 279 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQ 354 (531)
Q Consensus 279 ~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~---~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 354 (531)
.|.--..+|+|.+|++|++.++.+.....|.||.....+ ..+++..+ .....+.+.+.. +.|++|+.|..-++
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s---nrIvtcs~drnayV 81 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS---NRIVTCSHDRNAYV 81 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC---CceeEccCCCCccc
Confidence 344446799999999999999999999999999887655 45555433 334556666644 56999999999999
Q ss_pred EECCC-C--ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeE---EEEeeCCCCCCccEEEEeCCCCEE
Q 009597 355 WDMNT-K--EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWL 428 (531)
Q Consensus 355 wd~~t-~--~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~l 428 (531)
|.... + ++...+..+..+.+++.|+|.++.|++||.-+.|.||-++.... .+.+..++...|.++.|+|++-+|
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 99843 2 45666778999999999999999999999999999998876432 345667788899999999999999
Q ss_pred EEEEcCCeEEEEEcCCcc--------------eeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-
Q 009597 429 AAQSLDNQILIYSTRERF--------------QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK- 493 (531)
Q Consensus 429 ~s~s~Dg~I~iwd~~~~~--------------~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~- 493 (531)
++|+.|+.++||..--+. ....+. .......+++..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm-~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM-SEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH-HhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 999999999999742110 000000 0111346889999999999999999999999999977654
Q ss_pred EEEEeeccCCcEEEEEEecCCCCEEEEEeCC
Q 009597 494 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 524 (531)
Q Consensus 494 ~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~D 524 (531)
.+..+....-+..++.|.. +. .++.++.|
T Consensus 241 ~v~~~~~~~lP~ls~~~is-e~-~vv~ag~~ 269 (361)
T KOG1523|consen 241 RVQSVATAQLPLLSVSWIS-EN-SVVAAGYD 269 (361)
T ss_pred hccchhhccCCceeeEeec-CC-ceeecCCC
Confidence 3444443346777777765 22 34444444
No 204
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.9e-13 Score=137.17 Aligned_cols=236 Identities=14% Similarity=0.159 Sum_probs=176.9
Q ss_pred ccCceEEEEEccCCCEE-EEEecCCeEEEEeCCCCcEEEEcc----------------------------C---------
Q 009597 283 HSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFS----------------------------T--------- 324 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l-~s~s~Dg~I~vWd~~t~~~i~~~~----------------------------~--------- 324 (531)
|...-+.|..+|||+|+ +||.+--.|++||+....+...-. .
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 77788999999999985 577788899999986543211000 0
Q ss_pred ---CCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC
Q 009597 325 ---GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 401 (531)
Q Consensus 325 ---~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~ 401 (531)
......++++ ... .-|++++....|+-++++.|..+..|....+.+++|..++...+|++|+.+|.|..||.+.
T Consensus 130 ~RIP~~GRDm~y~--~~s-cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 130 TRIPKFGRDMKYH--KPS-CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eecCcCCcccccc--CCC-ccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 0000111111 111 2266666677899999999999999998889999999999999999999999999999988
Q ss_pred CeEEEEeeCC-----C-----CCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC
Q 009597 402 PVVIKYISEP-----H-----MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 471 (531)
Q Consensus 402 ~~~~~~~~~~-----~-----~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 471 (531)
...+..+... + ...|+++.|+.+|-.+++|+.+|.|.|||++...++. ...|.....|..+.|.+.
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~----~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL----VKDHGYELPIKKLDWQDT 282 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee----ecccCCccceeeeccccc
Confidence 7655444321 1 2249999999999999999999999999999976653 345666677888999775
Q ss_pred --CCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEE
Q 009597 472 --GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 528 (531)
Q Consensus 472 --g~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~ 528 (531)
+..|++. ....++|||-.+|+....+..-. .+..+|+.| ++.+++++-.++.|.
T Consensus 283 ~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p-~sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 283 DQQNKVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCFVP-GSGMFFTANESSKMH 338 (703)
T ss_pred CCCceEEec-chHHhhhcccccCCceeeccccC-CcCceeeec-CCceEEEecCCCcce
Confidence 4455544 45689999999999998887443 489999999 777888887776654
No 205
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=2.2e-12 Score=131.33 Aligned_cols=269 Identities=19% Similarity=0.239 Sum_probs=176.0
Q ss_pred CCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCC
Q 009597 260 GEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 339 (531)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~ 339 (531)
...++.+.+.+..+.+.+.++..+...-..+.|+|||+++++++.||.|.++|+.+++.+.++..+..+..+.+++++.
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~- 90 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGK- 90 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTT-
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCC-
Confidence 3456788899998999999998765554567899999999999999999999999999999999999998888887543
Q ss_pred CcEEEEeeCCCeEEEEECCCCceeEEEccc-------CCCeeEEEEecCCCEEEEEeCC-CCEEEEEcCCCeEEEEeeCC
Q 009597 340 QNILLAGMSDKKIVQWDMNTKEITQEYDQH-------LGAVNTITFVDSNRRFVTSSDD-KSLRVWEFGIPVVIKYISEP 411 (531)
Q Consensus 340 ~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h-------~~~I~~l~~sp~~~~l~s~s~D-g~I~iwd~~~~~~~~~~~~~ 411 (531)
.++++....+.+.++|.++.++++.+... ...+..|..+|....++..-.| +.|.+.|+.....+......
T Consensus 91 -~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~ 169 (369)
T PF02239_consen 91 -YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK 169 (369)
T ss_dssp -EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred -EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec
Confidence 45555667999999999999999887543 3467888889988877766655 77888887765433322222
Q ss_pred CCCCccEEEEeCCCCEEEEE-EcCCeEEEEEcCCcceeceeee-----------e----------cCCcc----------
Q 009597 412 HMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKR-----------F----------AGHIV---------- 459 (531)
Q Consensus 412 ~~~~v~~v~~sp~~~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~-----------~----------~~~~~---------- 459 (531)
.........|+|++++++++ ...+.|.++|..++.....+.. + ..|..
T Consensus 170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~ 249 (369)
T PF02239_consen 170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD 249 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--
T ss_pred ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC
Confidence 44567789999999988775 4556888888877544322110 0 00000
Q ss_pred ------------------ccceEEEEEcCCCCEEEEE----eCCCcEEEEECCCCeEEEEeeccC-CcEEEEEEecCCCC
Q 009597 460 ------------------AGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQS 516 (531)
Q Consensus 460 ------------------~~~v~~l~~spdg~~l~sg----s~dg~I~iwd~~~~~~~~~~~~h~-~~V~~v~~~p~~~~ 516 (531)
.+.-.-+..+|++++|.+. ...+.|.++|.++.+.+.++.... ..+..+.|++ ++.
T Consensus 250 ~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~ 328 (369)
T PF02239_consen 250 PVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGK 328 (369)
T ss_dssp TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSS
T ss_pred ccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CCC
Confidence 0111226679999999988 456899999999998888886333 3588999999 555
Q ss_pred EEEEEeCCC--CEEeeC
Q 009597 517 KVATCGWDG--LIKYWD 531 (531)
Q Consensus 517 ~l~t~s~Dg--~I~iWD 531 (531)
.+..+.+++ .|.+||
T Consensus 329 ~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 329 EVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp EEEEEEE--TTEEEEEE
T ss_pred EEEEEEecCCCEEEEEE
Confidence 444444433 588886
No 206
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.58 E-value=1.7e-13 Score=132.52 Aligned_cols=225 Identities=19% Similarity=0.402 Sum_probs=163.3
Q ss_pred cCceEEEEEccCCC-EEEEEecCCeEEEEeCCCCc---------EEEEcc-CCCcceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 284 SKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQ---------VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 284 ~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~---------~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
..+|.++.|.+++. .|+||+.|..|+||.++.+. .+..+. +...+.++.|++. +.++++|+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~---gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD---GELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC---cCeeeecCCCceE
Confidence 45899999998765 89999999999999875432 122332 2334566666664 4689999999999
Q ss_pred EEEECC--------C--------CceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCc
Q 009597 353 VQWDMN--------T--------KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 416 (531)
Q Consensus 353 ~iwd~~--------t--------~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v 416 (531)
.+|-.. + ......+.+|...|..++|+|++.++++++.|.++++||+..+.....+. .|.+.+
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yv 168 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYV 168 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-cccccc
Confidence 999765 2 22355678899999999999999999999999999999999998877665 499999
Q ss_pred cEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceee------------------eecCCccccceEEEEEcCCCCEEEEE
Q 009597 417 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK------------------RFAGHIVAGYACQVNFSPDGRFVMSG 478 (531)
Q Consensus 417 ~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~------------------~~~~~~~~~~v~~l~~spdg~~l~sg 478 (531)
..++|.|-++++++-+.|...+++++.....+.... .+...........++|+|+|.+|++.
T Consensus 169 qgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred ceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 999999999999999999977777765543332221 12222223445568999999999986
Q ss_pred eC----CCc-----EEEEECCC-CeEEEEeeccCCcEEEEEEec
Q 009597 479 DG----EGK-----CWFWDWKS-CKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 479 s~----dg~-----I~iwd~~~-~~~~~~~~~h~~~V~~v~~~p 512 (531)
+. .+. .++++-+. .++...+.+...+...+.++|
T Consensus 249 ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 249 AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred cceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 52 222 35554332 244555555555666666655
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=3.4e-14 Score=141.28 Aligned_cols=189 Identities=18% Similarity=0.309 Sum_probs=146.5
Q ss_pred cCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEc-cCCCcceEEEEccCCCCCcEEEEeeCCCe
Q 009597 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKK 351 (531)
Q Consensus 273 ~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 351 (531)
.++..+....|.++|.|-.|+|||.-|+|++.||.|++|.- +|-...++ .....++|+.|.+++. +++++.+ +.
T Consensus 93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~--~vl~c~g--~h 167 (737)
T KOG1524|consen 93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSN--SIVFCQG--GH 167 (737)
T ss_pred cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCC--ceEEecC--Ce
Confidence 45667788899999999999999999999999999999984 44333333 3456677888877654 5565554 56
Q ss_pred EEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEE
Q 009597 352 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 431 (531)
Q Consensus 352 I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 431 (531)
+.|=.+.....+-..+.|.+-|.++.|++....+++|+.|-..+|||-..... ....+|..+|++++|+|+ +.++.+
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L--f~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL--FTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccc--ccCChhccceeeeeeccc-cceeee
Confidence 77767766677778899999999999999999999999999999999754432 233468999999999999 666665
Q ss_pred EcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 009597 432 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 486 (531)
Q Consensus 432 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~i 486 (531)
+. ++++ +. ....+.|..++||+||..+++|...|.+.+
T Consensus 245 S~-nt~R---------------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SY-NTAR---------------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-eeee---------------ec-CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 53 2333 11 112456888999999999999999998765
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.2e-12 Score=137.33 Aligned_cols=234 Identities=18% Similarity=0.195 Sum_probs=159.3
Q ss_pred eeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecC---CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCc
Q 009597 265 HVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 341 (531)
Q Consensus 265 ~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (531)
.+++++. .+...+.+..|...|.+.+|+|||+.|+.++.+ ..|.+||+.+++...............|+++ ...
T Consensus 185 ~l~i~D~-~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpD--G~~ 261 (433)
T PRK04922 185 ALQVADS-DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPD--GRR 261 (433)
T ss_pred EEEEECC-CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCC--CCE
Confidence 5777775 455666677788899999999999999987743 4699999988876443322222334455554 335
Q ss_pred EEEEeeCCC--eEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeC-CCC--EEEEEcCCCeEEEEeeCCCCCCc
Q 009597 342 ILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKS--LRVWEFGIPVVIKYISEPHMHSM 416 (531)
Q Consensus 342 ~l~sg~~dg--~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-Dg~--I~iwd~~~~~~~~~~~~~~~~~v 416 (531)
++++.+.+| .|++||+.+++.. .+..+.......+|+|+++.|+.++. ++. |.++|+.++....... .....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~~~ 338 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGNYN 338 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCCCc
Confidence 556666655 6999999888754 45555555678899999999887764 444 6666776665433222 23345
Q ss_pred cEEEEeCCCCEEEEEEcCC---eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECC
Q 009597 417 PSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWK 490 (531)
Q Consensus 417 ~~v~~sp~~~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~ 490 (531)
...+|+|+|++|+..+.++ .|.+||+.++... .+ ..+. ......|+|||++|+..+.+ +.|++++..
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L--t~~~----~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL--TPGS----LDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-EC--CCCC----CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 5789999999998876543 6999998776432 11 1111 12346899999998876653 468888874
Q ss_pred CCeEEEEeeccCCcEEEEEEec
Q 009597 491 SCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 491 ~~~~~~~~~~h~~~V~~v~~~p 512 (531)
+.....+..+.+.+...+|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 445666666667778888887
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=9e-13 Score=126.27 Aligned_cols=193 Identities=13% Similarity=0.229 Sum_probs=152.8
Q ss_pred ceEEEEEccCCCEEEEEecC--CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCcee
Q 009597 286 AVRDISFCNDGTKFLTASYD--KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 363 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~D--g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~ 363 (531)
.|.-+-|+. .++|..+.+ +.+++.++..+..+..+.-.+....+.++. +.|+++-.+. |+|||+++.+++
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr-----~RLvV~Lee~-IyIydI~~MklL 119 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR-----KRLVVCLEES-IYIYDIKDMKLL 119 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc-----ceEEEEEccc-EEEEecccceee
Confidence 455566654 455555544 459999999999999988888888888876 3466665544 999999999998
Q ss_pred EEEcc---cCCCeeEEEEecCCCEEEEE--eCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCe-E
Q 009597 364 QEYDQ---HLGAVNTITFVDSNRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-I 437 (531)
Q Consensus 364 ~~~~~---h~~~I~~l~~sp~~~~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~-I 437 (531)
.++.. +...+.++.+++.+.+++-- ...|.|.|||+.+.+.+..+. .|.+.+.+++|+++|.+||+++..|+ |
T Consensus 120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEE
Confidence 88754 44456666666677787753 346889999999999988887 59999999999999999999999996 7
Q ss_pred EEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009597 438 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 490 (531)
Q Consensus 438 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 490 (531)
+||.+.++..+.. |........|.+++|+|++++|++.+..++|+||.+.
T Consensus 199 RVf~v~~G~kl~e---FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 199 RVFSVPEGQKLYE---FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEEEcCCccEeee---eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 8999999866643 4434446678999999999999999999999999875
No 210
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.53 E-value=3.7e-12 Score=128.91 Aligned_cols=226 Identities=12% Similarity=0.243 Sum_probs=147.4
Q ss_pred EEEEecCCeEEEEeCCC-Cc--EEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECC-CCce--eEEEcccCCC
Q 009597 299 FLTASYDKNIKYWDTET-GQ--VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEI--TQEYDQHLGA 372 (531)
Q Consensus 299 l~s~s~Dg~I~vWd~~t-~~--~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~-t~~~--~~~~~~h~~~ 372 (531)
+++...++.|.+|++.+ ++ .+..+.....+..+.++++. ..+++++..++.|.+|++. ++.. +.... ..+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~--~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDK--RHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGS 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCC--CEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCC
Confidence 34457789999999964 33 55666555556666777643 2344555668999999997 3332 22222 2345
Q ss_pred eeEEEEecCCCEEEEEeC-CCCEEEEEcCCCe----EEEEeeCCCCCCccEEEEeCCCCEEEEEE-cCCeEEEEEcCCcc
Q 009597 373 VNTITFVDSNRRFVTSSD-DKSLRVWEFGIPV----VIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERF 446 (531)
Q Consensus 373 I~~l~~sp~~~~l~s~s~-Dg~I~iwd~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~s~s-~Dg~I~iwd~~~~~ 446 (531)
...++|+|++++|++++. ++.|.+|++.... .+..+ .+.....+++++|+++++++++ .++.|.+||+....
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 678999999998888764 7899999997421 22222 1234467788999999886655 55899999997633
Q ss_pred eecee--eeecCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCC--C--eEEEEeeccC------CcEEEEEEecC
Q 009597 447 QLNKK--KRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKS--C--KVFRTLKCHE------GVCIGCEWHPL 513 (531)
Q Consensus 447 ~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~iwd~~~--~--~~~~~~~~h~------~~V~~v~~~p~ 513 (531)
.+... ...... .......+.|+|+|++|++++. ++.|.+|++.. + +.+..+..+. .....+.++|
T Consensus 160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p- 237 (330)
T PRK11028 160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP- 237 (330)
T ss_pred cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-
Confidence 22110 001101 1223556899999999988876 89999999973 3 3344443221 1234688999
Q ss_pred CCCEEEEEe-CCCCEEeeC
Q 009597 514 EQSKVATCG-WDGLIKYWD 531 (531)
Q Consensus 514 ~~~~l~t~s-~Dg~I~iWD 531 (531)
++++|+++. .++.|.+||
T Consensus 238 dg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 238 DGRHLYACDRTASLISVFS 256 (330)
T ss_pred CCCEEEEecCCCCeEEEEE
Confidence 667777764 478899885
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=6.3e-14 Score=131.96 Aligned_cols=223 Identities=19% Similarity=0.209 Sum_probs=155.1
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcc
Q 009597 289 DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 368 (531)
Q Consensus 289 ~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~ 368 (531)
-++|||+|+++|+++.- .+.|-|.++.+..+.|..-....-+.+.. ++..++.+...++.|.+|++...+-...++.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeec--cceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 36799999999999965 88899999888776665433333344443 4446788888999999999999999999999
Q ss_pred cCCCeeEEEEecCCCEEE-EEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcce
Q 009597 369 HLGAVNTITFVDSNRRFV-TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 447 (531)
Q Consensus 369 h~~~I~~l~~sp~~~~l~-s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~ 447 (531)
....+..+.|+|+|+.++ +..-|-.|.+|.+.+......- . ....+..++|+|+|++.+..+.-...-.+.+.....
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~-pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-H-PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-c-cccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 999999999999997655 5566889999999887654332 2 345678999999999988877542221122211111
Q ss_pred eceeeeecCCccccceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCC
Q 009597 448 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 525 (531)
Q Consensus 448 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~--dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg 525 (531)
-..++.+.-.. ...+.+.|+|||..|++=.. +-.|+.|.. .-.+..++|+| .+++|+.|+.|+
T Consensus 168 W~ll~~f~~dT--~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~ 232 (447)
T KOG4497|consen 168 WILLKEFKLDT--IDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQ 232 (447)
T ss_pred HHHHHhcCCCc--ccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEEEecc-ccceEEeeccch
Confidence 11122232222 22455899999998875332 222222211 13578899999 888999999999
Q ss_pred CEEeeC
Q 009597 526 LIKYWD 531 (531)
Q Consensus 526 ~I~iWD 531 (531)
.+||-|
T Consensus 233 ~lrvln 238 (447)
T KOG4497|consen 233 MLRVLN 238 (447)
T ss_pred hhhhhc
Confidence 998743
No 212
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2e-12 Score=135.31 Aligned_cols=235 Identities=14% Similarity=0.177 Sum_probs=157.1
Q ss_pred ceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecC---CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCC
Q 009597 264 EHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 340 (531)
Q Consensus 264 ~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~ 340 (531)
..+++++. .+...+.+..|...|.+.+|+|||+.|+..+.+ ..|.+||+.+++...............|++++ .
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG--~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDG--R 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCC--C
Confidence 34666665 566666777888899999999999999877653 35999999988765433222333445566643 3
Q ss_pred cEEEEeeCCCeEEEE--ECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeC-CCCEEEEEc--CCCeEEEEeeCCCCCC
Q 009597 341 NILLAGMSDKKIVQW--DMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEF--GIPVVIKYISEPHMHS 415 (531)
Q Consensus 341 ~~l~sg~~dg~I~iw--d~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-Dg~I~iwd~--~~~~~~~~~~~~~~~~ 415 (531)
.++++.+.+|...|| |+.++. ...+..+...+....|+|+|+.|+.++. ++...||.+ ..+.... +.. ....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~-~g~~ 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTF-TGSY 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-Eec-CCCC
Confidence 455667778776665 455444 4455556566677899999998887664 466666655 4443322 221 2233
Q ss_pred ccEEEEeCCCCEEEEEEcCC---eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEEC
Q 009597 416 MPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWDW 489 (531)
Q Consensus 416 v~~v~~sp~~~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---~I~iwd~ 489 (531)
....+|+|+|++|+..+.++ .|.+||+.++... . +... .......|+|||++|+.++.++ .+++.++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~---lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-A---LTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-E---ccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 45678999999999877664 6999998876432 1 1111 1124478999999998877543 3666666
Q ss_pred CCCeEEEEeeccCCcEEEEEEec
Q 009597 490 KSCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 490 ~~~~~~~~~~~h~~~V~~v~~~p 512 (531)
+++....+..+.+.+...+|+|
T Consensus 403 -~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 403 -DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred -CCCceEEeecCCCCCCCCccCC
Confidence 5666666777777888889988
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=1.6e-14 Score=141.61 Aligned_cols=254 Identities=15% Similarity=0.188 Sum_probs=194.8
Q ss_pred hhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEE
Q 009597 253 EEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 332 (531)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 332 (531)
.+..+.-|+..|++-..+..++++...+. -...|.++.|-.+.++||++- ...+.||| ..|..++.+.....+..+.
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~~~v~rLe 216 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRHIRVARLE 216 (545)
T ss_pred CccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhcCchhhhc
Confidence 33444567788899999988898888876 355799999998888787776 56899999 4677777777777777777
Q ss_pred EccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCC
Q 009597 333 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 412 (531)
Q Consensus 333 ~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 412 (531)
|.|.. .+|++++..|.++--|+.+|+++..+....+.+..+.-+|-+..+-+|...|+|.+|.-....++..+.. |
T Consensus 217 FLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc-H 292 (545)
T KOG1272|consen 217 FLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC-H 292 (545)
T ss_pred ccchh---heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh-c
Confidence 77743 5788999999999999999999999999999999999999999999999999999999988887766654 9
Q ss_pred CCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE-CCC
Q 009597 413 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKS 491 (531)
Q Consensus 413 ~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd-~~~ 491 (531)
.++|.++++.++|.|+++.+.|..|+|||++....+..... .+ ....++||..| +||.+ ....|.||. .-.
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~----~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PH----PASNLSLSQKG-LLALS-YGDHVQIWKDALK 364 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CC----Ccccccccccc-ceeee-cCCeeeeehhhhc
Confidence 99999999999999999999999999999998765544333 11 24447888766 34333 444799994 222
Q ss_pred --CeEEEEeecc--CCcEEEEEEecCCCCEEEEEe
Q 009597 492 --CKVFRTLKCH--EGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 492 --~~~~~~~~~h--~~~V~~v~~~p~~~~~l~t~s 522 (531)
+..-..+..| .++|..+.|.| -...|-.|.
T Consensus 365 ~s~~~~~pYm~H~~~~~V~~l~FcP-~EDvLGIGH 398 (545)
T KOG1272|consen 365 GSGHGETPYMNHRCGGPVEDLRFCP-YEDVLGIGH 398 (545)
T ss_pred CCCCCCcchhhhccCcccccceecc-HHHeeeccc
Confidence 1221222223 34888999998 444444443
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.53 E-value=2.9e-13 Score=137.64 Aligned_cols=230 Identities=18% Similarity=0.255 Sum_probs=169.3
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCc-ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeE
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 364 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~ 364 (531)
.|..++|-|||..|+.+.. ..+.|||...|..+.++..++. ++++.++.+ +..+++|+.|..|.+|...- +-+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~d---GkrFASG~aDK~VI~W~~kl-EG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD---GKRFASGSADKSVIIWTSKL-EGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccC---CceeccCCCceeEEEecccc-ccee
Confidence 7999999999998887774 5899999999999999976543 566766664 36899999999999998642 2233
Q ss_pred EEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 009597 365 EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444 (531)
Q Consensus 365 ~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~ 444 (531)
.+ .|.+.|.|+.|+|-...|++++-.. .-+|........+.- ....+.+++|..+|.+|+.|-.+|+|.|-+...
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K~k---ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSKHK---SSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHHhhh---hheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 34 4999999999999999999988653 667877655443322 456788999999999999999999999986543
Q ss_pred cceeceeeeecCCccccceEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEE
Q 009597 445 RFQLNKKKRFAGHIVAGYACQVNFSPDG-----RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 519 (531)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~v~~l~~spdg-----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~ 519 (531)
. .-..+....|. ...|.+++|+|.. ..+++.+...++.++.+ +|+.+..-+.-.-...|+.+.+ ++.+++
T Consensus 164 E-ek~~I~Rpgg~--Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~-NGEy~L 238 (1081)
T KOG1538|consen 164 E-EKVKIERPGGS--NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFT-NGEYIL 238 (1081)
T ss_pred C-cceEEeCCCCC--CCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheecc-CCcEEE
Confidence 3 22233333344 4569999999963 34556666666666654 3444443332222346888899 888999
Q ss_pred EEeCCCCEEee
Q 009597 520 TCGWDGLIKYW 530 (531)
Q Consensus 520 t~s~Dg~I~iW 530 (531)
.||.|+.+++|
T Consensus 239 iGGsdk~L~~f 249 (1081)
T KOG1538|consen 239 LGGSDKQLSLF 249 (1081)
T ss_pred EccCCCceEEE
Confidence 99999998876
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.3e-12 Score=125.91 Aligned_cols=240 Identities=16% Similarity=0.244 Sum_probs=173.4
Q ss_pred ccCceEEEEEccCCC--EEEEEecCCeEEEEeCCCCcEEEEcc-----CCCcceEEEEccCCCCCcEEEEeeCCCeEEEE
Q 009597 283 HSKAVRDISFCNDGT--KFLTASYDKNIKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 355 (531)
Q Consensus 283 H~~~V~~l~fspdg~--~l~s~s~Dg~I~vWd~~t~~~i~~~~-----~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iw 355 (531)
-...|..++|..+++ .|+.++.|..+..+.++...+..... ......+...... ...|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEE
Confidence 345678888876543 46666577788888877766555431 1111122222221 2468899999999999
Q ss_pred ECCCCc----eeEEEcccCCCeeEEEEecCCCE-EEEEeCC--CCEEEEEcCCCeEEEEeeCCC--------CCCccEEE
Q 009597 356 DMNTKE----ITQEYDQHLGAVNTITFVDSNRR-FVTSSDD--KSLRVWEFGIPVVIKYISEPH--------MHSMPSIS 420 (531)
Q Consensus 356 d~~t~~----~~~~~~~h~~~I~~l~~sp~~~~-l~s~s~D--g~I~iwd~~~~~~~~~~~~~~--------~~~v~~v~ 420 (531)
....+. .+..+..+ ..+..+.-++.... +++|+.. ..+.|||+...+.+..-.... .-.++.+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 987543 23334433 45566666665554 5558888 789999999885554322211 12367888
Q ss_pred EeCC--CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-
Q 009597 421 LHPN--TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT- 497 (531)
Q Consensus 421 ~sp~--~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~- 497 (531)
|-+. ...|++++.-+++++||.+.+.+.. ..+.-. ...+.++...|+|++|++|..-|.+..||++.++.+..
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV--~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPV--AQFDFL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcce--eEeccc--cCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 9887 8899999999999999998765443 333322 34488899999999999999999999999999999887
Q ss_pred eeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 498 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 498 ~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+++-.+.|.++..|| ...+|++||-|..|||+|
T Consensus 286 ~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHP-THPVLASCGLDRYVRIHD 318 (412)
T ss_pred cCCccCCcceEEEcC-CCceEEeeccceeEEEee
Confidence 888999999999999 778999999999999997
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.4e-12 Score=125.81 Aligned_cols=225 Identities=16% Similarity=0.214 Sum_probs=165.7
Q ss_pred EecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc----EEEEccCCCcceEEEEccCCCCCcEEEEeeCC--CeE
Q 009597 279 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKI 352 (531)
Q Consensus 279 ~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~----~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~I 352 (531)
+..+.+++|..+... || .|++|-.+|.+.+|..+.+. .+..+..+.....+.-+ +....++++|+.. ..+
T Consensus 100 ~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~--~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQT--DTDPYIVATGGKENINEL 175 (412)
T ss_pred ccccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccC--CCCCceEecCchhcccce
Confidence 345567788888775 34 58888889999999988543 23334444443334333 3445788889999 899
Q ss_pred EEEECCCCceeEEEccc---------CCCeeEEEEecC--CCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEE
Q 009597 353 VQWDMNTKEITQEYDQH---------LGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 421 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~~h---------~~~I~~l~~sp~--~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~ 421 (531)
.+||+...+.+.+-+.- .-.++++.|.+. ...|++++.-+.|++||.+.++...........+|+++..
T Consensus 176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL 255 (412)
T ss_pred eeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence 99999887554433221 124678889987 8899999999999999998764433333346889999999
Q ss_pred eCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecc
Q 009597 422 HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH 501 (531)
Q Consensus 422 sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h 501 (531)
.|.++.+++|..-+.+..||++.+..+.. .+.+. .+.+.+|..+|.+.+|++++-|..|||+|+++.+++...-.
T Consensus 256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv- 330 (412)
T KOG3881|consen 256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGC--GLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV- 330 (412)
T ss_pred cCCCcEEEEecccchhheecccCceeecc--ccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-
Confidence 99999999999999999999999865543 23333 45688899999999999999999999999999777655432
Q ss_pred CCcEEEEEEec
Q 009597 502 EGVCIGCEWHP 512 (531)
Q Consensus 502 ~~~V~~v~~~p 512 (531)
...++++.+.+
T Consensus 331 Ks~lt~il~~~ 341 (412)
T KOG3881|consen 331 KSRLTFILLRD 341 (412)
T ss_pred hccccEEEecC
Confidence 22345666644
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.2e-11 Score=129.81 Aligned_cols=234 Identities=16% Similarity=0.155 Sum_probs=157.6
Q ss_pred ceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEec---CCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCC
Q 009597 264 EHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 340 (531)
Q Consensus 264 ~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~---Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~ 340 (531)
..+++++. .+...+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.+++...............|+++ ..
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPD--G~ 258 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPD--GR 258 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCC--CC
Confidence 35666665 45666777789999999999999999887764 46899999998876443222333334455554 33
Q ss_pred cEEEEeeCCCe--EEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeC-CC--CEEEEEcCCCeEEEEeeCCCCCC
Q 009597 341 NILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHS 415 (531)
Q Consensus 341 ~~l~sg~~dg~--I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~~ 415 (531)
.++++.+.++. |++||+.++... .+..+........|+|+|+.|+.++. +| .|.+||+..+.... +.. ....
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~-~~~~ 335 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF-GGGR 335 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec-CCCc
Confidence 55666666654 778899877654 45556666778999999999887774 33 58888887664433 322 3445
Q ss_pred ccEEEEeCCCCEEEEEEcC---CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC------CcEEE
Q 009597 416 MPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE------GKCWF 486 (531)
Q Consensus 416 v~~v~~sp~~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d------g~I~i 486 (531)
+....|+|+|++|+..+.+ ..|.+||+..+.. . .+... ..+..+.|+|||++|+..+.+ ..|++
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~---~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-R---ILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-E---eccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 6678999999999887654 3688888755422 1 11111 124458899999998765532 35888
Q ss_pred EECCCCeEEEEeeccCCcEEEEEEec
Q 009597 487 WDWKSCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 487 wd~~~~~~~~~~~~h~~~V~~v~~~p 512 (531)
+|+..+.. ..+. ..+.+...+|+|
T Consensus 409 ~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 409 VDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EECCCCce-EEcc-CCCCccCcccCC
Confidence 88876554 3444 344567778887
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=1.5e-11 Score=115.94 Aligned_cols=234 Identities=15% Similarity=0.186 Sum_probs=158.9
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCc-ceEEEEccCCCCCcEEEEeeCC------CeEEEEECC
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSD------KKIVQWDMN 358 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~d------g~I~iwd~~ 358 (531)
...+++|+.|...++.|..+| .+||+++--+.......... ...+.+.+-. .-+.++|+.+ .+|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEecc
Confidence 345599999998888887665 89999875332211111111 1122222211 1344455443 489999976
Q ss_pred CCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcC-CCeEEEEeeCCC-CCCccEEEEeCCCCEEEE-EEcCC
Q 009597 359 TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG-IPVVIKYISEPH-MHSMPSISLHPNTNWLAA-QSLDN 435 (531)
Q Consensus 359 t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~-~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~s-~s~Dg 435 (531)
...++.++. ...+|.+|.+.++ ++++.- .+.|.||.+. .++.+..+.... ...+.+++-+.+..+|+. |-.-|
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 677777776 5588999999754 455554 5679999987 455555554311 233333333334445554 33458
Q ss_pred eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEeec--cCCcEEEEEEec
Q 009597 436 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-CWFWDWKSCKVFRTLKC--HEGVCIGCEWHP 512 (531)
Q Consensus 436 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~-I~iwd~~~~~~~~~~~~--h~~~V~~v~~~p 512 (531)
+|+|-|+.....- .......|. ..|.|++++.+|..||++|..|+ |||||..+|..+..++- ....|.+++|+|
T Consensus 160 qvQi~dL~~~~~~-~p~~I~AH~--s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPN-APSIINAHD--SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcC-CceEEEccc--CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence 9999998764331 224456674 55999999999999999999997 79999999999999872 334799999999
Q ss_pred CCCCEEEEEeCCCCEEee
Q 009597 513 LEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 513 ~~~~~l~t~s~Dg~I~iW 530 (531)
+..+|+.+|.-|+|.||
T Consensus 237 -~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 237 -NSSWLAVSSDKGTLHIF 253 (346)
T ss_pred -CccEEEEEcCCCeEEEE
Confidence 88999999999999987
No 219
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.1e-11 Score=130.51 Aligned_cols=245 Identities=15% Similarity=0.198 Sum_probs=177.3
Q ss_pred CccCceEEEEEccCCCEEEEEecCCeEEEEeCCC--C--cEEEEcc-CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEE
Q 009597 282 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET--G--QVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 356 (531)
Q Consensus 282 gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t--~--~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd 356 (531)
.|...++|.++||+++++++|..||+|.+|.--. + .....+. ++..+.++.|+.++ .+|++|+..|.+.+|.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G---~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG---AYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC---ceEeecccceEEEEEe
Confidence 4777899999999999999999999999995322 1 1122232 23445666666644 5799999999999999
Q ss_pred CCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEee---CC-------CCCCccEEEEeCCCC
Q 009597 357 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS---EP-------HMHSMPSISLHPNTN 426 (531)
Q Consensus 357 ~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~-------~~~~v~~v~~sp~~~ 426 (531)
+.+++ .+-+..-.++|..+.++|++.+.+....|..|.+....+......+. .+ ...-.+.++++|..+
T Consensus 280 ~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 280 LETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred ecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 99988 55566677899999999999999999999999998764433222222 11 233467789999888
Q ss_pred EEEEEEcCCeEEEEEcCCcceeceeeeecCCc------cccceEEEEEcCCCCEEEEEe--------CC--CcEEEEECC
Q 009597 427 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHI------VAGYACQVNFSPDGRFVMSGD--------GE--GKCWFWDWK 490 (531)
Q Consensus 427 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~------~~~~v~~l~~spdg~~l~sgs--------~d--g~I~iwd~~ 490 (531)
.++..+..|.|.+||+-+...+..+.....+. ....++.++.+..|.+++++- .| -.+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 88999999999999998877665544433222 223466778888899999874 23 357889654
Q ss_pred C----CeEEEEe-eccCCcEEEEEEecCCCC-EEEEEeCCCCEEee
Q 009597 491 S----CKVFRTL-KCHEGVCIGCEWHPLEQS-KVATCGWDGLIKYW 530 (531)
Q Consensus 491 ~----~~~~~~~-~~h~~~V~~v~~~p~~~~-~l~t~s~Dg~I~iW 530 (531)
. ..+...+ ..|...+...++.+.... .++|+|.||.++||
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence 3 3333333 367776665555553444 89999999999999
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.46 E-value=7.9e-13 Score=131.90 Aligned_cols=162 Identities=18% Similarity=0.289 Sum_probs=114.5
Q ss_pred CceEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEE-CCCCce
Q 009597 285 KAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD-MNTKEI 362 (531)
Q Consensus 285 ~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd-~~t~~~ 362 (531)
..|+||.|-| +...|+.+-.+|.+.++|.+ +..+...........++ .+... .|- ..+..+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~~k~~~---~f~i~-------t~ksk~~rNP 282 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQALKDGD---QFAIL-------TSKSKKTRNP 282 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeecc-------ccccCCCCcccccCCCC---eeEEe-------eeeccccCCc
Confidence 7899999999 44567778889999999872 11111111122222221 12211 111 122345
Q ss_pred eEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEc
Q 009597 363 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 442 (531)
Q Consensus 363 ~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~ 442 (531)
+..+....+.|+..+|+|||++|++.|.||.+||||+.+...+-... ..-+...|++|+|||++|++|+.|.-|.||.+
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 55555566799999999999999999999999999998876544333 25567899999999999999999999999999
Q ss_pred CCcceeceeeeecCCccccceEEEEEc
Q 009597 443 RERFQLNKKKRFAGHIVAGYACQVNFS 469 (531)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~v~~l~~s 469 (531)
..++.+ -.+|.+..+|..++|.
T Consensus 362 ~erRVV-----ARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 362 EERRVV-----ARGQGHKSWVSVVAFD 383 (636)
T ss_pred ccceEE-----EeccccccceeeEeec
Confidence 887544 2344446889989888
No 221
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.45 E-value=9.4e-14 Score=144.49 Aligned_cols=260 Identities=18% Similarity=0.242 Sum_probs=189.7
Q ss_pred HHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-
Q 009597 248 YAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK- 326 (531)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~- 326 (531)
....+.+....+|..+..+++|+..++.|+....||.+.|++++.+.+..+++++|.|..|++|.+.++..+..+..+.
T Consensus 196 a~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg 275 (1113)
T KOG0644|consen 196 AIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG 275 (1113)
T ss_pred eeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcccc
Confidence 3456677788899999999999999999999999999999999999998899999999999999999999998885443
Q ss_pred cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEE----c-ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC
Q 009597 327 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY----D-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 401 (531)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~----~-~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~ 401 (531)
.+..+.|.| ..+.+.||++++||.+ ..++... . ....-+.++.|...+..++|++.|+.-..|.+..
T Consensus 276 avtaiafsP-------~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~ 347 (1113)
T KOG0644|consen 276 AVTAIAFSP-------RASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ 347 (1113)
T ss_pred ceeeeccCc-------cccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhH
Confidence 345555655 3377889999999987 2211111 0 1224567788888889999999999999987653
Q ss_pred CeE--EEEeeCCCCCCccEEEEe-CCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEE
Q 009597 402 PVV--IKYISEPHMHSMPSISLH-PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMS 477 (531)
Q Consensus 402 ~~~--~~~~~~~~~~~v~~v~~s-p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~s 477 (531)
... ...+. +..+ -...+.++.-.+..+.+|++.+++.+ ....+|... +..+.++|- .+...+
T Consensus 348 l~~~~~~lif---------~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~---H~l~ghsd~--~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 348 LAWRSNLLIF---------VTRSSDLSSIVVTARNDHRLCVWNLYTGQLL---HNLMGHSDE--VYVLDVHPFNPRIAMS 413 (1113)
T ss_pred hhhhccceEE---------EeccccccccceeeeeeeEeeeeecccchhh---hhhcccccc--eeeeeecCCCcHhhhh
Confidence 211 11111 1111 11245666677788999999887554 344556444 445889994 455568
Q ss_pred EeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 478 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 478 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
++.||.+.|||+-.|.+++.+....+.+....|++ ++..++....-|.+.|.
T Consensus 414 ag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSq-dgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQ-DGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ccCCCceEeeecccCCcceeeecccceeeccccCC-CCceEecCCCCCceEEe
Confidence 89999999999998888776653355677889998 55556555556666653
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.44 E-value=3.2e-12 Score=120.35 Aligned_cols=199 Identities=15% Similarity=0.218 Sum_probs=152.4
Q ss_pred CcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc---eeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC-
Q 009597 326 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI- 401 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~---~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~- 401 (531)
...++.++..+ ...++++.....|.||.....+ ...++..|...|++|+|.|..++|++|+.|..-++|....
T Consensus 11 ~pitchAwn~d---rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 11 EPITCHAWNSD---RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred CceeeeeecCC---CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 34455555553 3578899999999999886654 6788899999999999999999999999999999999843
Q ss_pred Ce--EEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe
Q 009597 402 PV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 479 (531)
Q Consensus 402 ~~--~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 479 (531)
++ +...+. .+....+++.|+|.++.|++|+.-..|.||-+.....--..+. ........|.+++|+|++-+|++|+
T Consensus 88 ~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh-ikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH-IKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh-hCCccccceeeeeccCCcceecccc
Confidence 32 222222 2678899999999999999999999999998765432211111 1222346689999999999999999
Q ss_pred CCCcEEEEECC------------------CCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 480 GEGKCWFWDWK------------------SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 480 ~dg~I~iwd~~------------------~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.|+..||+..- -|.++..+....+.|..+.|+| .+..|+-.+.|+++.+=
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFV 233 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEe
Confidence 99999998531 1334445544567899999999 77889988999988763
No 223
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=9.6e-12 Score=130.29 Aligned_cols=209 Identities=13% Similarity=0.063 Sum_probs=135.0
Q ss_pred CCeEEEEeCCCCcEEEEccC-CCcceEEEEccCCCCCcEEEEeeC---CCeEEEEECCCCceeEEEcccCCCeeEEEEec
Q 009597 305 DKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMS---DKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 380 (531)
Q Consensus 305 Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~---dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp 380 (531)
+..|.+||..... ...+.. ........|++++ ..|+.++. +..|++||+.+++.... ....+....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG---~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDG---SKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCC---CEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC
Confidence 4689999986555 334433 3334556666643 34555443 24799999988764322 11223345789999
Q ss_pred CCCEEEEEe-CCCCEEEE--EcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEE-cCCeEEEEEcCCcceeceeeeecC
Q 009597 381 SNRRFVTSS-DDKSLRVW--EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAG 456 (531)
Q Consensus 381 ~~~~l~s~s-~Dg~I~iw--d~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~ 456 (531)
+|+.|+.++ .+|.+.|| |+.++.. ..+.. +...+....|+|+|+.|+..+ .++...||++....... ..+ +
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~--~~l-~ 332 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA--SLV-G 332 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEe-c
Confidence 999888765 67876665 5555543 33332 555688999999999877655 56888888765322111 111 2
Q ss_pred CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 457 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 457 ~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+. + ....|+|+|++|+.++.++ +.+||+.+++.......+ ....+.|+| ++.+|+.++.+|.+.+|+
T Consensus 333 ~~--~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 333 GR--G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CC--C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEE
Confidence 21 1 2367999999998887764 667999988754332222 235678999 788899988899888763
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=9.2e-12 Score=118.98 Aligned_cols=227 Identities=15% Similarity=0.254 Sum_probs=153.0
Q ss_pred CceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccC--CCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCC--
Q 009597 285 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-- 360 (531)
Q Consensus 285 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~-- 360 (531)
..++.++|++.-..|+++..|-.|++|+-.. ++...++. ...+.++.|.|... ..|++|+.. -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsa--selavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSA--SELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCc--ceeeeeecc-eeEEEEcCcccc
Confidence 4577889998666788999999999999765 55444544 34556677777654 467777754 5889976321
Q ss_pred --ce----------eEEEcccCCCeeEEEEecCCCEEEEEeC-CCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCE
Q 009597 361 --EI----------TQEYDQHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 427 (531)
Q Consensus 361 --~~----------~~~~~~h~~~I~~l~~sp~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 427 (531)
.. +....+| .+|+++.|.++|..+++++. |..|.|||..++..+..... ..+.++-+.|+|++.+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcCCCCE
Confidence 11 2233445 78999999999999999886 56899999999877665532 5677889999999999
Q ss_pred EEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECC--CC-----------e
Q 009597 428 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWK--SC-----------K 493 (531)
Q Consensus 428 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~--~~-----------~ 493 (531)
|++++-|+..++|.........+.. .+ .+.|...+|+|+|++|+... ..-.|+-.... .. .
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~--lg---sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWI--LG---SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVL 327 (445)
T ss_pred EEEecccceeeeehhcccceeccee--cc---CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeee
Confidence 9999999999999654322211111 11 34688899999999876544 33333222111 10 0
Q ss_pred EEEEe-----ec----cCCcEEEEEEecCCCCEEEEEeC
Q 009597 494 VFRTL-----KC----HEGVCIGCEWHPLEQSKVATCGW 523 (531)
Q Consensus 494 ~~~~~-----~~----h~~~V~~v~~~p~~~~~l~t~s~ 523 (531)
++..+ .+ -.+.+.+++|.| .+.+|++.-.
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fK 365 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFK 365 (445)
T ss_pred eeccchhhhhhcCcccccCccceeeECC-CCCEEEEEEc
Confidence 11111 11 135678999999 6677776544
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=3.9e-12 Score=120.06 Aligned_cols=257 Identities=14% Similarity=0.217 Sum_probs=172.2
Q ss_pred CCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCE-EEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccC
Q 009597 258 AGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTK-FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPD 336 (531)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~-l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~ 336 (531)
-...+++.|.+|+....+-...+.....++.+++|||||+. |.+...|-.|.||.+.+.++...-...+....+.|+++
T Consensus 65 C~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 65 CVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPD 144 (447)
T ss_pred eeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCC
Confidence 34567788999999888888889888999999999999965 55777899999999999887766655666677778775
Q ss_pred CCCCcEEEEeeCCC---eEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC
Q 009597 337 DDKQNILLAGMSDK---KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 413 (531)
Q Consensus 337 ~~~~~~l~sg~~dg---~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 413 (531)
+. +.+..+.-. .+.|........+..+....-..+.|.|+|+|..|++ ||.--.-.+. .-...
T Consensus 145 g~---f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~--aYe~~ 210 (447)
T KOG4497|consen 145 GQ---FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVY--AYERG 210 (447)
T ss_pred Cc---eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheee--eeeec
Confidence 43 344333221 1222222334556667667777889999999887664 4422111111 11123
Q ss_pred CCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceecee------------------------------------------
Q 009597 414 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK------------------------------------------ 451 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~------------------------------------------ 451 (531)
-.+..++|+|.+++|++|+.|+.++|.+--+-+.....
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~ 290 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE 290 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc
Confidence 46778899999999999999998887653221100000
Q ss_pred ---------------eeec----CCccccceEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeEEEEeeccCCcEEEEEE
Q 009597 452 ---------------KRFA----GHIVAGYACQVNFSPDGRFVMSGDGE--GKCWFWDWKSCKVFRTLKCHEGVCIGCEW 510 (531)
Q Consensus 452 ---------------~~~~----~~~~~~~v~~l~~spdg~~l~sgs~d--g~I~iwd~~~~~~~~~~~~h~~~V~~v~~ 510 (531)
..++ .......+..++|++|..|+++-.+. ..+.+||++..++...+. ...+|....|
T Consensus 291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~W 369 (447)
T KOG4497|consen 291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEW 369 (447)
T ss_pred cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEe
Confidence 0000 00011234558999999999987643 579999999877655554 3457999999
Q ss_pred ecCCCCEEEEEeCCCCEEee
Q 009597 511 HPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 511 ~p~~~~~l~t~s~Dg~I~iW 530 (531)
+| +...|+.|.....+++|
T Consensus 370 dP-~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 370 DP-GRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CC-CCceEEEEcCCceEEEE
Confidence 99 55556666656668877
No 226
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=2.7e-11 Score=112.41 Aligned_cols=136 Identities=15% Similarity=0.346 Sum_probs=97.2
Q ss_pred eEEEEECCC-CceeEEEcc-cCCCeeEEEEecCCCEEEEE--eCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCC
Q 009597 351 KIVQWDMNT-KEITQEYDQ-HLGAVNTITFVDSNRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN 426 (531)
Q Consensus 351 ~I~iwd~~t-~~~~~~~~~-h~~~I~~l~~sp~~~~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 426 (531)
...+|.++. ...+..+.. ..++|.+++|+|+++.|++. ..++.|.+||++ ...+..+ ....+..+.|+|+|+
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGR 113 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCCCC
Confidence 344555422 233444433 34579999999999987655 356799999997 4444444 356778999999999
Q ss_pred EEEEEEcC---CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeEEEE
Q 009597 427 WLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRT 497 (531)
Q Consensus 427 ~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~------dg~I~iwd~~~~~~~~~ 497 (531)
+|++++.+ |.|.+||+++...+.. +. | ..+..++|+|+|++|+++.. |..++||++. |+++..
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~---~~-~---~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKIST---FE-H---SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeec---cc-c---CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 99998754 6799999997655432 22 2 23677999999999999874 6789999974 666654
Q ss_pred e
Q 009597 498 L 498 (531)
Q Consensus 498 ~ 498 (531)
.
T Consensus 186 ~ 186 (194)
T PF08662_consen 186 K 186 (194)
T ss_pred c
Confidence 4
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=2e-11 Score=113.29 Aligned_cols=147 Identities=21% Similarity=0.374 Sum_probs=104.7
Q ss_pred eEEEEecCCCEEEEEeC----------CCCEEEEEcCCC-eEEEEeeCCCCCCccEEEEeCCCCEEEEE--EcCCeEEEE
Q 009597 374 NTITFVDSNRRFVTSSD----------DKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQ--SLDNQILIY 440 (531)
Q Consensus 374 ~~l~~sp~~~~l~s~s~----------Dg~I~iwd~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~l~s~--s~Dg~I~iw 440 (531)
..+.|+++|.+|+.-.. -+...||.++.. ..+..+......+|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35788898887665433 123555555332 23334433345679999999999987665 367799999
Q ss_pred EcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCE
Q 009597 441 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 517 (531)
Q Consensus 441 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 517 (531)
|++. . .+..+. ...++.+.|+|+|++|++++. .|.|.+||.++.+.+.+.. |. .+..++|+| ++++
T Consensus 89 d~~~-~---~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsP-dGr~ 157 (194)
T PF08662_consen 89 DVKG-K---KIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSP-DGRY 157 (194)
T ss_pred cCcc-c---EeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcC-CCCE
Confidence 9962 2 223332 234667999999999999874 4679999999999888775 33 478999999 7888
Q ss_pred EEEEeC------CCCEEeeC
Q 009597 518 VATCGW------DGLIKYWD 531 (531)
Q Consensus 518 l~t~s~------Dg~I~iWD 531 (531)
|+++.. |+.++||+
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEEEeccceeccccEEEEE
Confidence 888764 78889985
No 228
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=2e-11 Score=115.97 Aligned_cols=245 Identities=20% Similarity=0.347 Sum_probs=167.4
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc-----EEEEccCCC-------------cceEEEEccCCCCCcEEE
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----VIRTFSTGK-------------IPYVVKLNPDDDKQNILL 344 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-----~i~~~~~~~-------------~~~~~~~~~~~~~~~~l~ 344 (531)
...-|.+|.|...|.+|++|..+|.|.++.-+... ....+..+. ....+.+.... +...++
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~-n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG-NLAEFL 102 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC-CccEEE
Confidence 34568999999999999999999999999654322 222222221 12233444433 345678
Q ss_pred EeeCCCeEEEEECCCCce-----------------------------------eEEE-cccCCCeeEEEEecCCCEEEEE
Q 009597 345 AGMSDKKIVQWDMNTKEI-----------------------------------TQEY-DQHLGAVNTITFVDSNRRFVTS 388 (531)
Q Consensus 345 sg~~dg~I~iwd~~t~~~-----------------------------------~~~~-~~h~~~I~~l~~sp~~~~l~s~ 388 (531)
..+.|.+|++|.+..... .+.+ ..|.-.|++|.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 888899999998753211 1111 3578889999999999988887
Q ss_pred eCCCCEEEEEcCCCeEEEEeeC--CC-----CCCccEEEEeC-CCCEEEEEEcCCeEEEEEcCCccee-ceeeeecCCc-
Q 009597 389 SDDKSLRVWEFGIPVVIKYISE--PH-----MHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQL-NKKKRFAGHI- 458 (531)
Q Consensus 389 s~Dg~I~iwd~~~~~~~~~~~~--~~-----~~~v~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~- 458 (531)
. |=.|.+|.+........+.. |+ +.-|++..||| ..+.|+-.+..|+|++.|++..... ...+.+....
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 5 66799999876432222221 12 23488999999 4677888899999999999853211 1111111110
Q ss_pred ---------cccceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEeeccCC------------c---EEEEEEecC
Q 009597 459 ---------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDW-KSCKVFRTLKCHEG------------V---CIGCEWHPL 513 (531)
Q Consensus 459 ---------~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~-~~~~~~~~~~~h~~------------~---V~~v~~~p~ 513 (531)
.-..|..+.|+++|+||++-+.- +|.+||+ ...+++.+++.|.. . -..|+|+-
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg- 339 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG- 339 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-
Confidence 01347789999999999988654 8999999 56778888877742 1 24678887
Q ss_pred CCCEEEEEeCCCCEEeeC
Q 009597 514 EQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 514 ~~~~l~t~s~Dg~I~iWD 531 (531)
+...++|||....+++++
T Consensus 340 ~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred CcceEecccccceEEEec
Confidence 677999999999999875
No 229
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=1.6e-10 Score=120.75 Aligned_cols=232 Identities=16% Similarity=0.167 Sum_probs=151.6
Q ss_pred eeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecC---CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCc
Q 009597 265 HVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 341 (531)
Q Consensus 265 ~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (531)
.+++++. .+...+.+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++...............|+++ ...
T Consensus 171 ~l~~~d~-~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spD--g~~ 247 (417)
T TIGR02800 171 ELQVADY-DGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPD--GSK 247 (417)
T ss_pred eEEEEcC-CCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCC--CCE
Confidence 4555554 344456666777889999999999999877654 4799999998866544333333344556554 334
Q ss_pred EEEEeeCCC--eEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCC-C--CEEEEEcCCCeEEEEeeCCCCCCc
Q 009597 342 ILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMHSM 416 (531)
Q Consensus 342 ~l~sg~~dg--~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~v 416 (531)
++++.+.++ .|++||+.++... .+..+........|+|++++|+.++.. + .|.++|+.++.... +.. +...+
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~-~~~~~ 324 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF-RGGYN 324 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec-CCCCc
Confidence 555655554 5889999877643 344455555678999999988876653 3 57778887765433 322 34567
Q ss_pred cEEEEeCCCCEEEEEEcCC---eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECC
Q 009597 417 PSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWDWK 490 (531)
Q Consensus 417 ~~v~~sp~~~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---~I~iwd~~ 490 (531)
..+.|+|++++|+.++.++ .|.+||+.++... .+.... ......|+|+|++|+..+.++ .+++.+.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~- 396 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER----VLTDTG---LDESPSFAPNGRMILYATTRGGRGVLGLVST- 396 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE----EccCCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-
Confidence 7889999999999988876 7889998774321 111111 122368999999988877554 3555553
Q ss_pred CCeEEEEeeccCCcEEEEEE
Q 009597 491 SCKVFRTLKCHEGVCIGCEW 510 (531)
Q Consensus 491 ~~~~~~~~~~h~~~V~~v~~ 510 (531)
.++....+..+.+.+..++|
T Consensus 397 ~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CCceeeECCCCCCCcCCCCC
Confidence 44555555544455555554
No 230
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=6.1e-12 Score=120.98 Aligned_cols=165 Identities=15% Similarity=0.218 Sum_probs=137.2
Q ss_pred EEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcC------CCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeE
Q 009597 364 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG------IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 437 (531)
Q Consensus 364 ~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~------~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I 437 (531)
+.+.+|.+.|++|.|+.++++|++|++|..+++|.+. +++++.....+|...|.|++|......+.+|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3456799999999999999999999999999999974 5677777777888999999999999999999999999
Q ss_pred EEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEE--EeeccCCcEEEEEEecCC
Q 009597 438 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VFR--TLKCHEGVCIGCEWHPLE 514 (531)
Q Consensus 438 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~-~~~--~~~~h~~~V~~v~~~p~~ 514 (531)
.+.|+.+...+ ..+......+.|..+..+|..+.|++.+.++.|.|||.+... .+. .+........++.|+|..
T Consensus 130 I~HDiEt~qsi---~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 130 IKHDIETKQSI---YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred Eeeecccceee---eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999987555 334444445678889999999999999999999999998654 221 122234467889999988
Q ss_pred CCEEEEEeCCCCEEeeC
Q 009597 515 QSKVATCGWDGLIKYWD 531 (531)
Q Consensus 515 ~~~l~t~s~Dg~I~iWD 531 (531)
..+|++.+.-+-+.+||
T Consensus 207 P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFD 223 (609)
T ss_pred ceeEEeccccCCCCcee
Confidence 88999999999899997
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=3.4e-10 Score=108.46 Aligned_cols=275 Identities=13% Similarity=0.135 Sum_probs=169.8
Q ss_pred HHhhhhccCCCCCCCceeeeeecccCeeeEEecC-ccCceEEEEEccC-CCEEEEEecCCeEEEEeCCCC----c-----
Q 009597 249 AKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMG-HSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG----Q----- 317 (531)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~g-H~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~----~----- 317 (531)
++.+.-...+.+..+.+|++++... ++...++. ....|+|++|-|. ++-|+.|+. +-|.||..... .
T Consensus 105 aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~ 182 (445)
T KOG2139|consen 105 AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMM 182 (445)
T ss_pred eechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccc
Confidence 3444444456677888888887765 55555543 3458999999995 556777776 46999976421 1
Q ss_pred ---EEEEccCCCcceEEEEccCCCCCcEEEEe-eCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCC
Q 009597 318 ---VIRTFSTGKIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393 (531)
Q Consensus 318 ---~i~~~~~~~~~~~~~~~~~~~~~~~l~sg-~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~ 393 (531)
+...+.......+..+.+..+. ..++++ -.+..|.|||..++..+.......+.++-+.|+|++.+|.+++-|+.
T Consensus 183 s~~~~qvl~~pgh~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav 261 (445)
T KOG2139|consen 183 STHHLQVLQDPGHNPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV 261 (445)
T ss_pred cccchhheeCCCCceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce
Confidence 1122222333445555555444 445554 45789999999999877766566788999999999999999999999
Q ss_pred EEEEEcC-CCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCccee------------cee------eee
Q 009597 394 LRVWEFG-IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL------------NKK------KRF 454 (531)
Q Consensus 394 I~iwd~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~------------~~~------~~~ 454 (531)
.++|... +....+.+. ..+.|...+|+|.|..|+.... |.-++|.+.....- ..+ ...
T Consensus 262 frlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ 338 (445)
T KOG2139|consen 262 FRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTIC 338 (445)
T ss_pred eeeehhcccceecceec--cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhh
Confidence 9999544 344444443 3459999999999988776553 33344543221100 000 000
Q ss_pred cC-CccccceEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCeEEEEee----ccCCcEEEEEEec--CCCCEEE
Q 009597 455 AG-HIVAGYACQVNFSPDGRFVMSGDGEG--------KCWFWDWKSCKVFRTLK----CHEGVCIGCEWHP--LEQSKVA 519 (531)
Q Consensus 455 ~~-~~~~~~v~~l~~spdg~~l~sgs~dg--------~I~iwd~~~~~~~~~~~----~h~~~V~~v~~~p--~~~~~l~ 519 (531)
.+ ....+.+.+++|.|.|.+|++.-..+ .|.+||.+..-.+.-.. +... ..-+.|+| .++.+|.
T Consensus 339 ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~-P~~IsF~pl~n~g~lLs 417 (445)
T KOG2139|consen 339 AGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY-PAYISFGPLKNEGRLLS 417 (445)
T ss_pred cCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC-CceEEeeecccCCcEEE
Confidence 11 11245677899999999999876543 36778877544433221 1111 23344444 2344555
Q ss_pred EEeCCCCEEee
Q 009597 520 TCGWDGLIKYW 530 (531)
Q Consensus 520 t~s~Dg~I~iW 530 (531)
.|=..|.|.-|
T Consensus 418 iaWsTGriq~y 428 (445)
T KOG2139|consen 418 IAWSTGRIQRY 428 (445)
T ss_pred EEeccCceEee
Confidence 55445665543
No 232
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=5.7e-12 Score=140.52 Aligned_cols=229 Identities=17% Similarity=0.320 Sum_probs=175.5
Q ss_pred EecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECC
Q 009597 279 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 358 (531)
Q Consensus 279 ~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~ 358 (531)
.++.|-..|.++.=+|...+.+||+.||.|++|....++.+..+.......+....+.. .++.+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC
Confidence 34556778999999998889999999999999999999988888766664444443333 44678889999999999987
Q ss_pred CCceeEEEcccCCCeeEEEEecCCCEEEEEe---CCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCC
Q 009597 359 TKEITQEYDQHLGAVNTITFVDSNRRFVTSS---DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 435 (531)
Q Consensus 359 t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg 435 (531)
.++....+.|....+.+.|.. ..+++++ +++.+.+||.-.+.....+...|.+.++++++.|...+|++|+.+|
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred -CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 677788899999999999975 5566654 5788999998776555555577999999999999999999999999
Q ss_pred eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec---cCCc--EEEEEE
Q 009597 436 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGV--CIGCEW 510 (531)
Q Consensus 436 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~--V~~v~~ 510 (531)
.|++||++..+.....+. +. ...++++|+..|.|+||++.....++++.. |.+. .+....
T Consensus 2359 ~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~ 2423 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQI 2423 (2439)
T ss_pred cEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCcee
Confidence 999999998654432221 33 466899999999999999998877777752 2221 111222
Q ss_pred ecCCCCEEEEEeCCCC
Q 009597 511 HPLEQSKVATCGWDGL 526 (531)
Q Consensus 511 ~p~~~~~l~t~s~Dg~ 526 (531)
.-.-...|++|+.||+
T Consensus 2424 ~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2424 NVGQCNRIFSCGADGT 2439 (2439)
T ss_pred eeccCceEEEecCCCC
Confidence 2223457889999884
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=4.2e-10 Score=118.16 Aligned_cols=233 Identities=12% Similarity=0.115 Sum_probs=151.5
Q ss_pred eeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecC---CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcE
Q 009597 266 VEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 342 (531)
Q Consensus 266 i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (531)
+++.+.. +...+.+..|...+....|+|||+.|+..+.+ ..|.+|++.+++...............|++++ ..+
T Consensus 181 l~~~d~~-g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG--~~l 257 (430)
T PRK00178 181 LQRSDYD-GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDG--SKL 257 (430)
T ss_pred EEEECCC-CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCC--CEE
Confidence 5555543 44455666678889999999999998876644 36999999988765433222223345555543 345
Q ss_pred EEEeeCCC--eEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeC-CC--CEEEEEcCCCeEEEEeeCCCCCCcc
Q 009597 343 LLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHSMP 417 (531)
Q Consensus 343 l~sg~~dg--~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~~v~ 417 (531)
+++...+| .|++||+.+++.. .+..+........|+|+++.|+..+. ++ .|.++|+.++........ .....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~~~ 334 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--GNYNA 334 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCCcc
Confidence 55655555 6888899887654 34445566677899999998877664 33 577778877654333221 23344
Q ss_pred EEEEeCCCCEEEEEEcCC---eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 009597 418 SISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKS 491 (531)
Q Consensus 418 ~v~~sp~~~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~~ 491 (531)
...|+|+|++|+..+.++ .|.++|+.++... .+. ... ......|+|+|++|+..+.+ ..|+++++.
T Consensus 335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt--~~~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~- 406 (430)
T PRK00178 335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT--DTS----LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN- 406 (430)
T ss_pred ceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc--CCC----CCCCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 678999999998877543 5888898775422 111 111 11136899999999876643 357777874
Q ss_pred CeEEEEeeccCCcEEEEEEec
Q 009597 492 CKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 492 ~~~~~~~~~h~~~V~~v~~~p 512 (531)
+.....+..+.+.+...+|+|
T Consensus 407 g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 407 GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 444445555666777888887
No 234
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.6e-10 Score=118.00 Aligned_cols=233 Identities=14% Similarity=0.126 Sum_probs=148.5
Q ss_pred eeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecC---CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcE
Q 009597 266 VEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 342 (531)
Q Consensus 266 i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (531)
+++.+. .+...+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++...............|+++ ...+
T Consensus 200 l~i~d~-dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD--G~~L 276 (448)
T PRK04792 200 LMIADY-DGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD--GKKL 276 (448)
T ss_pred EEEEeC-CCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC--CCEE
Confidence 444443 333345566677889999999999988876543 2588999988875433222222234455554 3356
Q ss_pred EEEeeCCCe--EEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeC-CC--CEEEEEcCCCeEEEEeeCCCCCCcc
Q 009597 343 LLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHSMP 417 (531)
Q Consensus 343 l~sg~~dg~--I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~~v~ 417 (531)
+++...+|. |+++|+.+++.. .+..+........|+|+++.|+..+. ++ .|.++|+.++....... ......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~~~~ 353 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGEQNL 353 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCCCCc
Confidence 666666774 788898877654 34445556778899999998877664 34 46666777665433322 222334
Q ss_pred EEEEeCCCCEEEEEEcC-C--eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC-C--cEEEEECCC
Q 009597 418 SISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-G--KCWFWDWKS 491 (531)
Q Consensus 418 ~v~~sp~~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g--~I~iwd~~~ 491 (531)
..+|+|+|++|+..+.+ + .|.++|+.++... . +.... ......|+|+|++|+..+.+ | .|++++. +
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~---lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-V---LTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-E---ccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 57899999998877654 3 4566777665321 1 11111 11125799999988776543 3 3777786 5
Q ss_pred CeEEEEeeccCCcEEEEEEec
Q 009597 492 CKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 492 ~~~~~~~~~h~~~V~~v~~~p 512 (531)
++....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 666677776667778889987
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=3.9e-11 Score=128.56 Aligned_cols=195 Identities=15% Similarity=0.239 Sum_probs=155.4
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc--eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEc
Q 009597 290 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 367 (531)
Q Consensus 290 l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~ 367 (531)
..+.-....++.+..+..+-+||...+.....+...... +.....-+....-++++|+.-+.|.+|+....+.-..+.
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 344445667888888889999999888777766555443 223333344455789999999999999987443333688
Q ss_pred ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcce
Q 009597 368 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 447 (531)
Q Consensus 368 ~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~ 447 (531)
+|.+.|..+.|+-+|+++++.|+|.++|+|++.+........-+|..++..++|+|+ .+++++.|.+.++|+.... .
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~-~ 249 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT-Q 249 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccc-e
Confidence 999999999999999999999999999999999987766444569999999999998 8999999999999976542 2
Q ss_pred eceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009597 448 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 448 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 491 (531)
+ ..+.+|.. ..+..++..++...+++++.||.+++||+..
T Consensus 250 l---~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 250 L---EVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred e---hhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 2 36677763 4588899999999999999999999999753
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=8.5e-10 Score=112.09 Aligned_cols=189 Identities=20% Similarity=0.262 Sum_probs=149.2
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCcEEEEccCC----CcceEEEEcc--C---------------CCCCcEEEEeeCCCeE
Q 009597 294 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTG----KIPYVVKLNP--D---------------DDKQNILLAGMSDKKI 352 (531)
Q Consensus 294 pdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~----~~~~~~~~~~--~---------------~~~~~~l~sg~~dg~I 352 (531)
|...+||....||.++||++.+++....|... ....+..|.. . ..+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999999887777432 1122222211 1 1223578899999999
Q ss_pred EEEECCCCceeEEEc--ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEE
Q 009597 353 VQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 430 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~--~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s 430 (531)
.+|++..+++...+. .|.+.|+++.++.+-..|.+++.|+.+..|+....+.+..... ....+.+++++|++..+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-QKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-CCCccceEEEcCCCCEEEe
Confidence 999999999988875 6999999999999999999999999999999998877766643 6778999999999999998
Q ss_pred EEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-----CCEEEEEe-CCCcEEEEECC
Q 009597 431 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-----GRFVMSGD-GEGKCWFWDWK 490 (531)
Q Consensus 431 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~~l~sgs-~dg~I~iwd~~ 490 (531)
++ ++|.+||+.+++. +..|.||. +.|.++.|..+ |.+++++. .+..|.+|-+.
T Consensus 162 as--~~ik~~~~~~kev---v~~ftgh~--s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEV---VITFTGHG--SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cc--ceEEEEEccCceE---EEEecCCC--cceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 76 7899999999854 47789994 66888998876 77777654 45567777543
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.28 E-value=1.1e-08 Score=104.18 Aligned_cols=246 Identities=11% Similarity=0.237 Sum_probs=157.4
Q ss_pred ccCceEEEEEccCCCEEEEEec----CCeEEEEeCCCC--c--EEEEcc-CCCcceEEEEccCCCCCcEEEEeeCCCeEE
Q 009597 283 HSKAVRDISFCNDGTKFLTASY----DKNIKYWDTETG--Q--VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIV 353 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~----Dg~I~vWd~~t~--~--~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~ 353 (531)
-......|+++|++++|.++.. ++.|..|++... + .+.... .+..+..+.+.++ ...++++...+|.|.
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVS 112 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEE
Confidence 3445678999999999998876 568999988653 3 334443 4444555555554 335556666799999
Q ss_pred EEECCC-CceeEE---Ec----------ccCCCeeEEEEecCCCEEEEEeC-CCCEEEEEcCCCe--E--EEEeeCCCCC
Q 009597 354 QWDMNT-KEITQE---YD----------QHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPV--V--IKYISEPHMH 414 (531)
Q Consensus 354 iwd~~t-~~~~~~---~~----------~h~~~I~~l~~sp~~~~l~s~s~-Dg~I~iwd~~~~~--~--~~~~~~~~~~ 414 (531)
++++.. +.+... +. .......++.|+|+++++++... ...|.+|++.... . ...+..+...
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 999976 433222 21 11245779999999998887653 3469999987654 2 2334445666
Q ss_pred CccEEEEeCCCCEEEEEE-cCCeEEEEEcC--Ccc--eeceeeeecC-CccccceEEEEEcCCCCEEEEEe-CCCcEEEE
Q 009597 415 SMPSISLHPNTNWLAAQS-LDNQILIYSTR--ERF--QLNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGD-GEGKCWFW 487 (531)
Q Consensus 415 ~v~~v~~sp~~~~l~s~s-~Dg~I~iwd~~--~~~--~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~sgs-~dg~I~iw 487 (531)
....++|+|+++++.+.. .++.|.+|++. .+. .+.....+.. .........|.++|||++|+++. ..+.|.+|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 788999999999887665 56789999987 221 1122222211 11112567799999999998876 56789999
Q ss_pred ECC--CC--eEEEEeeccCCcEEEEEEecCCCCEEEEEe-CCCCEEeeC
Q 009597 488 DWK--SC--KVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 531 (531)
Q Consensus 488 d~~--~~--~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s-~Dg~I~iWD 531 (531)
++. ++ +.+..+.........++++| ++++|+++. .++.|.+|+
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp EECTTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEE
Confidence 983 23 34444544444578999999 566666554 567788763
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=1.5e-10 Score=110.22 Aligned_cols=249 Identities=16% Similarity=0.277 Sum_probs=179.3
Q ss_pred cCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEe-CCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCe
Q 009597 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD-TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 351 (531)
Q Consensus 273 ~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd-~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 351 (531)
...+++.++||...|++...-|-..-+++.+.|.+++||- .+.++.-..+....+..+....... ....|++|-..|+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGT 91 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecce
Confidence 3456788999999999999988777799999999999994 4556655555443333333333322 3367999999999
Q ss_pred EEEEEC----CCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEE-EeeCCCCCCccEEEEeCCCC
Q 009597 352 IVQWDM----NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK-YISEPHMHSMPSISLHPNTN 426 (531)
Q Consensus 352 I~iwd~----~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~v~~v~~sp~~~ 426 (531)
+.-+.+ +....++.+..|...|..+.|+-...++++++.|+.+.---.+.+..+. +... ...+++.+.-.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~---~~~t~~~~d~~-- 166 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE---TPASALQFDAL-- 166 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee---ccCCCCceeeE--
Confidence 998865 4456677888999999999999999999999999876533333332221 1111 11111111111
Q ss_pred EEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEeeccCCcE
Q 009597 427 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVC 505 (531)
Q Consensus 427 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~V 505 (531)
+...|...|.|.+-.+... .+..+..+.+|. +.+.+++|.+....|++|..|..+.+||+.-.+ ....+.+|...|
T Consensus 167 ~~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h~--~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQN-GCQLITTFNGHT--GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred EEEecccccceEEEEEeec-CCceEEEEcCcc--cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 5566667777777665432 234556778885 458889999999999999999999999997544 345667899999
Q ss_pred EEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 506 IGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 506 ~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
..+...+ ....+++++.||.|-+||
T Consensus 244 ~~l~~~~-~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 244 QALSYAQ-HTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhhhhh-hheeeeeccCCCeEEEEe
Confidence 8888877 677899999999999997
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=2.9e-09 Score=111.50 Aligned_cols=207 Identities=12% Similarity=0.097 Sum_probs=130.1
Q ss_pred CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEee--CCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCC
Q 009597 306 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 383 (531)
Q Consensus 306 g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~--~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~ 383 (531)
..|.+||....................|++++. .++++.. .+..|.+|++.+++.... ....+.+..+.|+|+|+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~--~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCC
Confidence 478888887655433333333445566666442 3443332 345799999988764332 22334456789999999
Q ss_pred EEEEE-eCCC--CEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcC-C--eEEEEEcCCcceeceeeeecCC
Q 009597 384 RFVTS-SDDK--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAGH 457 (531)
Q Consensus 384 ~l~s~-s~Dg--~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~ 457 (531)
.|+.. +.+| .|.+||+.++...... . +...+....|+|+|+.|+..+.+ + .|.++++.++.. ..+ ...+
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt-~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~l-t~~~- 330 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVT-D-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRI-TWEG- 330 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEcc-C-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEe-ecCC-
Confidence 88765 4455 4888999887654332 2 34467889999999988877754 4 455556655422 111 1111
Q ss_pred ccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCC
Q 009597 458 IVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 526 (531)
Q Consensus 458 ~~~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~ 526 (531)
.......|+|||++|+..+.+ ..|++||+.+++.. .+... .......|+| ++..|+.++.++.
T Consensus 331 ---~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~Sp-DG~~i~~~s~~~~ 396 (429)
T PRK03629 331 ---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAP-NGTMVIYSSSQGM 396 (429)
T ss_pred ---CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECC-CCCEEEEEEcCCC
Confidence 223458899999999876543 35889999887643 33321 2234678999 7777877777764
No 240
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=1.7e-08 Score=100.99 Aligned_cols=259 Identities=15% Similarity=0.097 Sum_probs=160.5
Q ss_pred ceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEec----------CCeEEEEeCCCCcEEEEccCCCcce----
Q 009597 264 EHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTGKIPY---- 329 (531)
Q Consensus 264 ~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~----------Dg~I~vWd~~t~~~i~~~~~~~~~~---- 329 (531)
+.+.+.+..+++.+.++..-..+-. + ++|||+.|+.|.. +..|.+||+.+++.+..+..+..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 6788888888999888875544433 5 9999998887765 7899999999999999988654433
Q ss_pred ----EEEEccCCCCCcEEEEeeC-CCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC-e
Q 009597 330 ----VVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-V 403 (531)
Q Consensus 330 ----~~~~~~~~~~~~~l~sg~~-dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~-~ 403 (531)
.+.+++++. .++++--. +..|.+.|+.+++.+.++.... ...-...+ +...+ +-+.||......+... +
T Consensus 105 ~~~~~~~ls~dgk--~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNK--TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCC--EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCccE-EEeecCceEEEEecCCCc
Confidence 566666442 34444434 8999999999999999887532 11122222 22222 2233454444333221 1
Q ss_pred E-EEE--eeCCCCCCc-cEEEEeC-CCCEEEEEEcCCeEEEEEcCCccee--ceeeeecC-----CccccceEEEEEcCC
Q 009597 404 V-IKY--ISEPHMHSM-PSISLHP-NTNWLAAQSLDNQILIYSTRERFQL--NKKKRFAG-----HIVAGYACQVNFSPD 471 (531)
Q Consensus 404 ~-~~~--~~~~~~~~v-~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~~~-----~~~~~~v~~l~~spd 471 (531)
. ... +......++ ..-.|.+ +++++.+... |+|.+.|+...... ..+..+.. .-..+.+.-++++++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence 1 111 100000000 0004455 7888777666 99999996543211 11111111 111223334999999
Q ss_pred CCEEEEEe----------CCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEE-eCCCCEEeeC
Q 009597 472 GRFVMSGD----------GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 531 (531)
Q Consensus 472 g~~l~sgs----------~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~-s~Dg~I~iWD 531 (531)
++.+++.. ..+.|.++|..+++.+..+.. ...+..++++|++..+|++. ..++.|.+.|
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 99988843 224799999999999999874 34678999999544255544 4678888876
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.4e-09 Score=113.82 Aligned_cols=203 Identities=14% Similarity=0.125 Sum_probs=123.3
Q ss_pred CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeC-C--CeEEEEECCCCceeEEEcccCCCeeEEEEecCC
Q 009597 306 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS-D--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 382 (531)
Q Consensus 306 g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-d--g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~ 382 (531)
..|.++|....................|++++ ..|+..+. + ..|.+||+.+++... +....+.+.+..|+|+|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG---~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDG---TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCC---CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC
Confidence 46777776443333322333334445566543 34444432 2 469999999887644 33334566789999999
Q ss_pred CEEE-EEeCCCCEEEEEc--CCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc-CCeEEEEEc--CCcceeceeeeecC
Q 009597 383 RRFV-TSSDDKSLRVWEF--GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYST--RERFQLNKKKRFAG 456 (531)
Q Consensus 383 ~~l~-s~s~Dg~I~iwd~--~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~-Dg~I~iwd~--~~~~~~~~~~~~~~ 456 (531)
+.|+ +.+.++...||.+ ..+. ...+.. +........|+|+|+.|+..+. ++...||.+ .++. ...+ .+.+
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~l-t~~g 327 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRV-TFTG 327 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCC-cEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEE-ecCC
Confidence 9886 5677887666654 4443 333332 3445667899999998886654 455666654 3332 1111 1222
Q ss_pred CccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeC
Q 009597 457 HIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523 (531)
Q Consensus 457 ~~~~~~v~~l~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~ 523 (531)
.......|||+|++|+..+.++ .|++||+.+++... +..+ .......|+| +++.|+.++.
T Consensus 328 ----~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~sp-dg~~l~~~~~ 390 (427)
T PRK02889 328 ----SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAP-NGRYILYATQ 390 (427)
T ss_pred ----CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECC-CCCEEEEEEe
Confidence 2233478999999998776554 69999998876543 3322 2346789999 5555555443
No 242
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.22 E-value=1.4e-09 Score=101.76 Aligned_cols=240 Identities=23% Similarity=0.340 Sum_probs=162.0
Q ss_pred ccCceEEEEEcc---CCC-EEEEEecCCeEEEEeCCCCcEEEEccC---CCcc--eEEEEccCCCCCcEEEEeeCCCeEE
Q 009597 283 HSKAVRDISFCN---DGT-KFLTASYDKNIKYWDTETGQVIRTFST---GKIP--YVVKLNPDDDKQNILLAGMSDKKIV 353 (531)
Q Consensus 283 H~~~V~~l~fsp---dg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~---~~~~--~~~~~~~~~~~~~~l~sg~~dg~I~ 353 (531)
-++.+..+.|+- +|. .|+-+..+|.|.++..........+.. .... .++++.+... +.-++++..+|.+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~-~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTS-GTKIFVSDSRGSIS 146 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeecc-CceEEEEcCCCcEE
Confidence 345677777764 455 566777789999997654433333321 1111 2333333322 24488999999999
Q ss_pred EEECCCCc--eeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCe-EEEEeeCCCCCCccEEEEeC-CCCEE
Q 009597 354 QWDMNTKE--ITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHP-NTNWL 428 (531)
Q Consensus 354 iwd~~t~~--~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp-~~~~l 428 (531)
+-+..... .++.++.|.-+++...|+. +.+.+.+|++|+.+..||++.+. .+..-...|...|.++.-+| .+.+|
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred EEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceE
Confidence 66665543 3458899999999999986 44688999999999999999654 33332345788898988886 68899
Q ss_pred EEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC--CCEEEEEeCCCcEEEEECCC--Ce---EEEEeecc
Q 009597 429 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWKS--CK---VFRTLKCH 501 (531)
Q Consensus 429 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~l~sgs~dg~I~iwd~~~--~~---~~~~~~~h 501 (531)
++|+.|-.|++||.|+.... .+.+. ..+.|..+.++|. +.+|+++-.+| .+|-+... .+ .+...+.|
T Consensus 227 ~TGsYDe~i~~~DtRnm~kP----l~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h 300 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMGKP----LFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH 300 (339)
T ss_pred EEeccccceeeeehhcccCc----cccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc
Confidence 99999999999999953221 12222 3467999999995 33444444444 45555443 23 45566788
Q ss_pred CCcEEEEEEecCCCCEEEEEeC-CCCEE-ee
Q 009597 502 EGVCIGCEWHPLEQSKVATCGW-DGLIK-YW 530 (531)
Q Consensus 502 ~~~V~~v~~~p~~~~~l~t~s~-Dg~I~-iW 530 (531)
.+-+..-.|.. ...+|+||+. |..|+ +|
T Consensus 301 dSl~YG~DWd~-~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 301 DSLCYGGDWDS-KDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cceeecccccc-ccceeeeeeccccceeeee
Confidence 88888889965 4568999875 77755 66
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.8e-09 Score=109.80 Aligned_cols=185 Identities=13% Similarity=0.219 Sum_probs=145.0
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEcc---cCCCeeEEEEe------c--------------CCCEEEEEeCCCCEE
Q 009597 339 KQNILLAGMSDKKIVQWDMNTKEITQEYDQ---HLGAVNTITFV------D--------------SNRRFVTSSDDKSLR 395 (531)
Q Consensus 339 ~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~---h~~~I~~l~~s------p--------------~~~~l~s~s~Dg~I~ 395 (531)
...+++....||.+++|+...++..+.|.. -.+...+..|. | +...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 346789999999999999999988777743 22444555552 1 233678888899999
Q ss_pred EEEcCCCeEEEEee-CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCE
Q 009597 396 VWEFGIPVVIKYIS-EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 474 (531)
Q Consensus 396 iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 474 (531)
+|++..++....+. ..|...|.++.++.+-..|.+++.|+.+..|+......+. .+.... ..+.+++++|||..
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---~~~~~~--~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---IWKEQK--PLVSSLCISPDGKI 158 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee---eeccCC--CccceEEEcCCCCE
Confidence 99999998887776 6789999999999999999999999999999998865443 333332 33667999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecC-----CCCEEEEEeCCCCEEee
Q 009597 475 VMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL-----EQSKVATCGWDGLIKYW 530 (531)
Q Consensus 475 l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~-----~~~~l~t~s~Dg~I~iW 530 (531)
|++++ +.|.+||+.+++.+.+|.+|.++|.++.|.-. +..+|.+...+..|.+|
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 99886 47999999999999999999999999999873 23344444555556665
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.7e-09 Score=109.24 Aligned_cols=260 Identities=17% Similarity=0.223 Sum_probs=165.6
Q ss_pred hhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEE-----ecC-----CeEEEEeCCCCcEEE
Q 009597 251 KKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTA-----SYD-----KNIKYWDTETGQVIR 320 (531)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~-----s~D-----g~I~vWd~~t~~~i~ 320 (531)
++.+++.+- ..++.+++.....+..+.+...- .+.++.|+|-|++|.+- ..+ -.+.+|+++++....
T Consensus 43 S~~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s 119 (566)
T KOG2315|consen 43 SNNGRLFAY-SDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRS 119 (566)
T ss_pred cCCCcEEEE-EcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehh
Confidence 344444332 23445666666666544444433 79999999999988742 222 347799999966555
Q ss_pred EccCCCcc-eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCC--EEEE-----EeCCC
Q 009597 321 TFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR--RFVT-----SSDDK 392 (531)
Q Consensus 321 ~~~~~~~~-~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~--~l~s-----~s~Dg 392 (531)
.+...... ++..|+.+.. +++--..+.+++|++...+.+. -..|...|+.+.++|.+. .+++ .+.-+
T Consensus 120 ~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa 194 (566)
T KOG2315|consen 120 QIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPA 194 (566)
T ss_pred heehhhhcCcccccccchh----hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCc
Confidence 55443332 6666666543 5555566778888876533221 122455666666666421 2221 22233
Q ss_pred CEEEEEc---------------------------------------------------------CCCeEEEEeeCCCCCC
Q 009597 393 SLRVWEF---------------------------------------------------------GIPVVIKYISEPHMHS 415 (531)
Q Consensus 393 ~I~iwd~---------------------------------------------------------~~~~~~~~~~~~~~~~ 415 (531)
.|+||-+ ...... +.....++
T Consensus 195 ~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~--V~L~k~GP 272 (566)
T KOG2315|consen 195 SVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS--VPLLKEGP 272 (566)
T ss_pred EEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE--EecCCCCC
Confidence 4555443 211111 11224778
Q ss_pred ccEEEEeCCCCEEEE--EEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC---CCcEEEEECC
Q 009597 416 MPSISLHPNTNWLAA--QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWDWK 490 (531)
Q Consensus 416 v~~v~~sp~~~~l~s--~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~---dg~I~iwd~~ 490 (531)
|.++.|+|++.-|++ |-+-.++.|||++..-. ..+. .+.-+++-|+|.|++|+.++- .|.|-|||+.
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v----~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV----FDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcCCCCEe----EeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 999999999977665 45678999999986421 1121 233455899999999988763 5889999999
Q ss_pred CCeEEEEeeccCCcEEEEEEecCCCCEEEEEeC------CCCEEeeC
Q 009597 491 SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW------DGLIKYWD 531 (531)
Q Consensus 491 ~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~------Dg~I~iWD 531 (531)
+.+++..+.+... +-+.|+| ++.+|+|+.. |+.|+||+
T Consensus 345 n~K~i~~~~a~~t--t~~eW~P-dGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 345 NRKLIAKFKAANT--TVFEWSP-DGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred chhhccccccCCc--eEEEEcC-CCcEEEEEeccccEEecCCeEEEE
Confidence 9999999886554 5689999 7788888765 78899995
No 245
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=6.1e-09 Score=109.47 Aligned_cols=203 Identities=13% Similarity=0.143 Sum_probs=127.9
Q ss_pred CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEee--CCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCC
Q 009597 306 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 383 (531)
Q Consensus 306 g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~--~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~ 383 (531)
..|.+||....................|++++ ..++++.. .+..|.+||+.+++.. .+..+.+.+.+..|+|+|+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG--~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNR--QEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCC--CEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 47888887554443322233344555566643 23333332 2468999999888653 4445667788899999999
Q ss_pred EEE-EEeCCCC--EEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc-CC--eEEEEEcCCcceeceeeeecCC
Q 009597 384 RFV-TSSDDKS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DN--QILIYSTRERFQLNKKKRFAGH 457 (531)
Q Consensus 384 ~l~-s~s~Dg~--I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~ 457 (531)
.|+ +.+.++. |.+||+.++.... +.. +........|+|+|+.|+..+. +| .|.++|+..+.. ..+. ..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt---~~ 332 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRIS---FG 332 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEE-ccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEee---cC
Confidence 875 5555655 7777888775533 332 4455677999999999887764 33 688888765432 1211 11
Q ss_pred ccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEe
Q 009597 458 IVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 458 ~~~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s 522 (531)
.+.+....|+|+|++|+..+.+ ..|.+||+..+.. ..+. +...+....|+| +++.|+..+
T Consensus 333 --~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp-DG~~i~~~~ 395 (435)
T PRK05137 333 --GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP-NGRVIMFFR 395 (435)
T ss_pred --CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC-CCCEEEEEE
Confidence 1234457899999999876643 3688889765443 3332 223467889999 555554443
No 246
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=3.9e-09 Score=110.88 Aligned_cols=203 Identities=18% Similarity=0.186 Sum_probs=125.6
Q ss_pred CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeC---CCeEEEEECCCCceeEEEcccCCCeeEEEEecCC
Q 009597 306 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS---DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 382 (531)
Q Consensus 306 g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~ 382 (531)
..|.+||....................|+++ + ..|+..+. ...|++||+.+++... +..+.+...++.|+|+|
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpD--g-~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPD--G-KKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCC--C-CEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCC
Confidence 3688898865443332222333333444443 3 34554442 3479999998876543 33344556688999999
Q ss_pred CEEE-EEeCCC--CEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc-CCe--EEEEEcCCcceeceeeeecC
Q 009597 383 RRFV-TSSDDK--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DNQ--ILIYSTRERFQLNKKKRFAG 456 (531)
Q Consensus 383 ~~l~-s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~-Dg~--I~iwd~~~~~~~~~~~~~~~ 456 (531)
+.|+ +.+.++ .|.+||+.++.... +.. +.......+|+|+|+.|+..+. +|. |.++++.++.. ..+ .+.+
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~l-t~~g 335 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTR-LTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERL-TFQG 335 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEE-Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-ecCC
Confidence 9775 445555 59999998876433 322 3444567899999998887764 444 66667655432 111 1222
Q ss_pred CccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeC
Q 009597 457 HIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 523 (531)
Q Consensus 457 ~~~~~~v~~l~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~ 523 (531)
.....++|+|+|++|+..+.++ .|++||+.+++.. .+. +........|+| ++++|+..+.
T Consensus 336 ----~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~sp-dG~~i~~~s~ 398 (433)
T PRK04922 336 ----NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAP-NGSMVLYATR 398 (433)
T ss_pred ----CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECC-CCCEEEEEEe
Confidence 2233589999999998765433 5999999887754 333 333445679999 5665554443
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=8.1e-10 Score=111.53 Aligned_cols=203 Identities=16% Similarity=0.255 Sum_probs=139.5
Q ss_pred CCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEE----------------------------EcccC------
Q 009597 325 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE----------------------------YDQHL------ 370 (531)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~----------------------------~~~h~------ 370 (531)
......+.+.+ +++.++++|..--.|++||+..-.+... +..|.
T Consensus 51 p~ast~ik~s~--DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 51 PTASTRIKVSP--DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred ccccceeEecC--CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 33344445555 4558899999999999999865432111 01110
Q ss_pred -----CCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCc
Q 009597 371 -----GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 445 (531)
Q Consensus 371 -----~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~ 445 (531)
..-..++++.-..-|++++....|+-+++..+..+..+.. ....+.++..++-..+|++|+.+|.|..||.++.
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceEEEecchhh
Confidence 1112233332222244455555688889988877766654 5578999999999999999999999999999987
Q ss_pred ceeceeee------ecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-ccCCcEEEEEEecCCC-CE
Q 009597 446 FQLNKKKR------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQ-SK 517 (531)
Q Consensus 446 ~~~~~~~~------~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~-~~ 517 (531)
..+..+.. ..+......|+++.|+.+|-.+++|..+|.|.|||+++.+++..-. +..-+|..+.|.+.++ ..
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 65433321 2223334458999999999999999999999999999988876543 2345899999988433 45
Q ss_pred EEEEeCCCCEEeeC
Q 009597 518 VATCGWDGLIKYWD 531 (531)
Q Consensus 518 l~t~s~Dg~I~iWD 531 (531)
|+|+ ....++|||
T Consensus 288 v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 288 VVSM-DKRILKIWD 300 (703)
T ss_pred EEec-chHHhhhcc
Confidence 6555 456789997
No 248
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=8.5e-11 Score=117.64 Aligned_cols=185 Identities=18% Similarity=0.294 Sum_probs=128.0
Q ss_pred eEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEE
Q 009597 277 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 356 (531)
Q Consensus 277 ~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd 356 (531)
+..|.||...|+.++--.+.+-|++++.|++|++|.+... .+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~E--------------------gD~----------------- 770 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPE--------------------GDE----------------- 770 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccc--------------------cCc-----------------
Confidence 3455666666666655545555666666666666654320 000
Q ss_pred CCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEee-CCCCCCccEEEEeCC--CCEEEE-EE
Q 009597 357 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN--TNWLAA-QS 432 (531)
Q Consensus 357 ~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~--~~~l~s-~s 432 (531)
+.+..+..+|..|..+|.++.|..+.++++++ ||.|.+||--.+..+..+. .+..+.+..+..-++ ..++++ ++
T Consensus 771 ~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs 848 (1034)
T KOG4190|consen 771 IGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS 848 (1034)
T ss_pred cccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc
Confidence 12334667888999999999999988887765 7889999987776655333 233344444444443 344444 47
Q ss_pred cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 009597 433 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 500 (531)
Q Consensus 433 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 500 (531)
...+|+++|.+...-...++..........+.+++..+.|+.++++-.+|+|.+.|.++|+.+..+..
T Consensus 849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 88999999999876665555554444456688899999999999999999999999999998886654
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=9.6e-10 Score=118.12 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=144.2
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEcccCC----CeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCc
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEYDQHLG----AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 416 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~----~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v 416 (531)
..++.++.+..+.+||...+.....+..... ...-+-++++.-++++|+.-+.|.+|+........ ...+|.+.|
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~i 178 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSI 178 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecccCCce
Confidence 4688888899999999987776666543222 12223345566689999999999999987433332 334699999
Q ss_pred cEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 009597 417 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 496 (531)
Q Consensus 417 ~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~ 496 (531)
.++.++-+|.++++.+.|.++++|++.+...+. ....+|. ..+..++|.|+ .+++++.|.+.++|+.. +..+.
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHs--aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~ 251 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHS--ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLE 251 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC--ccccccc--ceeEEEEeccc--eeEEeccceEEEEEecc-cceeh
Confidence 999999999999999999999999999876553 3445664 55888999998 89999999999999754 45556
Q ss_pred EeeccCC-cEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 497 TLKCHEG-VCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 497 ~~~~h~~-~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.+..|.+ .|..++..+ +...++|++.||.|++||
T Consensus 252 ~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 252 VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhh
Confidence 8888865 788999988 888999999999999997
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=1.7e-09 Score=103.12 Aligned_cols=166 Identities=17% Similarity=0.321 Sum_probs=119.4
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEE
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 354 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 354 (531)
..++.+..|...|..+-|+-....+++++.|..+.---.+.+..+..+..........+.. .+...|...|.|.+
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~-----~~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA-----LYAFVGDHSGQITM 179 (404)
T ss_pred chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee-----EEEEecccccceEE
Confidence 4456666777777777777767777777777655444444444332221111110000100 13556666677766
Q ss_pred EEC--CCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEE
Q 009597 355 WDM--NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432 (531)
Q Consensus 355 wd~--~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s 432 (531)
..+ ..-.++.++.+|.+.+.+++|.+..++|.+|..|..+.+||+....-+......|.+.|..+...+.-+.+.+++
T Consensus 180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ 259 (404)
T KOG1409|consen 180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG 259 (404)
T ss_pred EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc
Confidence 654 345678899999999999999999999999999999999999887777777777999999999888889999999
Q ss_pred cCCeEEEEEcCCc
Q 009597 433 LDNQILIYSTRER 445 (531)
Q Consensus 433 ~Dg~I~iwd~~~~ 445 (531)
.||.|.+|++...
T Consensus 260 edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 260 EDGGIVVWNMNVK 272 (404)
T ss_pred CCCeEEEEeccce
Confidence 9999999998754
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=3.7e-08 Score=102.92 Aligned_cols=237 Identities=11% Similarity=0.110 Sum_probs=143.5
Q ss_pred eeeeeecccCeeeEEecCccCceEEEEEccCCCE--E-EEEecC--CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCC
Q 009597 265 HVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTK--F-LTASYD--KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 339 (531)
Q Consensus 265 ~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~--l-~s~s~D--g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~ 339 (531)
.+++.+.. |...+.+..+...+.+-+|+|||+. + ++...+ ..|.+.++.+++...............|++++.
T Consensus 166 ~l~~~d~d-G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~- 243 (428)
T PRK01029 166 ELWSVDYD-GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK- 243 (428)
T ss_pred eEEEEcCC-CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC-
Confidence 45555543 3333445556667788899999975 2 233333 357888988876544433333334455666443
Q ss_pred CcEEEEeeCCC----eEEEEECCCC---ceeEEEcccCCCeeEEEEecCCCEEEEEe-CCCCEEEEE--cCC-CeEEEEe
Q 009597 340 QNILLAGMSDK----KIVQWDMNTK---EITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWE--FGI-PVVIKYI 408 (531)
Q Consensus 340 ~~~l~sg~~dg----~I~iwd~~t~---~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~Dg~I~iwd--~~~-~~~~~~~ 408 (531)
.++++...+| .+.+|++..+ ...+....+.+......|+|+|+.|+..+ .+|...||. +.. +.....+
T Consensus 244 -~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 244 -LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred -EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 4555543333 3444777653 33333333334456789999999888766 466555554 432 2223333
Q ss_pred eCCCCCCccEEEEeCCCCEEEEEEcC---CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC---CC
Q 009597 409 SEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EG 482 (531)
Q Consensus 409 ~~~~~~~v~~v~~sp~~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~---dg 482 (531)
.. ....+....|+|+|+.|+..+.+ ..|.+||+.++.... +... ...+....|+|||++|+.... ..
T Consensus 323 t~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----Lt~~--~~~~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 323 TK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----LTTS--PENKESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred cc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----ccCC--CCCccceEECCCCCEEEEEECCCCCc
Confidence 32 34566789999999999877654 379999998764321 1111 122455889999998875432 35
Q ss_pred cEEEEECCCCeEEEEeeccCCcEEEEEEec
Q 009597 483 KCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 483 ~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p 512 (531)
.|+++|+..++...... ..+.+...+|+|
T Consensus 396 ~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~ 424 (428)
T PRK01029 396 ELYLISLITKKTRKIVI-GSGEKRFPSWGA 424 (428)
T ss_pred eEEEEECCCCCEEEeec-CCCcccCceecC
Confidence 68999998876544433 445567788988
No 252
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.11 E-value=5.7e-08 Score=100.21 Aligned_cols=252 Identities=16% Similarity=0.122 Sum_probs=162.1
Q ss_pred CCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEE--EccCC
Q 009597 260 GEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK--LNPDD 337 (531)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~--~~~~~ 337 (531)
+..++.+..++..+|+.+....... .+.+.-.. .+..++.++.++.|..||.++|+.+..+.......... ..+.-
T Consensus 111 ~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~ 188 (377)
T TIGR03300 111 GTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI 188 (377)
T ss_pred EcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE
Confidence 3456678888888888887665332 22221111 24467777889999999999999988775543321111 01100
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCceeEEEcccCC-------C---e-eEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 009597 338 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-------A---V-NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 406 (531)
Q Consensus 338 ~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~-------~---I-~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 406 (531)
.. ..++.+..++.+..+|.++++.+........ . + .+..+ .+..+++++.+|.+..||..+++.+.
T Consensus 189 ~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 189 AD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLW 265 (377)
T ss_pred EC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEE
Confidence 11 3578888899999999999987765432110 0 1 11112 35578888889999999999987665
Q ss_pred EeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 009597 407 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 486 (531)
Q Consensus 407 ~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~i 486 (531)
.... ....... ..+..+++++.+|.|..+|..++..+.....+.+.... .... .+..|++++.+|.|++
T Consensus 266 ~~~~---~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s----sp~i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 266 KRDA---SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT----APAV--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred eecc---CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccc----cCEE--ECCEEEEEeCCCEEEE
Confidence 4432 1111222 24677888889999999999888655433222222111 1112 3678999999999999
Q ss_pred EECCCCeEEEEeeccCCcEEE-EEEecCCCCEEEEEeCCCCEEee
Q 009597 487 WDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 487 wd~~~~~~~~~~~~h~~~V~~-v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+|..+++.+.++..+...+.. .++. + ..|+.++.||.|..|
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEEE--C-CEEEEEeCCceEEEe
Confidence 999999999999877654333 3333 3 358888999998765
No 253
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.10 E-value=1.7e-08 Score=102.93 Aligned_cols=187 Identities=12% Similarity=0.129 Sum_probs=125.3
Q ss_pred cEE-EEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEE
Q 009597 341 NIL-LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 419 (531)
Q Consensus 341 ~~l-~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v 419 (531)
+++ ++-..++.|.+.|..+.+.+..+......-..+.|+|+++++++++.||.|.++|+.+.+.+..+.. .....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceE
Confidence 455 4556789999999999999999987655545678999999999999999999999999999988864 4457889
Q ss_pred EEeCCCCEEEEEE-cCCeEEEEEcCCcceeceeeeec--CCccccceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEE
Q 009597 420 SLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFA--GHIVAGYACQVNFSPDGRF-VMSGDGEGKCWFWDWKSCKVF 495 (531)
Q Consensus 420 ~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~--~~~~~~~v~~l~~spdg~~-l~sgs~dg~I~iwd~~~~~~~ 495 (531)
+++++|+++++++ ..+.+.++|..+.+.+..+.... .......+..+..+|.... +++--+.+.|.+.|....+.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 9999999998775 68999999999876664433211 1112345667878888884 445555689999998765433
Q ss_pred --EEeeccCCcEEEEEEecCCCCEEEEE-eCCCCEEeeC
Q 009597 496 --RTLKCHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 531 (531)
Q Consensus 496 --~~~~~h~~~V~~v~~~p~~~~~l~t~-s~Dg~I~iWD 531 (531)
..+. .........|+| ++++++.+ -.+..|-++|
T Consensus 164 ~~~~i~-~g~~~~D~~~dp-dgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 164 KVTTIK-VGRFPHDGGFDP-DGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp EEEEEE---TTEEEEEE-T-TSSEEEEEEGGGTEEEEEE
T ss_pred ceeeec-ccccccccccCc-ccceeeecccccceeEEEe
Confidence 2333 344567889999 66665543 4455565554
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.09 E-value=4.9e-07 Score=92.02 Aligned_cols=245 Identities=14% Similarity=0.226 Sum_probs=149.6
Q ss_pred CCceeeeeeccc--C--eeeEEecCccCceEEEEEccCCCEEEEEec-CCeEEEEeCCC-CcEEEE---cc---------
Q 009597 262 KGEHVEDKSTFH--G--KCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTET-GQVIRT---FS--------- 323 (531)
Q Consensus 262 ~~~~i~~~~~~~--~--~~~~~l~gH~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~~t-~~~i~~---~~--------- 323 (531)
..+.|..+.... + +.+............++++|++++|+++.+ +|.|.++++.. +..... +.
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence 344555555443 2 334444434455678999999999998875 89999999976 443322 21
Q ss_pred --CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc--ee--EEEc-ccCCCeeEEEEecCCCEEEEEe-CCCCEE
Q 009597 324 --TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--IT--QEYD-QHLGAVNTITFVDSNRRFVTSS-DDKSLR 395 (531)
Q Consensus 324 --~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~--~~--~~~~-~h~~~I~~l~~sp~~~~l~s~s-~Dg~I~ 395 (531)
....+..+.+.+ +...++++.-....|.+|++.... +. ..+. .....-..+.|+|+++++.+.. .++.|.
T Consensus 140 rq~~~h~H~v~~~p--dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 140 RQEGPHPHQVVFSP--DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TTSSTCEEEEEE-T--TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ccccccceeEEECC--CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 122234455555 343566666666789999997654 32 2232 2334568999999999876655 577899
Q ss_pred EEEcC--CCe--EEEEeeCC---C--CCCccEEEEeCCCCEEEEEEc-CCeEEEEEcCC-cceeceeeeecCCccccceE
Q 009597 396 VWEFG--IPV--VIKYISEP---H--MHSMPSISLHPNTNWLAAQSL-DNQILIYSTRE-RFQLNKKKRFAGHIVAGYAC 464 (531)
Q Consensus 396 iwd~~--~~~--~~~~~~~~---~--~~~v~~v~~sp~~~~l~s~s~-Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~ 464 (531)
++++. .+. .+..+... . ......++++|+|++|.+... .+.|.+|++.. ...+......... .....
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr 295 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPR 295 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEE
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCcc
Confidence 99988 332 22333221 1 124678999999999888764 56899999943 2233333333221 23467
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEEC--CCCeEEEEee-ccCCcEEEEEE
Q 009597 465 QVNFSPDGRFVMSGD-GEGKCWFWDW--KSCKVFRTLK-CHEGVCIGCEW 510 (531)
Q Consensus 465 ~l~~spdg~~l~sgs-~dg~I~iwd~--~~~~~~~~~~-~h~~~V~~v~~ 510 (531)
.+.++|+|++|+++. .++.|.+|++ .+|.+...-. ..-....|+.|
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 799999999999887 5668888865 5777654432 22334556655
No 255
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.08 E-value=3.5e-08 Score=91.32 Aligned_cols=223 Identities=10% Similarity=0.013 Sum_probs=145.2
Q ss_pred EEEEEcc-----CCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc--eEEEEccCCCCCcEEEEeeCCCeEEEEECCCC
Q 009597 288 RDISFCN-----DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 360 (531)
Q Consensus 288 ~~l~fsp-----dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~ 360 (531)
..+.|.| .-.+|+.|+.-|...+|...+.+....+-..+.. ....-..+ ...-+..++.|.++++.++.-+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd--~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCD--LKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcc--cccceeeccCCcceeEEEEecC
Confidence 3455555 3347899999999999999876554333211111 11111111 1123677788888888887654
Q ss_pred ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC-e-EEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEE
Q 009597 361 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-V-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 438 (531)
Q Consensus 361 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~-~-~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~ 438 (531)
..........-.++++.++++++++++.++...|..|.+... . ..+....+....-.+..|+.....+|++..||++.
T Consensus 149 s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 149 SNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCA 228 (344)
T ss_pred cccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEE
Confidence 333222211123889999999999999999999999988653 2 22322334555667889999999999999999999
Q ss_pred EEEcCCcceeceeeeecCCccccceEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeEEEEeeccC--------CcEEEE
Q 009597 439 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWKSCKVFRTLKCHE--------GVCIGC 508 (531)
Q Consensus 439 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~--------~~V~~v 508 (531)
|||++..........-......+.+..+.|++.|. +|...-.-+.+.+.|+++++....+.... ..|...
T Consensus 229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT 308 (344)
T ss_pred EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc
Confidence 99999754332222222222467788899998654 45555566789999999987665554322 236666
Q ss_pred EEec
Q 009597 509 EWHP 512 (531)
Q Consensus 509 ~~~p 512 (531)
.|+.
T Consensus 309 ~f~~ 312 (344)
T KOG4532|consen 309 NFNN 312 (344)
T ss_pred cccC
Confidence 7766
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.07 E-value=7e-08 Score=100.91 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=124.8
Q ss_pred CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC---CeEEEEECCCCceeEEEcccCCCeeEEEEecCC
Q 009597 306 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD---KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 382 (531)
Q Consensus 306 g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~ 382 (531)
..|.++|....................++++ . ..|+.+... ..|++||+.+++... +..+.+.+.++.|+|++
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spd--g-~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPD--G-QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDG 245 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCC--C-CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC
Confidence 4577777754443333322222333444443 3 345544432 489999998886543 33455667789999999
Q ss_pred CEEEE-EeCCC--CEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcC-C--eEEEEEcCCcceeceeeeecC
Q 009597 383 RRFVT-SSDDK--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAG 456 (531)
Q Consensus 383 ~~l~s-~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~ 456 (531)
+.|+. .+.++ .|.+||+.++.... +.. +........|+|++++|+..+.. + .|.++++.++... .+..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~ 319 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTR-LTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTF 319 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEE-CCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----Eeec
Confidence 97764 44444 58889988775433 222 33445577899999988876643 3 5777887664321 1211
Q ss_pred CccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCC
Q 009597 457 HIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 524 (531)
Q Consensus 457 ~~~~~~v~~l~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~D 524 (531)
+ ......+.|+|+|++|+.++.++ .|.+||+.++... .+..+ .......|+| ++..|+..+.+
T Consensus 320 ~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~sp-dg~~l~~~~~~ 385 (417)
T TIGR02800 320 R--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAP-NGRMILYATTR 385 (417)
T ss_pred C--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECC-CCCEEEEEEeC
Confidence 1 23345588999999999888765 7899998876542 23222 2234568999 55555555444
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=4.7e-08 Score=102.15 Aligned_cols=217 Identities=11% Similarity=0.050 Sum_probs=122.0
Q ss_pred eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC--CeEEEEECCCCceeEEEcccCCCeeEEEEecCCCE
Q 009597 307 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 384 (531)
Q Consensus 307 ~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~ 384 (531)
.|.+.|...+..............-.|+|++....++++...+ ..|.+.++.+++..+.. ...+......|+|||+.
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCE
Confidence 4555555444332221122223334566655432243444444 46888899877644333 23455567899999998
Q ss_pred EEEEeC-CC----CEEEEEcCCC--eEEEEeeCCCCCCccEEEEeCCCCEEEEEE-cCCeEEEE--EcCC-cceeceeee
Q 009597 385 FVTSSD-DK----SLRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIY--STRE-RFQLNKKKR 453 (531)
Q Consensus 385 l~s~s~-Dg----~I~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s-~Dg~I~iw--d~~~-~~~~~~~~~ 453 (531)
|+..+. +| .+.+|++..+ .....+...........+|+|+|+.|+..+ .+|...|| ++.. +... ..
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~---~~ 321 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP---RL 321 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce---EE
Confidence 887653 22 3444676542 122233322223456789999999888766 45654555 4432 1111 11
Q ss_pred ecCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEE-EEeCC--CCE
Q 009597 454 FAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA-TCGWD--GLI 527 (531)
Q Consensus 454 ~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~-t~s~D--g~I 527 (531)
+... ...+....|||||+.|+..+.+ ..|++||+.+++... +......+....|+| +++.|+ ++... ..|
T Consensus 322 lt~~--~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKK--YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAI-DSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccC--CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECC-CCCEEEEEECCCCCceE
Confidence 2222 1234568899999998876543 469999999887644 332334567899999 555544 44433 345
Q ss_pred EeeC
Q 009597 528 KYWD 531 (531)
Q Consensus 528 ~iWD 531 (531)
.+||
T Consensus 398 ~~vd 401 (428)
T PRK01029 398 YLIS 401 (428)
T ss_pred EEEE
Confidence 5553
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=1.8e-07 Score=107.52 Aligned_cols=239 Identities=15% Similarity=0.163 Sum_probs=153.6
Q ss_pred EEEEEccC-CCEEEEEecCCeEEEEeCCCCcEEEEccC-C--------------CcceEEEEccCCCCCcEEEEeeCCCe
Q 009597 288 RDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFST-G--------------KIPYVVKLNPDDDKQNILLAGMSDKK 351 (531)
Q Consensus 288 ~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~--------------~~~~~~~~~~~~~~~~~l~sg~~dg~ 351 (531)
..++++++ +..+++-+..+.|++||.. +..+..+.. + ..+..+.+... ++.++++-...+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCce
Confidence 46788774 6677777788899999975 454444432 1 12344444443 2234555556678
Q ss_pred EEEEECCCCceeEEEccc-----------------CCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC--
Q 009597 352 IVQWDMNTKEITQEYDQH-----------------LGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEP-- 411 (531)
Q Consensus 352 I~iwd~~t~~~~~~~~~h-----------------~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-- 411 (531)
|+++|+.++. +.++.+- ...-..++++| ++..+++.+.++.|++||...+........+
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999987764 3333110 11235799999 5666777788899999999877543221110
Q ss_pred -----------CCCCccEEEEeCCCCEE-EEEEcCCeEEEEEcCCcceecee----------eeecCC------ccccce
Q 009597 412 -----------HMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKK----------KRFAGH------IVAGYA 463 (531)
Q Consensus 412 -----------~~~~v~~v~~sp~~~~l-~s~s~Dg~I~iwd~~~~~~~~~~----------~~~~~~------~~~~~v 463 (531)
.......++++|++..| ++-+.++.|++||+.++...... ..+... ..-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 11235679999998854 45556789999998764321000 000000 001123
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-------------ccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-------------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 464 ~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~-------------~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
..++++++|.++++-..++.|++||..++....... +.-.....+++++ ++.++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 468999999988888899999999998876654321 1112467899999 67888888899999999
Q ss_pred C
Q 009597 531 D 531 (531)
Q Consensus 531 D 531 (531)
|
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 7
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=4.3e-09 Score=100.36 Aligned_cols=242 Identities=15% Similarity=0.253 Sum_probs=154.7
Q ss_pred HHHHHHHhhhhccCCCCCCCceeeeeecccCe-----eeEEecCcc------------CceEEEEEccCC--CEEEEEec
Q 009597 244 YAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGK-----CMRTYMGHS------------KAVRDISFCNDG--TKFLTASY 304 (531)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~l~gH~------------~~V~~l~fspdg--~~l~s~s~ 304 (531)
.+.++.....++.+++|.++|.+....-.... ....++.|. ..|..|.|.+++ ..++..+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 34566677888999999999988876543322 344555554 468999999865 45777888
Q ss_pred CCeEEEEeCCCCc-----------------------------------EEEEccCCCcceEEEEccCCCCCcEEEEeeCC
Q 009597 305 DKNIKYWDTETGQ-----------------------------------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 349 (531)
Q Consensus 305 Dg~I~vWd~~t~~-----------------------------------~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 349 (531)
|++|++|.+.... +.+.+...|.-.+-+++...+. ..+ ....|
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~-lSADd 184 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETF-LSADD 184 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceE-eeccc
Confidence 9999999874311 1122223333334444444443 233 34457
Q ss_pred CeEEEEECCCCce---eEEEccc-----CCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEE----EEeeC------
Q 009597 350 KKIVQWDMNTKEI---TQEYDQH-----LGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVI----KYISE------ 410 (531)
Q Consensus 350 g~I~iwd~~t~~~---~~~~~~h-----~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~----~~~~~------ 410 (531)
=.|.+|+++-... +..++.+ ..-|++..|+| ..+.|+-.+..|+|++-|++..... +.+..
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 7899999853321 2222333 24688889999 4567888889999999999853221 11111
Q ss_pred -----CCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC-cceeceeeeecCCcc----------c---cceEEEEEcCC
Q 009597 411 -----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIV----------A---GYACQVNFSPD 471 (531)
Q Consensus 411 -----~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~----------~---~~v~~l~~spd 471 (531)
.-..+|..+.|+++|+++++-. --+|++||+.. ...+. .+.-|.. . -.-..++|+-+
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~---t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVE---TYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcce---EEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1234688999999999998733 26899999953 32222 2221210 0 01123789999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 009597 472 GRFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 472 g~~l~sgs~dg~I~iwd~~~ 491 (531)
+.++++|+....+++++...
T Consensus 341 ~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cceEecccccceEEEecCCC
Confidence 99999999999999999543
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.03 E-value=5.5e-07 Score=90.21 Aligned_cols=229 Identities=11% Similarity=0.103 Sum_probs=150.3
Q ss_pred CCCCCCceeeeeecccCeeeEEecCc-------cCceEEEEEccCCCEEEEEe-c-CCeEEEEeCCCCcEEEEccCCCcc
Q 009597 258 AGGEKGEHVEDKSTFHGKCMRTYMGH-------SKAVRDISFCNDGTKFLTAS-Y-DKNIKYWDTETGQVIRTFSTGKIP 328 (531)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~~~l~gH-------~~~V~~l~fspdg~~l~s~s-~-Dg~I~vWd~~t~~~i~~~~~~~~~ 328 (531)
..|..+..|.+++..+.+.+..+.-- ...-..++++|||++|+... . +..|.+.|+.+++.+..+......
T Consensus 71 ~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~ 150 (352)
T TIGR02658 71 ARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY 150 (352)
T ss_pred ccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc
Confidence 34567789999999999999888742 22344889999999988766 3 689999999999999999875544
Q ss_pred eEEEEccCCCCCcEEEEeeCCCeEEEEECCC-Cce-eEE---EcccCCCeeE-EEEec-CCCEEEEEeCCCCEEEEEcCC
Q 009597 329 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEI-TQE---YDQHLGAVNT-ITFVD-SNRRFVTSSDDKSLRVWEFGI 401 (531)
Q Consensus 329 ~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t-~~~-~~~---~~~h~~~I~~-l~~sp-~~~~l~s~s~Dg~I~iwd~~~ 401 (531)
.+..... .. +.+-+.||......+.+ ++. ... +.....++.. -.|.+ +++++..+.. |+|.+.|+..
T Consensus 151 ~vy~t~e---~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~ 224 (352)
T TIGR02658 151 HIFPTAN---DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSS 224 (352)
T ss_pred EEEEecC---Cc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCC
Confidence 3333222 22 22334455555543322 221 111 1110011100 04455 7777777666 9999999644
Q ss_pred C-----eEEEEeeCC------CCCCccEEEEeCCCCEEEEEEc----------CCeEEEEEcCCcceeceeeeecCCccc
Q 009597 402 P-----VVIKYISEP------HMHSMPSISLHPNTNWLAAQSL----------DNQILIYSTRERFQLNKKKRFAGHIVA 460 (531)
Q Consensus 402 ~-----~~~~~~~~~------~~~~v~~v~~sp~~~~l~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 460 (531)
. ..+..+... ....+.-++++|+++.+++... .+.|.++|..+++.+..+.. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G---- 298 (352)
T TIGR02658 225 GDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--G---- 298 (352)
T ss_pred CcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--C----
Confidence 2 222222111 1223445999999998888532 25799999998876654432 2
Q ss_pred cceEEEEEcCCCC-EEEEEe-CCCcEEEEECCCCeEEEEe
Q 009597 461 GYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 498 (531)
Q Consensus 461 ~~v~~l~~spdg~-~l~sgs-~dg~I~iwd~~~~~~~~~~ 498 (531)
..+..++++||++ +|++.. .++.|.++|..+++.+.++
T Consensus 299 ~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 299 HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 3466799999999 887766 5788999999999999988
No 261
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=5.1e-07 Score=87.28 Aligned_cols=223 Identities=18% Similarity=0.181 Sum_probs=146.2
Q ss_pred EEEEcc-CCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEc
Q 009597 289 DISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 367 (531)
Q Consensus 289 ~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~ 367 (531)
+++|.+ ++.++++--..+.|..|+..++.... +.... +..+.+... + ..++++...+ +.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~--~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRP--D-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECT--T-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEcc--C-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 578888 67777777778999999998876543 32333 444444421 2 3455555544 4555998886544443
Q ss_pred c-----cCCCeeEEEEecCCCEEEEEeCC--------CCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEE-EEEc
Q 009597 368 Q-----HLGAVNTITFVDSNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA-AQSL 433 (531)
Q Consensus 368 ~-----h~~~I~~l~~sp~~~~l~s~s~D--------g~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~s~ 433 (531)
. .....+.+++.++|+++++.... |.|..++.. ++...... .......++|+|+++.|+ +-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeecccc
Confidence 2 34578899999999988876654 457777777 44333332 345677999999998776 5566
Q ss_pred CCeEEEEEcCCcce-eceeeee-cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEe
Q 009597 434 DNQILIYSTRERFQ-LNKKKRF-AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 511 (531)
Q Consensus 434 Dg~I~iwd~~~~~~-~~~~~~~-~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~ 511 (531)
.+.|..|++..... +.....+ ......+..-.+++..+|++.++....+.|.++|.. |+.+..+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 78899999864322 2222222 111112346779999999998888889999999977 99998888665689999995
Q ss_pred -cCCCCEEEEE
Q 009597 512 -PLEQSKVATC 521 (531)
Q Consensus 512 -p~~~~~l~t~ 521 (531)
++...+++|.
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 4334455554
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.03 E-value=1.4e-07 Score=97.36 Aligned_cols=253 Identities=11% Similarity=0.070 Sum_probs=161.5
Q ss_pred CCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCC
Q 009597 259 GGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 338 (531)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~ 338 (531)
.+..++.+..++..+|+.+..+.-.......... ++..++.++.++.|..+|..+|+.+........... .+.-
T Consensus 70 v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~---~p~v- 143 (377)
T TIGR03300 70 AADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLS---PPLV- 143 (377)
T ss_pred EECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeec---CCEE-
Confidence 3445577888888888888776654432222322 456788888899999999999999887765443221 1111
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCe-----eEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC
Q 009597 339 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 413 (531)
Q Consensus 339 ~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I-----~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 413 (531)
.+..++.++.++.|..||.++++.+..+......+ .+.... +..++.++.++.+..+|..++..+........
T Consensus 144 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 144 ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence 12457778889999999999999887775443221 111222 34677888889999999998876543321110
Q ss_pred C------CccEEEEeC--CCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEE
Q 009597 414 H------SMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 485 (531)
Q Consensus 414 ~------~v~~v~~sp--~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~ 485 (531)
. .+..+.-+| .+..+++++.+|.+..||..++..+.... .. . .... ...+..|++++.+|.|+
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~-----~-~~~p--~~~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-AS-----S-YQGP--AVDDNRLYVTDADGVVV 292 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cC-----C-ccCc--eEeCCEEEEECCCCeEE
Confidence 0 011111111 35678888899999999998876553322 11 1 1112 23467888888999999
Q ss_pred EEECCCCeEEEEeeccC-CcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 486 FWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 486 iwd~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.+|..+++.+....... ....+... .+..|++++.+|.|.+||
T Consensus 293 ~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 293 ALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred EEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEE
Confidence 99999998876653221 12222222 235788888999998875
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1.9e-07 Score=98.08 Aligned_cols=206 Identities=14% Similarity=0.142 Sum_probs=123.2
Q ss_pred eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC--CeEEEEECCCCceeEEEcccCCCeeEEEEecCCCE
Q 009597 307 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 384 (531)
Q Consensus 307 ~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~ 384 (531)
.|.++|.+.+................|++++ ..++++...+ ..|.+||+.+++... +....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG--~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDG--KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCC--CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 4667777655443333333333444555543 3444444333 469999998886543 3333445667899999998
Q ss_pred EEE-EeCCC--CEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc-CC--eEEEEEcCCcceeceeeeecCCc
Q 009597 385 FVT-SSDDK--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DN--QILIYSTRERFQLNKKKRFAGHI 458 (531)
Q Consensus 385 l~s-~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~~ 458 (531)
|+. .+.++ .|.+||+.++.... +.. +........|+|+|+.|+..+. ++ .|.++++.++... .+ .+.+
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~-lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~l-t~~~-- 330 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSR-VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RV-TFVG-- 330 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee-ecCC--
Confidence 874 44455 58888998876443 322 3445667899999998877664 33 5777787665421 11 1222
Q ss_pred cccceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEE-EEeCCCC
Q 009597 459 VAGYACQVNFSPDGRFVMSGDGE-G--KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA-TCGWDGL 526 (531)
Q Consensus 459 ~~~~v~~l~~spdg~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~-t~s~Dg~ 526 (531)
.......|+|+|++|+..+.. + .|.+||+.+++... +. +........|+| ++..++ +...+|.
T Consensus 331 --~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~sp-dg~~i~~~~~~~g~ 397 (430)
T PRK00178 331 --NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAP-NGTMLIYATRQQGR 397 (430)
T ss_pred --CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECC-CCCEEEEEEecCCc
Confidence 122347899999999877643 3 58899998876432 32 222223568999 555554 4444444
No 264
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=1e-08 Score=99.94 Aligned_cols=162 Identities=15% Similarity=0.155 Sum_probs=122.0
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCC----CcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTET----GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 361 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~ 361 (531)
.+..+..++++++||.+..+....++++.. -+++..+........+.+........+....+....+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 455566777888888887777776776643 2345555556666667776665543333334444556666655533
Q ss_pred eeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEE
Q 009597 362 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 441 (531)
Q Consensus 362 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd 441 (531)
...+-+|..-+..|+|+||+++++++..|..|+|-.+.....+..+..+|...|..+++-++ ..|++++.|++|++||
T Consensus 144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 34456799999999999999999999999999999988888888888889999999999864 4589999999999999
Q ss_pred cCCcceec
Q 009597 442 TRERFQLN 449 (531)
Q Consensus 442 ~~~~~~~~ 449 (531)
+.++..+.
T Consensus 222 ~~sgk~L~ 229 (390)
T KOG3914|consen 222 ITSGKLLD 229 (390)
T ss_pred cccCCccc
Confidence 99987763
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=7.7e-08 Score=97.47 Aligned_cols=217 Identities=11% Similarity=0.195 Sum_probs=141.4
Q ss_pred ccCceEEEEEccCC--CEEE-----EEecCCeEEEEeCCCCcEEEEccCC--CcceEEEEccCCCCCcEEEEeeC--C--
Q 009597 283 HSKAVRDISFCNDG--TKFL-----TASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMS--D-- 349 (531)
Q Consensus 283 H~~~V~~l~fspdg--~~l~-----s~s~Dg~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~--d-- 349 (531)
|...|+.+.+||.+ ..++ ..|.-+.|+||...-......+... .....+.+.+......+|+..+. |
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 67889999999963 2344 2455678999987632221111111 11122333333333344444432 2
Q ss_pred -------CeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEE--eCCCCEEEEEcCCCeEEEEeeCCCCCCccEEE
Q 009597 350 -------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 420 (531)
Q Consensus 350 -------g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~ 420 (531)
.+++++++....+...+. ..++|.++.|+++++.|+++ -.-.++.|||++.... ..+ ..++-.++-
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~df---~egpRN~~~ 318 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-FDF---PEGPRNTAF 318 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-EeC---CCCCccceE
Confidence 378888887444444443 46999999999999887765 4567899999986533 333 456778899
Q ss_pred EeCCCCEEEEEEcC---CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC------CCcEEEEECCC
Q 009597 421 LHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKS 491 (531)
Q Consensus 421 ~sp~~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~------dg~I~iwd~~~ 491 (531)
|+|.|++|+.++.+ |.|-|||+.+.+++..... ...+-+.|+|||++|++++. |+.++||++.
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt- 390 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT- 390 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-
Confidence 99999999998866 7899999998766543322 22344889999999999874 6789999964
Q ss_pred CeEEEEeeccCCcEEEEEEecC
Q 009597 492 CKVFRTLKCHEGVCIGCEWHPL 513 (531)
Q Consensus 492 ~~~~~~~~~h~~~V~~v~~~p~ 513 (531)
|+.+....... ....+.|-|.
T Consensus 391 G~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 391 GSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred CceeehhhhhH-hHhheeeeec
Confidence 55544333222 4667888773
No 266
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=1.9e-08 Score=94.72 Aligned_cols=242 Identities=19% Similarity=0.326 Sum_probs=154.9
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc-EE----EEccCCC-------------cceEEEEccCCCCCcEEEE
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-VI----RTFSTGK-------------IPYVVKLNPDDDKQNILLA 345 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-~i----~~~~~~~-------------~~~~~~~~~~~~~~~~l~s 345 (531)
...|+++.|...|.+|++|...|.|.++.-+... |. ..|+.+. ....+.+.... +.+.++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t-~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT-GRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-CcceEEE
Confidence 4579999999999999999999999999765432 21 1222221 12223333322 3356777
Q ss_pred eeCCCeEEEEECCCCce------------------------------------------eEEE-cccCCCeeEEEEecCC
Q 009597 346 GMSDKKIVQWDMNTKEI------------------------------------------TQEY-DQHLGAVNTITFVDSN 382 (531)
Q Consensus 346 g~~dg~I~iwd~~t~~~------------------------------------------~~~~-~~h~~~I~~l~~sp~~ 382 (531)
.+.|.+|++|.+....+ .+.+ ..|.-.|++|.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78899999998753310 0112 4577788999999888
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEee--CCCC-----CCccEEEEeCC-CCEEEEEEcCCeEEEEEcCCcce-eceeee
Q 009597 383 RRFVTSSDDKSLRVWEFGIPVVIKYIS--EPHM-----HSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQ-LNKKKR 453 (531)
Q Consensus 383 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~~-----~~v~~v~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~ 453 (531)
..++++. |-.|.+|.+........+. .||. .-|++..|+|. .+.+.-.+..|.|++-|++.... ....+.
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8777764 6679999987653322222 1232 34789999995 45667778899999999985321 111111
Q ss_pred ec----CC------ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeeccCC------------cE---EE
Q 009597 454 FA----GH------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEG------------VC---IG 507 (531)
Q Consensus 454 ~~----~~------~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~------------~V---~~ 507 (531)
+. +. ..-..|..+.|+++|+||++-+.- +|.|||++. ..++.++..|.. .| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 10 012347779999999999988764 899999985 456777755532 22 34
Q ss_pred EEEecCCCCEEEEEeCCCCEEe
Q 009597 508 CEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 508 v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
+.|+. +...+++|+.....-+
T Consensus 343 isfSg-d~~~v~sgsy~NNfgi 363 (460)
T COG5170 343 ISFSG-DDKHVLSGSYSNNFGI 363 (460)
T ss_pred EEecC-Ccccccccccccceee
Confidence 56666 5556777776655443
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=2e-08 Score=103.77 Aligned_cols=271 Identities=13% Similarity=0.120 Sum_probs=181.8
Q ss_pred HHHHhhhhccCCCCCCCceeeeeecccC---------------eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEE
Q 009597 247 EYAKKKEEKGNAGGEKGEHVEDKSTFHG---------------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 311 (531)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vW 311 (531)
++.|..+....+.|+.+|.+++....+. ..-.++.||+..|.-+.|+.+.+.|-|...+|.|.||
T Consensus 19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW 98 (1189)
T ss_pred EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence 4456666667777788887777653321 2336789999999999999998899999999999999
Q ss_pred eCCCCcEEEEcc-CCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeE-EEcccCCCeeEEEEecCCCEEEEEe
Q 009597 312 DTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVDSNRRFVTSS 389 (531)
Q Consensus 312 d~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~-~~~~h~~~I~~l~~sp~~~~l~s~s 389 (531)
-+-.|+...... ......+.++++..+ +..++....||.|.+=.+....+.. .++ ......+.|++|.+.++.+-
T Consensus 99 mlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 99 MLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred eeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHHHhhh
Confidence 998877554433 233344445555443 3567777888888777665433211 122 22345789999999999998
Q ss_pred CCCCEEEEEcCCCe-------E---EEEeeCCCCCCccEEEEe--------CCCCEEEEEEcCCeEEEEEcCCcceecee
Q 009597 390 DDKSLRVWEFGIPV-------V---IKYISEPHMHSMPSISLH--------PNTNWLAAQSLDNQILIYSTRERFQLNKK 451 (531)
Q Consensus 390 ~Dg~I~iwd~~~~~-------~---~~~~~~~~~~~v~~v~~s--------p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 451 (531)
..|.+.+||....- + ..-+.......|..+.|. |+...|+++...|.+.|..-.+.... .
T Consensus 176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P--v 253 (1189)
T KOG2041|consen 176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP--V 253 (1189)
T ss_pred cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC--e
Confidence 99999999975421 1 111112233446666664 46788999999999888754433211 1
Q ss_pred eeecCCccccceEEEEEcCCCCEEEEEeCCC---------cEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEe
Q 009597 452 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 452 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---------~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s 522 (531)
..-. ...+..+.|+++|.+|++++.+. .|.++. .-|+.+.+++.....|++++|-. .+-.++.+
T Consensus 254 v~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg-~gLriA~A- 326 (1189)
T KOG2041|consen 254 VVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEG-TGLRIAIA- 326 (1189)
T ss_pred EEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcC-CceEEEEE-
Confidence 1111 24466789999999999987532 456654 56788899998888999999976 44344433
Q ss_pred CCCCEEe
Q 009597 523 WDGLIKY 529 (531)
Q Consensus 523 ~Dg~I~i 529 (531)
.|+.|.+
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 4666654
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=4.1e-09 Score=109.21 Aligned_cols=241 Identities=18% Similarity=0.297 Sum_probs=168.0
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCC-CcEEEEccCCC--cceEEEEccCCCCCcEEEEeeCCCeEEEEECC--
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-- 358 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~-- 358 (531)
.+++..+..+|.|+-++.++.-| +.+-|+.. +..-+-+.+.. .+....+++.+... +-++..+...-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~-~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKP-YWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCc-eeEEecCcchhhhhhhhcC
Confidence 35678889999999999998776 45556643 33322222222 23345666666554 44444555566788874
Q ss_pred -CCceeEEEcccCCCeeEEEEecCCC-EEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCe
Q 009597 359 -TKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 436 (531)
Q Consensus 359 -t~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~ 436 (531)
+..+-..+.+|..+|+.+.|+|+.. .+++++.|-.+..||++++....+....-....+.+.|+-....+++.+..+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 3345566788999999999999664 68899999999999999987665555445667788999985555666678889
Q ss_pred EEEEEcCCcceeceeeeecCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----------------------
Q 009597 437 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSC----------------------- 492 (531)
Q Consensus 437 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~~~----------------------- 492 (531)
|.+||++.+... +..+++|.. .+..+.|.. ....+++.+.||+|.+||....
T Consensus 182 i~vwd~r~gs~p--l~s~K~~vs--~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 182 IFVWDLRKGSTP--LCSLKGHVS--SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred eEEEeccCCCcc--eEEecccce--eeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 999999876433 344555643 355566654 2345778888999999985321
Q ss_pred --------------------------------eEEEEeeccCCcEEEEEEecCCC---------CEEEEEeCCCCEEee
Q 009597 493 --------------------------------KVFRTLKCHEGVCIGCEWHPLEQ---------SKVATCGWDGLIKYW 530 (531)
Q Consensus 493 --------------------------------~~~~~~~~h~~~V~~v~~~p~~~---------~~l~t~s~Dg~I~iW 530 (531)
+++++|.+|...|....|-.... -.|+|-+.|..+|+|
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 13677888888887777755221 269999999999999
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.4e-08 Score=98.90 Aligned_cols=264 Identities=17% Similarity=0.226 Sum_probs=155.0
Q ss_pred HHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEec-----------CCeEEEEeCCCC
Q 009597 248 YAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----------DKNIKYWDTETG 316 (531)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~-----------Dg~I~vWd~~t~ 316 (531)
+.+++.+..+.+-...| |..|.-..-..++.|. |. .|.-+.|||+.++|+|-+. ...|+|||+.+|
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 34566666555433333 2334332223333333 54 5899999999999998764 257999999999
Q ss_pred cEEEEccCCCcc----eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeC--
Q 009597 317 QVIRTFSTGKIP----YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-- 390 (531)
Q Consensus 317 ~~i~~~~~~~~~----~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-- 390 (531)
...+.|...... ....|+.++. +++......|.||+..+..++..-......|....|+|.++.|+--+.
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdK----y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDK----YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred chhcceeccCCCccccceEEeccCCc----eeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 999988763322 3445555432 455555578889887654333222222344555556555544432110
Q ss_pred --------------CC-----------------------------------------CEEEEEcCCCeEEEEeeCCCCCC
Q 009597 391 --------------DK-----------------------------------------SLRVWEFGIPVVIKYISEPHMHS 415 (531)
Q Consensus 391 --------------Dg-----------------------------------------~I~iwd~~~~~~~~~~~~~~~~~ 415 (531)
-. .+.|+.++........ ......
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-velke~ 447 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-VELKES 447 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-eecchh
Confidence 00 0111111111000000 013445
Q ss_pred ccEEEEeCCCCEEEEEEcC---CeEEEEEcCC-cceeceeeeecCCccccceEEEEEcCCCCEEEEEe---CCCcEEEEE
Q 009597 416 MPSISLHPNTNWLAAQSLD---NQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWD 488 (531)
Q Consensus 416 v~~v~~sp~~~~l~s~s~D---g~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs---~dg~I~iwd 488 (531)
|...+|-|.|+.+++-+.. .++.+|.+.+ ......++.+.. ...+.+.|+|.|++++.+. ..|.+.++|
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 7788999999988876643 5788998873 333333333332 3366699999999998764 578999999
Q ss_pred CCCCeEEEEee-ccCCcEEEEEEecCCCCEEEEEeCCC
Q 009597 489 WKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDG 525 (531)
Q Consensus 489 ~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~l~t~s~Dg 525 (531)
..-..+..+-. .|. ..+.+.|.| .+++++|++.-.
T Consensus 524 ~~~a~~k~~~~~eh~-~at~veWDP-tGRYvvT~ss~w 559 (698)
T KOG2314|consen 524 TDYADLKDTASPEHF-AATEVEWDP-TGRYVVTSSSSW 559 (698)
T ss_pred cchhhhhhccCcccc-ccccceECC-CCCEEEEeeehh
Confidence 87433222222 243 357899999 889999998744
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=9.2e-09 Score=103.36 Aligned_cols=273 Identities=17% Similarity=0.205 Sum_probs=179.9
Q ss_pred HHHHHHHhhhhccCCCCCCCceeeeeeccc-------CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 009597 244 YAEEYAKKKEEKGNAGGEKGEHVEDKSTFH-------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 316 (531)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 316 (531)
.++.+..-..++...+++++.+++.|+... ..|..+|..|+.+|.++-|-.+-++++++ ||-|.+||.--+
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFig 814 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIG 814 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccccc
Confidence 344555555556667788999999998653 35889999999999999999998877776 688999998777
Q ss_pred cEEEEcc---CCCcceEEEEccCCCCCcEEEEe-eCCCeEEEEECCCCceeEEEcc-----cCCCeeEEEEecCCCEEEE
Q 009597 317 QVIRTFS---TGKIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQ-----HLGAVNTITFVDSNRRFVT 387 (531)
Q Consensus 317 ~~i~~~~---~~~~~~~~~~~~~~~~~~~l~sg-~~dg~I~iwd~~t~~~~~~~~~-----h~~~I~~l~~sp~~~~l~s 387 (531)
..+.... .+.....+...+.-+. .++++| +...+|+++|.+..+.+.+++. ..+-+.+++..+.|+.++.
T Consensus 815 r~Laq~~dapk~~a~~~ikcl~nv~~-~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa 893 (1034)
T KOG4190|consen 815 RLLAQMEDAPKEGAGGNIKCLENVDR-HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA 893 (1034)
T ss_pred chhHhhhcCcccCCCceeEecccCcc-hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH
Confidence 7665332 1222334444443233 455555 7789999999999988777754 3456889999999999999
Q ss_pred EeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEE-EEcCCcceeceeeeecCCccccceEEE
Q 009597 388 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI-YSTRERFQLNKKKRFAGHIVAGYACQV 466 (531)
Q Consensus 388 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~i-wd~~~~~~~~~~~~~~~~~~~~~v~~l 466 (531)
+-..|.|.+.|.+++..+..... .......++ .|..+.|+....|.++.+ |..-++......+..... ....
T Consensus 894 ~LSnGci~~LDaR~G~vINswrp-mecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppep--ahfl--- 966 (1034)
T KOG4190|consen 894 ALSNGCIAILDARNGKVINSWRP-MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP--AHFL--- 966 (1034)
T ss_pred HhcCCcEEEEecCCCceeccCCc-ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc--hhhh---
Confidence 99999999999999988765532 222222332 356677888888888888 876665333222211111 0001
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC-C---CeEEEEee--ccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 467 NFSPDGRFVMSGDGEGKCWFWDWK-S---CKVFRTLK--CHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 467 ~~spdg~~l~sgs~dg~I~iwd~~-~---~~~~~~~~--~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
-.-|.-|++......+.+|--. . ...+..+. ...+..++++-.|.+. -++.|...|.|.+
T Consensus 967 --qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~-afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 967 --QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNC-AFLAGNEHGAIAL 1032 (1034)
T ss_pred --hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccc-hhhccCCCCceee
Confidence 1124456666555566666311 1 11122222 2356778888888544 4556777888875
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=4.9e-07 Score=95.17 Aligned_cols=207 Identities=15% Similarity=0.143 Sum_probs=119.6
Q ss_pred eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCC--eEEEEECCCCceeEEEcccCCCeeEEEEecCCCE
Q 009597 307 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 384 (531)
Q Consensus 307 ~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~ 384 (531)
.|.++|....................|++++ ..++++...++ .|.+||+.+++.... ....+......|+|+|+.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG--~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDG--RKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCC--CEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCE
Confidence 4555665444332222223333445566543 23444443333 688999988765332 222334457899999998
Q ss_pred EEE-EeCCCC--EEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc-CC--eEEEEEcCCcceeceeeeecCCc
Q 009597 385 FVT-SSDDKS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DN--QILIYSTRERFQLNKKKRFAGHI 458 (531)
Q Consensus 385 l~s-~s~Dg~--I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~~ 458 (531)
|+. .+.++. |.++|+.++.... +.. +.......+|+|++++|+..+. ++ .|.++|+.++... .+ .+.+.
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~-lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~L-t~~g~- 350 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTR-ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RL-TFEGE- 350 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEE-Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EE-ecCCC-
Confidence 765 456665 7777887775433 322 3445678899999998877664 33 5666777665322 11 12222
Q ss_pred cccceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCC
Q 009597 459 VAGYACQVNFSPDGRFVMSGDG-EG--KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 526 (531)
Q Consensus 459 ~~~~v~~l~~spdg~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~ 526 (531)
.....+|+|||++|+..+. ++ .|.++|+.+++... +... .......|+|++..++++...+|.
T Consensus 351 ---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~ 416 (448)
T PRK04792 351 ---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGK 416 (448)
T ss_pred ---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCc
Confidence 1233689999999887654 33 46667888776432 3222 122345799954444555555554
No 272
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=9.1e-07 Score=84.77 Aligned_cols=221 Identities=16% Similarity=0.122 Sum_probs=143.6
Q ss_pred CceeeeeecccCeeeEEecCccCceEEEE--EccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCC
Q 009597 263 GEHVEDKSTFHGKCMRTYMGHSKAVRDIS--FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 340 (531)
Q Consensus 263 ~~~i~~~~~~~~~~~~~l~gH~~~V~~l~--fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~ 340 (531)
++.|..++..+|+.+..+.- ...+.... ..+++.++++++.++.|..||..+|+.+..+............. .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD----G 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE----T
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec----c
Confidence 46778888888998888753 11122222 22355678888899999999999999998887644322221111 2
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEE-cccC---CCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCC-
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEY-DQHL---GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS- 415 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~-~~h~---~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~- 415 (531)
..+++++.++.|+.+|..+++.+... .... .....+.....+..++.+..++.|..+|.+++..+..........
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 45777778889999999999998884 3321 112223333348889999989999999999998877765422111
Q ss_pred --------ccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 009597 416 --------MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 487 (531)
Q Consensus 416 --------v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iw 487 (531)
+..-....++ .++.++.++.+..+|+.++..+. .....+ +. .....++..|++++.++.|.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~------~~-~~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISG------IY-SLPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-------EC-ECEECCCTEEEEEETTTEEEEE
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCC------cc-CCceeeCCEEEEEeCCCEEEEE
Confidence 1111122234 77777777754444999886542 111111 11 1145678888888899999999
Q ss_pred ECCCCeEEEE
Q 009597 488 DWKSCKVFRT 497 (531)
Q Consensus 488 d~~~~~~~~~ 497 (531)
|+++++.+..
T Consensus 228 d~~tG~~~W~ 237 (238)
T PF13360_consen 228 DLKTGKVVWQ 237 (238)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCCEEeE
Confidence 9999997653
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=1.2e-07 Score=88.92 Aligned_cols=205 Identities=12% Similarity=0.057 Sum_probs=136.6
Q ss_pred CCeEEEEeCCCCcEEE--Ecc--CCCcceEEEEccCCCCCc-EEEEeeCCCeEEEEECCCCceeEEEcccC------CCe
Q 009597 305 DKNIKYWDTETGQVIR--TFS--TGKIPYVVKLNPDDDKQN-ILLAGMSDKKIVQWDMNTKEITQEYDQHL------GAV 373 (531)
Q Consensus 305 Dg~I~vWd~~t~~~i~--~~~--~~~~~~~~~~~~~~~~~~-~l~sg~~dg~I~iwd~~t~~~~~~~~~h~------~~I 373 (531)
.|.+.++++...+.+. ++. .......+.|..-...+. .++-+...|.|.++..........+.+-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678888887665443 111 122233444443333333 56777888999999775444333333211 124
Q ss_pred eEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEE-EeeCCCCCCccEEEEeC-CCCEEEEEEcCCeEEEEEcCCcceecee
Q 009597 374 NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK-YISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKK 451 (531)
Q Consensus 374 ~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~v~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 451 (531)
.++.|++.+..++++..+|.+.+-+.......+ ..-.+|...+..+.|+. +.+++.+|+.|+.+..||+|.... ...
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-eee
Confidence 578899999999999999999966655544333 12245888888888886 567899999999999999993321 111
Q ss_pred eeecCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCeEEEEeeccCCcEEEEEEecC
Q 009597 452 KRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWK-SCKVFRTLKCHEGVCIGCEWHPL 513 (531)
Q Consensus 452 ~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~V~~v~~~p~ 513 (531)
....-| ...|++|.-+| .+.+|++|+.|-.|++||.+ -++++..-. -.+.|..+.++|.
T Consensus 204 ~n~kvH--~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 204 HNSKVH--TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPE 264 (339)
T ss_pred ecceee--ecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecch
Confidence 112223 34488787776 58899999999999999999 466665444 3477999999984
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.89 E-value=1.4e-06 Score=100.40 Aligned_cols=205 Identities=11% Similarity=0.162 Sum_probs=135.5
Q ss_pred ceEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcEEEEccC------------------CCcceEEEEccCCCCCcEEEEe
Q 009597 286 AVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFST------------------GKIPYVVKLNPDDDKQNILLAG 346 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~i~~~~~------------------~~~~~~~~~~~~~~~~~~l~sg 346 (531)
....|+++++++.|+.+. ..+.|+++|+.++.. .++.. -..+..+.+.+. ++.++++.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~--~g~LyVad 701 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV--NEKVYIAM 701 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC--CCeEEEEE
Confidence 358899998887665554 457899999877653 33211 112344555543 44678888
Q ss_pred eCCCeEEEEECCCCceeEEEcc---------------cCCCeeEEEEecCCC-EEEEEeCCCCEEEEEcCCCeEEEEeeC
Q 009597 347 MSDKKIVQWDMNTKEITQEYDQ---------------HLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISE 410 (531)
Q Consensus 347 ~~dg~I~iwd~~t~~~~~~~~~---------------h~~~I~~l~~sp~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 410 (531)
..++.|++||..++... .+.+ .....+.|+++|+++ .+++-+.++.|++||+.++........
T Consensus 702 ~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred CCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 88999999999876543 2211 112356799999988 455666678999999987643211100
Q ss_pred --------------------CCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeee-cCC-------ccccc
Q 009597 411 --------------------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGH-------IVAGY 462 (531)
Q Consensus 411 --------------------~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~~~-------~~~~~ 462 (531)
........++++++|+++++-+.++.|++||..++........- .+. ..-..
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 00112458899999999999899999999999775433211100 000 00123
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 009597 463 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 494 (531)
Q Consensus 463 v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~ 494 (531)
...++++++|+++++-+.++.|++||+.+++.
T Consensus 861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 861 PAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 56799999999988888999999999988764
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.89 E-value=1e-06 Score=88.53 Aligned_cols=251 Identities=12% Similarity=0.143 Sum_probs=166.0
Q ss_pred eeeeeecccCeeeEEecCccCc--eE-EEEEccCCCEEEEEecCCeEEEEeCCCCcE-EEEccCCCcceE--EEEccCCC
Q 009597 265 HVEDKSTFHGKCMRTYMGHSKA--VR-DISFCNDGTKFLTASYDKNIKYWDTETGQV-IRTFSTGKIPYV--VKLNPDDD 338 (531)
Q Consensus 265 ~i~~~~~~~~~~~~~l~gH~~~--V~-~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~-i~~~~~~~~~~~--~~~~~~~~ 338 (531)
.+.+|+...|..+..|.+-..+ .. -+.|+-+.+++|-.. ...++|+++ ++.. ...+..-....+ ..+++..+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCC
Confidence 7899999999999999998877 66 688998888776543 347999997 3322 222222222333 33444332
Q ss_pred CCcEEEE-----eeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEe-----------CCCCEEEEEcCCC
Q 009597 339 KQNILLA-----GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-----------DDKSLRVWEFGIP 402 (531)
Q Consensus 339 ~~~~l~s-----g~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-----------~Dg~I~iwd~~~~ 402 (531)
+ ..|+. +...+.+++|.+..+..+.+-....-.=..+.|.+.|++|++-- ....+.|+++...
T Consensus 187 ~-~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 187 H-DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred C-ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 2 22332 45678999999987776665544444445788999888765421 1245778887743
Q ss_pred eEEEEeeCCCCCCccEEEEeCCCCEEEEEE--cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC
Q 009597 403 VVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 480 (531)
Q Consensus 403 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 480 (531)
...... ...++|..++|.|.++.|++.+ ++..+.++|++..... ....+. -+.+.|+|.+++++.++-
T Consensus 266 ~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~---~~Pe~~-----rNT~~fsp~~r~il~agF 335 (561)
T COG5354 266 SIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRF---YFPEQK-----RNTIFFSPHERYILFAGF 335 (561)
T ss_pred ccceec--cccccceeeeecccCCceeEEecccccceeecccccceEE---ecCCcc-----cccccccCcccEEEEecC
Confidence 322222 3578999999999888777655 7889999999876211 111211 233789999999998764
Q ss_pred ---CCcEEEEECCCCeEE-EEeeccCCcEEEEEEecCCCCEEEEEeC------CCCEEeeC
Q 009597 481 ---EGKCWFWDWKSCKVF-RTLKCHEGVCIGCEWHPLEQSKVATCGW------DGLIKYWD 531 (531)
Q Consensus 481 ---dg~I~iwd~~~~~~~-~~~~~h~~~V~~v~~~p~~~~~l~t~s~------Dg~I~iWD 531 (531)
.|.|-|||......+ ..+.+.. ..-|.|+| ++.++.+... |..|+|||
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred CccccceEEeccCCceEEEEEeecCC--ceEeeccC-CceEEEecCCCcccccCcceEEEE
Confidence 478999998765443 3565443 45688999 6776665432 78899996
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=6.9e-06 Score=79.74 Aligned_cols=249 Identities=11% Similarity=0.184 Sum_probs=158.6
Q ss_pred EecCccCceEEEEEccCCCEEEEEecC---CeEEEEeCCC--CcEE--EEc-cCCCcceEEEEccCCCCCcEEEEeeCCC
Q 009597 279 TYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTET--GQVI--RTF-STGKIPYVVKLNPDDDKQNILLAGMSDK 350 (531)
Q Consensus 279 ~l~gH~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t--~~~i--~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg 350 (531)
.+-.+.+.++-|+|+|++++|.++-.+ |.|-.|.++. |... ... ..+..+.-+++.. ++..++.+-...|
T Consensus 34 ~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g 111 (346)
T COG2706 34 QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSG 111 (346)
T ss_pred hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCc
Confidence 344577889999999999999988654 7787777764 4432 222 2333333344433 4434555556678
Q ss_pred eEEEEECCC-Ccee--EEEcccCCC----------eeEEEEecCCCEEEEEeC-CCCEEEEEcCCCeEEEEe--eCCCCC
Q 009597 351 KIVQWDMNT-KEIT--QEYDQHLGA----------VNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYI--SEPHMH 414 (531)
Q Consensus 351 ~I~iwd~~t-~~~~--~~~~~h~~~----------I~~l~~sp~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~--~~~~~~ 414 (531)
.|.++-++. |.+. .....|.+. +.+..+.|++++|+++.- --.|.+|++..+.....- ......
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 999999865 3321 122335555 888999999999988753 225999999876443221 113455
Q ss_pred CccEEEEeCCCCEEEEEE-cCCeEEEEEcCCc-ceeceeeee---c-CCccccceEEEEEcCCCCEEEEEeC-CCcEEEE
Q 009597 415 SMPSISLHPNTNWLAAQS-LDNQILIYSTRER-FQLNKKKRF---A-GHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFW 487 (531)
Q Consensus 415 ~v~~v~~sp~~~~l~s~s-~Dg~I~iwd~~~~-~~~~~~~~~---~-~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~iw 487 (531)
.-..|.|||++++..+.+ .+++|.+|..... ..+..++.. + ......+...|.+++||++|.++.. ...|.+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 678999999999887655 5789999998763 222222221 1 1111234566899999999998863 3467777
Q ss_pred ECC--CCeE--EEEeeccCCcEEEEEEecCCCCEEEEEeCCC-CEEee
Q 009597 488 DWK--SCKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWDG-LIKYW 530 (531)
Q Consensus 488 d~~--~~~~--~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg-~I~iW 530 (531)
.+. ++++ +.....+...-....++| ++++|+.++.++ .|.+|
T Consensus 272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 272 SVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVF 318 (346)
T ss_pred EEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEE
Confidence 665 3332 222233444467899999 777777777644 45554
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=2e-06 Score=89.52 Aligned_cols=211 Identities=17% Similarity=0.157 Sum_probs=129.2
Q ss_pred eeeeeecccCeeeEEecCccCceEEEEEccCCCE-EEEEecC---CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCC
Q 009597 265 HVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTK-FLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 340 (531)
Q Consensus 265 ~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~-l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~ 340 (531)
.+++.+.. |...+.+.... .+..-.|+|||+. ++..+.+ ..|.++|+.+++...............|++++ .
T Consensus 170 ~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG--~ 245 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDG--S 245 (419)
T ss_pred eEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCC--C
Confidence 34444432 33333333333 7889999999985 5544443 46999999988766554433333445566543 3
Q ss_pred cEEEEeeCC--CeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCC-C--CEEEEEcCCCeEEEEeeCCCCCC
Q 009597 341 NILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMHS 415 (531)
Q Consensus 341 ~~l~sg~~d--g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~ 415 (531)
.++++.+.+ ..|.++|+.+++.. .+..+........|+|+|+.|+..+.. + .|.+.|+.++...+....+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---
Confidence 555555444 57888898877644 344344434456899999988776643 3 57778888776544332211
Q ss_pred ccEEEEeCCCCEEEEEEcC---------CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC---c
Q 009597 416 MPSISLHPNTNWLAAQSLD---------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---K 483 (531)
Q Consensus 416 v~~v~~sp~~~~l~s~s~D---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---~ 483 (531)
....|+|+|++|+..+.. ..|.+.|+.++... . +.... ......|+|||+.|+.....+ .
T Consensus 322 -~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~---LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 322 -NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-R---LTANG---VNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred -cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-E---CCCCC---CcCCeEECCCCCEEEEEEccCCcEE
Confidence 124899999999877654 36888888766422 1 21111 122378999999887665332 3
Q ss_pred EEEEECCC
Q 009597 484 CWFWDWKS 491 (531)
Q Consensus 484 I~iwd~~~ 491 (531)
|.+.++..
T Consensus 394 L~~~~l~g 401 (419)
T PRK04043 394 LGIIRLNY 401 (419)
T ss_pred EEEEecCC
Confidence 66667654
No 278
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=9.3e-09 Score=98.19 Aligned_cols=165 Identities=12% Similarity=0.160 Sum_probs=131.3
Q ss_pred EEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC-----eEEEEeeCCCCCCccE
Q 009597 344 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPS 418 (531)
Q Consensus 344 ~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~-----~~~~~~~~~~~~~v~~ 418 (531)
++.+.+-.|.+-|+.++-. +.|. ..+.|.++.|...++++..|+..|.|..+|++.. .+...+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhh
Confidence 5555677788888887642 2333 5678999999998999999999999999999864 3334443 8889999
Q ss_pred EEEeC-CCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 009597 419 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 497 (531)
Q Consensus 419 v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~ 497 (531)
+..-. ++.+|++.+++|+|.+||++.-++-..+..+.||.+.....-+-..+....|++++.|...|||.++.+.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 88776 78999999999999999999876655678899998776655566778888999999999999999999999998
Q ss_pred eeccC----CcEEEEEEec
Q 009597 498 LKCHE----GVCIGCEWHP 512 (531)
Q Consensus 498 ~~~h~----~~V~~v~~~p 512 (531)
++... ..|.+++|..
T Consensus 384 ipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cCCCCccccccccceehhc
Confidence 87433 2455666654
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.85 E-value=3.2e-08 Score=111.44 Aligned_cols=178 Identities=13% Similarity=0.197 Sum_probs=133.4
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEE
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 420 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~ 420 (531)
+.+.....++...-|..+.+.. .+..+-..|.++.-+|...+.+||+.||.|++|....+..+..........|+.+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred ccCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence 3344444455555555443322 23445677889999999999999999999999999999888777665668999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe---CCCcEEEEECCC-C--eE
Q 009597 421 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWDWKS-C--KV 494 (531)
Q Consensus 421 ~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs---~dg~I~iwd~~~-~--~~ 494 (531)
|+.+|+.+..+..||.+.+|.+.. ........|. .....+.|-. ..+++.+ .++.+.+||..- + .+
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~p----k~~~s~qchn--k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQASP----KPYTSWQCHN--KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred hcccCCceeeeccCCceeecccCC----cceeccccCC--ccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence 999999999999999999999872 2223334443 2244555653 5566654 578899999642 2 23
Q ss_pred EEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 495 FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 495 ~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+. .+|.+.++++++.| ...+|++||.+|.|++||
T Consensus 2331 v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2331 VH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred ee--eecCCCceEEEEcC-cceEEEecCCcCcEEEee
Confidence 33 78999999999999 888999999999999998
No 280
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.84 E-value=4.8e-06 Score=80.81 Aligned_cols=231 Identities=12% Similarity=0.137 Sum_probs=154.2
Q ss_pred eEEEEEcc-CCCEEEEEecCC-eEEEEeCCCCcEEEEccCCCcce---EEEEccCCCCCcEEEEe-----eCCCeEEEEE
Q 009597 287 VRDISFCN-DGTKFLTASYDK-NIKYWDTETGQVIRTFSTGKIPY---VVKLNPDDDKQNILLAG-----MSDKKIVQWD 356 (531)
Q Consensus 287 V~~l~fsp-dg~~l~s~s~Dg-~I~vWd~~t~~~i~~~~~~~~~~---~~~~~~~~~~~~~l~sg-----~~dg~I~iwd 356 (531)
...++.+| .+..++.+-.-| ...+||..+++....+.....-. --.|++ ++.+|++. ...|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~---dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP---DGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC---CCCEEEEeccccCCCcEEEEEEE
Confidence 45678888 455566666655 47899999999988876543332 233444 33566665 3458999999
Q ss_pred CC-CCceeEEEcccCCCeeEEEEecCCCEEEEEe------------------CCCCEEEEEcCCCeEEEEee---CCCCC
Q 009597 357 MN-TKEITQEYDQHLGAVNTITFVDSNRRFVTSS------------------DDKSLRVWEFGIPVVIKYIS---EPHMH 414 (531)
Q Consensus 357 ~~-t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s------------------~Dg~I~iwd~~~~~~~~~~~---~~~~~ 414 (531)
.. +-+.+.++..|.-.-..|.+.|+++.|+++- .+-++.+.|..++..+.... ..|..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 98 6778889988877778899999998877753 13456667778887766643 23667
Q ss_pred CccEEEEeCCCCEEEEEEcCC-------eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe-CCCcEEE
Q 009597 415 SMPSISLHPNTNWLAAQSLDN-------QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWF 486 (531)
Q Consensus 415 ~v~~v~~sp~~~~l~s~s~Dg-------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~i 486 (531)
+|..+++.++|..++..-..| -|-+++............-......+|+-+|++++++.++++.+ ..+.+.+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 899999999988776655443 24444433321111111111123357889999999999887666 6678999
Q ss_pred EECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCC
Q 009597 487 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 524 (531)
Q Consensus 487 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~D 524 (531)
||..+++.+....... +..++..+ + .+++|.+.-
T Consensus 244 ~d~~tg~~~~~~~l~D--~cGva~~~-~-~f~~ssG~G 277 (305)
T PF07433_consen 244 WDAATGRLLGSVPLPD--ACGVAPTD-D-GFLVSSGQG 277 (305)
T ss_pred EECCCCCEeeccccCc--eeeeeecC-C-ceEEeCCCc
Confidence 9999999988776443 34555554 3 366666543
No 281
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=8.4e-09 Score=102.52 Aligned_cols=168 Identities=19% Similarity=0.273 Sum_probs=135.0
Q ss_pred eeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC--CCCEEEEEEcCCeEEE
Q 009597 362 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP--NTNWLAAQSLDNQILI 439 (531)
Q Consensus 362 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~s~s~Dg~I~i 439 (531)
+...+..|.+.|+.|.|+..|..|++||+|..|.+||+........+..+|...|....|-| +...+++++.||++++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 34567889999999999999999999999999999999999888888888999999888988 4567999999999999
Q ss_pred EEcCCcceeceeeeecCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEe---eccCC---cEEEEEEec
Q 009597 440 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCKVFRTL---KCHEG---VCIGCEWHP 512 (531)
Q Consensus 440 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~iwd~~~~~~~~~~---~~h~~---~V~~v~~~p 512 (531)
=.+.....+...+.+..| .+.+..++.-|+.. -|.+++.|+.+.-+|++...+...+ ..+.. ....++.+|
T Consensus 214 s~i~~t~~~e~t~rl~~h--~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPH--EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeccccceecceecccc--cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 877654444434444445 34566688888654 4779999999999999876543333 33444 567889999
Q ss_pred CCCCEEEEEeCCCCEEeeC
Q 009597 513 LEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 513 ~~~~~l~t~s~Dg~I~iWD 531 (531)
.+...+++++.|-.+++||
T Consensus 292 ~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred CCccccccCChhhhhhhhc
Confidence 8888999999999999886
No 282
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.4e-07 Score=92.10 Aligned_cols=259 Identities=20% Similarity=0.204 Sum_probs=155.9
Q ss_pred eeeeecccCeeeEEecCccCceEEEEEccCCC-EEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEE
Q 009597 266 VEDKSTFHGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL 344 (531)
Q Consensus 266 i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 344 (531)
+...+..+.+...-+.+|...|++|+|+|..+ ++..++.+..|+|.|+++..++..+..+..++.++|..+. .+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde--~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE--RHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC--cceeE
Confidence 45555555566667788999999999999765 7889999999999999999999999999888998888866 48999
Q ss_pred EeeCCCeEEEEECCCCc-eeEEEcc--cCCCeeEEEEe------cCCCEEEEEeCCCCEEEEEcCCC--eEEEEeeCCCC
Q 009597 345 AGMSDKKIVQWDMNTKE-ITQEYDQ--HLGAVNTITFV------DSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHM 413 (531)
Q Consensus 345 sg~~dg~I~iwd~~t~~-~~~~~~~--h~~~I~~l~~s------p~~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~~ 413 (531)
+|...|.|.|||++..+ .+.++.+ ...+|..|+.. +.+.+++..+.+ +..|++.-. ...........
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~p 330 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPP 330 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCC
Confidence 99999999999998654 2233322 22344444433 334444444443 556665322 11111212223
Q ss_pred CCccEEEEeCCCCEEEEEEcCC-------eEEE-EEcCCcceeceeeeec-CCcc-ccceEE-EEEcCCCCEEE-EEeCC
Q 009597 414 HSMPSISLHPNTNWLAAQSLDN-------QILI-YSTRERFQLNKKKRFA-GHIV-AGYACQ-VNFSPDGRFVM-SGDGE 481 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~Dg-------~I~i-wd~~~~~~~~~~~~~~-~~~~-~~~v~~-l~~spdg~~l~-sgs~d 481 (531)
+...++.+++..+.++.....+ .|.. -|.+++..+...+... |... .-.-.. +.-.++.++|+ .|+..
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 4455556666444444433321 1111 1222333332221111 1110 000001 11234555555 45566
Q ss_pred CcEEEEECCCCeEEEEeeccCCcEEEEEEecC-CCCEEEEEeCCCCEEee
Q 009597 482 GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL-EQSKVATCGWDGLIKYW 530 (531)
Q Consensus 482 g~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~l~t~s~Dg~I~iW 530 (531)
+.+.+||..+++.+.++... .+|..++.... ++.+|++-. |..++|+
T Consensus 411 n~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred ceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEE
Confidence 78999999999999998754 67877766543 445666654 5556654
No 283
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.79 E-value=3.6e-06 Score=87.32 Aligned_cols=253 Identities=9% Similarity=0.066 Sum_probs=157.2
Q ss_pred CCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEE--EccCCC
Q 009597 261 EKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK--LNPDDD 338 (531)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~--~~~~~~ 338 (531)
..++.+...+..+|+.+..+........+... .+..++.+..++.|..+|..+|+.+..+.......... ..|.-.
T Consensus 127 ~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 127 SEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA 204 (394)
T ss_pred cCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence 44567777887888888776644321111112 23457777889999999999999998876542211000 011111
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEcccCC-------CeeEEEEec--CCCEEEEEeCCCCEEEEEcCCCeEEEEee
Q 009597 339 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-------AVNTITFVD--SNRRFVTSSDDKSLRVWEFGIPVVIKYIS 409 (531)
Q Consensus 339 ~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~-------~I~~l~~sp--~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 409 (531)
...++.++.+|.+..+|..+++.+..+..... ....+..+| .+..++.++.+|.+..+|..+++.+-...
T Consensus 205 -~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~ 283 (394)
T PRK11138 205 -FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE 283 (394)
T ss_pred -CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec
Confidence 13577788899999999999987665432110 011111122 34567777889999999999987665433
Q ss_pred CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009597 410 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 489 (531)
Q Consensus 410 ~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 489 (531)
.. ....+. ..+..|++++.+|.|..+|..++..+.......+..... ..+ .+.+|+.++.+|.|++.|.
T Consensus 284 ~~---~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~s----p~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 284 YG---SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTA----PVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred CC---CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccC----CEE--ECCEEEEEeCCCEEEEEEC
Confidence 21 111222 246678888899999999998886553322221111111 111 2567888999999999999
Q ss_pred CCCeEEEEeeccCCcEE-EEEEecCCCCEEEEEeCCCCEEee
Q 009597 490 KSCKVFRTLKCHEGVCI-GCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 490 ~~~~~~~~~~~h~~~V~-~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.+|+.+...+.....+. ...+. + ..|+.++.||.|..+
T Consensus 353 ~tG~~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 353 EDGRFVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAI 391 (394)
T ss_pred CCCCEEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEE
Confidence 99999888765433333 22332 3 468888999998765
No 284
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.79 E-value=4.5e-06 Score=79.94 Aligned_cols=215 Identities=16% Similarity=0.125 Sum_probs=135.4
Q ss_pred CCeEEEEeCCCCcEEEEccCCC--cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCC
Q 009597 305 DKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 382 (531)
Q Consensus 305 Dg~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~ 382 (531)
+|+|..||..+|+.+....... .......... +..+++++.++.|..||..+|+.+..+.. .+.+.... ...+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPD---GGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEE---TTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEe---CCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecc
Confidence 6899999999999998886633 1222112211 24577778999999999999999888875 33322222 2245
Q ss_pred CEEEEEeCCCCEEEEEcCCCeEEEEe-eCCC--CCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCcc
Q 009597 383 RRFVTSSDDKSLRVWEFGIPVVIKYI-SEPH--MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 459 (531)
Q Consensus 383 ~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~~~--~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 459 (531)
..+++++.++.|+.+|..++..+... .... ............+..++++..++.|..+|+.++..+..... .....
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~ 155 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRG 155 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-S
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCC
Confidence 56677778889999999999887774 3211 11112222233488899999999999999999877654433 21110
Q ss_pred cc-------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 460 AG-------YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 460 ~~-------~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.. ....+.+. ++ .++.++.++.+..+|+.+++.+.... ...+..+ ... .+..|+.++.++.|..||
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~-~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSV-DGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EEC-CCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-cee-eCCEEEEEeCCCEEEEEE
Confidence 01 11223333 44 77777777764444999999765333 2223332 234 455677777899999886
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.78 E-value=3.3e-08 Score=91.16 Aligned_cols=185 Identities=17% Similarity=0.236 Sum_probs=114.3
Q ss_pred cEEEEeeCCCeEEEEECCCCce------------eEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEE-EE
Q 009597 341 NILLAGMSDKKIVQWDMNTKEI------------TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI-KY 407 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~------------~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~-~~ 407 (531)
..|+++..++.+..+...++.+ ...+..|.++-.+-..+--++.++++..||.+.+++.+.-... ..
T Consensus 48 ~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~ 127 (319)
T KOG4714|consen 48 YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSR 127 (319)
T ss_pred heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhh
Confidence 4577777776666555433322 2233334443333333445678999999999999998763211 11
Q ss_pred eeCCCCCCccEEEEeCCCCEEEEEE-----cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEEEeCC
Q 009597 408 ISEPHMHSMPSISLHPNTNWLAAQS-----LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGE 481 (531)
Q Consensus 408 ~~~~~~~~v~~v~~sp~~~~l~s~s-----~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~d 481 (531)
+...|.... +.++...++.+.++. .-+..+.|+++....+. ..+.....+.+++-+|. ...+++|+.|
T Consensus 128 i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~-----~~~~~~~~v~~l~~hp~qq~~v~cgt~d 201 (319)
T KOG4714|consen 128 IPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI-----PSKKALDAVTALCSHPAQQHLVCCGTDD 201 (319)
T ss_pred ccccccccc-ccceeecccEEecCCcceEeeccceeeeccccccccc-----ccccccccchhhhCCcccccEEEEecCC
Confidence 221122221 222233455444432 22345556655432221 11111222777888885 4566788899
Q ss_pred CcEEEEECCCCeE-EEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 482 GKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 482 g~I~iwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|.+-+||++.... ...+++|...|..+-|||.++..|++|+.||.+..||
T Consensus 202 g~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 202 GIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred CeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 9999999998754 4456799999999999999999999999999999997
No 286
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=1.1e-07 Score=101.03 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=138.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCee
Q 009597 295 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 374 (531)
Q Consensus 295 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~ 374 (531)
++..++.|+....+..+|+.+.+..+........ +..+.. ++..+++|...|+|.+-|.++.+.+.++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEe---cCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 3456788888888999999988887776554433 333333 236899999999999999999999999999999998
Q ss_pred EEEEecCCCEEEEEeC---------CCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCC-CCEEEEEEcCCeEEEEEcCC
Q 009597 375 TITFVDSNRRFVTSSD---------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRE 444 (531)
Q Consensus 375 ~l~~sp~~~~l~s~s~---------Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~s~Dg~I~iwd~~~ 444 (531)
.+.. .|+.|++|+. |..|+|||++..+.+.-+.- .....-+.|+|. ...+++++..|+..+.|..+
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~--~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF--PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc--ccCchhhhhcccccceEEEEecccceeeccccc
Confidence 8777 5889999885 66789999998766544432 222255678884 56788889999999998432
Q ss_pred cceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009597 445 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 488 (531)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd 488 (531)
-.. .....+.-+.....+..+++|++|+.|+.|..+|.|.+|-
T Consensus 298 lsN-P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSN-PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCC-CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 111 1112222344455688899999999999999999999997
No 287
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.77 E-value=2.4e-08 Score=66.58 Aligned_cols=39 Identities=41% Similarity=0.867 Sum_probs=37.4
Q ss_pred CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEe
Q 009597 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 312 (531)
Q Consensus 274 ~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 312 (531)
+++++++.+|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 478999999999999999999999999999999999997
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.76 E-value=1.1e-07 Score=92.76 Aligned_cols=155 Identities=15% Similarity=0.206 Sum_probs=107.4
Q ss_pred CeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeE-EEEee-CCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceec
Q 009597 372 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV-IKYIS-EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449 (531)
Q Consensus 372 ~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~-~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 449 (531)
.+..+..++.+++++++..++...+++++.... .+.+. ..-...-+++.+..+.....++..-|-++-+|+-+-.. .
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-G 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-c
Confidence 445567788889999998888887888765432 11111 11223344555555555555555555444444332111 2
Q ss_pred eeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-ccCCcEEEEEEecCCCCEEEEEeCCCCEE
Q 009597 450 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIK 528 (531)
Q Consensus 450 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~ 528 (531)
+....-||. ..+..++|+||+++|++++.|..|+|-.+...-.+..+- +|..-|..++.-+ +..|+++|.|++|+
T Consensus 143 ~~~~~lGhv--Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 143 RCEPILGHV--SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLR 218 (390)
T ss_pred Ccchhhhhh--hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEE
Confidence 234466775 448889999999999999999999998888777777665 7999999999987 45689999999999
Q ss_pred eeC
Q 009597 529 YWD 531 (531)
Q Consensus 529 iWD 531 (531)
+||
T Consensus 219 ~Wd 221 (390)
T KOG3914|consen 219 LWD 221 (390)
T ss_pred EEe
Confidence 997
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.74 E-value=9.9e-08 Score=88.07 Aligned_cols=165 Identities=12% Similarity=0.159 Sum_probs=105.1
Q ss_pred eEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc-EEEEccCCCcc-eEEEEccCCCCCcEEEEee-----CC
Q 009597 277 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-VIRTFSTGKIP-YVVKLNPDDDKQNILLAGM-----SD 349 (531)
Q Consensus 277 ~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~-----~d 349 (531)
.+++.-|+++-.+-+.+--++.++++..||.+.+.+.+.-. ..+.+...+.. ...+... .++++.++. .-
T Consensus 82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~---~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICR---HGNSILSGGCGNWNAQ 158 (319)
T ss_pred eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceee---cccEEecCCcceEeec
Confidence 34444555544444444456679999999999999986511 11111111110 0111111 112333332 23
Q ss_pred CeEEEEECCCCceeEEEcccCCCeeEEEEecC-CCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC-CCCE
Q 009597 350 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNW 427 (531)
Q Consensus 350 g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~ 427 (531)
+..+.|+++..+....-......|.+++-+|. .+.+++|+.||.+.+||.+....+..+...|...|..+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 45566666543332222223345999999995 456778889999999999988666666667999999999999 7889
Q ss_pred EEEEEcCCeEEEEEcCC
Q 009597 428 LAAQSLDNQILIYSTRE 444 (531)
Q Consensus 428 l~s~s~Dg~I~iwd~~~ 444 (531)
|++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999875
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=1.7e-06 Score=90.87 Aligned_cols=245 Identities=11% Similarity=0.098 Sum_probs=176.5
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCc-ceEEEEccCCC---------CCcEEEEeeCCCeE
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDD---------KQNILLAGMSDKKI 352 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~---------~~~~l~sg~~dg~I 352 (531)
|...-.++.|+|.| +|+-|+ ...|.|-|..+.+.++.+..+.. +..+.|.+.+. .+-+|+++...|.|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 34446788999988 566666 45899999999999998876553 44566654321 34567888889999
Q ss_pred EEEECCCCceeEEEcccCCCeeEEEEec---CC-CEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC-CCCE
Q 009597 353 VQWDMNTKEITQEYDQHLGAVNTITFVD---SN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNW 427 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~~h~~~I~~l~~sp---~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~ 427 (531)
.+||...+..+..+..|..++..++|.+ +. ..|+.-....+|.+|+..++........ ......|+.+.| +.+.
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-s~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-SHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-CCcceeeeeeCCCCcce
Confidence 9999999999999999999999999987 33 4567777788999999999987765543 344566789998 7777
Q ss_pred EEEEEcCCeEEEEEcCCcc----eeceeeeecCCcc-----------------------ccceEEEEEcCCCCEEEEEeC
Q 009597 428 LAAQSLDNQILIYSTRERF----QLNKKKRFAGHIV-----------------------AGYACQVNFSPDGRFVMSGDG 480 (531)
Q Consensus 428 l~s~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~~-----------------------~~~v~~l~~spdg~~l~sgs~ 480 (531)
++.-+..|.+.+.+.-... ....++.-..|.. ..+...++|+|.-+.++-..-
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 8888888888777643211 0011111111100 012234678888777777777
Q ss_pred CCcEEEEECCCCeEEEEeeccCCcEEEEEEecCC-CCEEEEEeCCCCEEee
Q 009597 481 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE-QSKVATCGWDGLIKYW 530 (531)
Q Consensus 481 dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~l~t~s~Dg~I~iW 530 (531)
...+.|+|++-..++....-..+.+.-+.|.|+. ...|++...||.+.+|
T Consensus 251 prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 7889999999888888888777777778888843 3478888999999988
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.68 E-value=4.3e-06 Score=78.88 Aligned_cols=202 Identities=12% Similarity=0.126 Sum_probs=114.8
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC--------cceEEEEccCCCC---CcEEEEeeCCCeE
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--------IPYVVKLNPDDDK---QNILLAGMSDKKI 352 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~--------~~~~~~~~~~~~~---~~~l~sg~~dg~I 352 (531)
.-.=+.++||||+..||.+...|+|+++|+... .+..+.... ....+.|...... ...|++-...|.+
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 335678999999999999999999999998753 333443221 1111222221111 2357777788888
Q ss_pred EEEECCCC-----ceeEEE--cc-cCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCC
Q 009597 353 VQWDMNTK-----EITQEY--DQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 424 (531)
Q Consensus 353 ~iwd~~t~-----~~~~~~--~~-h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~ 424 (531)
+-|-+..+ +...++ .. +...|+++.++|..++|++|+.... ..+. .......+++-.+-.+
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-----s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-----SKASSCGLTAWRILSD 190 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-----ccccccCceEEEEcCC
Confidence 87765322 222333 22 4678999999999998888775332 0000 0001111222111111
Q ss_pred C-CEEE-EEEcCCe------EEEEEcCCcceeceeeeecC-CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 009597 425 T-NWLA-AQSLDNQ------ILIYSTRERFQLNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 495 (531)
Q Consensus 425 ~-~~l~-s~s~Dg~------I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~ 495 (531)
. .+.. +...|+. -.+|.+-+ .+.+.. ......|..|.+||||.+|++...+|.|.+|++.+.++.
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~------~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPS------FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred CCcEEEccccCccccccccccceeeccc------eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 1 1111 1111111 11222211 111111 112355788999999999999999999999999998888
Q ss_pred EEeeccCC
Q 009597 496 RTLKCHEG 503 (531)
Q Consensus 496 ~~~~~h~~ 503 (531)
..+..++.
T Consensus 265 ~~W~~~eq 272 (282)
T PF15492_consen 265 RSWKQDEQ 272 (282)
T ss_pred cccchhhC
Confidence 87765543
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.66 E-value=9e-08 Score=99.49 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=142.9
Q ss_pred eeEEecCccCceEEEEEccC-CCEEEEEecCCeEEEEeCCCCc-EEEEcc-CCCcceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 276 CMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ-VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 276 ~~~~l~gH~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~-~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
.-..+.||+.+|+++-|+|. ...|++|+.|-.+..||+.+.. .+..+. -+.....+.++...+ + +++.+....|
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p--~-vlasshg~~i 182 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP--N-VLASSHGNDI 182 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCc--c-hhhhccCCce
Confidence 34567899999999999995 4578999999999999997653 333332 233445566666444 2 5566677889
Q ss_pred EEEECCCC-ceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCC--EE
Q 009597 353 VQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN--WL 428 (531)
Q Consensus 353 ~iwd~~t~-~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l 428 (531)
.+||++.+ .++..+++|...|+.+.|.. ....+.+++.|++|+.||................+|..-++.|-|. ++
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 99999865 57888899999999999976 3456889999999999999776443333333566777777777433 33
Q ss_pred EEEEcCCeEEEEEcCCcc-------eeceeeeecCCccccceEEEEEcCC----------CCEEEEEeCCCcEEEEECCC
Q 009597 429 AAQSLDNQILIYSTRERF-------QLNKKKRFAGHIVAGYACQVNFSPD----------GRFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 429 ~s~s~Dg~I~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~l~~spd----------g~~l~sgs~dg~I~iwd~~~ 491 (531)
.-.-.++.+.+++.++.. ....+..|.||.. .|....|-.. .-.|++=+.|..+++|-+.+
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 322223355555544321 2244567888853 2433333221 22588999999999998753
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.4e-07 Score=91.56 Aligned_cols=241 Identities=14% Similarity=0.120 Sum_probs=173.9
Q ss_pred cCCCCCCCceeeeeeccc---CeeeEEecCccCceEEEEEccCCCEEEEEec-CCeEEEEeCCCCcEEEEccCCCcceEE
Q 009597 256 GNAGGEKGEHVEDKSTFH---GKCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQVIRTFSTGKIPYVV 331 (531)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~---~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~~t~~~i~~~~~~~~~~~~ 331 (531)
...+++-+++++.|.... -+.+..+..|...|.+++.+-++.++.|.+. |..++++|+++-..+.-+.....+..+
T Consensus 22 fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a 101 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA 101 (558)
T ss_pred eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce
Confidence 344567778888887644 3556778889999999999999999999777 999999999988877666666666555
Q ss_pred EEccCCC--CCcEEEEeeCCCeEEEEECCCCc--eeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC----Ce
Q 009597 332 KLNPDDD--KQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI----PV 403 (531)
Q Consensus 332 ~~~~~~~--~~~~l~sg~~dg~I~iwd~~t~~--~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~----~~ 403 (531)
.|..... ...+.++...++.|.++|-...- ....-..|..+|.++.+++.+..+++....|.|.-|.... ++
T Consensus 102 ~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr 181 (558)
T KOG0882|consen 102 EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPR 181 (558)
T ss_pred EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcc
Confidence 5544332 11334444567899999976543 3333456999999999999999999999999999998763 11
Q ss_pred E-EE-E--------eeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeee--------------------
Q 009597 404 V-IK-Y--------ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-------------------- 453 (531)
Q Consensus 404 ~-~~-~--------~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-------------------- 453 (531)
. +. . ..........++.|+|++..+.+-+.|..|+++..+++..+..+..
T Consensus 182 ~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel 261 (558)
T KOG0882|consen 182 TNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL 261 (558)
T ss_pred ccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence 1 00 0 0011345578999999999999999999999999988754322111
Q ss_pred ---------ecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009597 454 ---------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 498 (531)
Q Consensus 454 ---------~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 498 (531)
+..|. ...-+.+.|...|++|+-|+-=| |++.++.++.+.+.+
T Consensus 262 gRRmaverelek~~-~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 262 GRRMAVERELEKHG-STVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhHHhhHhhhc-CcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 11111 12233478999999999887664 888888888877665
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.66 E-value=1.6e-05 Score=90.17 Aligned_cols=239 Identities=11% Similarity=0.163 Sum_probs=157.0
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEE----eCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECC
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYW----DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 358 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vW----d~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~ 358 (531)
....|.++.|-++...++.+..+|.|.+. +..+...-..-.......+.+|+|+. .+|+..+.+++|.+.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~---Ella~vT~~~~l~~mt~- 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDE---ELLALVTGEGNLLLMTR- 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCc---CEEEEEeCCCEEEEEec-
Confidence 45789999999998889999999999999 65555443333344556667777754 57777887888887642
Q ss_pred CCceeE------------------------EEcc------------------------cCCCeeEEEEecCCCEEEEEeC
Q 009597 359 TKEITQ------------------------EYDQ------------------------HLGAVNTITFVDSNRRFVTSSD 390 (531)
Q Consensus 359 t~~~~~------------------------~~~~------------------------h~~~I~~l~~sp~~~~l~s~s~ 390 (531)
+.+++. .|.+ +...-..|+|-.||.+|++.+.
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 111111 1100 2223457889999999998875
Q ss_pred ---C---CCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc---CCeEEEEEcCCcceeceeeeecCCcccc
Q 009597 391 ---D---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL---DNQILIYSTRERFQLNKKKRFAGHIVAG 461 (531)
Q Consensus 391 ---D---g~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 461 (531)
. +.+|||+-+ +. +....++-.+--.+++|.|+|++||+... ...|.+|.- ++.+-..+. +.......
T Consensus 230 ~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~-l~~~~~~~ 305 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFT-LRFDPEEE 305 (928)
T ss_pred EcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEe-cCCCCCCc
Confidence 2 479999966 43 34444445555678999999999998765 345666653 332221111 11112234
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--Eeecc-CCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 462 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLKCH-EGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 462 ~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~--~~~~h-~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.+..+.|++|+..|+....|. |.+|-..+..-.. .+... ...+..+.|+|.....|.....+|.+..+
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred eeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 578899999999999987665 9999888765332 23322 23445699999777777777776766543
No 295
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.65 E-value=9.9e-07 Score=94.09 Aligned_cols=178 Identities=16% Similarity=0.215 Sum_probs=136.1
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEE
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 420 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~ 420 (531)
..++.|+-...+..+|+++.+..+......+.|.-+.. +++.+.+|...|+|.+-|.++.+.++.+.. |.+.|..+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSDfD 224 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISDFD 224 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeec-cccceeeee
Confidence 56888888889999999999888877665555555544 678999999999999999999999988864 888887766
Q ss_pred EeCCCCEEEEEEc---------CCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEE--
Q 009597 421 LHPNTNWLAAQSL---------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWD-- 488 (531)
Q Consensus 421 ~sp~~~~l~s~s~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~iwd-- 488 (531)
. .|+.|++++. |.-|+|||+|....+..+....+.. -+.|.|. ...+++.+..|...+-|
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~------flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ------FLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch------hhhhcccccceEEEEecccceeecccc
Confidence 5 5888988874 5678999999987776655444432 1567775 45677888899999998
Q ss_pred -CCCCe-EEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 489 -WKSCK-VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 489 -~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+.+.. -+..+......|..+.+++ ++..++.+..+|.|.+|
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLW 339 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcEeee
Confidence 33321 1222223344589999999 88999999999999999
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=2.3e-08 Score=105.56 Aligned_cols=215 Identities=13% Similarity=0.244 Sum_probs=149.9
Q ss_pred eeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCC-eEE
Q 009597 275 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIV 353 (531)
Q Consensus 275 ~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~I~ 353 (531)
+..++|..|...-+|++|+-+.++|+.|+..|.|+++++.+|........ |...+..+.|.-++..+|.+.+... -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHH
Confidence 56678899999999999999999999999999999999999988877744 3444555566555545555555444 667
Q ss_pred EEECCC-CceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC---CCCCccEEEEeCCCCEEE
Q 009597 354 QWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLA 429 (531)
Q Consensus 354 iwd~~t-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~~~~l~ 429 (531)
+|++.+ +...++|. .-.++.|+.....-+.|+.-....|||+.++..+..+..+ ....-.++.|+|...+++
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 899854 45555554 3467888876554455555567999999998766553221 222346788999888776
Q ss_pred EEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEE
Q 009597 430 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 509 (531)
Q Consensus 430 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~ 509 (531)
- || .+||.+....+..+..|.-... =.|+|.|.-++.-+. |||+++.++++....-.. ..+.
T Consensus 1247 n---dG--vLWDvR~~~aIh~FD~ft~~~~------G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq--c~Vt 1308 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFTDYGG------GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ--CAVT 1308 (1516)
T ss_pred e---Cc--eeeeeccHHHHhhhhhheeccc------ccccCCCceEEeech-----hhhhHHHHHHhcCccccc--eEEE
Confidence 4 44 5899998766655555442211 358999998887664 899999888776653322 2455
Q ss_pred Eec
Q 009597 510 WHP 512 (531)
Q Consensus 510 ~~p 512 (531)
|+.
T Consensus 1309 FNs 1311 (1516)
T KOG1832|consen 1309 FNS 1311 (1516)
T ss_pred ecc
Confidence 554
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.64 E-value=3.8e-06 Score=84.54 Aligned_cols=238 Identities=14% Similarity=0.192 Sum_probs=152.5
Q ss_pred ecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeC-----------
Q 009597 280 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS----------- 348 (531)
Q Consensus 280 l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~----------- 348 (531)
+..-.-++..++|||.|++|++...- .|.+|....+..+..+.+ ..+.-+.|++. +.+|.+-+.
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~---~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH-PDVKYLDFSPN---EKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred ccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeeec-CCceecccCcc---cceeeeeccCCccChhhccC
Confidence 33356689999999999999887754 699999887776665533 33344444443 345555433
Q ss_pred ----CCeEEEEECCCCceeEEEcccCCC--ee-EEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEE
Q 009597 349 ----DKKIVQWDMNTKEITQEYDQHLGA--VN-TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 421 (531)
Q Consensus 349 ----dg~I~iwd~~t~~~~~~~~~h~~~--I~-~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~ 421 (531)
+..+.+||+.++.++..+.....+ .+ -+.|+-+..+++-.. ...+.|+++.......-+..-....|....|
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhccccceeeEEe
Confidence 336999999999999999877666 55 678888887766542 3459999972221111111112356788888
Q ss_pred eCCC--CEEEE-----EEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe-----------CCCc
Q 009597 422 HPNT--NWLAA-----QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-----------GEGK 483 (531)
Q Consensus 422 sp~~--~~l~s-----~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-----------~dg~ 483 (531)
+|.+ ..|+. ....++++||.+.....+.....+... -+++.|.+.|.+|++-- ....
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~-----~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS-----GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec-----ccEEEEecCCceEEEEEEEeeecccceeccce
Confidence 8853 33443 346789999999866555444433322 45588999998876421 2356
Q ss_pred EEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEe--CCCCEEee
Q 009597 484 CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG--WDGLIKYW 530 (531)
Q Consensus 484 I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s--~Dg~I~iW 530 (531)
++|+++... -+.....-.++|...+|.|.. +.+++++ .+-.+.++
T Consensus 257 Lyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 257 LYLLRITER-SIPVEKDLKDPVHDFTWEPLS-SRFAVISGYMPASVSVF 303 (561)
T ss_pred EEEEeeccc-ccceeccccccceeeeecccC-CceeEEecccccceeec
Confidence 888887733 233333457899999999944 4444443 34444443
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=2.8e-06 Score=89.20 Aligned_cols=235 Identities=16% Similarity=0.090 Sum_probs=164.2
Q ss_pred HhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccC------C------CEEEEEecCCeEEEEeCCCCc
Q 009597 250 KKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCND------G------TKFLTASYDKNIKYWDTETGQ 317 (531)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspd------g------~~l~s~s~Dg~I~vWd~~t~~ 317 (531)
+++.+.+.. +....|.+.+..+-+.+..+.-|...|+.+.|.|- + -+|+++...|.|.|||...+.
T Consensus 23 w~~~GLiAy--gshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s 100 (1062)
T KOG1912|consen 23 WSPSGLIAY--GSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS 100 (1062)
T ss_pred cCccceEEE--ecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh
Confidence 444443333 33446777788888999999999999999999872 1 146777788999999999988
Q ss_pred EEEEccCCC-cceEEEEccCCCCC-cEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCE
Q 009597 318 VIRTFSTGK-IPYVVKLNPDDDKQ-NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSL 394 (531)
Q Consensus 318 ~i~~~~~~~-~~~~~~~~~~~~~~-~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I 394 (531)
.+..+..+. ....++|.+..+.. .+|++-.....|.+|+..+|+....+........|+.+.| +.+.|..-+..|.+
T Consensus 101 ~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 101 VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence 887776543 34556666554444 6788888889999999999999998887778888999998 66777777777777
Q ss_pred EEEEcCC------CeEEEEeeCCCCC------------C-------------ccEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 009597 395 RVWEFGI------PVVIKYISEPHMH------------S-------------MPSISLHPNTNWLAAQSLDNQILIYSTR 443 (531)
Q Consensus 395 ~iwd~~~------~~~~~~~~~~~~~------------~-------------v~~v~~sp~~~~l~s~s~Dg~I~iwd~~ 443 (531)
.+-+.-. +....++..+|.. . ...++|+|.-+.++.......+.|+|+.
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch
Confidence 7766421 1122223322222 0 1235678876666666778899999998
Q ss_pred CcceeceeeeecCCccccceEEEEEcCCC--CEEEEEeCCCcEEEEECCC
Q 009597 444 ERFQLNKKKRFAGHIVAGYACQVNFSPDG--RFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg--~~l~sgs~dg~I~iwd~~~ 491 (531)
-..++..+..-.+ .+.-+.+-|++ ..|+++..+|.+.||--+.
T Consensus 261 ~~~~l~vvpier~-----~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 261 YECCLAVVPIERG-----GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhceeEEEEeccC-----CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 7666544433222 23336666654 5799999999999997554
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=4.2e-06 Score=84.93 Aligned_cols=224 Identities=13% Similarity=0.246 Sum_probs=145.4
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeC-----------CCeEEEE
Q 009597 287 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS-----------DKKIVQW 355 (531)
Q Consensus 287 V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-----------dg~I~iw 355 (531)
=+-+.|||-|++|+|-..-| |.+|--++-..++.|. +..+..+.|+|.. .+|++-+. ...|+||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~Vq~idfSP~E---kYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPGVQFIDFSPNE---KYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCCceeeecCCcc---ceEEEecCCccccCcccCCCceEEEE
Confidence 46689999999999988754 8999877767777773 3444556666643 46666432 2589999
Q ss_pred ECCCCceeEEEccc--CCCee-EEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEE
Q 009597 356 DMNTKEITQEYDQH--LGAVN-TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 432 (531)
Q Consensus 356 d~~t~~~~~~~~~h--~~~I~-~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s 432 (531)
|+.+|...+.|... ...++ -..||.++++++.-..+ +|.||+..+...+..- .-....|....|+|.+++||--.
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~K-slki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKK-SLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccc-ccCCccccCcccCCCcceEEEEc
Confidence 99999998888663 23333 35899999999987775 5999998764333221 12456788999999998887543
Q ss_pred cC-----CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEE
Q 009597 433 LD-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD----------GEGKCWFWDWKSCKVFRT 497 (531)
Q Consensus 433 ~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs----------~dg~I~iwd~~~~~~~~~ 497 (531)
.. ..+.+..+.++..+.....+. ..-|.+-|-.+|.+|+.-- .-..+-|+.++....--.
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfn-----VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFN-----VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred ccccCCcceEEEEecCccceeeecccee-----eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 22 356667776665554333322 2245688888999987532 112355555554332222
Q ss_pred eeccCCcEEEEEEecCCCCEEEEEe
Q 009597 498 LKCHEGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 498 ~~~h~~~V~~v~~~p~~~~~l~t~s 522 (531)
...-...|...+|-|.+..+.+..+
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g 465 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISG 465 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEc
Confidence 2224567899999995444443333
No 300
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.59 E-value=1.6e-05 Score=79.30 Aligned_cols=122 Identities=14% Similarity=0.192 Sum_probs=99.7
Q ss_pred cCccCceEEEEEccCCCEEEEEecCC-eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCC
Q 009597 281 MGHSKAVRDISFCNDGTKFLTASYDK-NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 359 (531)
Q Consensus 281 ~gH~~~V~~l~fspdg~~l~s~s~Dg-~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t 359 (531)
-+|.+.|+-..+.-++.-++.|..|| .|-|+|..+++..+....-.....+...+++ ..++++.....|.+.|+.+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dG---K~~vvaNdr~el~vididn 432 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDG---KKVVVANDRFELWVIDIDN 432 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCC---cEEEEEcCceEEEEEEecC
Confidence 36888899999998888899999999 8999999999877766666666677777644 5688888889999999999
Q ss_pred CceeEEEcccCCCeeEEEEecCCCEEEEEeCCC----CEEEEEcCCCeEE
Q 009597 360 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIPVVI 405 (531)
Q Consensus 360 ~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg----~I~iwd~~~~~~~ 405 (531)
+.....-+...+-|+.++|+|++++|+-+--+| .|+++|+..++..
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 987666566778899999999999999876655 6889998765443
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.56 E-value=5e-06 Score=77.34 Aligned_cols=168 Identities=13% Similarity=0.154 Sum_probs=114.5
Q ss_pred cEEEEeeCCCeEEEEECCCCcee-EEEcccCCCeeEEE-EecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccE
Q 009597 341 NILLAGMSDKKIVQWDMNTKEIT-QEYDQHLGAVNTIT-FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 418 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~-~~~~~h~~~I~~l~-~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~ 418 (531)
.+|+.|+..|...+|...+.+.. +....|...|.-+. .....-.+..++.|.++++.++..+........+. -.+.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~-~~~ns 163 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN-LTQNS 163 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-cceee
Confidence 57999999999999999876543 33344443332221 11122346778889999998886654333332211 33889
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEcCCcc-eeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--
Q 009597 419 ISLHPNTNWLAAQSLDNQILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF-- 495 (531)
Q Consensus 419 v~~sp~~~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~-- 495 (531)
+.++++++++++.+....|..|.+.... .+.. ...... ...-.+..|+.....+|++..||.+.|||++.....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~--~~~a~t-~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN--IYEAPT-SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeee--eEeccc-CCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 9999999999999999999999987532 2222 111111 122344789999999999999999999999864332
Q ss_pred ---EEeeccCCcEEEEEEec
Q 009597 496 ---RTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 496 ---~~~~~h~~~V~~v~~~p 512 (531)
.+-..|.+.+..+.|++
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred hhcccCCCCCCceEEEEecC
Confidence 22235889999999998
No 302
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.55 E-value=9.3e-06 Score=81.01 Aligned_cols=175 Identities=18% Similarity=0.262 Sum_probs=125.1
Q ss_pred Ecc-CCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCC-eEEEEECCCCceeEEEccc
Q 009597 292 FCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQH 369 (531)
Q Consensus 292 fsp-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~I~iwd~~t~~~~~~~~~h 369 (531)
|++ +|.+++..|. |...|.+...+-.++.-..+. +.-..+...+ .-++.|..|| .|-|+|.++++. ..+...
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~-VrY~r~~~~~---e~~vigt~dgD~l~iyd~~~~e~-kr~e~~ 400 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVGKKGG-VRYRRIQVDP---EGDVIGTNDGDKLGIYDKDGGEV-KRIEKD 400 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEcCCCCc-eEEEEEccCC---cceEEeccCCceEEEEecCCceE-EEeeCC
Confidence 444 6888888885 678888776666555432222 2223333333 3588999999 999999987764 455567
Q ss_pred CCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCC----eEEEEEcCCc
Q 009597 370 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN----QILIYSTRER 445 (531)
Q Consensus 370 ~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg----~I~iwd~~~~ 445 (531)
.+.|.++..+++|++++.+.....|.+.|+.++... .+......-|+.++|||++++||-+--+| .|++||+..+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 789999999999999999998889999999988653 33344567799999999999999877665 7999999876
Q ss_pred ceeceeeeecCCccccceEEEEEcCCCCEEEEEe
Q 009597 446 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 479 (531)
Q Consensus 446 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 479 (531)
+.. ...+..++ -.+-+|.|++++|.--+
T Consensus 480 Kiy-~vTT~ta~-----DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 480 KIY-DVTTPTAY-----DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEE-EecCCccc-----ccCcccCCCCcEEEEEe
Confidence 433 22222333 22367888888876443
No 303
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=1.5e-06 Score=90.37 Aligned_cols=236 Identities=11% Similarity=0.146 Sum_probs=154.6
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEE---------------EEccCCCcceEEEEccCCCCCcEEEEeeC
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI---------------RTFSTGKIPYVVKLNPDDDKQNILLAGMS 348 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i---------------~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 348 (531)
.....|+.|+....+++.|+.||.++|..+.+...- +++ .+|...+....+... ...|-+...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~-~QKLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN-NQKLTTSDT 91 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc-cccccccCC
Confidence 346789999999999999999999999987653211 112 233333333334332 345888889
Q ss_pred CCeEEEEECCCCceeEEE--cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCC
Q 009597 349 DKKIVQWDMNTKEITQEY--DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN 426 (531)
Q Consensus 349 dg~I~iwd~~t~~~~~~~--~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 426 (531)
+|.|.+|-+-.+.-..++ ......|.+++|+-+|..+...-.||.|.+=.++..+....-. ...-...+.|+++.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc--chheccceeecccHH
Confidence 999999998766543322 3355778999999999999999999988877666543322111 122345788999999
Q ss_pred EEEEEEcCCeEEEEEcCCcceeceee----eecCCc--cccceEEEEE--------cCCCCEEEEEeCCCcEEEEECCCC
Q 009597 427 WLAAQSLDNQILIYSTRERFQLNKKK----RFAGHI--VAGYACQVNF--------SPDGRFVMSGDGEGKCWFWDWKSC 492 (531)
Q Consensus 427 ~l~s~s~Dg~I~iwd~~~~~~~~~~~----~~~~~~--~~~~v~~l~~--------spdg~~l~sgs~dg~I~iwd~~~~ 492 (531)
.++.+-.+|.+.+||....+...... ...+.. ....+-.+.| -|+...|+++-..|.+.|-.-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 99999999999999987654321110 000000 0111223444 357888999999998887643322
Q ss_pred eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCC
Q 009597 493 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 525 (531)
Q Consensus 493 ~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg 525 (531)
..-..+. -.-.|....|++ ++.+|+.||.|.
T Consensus 250 ~~Pvv~d-tgm~~vgakWnh-~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 250 PEPVVVD-TGMKIVGAKWNH-NGAVLAVCGNDS 280 (1189)
T ss_pred CCCeEEe-cccEeecceecC-CCcEEEEccCcc
Confidence 2111222 124678899999 888999998753
No 304
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=0.0001 Score=76.69 Aligned_cols=160 Identities=9% Similarity=0.087 Sum_probs=100.9
Q ss_pred CCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEE-eCC--CCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCC
Q 009597 349 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS-SDD--KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT 425 (531)
Q Consensus 349 dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~-s~D--g~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~ 425 (531)
...|.++|+.+++...... ..+......|+|+|+.++.. +.+ ..|.++|+..+... .+.. +........|+|+|
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~-~~~~d~~p~~SPDG 288 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITN-YPGIDVNGNFVEDD 288 (419)
T ss_pred CCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-Eccc-CCCccCccEECCCC
Confidence 4579999998887655443 45566778899999877644 333 45777788777543 3332 22234456899999
Q ss_pred CEEEEEEcC-C--eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCe
Q 009597 426 NWLAAQSLD-N--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---------GKCWFWDWKSCK 493 (531)
Q Consensus 426 ~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---------g~I~iwd~~~~~ 493 (531)
+.|+..+.. + .|.++|+.++.... + .+.+. . ...|||||++|+..... ..|++.|+.++.
T Consensus 289 ~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l-t~~g~----~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 289 KRIVFVSDRLGYPNIFMKKLNSGSVEQ-V-VFHGK----N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEe-C-ccCCC----c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 988776643 3 67788887654321 1 11222 1 14899999998876643 368888988776
Q ss_pred EEEEeeccCCcEEEEEEecCCCCEEEEEe
Q 009597 494 VFRTLKCHEGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 494 ~~~~~~~h~~~V~~v~~~p~~~~~l~t~s 522 (531)
. ..+... +......|+| ++..|+-.+
T Consensus 361 ~-~~LT~~-~~~~~p~~SP-DG~~I~f~~ 386 (419)
T PRK04043 361 I-RRLTAN-GVNQFPRFSS-DGGSIMFIK 386 (419)
T ss_pred e-EECCCC-CCcCCeEECC-CCCEEEEEE
Confidence 4 334322 2334688999 555444433
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=3.1e-07 Score=61.09 Aligned_cols=39 Identities=31% Similarity=0.585 Sum_probs=36.6
Q ss_pred CeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 492 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 492 ~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
++++.++.+|.+.|.+++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 468899999999999999999 788999999999999997
No 306
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=0.00012 Score=71.39 Aligned_cols=210 Identities=12% Similarity=0.194 Sum_probs=131.3
Q ss_pred CCeEEEEeCCCC--c--EEEEccCCCcceEEEEccCCCCCcEEEEeeC---CCeEEEEECCC--CceeE--EEcccCCCe
Q 009597 305 DKNIKYWDTETG--Q--VIRTFSTGKIPYVVKLNPDDDKQNILLAGMS---DKKIVQWDMNT--KEITQ--EYDQHLGAV 373 (531)
Q Consensus 305 Dg~I~vWd~~t~--~--~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---dg~I~iwd~~t--~~~~~--~~~~h~~~I 373 (531)
+.-|++|++.+. + .+........+.-+.+.+.. +.|.++.. +|.|..|.+.. |.... .......+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~---~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ---RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCC---CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 467999988732 2 22333334445556666643 45555543 57787777754 44322 112222344
Q ss_pred eEEEEecCCCEEEEEeC-CCCEEEEEcCC-CeEE---EEeeCCCCCC----------ccEEEEeCCCCEEEEEEcC-CeE
Q 009597 374 NTITFVDSNRRFVTSSD-DKSLRVWEFGI-PVVI---KYISEPHMHS----------MPSISLHPNTNWLAAQSLD-NQI 437 (531)
Q Consensus 374 ~~l~~sp~~~~l~s~s~-Dg~I~iwd~~~-~~~~---~~~~~~~~~~----------v~~v~~sp~~~~l~s~s~D-g~I 437 (531)
..+++++++++++++.. -|.|.++-++. +... ..+. |..+ +....+.|++++|++.... ..|
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence 78999999999888875 57899998865 3221 1221 3333 7889999999999988754 479
Q ss_pred EEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-eEEEEeecc---------CCcEE
Q 009597 438 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSC-KVFRTLKCH---------EGVCI 506 (531)
Q Consensus 438 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~-~~~~~~~~h---------~~~V~ 506 (531)
.+|++..+.... .....- ........|.|+|++++..+.. -+++|.+|..... ..+..++.+ .....
T Consensus 170 ~~y~~~dg~L~~-~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 170 FLYDLDDGKLTP-ADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred EEEEcccCcccc-cccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 999998654322 211111 2234467799999999988776 5889999998763 222323221 22456
Q ss_pred EEEEecCCCCEEEEEe
Q 009597 507 GCEWHPLEQSKVATCG 522 (531)
Q Consensus 507 ~v~~~p~~~~~l~t~s 522 (531)
.+..++ ++++|.++-
T Consensus 248 aIhis~-dGrFLYasN 262 (346)
T COG2706 248 AIHISP-DGRFLYASN 262 (346)
T ss_pred EEEECC-CCCEEEEec
Confidence 777888 777777664
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=7e-06 Score=86.87 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=128.9
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCcee
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 363 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~ 363 (531)
...++|++++ +++|+-|+.+|.|++.+....- ...+.+ +.....+.++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~---------s~~~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDH---------SSSILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-cccccc---------cccccCCceEEEecCCCcEEEeeccCCccc
Confidence 4567788775 5689999999999999864332 222211 111445689999999999999999888877
Q ss_pred EEEcccCCCeeEEEEecC-----CCEEEEEeCCCCEEEEEcCCCeEE-EEeeCCCCCCccEEEEeCCCCEEEEEEcCCeE
Q 009597 364 QEYDQHLGAVNTITFVDS-----NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 437 (531)
Q Consensus 364 ~~~~~h~~~I~~l~~sp~-----~~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I 437 (531)
.++.- ..++.+|+++|+ .++|++|+.-| +.++.-+-.... ........++|.++.|. |+++|-++.+| |
T Consensus 107 ~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v 181 (846)
T KOG2066|consen 107 TQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-V 181 (846)
T ss_pred eeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence 77764 478999999997 57899999988 777764321111 11223367889999996 77777766555 8
Q ss_pred EEEEcCCcceeceeeeecCC-ccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009597 438 LIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 490 (531)
Q Consensus 438 ~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 490 (531)
+|||+..+..+..+...... ......+.+.|.++.++ +.|=.| +|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGD-SVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEecCC-eEEEEEEe
Confidence 99999987766544432221 11234556888877654 445444 68888776
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.42 E-value=0.00024 Score=67.23 Aligned_cols=223 Identities=15% Similarity=0.199 Sum_probs=127.3
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCC--cEEEE--ccCCCcc--eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCce
Q 009597 289 DISFCNDGTKFLTASYDKNIKYWDTETG--QVIRT--FSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 362 (531)
Q Consensus 289 ~l~fspdg~~l~s~s~Dg~I~vWd~~t~--~~i~~--~~~~~~~--~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~ 362 (531)
.++.+.+|+.||..- |..|.|=...+. .++.. +.....+ .-++|++ ++.+|+.+...|+|++||+....
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp---D~tlLa~a~S~G~i~vfdl~g~~- 76 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP---DCTLLAYAESTGTIRVFDLMGSE- 76 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECC---CCcEEEEEcCCCeEEEEecccce-
Confidence 356778898666554 667777655432 22222 2222333 3355554 34689999999999999997533
Q ss_pred eEEEcc-------cCCCeeEEEEecCC------CEEEEEeCCCCEEEEEcCCC-----eEEE--EeeCCCCCCccEEEEe
Q 009597 363 TQEYDQ-------HLGAVNTITFVDSN------RRFVTSSDDKSLRVWEFGIP-----VVIK--YISEPHMHSMPSISLH 422 (531)
Q Consensus 363 ~~~~~~-------h~~~I~~l~~sp~~------~~l~s~s~Dg~I~iwd~~~~-----~~~~--~~~~~~~~~v~~v~~s 422 (531)
+..+.. -..+|..+.|.+.. ..|++-..+|.++-|-+..+ +... .+...+...|.++.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 333322 13567778787532 24777778888887765321 1222 2223356789999999
Q ss_pred CCCCEEEEEEcCCeE-EEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC------cEEEEECCCCeEE
Q 009597 423 PNTNWLAAQSLDNQI-LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG------KCWFWDWKSCKVF 495 (531)
Q Consensus 423 p~~~~l~s~s~Dg~I-~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg------~I~iwd~~~~~~~ 495 (531)
|..++|++|+....= ..... ...-+...+.+.+ +|....+ +...++ +..+|.+-+.+..
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a-~~~GLtaWRiL~~------------~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~f 222 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKA-SSCGLTAWRILSD------------SPYYKQV-TSSEDDITASSKRRGLLRIPSFKFF 222 (282)
T ss_pred CCCCEEEEeccCCCCCccccc-cccCceEEEEcCC------------CCcEEEc-cccCccccccccccceeeccceeee
Confidence 998888887754320 00000 0000111111111 1111111 111121 1234444444444
Q ss_pred EEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 496 RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 496 ~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.........|..+..+| ++.+||+...+|.|.+|+
T Consensus 223 s~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 223 SRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWE 257 (282)
T ss_pred eccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEe
Confidence 33334566899999999 889999999999999996
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.42 E-value=5.5e-05 Score=78.53 Aligned_cols=251 Identities=10% Similarity=0.082 Sum_probs=149.7
Q ss_pred CCCceeeeeecccCeeeEEecCccC----------ceE-EEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcce
Q 009597 261 EKGEHVEDKSTFHGKCMRTYMGHSK----------AVR-DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY 329 (531)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~~l~gH~~----------~V~-~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~ 329 (531)
..++.+.-.+..+|+.+....-... .+. .+.. ++..++.++.++.|..+|.++|+.+..........
T Consensus 76 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 153 (394)
T PRK11138 76 DRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEAL 153 (394)
T ss_pred CCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccccCCCcee
Confidence 4455667777777777766543220 010 1111 34567778889999999999999988776544321
Q ss_pred EEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCe-----eEEEEecCCCEEEEEeCCCCEEEEEcCCCeE
Q 009597 330 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRVWEFGIPVV 404 (531)
Q Consensus 330 ~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I-----~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~ 404 (531)
..-... +..++++..++.|..+|..+|+.+..+......+ .+-.. .+..++.++.++.+..+|..+++.
T Consensus 154 ssP~v~----~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~ 227 (394)
T PRK11138 154 SRPVVS----DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQL 227 (394)
T ss_pred cCCEEE----CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChh
Confidence 111111 2457778889999999999999988775431111 11111 234567777889999999988865
Q ss_pred EEEeeCCCC---C---CccEEEEeC--CCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEE
Q 009597 405 IKYISEPHM---H---SMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 476 (531)
Q Consensus 405 ~~~~~~~~~---~---~v~~v~~sp--~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 476 (531)
+........ . ....+..+| .+..+++++.+|.+..+|..++..+.... + +. ...+. ..+..|+
T Consensus 228 ~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~-~~-----~~~~~--~~~~~vy 298 (394)
T PRK11138 228 IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-Y-GS-----VNDFA--VDGGRIY 298 (394)
T ss_pred hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-C-CC-----ccCcE--EECCEEE
Confidence 543321110 0 011111222 35567778889999999999886553322 1 11 11122 2466788
Q ss_pred EEeCCCcEEEEECCCCeEEEEeeccC-CcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 477 SGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 477 sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.++.+|.|+.+|..+++.+-....-. ....+.... +..|+.++.||.|.+.|
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEeCCCEEEEEE
Confidence 88899999999999998765443211 112222222 24566777788776654
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=3.8e-05 Score=82.00 Aligned_cols=209 Identities=13% Similarity=0.138 Sum_probs=137.8
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCC-----eEEEEECCCC
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTK 360 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~I~iwd~~t~ 360 (531)
.|+| |++.+..++.|+.+|.|.+.+- ..+.++.|...... ++.+....++.++|++.+.|+ .|+||+++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4444 5677888999999999888763 33444666554444 444444445556777766654 5899998532
Q ss_pred ------ceeE--EEcc-----cCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC---CeEEEEeeCCCCCCccEEEEeCC
Q 009597 361 ------EITQ--EYDQ-----HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---PVVIKYISEPHMHSMPSISLHPN 424 (531)
Q Consensus 361 ------~~~~--~~~~-----h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~---~~~~~~~~~~~~~~v~~v~~sp~ 424 (531)
.++. .+.. ...++.+++.+.+-+.+|+|-.+|.|..+.-+. ......+......+|+.+++..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2331 1122 246789999999999999999999999885321 11122233446789999999998
Q ss_pred CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-ccCC
Q 009597 425 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEG 503 (531)
Q Consensus 425 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~ 503 (531)
+..++-...-..|.+|.+..+. .....+..| +....|..+++...-+++++.. .|.+|+.....+...+. +|..
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~--G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT--PSLKVLDNN--GISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred CceeEEEEecceeEEEEecCCC--cceeeeccC--CccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeE
Confidence 8875555566789999998543 223334444 4557778888765535555443 69999988766666676 6654
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.4e-06 Score=84.59 Aligned_cols=212 Identities=13% Similarity=0.158 Sum_probs=137.9
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEcc--CCCcceEEEEccCCCCCcEEEEeeC-CCeEEEEECCC
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDMNT 359 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~-dg~I~iwd~~t 359 (531)
|...|+.+.-+. .+++++++.||.++.|.-..-.-+.-+. ..+...+..+... -.+.++.+++. |..++++|+.+
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S-~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS-YDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc-ccceeEeeccCcccceeEEEeec
Confidence 888888887654 5689999999999999753312221111 1111122222222 23456777666 99999999987
Q ss_pred CceeEEEcc--cCCCeeEEEEecCC--C-EE-EEEeCCCCEEEEEcCCCe-EEEEeeCCCCCCccEEEEeCCCCEEEEEE
Q 009597 360 KEITQEYDQ--HLGAVNTITFVDSN--R-RF-VTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQS 432 (531)
Q Consensus 360 ~~~~~~~~~--h~~~I~~l~~sp~~--~-~l-~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~s~s 432 (531)
-..+.-++. -.+.+.++ ...| . .+ ++.-.++.+.|+|-.... .......-|..+|.++.+++.+..+++..
T Consensus 86 ~DminmiKL~~lPg~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 665533322 22222222 1222 1 22 233457889999977654 44455566999999999999999999999
Q ss_pred cCCeEEEEEcCCcceecee------e----eecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009597 433 LDNQILIYSTRERFQLNKK------K----RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 498 (531)
Q Consensus 433 ~Dg~I~iwd~~~~~~~~~~------~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 498 (531)
..|.|.-|......+.... + .+.-........++.|+|+|..+.+-+.|..|++++.+++++++.+
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999999988742111100 0 0111222455777999999999999999999999999998875544
No 312
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.37 E-value=0.00014 Score=82.57 Aligned_cols=202 Identities=15% Similarity=0.218 Sum_probs=129.2
Q ss_pred ccCceEEEEEccCCCEEEEEec---C---CeEEEEeCCCCcEEEEcc-CCCcceEEEEccCCCCCcEEEEeeC---CCeE
Q 009597 283 HSKAVRDISFCNDGTKFLTASY---D---KNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMS---DKKI 352 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~---D---g~I~vWd~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~---dg~I 352 (531)
+...-..|+|..||.+||+.+. . +.||||+-+ |....+-. .......++|.|.+ +++++... ...|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG---~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG---NLIASSQRLPDRHDV 283 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC---CEEEEEEEcCCCcEE
Confidence 4456678999999999998765 2 589999975 65544432 12223456666643 56666543 3456
Q ss_pred EEEECCCCceeEEEc----ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEE--EEeeCCCCCCccEEEEeC-CC
Q 009597 353 VQWDMNTKEITQEYD----QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEPHMHSMPSISLHP-NT 425 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~----~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~~~~~v~~v~~sp-~~ 425 (531)
.+|.- +|-...+|. .....|..|.|++++..|+....|. |.+|-...-... +.+.-+....+..+.|+| +.
T Consensus 284 vFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 284 VFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 66653 343333332 3456899999999999999987666 999998776422 222223344566699999 45
Q ss_pred CEEEEEEcCCeEEEEEcCCcceec---------ee----------eeec-----------CCccccceEEEEEcCCCCEE
Q 009597 426 NWLAAQSLDNQILIYSTRERFQLN---------KK----------KRFA-----------GHIVAGYACQVNFSPDGRFV 475 (531)
Q Consensus 426 ~~l~s~s~Dg~I~iwd~~~~~~~~---------~~----------~~~~-----------~~~~~~~v~~l~~spdg~~l 475 (531)
..|.+.+.+|.+..++..-..... .. ..|. .-.....|.+++|++++..+
T Consensus 362 ~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~ 441 (928)
T PF04762_consen 362 LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRF 441 (928)
T ss_pred CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeE
Confidence 567777776777665532110000 00 0000 01123568889999999889
Q ss_pred EEEeCCCcEEEEECC
Q 009597 476 MSGDGEGKCWFWDWK 490 (531)
Q Consensus 476 ~sgs~dg~I~iwd~~ 490 (531)
++-..||.|.+|.+.
T Consensus 442 avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 442 AVLTSDGSLSIYEWD 456 (928)
T ss_pred EEEECCCCEEEEEec
Confidence 999999999999854
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.34 E-value=0.00011 Score=81.30 Aligned_cols=236 Identities=12% Similarity=0.147 Sum_probs=146.6
Q ss_pred CceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECC----C-
Q 009597 285 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN----T- 359 (531)
Q Consensus 285 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~----t- 359 (531)
..|.++.|..++..++.+..+|.|.+-|.++......-.....+.+.+|+++. .+++..+..++|.+-+-. .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~De---e~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDE---ELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCC---cEEEEEeCCcEEEEEeccccchhc
Confidence 68999999999888999999999999998887665544445555666666643 466666666666654320 0
Q ss_pred ------------------CceeEEEccc---------------------CCCeeEEEEecCCCEEEEEe-----CCCCEE
Q 009597 360 ------------------KEITQEYDQH---------------------LGAVNTITFVDSNRRFVTSS-----DDKSLR 395 (531)
Q Consensus 360 ------------------~~~~~~~~~h---------------------~~~I~~l~~sp~~~~l~s~s-----~Dg~I~ 395 (531)
|+....|.+. .+.=..|.|-.+|.+|++.. .-+.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 0001112211 11123589999999998832 237899
Q ss_pred EEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEE---cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCC
Q 009597 396 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 472 (531)
Q Consensus 396 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 472 (531)
|||.+ + .+.....+...--.+++|-|.|.++++.. .|+.|.+|.-..-..-.- .+.-......+..++|+.++
T Consensus 226 V~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f--~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 226 VYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF--VLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred Eeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc--ccCCcccccchheeeecCCC
Confidence 99987 3 33444455566677999999999998864 456788887543211111 11111222337789999999
Q ss_pred CEEEE---EeCCCcEEEEECCCCeEE--EEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEe
Q 009597 473 RFVMS---GDGEGKCWFWDWKSCKVF--RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 473 ~~l~s---gs~dg~I~iwd~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~i 529 (531)
..|++ ......|++|-+.+..-. ..+...... -+.|+|.....|..-..+|.+.+
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~--~~~W~p~~~~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA--LLMWDPVTEKTLHVLRESGQRLV 361 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEEEEEEEEeccccc--cccccCCCceeEEEEecCCcEEE
Confidence 99987 444455999988765432 223322222 27788854444444445555444
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=1.3e-06 Score=83.88 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=101.8
Q ss_pred EEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceec--eeeeecCCccccce
Q 009597 386 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN--KKKRFAGHIVAGYA 463 (531)
Q Consensus 386 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~--~~~~~~~~~~~~~v 463 (531)
++.+.+-.|-+-++.++...... ....|.++.|+..++++..|+.+|.|..+|++.+.+-. +...+. | ...+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~---sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h--~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ---SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H--DSSV 301 (425)
T ss_pred ecccccceeEEEEeecccccccc---cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-c--Ccch
Confidence 44555667888898887543332 56778999999999999999999999999999763221 112221 2 2446
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE---EEEeeccCCcEEE--EEEecCCCCEEEEEeCCCCEEee
Q 009597 464 CQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKV---FRTLKCHEGVCIG--CEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 464 ~~l~~sp-dg~~l~sgs~dg~I~iwd~~~~~~---~~~~~~h~~~V~~--v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
+++..-. ++++|++.+.+|+|.+||.+.-++ +.++.+|...-.- +-.++ ....++++|.|...|||
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIW 373 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEE
Confidence 7666655 788999999999999999997777 8888888653222 23345 56688889999999999
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=4.1e-05 Score=81.24 Aligned_cols=174 Identities=17% Similarity=0.194 Sum_probs=122.3
Q ss_pred cCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEcc
Q 009597 256 GNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNP 335 (531)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~ 335 (531)
..+-|.-.|.+...+. .+.. ++...|+.. .-+|.+++|||.||+|.|-.+-+.+...++..+.....+.++|
T Consensus 51 ~~~~GtH~g~v~~~~~-~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P 122 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTC-QGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP 122 (846)
T ss_pred eeeeccccceEEEEec-CCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc
Confidence 3444454555554432 2222 333444443 4469999999999999999999999999888899999999998
Q ss_pred C--CCCCcEEEEeeCCCeEEEEECCC--CceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC
Q 009597 336 D--DDKQNILLAGMSDKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 411 (531)
Q Consensus 336 ~--~~~~~~l~sg~~dg~I~iwd~~t--~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 411 (531)
+ ......+++|+..| +.++.-+- ......+....++|.++.|. |++++-++++| |++||+...+.+..+..+
T Consensus 123 d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 123 DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCC
Confidence 7 33446799999988 77765321 11111455567899999995 78888888888 999999999888877665
Q ss_pred CCC-----CccEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 009597 412 HMH-----SMPSISLHPNTNWLAAQSLDNQILIYSTR 443 (531)
Q Consensus 412 ~~~-----~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~ 443 (531)
+.. ....+.|.++.+ |+. +...+|+|..++
T Consensus 199 ~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 199 SQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIK 233 (846)
T ss_pred CCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEe
Confidence 522 234677776554 333 456678888887
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.23 E-value=0.00089 Score=64.60 Aligned_cols=180 Identities=16% Similarity=0.199 Sum_probs=113.3
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEe-cCCCEEEEEeCCCCEEEEEcCCCeEEEEeeC---C-CC
Q 009597 339 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-DSNRRFVTSSDDKSLRVWEFGIPVVIKYISE---P-HM 413 (531)
Q Consensus 339 ~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~s-p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~---~-~~ 413 (531)
.+.++++-...+.|+.|+..++.... +.... ...+++. ++ ..|+.+...+ +.++|..++........ . ..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCT
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCccc
Confidence 45677777788999999998876543 32222 7778888 55 5566666554 66669988855444432 1 34
Q ss_pred CCccEEEEeCCCCEEEEEEcC--------CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEE-EEeCCCcE
Q 009597 414 HSMPSISLHPNTNWLAAQSLD--------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEGKC 484 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~D--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-sgs~dg~I 484 (531)
.....+++.|+|++.++.... |.|..++.. +........ -...+.|+|+|+++.|+ +-+..+.|
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~------~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG------LGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE------ESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC------cccccceEECCcchheeeccccccee
Confidence 567889999999977776644 457777766 222111111 13356799999999776 45677889
Q ss_pred EEEECCC--C-----eEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 485 WFWDWKS--C-----KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 485 ~iwd~~~--~-----~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+.+++.. . +.+..+....+..-.+++.. ++++.++.-..+.|.++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEE
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEEC
Confidence 9998852 2 12222222223477899988 667766666677777764
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.14 E-value=2e-06 Score=88.71 Aligned_cols=202 Identities=14% Similarity=0.202 Sum_probs=125.4
Q ss_pred ceEEEEEccC--CCEEEEEecCCeEEEEeCCCCcEE-EEccCCCcceEEEEccCCCCCcEEEEee----CCCeEEEEECC
Q 009597 286 AVRDISFCND--GTKFLTASYDKNIKYWDTETGQVI-RTFSTGKIPYVVKLNPDDDKQNILLAGM----SDKKIVQWDMN 358 (531)
Q Consensus 286 ~V~~l~fspd--g~~l~s~s~Dg~I~vWd~~t~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~sg~----~dg~I~iwd~~ 358 (531)
.+.|++++-+ ...++.|..+|.|-+-.+....-- ..+..+....|.+..+..-+.+.|++|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3455554432 345778888899988877543322 4444555556655555554556777774 46789999998
Q ss_pred CC--ceeE--EEcc-cCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC-CCCEEEEEE
Q 009597 359 TK--EITQ--EYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQS 432 (531)
Q Consensus 359 t~--~~~~--~~~~-h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~s 432 (531)
++ .+.. .+.. -....++++|..+.+.+++|...+.+.++|++........ -....+..+.+.| .++++++-.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceeccc
Confidence 76 2221 2222 3345668999988999999999999999999853221111 1345677888889 788877755
Q ss_pred cCCeEEEEEc-CCcceeceeeeecCCccccceEEEEEcCC--CCEEEEEeCCCcEEEEECC
Q 009597 433 LDNQILIYST-RERFQLNKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWK 490 (531)
Q Consensus 433 ~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~l~sgs~dg~I~iwd~~ 490 (531)
||.|.+||. +.-+................+..++|+|. |...+..-..++|+.+|+.
T Consensus 216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 999999993 33211111000111111224667999995 4333333456789999975
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00016 Score=77.44 Aligned_cols=189 Identities=10% Similarity=0.203 Sum_probs=124.3
Q ss_pred CCcEEEEeeCCCeEEEEECCCCceeEEEcccCCC-eeEEEEecCCCEEEEEeCCC-----CEEEEEcCC------CeEE-
Q 009597 339 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDDK-----SLRVWEFGI------PVVI- 405 (531)
Q Consensus 339 ~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~-I~~l~~sp~~~~l~s~s~Dg-----~I~iwd~~~------~~~~- 405 (531)
++..++.|+.+|.|.+++- +.+.++.+..+... |..+....+..+|++.+.|+ .|+||+++. +.++
T Consensus 34 ~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 3467999999999998873 34555777777776 44444444446788877765 489999853 3333
Q ss_pred -EEeeC---C-CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC
Q 009597 406 -KYISE---P-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 480 (531)
Q Consensus 406 -~~~~~---~-~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 480 (531)
..+.. + ...++++++.+.+-+.+|+|-.+|.|..+.-.--.... .+.-..|.....|+.+.+..++..++-...
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg-sr~~~~~~~~~pITgL~~~~d~~s~lFv~T 191 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG-SRQDYSHRGKEPITGLALRSDGKSVLFVAT 191 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc-cceeeeccCCCCceeeEEecCCceeEEEEe
Confidence 11111 1 35678899999999999999999999998532111111 122333555677999999999887433444
Q ss_pred CCcEEEEECCCCeE-EEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 481 EGKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 481 dg~I~iwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
...|.+|.+....+ ...+..|...+.|..+++ ...-+++|+ +..|.+||
T Consensus 192 t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~-~e~l~fY~ 241 (933)
T KOG2114|consen 192 TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAG-SEFLYFYD 241 (933)
T ss_pred cceeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEec-CceEEEEc
Confidence 45788898874332 445677888899999998 444344444 33466654
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.07 E-value=0.0016 Score=69.42 Aligned_cols=256 Identities=14% Similarity=0.162 Sum_probs=150.0
Q ss_pred CCCceeeeeecccCeeeEEecCccC------ce--EEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc---e
Q 009597 261 EKGEHVEDKSTFHGKCMRTYMGHSK------AV--RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP---Y 329 (531)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~~l~gH~~------~V--~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~---~ 329 (531)
..++.+...+..+|+.+..+.-... .+ ..+... ++..++.++.++.|.-+|.++|+.+..+...... .
T Consensus 68 ~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~ 146 (488)
T cd00216 68 TSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGY 146 (488)
T ss_pred CCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcce
Confidence 3346667777777777766654322 11 011121 2256778888999999999999999887654321 1
Q ss_pred EEEEccCCCCCcEEEEee---------CCCeEEEEECCCCceeEEEcccCC--------------------Ce-eEEEEe
Q 009597 330 VVKLNPDDDKQNILLAGM---------SDKKIVQWDMNTKEITQEYDQHLG--------------------AV-NTITFV 379 (531)
Q Consensus 330 ~~~~~~~~~~~~~l~sg~---------~dg~I~iwd~~t~~~~~~~~~h~~--------------------~I-~~l~~s 379 (531)
.+...+.-.. .+++.++ .++.|..+|..+++.+-.+..... .| ...++.
T Consensus 147 ~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d 225 (488)
T cd00216 147 TMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD 225 (488)
T ss_pred EecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe
Confidence 1111111111 3455554 368899999999998887754211 11 123444
Q ss_pred cCCCEEEEEeCCC------------------CEEEEEcCCCeEEEEeeCCCCC-----CccEEEEe----CCCC---EEE
Q 009597 380 DSNRRFVTSSDDK------------------SLRVWEFGIPVVIKYISEPHMH-----SMPSISLH----PNTN---WLA 429 (531)
Q Consensus 380 p~~~~l~s~s~Dg------------------~I~iwd~~~~~~~~~~~~~~~~-----~v~~v~~s----p~~~---~l~ 429 (531)
+.+.+++.++.++ .|.-+|..+++..-.....+.. ......+. -++. .++
T Consensus 226 ~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~ 305 (488)
T cd00216 226 PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIV 305 (488)
T ss_pred CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEE
Confidence 5567777777665 6999999999877665432110 11111111 1233 677
Q ss_pred EEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE------------------eCCCcEEEEECCC
Q 009597 430 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG------------------DGEGKCWFWDWKS 491 (531)
Q Consensus 430 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg------------------s~dg~I~iwd~~~ 491 (531)
+++.+|.+..+|..++..+-....... .+..+| ..++.+ ..+|.|.-.|..+
T Consensus 306 ~g~~~G~l~ald~~tG~~~W~~~~~~~--------~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 306 HAPKNGFFYVLDRTTGKLISARPEVEQ--------PMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EECCCceEEEEECCCCcEeeEeEeecc--------ccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 888999999999999877654332111 123333 222221 2467888889999
Q ss_pred CeEEEEeeccC--------CcE--EEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 492 CKVFRTLKCHE--------GVC--IGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 492 ~~~~~~~~~h~--------~~V--~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
++.+-+..... .+. ..+.. .+.+|+.++.||.|+.+|
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFD 422 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEE
Confidence 98877665331 111 11222 345788888899887765
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.06 E-value=0.0064 Score=60.08 Aligned_cols=257 Identities=16% Similarity=0.152 Sum_probs=150.9
Q ss_pred ceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEec----------CCeEEEEeCCCCcEEEEccCCCcceE---
Q 009597 264 EHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTGKIPYV--- 330 (531)
Q Consensus 264 ~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~----------Dg~I~vWd~~t~~~i~~~~~~~~~~~--- 330 (531)
+.+.+.+...++.+..+..-- .-.+..+|+++.+++++. .-.|.+||..+......+.....+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 357777777888877775432 333667999998887542 33699999999988876654433111
Q ss_pred -----EEEccCCCCCcEEEE--eeCCCeEEEEECCCCceeEEEcccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcC-C
Q 009597 331 -----VKLNPDDDKQNILLA--GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFG-I 401 (531)
Q Consensus 331 -----~~~~~~~~~~~~l~s--g~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~-~ 401 (531)
..++.+ +.++++ .+-...|.|.|+..++.+.++... + |...-| .++.|.+-|.||++.-..+. .
T Consensus 95 ~~~~~~~ls~d---gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSAD---GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TT---SSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccC---CcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCC
Confidence 222221 122222 233456777777777777776532 1 222223 23568899999999998887 3
Q ss_pred CeEEEE---eeCCCCCC-ccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecC--------CccccceEEEEEc
Q 009597 402 PVVIKY---ISEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG--------HIVAGYACQVNFS 469 (531)
Q Consensus 402 ~~~~~~---~~~~~~~~-v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~--------~~~~~~v~~l~~s 469 (531)
++.... +......+ +..-++...+..++-.+..|.|+-.|+...... ....+.- .-..+....++++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-~~~~~~~~t~~e~~~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK-FGKPWSLLTDAEKADGWRPGGWQLIAYH 246 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE-EEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc-ccCcccccCccccccCcCCcceeeeeec
Confidence 433222 22222222 234445555666666789999999888764321 1111110 0001112237888
Q ss_pred CCCCEEEEEe---CCC-------cEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEe-CCCCEEeeC
Q 009597 470 PDGRFVMSGD---GEG-------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 531 (531)
Q Consensus 470 pdg~~l~sgs---~dg-------~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s-~Dg~I~iWD 531 (531)
+....|++-- .+| .|+++|+.+++.+..+.. ...+.++..+.++..+|++.+ .++.|.+||
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 7665555432 122 488999999999999984 235778999986666776654 578899987
No 321
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.03 E-value=0.00096 Score=67.16 Aligned_cols=216 Identities=15% Similarity=0.174 Sum_probs=124.6
Q ss_pred CeEEEEeCCCCcEEEEccCCC--cceEEEEccCCC----CCcEEEEeeC----------CCeEEEEECCCC----ceeEE
Q 009597 306 KNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDD----KQNILLAGMS----------DKKIVQWDMNTK----EITQE 365 (531)
Q Consensus 306 g~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~----~~~~l~sg~~----------dg~I~iwd~~t~----~~~~~ 365 (531)
..|+|.|..+.+.+.++.... .+.+++...... ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368888888888777665433 333333322221 2467777753 289999999874 12221
Q ss_pred E--cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCe-EEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEc
Q 009597 366 Y--DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 442 (531)
Q Consensus 366 ~--~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~ 442 (531)
+ ....++|.+|+-. ++ +|+++. .+.|.+|++.... ....-.. ...+..++....++++++|..-..|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~--~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY--DSPFYITSLSVFKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhee--cceEEEEEEeccccEEEEEEcccCEEEEEE
Confidence 1 2346889999877 34 455444 4789999998877 4443332 233344444445779999999888888755
Q ss_pred CC-cceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------C--eEEEEeeccC-CcEEEE---
Q 009597 443 RE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-------C--KVFRTLKCHE-GVCIGC--- 508 (531)
Q Consensus 443 ~~-~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~-------~--~~~~~~~~h~-~~V~~v--- 508 (531)
+. ...+..+. ......+++++.|-+++..+++++.+|.|.++.... + ++......|- ..|+++
T Consensus 157 ~~~~~~l~~va---~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 157 DEENNKLILVA---RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp ETTTE-EEEEE---EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred EccCCEEEEEE---ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 43 22222222 222245577888886667999999999999997652 2 3333333343 356666
Q ss_pred EEecC--CCC-----EEEEEeCCCCEEe
Q 009597 509 EWHPL--EQS-----KVATCGWDGLIKY 529 (531)
Q Consensus 509 ~~~p~--~~~-----~l~t~s~Dg~I~i 529 (531)
.+.|. ... .++-++.+|.|.+
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEE
Confidence 44441 122 4777888998863
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.03 E-value=1.7e-06 Score=89.26 Aligned_cols=185 Identities=15% Similarity=0.280 Sum_probs=124.8
Q ss_pred CcEEEEeeCCCeEEEEECCCCce--eEEEcccCCCeeEEEEec-CCCEEEEEe----CCCCEEEEEcCCC--eE--EEEe
Q 009597 340 QNILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVD-SNRRFVTSS----DDKSLRVWEFGIP--VV--IKYI 408 (531)
Q Consensus 340 ~~~l~sg~~dg~I~iwd~~t~~~--~~~~~~h~~~I~~l~~sp-~~~~l~s~s----~Dg~I~iwd~~~~--~~--~~~~ 408 (531)
..++++|..+|.|.+-.++...- -....+|...+++++|++ |.+.|+.|- .|..+.|||+.+. .+ ...+
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 46899999999999988865432 233466788999999998 445566653 3567999999775 11 1122
Q ss_pred eCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 009597 409 SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFW 487 (531)
Q Consensus 409 ~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~iw 487 (531)
.........+++|..+.+++++|.....+.++|++..... ...+. ...+..+..+| .+.|+++-. ||.|-+|
T Consensus 150 s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~--~~svn----Tk~vqG~tVdp~~~nY~cs~~-dg~iAiw 222 (783)
T KOG1008|consen 150 SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS--VSSVN----TKYVQGITVDPFSPNYFCSNS-DGDIAIW 222 (783)
T ss_pred ccccccCccccccccCcchhhcccccchhhhhhhhhhhhh--hhhhh----hhhcccceecCCCCCceeccc-cCceeec
Confidence 2223445668999989999999999999999999843211 11111 12344467788 677886665 9999999
Q ss_pred E-CCCC-eEEEEeeccC----CcEEEEEEecCCCCEEEEEeCC-CCEEeeC
Q 009597 488 D-WKSC-KVFRTLKCHE----GVCIGCEWHPLEQSKVATCGWD-GLIKYWD 531 (531)
Q Consensus 488 d-~~~~-~~~~~~~~h~----~~V~~v~~~p~~~~~l~t~s~D-g~I~iWD 531 (531)
| .+.- .++..+.... ..+..++|.|....+++++..| ++|+++|
T Consensus 223 D~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 223 DTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred cchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 9 4432 2333332111 2489999999877888888876 4677765
No 323
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.02 E-value=0.00041 Score=76.19 Aligned_cols=144 Identities=15% Similarity=0.236 Sum_probs=102.8
Q ss_pred CCEEEEE-ecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCC----CCcEEEEeeCCCeEEEEECCCCc--eeEE-E-
Q 009597 296 GTKFLTA-SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD----KQNILLAGMSDKKIVQWDMNTKE--ITQE-Y- 366 (531)
Q Consensus 296 g~~l~s~-s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~----~~~~l~sg~~dg~I~iwd~~t~~--~~~~-~- 366 (531)
.++|+.- .....|+-.|++.|+.+..+..+....+..+.+... ...-.+.|-.+..|..||.+-.. ++.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 445789999999999999999888777777877532 12347788889999999998532 3321 1
Q ss_pred -cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEc
Q 009597 367 -DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 442 (531)
Q Consensus 367 -~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~ 442 (531)
-......+|++-..+| +||+|+.+|.||+||- .+..-+....+-..+|..|..+.+|+||++.+ +..|.++++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1133456777766555 7999999999999993 44444444445678999999999999988766 556666664
No 324
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.01 E-value=3.6e-05 Score=73.06 Aligned_cols=190 Identities=15% Similarity=0.238 Sum_probs=120.8
Q ss_pred CCcEEEEeeCCCeEEEEECCCCc-----eeEEEcccC------------CCeeEEEEecCCC--EEEEEeCCCCEEEEEc
Q 009597 339 KQNILLAGMSDKKIVQWDMNTKE-----ITQEYDQHL------------GAVNTITFVDSNR--RFVTSSDDKSLRVWEF 399 (531)
Q Consensus 339 ~~~~l~sg~~dg~I~iwd~~t~~-----~~~~~~~h~------------~~I~~l~~sp~~~--~l~s~s~Dg~I~iwd~ 399 (531)
.+.++++|...|.|.+|.-.... ...+++.|. ..|+.|.|..++. .|+..+.|++|++|-+
T Consensus 37 tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKi 116 (460)
T COG5170 37 TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKI 116 (460)
T ss_pred ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeee
Confidence 45789999999999999754322 223344443 3578888887554 5888889999999987
Q ss_pred CCCe------------------------------------------EEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeE
Q 009597 400 GIPV------------------------------------------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 437 (531)
Q Consensus 400 ~~~~------------------------------------------~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I 437 (531)
.... +.+.....|..-|.++.|+.+...+++ +.|-.|
T Consensus 117 yeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lS-aDdLrI 195 (460)
T COG5170 117 YEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLS-ADDLRI 195 (460)
T ss_pred ecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeee-ccceee
Confidence 4210 001111235556778888887776665 557789
Q ss_pred EEEEcCCcceeceeeeecCCc---cccceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEE------EE----------
Q 009597 438 LIYSTRERFQLNKKKRFAGHI---VAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCKVF------RT---------- 497 (531)
Q Consensus 438 ~iwd~~~~~~~~~~~~~~~~~---~~~~v~~l~~spd-g~~l~sgs~dg~I~iwd~~~~~~~------~~---------- 497 (531)
.+|++.-...--.+...+.|. ....|++..|+|. ...+.-.+..|.|++-|++...+. ..
T Consensus 196 NLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~f 275 (460)
T COG5170 196 NLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDF 275 (460)
T ss_pred eeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchh
Confidence 999876422111112222222 2234677889985 345666778899999999843221 11
Q ss_pred eeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 498 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 498 ~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+..-...|..+.|++ +++++++-+. -+|+|||
T Consensus 276 f~eivsSISD~kFs~-ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 276 FEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWD 307 (460)
T ss_pred HHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEe
Confidence 111224678899999 8888877653 5799997
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.96 E-value=0.00079 Score=71.47 Aligned_cols=201 Identities=11% Similarity=0.110 Sum_probs=124.2
Q ss_pred EccCCCEEE-EEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeC----CCeEEEEECCCCceeEEE
Q 009597 292 FCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS----DKKIVQWDMNTKEITQEY 366 (531)
Q Consensus 292 fspdg~~l~-s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~----dg~I~iwd~~t~~~~~~~ 366 (531)
+.|||+.+. +.-+.+.+.+.|.++.+...++..+..+..+.+.+++ .++++.+. ..++...+......+..+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdG---k~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDG---KYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCC---CEEEEeccCcccCcceeeeccccCceEEEE
Confidence 456776543 3444577888899988888888777777677777733 34544442 123333333222222222
Q ss_pred cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC-----CeEEEEeeCCCCCCccEEEEeCCCCEEEEEE-cCCeEEEE
Q 009597 367 DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-----PVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIY 440 (531)
Q Consensus 367 ~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~-----~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s-~Dg~I~iw 440 (531)
... .+ -.+.++|++... .++.|.+.|.++ ...+.++. -......+.++|+|+++++++ .+++|.|+
T Consensus 277 ni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 277 NIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred chH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 110 00 133457776665 367899999998 45666665 456788999999999987765 48899999
Q ss_pred EcCCcceec-----eeeeecC-CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CeEEEEeeccCC
Q 009597 441 STRERFQLN-----KKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHEG 503 (531)
Q Consensus 441 d~~~~~~~~-----~~~~~~~-~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~----------~~~~~~~~~h~~ 503 (531)
|+.....+- ......+ -.........+|.++|....+-.-|..|..|++.. ...+..+..|-.
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~ 427 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ 427 (635)
T ss_pred EChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc
Confidence 998744210 0000000 00112234588999999888888999999999876 345565655544
No 326
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.95 E-value=0.0092 Score=58.99 Aligned_cols=231 Identities=13% Similarity=0.097 Sum_probs=144.0
Q ss_pred CCCCCceeeeeecccCeeeEEe--cC-ccC----ceEEEEEccCCCEEEEE--ecCCeEEEEeCCCCcEEEEccCCCcce
Q 009597 259 GGEKGEHVEDKSTFHGKCMRTY--MG-HSK----AVRDISFCNDGTKFLTA--SYDKNIKYWDTETGQVIRTFSTGKIPY 329 (531)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~~l--~g-H~~----~V~~l~fspdg~~l~s~--s~Dg~I~vWd~~t~~~i~~~~~~~~~~ 329 (531)
.|.....|.+|+..+......+ .+ |.. ....++++.||++++.. +---.|.|-|+..++.+..+....
T Consensus 62 rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--- 138 (342)
T PF06433_consen 62 RGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--- 138 (342)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS---
T ss_pred cccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC---
Confidence 3555667889988887666643 22 122 23446788899987765 445679999999999998886544
Q ss_pred EEEEccCCCCCcEEEEeeCCCeEEEEECC-CCceeEEE----cccCCC-eeEEEEecCCCEEEEEeCCCCEEEEEcCCCe
Q 009597 330 VVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEY----DQHLGA-VNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 403 (531)
Q Consensus 330 ~~~~~~~~~~~~~l~sg~~dg~I~iwd~~-t~~~~~~~----~~h~~~-I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~ 403 (531)
|..+.|..+ .-|.+-|.||.+....+. .|+..+.. .....+ +..-.+...+..++-.+..|.|+--|+....
T Consensus 139 C~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 139 CWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred EEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 444445444 348888999999999887 45554332 111222 2344555566677778899999998887653
Q ss_pred EE--EEeeCC---------CCCCccEEEEeCCCCEEEEEEcC----------CeEEEEEcCCcceeceeeeecCCccccc
Q 009597 404 VI--KYISEP---------HMHSMPSISLHPNTNWLAAQSLD----------NQILIYSTRERFQLNKKKRFAGHIVAGY 462 (531)
Q Consensus 404 ~~--~~~~~~---------~~~~v~~v~~sp~~~~l~s~s~D----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~ 462 (531)
.. ..+... ..+...-+++++..+.|.+-... ..|.+||+.+++++.++.. ...
T Consensus 217 ~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l------~~~ 290 (342)
T PF06433_consen 217 AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL------EHP 290 (342)
T ss_dssp EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE------EEE
T ss_pred ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC------CCc
Confidence 22 222110 11235568888866666553322 1688889999877755442 122
Q ss_pred eEEEEEcCCCC-EEEEE-eCCCcEEEEECCCCeEEEEeec
Q 009597 463 ACQVNFSPDGR-FVMSG-DGEGKCWFWDWKSCKVFRTLKC 500 (531)
Q Consensus 463 v~~l~~spdg~-~l~sg-s~dg~I~iwd~~~~~~~~~~~~ 500 (531)
+.+|..+.+.+ +|++. ..++.|.+||..+++.++++..
T Consensus 291 ~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 291 IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 55688888766 55444 4678999999999999998874
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=0.007 Score=56.72 Aligned_cols=142 Identities=11% Similarity=-0.037 Sum_probs=97.4
Q ss_pred CCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeE
Q 009597 296 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 375 (531)
Q Consensus 296 g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~ 375 (531)
.++++.||..+.++--|..+|+.+..-..+....+..+.. +++++.|+..|.+++.+..+|+....+..-..--..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv----gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV----GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE----CCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 4578889999999999999999887765555444433332 256999999999999999999888777543222223
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEc
Q 009597 376 ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 442 (531)
Q Consensus 376 l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~ 442 (531)
....+++..+..++.|++.+..|.++..++....- ......+-++.|-...|..+...|.+.--..
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEeccc-CCceeccceecCCCceEEEEeccceEEEEcc
Confidence 34566899999999999999999998877766432 2222233344553334445555565544443
No 328
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.024 Score=58.45 Aligned_cols=248 Identities=15% Similarity=0.134 Sum_probs=153.7
Q ss_pred eeeeecccCeeeEEecCccCceEEEEEccCCCEEEEE-ecCCeEEEEeCCCCcEEEEccCC-CcceEEEEccCCCCCcEE
Q 009597 266 VEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNIL 343 (531)
Q Consensus 266 i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~-s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l 343 (531)
+.+....+.+....+.-+. ....+...+++..+... .....+.+.+............+ ..+..+.+.+. ....+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~--~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPA--GNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCC--CCeEE
Confidence 3444444444444444333 56778888888544433 22235666665522222222222 22334444443 33567
Q ss_pred EEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeC---CCCEEEEEcCCCeEEEEeeCCCCCCccEEE
Q 009597 344 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD---DKSLRVWEFGIPVVIKYISEPHMHSMPSIS 420 (531)
Q Consensus 344 ~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~ 420 (531)
+....+..|.+.|..+.........-. ....+++.++++.+..+.. ++++.+.|-.+...+..+..+. .+ ..++
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a 166 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVA 166 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEE
Confidence 777778999999988877777665433 5678999999987776655 6889999999988888755432 33 8999
Q ss_pred EeCCCCEEEEEE-cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEE
Q 009597 421 LHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFR 496 (531)
Q Consensus 421 ~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~ 496 (531)
+.|+|..+++.. .++.|.++|........ -.....-........+.++|+|.++.+.... +.+.+.|..++....
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 999999666555 78899999976653331 1100011112334558999999977765543 589999999888776
Q ss_pred Ee-eccCCcEEEEEEecCCCCEEEEE
Q 009597 497 TL-KCHEGVCIGCEWHPLEQSKVATC 521 (531)
Q Consensus 497 ~~-~~h~~~V~~v~~~p~~~~~l~t~ 521 (531)
.. ..-......+..+| .+..+...
T Consensus 246 ~~~~~~~~~~~~v~~~p-~g~~~yv~ 270 (381)
T COG3391 246 TDLPVGSGAPRGVAVDP-AGKAAYVA 270 (381)
T ss_pred eccccccCCCCceeECC-CCCEEEEE
Confidence 52 22111345678888 45544444
No 329
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0079 Score=62.03 Aligned_cols=219 Identities=16% Similarity=0.185 Sum_probs=154.6
Q ss_pred ceEEEEEccCCCE-EEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEee--CCCeEEEEECCCCce
Q 009597 286 AVRDISFCNDGTK-FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEI 362 (531)
Q Consensus 286 ~V~~l~fspdg~~-l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~--~dg~I~iwd~~t~~~ 362 (531)
.-..+++++.+.. +++...+..|.+.|+.+..++..+..+..+..+.+.+... .+.++-. .++.+.+.|..+...
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeE
Confidence 3456788888774 4555556899999999999999988888888888887654 4555555 479999999999998
Q ss_pred eEEEcccCCCeeEEEEecCCCEEEEEe-CCCCEEEEEcCCCeEEEEee----CCCCCCccEEEEeCCCCEEEEEEcC---
Q 009597 363 TQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVVIKYIS----EPHMHSMPSISLHPNTNWLAAQSLD--- 434 (531)
Q Consensus 363 ~~~~~~h~~~I~~l~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~----~~~~~~v~~v~~sp~~~~l~s~s~D--- 434 (531)
+.....-..+ ..+++.|++..++.+. .++.|.+.|........ -. .........+.++|++.++.+....
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 8886554445 8999999999766655 78899999977665553 11 1123345678999999976665544
Q ss_pred CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeeccCC---cEEEEEE
Q 009597 435 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHEG---VCIGCEW 510 (531)
Q Consensus 435 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~~~h~~---~V~~v~~ 510 (531)
+.+.+.|..++........... . ....+.++|+|.++.+... .+.+.+.|..+......+..... .+..+++
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~---~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~ 306 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGS---G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAI 306 (381)
T ss_pred ceEEEEeCCCceEEEecccccc---C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccc
Confidence 4899999887654432111111 0 2334789999999988854 48899999998888776654332 3445555
Q ss_pred ec
Q 009597 511 HP 512 (531)
Q Consensus 511 ~p 512 (531)
.+
T Consensus 307 ~~ 308 (381)
T COG3391 307 SP 308 (381)
T ss_pred ee
Confidence 54
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.93 E-value=0.0032 Score=67.02 Aligned_cols=144 Identities=12% Similarity=0.126 Sum_probs=90.3
Q ss_pred ecCCCEEEEE-eCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc------------------------
Q 009597 379 VDSNRRFVTS-SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL------------------------ 433 (531)
Q Consensus 379 sp~~~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~------------------------ 433 (531)
.|+|+.+... -..+.+.+.|..+.+....+.- ......+.++|+|+++++.+.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 3455544322 2245677778877766666543 235567788888888877751
Q ss_pred ----------------CCeEEEEEcCC----cceeceeeeecCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 009597 434 ----------------DNQILIYSTRE----RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSC 492 (531)
Q Consensus 434 ----------------Dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~ 492 (531)
++.|.+.|.++ +..+... +. .......+.++|||+++++++ .+.+|.|.|+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~y--IP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRY--VP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEE--EE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 23456666554 1111111 10 122344589999999988766 5889999999875
Q ss_pred e------------EEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 493 K------------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 493 ~------------~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
+ .+.....-.++ ...+|.+ .+....|.--|..|..||
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg-~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGP-LHTAFDG-RGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCc-ceEEECC-CCCEEEeEeecceeEEEe
Confidence 5 24444433334 5678888 566788888899999997
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.92 E-value=0.00048 Score=71.45 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=63.6
Q ss_pred ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 009597 368 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444 (531)
Q Consensus 368 ~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~ 444 (531)
.....|.|++++|+...|+.|+.||+|.+||...+...... ..-..+.++|||+|..|++|+..|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee---ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 35678999999999999999999999999999877544321 345678999999999999999999999999764
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.00048 Score=73.53 Aligned_cols=256 Identities=11% Similarity=0.043 Sum_probs=144.7
Q ss_pred HHHHHHhhhhccCCCCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEE---
Q 009597 245 AEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--- 321 (531)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~--- 321 (531)
+..++|-+++-.++.|.+-+.+.+|...+.+....-..|..+|..+.||++|..|+|+..-|.|.+|....-..+..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 45689999999999999999999999988888888888999999999999999999999999999998763222221
Q ss_pred --ccCCCcceEEEEccCCCCC-----cEEEEeeCCCeEE-EEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCC
Q 009597 322 --FSTGKIPYVVKLNPDDDKQ-----NILLAGMSDKKIV-QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393 (531)
Q Consensus 322 --~~~~~~~~~~~~~~~~~~~-----~~l~sg~~dg~I~-iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~ 393 (531)
...+.....++|....+.. ...++.+.+.-+- .++.+.....+.. .|.+ .|+|..|+.++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-~ksg-------v~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-EKSG-------VPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-cccC-------CCCCcEEEEEcCCce
Confidence 1122222333333222211 1122223232222 3332211111111 1111 367888888899998
Q ss_pred EEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC-c---------------ce----------
Q 009597 394 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-R---------------FQ---------- 447 (531)
Q Consensus 394 I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~-~---------------~~---------- 447 (531)
|+..|-..... ....... ...+-|.+...-+++...+-++.+|-... + .+
T Consensus 214 Vyyvdq~g~~~-~V~k~dS---~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss 289 (1416)
T KOG3617|consen 214 VYYVDQNGRQR-TVHKLDS---EVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS 289 (1416)
T ss_pred EEEEcCCCcEE-EEEEccc---hHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc
Confidence 88877543321 1111100 01112222222222222222222221110 0 00
Q ss_pred -eceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC-CC------CeEEEEee---ccCCcEEEEEEec
Q 009597 448 -LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW-KS------CKVFRTLK---CHEGVCIGCEWHP 512 (531)
Q Consensus 448 -~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~-~~------~~~~~~~~---~h~~~V~~v~~~p 512 (531)
+.+...-.|......++|++++..+..|+.|...|.+.+|-- .. +.-...+. ...+.|..+.|.|
T Consensus 290 GvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~ 365 (1416)
T KOG3617|consen 290 GVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP 365 (1416)
T ss_pred ccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc
Confidence 000011122233456888999999999999999999999942 22 12233333 2346799999998
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.00037 Score=72.24 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=78.6
Q ss_pred eEEEEec-CCCEEEEE----eCCCC----EEEEEcCCC--eEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEc
Q 009597 374 NTITFVD-SNRRFVTS----SDDKS----LRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 442 (531)
Q Consensus 374 ~~l~~sp-~~~~l~s~----s~Dg~----I~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~ 442 (531)
.++.|+- +...+.+. +.+|. -++|++... +.+.....+....+.+++++|+...|+.|+.||.|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 5566665 33344432 33443 346666544 3334444567889999999999999999999999999998
Q ss_pred CCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009597 443 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 490 (531)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 490 (531)
..+..... .. .-.+..++|+|+|.++++|+..|.+.+||+.
T Consensus 289 ~~~~t~~~-----ka--~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 289 TRGVTLLA-----KA--EFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCCeeeee-----ee--cccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 76533211 11 2336669999999999999999999999975
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.0029 Score=65.80 Aligned_cols=228 Identities=16% Similarity=0.214 Sum_probs=137.8
Q ss_pred CeeeEEecCccCceEEEEEccCCCEEEEEe---cC-CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC
Q 009597 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTAS---YD-KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 349 (531)
Q Consensus 274 ~~~~~~l~gH~~~V~~l~fspdg~~l~s~s---~D-g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 349 (531)
+...+.+..-...+..-+|+|++..++-.+ .. ..+.++++.+++.............-.|++++ ..++++...|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG--~~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDG--SKLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCC--CEEEEEECCC
Confidence 556666666677888889999988765442 22 36999999998877766655555566677765 4678888888
Q ss_pred Ce--EEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeC-CCC--EEEEEcCCCeEEEEeeCCCCCCccEEEEeCC
Q 009597 350 KK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPN 424 (531)
Q Consensus 350 g~--I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-Dg~--I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~ 424 (531)
|. |.++|+.++...+ +..-.+.-..-.|+|+|+.++-.++ .|. |.+++........... ....-..-.|+|+
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~Spd 336 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPD 336 (425)
T ss_pred CCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCC
Confidence 75 5556777766443 4433344446689999999887665 444 6666666665533332 2222237789999
Q ss_pred CCEEEEEEcC-Ce--EEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEee
Q 009597 425 TNWLAAQSLD-NQ--ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWKSCKVFRTLK 499 (531)
Q Consensus 425 ~~~l~s~s~D-g~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg--~I~iwd~~~~~~~~~~~ 499 (531)
|++|+..+.. |. |.++|+.++..+ +.+... .....-.|.++|+.++..+..+ .+..--..+++....+.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~---~~lt~~---~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKI---RILTST---YLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcE---EEcccc---ccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 9999987754 44 666666554321 112111 1122256888888887655433 22222223444444444
Q ss_pred ccCCcEEEEEEec
Q 009597 500 CHEGVCIGCEWHP 512 (531)
Q Consensus 500 ~h~~~V~~v~~~p 512 (531)
.-.+.+..-+|.|
T Consensus 411 ~~~~~~~~p~w~~ 423 (425)
T COG0823 411 LADGDVRVPAWSP 423 (425)
T ss_pred ccCcceecccccC
Confidence 4444555555554
No 335
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.86 E-value=0.0067 Score=59.24 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=123.6
Q ss_pred CcEEEEeeCCC-eEEEEECCCCceeEEEcccCCCe--eEEEEecCCCEEEEEeC-----CCCEEEEEcC-CCeEEEEeeC
Q 009597 340 QNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAV--NTITFVDSNRRFVTSSD-----DKSLRVWEFG-IPVVIKYISE 410 (531)
Q Consensus 340 ~~~l~sg~~dg-~I~iwd~~t~~~~~~~~~h~~~I--~~l~~sp~~~~l~s~s~-----Dg~I~iwd~~-~~~~~~~~~~ 410 (531)
...++.+-.-| ...+||..+++..+.+....+.- -.-.|+++|++|++.-. .|.|-|||.. ....+..+..
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s 96 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS 96 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence 35566666655 46789999999888775544332 24689999999998644 5789999998 4555555543
Q ss_pred CCCCCccEEEEeCCCCEEEEEE------------------cCCeEEEEEcCCcceeceeeee-cCCccccceEEEEEcCC
Q 009597 411 PHMHSMPSISLHPNTNWLAAQS------------------LDNQILIYSTRERFQLNKKKRF-AGHIVAGYACQVNFSPD 471 (531)
Q Consensus 411 ~~~~~v~~v~~sp~~~~l~s~s------------------~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~v~~l~~spd 471 (531)
+.-.-..+.+.|+++.|+++. ++..+.+.|..++..+.+.... ..| .-.+..+++.++
T Consensus 97 -~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~--~lSiRHLa~~~~ 173 (305)
T PF07433_consen 97 -HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH--QLSIRHLAVDGD 173 (305)
T ss_pred -CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc--ccceeeEEecCC
Confidence 444566788999997777754 3456677777777666543322 223 344888999999
Q ss_pred CCEEEEEeCCCc-------EEEEECCCCeEEEEeec-------cCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 472 GRFVMSGDGEGK-------CWFWDWKSCKVFRTLKC-------HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 472 g~~l~sgs~dg~-------I~iwd~~~~~~~~~~~~-------h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
|..++..-..|. |.+++. +..+..+.. -.+-|-+|++++++..+.+|+=.-|.+.+||
T Consensus 174 G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 174 GTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred CcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 987776654442 444443 332333322 2356889999994444556777788899996
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.86 E-value=0.0086 Score=57.41 Aligned_cols=204 Identities=11% Similarity=0.150 Sum_probs=110.0
Q ss_pred EEecCccCceEEEEEccCCC-EEEEEecCCeEEEEeCCCCcEEEEccCCC--cceEEEEccCCCCCcEEEEeeCCCeEEE
Q 009597 278 RTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQ 354 (531)
Q Consensus 278 ~~l~gH~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~i 354 (531)
+.+.+-...|..|.|+|+.. ++++....+.|...+. +|+.++.+.... ....+.+.- ++.++++--.++.+.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g---~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG---NGRYVLSEERDQRLYI 90 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S---TTEEEEEETTTTEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC---CCEEEEEEcCCCcEEE
Confidence 46667777899999999754 5666677788888886 588888876543 233444432 2245555556899999
Q ss_pred EECCCCc------eeEEEc-----ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC---CeEEEEee-------CCCC
Q 009597 355 WDMNTKE------ITQEYD-----QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---PVVIKYIS-------EPHM 413 (531)
Q Consensus 355 wd~~t~~------~~~~~~-----~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~---~~~~~~~~-------~~~~ 413 (531)
+++.... ....+. .+...+-.|+|.+.++.|+.+-...-..||.+.. ...+.... ....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 9883321 112221 2445689999999988888888877788887754 22221111 1244
Q ss_pred CCccEEEEeCC-CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCc----cccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 009597 414 HSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFW 487 (531)
Q Consensus 414 ~~v~~v~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~sgs~dg~I~iw 487 (531)
..+.+++++|. +++++....+..|.++|. ++..+.......+.. .-...-.|+|.++|++.+++ +-+..++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 56889999995 566666666778888884 444333222222110 01124558999999766554 44444443
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.84 E-value=0.012 Score=62.77 Aligned_cols=233 Identities=14% Similarity=0.173 Sum_probs=135.5
Q ss_pred CCCCceeeeeecccCeeeEEecCccCc--eEEEEEcc--CCCEEEEEe---------cCCeEEEEeCCCCcEEEEccCCC
Q 009597 260 GEKGEHVEDKSTFHGKCMRTYMGHSKA--VRDISFCN--DGTKFLTAS---------YDKNIKYWDTETGQVIRTFSTGK 326 (531)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~~l~gH~~~--V~~l~fsp--dg~~l~s~s---------~Dg~I~vWd~~t~~~i~~~~~~~ 326 (531)
+..++.+...+..+|+.+..+...... -..+.-+| .+..++.++ .++.|..+|..+|+.+..+....
T Consensus 116 ~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~ 195 (488)
T cd00216 116 GTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTE 195 (488)
T ss_pred ecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccC
Confidence 345677888888888888777643321 00111122 123455543 46889999999999988875532
Q ss_pred cc-eEE---------EE--------ccC-CCCCcEEEEeeCCC------------------eEEEEECCCCceeEEEccc
Q 009597 327 IP-YVV---------KL--------NPD-DDKQNILLAGMSDK------------------KIVQWDMNTKEITQEYDQH 369 (531)
Q Consensus 327 ~~-~~~---------~~--------~~~-~~~~~~l~sg~~dg------------------~I~iwd~~t~~~~~~~~~h 369 (531)
.. ... .. .+. .....+++.++.++ .|.-+|..+++.+-.+..-
T Consensus 196 ~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~ 275 (488)
T cd00216 196 PDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT 275 (488)
T ss_pred CCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC
Confidence 10 000 00 000 11235677777665 7999999999998877532
Q ss_pred CCCe------eEEEEe----cCCC---EEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEE-----
Q 009597 370 LGAV------NTITFV----DSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ----- 431 (531)
Q Consensus 370 ~~~I------~~l~~s----p~~~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~----- 431 (531)
...+ ....+. -++. .++.++.+|.+...|.++++.+-..... ...++.+| ..++.+
T Consensus 276 ~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~ 349 (488)
T cd00216 276 PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIP 349 (488)
T ss_pred CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEcccccc
Confidence 1111 111111 1233 5778888999999999999877655321 11122333 222222
Q ss_pred -------------EcCCeEEEEEcCCcceeceeeeecCCc-----cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 009597 432 -------------SLDNQILIYSTRERFQLNKKKRFAGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 493 (531)
Q Consensus 432 -------------s~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 493 (531)
..+|.|.-+|+.+++.+-......... .......+. ..+.+|++++.||.|+.+|..+|+
T Consensus 350 ~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 350 LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCc
Confidence 235778888888876654433210000 000001122 246788899999999999999999
Q ss_pred EEEEeec
Q 009597 494 VFRTLKC 500 (531)
Q Consensus 494 ~~~~~~~ 500 (531)
.+.+++.
T Consensus 428 ~lW~~~~ 434 (488)
T cd00216 428 ELWKFRT 434 (488)
T ss_pred eeeEEEC
Confidence 9988875
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00033 Score=74.73 Aligned_cols=109 Identities=16% Similarity=0.248 Sum_probs=85.1
Q ss_pred EEEEEccCCCEEEEEec----CCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCcee
Q 009597 288 RDISFCNDGTKFLTASY----DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 363 (531)
Q Consensus 288 ~~l~fspdg~~l~s~s~----Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~ 363 (531)
+-++|+|...+|+.++. .|.|-|| .++|++-+...-.-....++|+|. ..+|+.|-.-|.+.+|...+.+.-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe---~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPE---EFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChH---HHHHhhccccceeEEEecCCceee
Confidence 34579999988887764 5788888 467775444433333344556553 357888888999999999888877
Q ss_pred EEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcC
Q 009597 364 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 400 (531)
Q Consensus 364 ~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~ 400 (531)
.....|..+|..+.|+++|..++++..-|.|.+|.+.
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 7778899999999999999999999999999999875
No 339
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.012 Score=61.23 Aligned_cols=191 Identities=16% Similarity=0.198 Sum_probs=102.5
Q ss_pred eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc------eeEEEcccCCCeeEEEEec
Q 009597 307 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------ITQEYDQHLGAVNTITFVD 380 (531)
Q Consensus 307 ~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~------~~~~~~~h~~~I~~l~~sp 380 (531)
.|.||+. .|+.+.++.... ..++.+.+... ..|++-..||.+++||+.... .+.........+..+.+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC
Confidence 5888875 566777766555 56666766554 457788899999999986322 1111111112222223333
Q ss_pred CCCEEEEEeCCCCEEEEE-cCCCeEEEEeeCC-------CCC-CccE-EEEeCCCCEEEEEEcCCeEEEEEcCCcceece
Q 009597 381 SNRRFVTSSDDKSLRVWE-FGIPVVIKYISEP-------HMH-SMPS-ISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 450 (531)
Q Consensus 381 ~~~~l~s~s~Dg~I~iwd-~~~~~~~~~~~~~-------~~~-~v~~-v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 450 (531)
+| .++. ..++.+.+.. ...+...+.+... +.. .... ..++.+....+....++.+.+.+......
T Consensus 138 ~G-ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 138 NG-IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred CC-EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 44 2222 2344443332 2222111111110 000 0111 22333444445555555555444322111
Q ss_pred eeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecc-CCcEEEEEEec
Q 009597 451 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHP 512 (531)
Q Consensus 451 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~v~~~p 512 (531)
.. ..+.+..|++||+|++||.-..+|.+.|....-.+.+..+... ......+.|.-
T Consensus 213 ---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 213 ---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred ---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 11 1245888999999999999999999999987766676666644 34556777775
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00019 Score=70.58 Aligned_cols=165 Identities=11% Similarity=0.132 Sum_probs=107.9
Q ss_pred EEEEECCCCceeEEEcccCCCeeEEEEecCCC-EEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCC-CCEEE
Q 009597 352 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLA 429 (531)
Q Consensus 352 I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~ 429 (531)
+++.+..+.+..+.+..|...|..++|+|..+ ++..++.+.+|+|.|+++...+..... + ..+.+++|.-+ .++|.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-Y-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-c-CCceeeeeccCCcceeE
Confidence 55555555566667778889999999999777 788999999999999999877766653 3 78999999874 57788
Q ss_pred EEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEE------EcCCCCEEEEEeCCCcEEEEECCC--CeEEEEee-c
Q 009597 430 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN------FSPDGRFVMSGDGEGKCWFWDWKS--CKVFRTLK-C 500 (531)
Q Consensus 430 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~------~spdg~~l~sgs~dg~I~iwd~~~--~~~~~~~~-~ 500 (531)
+|-..|.|.|||++..... +..+.+......|..++ ..+.|.+|+....+ +.+|++.- +.....+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~--~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele 328 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGP--LMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE 328 (463)
T ss_pred EeccCceEEEEEccCCCch--HhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC
Confidence 8889999999999875432 12222222222333332 23345555555443 56676542 22222122 2
Q ss_pred cCCcEEEEEEecCCCCEEEEEe
Q 009597 501 HEGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 501 h~~~V~~v~~~p~~~~~l~t~s 522 (531)
..+.+.++..++.....|+|.-
T Consensus 329 ~pG~cismqy~~~snh~l~tyR 350 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYR 350 (463)
T ss_pred CCcceeeeeecCccceEEEEec
Confidence 3567777888775455555543
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.76 E-value=0.0043 Score=69.27 Aligned_cols=193 Identities=13% Similarity=0.172 Sum_probs=120.1
Q ss_pred eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcC----C---
Q 009597 329 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG----I--- 401 (531)
Q Consensus 329 ~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~----~--- 401 (531)
.++.+.+.... +-++.+...|.|.+-|..+.... ....-...|.+++|+|++..++..+..+++.+-+.. .
T Consensus 70 ~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 70 EIVSVQFLADT-NSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred ceEEEEEeccc-ceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 44444444332 56888888999999988765432 222244789999999999999998888877764320 0
Q ss_pred ----------------CeEEEEeeC-----------------C---CCCCccEEEEeCCCCEEEEEE-----cCCeEEEE
Q 009597 402 ----------------PVVIKYISE-----------------P---HMHSMPSISLHPNTNWLAAQS-----LDNQILIY 440 (531)
Q Consensus 402 ----------------~~~~~~~~~-----------------~---~~~~v~~v~~sp~~~~l~s~s-----~Dg~I~iw 440 (531)
++....+.. + ....=++|.|--+|.++++.. ....|+||
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 000001110 0 011234589999999999833 23789999
Q ss_pred EcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe---CCCcEEEEECC---CCeEEEEeeccCCcEEEEEEecCC
Q 009597 441 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWDWK---SCKVFRTLKCHEGVCIGCEWHPLE 514 (531)
Q Consensus 441 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs---~dg~I~iwd~~---~~~~~~~~~~h~~~V~~v~~~p~~ 514 (531)
|.. + .+.... ....+.-.+++|-|.|..+++-. .|+.|.++.-. .+.....+......|..++|+. +
T Consensus 228 drE-g-~Lns~s----e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~ 300 (1265)
T KOG1920|consen 228 DRE-G-ALNSTS----EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-N 300 (1265)
T ss_pred ccc-c-hhhccc----CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-C
Confidence 976 2 121111 11122234499999999998764 45679999732 2222223333444589999999 7
Q ss_pred CCEEEE---EeCCCCEEee
Q 009597 515 QSKVAT---CGWDGLIKYW 530 (531)
Q Consensus 515 ~~~l~t---~s~Dg~I~iW 530 (531)
+..|++ +.....|++|
T Consensus 301 sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred CCceeeeecccccceEEEE
Confidence 788877 4445559988
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00024 Score=74.67 Aligned_cols=117 Identities=14% Similarity=0.208 Sum_probs=87.7
Q ss_pred ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEE-EcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeE--
Q 009597 328 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV-- 404 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~-~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~-- 404 (531)
+..+.+...+....+++.|++-|.+++|+-..+..... ..+..+.+..+..+++..+++.|+..|.|.++-+.....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 33444444445567899999999999999877664332 233446677778888888899999999999998765321
Q ss_pred EEEe---eCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 009597 405 IKYI---SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444 (531)
Q Consensus 405 ~~~~---~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~ 444 (531)
..++ ...|...|++++|++++..+.+|...|+|.+..+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1222 223678899999999999999999999999988876
No 343
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=3.6e-05 Score=82.20 Aligned_cols=177 Identities=14% Similarity=0.210 Sum_probs=120.3
Q ss_pred eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCC--CEEEEEcCCC-eEE
Q 009597 329 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK--SLRVWEFGIP-VVI 405 (531)
Q Consensus 329 ~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg--~I~iwd~~~~-~~~ 405 (531)
.++.|+. ..+.|++|+..|.|++|++.+|.....+..|..+|+.+.-+.+|..+++.+.-. ...+|++... ...
T Consensus 1105 Tc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1105 TCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR 1181 (1516)
T ss_pred eeEEeec---CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcc
Confidence 3444544 336799999999999999999999999999999999999999998877765543 4678998752 222
Q ss_pred EEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceecee-eeecCCccccceEEEEEcCCCCEEEEEeCCCcE
Q 009597 406 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK-KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 484 (531)
Q Consensus 406 ~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 484 (531)
+.+ ..-.++.|+.....-+.|+.-....|||+.++..+... ....+... .-++..|+|+..+|+ .||
T Consensus 1182 Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y--~~n~a~FsP~D~LIl---ndG-- 1249 (1516)
T KOG1832|consen 1182 HSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY--SNNLAHFSPCDTLIL---NDG-- 1249 (1516)
T ss_pred ccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh--hccccccCCCcceEe---eCc--
Confidence 222 23457788876555566666678899999987655432 11111111 124578999988876 344
Q ss_pred EEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEe
Q 009597 485 WFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 485 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s 522 (531)
.+||++..+.++.|...... ..-.||| .+.-++.-+
T Consensus 1250 vLWDvR~~~aIh~FD~ft~~-~~G~FHP-~g~eVIINS 1285 (1516)
T KOG1832|consen 1250 VLWDVRIPEAIHRFDQFTDY-GGGGFHP-SGNEVIINS 1285 (1516)
T ss_pred eeeeeccHHHHhhhhhheec-ccccccC-CCceEEeec
Confidence 47999988777777644422 2346888 444444433
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.69 E-value=0.01 Score=61.08 Aligned_cols=230 Identities=13% Similarity=0.056 Sum_probs=119.9
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceE--EEEccCCCCCcEEEEeeCCCeEEEEECCC----
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQWDMNT---- 359 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~--~~~~~~~~~~~~l~sg~~dg~I~iwd~~t---- 359 (531)
.|+.+.|.++..-|+.|...|.|.||.....+... ....... ..+... ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~l~di~~r~~~ 70 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG---NREQPPDLDYNFRRF---------SLNNSPGKLTDISDRAPP 70 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S-----------GGGSS-SEEE-GGG--T
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC---ccCCCcccCcccccc---------cccCCCcceEEehhhCCc
Confidence 58999999998889999999999999875543322 0000000 011100 00111122233321
Q ss_pred -----CceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeC-------CCCCCccEEEEeC----
Q 009597 360 -----KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-------PHMHSMPSISLHP---- 423 (531)
Q Consensus 360 -----~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-------~~~~~v~~v~~sp---- 423 (531)
..+...+....++|++++.+ +=.+++.|..+|.+.|.|+|.+..+..... .....++++.|.-
T Consensus 71 ~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 71 SLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp T-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred ccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence 12344455668999999998 455899999999999999999988766322 1233577787763
Q ss_pred -C---CCEEEEEEcCCeEEEEEcC--C--cceeceeeeecCCccccceEEEE-EcCC--------------------CCE
Q 009597 424 -N---TNWLAAQSLDNQILIYSTR--E--RFQLNKKKRFAGHIVAGYACQVN-FSPD--------------------GRF 474 (531)
Q Consensus 424 -~---~~~l~s~s~Dg~I~iwd~~--~--~~~~~~~~~~~~~~~~~~v~~l~-~spd--------------------g~~ 474 (531)
+ .-.|++|+..|.+.+|.+. . ++..........+ .+.+..|. |+.+ -.-
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~--~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNH--DSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--S--S----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccC--CCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 2 2578899999999999874 1 1221111111111 12232222 2111 012
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEec----CCCCEEEEEeCCCCEEee
Q 009597 475 VMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP----LEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 475 l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p----~~~~~l~t~s~Dg~I~iW 530 (531)
+++...+..++|+...+.+..++.....-.+..+.+.+ ..+..|++-..+|.|+++
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred EEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 33344466899999988877666553323444555532 145578888889999886
No 345
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.029 Score=55.64 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=126.6
Q ss_pred EEccCCC-EEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcc-
Q 009597 291 SFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ- 368 (531)
Q Consensus 291 ~fspdg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~- 368 (531)
.|.++.. ++.+--..+.|.-|+..+++...-...........+. .. ..|+++. .-+.+++..++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d---~~-g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALID---AG-GRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeec---CC-CeEEEEc--cccEEEeccCCceeEEeccc
Confidence 3556555 4445556677888887765433222122222222222 12 2333332 2345556555554333211
Q ss_pred ----cCCCeeEEEEecCCCEEEEEeC-----C----CCEEEEEcC-CCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcC
Q 009597 369 ----HLGAVNTITFVDSNRRFVTSSD-----D----KSLRVWEFG-IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 434 (531)
Q Consensus 369 ----h~~~I~~l~~sp~~~~l~s~s~-----D----g~I~iwd~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~D 434 (531)
.....+.+...|+|.+.++... . ..-.||-+. .+..++.+ ..+...-..++|+|+++.|......
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-cCcEEecCceEECCCCCEEEEEeCC
Confidence 2245678888999887665544 1 112344444 34344333 3345567789999999887776654
Q ss_pred -CeEEEEEcCC--cceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEeeccCCcEEEEEE
Q 009597 435 -NQILIYSTRE--RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEGVCIGCEW 510 (531)
Q Consensus 435 -g~I~iwd~~~--~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~V~~v~~ 510 (531)
+.|.-|++.. ...-............+..-.++...+|.+-+++...| .|.+|+.. ++++..+..+...+.+++|
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 7888887752 11111111111111234455578888888876555554 89999987 9999999887677888888
Q ss_pred ecCCCC-EEEEEeCC
Q 009597 511 HPLEQS-KVATCGWD 524 (531)
Q Consensus 511 ~p~~~~-~l~t~s~D 524 (531)
--.+.+ +++|+...
T Consensus 263 gG~~~~~L~iTs~~~ 277 (307)
T COG3386 263 GGPDLNTLYITSARS 277 (307)
T ss_pred eCCCcCEEEEEecCC
Confidence 643334 44444443
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.65 E-value=0.00014 Score=46.43 Aligned_cols=39 Identities=38% Similarity=0.717 Sum_probs=35.5
Q ss_pred CeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEe
Q 009597 274 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 312 (531)
Q Consensus 274 ~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 312 (531)
++++..+..|...|.+++|++++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456778889999999999999999999999999999996
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.64 E-value=0.029 Score=58.64 Aligned_cols=221 Identities=10% Similarity=0.051 Sum_probs=107.4
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCce
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 362 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~ 362 (531)
..-....|.++|+|+.++.++ ||...|+.......... .....+.|... +.+++-...++|.|+.--..+.
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~------G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF------GSGLSFVWSSR--NRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE------EE-SEEEE-TS--SEEEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc------CceeEEEEecC--ccEEEEECCCeEEEEEcCcccc
Confidence 445589999999999888866 77888887433333221 12233334332 3477777788899963322222
Q ss_pred eEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEc
Q 009597 363 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 442 (531)
Q Consensus 363 ~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~ 442 (531)
+..+... ..+..|-. |..|+..+.+ .|.+||+.++..+..+.. ..|..+.|++++.+++..+.+ .+.|++.
T Consensus 102 ~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 102 VKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp T-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred ceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 2233221 12333332 7777777655 799999999999988853 348999999999999988755 5666654
Q ss_pred CCcce-------ec-eeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCC
Q 009597 443 RERFQ-------LN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 514 (531)
Q Consensus 443 ~~~~~-------~~-~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~ 514 (531)
..... +. .+... |.....|.+.+|..+ .++-.+.. .|+. +..|.. ..+..-..++.-+.+.+ .
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~--~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~-~ 243 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELI--HEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLP-K 243 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEE--EEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEET-T
T ss_pred cchhcccccccCchhceEEE--EEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEc-c
Confidence 32200 00 01111 111233555667655 33322222 5544 223332 11221234566666777 5
Q ss_pred CCEEEEEeCCCCEEee
Q 009597 515 QSKVATCGWDGLIKYW 530 (531)
Q Consensus 515 ~~~l~t~s~Dg~I~iW 530 (531)
...+.....|+.|..+
T Consensus 244 ~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISY 259 (443)
T ss_dssp TTEEEEE-TT--EEEE
T ss_pred CCEEEEEECCCCEEEE
Confidence 5677777788777543
No 348
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.61 E-value=0.044 Score=51.51 Aligned_cols=103 Identities=12% Similarity=0.074 Sum_probs=71.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeE
Q 009597 296 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 375 (531)
Q Consensus 296 g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~ 375 (531)
|.+++.|.+.|.+++.+..+|..+..+..-..+.+-..... .+.++.+|+.|++.+..|.++..++...+...+...+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~--~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC--CCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 56789999999999999999988888766555444333222 2368999999999999999999988887655444444
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEcC
Q 009597 376 ITFVDSNRRFVTSSDDKSLRVWEFG 400 (531)
Q Consensus 376 l~~sp~~~~l~s~s~Dg~I~iwd~~ 400 (531)
-+..|-...|..+...|.|.--...
T Consensus 141 P~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred ceecCCCceEEEEeccceEEEEccC
Confidence 4555533344444445544443333
No 349
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.61 E-value=0.072 Score=51.03 Aligned_cols=199 Identities=11% Similarity=0.066 Sum_probs=123.4
Q ss_pred cEEEEccCCCcceEEEEccCCCCCcEEEEeeCCC--eEEEEECCCCceeEEEcccCC-CeeEEEEecCCCEEEEEeCCCC
Q 009597 317 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSDDKS 393 (531)
Q Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwd~~t~~~~~~~~~h~~-~I~~l~~sp~~~~l~s~s~Dg~ 393 (531)
+.+.++.+......-.+.... ++.++-+.+.-| .|+.+|+.+++.......... ---.|+.. +++.+...-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 456666666665555555422 225666666665 799999999988766543321 22344544 3455666677899
Q ss_pred EEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCC
Q 009597 394 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 473 (531)
Q Consensus 394 I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 473 (531)
..+||..+.+.+..+.-+ ..=..++ .+++.|+.......|.++|..+......+........-..++.+.|- +|.
T Consensus 112 ~f~yd~~tl~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEETTTTEEEEEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEEEccccceEEEEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999999999888887643 3445555 46777888777889999998775555444444333333456667665 566
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeec------------c---CCcEEEEEEecCCCCEEEEEe
Q 009597 474 FVMSGDGEGKCWFWDWKSCKVFRTLKC------------H---EGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 474 ~l~sgs~dg~I~iwd~~~~~~~~~~~~------------h---~~~V~~v~~~p~~~~~l~t~s 522 (531)
..|=.=....|...|..+|++...+.. + ....+.++|.|..+.+++||-
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 665555667888899999998877631 1 346899999997777777763
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.60 E-value=0.02 Score=57.65 Aligned_cols=211 Identities=8% Similarity=0.134 Sum_probs=115.9
Q ss_pred eeeeecccCeeeEEecCc-cCceEEEE---EccC----CCEEEEEec----------CCeEEEEeCCCC-----cE--EE
Q 009597 266 VEDKSTFHGKCMRTYMGH-SKAVRDIS---FCND----GTKFLTASY----------DKNIKYWDTETG-----QV--IR 320 (531)
Q Consensus 266 i~~~~~~~~~~~~~l~gH-~~~V~~l~---fspd----g~~l~s~s~----------Dg~I~vWd~~t~-----~~--i~ 320 (531)
+++.+..+.+.+.++.-. ...|.+++ |..+ ..+|+.|.. .|.|.++++... +. +.
T Consensus 4 i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~ 83 (321)
T PF03178_consen 4 IRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH 83 (321)
T ss_dssp EEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE
T ss_pred EEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE
Confidence 455555555555444321 22344443 4432 456776653 289999999884 22 22
Q ss_pred EccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc-eeEEEcc-cCCCeeEEEEecCCCEEEEEeCCCCEEEEE
Q 009597 321 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWE 398 (531)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~-~~~~~~~-h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd 398 (531)
....... +.++..... . |+++ ..+.|.+|++...+ ....-.. ....+.++... +++++.|..-+.+.++.
T Consensus 84 ~~~~~g~--V~ai~~~~~--~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 84 STEVKGP--VTAICSFNG--R-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEESS---EEEEEEETT--E-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEeecCc--ceEhhhhCC--E-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 2333333 444444322 3 3333 35899999998777 4333222 22355555554 66999999988899886
Q ss_pred cCC-CeEEEEe-eCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCc-------c-eeceeeeecCCccccceEEE--
Q 009597 399 FGI-PVVIKYI-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER-------F-QLNKKKRFAGHIVAGYACQV-- 466 (531)
Q Consensus 399 ~~~-~~~~~~~-~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~-------~-~~~~~~~~~~~~~~~~v~~l-- 466 (531)
++. +..+..+ .......++++.+-++++.++++..+|.|.++..... . .+.....+. ....++++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~ 232 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRR 232 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE---CCCccceEEE
Confidence 543 3323333 3334566888888866679999999999999987531 1 222222222 23345555
Q ss_pred -EEcC--CCC------EEEEEeCCCcEEEE
Q 009597 467 -NFSP--DGR------FVMSGDGEGKCWFW 487 (531)
Q Consensus 467 -~~sp--dg~------~l~sgs~dg~I~iw 487 (531)
++.| .+. .++.++.+|.|.+.
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4455 222 47778888888743
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00056 Score=71.99 Aligned_cols=143 Identities=11% Similarity=0.083 Sum_probs=100.5
Q ss_pred CCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceec
Q 009597 370 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449 (531)
Q Consensus 370 ~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 449 (531)
...|.--++...+++++.|+.-|.+.+|+-..+.....-.......+..+.++++..++|.|+..|.|.++-+.......
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 34455555666889999999999999999888766555544445566677889999999999999999999887643222
Q ss_pred eeeeecCCc-cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeeccCCcEEEEEEec
Q 009597 450 KKKRFAGHI-VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWHP 512 (531)
Q Consensus 450 ~~~~~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~v~~~p 512 (531)
....-..+. +...|++++|++++..|++|+..|+|..-.+.+. .....+..-.+.|..+....
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 211111111 2567999999999999999999999998877662 11222223345666666553
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.53 E-value=0.079 Score=51.83 Aligned_cols=223 Identities=11% Similarity=0.141 Sum_probs=122.9
Q ss_pred CCCCceeeeeec-ccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEc-------------cCC
Q 009597 260 GEKGEHVEDKST-FHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF-------------STG 325 (531)
Q Consensus 260 ~~~~~~i~~~~~-~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~-------------~~~ 325 (531)
|.++| +..... ...+..+.. +...|..|...++-+.|++-+ |+.|.++++......... ...
T Consensus 13 Gt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 88 (275)
T PF00780_consen 13 GTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLP 88 (275)
T ss_pred EECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccccccc
Confidence 35555 555555 222222222 333499999999877776665 699999998765443311 112
Q ss_pred CcceEEEEc-cCCCCCcEEEEeeCCCeEEEEECCCC-----ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEc
Q 009597 326 KIPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTK-----EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 399 (531)
Q Consensus 326 ~~~~~~~~~-~~~~~~~~l~sg~~dg~I~iwd~~t~-----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~ 399 (531)
....+..+. .....+...++.....+|.+|..... ...+++... ..+.+++|. ++.++.|..++ ..+.|+
T Consensus 89 ~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~~~-f~~idl 164 (275)
T PF00780_consen 89 ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTSKG-FYLIDL 164 (275)
T ss_pred ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeCCc-eEEEec
Confidence 222333333 12222234444555558888877542 455565533 788899998 56677777554 888899
Q ss_pred CCCeEEEEeeCCC-----------CCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceec-eeeeecCCccccceEEEE
Q 009597 400 GIPVVIKYISEPH-----------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN-KKKRFAGHIVAGYACQVN 467 (531)
Q Consensus 400 ~~~~~~~~~~~~~-----------~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~ 467 (531)
.++.......... ..++..+.+ +++.+|++ .+..-.+.|.. +.... ..-.+.. .+..++
T Consensus 165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--~~~~g~fv~~~-G~~~r~~~i~W~~-----~p~~~~ 235 (275)
T PF00780_consen 165 NTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--YDNIGVFVNKN-GEPSRKSTIQWSS-----APQSVA 235 (275)
T ss_pred CCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE--ecceEEEEcCC-CCcCcccEEEcCC-----chhEEE
Confidence 8765543332111 112223333 34555554 23333344443 32222 1111221 233345
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccC
Q 009597 468 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 502 (531)
Q Consensus 468 ~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 502 (531)
+. ..||+..+.+ .|.||++.++++++.+....
T Consensus 236 ~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 236 YS--SPYLIAFSSN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EE--CCEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence 53 4577776664 59999999999999887543
No 353
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.46 E-value=0.16 Score=54.72 Aligned_cols=184 Identities=16% Similarity=0.168 Sum_probs=108.9
Q ss_pred CCceeeeeecccCeeeEEecCcc-CceE----------EEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc--
Q 009597 262 KGEHVEDKSTFHGKCMRTYMGHS-KAVR----------DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-- 328 (531)
Q Consensus 262 ~~~~i~~~~~~~~~~~~~l~gH~-~~V~----------~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~-- 328 (531)
..+.+.-.+..+|+.+.++.-.. ..+. .+++ .+..++.++.|+.|.-.|..+|+.+..+......
T Consensus 77 ~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~ 154 (527)
T TIGR03075 77 SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG 154 (527)
T ss_pred CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccccccccc
Confidence 34566777777888877765321 1111 1222 2345777888999999999999998877543221
Q ss_pred eEEEEccCCCCCcEEEEeeC------CCeEEEEECCCCceeEEEcccCC-------------------------------
Q 009597 329 YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLG------------------------------- 371 (531)
Q Consensus 329 ~~~~~~~~~~~~~~l~sg~~------dg~I~iwd~~t~~~~~~~~~h~~------------------------------- 371 (531)
..+...+.-.+ ..++++.. +|.|..+|.++|+.+-.+..-..
T Consensus 155 ~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~ 233 (527)
T TIGR03075 155 YTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGG 233 (527)
T ss_pred ccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCC
Confidence 11111111112 24555542 68999999999998766533111
Q ss_pred Cee-EEEEecCCCEEEEEeCC-----C-----------CEEEEEcCCCeEEEEeeC-CCCC-------CccEEEEeCCCC
Q 009597 372 AVN-TITFVDSNRRFVTSSDD-----K-----------SLRVWEFGIPVVIKYISE-PHMH-------SMPSISLHPNTN 426 (531)
Q Consensus 372 ~I~-~l~~sp~~~~l~s~s~D-----g-----------~I~iwd~~~~~~~~~~~~-~~~~-------~v~~v~~sp~~~ 426 (531)
.++ .+++.+...++..+... + +|.-.|+++++..-.+.. +|.. ...-+.+..+|+
T Consensus 234 ~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~ 313 (527)
T TIGR03075 234 ATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGK 313 (527)
T ss_pred CccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCc
Confidence 111 23556655555554421 2 577778888877655543 2211 112223334665
Q ss_pred ---EEEEEEcCCeEEEEEcCCccee
Q 009597 427 ---WLAAQSLDNQILIYSTRERFQL 448 (531)
Q Consensus 427 ---~l~s~s~Dg~I~iwd~~~~~~~ 448 (531)
.++.+..+|.+.+.|..+++.+
T Consensus 314 ~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 314 PRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEEEEeCCCceEEEEECCCCcee
Confidence 7889999999999999988764
No 354
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.00021 Score=65.58 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=87.6
Q ss_pred EEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccce
Q 009597 384 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 463 (531)
Q Consensus 384 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 463 (531)
.+...+.|+.|+-++++..+........+... .....-+..+++|+.+|.|.+|............... .....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~ 105 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESID 105 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcc---cccce
Confidence 45667788888888876543211111101111 1111235679999999999999876321111111111 11223
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccC-CcEEEEEEecCCCCEEEEE--eCCCCEEeeC
Q 009597 464 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATC--GWDGLIKYWD 531 (531)
Q Consensus 464 ~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~l~t~--s~Dg~I~iWD 531 (531)
+.|.--.++.+..++..+|.|+.|++...+.+.....|. .++..+..+. ...+++.+ |.|..++.||
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcc
Confidence 334444566788999999999999999999988888787 4555555555 55667777 7888888886
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0064 Score=62.35 Aligned_cols=142 Identities=14% Similarity=0.211 Sum_probs=97.6
Q ss_pred CcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCE-------EEEEeCCCCEEEEEcCCCeE-EEEeeCC
Q 009597 340 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-------FVTSSDDKSLRVWEFGIPVV-IKYISEP 411 (531)
Q Consensus 340 ~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~-------l~s~s~Dg~I~iwd~~~~~~-~~~~~~~ 411 (531)
.-++..+.....|+-.|++.|+++.++..|.. |+-+.+.|+.+. -+.|-.|..|.-||.+.... .......
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 35667778888999999999999999998877 888888886542 34566788899999875322 1111111
Q ss_pred ----CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 009597 412 ----HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 487 (531)
Q Consensus 412 ----~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iw 487 (531)
......|++-.. ..+|++|+.+|.|++||- .+.+ ....+++- ...|..|..+.+|++|++.+. ..|.+.
T Consensus 425 kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~--AKTAlPgL--G~~I~hVdvtadGKwil~Tc~-tyLlLi 497 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRR--AKTALPGL--GDAIKHVDVTADGKWILATCK-TYLLLI 497 (644)
T ss_pred cccccccccceeeecC-CceEEEeecCCcEEeehh-hhhh--hhhccccc--CCceeeEEeeccCcEEEEecc-cEEEEE
Confidence 223455555554 457999999999999996 3222 22334444 455888999999999976654 456666
Q ss_pred EC
Q 009597 488 DW 489 (531)
Q Consensus 488 d~ 489 (531)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 54
No 356
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.43 E-value=0.033 Score=51.57 Aligned_cols=221 Identities=14% Similarity=0.128 Sum_probs=120.2
Q ss_pred CCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEe-eCCCeEEEEECC--CCceeEEEc-----
Q 009597 296 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMN--TKEITQEYD----- 367 (531)
Q Consensus 296 g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg-~~dg~I~iwd~~--t~~~~~~~~----- 367 (531)
+.++..--..|.|.-||+++.+..+.--.......+.+ +.......++++ +..-.|.-||.. .....+++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 34455544556777788887665443322222222222 222222334444 444455667743 223333321
Q ss_pred ccCCCeeEEEEecCCCEEEEEeCC---------CCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEE-EEEcCCeE
Q 009597 368 QHLGAVNTITFVDSNRRFVTSSDD---------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA-AQSLDNQI 437 (531)
Q Consensus 368 ~h~~~I~~l~~sp~~~~l~s~s~D---------g~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~s~Dg~I 437 (531)
......+.-..+|+|++++-.-.| |.++.|-.... +..+.. .-.--..++|+.+.+.+. +-+.+-.|
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~~-~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIWN-CVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeeeh-hccCCccccccccCcEEEEEccCceEE
Confidence 123566777888999986543332 33344433221 111111 122235678887666554 44556678
Q ss_pred EEEE--cCCcceeceeeeecCCc----cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEe
Q 009597 438 LIYS--TRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 511 (531)
Q Consensus 438 ~iwd--~~~~~~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~ 511 (531)
.-|| ..++...++...+.-.. ..-..-.+++.-+|.+.++.-..|+|...|..+|+.+.+++-....|++++|-
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 7777 44443322221111110 01112225567788888888899999999999999999999889999999997
Q ss_pred cCCCCEEEE
Q 009597 512 PLEQSKVAT 520 (531)
Q Consensus 512 p~~~~~l~t 520 (531)
-.+-..|++
T Consensus 263 Gkn~d~~yv 271 (310)
T KOG4499|consen 263 GKNLDILYV 271 (310)
T ss_pred CCCccEEEE
Confidence 533344433
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.43 E-value=0.045 Score=52.53 Aligned_cols=197 Identities=14% Similarity=0.223 Sum_probs=113.0
Q ss_pred ceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEccc-CCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC----
Q 009597 328 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP---- 402 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h-~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~---- 402 (531)
...+.+.+ +.+.++++....+.|..++. +|+.++.+... .+..-.|++..++.++++.-.++.+.++++...
T Consensus 24 ~SGLTy~p--d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNP--DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEET--TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcC--CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 34455555 44578999999999999997 47888877544 356789999887876666656889999988331
Q ss_pred --eEEEEee--C--CCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC---cceeceee--eec-CCccccceEEEEEcC
Q 009597 403 --VVIKYIS--E--PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE---RFQLNKKK--RFA-GHIVAGYACQVNFSP 470 (531)
Q Consensus 403 --~~~~~~~--~--~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~---~~~~~~~~--~~~-~~~~~~~v~~l~~sp 470 (531)
.....+. . .+...+-.++|+|.++.|+++-...-..||.+.. ...+.... .+. .......+..+.++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 1112222 1 2445688999999888888887777777777654 11111100 011 011122356688888
Q ss_pred C-CCEEEEEeCCCcEEEEECCCCeEEEEeeccC---------CcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 471 D-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE---------GVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 471 d-g~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~---------~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
. +.+++.++.+..|.++| ..|+++..+.-.. ..--+++|.+ ++.+ ...+.-+..++|
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--E-EEEETTTEEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCE-EEEcCCceEEEe
Confidence 6 56667777888999999 7788776664222 1357899999 5654 444555555443
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.39 E-value=0.017 Score=59.48 Aligned_cols=202 Identities=11% Similarity=0.060 Sum_probs=109.1
Q ss_pred eeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC---------cceEEEEc-----cCCCCCc
Q 009597 276 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---------IPYVVKLN-----PDDDKQN 341 (531)
Q Consensus 276 ~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~---------~~~~~~~~-----~~~~~~~ 341 (531)
+..-+....++|++++.|.=| +++.|..+|.+.|.|++....+..-.... .+.++.|. -+....-
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 344555568999999998655 78999999999999998888776632222 12233332 1222235
Q ss_pred EEEEeeCCCeEEEEECC--C-Cce----eEEEcccCCCeeEEEEe-cCC--------------------CEEEEEeCCCC
Q 009597 342 ILLAGMSDKKIVQWDMN--T-KEI----TQEYDQHLGAVNTITFV-DSN--------------------RRFVTSSDDKS 393 (531)
Q Consensus 342 ~l~sg~~dg~I~iwd~~--t-~~~----~~~~~~h~~~I~~l~~s-p~~--------------------~~l~s~s~Dg~ 393 (531)
++++|+..|.+.+|.+. . +.. ......+.++|..|... .+. ..++....+..
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 78999999999999874 1 211 12223456676666533 211 12344444677
Q ss_pred EEEEEcCCCeEEEEeeCCCCCCccEEEE-----eCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEE
Q 009597 394 LRVWEFGIPVVIKYISEPHMHSMPSISL-----HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 468 (531)
Q Consensus 394 I~iwd~~~~~~~~~~~~~~~~~v~~v~~-----sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 468 (531)
++++..-+.+....... .......+++ ...+..|++-..+|.|++|.+..-+.+......... ....+...++
T Consensus 237 irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~-d~~~~~~ssi 314 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL-DSRRLSSSSI 314 (395)
T ss_dssp EEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----HHHHTT-EE
T ss_pred eEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc-ccccccccEE
Confidence 99999887776655542 2222333444 235778899999999999999886665444432211 1122334677
Q ss_pred cCCCCEEEEEeC
Q 009597 469 SPDGRFVMSGDG 480 (531)
Q Consensus 469 spdg~~l~sgs~ 480 (531)
+++|..++-.+.
T Consensus 315 s~~Gdi~~~~gp 326 (395)
T PF08596_consen 315 SRNGDIFYWTGP 326 (395)
T ss_dssp -TTS-EEEE-SS
T ss_pred CCCCCEEEEeCc
Confidence 888887766654
No 359
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.39 E-value=0.01 Score=61.92 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=81.0
Q ss_pred EcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCc
Q 009597 366 YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 445 (531)
Q Consensus 366 ~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~ 445 (531)
+.........+.++|++++++++ .||.-.|+......... .+.-..++|.+. +.+|+-...++|.|+.--..
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~------~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA------FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE------EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc------cCceeEEEEecC-ccEEEEECCCeEEEEEcCcc
Confidence 33344567899999999988884 47778888754444432 234567889984 45777777899999743222
Q ss_pred ceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCC
Q 009597 446 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 525 (531)
Q Consensus 446 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg 525 (531)
... +.+... ..+..| |. |.+|...+.+ .|.+||+.+++.++.+... .|..+.|++ ++.+++-.+.+
T Consensus 100 ~~~---k~i~~~---~~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~-~g~~val~t~~- 165 (443)
T PF04053_consen 100 EVV---KSIKLP---FSVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD-DGELVALVTKD- 165 (443)
T ss_dssp -TT--------S---S-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T-TSSEEEEE-S--
T ss_pred ccc---eEEcCC---cccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC-CCCEEEEEeCC-
Confidence 111 111111 112222 22 7777777655 8999999999999999844 389999999 77788888765
Q ss_pred CEEee
Q 009597 526 LIKYW 530 (531)
Q Consensus 526 ~I~iW 530 (531)
.|.|+
T Consensus 166 ~i~il 170 (443)
T PF04053_consen 166 SIYIL 170 (443)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 45553
No 360
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.38 E-value=0.0006 Score=43.32 Aligned_cols=39 Identities=33% Similarity=0.617 Sum_probs=34.2
Q ss_pred CeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 492 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 492 ~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
++++..+..|...|.++.|++ ...++++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 456677788999999999999 668999999999999997
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.37 E-value=0.0093 Score=65.80 Aligned_cols=140 Identities=15% Similarity=0.198 Sum_probs=94.6
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEcccCCC-eeEEEEec-----CCCEEEEEeCCCCEEEEEcCCCe--EEEEe--eCCC
Q 009597 343 LLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVD-----SNRRFVTSSDDKSLRVWEFGIPV--VIKYI--SEPH 412 (531)
Q Consensus 343 l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~-I~~l~~sp-----~~~~l~s~s~Dg~I~iwd~~~~~--~~~~~--~~~~ 412 (531)
|........|+-.|++.|+++.++..|... |..++-.. .....+.|-.+..|..||.|... .+... .-..
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 334456689999999999999999988754 55544321 12345667778889999998743 22111 1123
Q ss_pred CCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009597 413 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 489 (531)
Q Consensus 413 ~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 489 (531)
....+|++-..+| +||+|+.+|.|++||-- +. .....+++- +..|..|+.+.||++|++.+.. .|.+++.
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~--~AKT~lp~l--G~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GK--RAKTALPGL--GDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeeccc-ch--hhhhcCCCC--CCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 4456777776555 68999999999999943 22 222334433 4669999999999999876654 6666664
No 362
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.34 E-value=0.084 Score=50.59 Aligned_cols=199 Identities=12% Similarity=0.124 Sum_probs=121.2
Q ss_pred eeeEEecCcc-CceEEEEEccCCCEEEEEecCC--eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCe
Q 009597 275 KCMRTYMGHS-KAVRDISFCNDGTKFLTASYDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 351 (531)
Q Consensus 275 ~~~~~l~gH~-~~V~~l~fspdg~~l~s~s~Dg--~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 351 (531)
+.+.++.... .-...+.|..+|.++-|.+.-| .|+.+|+.+++.+...........--+...+ ..++...-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 5566665333 3356688877888888887766 7999999999988776655443322222222 257777888999
Q ss_pred EEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCC-C---CCccEEEEeCCCCE
Q 009597 352 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-M---HSMPSISLHPNTNW 427 (531)
Q Consensus 352 I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~---~~v~~v~~sp~~~~ 427 (531)
..+||..+.+.+.++.- .+.=+.++ .++..|+.+.....|+++|..+......+.-.. . ..+.-+.|. +|.+
T Consensus 112 ~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I 187 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI 187 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred EEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence 99999999999888853 35667777 356777777777789999988876666554321 1 234456665 5666
Q ss_pred EEEEEcCCeEEEEEcCCcceeceeee--e--------cCCccccceEEEEEcCCCCEEEEEe
Q 009597 428 LAAQSLDNQILIYSTRERFQLNKKKR--F--------AGHIVAGYACQVNFSPDGRFVMSGD 479 (531)
Q Consensus 428 l~s~s~Dg~I~iwd~~~~~~~~~~~~--~--------~~~~~~~~v~~l~~spdg~~l~sgs 479 (531)
.|=.-....|...|..++.....+.. + ..+......+.|++.|....|...+
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66555667777788777755432210 0 0111134577899988765554444
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.054 Score=51.70 Aligned_cols=226 Identities=14% Similarity=0.081 Sum_probs=127.7
Q ss_pred cCeeeEEecCccCceEEEEEccCC-CEEEEEecCCe-EEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeC--
Q 009597 273 HGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKN-IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS-- 348 (531)
Q Consensus 273 ~~~~~~~l~gH~~~V~~l~fspdg-~~l~s~s~Dg~-I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-- 348 (531)
.|+++.... -...-..|.|+|.. .-++.+-.-|+ ..++|..+.+...++...+.-...---..+.++.+|.+.-.
T Consensus 57 aGk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 57 AGKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred CCceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 355554432 12334567888853 34555555454 67889988877666644333222211112223456666543
Q ss_pred ---CCeEEEEECCCC-ceeEEEcccCCCeeEEEEecCCCEEEEEeC------------------CCCEEEEEcCCCeEEE
Q 009597 349 ---DKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSD------------------DKSLRVWEFGIPVVIK 406 (531)
Q Consensus 349 ---dg~I~iwd~~t~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~------------------Dg~I~iwd~~~~~~~~ 406 (531)
-|.|-|||.+.+ +.+-++..|.-.-..+.|.+||+.++.+.. .-++.+.|..++..+.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 378999999754 567788888878889999999999887642 1123344444454444
Q ss_pred EeeCC---CCCCccEEEEeCCCCEEEEEEcCCe-----EEEEEcCCcceeceeeeec--CCccccceEEEEEcCCCCEEE
Q 009597 407 YISEP---HMHSMPSISLHPNTNWLAAQSLDNQ-----ILIYSTRERFQLNKKKRFA--GHIVAGYACQVNFSPDGRFVM 476 (531)
Q Consensus 407 ~~~~~---~~~~v~~v~~sp~~~~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~ 476 (531)
....+ +..+|..++..++|..++.+-..|. -.+=-...+..+..+.... ......++-+|+.+.+..+++
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~ 295 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA 295 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence 33322 4556778888888877666543331 1111111111111111000 001134566788887666666
Q ss_pred EEeCC-CcEEEEECCCCeEEEEee
Q 009597 477 SGDGE-GKCWFWDWKSCKVFRTLK 499 (531)
Q Consensus 477 sgs~d-g~I~iwd~~~~~~~~~~~ 499 (531)
..+-. +...+||..+|..+..-.
T Consensus 296 lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 296 LTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred EecCCCCeEEEEEcCCCcEEeccc
Confidence 66644 457799999999876544
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.24 E-value=0.12 Score=52.70 Aligned_cols=243 Identities=15% Similarity=0.197 Sum_probs=120.0
Q ss_pred ceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC-----------------
Q 009597 264 EHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK----------------- 326 (531)
Q Consensus 264 ~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~----------------- 326 (531)
+.+.+++..+++....... ...+....|||+|+.++-.. ++.|.+++..++...+.-..+.
T Consensus 23 ~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred eeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 4566777766555444333 77899999999999888776 6799999988874443222221
Q ss_pred -cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCC---CeeEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 009597 327 -IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---AVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 327 -~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~---~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~ 402 (531)
....+.|++++ ..+++.-..+..|..+.+. .+..... .+..+.+-.-|.-.... .+.|+|+.++
T Consensus 101 ~~~~~~~WSpd~--~~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~~~YPk~G~~np~v----~l~v~~~~~~ 168 (353)
T PF00930_consen 101 DRRSAVWWSPDS--KYLAFLRFDEREVPEYPLP------DYSPPDSQYPEVESIRYPKAGDPNPRV----SLFVVDLASG 168 (353)
T ss_dssp SSSBSEEE-TTS--SEEEEEEEE-TTS-EEEEE------EESSSTESS-EEEEEE--BTTS---EE----EEEEEESSST
T ss_pred ccccceEECCCC--CEEEEEEECCcCCceEEee------ccCCccccCCcccccccCCCCCcCCce----EEEEEECCCC
Confidence 11223344432 2344444444444333321 1111111 23344443222221111 3667888777
Q ss_pred eEEEE-ee---CCCCCCccEEEEeCCCCEEEEEEcC--C---eEEEEEcCCcceeceeee-ecCCccccceEEEEEc-CC
Q 009597 403 VVIKY-IS---EPHMHSMPSISLHPNTNWLAAQSLD--N---QILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFS-PD 471 (531)
Q Consensus 403 ~~~~~-~~---~~~~~~v~~v~~sp~~~~l~s~s~D--g---~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~s-pd 471 (531)
+.... .. ......+..+.|.+++..|+..-.+ . .+.++|..++........ ..+-. . ....+.|. ++
T Consensus 169 ~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv-~-~~~~~~~~~~~ 246 (353)
T PF00930_consen 169 KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV-D-VYDPPHFLGPD 246 (353)
T ss_dssp CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS-S-SSSEEEE-TTT
T ss_pred cEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce-e-eecccccccCC
Confidence 54321 11 2345678899999998855544433 2 466677766433222211 11111 1 11124444 54
Q ss_pred -CCEEEEEeCCCc--EEEEECCCCeEEEEeeccCCcEEE-EEEecCCCCEEEEEeC
Q 009597 472 -GRFVMSGDGEGK--CWFWDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGW 523 (531)
Q Consensus 472 -g~~l~sgs~dg~--I~iwd~~~~~~~~~~~~h~~~V~~-v~~~p~~~~~l~t~s~ 523 (531)
+.+|.....+|. |++++...+.. ..+....-.|.. +.|.+.++.+++++..
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred CCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecC
Confidence 445555556775 55566666653 345444445644 6677755555556654
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.14 E-value=0.032 Score=45.90 Aligned_cols=100 Identities=12% Similarity=0.220 Sum_probs=68.2
Q ss_pred eEEEEEcc---CC-CEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCce
Q 009597 287 VRDISFCN---DG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 362 (531)
Q Consensus 287 V~~l~fsp---dg-~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~ 362 (531)
|++|++.. || +.|+.||.|..|+||+- .+.+..+.....+..+.-... ..|+.+..+|+|-+|+-. ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~----~~F~Y~l~NGTVGvY~~~--~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG----GRFAYALANGTVGVYDRS--QR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC----CEEEEEecCCEEEEEeCc--ce
Confidence 67777765 33 57999999999999974 467777766555554444432 469999999999999853 23
Q ss_pred eEEEcccCCCeeEEEEecCC----CEEEEEeCCCCEE
Q 009597 363 TQEYDQHLGAVNTITFVDSN----RRFVTSSDDKSLR 395 (531)
Q Consensus 363 ~~~~~~h~~~I~~l~~sp~~----~~l~s~s~Dg~I~ 395 (531)
+...+.. ..+.++.+..-. ..|++|-.+|.|-
T Consensus 74 lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3333322 346677666532 2688998888764
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.13 E-value=0.4 Score=49.99 Aligned_cols=231 Identities=10% Similarity=0.092 Sum_probs=116.6
Q ss_pred ceEEEEEccCCCEEEEE-ecCC----eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeC----------CC
Q 009597 286 AVRDISFCNDGTKFLTA-SYDK----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS----------DK 350 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~-s~Dg----~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~----------dg 350 (531)
.+...+++|||++||-+ +..| .|+++|+++|+.+...-.......+.|.. ++..++.+... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~--d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD--DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT--TSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC--CCCEEEEEEeCcccccccCCCCc
Confidence 44568899999988744 4444 59999999998765321111111244444 33345555432 23
Q ss_pred eEEEEECCCCce--eEEEcccCCC--eeEEEEecCCCEEEEEeCC----CCEEEEEcCCC----eEEEEeeCCCCCCccE
Q 009597 351 KIVQWDMNTKEI--TQEYDQHLGA--VNTITFVDSNRRFVTSSDD----KSLRVWEFGIP----VVIKYISEPHMHSMPS 418 (531)
Q Consensus 351 ~I~iwd~~t~~~--~~~~~~h~~~--I~~l~~sp~~~~l~s~s~D----g~I~iwd~~~~----~~~~~~~~~~~~~v~~ 418 (531)
.|+.|.+.+... ...+...... ...+..++++++|+..+.. ..+.+.|+... .....+.. ....+..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-REDGVEY 281 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-SSSS-EE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-CCCceEE
Confidence 478888877643 2444443333 5678889999987754432 24777788764 23333332 2333333
Q ss_pred EEEeCCCCEEEEEEc---CCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE-eCCC--cEEEEECCCC
Q 009597 419 ISLHPNTNWLAAQSL---DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-DGEG--KCWFWDWKSC 492 (531)
Q Consensus 419 v~~sp~~~~l~s~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg--~I~iwd~~~~ 492 (531)
..-+..+.+++.... .+.|...++...........+..+.....+..+.. .+.+|+.. -.++ .|+++++..+
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCC
Confidence 222334444444332 35777777776543211223333322223444443 34455544 3444 5889999844
Q ss_pred eEEEEeec-cCCcEEEEEEecCCCCEEEEE
Q 009597 493 KVFRTLKC-HEGVCIGCEWHPLEQSKVATC 521 (531)
Q Consensus 493 ~~~~~~~~-h~~~V~~v~~~p~~~~~l~t~ 521 (531)
.....+.. -.+.|..+...+....+.++.
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ 389 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSY 389 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence 44444442 344456665555333444433
No 367
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.3 Score=50.82 Aligned_cols=169 Identities=11% Similarity=0.099 Sum_probs=90.6
Q ss_pred eeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcc------eEEEEc-cCC
Q 009597 265 HVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP------YVVKLN-PDD 337 (531)
Q Consensus 265 ~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~------~~~~~~-~~~ 337 (531)
.|.+++. .|+.+.++.=-.+.|.++.|+.+. .|+....||.++++|+. |+. .+..+... .+..+. ...
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccC
Confidence 3666654 466666654334899999999865 46677789999999986 333 33222211 111111 122
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCc-eeEEEc---c-----cCC-CeeE-EEEecCCCEEEEEeCCCCEEEEEcCCCeEEE
Q 009597 338 DKQNILLAGMSDKKIVQWDMNTKE-ITQEYD---Q-----HLG-AVNT-ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 406 (531)
Q Consensus 338 ~~~~~l~sg~~dg~I~iwd~~t~~-~~~~~~---~-----h~~-~I~~-l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 406 (531)
..+ ++.-..++.|.+..--... ..+.+. . |.. .+.. ..++.+....+....++.+.+.+-.....
T Consensus 137 ~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 137 KNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred CCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 222 3333344555444322211 111111 0 000 0111 22344444555555555555444322111
Q ss_pred EeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCc
Q 009597 407 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 445 (531)
Q Consensus 407 ~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~ 445 (531)
+ ...+++..+++||+++++|.-..+|.+.|.+..-.
T Consensus 213 -i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 213 -I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred -c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 1 13468999999999999999999999998876544
No 368
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.06 E-value=0.061 Score=54.91 Aligned_cols=221 Identities=15% Similarity=0.124 Sum_probs=114.1
Q ss_pred ccCCCEEEEE---------ecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCcee
Q 009597 293 CNDGTKFLTA---------SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 363 (531)
Q Consensus 293 spdg~~l~s~---------s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~ 363 (531)
|||+++++.. +..+.+.|+|+++++...............++|++ +.++.. .++.|.+++..++..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g---~~~~~v-~~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDG---KYIAFV-RDNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSS---TEEEEE-ETTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCC---CeeEEE-ecCceEEEECCCCCeE
Confidence 5778776653 23467999999998776655554556677777764 344444 4688999998777544
Q ss_pred EEE-cc-------c---------CCCeeEEEEecCCCEEEEEeCC-CCEEEEEc---CCCeEEEEeeCCCCCCccEEEEe
Q 009597 364 QEY-DQ-------H---------LGAVNTITFVDSNRRFVTSSDD-KSLRVWEF---GIPVVIKYISEPHMHSMPSISLH 422 (531)
Q Consensus 364 ~~~-~~-------h---------~~~I~~l~~sp~~~~l~s~s~D-g~I~iwd~---~~~~~~~~~~~~~~~~v~~v~~s 422 (531)
+.- .+ - .+.-..+.|+|++++|+....| ..|..+.+ ..... .--.+..+.+-
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YP 149 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------QYPEVESIRYP 149 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------cCCcccccccC
Confidence 322 11 0 1234678899999998876543 34444432 11100 00012222221
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCcceeceeeee-cCCccccceEEEEEcCCCCEEEEE--eCC---CcEEEEECCCCeEEE
Q 009597 423 PNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVAGYACQVNFSPDGRFVMSG--DGE---GKCWFWDWKSCKVFR 496 (531)
Q Consensus 423 p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~sg--s~d---g~I~iwd~~~~~~~~ 496 (531)
.-|.-... -.+.|+|+.++.... +... .......++..+.|++++..|+.. +.+ ..+.++|..+++.-.
T Consensus 150 k~G~~np~----v~l~v~~~~~~~~~~-~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~ 224 (353)
T PF00930_consen 150 KAGDPNPR----VSLFVVDLASGKTTE-LDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV 224 (353)
T ss_dssp BTTS---E----EEEEEEESSSTCCCE-E---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred CCCCcCCc----eEEEEEECCCCcEEE-eeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence 11211111 136678887764321 1111 011225678889999999844433 222 246677887664433
Q ss_pred Eeec-cCCcE---EEEEEe-cCCCCEEEEEeCCCCEEe
Q 009597 497 TLKC-HEGVC---IGCEWH-PLEQSKVATCGWDGLIKY 529 (531)
Q Consensus 497 ~~~~-h~~~V---~~v~~~-p~~~~~l~t~s~Dg~I~i 529 (531)
.+.. ..+.| ....|. +.+..+|.....||--.|
T Consensus 225 ~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 225 VLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp EEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred EEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 2221 22221 244444 546666666667775444
No 369
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.05 E-value=0.051 Score=44.67 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=68.1
Q ss_pred EccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCC
Q 009597 333 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 412 (531)
Q Consensus 333 ~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 412 (531)
+.++.+..+-|++|+.|..|++|+- .+++.++..+ ..|.+++-... .+|+.+..+|+|-+|+-... +..+. .
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWRiK--S 79 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWRIK--S 79 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eeeec--c
Confidence 3445556688999999999999984 4667777644 66777777655 67999999999999986332 22222 3
Q ss_pred CCCccEEEEeC-CC---CEEEEEEcCCeEE
Q 009597 413 MHSMPSISLHP-NT---NWLAAQSLDNQIL 438 (531)
Q Consensus 413 ~~~v~~v~~sp-~~---~~l~s~s~Dg~I~ 438 (531)
.+.+.++.+.. ++ .-|++|-.+|.|-
T Consensus 80 K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 80 KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44566666554 22 3688888888774
No 370
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.04 E-value=0.049 Score=56.71 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=84.9
Q ss_pred CeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEE-eCCCC--EEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCC
Q 009597 350 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS-SDDKS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN 426 (531)
Q Consensus 350 g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~-s~Dg~--I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 426 (531)
..|.++++.+++...... ..+.-..-.|+|+|++|+.+ ..||. |.+.|+......+ +.. ....-..-.|+|+|+
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~-~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN-GFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-ccc-CCccccCccCCCCCC
Confidence 469999998887555443 23334567899999987655 44665 6666777766433 322 222233678899999
Q ss_pred EEEEEEcC-C--eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCeEEE
Q 009597 427 WLAAQSLD-N--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGK--CWFWDWKSCKVFR 496 (531)
Q Consensus 427 ~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~--I~iwd~~~~~~~~ 496 (531)
+|+-.+.. | .|.+++....... + .++.+.. .. .-.|+|||++|+..+. +|. |.+.|+.++..++
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~~-r-iT~~~~~---~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQVT-R-LTFSGGG---NS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCcee-E-eeccCCC---Cc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 98876644 3 5666676654331 1 1222221 11 4679999999987774 344 6677776555333
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.026 Score=58.08 Aligned_cols=146 Identities=15% Similarity=0.224 Sum_probs=101.1
Q ss_pred CCCEE-EEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCc----EEEEeeCCCeEEEEECCCCce--eEEEc
Q 009597 295 DGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN----ILLAGMSDKKIVQWDMNTKEI--TQEYD 367 (531)
Q Consensus 295 dg~~l-~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~----~l~sg~~dg~I~iwd~~t~~~--~~~~~ 367 (531)
+.++| .++..-..|+-.|++.|+.+.....+..+..+.+.++..... .-+.|-.+..|.-||++-... +..-.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 33443 355555678888999999999998888877777776654322 245678899999999874322 22222
Q ss_pred ccC----CCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 009597 368 QHL----GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 443 (531)
Q Consensus 368 ~h~----~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~ 443 (531)
.|. ....|.+-..+ .++++||.+|.||+||- .+..-+....+...+|..|..+.+|++|++.+ +..+.+.++.
T Consensus 424 ~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 221 23455555444 48999999999999997 55555555556778999999999999987755 6666666643
No 372
>PHA02713 hypothetical protein; Provisional
Probab=96.95 E-value=0.079 Score=57.52 Aligned_cols=208 Identities=9% Similarity=0.011 Sum_probs=100.7
Q ss_pred eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC------CeEEEEECCCCceeEEEcccCCCeeEEEEec
Q 009597 307 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTKEITQEYDQHLGAVNTITFVD 380 (531)
Q Consensus 307 ~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d------g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp 380 (531)
.+..||..+++....-.............. ++.++++|+.+ ..+..||+.+..-...-.-....-......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 567788877654332211111111111111 23677777753 3577888877643211111111111112223
Q ss_pred CCCEEEEEeCCC-----CEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCC--------------------
Q 009597 381 SNRRFVTSSDDK-----SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-------------------- 435 (531)
Q Consensus 381 ~~~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg-------------------- 435 (531)
+++.++.||.++ ++..||..+......-..+....-.+++ .-++++.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCccccccccccccccccccccc
Confidence 677888888764 4788998876543221111111111222 22677777777653
Q ss_pred ---eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC------CcEEEEECCC---CeEEEEeeccCC
Q 009597 436 ---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE------GKCWFWDWKS---CKVFRTLKCHEG 503 (531)
Q Consensus 436 ---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d------g~I~iwd~~~---~~~~~~~~~h~~ 503 (531)
.+..||..+.. ......+.... .... + ..-+|++.+.|+.+ ..+..||..+ +..+..+.....
T Consensus 430 ~~~~ve~YDP~td~-W~~v~~m~~~r--~~~~-~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 430 SSNKVIRYDTVNNI-WETLPNFWTGT--IRPG-V-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccceEEEECCCCCe-EeecCCCCccc--ccCc-E-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 46778776532 11111111110 0111 1 22346666777654 2467888876 334444443333
Q ss_pred cEEEEEEecCCCCEEEEEeCCC
Q 009597 504 VCIGCEWHPLEQSKVATCGWDG 525 (531)
Q Consensus 504 ~V~~v~~~p~~~~~l~t~s~Dg 525 (531)
....+++ ++.+.++||.||
T Consensus 505 ~~~~~~~---~~~iyv~Gg~~~ 523 (557)
T PHA02713 505 ALHTILH---DNTIMMLHCYES 523 (557)
T ss_pred cceeEEE---CCEEEEEeeecc
Confidence 3323333 668888999888
No 373
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.87 E-value=0.3 Score=52.65 Aligned_cols=199 Identities=11% Similarity=0.077 Sum_probs=118.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEE---EEccCC----CCCcEEEEeeCCCeEEEEECCCCceeEEEcc
Q 009597 296 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV---KLNPDD----DKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 368 (531)
Q Consensus 296 g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~---~~~~~~----~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~ 368 (531)
+..|+.++.++.|.-.|..+|+.+..+......... +..... -.+..++.++.++.|..+|..+++.+-....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 346777777889999999999999887643221110 000000 0123577888999999999999998876643
Q ss_pred cC----CCeeEEEEecCCCEEEEEe------CCCCEEEEEcCCCeEEEEeeCCCCC------------------------
Q 009597 369 HL----GAVNTITFVDSNRRFVTSS------DDKSLRVWEFGIPVVIKYISEPHMH------------------------ 414 (531)
Q Consensus 369 h~----~~I~~l~~sp~~~~l~s~s------~Dg~I~iwd~~~~~~~~~~~~~~~~------------------------ 414 (531)
.. ..+.+--..-++ .+++++ .+|.|..+|.++++.+-........
T Consensus 149 ~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred ccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 21 112111111134 444443 2688999999998776554321110
Q ss_pred ------Cc-cEEEEeCCCCEEEEEEcC-----C-----------eEEEEEcCCcceeceeeeecCCc----cccceEEEE
Q 009597 415 ------SM-PSISLHPNTNWLAAQSLD-----N-----------QILIYSTRERFQLNKKKRFAGHI----VAGYACQVN 467 (531)
Q Consensus 415 ------~v-~~v~~sp~~~~l~s~s~D-----g-----------~I~iwd~~~~~~~~~~~~~~~~~----~~~~v~~l~ 467 (531)
.+ ..+++.|...++..+..+ + .|.-.|+++++..-..+...... ......-+.
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD 307 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence 11 134666666666665522 1 56677787776654444322110 001111133
Q ss_pred EcCCCC---EEEEEeCCCcEEEEECCCCeEE
Q 009597 468 FSPDGR---FVMSGDGEGKCWFWDWKSCKVF 495 (531)
Q Consensus 468 ~spdg~---~l~sgs~dg~I~iwd~~~~~~~ 495 (531)
+..+|+ .|+.+..+|.+++.|-.+|+++
T Consensus 308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 445776 7889999999999999999986
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.86 E-value=0.52 Score=46.01 Aligned_cols=217 Identities=14% Similarity=0.125 Sum_probs=110.9
Q ss_pred cCCCEEEEEecCCeEEEEeCCC-CcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEE------
Q 009597 294 NDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY------ 366 (531)
Q Consensus 294 pdg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~------ 366 (531)
..++.|+.|..+| |.++++.. ......... ..+.-+.+.+. - +++++- .|+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~-~~I~ql~vl~~--~-~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL-SSITQLSVLPE--L-NLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec-ceEEEEEEecc--c-CEEEEE-cCCccEEEEchhhcccccccccccc
Confidence 3577899999888 89999833 333332222 22333333332 2 223333 3599999998754433311
Q ss_pred --------cccCCCeeEEE--EecCCCEEEEEeCCCCEEEEEcCCC-----eEEEEeeCCCCCCccEEEEeCCCCEEEEE
Q 009597 367 --------DQHLGAVNTIT--FVDSNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHPNTNWLAAQ 431 (531)
Q Consensus 367 --------~~h~~~I~~l~--~sp~~~~l~s~s~Dg~I~iwd~~~~-----~~~~~~~~~~~~~v~~v~~sp~~~~l~s~ 431 (531)
......+...+ -...+...+.....++|.+|.+... ...+.+. -...+.+++|. ++.|+.|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CCEEEEE
Confidence 11122333333 1134445555555668999988653 3444444 34778889988 5667776
Q ss_pred EcCCeEEEEEcCCcceeceeeeecCCc--------cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--Eeecc
Q 009597 432 SLDNQILIYSTRERFQLNKKKRFAGHI--------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLKCH 501 (531)
Q Consensus 432 s~Dg~I~iwd~~~~~~~~~~~~~~~~~--------~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~--~~~~h 501 (531)
..+ ...+.|+.++...... ...... ....+..+. -+++.+|++-+ ..-.+.|. .|+..+ .+.-.
T Consensus 155 ~~~-~f~~idl~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~~--~~g~fv~~-~G~~~r~~~i~W~ 228 (275)
T PF00780_consen 155 TSK-GFYLIDLNTGSPSELL-DPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCYD--NIGVFVNK-NGEPSRKSTIQWS 228 (275)
T ss_pred eCC-ceEEEecCCCCceEEe-CccCCcchhhhcccCCCceEEEE-eCCceEEEEec--ceEEEEcC-CCCcCcccEEEcC
Confidence 644 4778888854332111 111110 011222223 33466776542 23333343 343332 33322
Q ss_pred CCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 502 EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 502 ~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
. .+..+++.. .+|+..+.+ .|.||+
T Consensus 229 ~-~p~~~~~~~---pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 229 S-APQSVAYSS---PYLIAFSSN-SIEVRS 253 (275)
T ss_pred C-chhEEEEEC---CEEEEECCC-EEEEEE
Confidence 2 345565543 366666544 477764
No 375
>PHA02713 hypothetical protein; Provisional
Probab=96.81 E-value=0.14 Score=55.61 Aligned_cols=200 Identities=10% Similarity=0.016 Sum_probs=99.2
Q ss_pred CCCEEEEEecC------CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCC-----eEEEEECCCCcee
Q 009597 295 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKEIT 363 (531)
Q Consensus 295 dg~~l~s~s~D------g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~I~iwd~~t~~~~ 363 (531)
++..++.||.+ ..+..||..+......-.............. ++.+.+.|+.++ .+..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56667777754 3467788777654322111111111111111 236777887654 4788998765432
Q ss_pred E--EEcccCCCeeEEEEecCCCEEEEEeCCC-----------------------CEEEEEcCCCeEEEEeeCCCCCCccE
Q 009597 364 Q--EYDQHLGAVNTITFVDSNRRFVTSSDDK-----------------------SLRVWEFGIPVVIKYISEPHMHSMPS 418 (531)
Q Consensus 364 ~--~~~~h~~~I~~l~~sp~~~~l~s~s~Dg-----------------------~I~iwd~~~~~~~~~~~~~~~~~v~~ 418 (531)
. .+.........+. -+++.++.|+.++ .+..||..+.+....-..+....-.+
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 2 1111111111222 2677778887653 46778877765432211111111122
Q ss_pred EEEeCCCCEEEEEEcC------CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCC--cEEEEECC
Q 009597 419 ISLHPNTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWK 490 (531)
Q Consensus 419 v~~sp~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg--~I~iwd~~ 490 (531)
++. -++++.+.|+.+ ..+..||..+.........+...... ...+. -+|++.++|+.+| .+-.||..
T Consensus 459 ~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 459 VVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHTIL--HDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--ceeEE--ECCEEEEEeeecceeehhhcCcc
Confidence 222 256777777754 24677887751112222222222111 11122 2678888998887 67778877
Q ss_pred CCeEEEEeeccCC
Q 009597 491 SCKVFRTLKCHEG 503 (531)
Q Consensus 491 ~~~~~~~~~~h~~ 503 (531)
+.+-......|..
T Consensus 534 ~~~W~~~~~~~~~ 546 (557)
T PHA02713 534 TYEWNHICHQHSN 546 (557)
T ss_pred cccccchhhhcCC
Confidence 7665444444443
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0056 Score=63.94 Aligned_cols=91 Identities=8% Similarity=0.049 Sum_probs=73.9
Q ss_pred eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCee-EEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEE
Q 009597 329 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN-TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 407 (531)
Q Consensus 329 ~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~-~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 407 (531)
..+.|+| ...+++.+..+|.|.+..++ .+.+.++..|...++ +++|.|+|+.|+.|-.||+|++.|+.++..+..
T Consensus 24 ~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 24 KRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 3344444 44689999999999999988 778888887877777 999999999999999999999999999877766
Q ss_pred eeCCCCCCccEEEEeC
Q 009597 408 ISEPHMHSMPSISLHP 423 (531)
Q Consensus 408 ~~~~~~~~v~~v~~sp 423 (531)
........|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 4333556778888864
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.78 E-value=0.79 Score=46.96 Aligned_cols=215 Identities=14% Similarity=0.218 Sum_probs=102.9
Q ss_pred CeeeEEe-cCcc-CceEEEEEc-----------cCCCEEEEEe-cCCeEEEEeCCC----CcEEEEccCC--------Cc
Q 009597 274 GKCMRTY-MGHS-KAVRDISFC-----------NDGTKFLTAS-YDKNIKYWDTET----GQVIRTFSTG--------KI 327 (531)
Q Consensus 274 ~~~~~~l-~gH~-~~V~~l~fs-----------pdg~~l~s~s-~Dg~I~vWd~~t----~~~i~~~~~~--------~~ 327 (531)
++.++.+ ..|. ......-|+ .+.++|+..+ ..+.|.|.|+.+ .+..+++... ..
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 4555554 4454 466666665 1345676666 678999999874 3445555321 11
Q ss_pred ceEEEEccCCCCCcEEEEeeC------CCeEEEEECCCCceeEEEcccC---CCeeEEEEecCCCEEEEEeC--------
Q 009597 328 PYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHL---GAVNTITFVDSNRRFVTSSD-------- 390 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~l~sg~~------dg~I~iwd~~t~~~~~~~~~h~---~~I~~l~~sp~~~~l~s~s~-------- 390 (531)
+..+.+.+ .+.+++++.. -|-+.++|-++.++........ .--..+-|.|..+.++|+..
T Consensus 132 PHT~Hclp---~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~ 208 (461)
T PF05694_consen 132 PHTVHCLP---DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEK 208 (461)
T ss_dssp EEEEEE-S---S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT
T ss_pred CceeeecC---CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhccc
Confidence 12222222 3356666532 3578889988888877775433 23456788898888888652
Q ss_pred ------------CCCEEEEEcCCCeEEEEeeCCCCCC-ccEEEEeCC--CCE-EEEEEcCCeEEEEEc-CCcc-eeceee
Q 009597 391 ------------DKSLRVWEFGIPVVIKYISEPHMHS-MPSISLHPN--TNW-LAAQSLDNQILIYST-RERF-QLNKKK 452 (531)
Q Consensus 391 ------------Dg~I~iwd~~~~~~~~~~~~~~~~~-v~~v~~sp~--~~~-l~s~s~Dg~I~iwd~-~~~~-~~~~~~ 452 (531)
..++.+||+...+.++.+..+..+. ...+.|..+ ..+ ++.+...++|..|-- ..+. ....+.
T Consensus 209 Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi 288 (461)
T PF05694_consen 209 GFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVI 288 (461)
T ss_dssp ---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEE
T ss_pred CCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEE
Confidence 4579999999999999987765543 446776543 333 444445556665543 2221 111111
Q ss_pred eecC-----C---c-------cccceEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 009597 453 RFAG-----H---I-------VAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKS 491 (531)
Q Consensus 453 ~~~~-----~---~-------~~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~ 491 (531)
.+.. - . ....++.|.+|.|.++|..+. ..|.|+.||+..
T Consensus 289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 1111 1 0 135578899999999998776 789999999975
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.005 Score=56.79 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccC-CCee
Q 009597 296 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVN 374 (531)
Q Consensus 296 g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~-~~I~ 374 (531)
+..++.|+.+|.|.+|...-...+..........+.+..+......+.++++.+|.|+.|++.-.+.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 346889999999999987632222222222333344455555556789999999999999999888877777777 5555
Q ss_pred EEEEecCCCEEEEE--eCCCCEEEEEcCC
Q 009597 375 TITFVDSNRRFVTS--SDDKSLRVWEFGI 401 (531)
Q Consensus 375 ~l~~sp~~~~l~s~--s~Dg~I~iwd~~~ 401 (531)
....+..++.+..+ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555566666666 6666677776654
No 379
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.74 E-value=0.58 Score=52.42 Aligned_cols=202 Identities=11% Similarity=0.162 Sum_probs=119.2
Q ss_pred CCEEEEEecCCeEEEEeCCCCcEEEEccCCCcce---------EEEEccC-------------CCCCcEEEEeeCCCeEE
Q 009597 296 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY---------VVKLNPD-------------DDKQNILLAGMSDKKIV 353 (531)
Q Consensus 296 g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~---------~~~~~~~-------------~~~~~~l~sg~~dg~I~ 353 (531)
+..|+.|+.++.|.-.|..+|+.+..+....... -+.+... ......++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4467778888999999999999988876543211 0111110 01234788899999999
Q ss_pred EEECCCCceeEEEcccCCCee-------------EEEEec--CCCEEEEEeC----------CCCEEEEEcCCCeEEEEe
Q 009597 354 QWDMNTKEITQEYDQHLGAVN-------------TITFVD--SNRRFVTSSD----------DKSLRVWEFGIPVVIKYI 408 (531)
Q Consensus 354 iwd~~t~~~~~~~~~h~~~I~-------------~l~~sp--~~~~l~s~s~----------Dg~I~iwd~~~~~~~~~~ 408 (531)
-.|.++|+.+..+... +.|. .+.-.| .+..+++++. +|.|+-+|.++++.+-..
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999998776421 2111 111112 2345666643 688999999999877665
Q ss_pred eCCC----------------CCCc-cEEEEeCCCCEEEEEE------------------cCCeEEEEEcCCcceeceeee
Q 009597 409 SEPH----------------MHSM-PSISLHPNTNWLAAQS------------------LDNQILIYSTRERFQLNKKKR 453 (531)
Q Consensus 409 ~~~~----------------~~~v-~~v~~sp~~~~l~s~s------------------~Dg~I~iwd~~~~~~~~~~~~ 453 (531)
.... ...+ ...++.+...+++.+. ..+.|.-.|..+++..-..+.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 4210 0011 2344555444444322 124566666766655443332
Q ss_pred ecCCcc-----ccceEEEEEcC-CCC---EEEEEeCCCcEEEEECCCCeEEEEee
Q 009597 454 FAGHIV-----AGYACQVNFSP-DGR---FVMSGDGEGKCWFWDWKSCKVFRTLK 499 (531)
Q Consensus 454 ~~~~~~-----~~~v~~l~~sp-dg~---~l~sgs~dg~I~iwd~~~~~~~~~~~ 499 (531)
.. |.. .....-+.+.. +|+ .|+.++.+|.++++|-++|+.+...+
T Consensus 433 ~~-hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VH-HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cC-CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 11 100 01111123333 563 78999999999999999999887653
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.67 E-value=0.2 Score=54.45 Aligned_cols=190 Identities=8% Similarity=0.055 Sum_probs=99.1
Q ss_pred cCceEEEEEccCCCEEEEEe------cCC--eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEE----------
Q 009597 284 SKAVRDISFCNDGTKFLTAS------YDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA---------- 345 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s------~Dg--~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~s---------- 345 (531)
...+.+.+++|+|+.++... .|+ .|.+++. .+.. ..+..+.....-.|.+++. .+.++
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~~~t~PsWspDG~--~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGHSLTRPSWSLDAD--AVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCCCCCCceECCCCC--ceEEEecCcceEEEe
Confidence 34688999999999877554 244 4555554 2222 3333333334444555422 11111
Q ss_pred -eeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEE---EEcCCCe-EE---EEeeCCCCCCcc
Q 009597 346 -GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV---WEFGIPV-VI---KYISEPHMHSMP 417 (531)
Q Consensus 346 -g~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~i---wd~~~~~-~~---~~~~~~~~~~v~ 417 (531)
....+.+.+.++..++..+ ...+.|..+.|+|||.+++... ++.|.+ -....+. .+ ..+.......+.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 1123456555666555433 3346799999999999988766 466766 3333333 11 112222333468
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 009597 418 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 486 (531)
Q Consensus 418 ~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~i 486 (531)
++.|..++.++ ++..++...+|.+.-.-.... .+.+......+..|+=+++ -|+..+.+|.+.+
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~--~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD--ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEecCCcccc--ccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 89999988855 555555444554332111111 1122212233545555542 4555666664433
No 381
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.31 Score=46.97 Aligned_cols=163 Identities=9% Similarity=0.176 Sum_probs=108.1
Q ss_pred ecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC--cceEEEEccCCCCCcEEEEeeCCCeEEEEEC
Q 009597 280 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 357 (531)
Q Consensus 280 l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~ 357 (531)
+.|-...|.++.|+|+.+.|++......-.||=...|+.++++.... .+..+.+.- ++.++++--.++.+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig---~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG---GNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec---CCEEEEEehhcceEEEEEE
Confidence 34555569999999999999988888888888888999999886543 222333332 2345566666778887776
Q ss_pred CCCceeEEE----------cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEE--eeCC-------CCCCccE
Q 009597 358 NTKEITQEY----------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY--ISEP-------HMHSMPS 418 (531)
Q Consensus 358 ~t~~~~~~~----------~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~--~~~~-------~~~~v~~ 418 (531)
.....+..+ ...+...-.++|.|..+.|+.+-.-.-+.||.+........ .... ....+.+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 544222111 11245677899999999999998888888887764321100 1000 1234778
Q ss_pred EEEeC-CCCEEEEEEcCCeEEEEEcCCc
Q 009597 419 ISLHP-NTNWLAAQSLDNQILIYSTRER 445 (531)
Q Consensus 419 v~~sp-~~~~l~s~s~Dg~I~iwd~~~~ 445 (531)
+.|++ .+.+|+.+..++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 88887 5666777777777777877653
No 382
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.65 E-value=0.78 Score=47.81 Aligned_cols=228 Identities=14% Similarity=0.214 Sum_probs=117.4
Q ss_pred CCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCC-----------eEEEEeCCCCcE--EEEccCC
Q 009597 259 GGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK-----------NIKYWDTETGQV--IRTFSTG 325 (531)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg-----------~I~vWd~~t~~~--i~~~~~~ 325 (531)
+|++...+++.+..+++.+..--... .-..+.|.++++.|+-...+. .|++|.+.+... ...+...
T Consensus 145 ~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~ 223 (414)
T PF02897_consen 145 GGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP 223 (414)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T
T ss_pred CCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec
Confidence 56666789999999997776432222 223499999988776655433 378888877643 2444443
Q ss_pred Ccce-EEEEccCCCCCcEEEEeeCC---CeEEEEECCCC----ceeEEEcccCCCeeEEEEecCCCEEEEEeC---CCCE
Q 009597 326 KIPY-VVKLNPDDDKQNILLAGMSD---KKIVQWDMNTK----EITQEYDQHLGAVNTITFVDSNRRFVTSSD---DKSL 394 (531)
Q Consensus 326 ~~~~-~~~~~~~~~~~~~l~sg~~d---g~I~iwd~~t~----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~---Dg~I 394 (531)
.... .+.+..+.++..+++..... ..|.+.++..+ .....+......+....-+..+.+++.+.. .+.|
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l 303 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRL 303 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EE
T ss_pred CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEE
Confidence 3333 44555555554555544433 35888888764 233334333344433333334445544433 3567
Q ss_pred EEEEcCCCeE---EEEeeCCCCC--CccEEEEeCCCCEEEEE-EcCC--eEEEEEcC-CcceeceeeeecCCccccceEE
Q 009597 395 RVWEFGIPVV---IKYISEPHMH--SMPSISLHPNTNWLAAQ-SLDN--QILIYSTR-ERFQLNKKKRFAGHIVAGYACQ 465 (531)
Q Consensus 395 ~iwd~~~~~~---~~~~~~~~~~--~v~~v~~sp~~~~l~s~-s~Dg--~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~ 465 (531)
...++..+.. ...+. ++.. .+..+.. .+.+|+.. ..++ .|+++++. ... ..... +.. .+.+..
T Consensus 304 ~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~-~~~~~-~p~---~g~v~~ 375 (414)
T PF02897_consen 304 VAVDLADPSPAEWWTVLI-PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKE-SREIP-LPE---AGSVSG 375 (414)
T ss_dssp EEEETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEE-EEEEE-SSS---SSEEEE
T ss_pred EEecccccccccceeEEc-CCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcE-Eeeec-CCc---ceEEec
Confidence 7778877642 22332 2444 3444443 34455544 4444 68888988 332 21111 111 233444
Q ss_pred EEEcCCCCEEEEE-e---CCCcEEEEECCCCeEE
Q 009597 466 VNFSPDGRFVMSG-D---GEGKCWFWDWKSCKVF 495 (531)
Q Consensus 466 l~~spdg~~l~sg-s---~dg~I~iwd~~~~~~~ 495 (531)
+...+++..+... + .-++++.||+.+++..
T Consensus 376 ~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 376 VSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5555555443322 2 2356888888887653
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.61 E-value=0.85 Score=45.15 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=81.4
Q ss_pred cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcC-Cc
Q 009597 367 DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ER 445 (531)
Q Consensus 367 ~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~-~~ 445 (531)
..-.+.+..+.-+++|+++++++.-....-||-....-.... .....+|.++.|.|++.+.++ ...|.|++=+.. ..
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEE-eCCcEEEEccCCCCc
Confidence 344577889999999998888876666677886543222222 235688999999999876664 488999888722 22
Q ss_pred ceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec---cCCcEEEEEEecCCCCEEEEEe
Q 009597 446 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 446 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~v~~~p~~~~~l~t~s 522 (531)
..... .........-.+..++|.+++...++|+. |.+. .....|+.-..... -...+..+.|.+ . ..-+..|
T Consensus 219 ~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~-~~gf~lG 293 (302)
T PF14870_consen 219 ETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVN-P-DKGFVLG 293 (302)
T ss_dssp EEE----B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEE-T-TEEEEE-
T ss_pred ccccc-ccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcC-C-CceEEEC
Confidence 11111 11111122233788999999887776654 4443 34455555444432 234578888876 3 3455567
Q ss_pred CCCCEEee
Q 009597 523 WDGLIKYW 530 (531)
Q Consensus 523 ~Dg~I~iW 530 (531)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78887655
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.015 Score=60.82 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=64.8
Q ss_pred CCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCcc-EEEEeCCCCEEEEEEcCCeEEEEEcCCcceec
Q 009597 371 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP-SISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449 (531)
Q Consensus 371 ~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 449 (531)
..|.-+.|+|.-..+|.+..+|.|.+..+. .+.+..+.. +...++ +++|.|+|+.|++|-.||+|++.|+..+..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 457788999999999999999999998887 555555543 444555 99999999999999999999999999886664
Q ss_pred e
Q 009597 450 K 450 (531)
Q Consensus 450 ~ 450 (531)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 3
No 385
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.43 E-value=1.3 Score=45.02 Aligned_cols=255 Identities=11% Similarity=0.105 Sum_probs=119.7
Q ss_pred eeeeecccCeeeEEecCcc-CceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcce-EEEEccCCCCCcEE
Q 009597 266 VEDKSTFHGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNIL 343 (531)
Q Consensus 266 i~~~~~~~~~~~~~l~gH~-~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~l 343 (531)
+...+..+++.. .|..+. .......++++++.|+-......|+-.|+++.+....+.....-. ...+....+. ..+
T Consensus 62 ly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~-t~~ 139 (386)
T PF14583_consen 62 LYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDC-TKL 139 (386)
T ss_dssp EEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTS-SEE
T ss_pred eEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCc-cEE
Confidence 445555555444 343332 334467778888877666666789999999987654443332211 2333333322 222
Q ss_pred EEee----------------------CCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEE-EeC---CC-CEEE
Q 009597 344 LAGM----------------------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT-SSD---DK-SLRV 396 (531)
Q Consensus 344 ~sg~----------------------~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s-~s~---Dg-~I~i 396 (531)
+..- ....|.-.|+.+|+....+. -...+..+.|+|....+++ |-. +. .-||
T Consensus 140 ~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~Ri 218 (386)
T PF14583_consen 140 VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRI 218 (386)
T ss_dssp EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SE
T ss_pred EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEE
Confidence 2111 12356667888887655554 4567889999996555554 432 22 1366
Q ss_pred EEcCC-CeEEEEeeC-CCCCCccEEEEeCCCCEEEEEEc-----CCeEEEEEcCCcceeceeeeecCCccccceEEEEEc
Q 009597 397 WEFGI-PVVIKYISE-PHMHSMPSISLHPNTNWLAAQSL-----DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 469 (531)
Q Consensus 397 wd~~~-~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~s~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 469 (531)
|-+++ +...+.+.. .....+..=-|.|+|..|.--+. +..|.-+|..++.... +... .....+..+
T Consensus 219 W~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~~~~------p~~~H~~ss 291 (386)
T PF14583_consen 219 WTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-LMEM------PWCSHFMSS 291 (386)
T ss_dssp EEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-EEEE-------SEEEEEE-
T ss_pred EEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE-EEeC------CceeeeEEc
Confidence 65543 222333322 12334555568888887765332 3356666776653321 1111 123346678
Q ss_pred CCCCEEEEEeCCC----------------cEEEEECCCCeEEEEe---------eccCC-cEEEEEEecCCCCEEEEEeC
Q 009597 470 PDGRFVMSGDGEG----------------KCWFWDWKSCKVFRTL---------KCHEG-VCIGCEWHPLEQSKVATCGW 523 (531)
Q Consensus 470 pdg~~l~sgs~dg----------------~I~iwd~~~~~~~~~~---------~~h~~-~V~~v~~~p~~~~~l~t~s~ 523 (531)
+||++++-=+.|. -|+++++..++..... .+|.. .=....|+|++..+|+++..
T Consensus 292 ~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 292 PDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T
T ss_pred CCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC
Confidence 8999886533331 4667888776643211 11111 12467999977778888888
Q ss_pred CCCEEee
Q 009597 524 DGLIKYW 530 (531)
Q Consensus 524 Dg~I~iW 530 (531)
.|...||
T Consensus 372 ~G~~~vY 378 (386)
T PF14583_consen 372 EGPPAVY 378 (386)
T ss_dssp TSS-EEE
T ss_pred CCCccEE
Confidence 8887665
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.39 E-value=0.18 Score=54.86 Aligned_cols=175 Identities=18% Similarity=0.152 Sum_probs=92.0
Q ss_pred CCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEe------CCC--CEEEEEcCCCeEEEEeeCCCCCCccEEE
Q 009597 349 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS------DDK--SLRVWEFGIPVVIKYISEPHMHSMPSIS 420 (531)
Q Consensus 349 dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s------~Dg--~I~iwd~~~~~~~~~~~~~~~~~v~~v~ 420 (531)
+|.+.-.+-..-..+....+....+...+++|+|+.++..- .|. .|.+++.... . ..+.. ......-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~lt~--g~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQVLE--GHSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eeeec--CCCCCCce
Confidence 56555544322222222223334678899999999877665 244 4555554332 2 33322 22488899
Q ss_pred EeCCCCEEEEEEcCCe-EEEEEcCCcceeceeeeecCC---ccccceEEEEEcCCCCEEEEEeCCCcEEE---EECCCCe
Q 009597 421 LHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWF---WDWKSCK 493 (531)
Q Consensus 421 ~sp~~~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~l~~spdg~~l~sgs~dg~I~i---wd~~~~~ 493 (531)
|+|+|..|++...... +++.+......+.....-.+. ...+.|..+.|||||..|+... +|.|++ -....|.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999988887754322 222221111111100000000 1134588899999999988766 467777 4434453
Q ss_pred -EE---EEee-ccCCcEEEEEEecCCCCEEEEEeCCCCEEee
Q 009597 494 -VF---RTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 494 -~~---~~~~-~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.+ ..+. .-...+.++.|.+ ++.++ .+..++.-.+|
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~ 522 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVW 522 (591)
T ss_pred eeecccEEeecccCCccccceEec-CCEEE-EEecCCCCceE
Confidence 11 1122 2233467899998 55544 44444433333
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.36 E-value=0.8 Score=47.32 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCc
Q 009597 462 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 504 (531)
Q Consensus 462 ~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 504 (531)
.+.+++.+|++++.++.+.-|.|.++|+.++..++.+++..+.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 3667999999999999999999999999999988888876653
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.21 E-value=1.4 Score=45.15 Aligned_cols=224 Identities=16% Similarity=0.188 Sum_probs=104.8
Q ss_pred ccCCCCCCCceeeeeecc----cCeeeEEecC---cc----CceEEEEEccCCCEEEEEecC------CeEEEEeCCCCc
Q 009597 255 KGNAGGEKGEHVEDKSTF----HGKCMRTYMG---HS----KAVRDISFCNDGTKFLTASYD------KNIKYWDTETGQ 317 (531)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~----~~~~~~~l~g---H~----~~V~~l~fspdg~~l~s~s~D------g~I~vWd~~t~~ 317 (531)
.+.+.+-....|.+.++. ..++.+++.. +. ..-..+..-|+|..++|+-.| |-+.+.|-++.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 344555666677777665 4566666654 22 222334444789888876332 568888988888
Q ss_pred EEEEccCCC--cceEEEEccCCCCCcEEEEee--------------------CCCeEEEEECCCCceeEEEcccCC--Ce
Q 009597 318 VIRTFSTGK--IPYVVKLNPDDDKQNILLAGM--------------------SDKKIVQWDMNTKEITQEYDQHLG--AV 373 (531)
Q Consensus 318 ~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~--------------------~dg~I~iwd~~t~~~~~~~~~h~~--~I 373 (531)
++....... ......|...+ ..+++++.. ...++.+||+.+.+.++++..... ..
T Consensus 169 v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred ccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 887775532 23333333332 335666543 346899999999999999976542 35
Q ss_pred eEEEEecC--CCE-EEEEeCCCCEEEEEc-CCCe----EEEEeeC--------CC--------CCCccEEEEeCCCCEEE
Q 009597 374 NTITFVDS--NRR-FVTSSDDKSLRVWEF-GIPV----VIKYISE--------PH--------MHSMPSISLHPNTNWLA 429 (531)
Q Consensus 374 ~~l~~sp~--~~~-l~s~s~Dg~I~iwd~-~~~~----~~~~~~~--------~~--------~~~v~~v~~sp~~~~l~ 429 (531)
..|.|..+ ..+ |+.+--..+|..|-- ..+. .+..+.. +. ..-|+.|.+|.+.++|.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 56777653 333 454444555555533 3321 1111211 01 13478899999999988
Q ss_pred EEE-cCCeEEEEEcCCcceeceeee-e-------------cCCccccceEEEEEcCCCCEEEEEe
Q 009597 430 AQS-LDNQILIYSTRERFQLNKKKR-F-------------AGHIVAGYACQVNFSPDGRFVMSGD 479 (531)
Q Consensus 430 s~s-~Dg~I~iwd~~~~~~~~~~~~-~-------------~~~~~~~~v~~l~~spdg~~l~sgs 479 (531)
+.+ ..|.|+.||+.+......... + .+....+...-+..|.||+.|...+
T Consensus 328 vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 766 579999999987544322211 1 1112223345588899999888765
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.29 Score=47.23 Aligned_cols=160 Identities=8% Similarity=0.053 Sum_probs=108.1
Q ss_pred ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcce
Q 009597 368 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 447 (531)
Q Consensus 368 ~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~ 447 (531)
+-...|++++|+|+.+.|.+......-.|+=...+..+..+....-+..-.+.+..++++.++-=.++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 34455999999999999999888888888877888888888766666777888888888888888888998887765432
Q ss_pred eceeee----ecCCcc-ccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-E--EEEeeccC-------CcEEEEEEec
Q 009597 448 LNKKKR----FAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-V--FRTLKCHE-------GVCIGCEWHP 512 (531)
Q Consensus 448 ~~~~~~----~~~~~~-~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~-~--~~~~~~h~-------~~V~~v~~~p 512 (531)
...... +..... ....-.++|+|....|+..-+-.-+.||.+.... . +.....+. ..|.++.|++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 221111 111111 2235569999999999888877777777665322 1 11111111 2467788888
Q ss_pred CCCCEEEEEeCCCCE
Q 009597 513 LEQSKVATCGWDGLI 527 (531)
Q Consensus 513 ~~~~~l~t~s~Dg~I 527 (531)
..+.+|+-+..++.+
T Consensus 243 ~~~~LLVLS~ESr~l 257 (316)
T COG3204 243 ITNSLLVLSDESRRL 257 (316)
T ss_pred CCCcEEEEecCCceE
Confidence 666666666555544
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.21 E-value=0.2 Score=54.46 Aligned_cols=218 Identities=11% Similarity=0.060 Sum_probs=114.1
Q ss_pred CCCEEEEEecC------CeEEEEeCCCCcEEEEccCC--CcceEEEEccCCCCCcEEEEeeCC------CeEEEEECCCC
Q 009597 295 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTK 360 (531)
Q Consensus 295 dg~~l~s~s~D------g~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~d------g~I~iwd~~t~ 360 (531)
.+.+++.||.+ ..+..+|..+++........ .....+.+. ++.+.++|+.+ .++..||.++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~----~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL----NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE----CCEEEEEccccCCCcccceEEEecCCCC
Confidence 45667777776 36888888887554433222 222222222 23688899988 36778888776
Q ss_pred ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCC-----EEEEEcCCCeEEEEeeCCCCCCccEEE-EeCCCCEEEEEEcC
Q 009597 361 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS-----LRVWEFGIPVVIKYISEPHMHSMPSIS-LHPNTNWLAAQSLD 434 (531)
Q Consensus 361 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~~~~~v~~v~-~sp~~~~l~s~s~D 434 (531)
+-...-.-.......-...-+|...++|+.||. |-.||..+.+....-. ......... ..-+|.+.++|+.+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred ceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcC
Confidence 633211111111111111126788899998864 6677776654322111 111222221 12268888888866
Q ss_pred C------eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCeE--EEEeecc
Q 009597 435 N------QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-----CWFWDWKSCKV--FRTLKCH 501 (531)
Q Consensus 435 g------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~-----I~iwd~~~~~~--~~~~~~h 501 (531)
+ ++..||..+..=. ....+... ..... + -.-++.+.+.|+.|+. |..||..+.+- +..+...
T Consensus 438 ~~~~~l~sve~YDP~t~~W~-~~~~M~~~--R~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWT-LIAPMNTR--RSGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred CCccccceEEEEcCCCCcee-ecCCcccc--cccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 4 5677877654211 11111111 01111 1 2235777788887763 67788776543 3223333
Q ss_pred CCcEEEEEEecCCCCEEEEEeCCCC
Q 009597 502 EGVCIGCEWHPLEQSKVATCGWDGL 526 (531)
Q Consensus 502 ~~~V~~v~~~p~~~~~l~t~s~Dg~ 526 (531)
...+-.+.+ ++.+.+.||.||.
T Consensus 513 rs~~g~~~~---~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 513 RSAVGVVVL---GGKLYAVGGFDGN 534 (571)
T ss_pred cccccEEEE---CCEEEEEecccCc
Confidence 333323333 6678888888875
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.02 Score=63.52 Aligned_cols=98 Identities=19% Similarity=0.334 Sum_probs=74.4
Q ss_pred CCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCC
Q 009597 424 NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 503 (531)
Q Consensus 424 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 503 (531)
.+.+++.|+..|.|..+|....-. . ...+....+.|.+++|+.+|.+++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~--~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--P--LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--h--hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 456788999999999999876421 1 133344467799999999999999999999999999999999998876665
Q ss_pred cEEEE---EEecCCCCEEEEEeCCCC
Q 009597 504 VCIGC---EWHPLEQSKVATCGWDGL 526 (531)
Q Consensus 504 ~V~~v---~~~p~~~~~l~t~s~Dg~ 526 (531)
+..++ .|.. +++.++++..-|.
T Consensus 174 p~t~vi~v~~t~-~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTS-QNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeC-CCcEEEEccCCCc
Confidence 54444 4444 4557777776665
No 392
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.18 E-value=1.3 Score=49.30 Aligned_cols=235 Identities=13% Similarity=0.158 Sum_probs=131.4
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCc--
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-- 361 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~-- 361 (531)
..++.=-.|+..++.-+-|..|+-..+|.....-+...+.......++.++...-. ..++.+ ..+.+++.-+..-+
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~-d~l~~~-~~~~l~i~tid~iqkl 706 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYP-DSLASA-NGGALTIGTIDEIQKL 706 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCC-ceEEEe-cCCceEEEEecchhhc
Confidence 44666666666544333334467777776544444444444444444444443322 223333 34556665553321
Q ss_pred eeEEEcccCCCeeEEEEecCCCEEEEEeC-----------C---CCEEEEEcCCCeEEEEeeCCCC---CCccEEEEeCC
Q 009597 362 ITQEYDQHLGAVNTITFVDSNRRFVTSSD-----------D---KSLRVWEFGIPVVIKYISEPHM---HSMPSISLHPN 424 (531)
Q Consensus 362 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-----------D---g~I~iwd~~~~~~~~~~~~~~~---~~v~~v~~sp~ 424 (531)
.++++..+ .....+++.+....+.+.+. . ..++++|-++.+.+....-... .++.++.|..+
T Consensus 707 ~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d 785 (1096)
T KOG1897|consen 707 HIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDD 785 (1096)
T ss_pred ceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCC
Confidence 23333322 34456666664444444332 1 1367777777665544332222 23555568776
Q ss_pred -CCEEEEEE----------cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 009597 425 -TNWLAAQS----------LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 493 (531)
Q Consensus 425 -~~~l~s~s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 493 (531)
+.++++|+ ..|.|.||.......+ +....+...+.+..+.. -+|++||.- ...|++|+|.+.+
T Consensus 786 ~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L---~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~ 859 (1096)
T KOG1897|consen 786 PNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL---ELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTER 859 (1096)
T ss_pred CceEEEEEEEeeccCCCCcccceEEEEEEecCCce---eeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccc
Confidence 67777776 3488899887763333 33344444455544432 257776554 4589999999998
Q ss_pred EEEEeeccCCcEEEEEEecCCCCEEEEEeCCCCEE
Q 009597 494 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 528 (531)
Q Consensus 494 ~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~ 528 (531)
.++.-..|..++..+...- .+..++.|..=+.|.
T Consensus 860 eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 860 ELRIECNISNPIIALDLQV-KGDEIAVGDLMRSIT 893 (1096)
T ss_pred eehhhhcccCCeEEEEEEe-cCcEEEEeeccceEE
Confidence 7777777788888887777 677788776655544
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.019 Score=63.64 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=74.0
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccc
Q 009597 381 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 460 (531)
Q Consensus 381 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 460 (531)
.+..++.|++.|.+-..|+...-...........+|++++|+.+|..++.|-.+|.|.+||+..+..+..+. ..++...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccc
Confidence 456788899999999998876522112223357799999999999999999999999999998876554333 3344333
Q ss_pred cceEEEEEcCCCCEEEEEeCCCc
Q 009597 461 GYACQVNFSPDGRFVMSGDGEGK 483 (531)
Q Consensus 461 ~~v~~l~~spdg~~l~sgs~dg~ 483 (531)
.+..+.+..++..+++++..|.
T Consensus 177 -~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 -GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred -eEEEEEEeCCCcEEEEccCCCc
Confidence 3555666667778888888886
No 394
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.12 E-value=0.00078 Score=72.60 Aligned_cols=100 Identities=17% Similarity=0.247 Sum_probs=59.0
Q ss_pred ecCccCceEEEEEcc-CCCEEEEEecCCeEEEEeCC--CCcEEEEc------cCCCcceEEEEccCCCCCcEEEEeeCCC
Q 009597 280 YMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE--TGQVIRTF------STGKIPYVVKLNPDDDKQNILLAGMSDK 350 (531)
Q Consensus 280 l~gH~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~--t~~~i~~~------~~~~~~~~~~~~~~~~~~~~l~sg~~dg 350 (531)
++|..+.|-.|.|-. +-..++ -.-|.+.||++. .|+....+ ..+..+..+.|++.-...-++..+..++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 345566777888743 222222 223678899874 33322211 1234456677777666667788888899
Q ss_pred eEEEEECCCCceeEEEcccCCCeeEEEEecCC
Q 009597 351 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 382 (531)
Q Consensus 351 ~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~ 382 (531)
.|++..+.+... ..+..|...+..++|...|
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhc
Confidence 999887765432 3344577777766654433
No 395
>PHA03098 kelch-like protein; Provisional
Probab=95.98 E-value=0.45 Score=51.49 Aligned_cols=191 Identities=12% Similarity=0.054 Sum_probs=91.7
Q ss_pred CCCEEEEEecCC------eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC-----CeEEEEECCCCcee
Q 009597 295 DGTKFLTASYDK------NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEIT 363 (531)
Q Consensus 295 dg~~l~s~s~Dg------~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~I~iwd~~t~~~~ 363 (531)
++..++.||.++ .+..||..+.+....-.............. ++.+++.|+.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455667776543 577788877665332111111111111111 23677777765 35778888765432
Q ss_pred EEEcccCCCeeEEEEecCCCEEEEEeCC------CCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcC---
Q 009597 364 QEYDQHLGAVNTITFVDSNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--- 434 (531)
Q Consensus 364 ~~~~~h~~~I~~l~~sp~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~D--- 434 (531)
..-.............-+++.++.|+.+ ..+..||..+......-..+....-.+++. .++.+++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISYID 450 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCccCCC
Confidence 2111111111111122356777777732 357889987765433221111111222322 356666776643
Q ss_pred -----CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCe
Q 009597 435 -----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 493 (531)
Q Consensus 435 -----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~~ 493 (531)
..+.+||..+..= .......... .....+.+ ++.+++.|+.+ ..|.+||..+.+
T Consensus 451 ~~~~~~~v~~yd~~~~~W-~~~~~~~~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKW-TELSSLNFPR--INASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceEEEecCCCCce-eeCCCCCccc--ccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2378888776421 1111111111 11111222 67777777654 468888877654
No 396
>PRK10115 protease 2; Provisional
Probab=95.94 E-value=3.7 Score=45.83 Aligned_cols=112 Identities=11% Similarity=0.104 Sum_probs=64.8
Q ss_pred CceEEEEEccCCCEEEEEec-----CCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC-----CeEEE
Q 009597 285 KAVRDISFCNDGTKFLTASY-----DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQ 354 (531)
Q Consensus 285 ~~V~~l~fspdg~~l~s~s~-----Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~I~i 354 (531)
-.+..+.++|||++|+-+.. ...|++-|+.+|..+...-.. ....+.|.++ ...++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~~~~~w~~D--~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VEPSFVWAND--SWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cceEEEEeeC--CCEEEEEEecCCCCCCCEEEE
Confidence 35778899999998775432 236889999888643222111 1233555443 33455554422 47888
Q ss_pred EECCCC--ceeEEEcccCCCee-EEEEecCCCEEEEEeC---CCCEEEEEc
Q 009597 355 WDMNTK--EITQEYDQHLGAVN-TITFVDSNRRFVTSSD---DKSLRVWEF 399 (531)
Q Consensus 355 wd~~t~--~~~~~~~~h~~~I~-~l~~sp~~~~l~s~s~---Dg~I~iwd~ 399 (531)
+++.++ +-...+........ .+..+.++++++..+. ++.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 898887 43444443333333 2333447777654443 356888885
No 397
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.88 E-value=1.7 Score=43.21 Aligned_cols=183 Identities=14% Similarity=0.242 Sum_probs=99.5
Q ss_pred CCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC----CC
Q 009597 338 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP----HM 413 (531)
Q Consensus 338 ~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~----~~ 413 (531)
..+.++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+..|+++.. -+.+++...+..+..+... ..
T Consensus 35 ~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~ 110 (307)
T COG3386 35 DRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPL 110 (307)
T ss_pred CCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCc
Confidence 3445677777778888888876542 2232 2344566666556666666543 2677777655443333221 22
Q ss_pred CCccEEEEeCCCCEEEEEEc-----------CCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC-
Q 009597 414 HSMPSISLHPNTNWLAAQSL-----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE- 481 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d- 481 (531)
.....+...|+|.+.++... -|.|+.++. .+... +....+. ...+.|+||||++.|+.....
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~---~l~~~~~--~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVV---RLLDDDL--TIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEE---EeecCcE--EecCceEECCCCCEEEEEeCCC
Confidence 45667888999887665444 133444443 22222 2222222 234569999999888877654
Q ss_pred CcEEEEECCC--C----e-EEEEeeccCCcEEEEEEecCCCCEEEEEeCCC-CEEeeC
Q 009597 482 GKCWFWDWKS--C----K-VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG-LIKYWD 531 (531)
Q Consensus 482 g~I~iwd~~~--~----~-~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg-~I~iWD 531 (531)
+.|+-|++.. + + ....+..+.+..-.++... ++.+.+++.++| .|.+|+
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEEC
Confidence 7788887752 1 1 1122222334444555555 444443444443 566553
No 398
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.73 E-value=1.3 Score=42.71 Aligned_cols=161 Identities=9% Similarity=0.100 Sum_probs=92.0
Q ss_pred CCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCe-EEEEECCCCceeEEEcccCCC--eeEEEEecCCCEEEEEeCC
Q 009597 315 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK-IVQWDMNTKEITQEYDQHLGA--VNTITFVDSNRRFVTSSDD 391 (531)
Q Consensus 315 t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-I~iwd~~t~~~~~~~~~h~~~--I~~l~~sp~~~~l~s~s~D 391 (531)
.|+++..........-+.+++..+ .-++.+-.-|+ ..++|....+...++....+. .-.-.|+|+|.+|...-.|
T Consensus 57 aGk~v~~~~lpaR~Hgi~~~p~~~--ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 57 AGKIVFATALPARGHGIAFHPALP--RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred CCceeeeeecccccCCeecCCCCc--ceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 344554444444444555666543 34555544444 568898888766665432221 1234799999999887543
Q ss_pred -----CCEEEEEcCCCeE-EEEeeCCCCCCccEEEEeCCCCEEEEEEc------------------CCeEEEEEcCCcce
Q 009597 392 -----KSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSL------------------DNQILIYSTRERFQ 447 (531)
Q Consensus 392 -----g~I~iwd~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~l~s~s~------------------Dg~I~iwd~~~~~~ 447 (531)
|.|-|||.+..-. +-.+ ..|.-....+.+.++|+.++.+.- .-.+.+.|..++..
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~l 213 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL 213 (366)
T ss_pred CCCCCceEEEEecccccceeccc-ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccch
Confidence 6799999985422 2222 235555678899999999887642 12344444444433
Q ss_pred eceeeeecCCccccceEEEEEcCCCCEEEEEe
Q 009597 448 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 479 (531)
Q Consensus 448 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 479 (531)
+.+ ..+......-.+..++..+||..++.+-
T Consensus 214 iek-h~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 214 IEK-HTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred hhh-ccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 322 1222112233477788888887665443
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.64 E-value=5 Score=45.02 Aligned_cols=142 Identities=13% Similarity=0.178 Sum_probs=85.7
Q ss_pred CeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCC---C-
Q 009597 350 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN---T- 425 (531)
Q Consensus 350 g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~---~- 425 (531)
..|++++-. ..+..+.. .+.++....+.+...++.++.++.+...++................|.|+.++|- .
T Consensus 470 ~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 470 NSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred ccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCC
Confidence 345665533 22333332 2445555555566677777777777777776655333332335678999999984 2
Q ss_pred --CEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEE--ECCCCeE
Q 009597 426 --NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW--DWKSCKV 494 (531)
Q Consensus 426 --~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iw--d~~~~~~ 494 (531)
.++++|..+..+.+.-......+.....+.+......+.-.+|-.|..+|.++..||.+.-+ |..++..
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 37888888877665543332233333334444444556556777778999999999987655 5555554
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.46 E-value=0.049 Score=37.53 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.9
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcE
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 318 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 318 (531)
...|.+++|+|...+||.++.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5543
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.37 E-value=1.5 Score=42.37 Aligned_cols=145 Identities=16% Similarity=0.099 Sum_probs=85.7
Q ss_pred CeeEEEEecCCCEEEEEe--C-CCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEE-cCCcce
Q 009597 372 AVNTITFVDSNRRFVTSS--D-DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS-TRERFQ 447 (531)
Q Consensus 372 ~I~~l~~sp~~~~l~s~s--~-Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd-~~~~~~ 447 (531)
.+.+.+++++++.++... . ...+.++..... ..... ....+..-.|++++...++...+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688899999999877666 2 334555544433 22222 234788889999988777777666666663 222221
Q ss_pred eceeeeecCCccccceEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC------eEEEEeeccCCcEEEEEEecCCC
Q 009597 448 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWDWK---SC------KVFRTLKCHEGVCIGCEWHPLEQ 515 (531)
Q Consensus 448 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs---~dg~I~iwd~~---~~------~~~~~~~~h~~~V~~v~~~p~~~ 515 (531)
.... .........|..+.+||||..++... .++.|+|=-+. .+ ..+.........+..+.|.+ +.
T Consensus 101 ~~~~--v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~ 177 (253)
T PF10647_consen 101 EPVE--VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DS 177 (253)
T ss_pred eeEE--ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CC
Confidence 1111 11111111688999999999987765 35677765432 22 11122223345789999999 56
Q ss_pred CEEEEEeC
Q 009597 516 SKVATCGW 523 (531)
Q Consensus 516 ~~l~t~s~ 523 (531)
.+++.+..
T Consensus 178 ~L~V~~~~ 185 (253)
T PF10647_consen 178 TLVVLGRS 185 (253)
T ss_pred EEEEEeCC
Confidence 65555544
No 402
>PHA03098 kelch-like protein; Provisional
Probab=95.33 E-value=0.74 Score=49.80 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=72.1
Q ss_pred cEEEEeeCCC------eEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCC-----CCEEEEEcCCCeEEEEee
Q 009597 341 NILLAGMSDK------KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYIS 409 (531)
Q Consensus 341 ~~l~sg~~dg------~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~D-----g~I~iwd~~~~~~~~~~~ 409 (531)
.+++.|+.++ .+..||..+.+....-.............-+++.++.||.+ ..+..||..+......-.
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 375 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPP 375 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC
Confidence 5677776543 57788887765432111111111111122367777888765 347778887664432211
Q ss_pred CCCCCCccEEEEeCCCCEEEEEEcC------CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCC--
Q 009597 410 EPHMHSMPSISLHPNTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-- 481 (531)
Q Consensus 410 ~~~~~~v~~v~~sp~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-- 481 (531)
.+....-.+++. -++++++.|+.+ +.+..||..+.. ......+.... .... + ...++.+++.|+.+
T Consensus 376 lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r--~~~~-~-~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 376 LIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISH--YGGC-A-IYHDGKIYVIGGISYI 449 (534)
T ss_pred cCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccc--cCce-E-EEECCEEEEECCccCC
Confidence 111111222222 356777777632 457888877532 11111111111 0111 2 22356666667643
Q ss_pred ------CcEEEEECCCCeE
Q 009597 482 ------GKCWFWDWKSCKV 494 (531)
Q Consensus 482 ------g~I~iwd~~~~~~ 494 (531)
..+.+||..+.+-
T Consensus 450 ~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCCcccceEEEecCCCCce
Confidence 2388889876543
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.29 E-value=4.3 Score=42.09 Aligned_cols=145 Identities=12% Similarity=0.130 Sum_probs=89.4
Q ss_pred CCEEEEEecCCeEEEEeCCCCc-----EEEEccCCCcceEEEEccC-CCCCcEEEEeeCCCeEEEEECCC--Cc------
Q 009597 296 GTKFLTASYDKNIKYWDTETGQ-----VIRTFSTGKIPYVVKLNPD-DDKQNILLAGMSDKKIVQWDMNT--KE------ 361 (531)
Q Consensus 296 g~~l~s~s~Dg~I~vWd~~t~~-----~i~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~dg~I~iwd~~t--~~------ 361 (531)
...|++||..|.++|++..... ++.......++..+..-.+ .......++.-.-..+.+|.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 4579999999999999985433 3444444444444444332 22233455556677888888722 11
Q ss_pred -eeEEEcccCC--CeeEEEEec----C-CCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEc
Q 009597 362 -ITQEYDQHLG--AVNTITFVD----S-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 433 (531)
Q Consensus 362 -~~~~~~~h~~--~I~~l~~sp----~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~ 433 (531)
.+..+..|.- ....+++-| . ..++.+=+.||.+.+|+-+.-.....+. ..--...+++.+....|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCCEEEEecC
Confidence 1222222322 222333333 2 3467788999999999987655444432 2333446788888899999999
Q ss_pred CCeEEEEEc
Q 009597 434 DNQILIYST 442 (531)
Q Consensus 434 Dg~I~iwd~ 442 (531)
+..|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 999999975
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.20 E-value=1.1 Score=47.22 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=89.1
Q ss_pred cCceEEEEEccCCCEE-EEEe--cCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCC-cEEEEeeCCCeEEEEECC-
Q 009597 284 SKAVRDISFCNDGTKF-LTAS--YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ-NILLAGMSDKKIVQWDMN- 358 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l-~s~s--~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~I~iwd~~- 358 (531)
-.+|..++|. ||+.+ +|.- ..|.+++=|. ..+..| +.+..+.|.+....+ ..+++......|.+|.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4589999997 55544 4432 2344433322 334444 334455665543222 256777778899999884
Q ss_pred ----CCceeEEEcccC---CC--eeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEE
Q 009597 359 ----TKEITQEYDQHL---GA--VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 429 (531)
Q Consensus 359 ----t~~~~~~~~~h~---~~--I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 429 (531)
+++.+.....+- -+ -..+.|+|....|++-.....-.+++++.............+.|.|.+|.++|+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 223222221111 11 246789999888777666554455666543222222223677899999999999887
Q ss_pred EEEcC-CeEEEEEcCC
Q 009597 430 AQSLD-NQILIYSTRE 444 (531)
Q Consensus 430 s~s~D-g~I~iwd~~~ 444 (531)
++-.. =.-+|||-..
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 75433 3567888554
No 405
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.16 E-value=3.1 Score=41.69 Aligned_cols=104 Identities=8% Similarity=0.115 Sum_probs=53.1
Q ss_pred cEEEEeeCC-----CeEEEEECCCCce---eEEEcccCCCe--eEEEEecCCCEEEEEeC-----CCCEEEEEcCCCeEE
Q 009597 341 NILLAGMSD-----KKIVQWDMNTKEI---TQEYDQHLGAV--NTITFVDSNRRFVTSSD-----DKSLRVWEFGIPVVI 405 (531)
Q Consensus 341 ~~l~sg~~d-----g~I~iwd~~t~~~---~~~~~~h~~~I--~~l~~sp~~~~l~s~s~-----Dg~I~iwd~~~~~~~ 405 (531)
.+++.|+.+ ..+..||+.+.+- ...+..-..+. .+++. -+++.++.|+. ...+..||+.+.+-.
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 567777654 3577778766543 12221111111 12222 25667777764 235788888776543
Q ss_pred EEeeCCCCCCccEEEEeCCCCEEEEEEcCC----eEEEEEcCCc
Q 009597 406 KYISEPHMHSMPSISLHPNTNWLAAQSLDN----QILIYSTRER 445 (531)
Q Consensus 406 ~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg----~I~iwd~~~~ 445 (531)
..-..+........+..-++++.+.|+.++ .+.+||..+.
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 221111112222233334677778877664 3567887763
No 406
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.08 E-value=2.2 Score=46.39 Aligned_cols=196 Identities=12% Similarity=0.087 Sum_probs=99.5
Q ss_pred eEEEEEccCCCEEEEEecC------CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCC-----eEEEE
Q 009597 287 VRDISFCNDGTKFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQW 355 (531)
Q Consensus 287 V~~l~fspdg~~l~s~s~D------g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~I~iw 355 (531)
-.+++.. ++...++||.| .++..||..+.+-...-.............. .+.+.++|+.|| +|-.|
T Consensus 325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEe
Confidence 3344443 45678889988 3577788877765442222111111122221 346888898886 47778
Q ss_pred ECCCCceeEEEcccCCCeeEEE-EecCCCEEEEEeCCC------CEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEE
Q 009597 356 DMNTKEITQEYDQHLGAVNTIT-FVDSNRRFVTSSDDK------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 428 (531)
Q Consensus 356 d~~t~~~~~~~~~h~~~I~~l~-~sp~~~~l~s~s~Dg------~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 428 (531)
|..+.+-...-.-.. ...+.. ..-+|...++|+.++ ++..||..+......-.-.....-..++.- ++.+.
T Consensus 402 Dp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iY 479 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIY 479 (571)
T ss_pred cCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEEE
Confidence 876654221111111 122222 222677888888654 467788777654332211111112223322 67888
Q ss_pred EEEEcCC-----eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCC
Q 009597 429 AAQSLDN-----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-----CWFWDWKSC 492 (531)
Q Consensus 429 ~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~-----I~iwd~~~~ 492 (531)
++|+.|+ +|..||..+..-. .+......... +. + ..-++...++|+.||. |..||..+.
T Consensus 480 vvGG~~~~~~~~~VE~ydp~~~~W~-~v~~m~~~rs~--~g-~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 480 VVGGFDGTSALSSVERYDPETNQWT-MVAPMTSPRSA--VG-V-VVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EECCccCCCccceEEEEcCCCCcee-EcccCcccccc--cc-E-EEECCEEEEEecccCccccceeEEcCCCCC
Confidence 8888776 3677887653211 11111111111 11 1 1225667778887763 666665543
No 407
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=1.8 Score=39.75 Aligned_cols=197 Identities=13% Similarity=0.032 Sum_probs=100.5
Q ss_pred EEEEccCCCcceEEEEccCCCCCcEEEEeeCC--CeEEEEECCCCceeEEEcccCCCeeEEEEecCCC-EEEEEeCCCCE
Q 009597 318 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSL 394 (531)
Q Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~Dg~I 394 (531)
.++++.+........+...+ ++++.+.+.- ..|++||+.+++.+.+-.-....+..=-...-+. .....-.+|.-
T Consensus 36 vi~~yphDs~sfTQGL~~~~--g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egva 113 (262)
T COG3823 36 VIRTYPHDSTSFTQGLEYLD--GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVA 113 (262)
T ss_pred EEEeccCchhhhhcceeeeC--CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecccee
Confidence 44444444333333333322 2566666543 4799999999987765543322222111111122 23344567888
Q ss_pred EEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeee-ecCCccccceEEEEEcCCCC
Q 009597 395 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFSPDGR 473 (531)
Q Consensus 395 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~ 473 (531)
.++|.++.+.+..+.- .+.-..++ .+++.|+.+....+++.-|-.+-..+..+.. +.+.. -..++.+.|- +|.
T Consensus 114 f~~d~~t~~~lg~~~y--~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p-v~~LNELE~V-dG~ 187 (262)
T COG3823 114 FKYDADTLEELGRFSY--EGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP-VSKLNELEWV-DGE 187 (262)
T ss_pred EEEChHHhhhhccccc--CCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee-cccccceeee-ccE
Confidence 8888888776655532 22223333 3555566655555555555444322222221 11111 1112223332 454
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEee------------ccCCcEEEEEEecCCCCEEEEEe
Q 009597 474 FVMSGDGEGKCWFWDWKSCKVFRTLK------------CHEGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 474 ~l~sgs~dg~I~iwd~~~~~~~~~~~------------~h~~~V~~v~~~p~~~~~l~t~s 522 (531)
..+-.=.+..|...|..+|+.+..+. .|....+.+++.|+..++++||-
T Consensus 188 lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 188 LYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 44444444455555666666655442 24557789999997777888763
No 408
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.99 E-value=0.082 Score=36.40 Aligned_cols=33 Identities=9% Similarity=0.296 Sum_probs=28.8
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 009597 460 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 493 (531)
Q Consensus 460 ~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 493 (531)
...|.+++|+|...+||.|+.+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 445888999999999999999999999998 444
No 409
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.83 E-value=1.5 Score=48.14 Aligned_cols=102 Identities=16% Similarity=0.269 Sum_probs=71.3
Q ss_pred CcEEEEeeCCCeEEEEECCC-------C----c---------eeEEEcccCCCeeEEEEe--cCCCEEEEEeCCCCEEEE
Q 009597 340 QNILLAGMSDKKIVQWDMNT-------K----E---------ITQEYDQHLGAVNTITFV--DSNRRFVTSSDDKSLRVW 397 (531)
Q Consensus 340 ~~~l~sg~~dg~I~iwd~~t-------~----~---------~~~~~~~h~~~I~~l~~s--p~~~~l~s~s~Dg~I~iw 397 (531)
..+|+++..||.|.+|.+++ . + +...+. -...+++++++ ...++||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 46899999999999997621 0 0 111222 23578999999 778888888888888887
Q ss_pred EcCCC--eEEEEeeCCCCCCccEEEEeCCC---C---EEEEEEcCCeEEEEEc
Q 009597 398 EFGIP--VVIKYISEPHMHSMPSISLHPNT---N---WLAAQSLDNQILIYST 442 (531)
Q Consensus 398 d~~~~--~~~~~~~~~~~~~v~~v~~sp~~---~---~l~s~s~Dg~I~iwd~ 442 (531)
-+... +....-...+.+.|++|+|-++. . +|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65442 11111122477889999998743 2 7888999999999888
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=0.24 Score=55.63 Aligned_cols=132 Identities=10% Similarity=-0.010 Sum_probs=81.8
Q ss_pred EEeeCCCeEEEEECCCCceeE-----EEc------ccCCCeeEEEEecCCC-EEEEEeCCCCEEEEEcCCCeEEEEeeCC
Q 009597 344 LAGMSDKKIVQWDMNTKEITQ-----EYD------QHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEP 411 (531)
Q Consensus 344 ~sg~~dg~I~iwd~~t~~~~~-----~~~------~h~~~I~~l~~sp~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 411 (531)
+....+-.|..||+++...-. -+. .......++.|+|.-. .++.+..|+.|++.-+........- .+
T Consensus 118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p 196 (1405)
T KOG3630|consen 118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FP 196 (1405)
T ss_pred EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cC
Confidence 333444578899987543211 111 1223456788887543 3667778999998876543222111 24
Q ss_pred CCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEE
Q 009597 412 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 478 (531)
Q Consensus 412 ~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 478 (531)
.....++++|+|.|+.+++|-..|++.-|...-.... .+...... ....|.+|+|-....+|++-
T Consensus 197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~-~ip~Pp~~-e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS-EIPEPPVE-ENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred cccceeeEEeccccceeeEecCCCeEEEeecccceee-cccCCCcC-CCcceeEEEEecceeEEEEe
Confidence 5677899999999999999999999999975432111 11111111 13668889998877777653
No 411
>PHA02790 Kelch-like protein; Provisional
Probab=94.47 E-value=3.8 Score=43.70 Aligned_cols=145 Identities=8% Similarity=-0.046 Sum_probs=70.7
Q ss_pred CCCEEEEEecCC-----eEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCC--CeEEEEECCCCceeEEEc
Q 009597 295 DGTKFLTASYDK-----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYD 367 (531)
Q Consensus 295 dg~~l~s~s~Dg-----~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~I~iwd~~t~~~~~~~~ 367 (531)
++..++.||.++ .+..||..+++....-.............. ++.+.++|+.+ ..+..||..+++-...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777543 466788877654432222111111111111 23677777754 357788876553322111
Q ss_pred ccCCCeeEEEEecCCCEEEEEeCCC---CEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 009597 368 QHLGAVNTITFVDSNRRFVTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444 (531)
Q Consensus 368 ~h~~~I~~l~~sp~~~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~ 444 (531)
-...........-+++..+.|+.++ .+..||.++......-..+....-.+++ .-++++.+.| |.+.+||..+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecCCC
Confidence 1111111122223677788887654 4778888776543321111111111222 2356666666 3567888765
Q ss_pred c
Q 009597 445 R 445 (531)
Q Consensus 445 ~ 445 (531)
.
T Consensus 425 ~ 425 (480)
T PHA02790 425 N 425 (480)
T ss_pred C
Confidence 3
No 412
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.41 E-value=7.3 Score=40.45 Aligned_cols=266 Identities=8% Similarity=0.076 Sum_probs=135.8
Q ss_pred CCCCCCCceeeeeecccCe-----eeEEecCccCceEEEEEcc----CCCEEEEEecCCeEEEEeCCC--Cc--------
Q 009597 257 NAGGEKGEHVEDKSTFHGK-----CMRTYMGHSKAVRDISFCN----DGTKFLTASYDKNIKYWDTET--GQ-------- 317 (531)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~-----~~~~l~gH~~~V~~l~fsp----dg~~l~s~s~Dg~I~vWd~~t--~~-------- 317 (531)
...|+..|.++++.+.... ++... .-..+|..|..-+ .....++.-.-+.+.||.+.. |.
T Consensus 40 IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~ 118 (418)
T PF14727_consen 40 IIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQ 118 (418)
T ss_pred EEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEE
Confidence 4456778888888774322 11111 2346888887543 222233334567788887621 11
Q ss_pred --EEEEccCCCcceEEEEccCCCC--CcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCC
Q 009597 318 --VIRTFSTGKIPYVVKLNPDDDK--QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 393 (531)
Q Consensus 318 --~i~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~ 393 (531)
.+......+..+.+++-+.+.- ..++++-+.||.+.+|+-+.-...+.+.. .--...+.|.+....|++++.+..
T Consensus 119 L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~ 197 (418)
T PF14727_consen 119 LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWT 197 (418)
T ss_pred EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCcee
Confidence 1222223334444444444332 47899999999999999765544444433 222345788888889999999888
Q ss_pred EEEEEcCCCeEE-----------------EEe----eCCCCCCcc---EEEEeCCCCEEEEEEcCCeEEEEEcCCcceec
Q 009597 394 LRVWEFGIPVVI-----------------KYI----SEPHMHSMP---SISLHPNTNWLAAQSLDNQILIYSTRERFQLN 449 (531)
Q Consensus 394 I~iwd~~~~~~~-----------------~~~----~~~~~~~v~---~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 449 (531)
|..|....-... +.+ .-.-...+. .+.++.....+++-+ ...+.+.+... .+.
T Consensus 198 l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G--~l~ 274 (418)
T PF14727_consen 198 LECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNG--SLR 274 (418)
T ss_pred EEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCC--eEE
Confidence 888875221000 000 000111122 222222222233222 23444444322 333
Q ss_pred eeeeecCCccccceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeEEEEeeccCCcE-EEEEEecCCCCEEEEEeCCC
Q 009597 450 KKKRFAGHIVAGYACQVNFSPDG---RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC-IGCEWHPLEQSKVATCGWDG 525 (531)
Q Consensus 450 ~~~~~~~~~~~~~v~~l~~spdg---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V-~~v~~~p~~~~~l~t~s~Dg 525 (531)
-.+.+......-.+..+.+..++ ..+++++.++.+.||. ..+++...+....+| ..++..+.-...|++-+.+|
T Consensus 275 ~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G 352 (418)
T PF14727_consen 275 FQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEG 352 (418)
T ss_pred EEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCC
Confidence 33444333222111112111222 2588899999999986 334444443333332 22222222456888888899
Q ss_pred CEEe
Q 009597 526 LIKY 529 (531)
Q Consensus 526 ~I~i 529 (531)
.|.+
T Consensus 353 ~L~v 356 (418)
T PF14727_consen 353 QLSV 356 (418)
T ss_pred cEEE
Confidence 8865
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.35 E-value=1.3 Score=48.05 Aligned_cols=100 Identities=12% Similarity=0.221 Sum_probs=69.1
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEc-ccCCCeeEEEEe--cCCCEEEEEeCCCCEEEEEcC-------CC--eEEEEe
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFV--DSNRRFVTSSDDKSLRVWEFG-------IP--VVIKYI 408 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~~-~h~~~I~~l~~s--p~~~~l~s~s~Dg~I~iwd~~-------~~--~~~~~~ 408 (531)
...++-+....+.|||.+.+....+-. ...+.|.++.|. |+++.+++.+....|.+|--. .+ ..++.+
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 344445556689999998887443322 346889999987 588999999999999998542 11 233333
Q ss_pred --eCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEc
Q 009597 409 --SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 442 (531)
Q Consensus 409 --~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~ 442 (531)
.....++|.+..|.++|.+++.. ++++.|+|-
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 22234789999999999765543 578888874
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.34 E-value=11 Score=42.38 Aligned_cols=191 Identities=12% Similarity=0.074 Sum_probs=106.9
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEcccCCC--------eeEEEEec----------------CCCEEEEEeCCCCEEE
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGA--------VNTITFVD----------------SNRRFVTSSDDKSLRV 396 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~--------I~~l~~sp----------------~~~~l~s~s~Dg~I~i 396 (531)
..++.++.++.|.-.|..+|+.+-.+...... ...+.+.. .+.+++.++.|+.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 35666777788888888888877776543211 12233321 3457888889999999
Q ss_pred EEcCCCeEEEEeeCCC-------CCCc----cEEEEeC--CCCEEEEEEc----------CCeEEEEEcCCcceeceeee
Q 009597 397 WEFGIPVVIKYISEPH-------MHSM----PSISLHP--NTNWLAAQSL----------DNQILIYSTRERFQLNKKKR 453 (531)
Q Consensus 397 wd~~~~~~~~~~~~~~-------~~~v----~~v~~sp--~~~~l~s~s~----------Dg~I~iwd~~~~~~~~~~~~ 453 (531)
.|.++++.+..+.... .... ..+.-.| .+..+++|+. +|.|+-||+.+++.+-....
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 9999998776543210 0000 0111122 2445666643 68899999999877654432
Q ss_pred ec---------CC----ccccceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCeEEEEeec-c
Q 009597 454 FA---------GH----IVAGYACQVNFSPDGRFVMSGDG------------------EGKCWFWDWKSCKVFRTLKC-H 501 (531)
Q Consensus 454 ~~---------~~----~~~~~v~~l~~spdg~~l~sgs~------------------dg~I~iwd~~~~~~~~~~~~-h 501 (531)
-. +. .....-..+++++...+++.+.. .+.|.-.|.++|+..-.++. |
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~ 434 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH 434 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence 10 00 00000022456665555544321 24566778889988877764 3
Q ss_pred CC--------cEEEEEEecCCC---CEEEEEeCCCCEEeeC
Q 009597 502 EG--------VCIGCEWHPLEQ---SKVATCGWDGLIKYWD 531 (531)
Q Consensus 502 ~~--------~V~~v~~~p~~~---~~l~t~s~Dg~I~iWD 531 (531)
.+ ...-+.+...++ ..|+.++.+|.+.+.|
T Consensus 435 hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlD 475 (764)
T TIGR03074 435 HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLD 475 (764)
T ss_pred CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEE
Confidence 21 011111211123 2788888899888776
No 415
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.19 E-value=0.61 Score=48.15 Aligned_cols=95 Identities=8% Similarity=0.062 Sum_probs=69.1
Q ss_pred cCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCC--------------
Q 009597 273 HGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD-------------- 338 (531)
Q Consensus 273 ~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~-------------- 338 (531)
+..+...|......+.+|+.+|++++.++...=|.|.|+|+.++..++.++.-....+.-+.....
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 455677888888899999999999988887777999999999999888776554443322211111
Q ss_pred ---CCcEEEEeeCCCeEEEEECCCCceeEEEc
Q 009597 339 ---KQNILLAGMSDKKIVQWDMNTKEITQEYD 367 (531)
Q Consensus 339 ---~~~~l~sg~~dg~I~iwd~~t~~~~~~~~ 367 (531)
...+++-.-.-|.|-||.++++..+..+.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 11245556778999999999887776654
No 416
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.18 E-value=7.4 Score=39.62 Aligned_cols=244 Identities=15% Similarity=0.124 Sum_probs=113.8
Q ss_pred ecccCeeeEEecCccCceEEE-----EEccCCCEEEEEec-C--CeEEEEeCCCCcEEEEccCCCc-ceEEEEccCCCCC
Q 009597 270 STFHGKCMRTYMGHSKAVRDI-----SFCNDGTKFLTASY-D--KNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQ 340 (531)
Q Consensus 270 ~~~~~~~~~~l~gH~~~V~~l-----~fspdg~~l~s~s~-D--g~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~ 340 (531)
+..+|..+..|..+...-..+ +|.+||+.|+-++. | ..+.+.|+.+++..+.-..... .....+++..
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~--- 92 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD--- 92 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS---
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC---
Confidence 455666666666544333333 46678877665554 4 4677778888877665433211 2223334432
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEe--cCCCEEEEEeC----------------------CCCEEE
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV--DSNRRFVTSSD----------------------DKSLRV 396 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~s--p~~~~l~s~s~----------------------Dg~I~i 396 (531)
+.++-......|+-.|+.+.+....+......+-...|. .++..++-.-. ...|.-
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 344444455788999999998877777777766656665 34555433211 223455
Q ss_pred EEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCC-----eEEEEEcCCc-ceeceeeeecCCccccceEEEEEcC
Q 009597 397 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSP 470 (531)
Q Consensus 397 wd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg-----~I~iwd~~~~-~~~~~~~~~~~~~~~~~v~~l~~sp 470 (531)
.|+.+++....+. ....+..+.|+|....+++-+..| .-+||-++.. .... ....+.....+..=-|.|
T Consensus 173 idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~---~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 173 IDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK---KVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E---ESS---TTEEEEEEEE-T
T ss_pred EECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce---eeecCCCCcccccccccC
Confidence 5677766544443 355677899999655555554443 1356655432 1121 122222234455566899
Q ss_pred CCCEEEEEe-----CCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCC
Q 009597 471 DGRFVMSGD-----GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 524 (531)
Q Consensus 471 dg~~l~sgs-----~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~D 524 (531)
||..|.--+ .+..|.-+|..+++....... ..+..+..++ ++.+++.=|.|
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~-Dg~L~vGDG~d 303 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSP-DGKLFVGDGGD 303 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-T-TSSEEEEEE--
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcC-CCCEEEecCCC
Confidence 998876432 244577788888765432221 2455555666 66666544444
No 417
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=2.7 Score=45.68 Aligned_cols=212 Identities=11% Similarity=0.173 Sum_probs=104.7
Q ss_pred CceEEEEEccCCC-EEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCcee
Q 009597 285 KAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 363 (531)
Q Consensus 285 ~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~ 363 (531)
+...+|..+|..- -+. +.--.|+|+++ +|+.+..+...+. ..+.+.|+.. ..|++...+|++++|++.. +.+
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~g-e~i 116 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDD--EELICVQKDGTVHVYGLLG-EFI 116 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCC-CeeeecccCC--ceEEEEeccceEEEeecch-hhh
Confidence 3445555555321 122 23346888886 6677666655444 5566666554 5689999999999999853 222
Q ss_pred EEE----cccCCCeeEEEEecCCCEEEEEeCCCCEE-EEEcCCCeEEEEeeCCCCCCc--cEEEEeCCC---CEEEEEE-
Q 009597 364 QEY----DQHLGAVNTITFVDSNRRFVTSSDDKSLR-VWEFGIPVVIKYISEPHMHSM--PSISLHPNT---NWLAAQS- 432 (531)
Q Consensus 364 ~~~----~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~-iwd~~~~~~~~~~~~~~~~~v--~~v~~sp~~---~~l~s~s- 432 (531)
..+ ......|..+.+..+|-.+++. +|.+. +-+...+.. .....-..... .|-+..+++ ..++-..
T Consensus 117 e~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~ 193 (829)
T KOG2280|consen 117 ESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV 193 (829)
T ss_pred cccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeech
Confidence 221 2222345555555455333333 34333 333333222 22221111112 222222221 1111111
Q ss_pred cCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee--ccCCcEEEEEE
Q 009597 433 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK--CHEGVCIGCEW 510 (531)
Q Consensus 433 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~v~~ 510 (531)
..+ ..++-..... . ....+.. ....+..+..||+.++|+--...|.|++-+....+.+..+. .|.- -..++|
T Consensus 194 ~v~-~~~~q~~~~~-~-q~~~~~~--~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~W 267 (829)
T KOG2280|consen 194 AVG-LHICQVEESR-V-QLHALSW--PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAW 267 (829)
T ss_pred hhh-hcccceeccc-c-cccccCC--CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhcee
Confidence 000 0111111110 0 0011111 12446679999999999999999999999888777766665 2222 235555
Q ss_pred ec
Q 009597 511 HP 512 (531)
Q Consensus 511 ~p 512 (531)
.-
T Consensus 268 cg 269 (829)
T KOG2280|consen 268 CG 269 (829)
T ss_pred ec
Confidence 54
No 418
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.12 E-value=0.091 Score=57.37 Aligned_cols=159 Identities=17% Similarity=0.188 Sum_probs=91.0
Q ss_pred cccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCC------CeEEEEeeCCCCCCccEEEEeC---CCCEEEEEEcCCe
Q 009597 367 DQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHP---NTNWLAAQSLDNQ 436 (531)
Q Consensus 367 ~~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~------~~~~~~~~~~~~~~v~~v~~sp---~~~~l~s~s~Dg~ 436 (531)
++..+.|-.+.|-. +...+. -.-|.+.|||+.. ......+..+....+.-+.|.| +.-+++++-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 44556666676643 111111 2235688888753 2233334444555556666665 6677888888888
Q ss_pred EEEEEcCCcceeceeeeecCCcc---------ccceEEEEEcCCCCEEEEEeCCCcEEEEEC-----CCCeEEEEeeccC
Q 009597 437 ILIYSTRERFQLNKKKRFAGHIV---------AGYACQVNFSPDGRFVMSGDGEGKCWFWDW-----KSCKVFRTLKCHE 502 (531)
Q Consensus 437 I~iwd~~~~~~~~~~~~~~~~~~---------~~~v~~l~~spdg~~l~sgs~dg~I~iwd~-----~~~~~~~~~~~h~ 502 (531)
|++.......+ ..+.+|.. .+++.--.+||||..++..+.||.+++|.+ ...++++.++.|.
T Consensus 207 i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 207 IRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 88876544221 22333421 122222347999999999999999888865 3446677777787
Q ss_pred C-cEEEEEEecCCC--------CEEEEEeC-CCCEEeeC
Q 009597 503 G-VCIGCEWHPLEQ--------SKVATCGW-DGLIKYWD 531 (531)
Q Consensus 503 ~-~V~~v~~~p~~~--------~~l~t~s~-Dg~I~iWD 531 (531)
+ +-.|..|+.+.. .++++++. ..-+++|.
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 4 333333443211 14555554 44588884
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.00 E-value=2.7 Score=43.05 Aligned_cols=146 Identities=11% Similarity=0.070 Sum_probs=77.6
Q ss_pred CCeeEEEEecCCCEEEEEe-----------CCC-CEEEEEcCC--Ce--EEEEeeCCCCCCccEEEEeCCCCEEEEEEcC
Q 009597 371 GAVNTITFVDSNRRFVTSS-----------DDK-SLRVWEFGI--PV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLD 434 (531)
Q Consensus 371 ~~I~~l~~sp~~~~l~s~s-----------~Dg-~I~iwd~~~--~~--~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~D 434 (531)
.....|+|.++|+++++.. ..+ .|.+++-.. ++ ....+.. .......+++.+++ +++ ++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC-EEE-eCCC
Confidence 4456788888888777653 223 676665432 22 2233333 34456889999888 444 3444
Q ss_pred CeEEEE-EcCCc-----ceeceeeeecCCc--cccceEEEEEcCCCCEEEEEeCC-------------------CcEEEE
Q 009597 435 NQILIY-STRER-----FQLNKKKRFAGHI--VAGYACQVNFSPDGRFVMSGDGE-------------------GKCWFW 487 (531)
Q Consensus 435 g~I~iw-d~~~~-----~~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~sgs~d-------------------g~I~iw 487 (531)
.|..| |.... ........+.... .......+.|.|||.+.++-+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 44444 44321 1111112222210 12336669999999877654421 445556
Q ss_pred ECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEe
Q 009597 488 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 522 (531)
Q Consensus 488 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s 522 (531)
+...++....-.++. ....++|+| .+.++++-.
T Consensus 170 ~pdg~~~e~~a~G~r-np~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQ-NPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEecCcC-CCccceECC-CCCEEEEcc
Confidence 655544322222333 346899999 666666543
No 420
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.97 E-value=1.6 Score=46.13 Aligned_cols=150 Identities=14% Similarity=0.141 Sum_probs=85.8
Q ss_pred CCeeEEEEecCCCEEEEEe---CCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCC----CCEEEEEEcCCeEEEEEcC
Q 009597 371 GAVNTITFVDSNRRFVTSS---DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN----TNWLAAQSLDNQILIYSTR 443 (531)
Q Consensus 371 ~~I~~l~~sp~~~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~----~~~l~s~s~Dg~I~iwd~~ 443 (531)
.+|..++|. ||+.++-.. ..|.+++=| ...+.. -.-|..+.|.|- ...|++......|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGq-----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQ-----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeec-----cceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 478889997 454444332 233333211 222322 234788999883 3345555677889999875
Q ss_pred Cc-----ceece-eeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEeeccCCcEEEEEEecCCC
Q 009597 444 ER-----FQLNK-KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK--SCKVFRTLKCHEGVCIGCEWHPLEQ 515 (531)
Q Consensus 444 ~~-----~~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~--~~~~~~~~~~h~~~V~~v~~~p~~~ 515 (531)
-. +.+.. ...+ +.........+.|+|....|++-.....-.+++++ +.+....++ ..+.|.|.+|.+++.
T Consensus 91 ~s~~e~~K~l~sQtcEi-~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEI-REPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccceeeeeeec-cCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC
Confidence 21 11100 0001 00111112236799999988877665554556654 334444443 567899999999776
Q ss_pred CEEEEEeCCCCEEeeC
Q 009597 516 SKVATCGWDGLIKYWD 531 (531)
Q Consensus 516 ~~l~t~s~Dg~I~iWD 531 (531)
++++..|..=.-+|||
T Consensus 169 RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWD 184 (671)
T ss_pred EEEEEeCCeEEEEEec
Confidence 7777666666678887
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.86 E-value=1.7 Score=47.28 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=72.7
Q ss_pred CCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEe--CCCCEEEEEEcCCeEEEEEcCC----
Q 009597 371 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH--PNTNWLAAQSLDNQILIYSTRE---- 444 (531)
Q Consensus 371 ~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~s--p~~~~l~s~s~Dg~I~iwd~~~---- 444 (531)
....-+.-+.-++.-++-+....+.|||.+.+.......-.....|..+.|. |+++.+++.+..+.|.+|.-..
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 3444555555455444444455799999998875444333457789999886 5899999999999999986421
Q ss_pred -----cceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009597 445 -----RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 489 (531)
Q Consensus 445 -----~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 489 (531)
...+..+ .+..+. ...|....|.++|.+++..+ ..+.|+|-
T Consensus 110 ~~~p~w~~i~~i-~i~~~T-~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKI-DISSHT-PHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEE-EeecCC-CCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 0111111 122222 23467789999997765443 36888763
No 422
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.81 E-value=8.3 Score=38.87 Aligned_cols=237 Identities=14% Similarity=0.163 Sum_probs=114.0
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCCCcE---EEEcc---CC--CcceEEEEccCCCC-CcEEEEeeCC-------
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFS---TG--KIPYVVKLNPDDDK-QNILLAGMSD------- 349 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~---i~~~~---~~--~~~~~~~~~~~~~~-~~~l~sg~~d------- 349 (531)
.-++|+|.|||++|+ +...|.|++++ ..+.. +..+. .. ....-+.+++.-.. +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 457899999997665 45699999999 44443 33331 11 22344566664222 3333333321
Q ss_pred -CeEEEEECCCC-------c-eeEEEcc---cCCCeeEEEEecCCCEEEEEeCCCC---EEEEEcCCCeEEEEeeCC---
Q 009597 350 -KKIVQWDMNTK-------E-ITQEYDQ---HLGAVNTITFVDSNRRFVTSSDDKS---LRVWEFGIPVVIKYISEP--- 411 (531)
Q Consensus 350 -g~I~iwd~~t~-------~-~~~~~~~---h~~~I~~l~~sp~~~~l~s~s~Dg~---I~iwd~~~~~~~~~~~~~--- 411 (531)
..|.-|....+ + ++..+.. .......|.|.|+|.++++.+..+. ..-.+...++.++.-...
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24444444332 1 1122222 2234567999999988777765443 000000112222221111
Q ss_pred ------------------CCCCccEEEEeCC-CCEEEEE-EcCCeEEEEEcCCcce------e-----------------
Q 009597 412 ------------------HMHSMPSISLHPN-TNWLAAQ-SLDNQILIYSTRERFQ------L----------------- 448 (531)
Q Consensus 412 ------------------~~~~v~~v~~sp~-~~~l~s~-s~Dg~I~iwd~~~~~~------~----------------- 448 (531)
--.....++|+|. +.++++- +.++.=.|.-+..+.. .
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0122457899998 6655442 2222222222222110 0
Q ss_pred ---ceeeeecCCccccceEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCeEEE---E-eeccCCcEEEEEEecCC
Q 009597 449 ---NKKKRFAGHIVAGYACQVNFSP-------DGRFVMSGDGEGKCWFWDWKSCKVFR---T-LKCHEGVCIGCEWHPLE 514 (531)
Q Consensus 449 ---~~~~~~~~~~~~~~v~~l~~sp-------dg~~l~sgs~dg~I~iwd~~~~~~~~---~-~~~h~~~V~~v~~~p~~ 514 (531)
.....+..| ..+..+.|.. .|.++++.-..+.|....+.....+. . +......+..+++.| +
T Consensus 241 ~~~~P~~~~~~~---~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-D 316 (331)
T PF07995_consen 241 GFVPPVFAYPPH---SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-D 316 (331)
T ss_dssp TS---SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-T
T ss_pred CcCccceeecCc---cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-C
Confidence 001112222 2344555543 45567666667788888776443222 1 223444789999999 7
Q ss_pred CCEEEEEeCCCCEE
Q 009597 515 QSKVATCGWDGLIK 528 (531)
Q Consensus 515 ~~~l~t~s~Dg~I~ 528 (531)
+.++++.+.+|.|.
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 88888877888874
No 423
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.76 E-value=7.6 Score=38.28 Aligned_cols=171 Identities=12% Similarity=0.204 Sum_probs=92.1
Q ss_pred eEEEEeCCCCcEEEEccCCCc-----ceE--EEEccCCC---CCcEEEEeeCCCeEEEEECCCCceeEEEcccC------
Q 009597 307 NIKYWDTETGQVIRTFSTGKI-----PYV--VKLNPDDD---KQNILLAGMSDKKIVQWDMNTKEITQEYDQHL------ 370 (531)
Q Consensus 307 ~I~vWd~~t~~~i~~~~~~~~-----~~~--~~~~~~~~---~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~------ 370 (531)
.|.+||+.+++.++++..... ... +.+..... .....++=+..+-|.|+|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 789999999999988865432 222 22322211 12345555566799999999887665554321
Q ss_pred -------------CCeeEEEEec---CCCEEEEEeCCCCEEEEEcC-----CCe---------EEEEeeCCCCCCccEEE
Q 009597 371 -------------GAVNTITFVD---SNRRFVTSSDDKSLRVWEFG-----IPV---------VIKYISEPHMHSMPSIS 420 (531)
Q Consensus 371 -------------~~I~~l~~sp---~~~~l~s~s~Dg~I~iwd~~-----~~~---------~~~~~~~~~~~~v~~v~ 420 (531)
+.+..++.+| +++.|.-..-.+ -++|.+. ... .++.+.. .......++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccc-cCCCCceEE
Confidence 2255555554 444555444332 1223221 110 1112211 123566788
Q ss_pred EeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeec-CCccccceEEEEEcC--CCCEEEEEe
Q 009597 421 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA-GHIVAGYACQVNFSP--DGRFVMSGD 479 (531)
Q Consensus 421 ~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~v~~l~~sp--dg~~l~sgs 479 (531)
++++|.++++--..+.|..|+............+. ....-.++..+.+.+ +|.+.+...
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 99999999999999999999988744332222222 121135677788888 666655543
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=93.75 E-value=3.8 Score=43.71 Aligned_cols=171 Identities=9% Similarity=-0.017 Sum_probs=81.5
Q ss_pred cEEEEeeCCC-----eEEEEECCCCceeEEEcccCCCe-eEEEEecCCCEEEEEeCC--CCEEEEEcCCCeEEEEeeCCC
Q 009597 341 NILLAGMSDK-----KIVQWDMNTKEITQEYDQHLGAV-NTITFVDSNRRFVTSSDD--KSLRVWEFGIPVVIKYISEPH 412 (531)
Q Consensus 341 ~~l~sg~~dg-----~I~iwd~~t~~~~~~~~~h~~~I-~~l~~sp~~~~l~s~s~D--g~I~iwd~~~~~~~~~~~~~~ 412 (531)
.++++|+.++ .+..||..+++-...-.-..... .+++ .-++..++.|+.+ .++..||..+......-..+.
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 5667776543 57778887765332111111111 1222 2367777888754 357888876654332211111
Q ss_pred CCCccEEEEeCCCCEEEEEEcCC---eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009597 413 MHSMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 489 (531)
Q Consensus 413 ~~~v~~v~~sp~~~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 489 (531)
...-.+++ .-++++.+.|+.++ .+..||..+.. ........... .... + ..-+|.+.+.|+ .+.+||.
T Consensus 352 ~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r--~~~~-~-~~~~~~IYv~GG---~~e~ydp 422 (480)
T PHA02790 352 PRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPH--YKSC-A-LVFGRRLFLVGR---NAEFYCE 422 (480)
T ss_pred CCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCcc--ccce-E-EEECCEEEEECC---ceEEecC
Confidence 11111222 23677778877654 46778876532 11111111110 1111 1 233566666663 5678888
Q ss_pred CCCeEE--EEeeccCCcEEEEEEecCCCCEEEEEeCC
Q 009597 490 KSCKVF--RTLKCHEGVCIGCEWHPLEQSKVATCGWD 524 (531)
Q Consensus 490 ~~~~~~--~~~~~h~~~V~~v~~~p~~~~~l~t~s~D 524 (531)
.+.+-. ..+....... +++.. ++.+.+.||.+
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~v~--~~~IYviGG~~ 456 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELIIV--DNKLLLIGGFY 456 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEEEE--CCEEEEECCcC
Confidence 765432 2222112222 23332 55677777754
No 425
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.61 E-value=0.74 Score=47.57 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=90.7
Q ss_pred CCCEEE-EEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCC----cEEEEeeCCCeEEEEECCCCc-eeEEEcc
Q 009597 295 DGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ----NILLAGMSDKKIVQWDMNTKE-ITQEYDQ 368 (531)
Q Consensus 295 dg~~l~-s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~----~~l~sg~~dg~I~iwd~~t~~-~~~~~~~ 368 (531)
|.++|+ .|+.-..++-.|++.|+.+.....+..+ ++.+.|..... ..-++|-++..|.-.|.+-.. .+.. ..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-VE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-ee
Confidence 444433 4555567778899999999998877776 66666643221 124567777777777765432 1111 11
Q ss_pred cCCCeeEEEEe----cCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 009597 369 HLGAVNTITFV----DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 443 (531)
Q Consensus 369 h~~~I~~l~~s----p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~ 443 (531)
....++--.|+ ....+++.+|..|-|++||-- +...+.........|..+..+.+|+++++.+ ...|.+-|++
T Consensus 556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ehhccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 11222222222 245689999999999999943 3233333334566788899999999888765 4667777765
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.57 E-value=7.8 Score=43.26 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=53.0
Q ss_pred CCeeEEEEecCCCEEEEEeCCCCEEEEEcCC----------C-e--EEEEee-------CCCCCCccEEEEeCC---CCE
Q 009597 371 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGI----------P-V--VIKYIS-------EPHMHSMPSISLHPN---TNW 427 (531)
Q Consensus 371 ~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~----------~-~--~~~~~~-------~~~~~~v~~v~~sp~---~~~ 427 (531)
-.|..|.++|+|++++..|..| |.|-.+-. + . ..+.+. ......|..+.|||. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688899999999999998866 44444421 1 1 111111 123456889999995 688
Q ss_pred EEEEEcCCeEEEEEcCCcc
Q 009597 428 LAAQSLDNQILIYSTRERF 446 (531)
Q Consensus 428 l~s~s~Dg~I~iwd~~~~~ 446 (531)
|++-+.|++|++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9999999999999997643
No 427
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=6.3 Score=36.36 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=71.1
Q ss_pred eeeEEecCccCceE-EEEEccCCCEEEEEecC--CeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCe
Q 009597 275 KCMRTYMGHSKAVR-DISFCNDGTKFLTASYD--KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 351 (531)
Q Consensus 275 ~~~~~l~gH~~~V~-~l~fspdg~~l~s~s~D--g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 351 (531)
+.++++...+..-+ .+.+ .+|.++.+.+.- ..|++||+.+|+.+.+-.... +....=-...-...+....-.+|.
T Consensus 35 evi~~yphDs~sfTQGL~~-~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LTw~egv 112 (262)
T COG3823 35 EVIRTYPHDSTSFTQGLEY-LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLTWKEGV 112 (262)
T ss_pred EEEEeccCchhhhhcceee-eCCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEEeccce
Confidence 45566653333322 2333 256666666543 469999999999887665441 111110001112245556667888
Q ss_pred EEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 009597 352 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 352 I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~ 402 (531)
-..+|.++.+++..+. ..+.-+.++. ++..|+.++...+++.-|-++.
T Consensus 113 af~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 113 AFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred eEEEChHHhhhhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHh
Confidence 9999998888777664 2344455554 5555777666666776665543
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.42 E-value=6.6 Score=36.50 Aligned_cols=141 Identities=16% Similarity=0.241 Sum_probs=81.2
Q ss_pred EEEEeeCCCeEEEEECCC--CceeEEEcccCCCeeEEEEecCCCEEEEEeCC------CCEEEE-EcCC------Ce---
Q 009597 342 ILLAGMSDKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDSNRRFVTSSDD------KSLRVW-EFGI------PV--- 403 (531)
Q Consensus 342 ~l~sg~~dg~I~iwd~~t--~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~D------g~I~iw-d~~~------~~--- 403 (531)
.|+.+...+.|.+|++.. .+....|..- +.|..+.++..|.+++|--.+ ..+|+| +++. +.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 344447778899999983 3456666544 889999999999999985432 256665 2221 11
Q ss_pred ----------------EEEEeeCCCCCCccEEEEeC-CCCEEEEEEcCCeEEEEEcCCcce-ecee--eee----cCCcc
Q 009597 404 ----------------VIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQ-LNKK--KRF----AGHIV 459 (531)
Q Consensus 404 ----------------~~~~~~~~~~~~v~~v~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~-~~~~--~~~----~~~~~ 459 (531)
.+..+..|...++.+++..| .|++ ++| .++++.+|.+..... .... ..| -.|..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg-~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVG-CGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEE-cCCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 12223334455678888888 4554 443 467889998765432 1111 111 12222
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009597 460 AGYACQVNFSPDGRFVMSGDGEGKCWFWD 488 (531)
Q Consensus 460 ~~~v~~l~~spdg~~l~sgs~dg~I~iwd 488 (531)
......++|. +.|+|..+.. .++++.
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~~-ev~Vlk 212 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSDL-EVLVLK 212 (215)
T ss_pred CceEEEEEEE--eeEEEEecCC-EEEEEE
Confidence 2224445554 5577766544 555554
No 429
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.42 E-value=9.8 Score=38.48 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcC
Q 009597 392 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 434 (531)
Q Consensus 392 g~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~D 434 (531)
..+.+||..+.+-...-..+...........-++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 4578888877644332111111111122223367777777753
No 430
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=0.37 Score=54.19 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=86.1
Q ss_pred ceEEEEEccCCCEEE--EEecCCeEEEEeCCCCcEEE-----Ec-----cCCCcc--eEEEEccCCCCCcEEEEeeCCCe
Q 009597 286 AVRDISFCNDGTKFL--TASYDKNIKYWDTETGQVIR-----TF-----STGKIP--YVVKLNPDDDKQNILLAGMSDKK 351 (531)
Q Consensus 286 ~V~~l~fspdg~~l~--s~s~Dg~I~vWd~~t~~~i~-----~~-----~~~~~~--~~~~~~~~~~~~~~l~sg~~dg~ 351 (531)
+|..+..++|++..+ ..+.+-.|..||+++-..-. .+ .....+ .++.|.+... ...+++..|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--~n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--LNSAVDLSDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--chhhhhccccc
Confidence 455555566665443 33444578899986532211 11 111222 3344444333 45778888999
Q ss_pred EEEEECCCCce-eEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCC---CCCCccEEEEeCCCCE
Q 009597 352 IVQWDMNTKEI-TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNW 427 (531)
Q Consensus 352 I~iwd~~t~~~-~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~~~~ 427 (531)
|++..+..... +..+ .-....+|++|+|.|+.++.|-..|++.-|...-. ....+..+ ...+|.+|+|.....+
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeE
Confidence 99887753322 2222 23467899999999999999999999998875433 22222221 2467899999877666
Q ss_pred EEE
Q 009597 428 LAA 430 (531)
Q Consensus 428 l~s 430 (531)
+++
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 655
No 431
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.78 E-value=11 Score=37.34 Aligned_cols=228 Identities=14% Similarity=0.146 Sum_probs=101.0
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEEeCCC-CcEEEEc--cCCC--cceEEEEccCCCCCcEEEEeeCCCeEEEEEC
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTF--STGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 357 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~i~~~--~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~ 357 (531)
-...+.+|.|..+..-+++|. .+.| +.+.. |+.=... .... ......+.+... ..+++|. .+ +.+...
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~-~g-~ll~T~ 87 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGE-PG-LLLHTT 87 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEE-TT-EEEEES
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcC-Cc-eEEEec
Confidence 345899999996555566555 4543 33333 3211111 1111 122223333322 3455554 34 334444
Q ss_pred CCCceeEEEc---ccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcC
Q 009597 358 NTKEITQEYD---QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 434 (531)
Q Consensus 358 ~t~~~~~~~~---~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~D 434 (531)
..++.-..+. .-.+....+....++..++ ++..|.|.. ..+.+..-+.+.......+..+..+++|.++++++..
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 4444333322 1223344455544443333 444454332 2233433344444456778888889999988887665
Q ss_pred CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEEEE----eeccCCcEEEEE
Q 009597 435 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKSCKVFRT----LKCHEGVCIGCE 509 (531)
Q Consensus 435 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd-~~~~~~~~~----~~~h~~~V~~v~ 509 (531)
....-|+--... . ..+.. .....+..|.|+|++.+.+.+ ..|.|++=+ ......... +..-.-.+..++
T Consensus 166 ~~~~s~~~G~~~-w---~~~~r-~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a 239 (302)
T PF14870_consen 166 NFYSSWDPGQTT-W---QPHNR-NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLA 239 (302)
T ss_dssp SEEEEE-TT-SS-----EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEE
T ss_pred cEEEEecCCCcc-c---eEEcc-CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEE
Confidence 566677754311 1 11111 123558889999998877655 888888877 222222222 111222478999
Q ss_pred EecCCCCEEEEEeCCCCE
Q 009597 510 WHPLEQSKVATCGWDGLI 527 (531)
Q Consensus 510 ~~p~~~~~l~t~s~Dg~I 527 (531)
|.+ .....++|+ .|.|
T Consensus 240 ~~~-~~~~wa~gg-~G~l 255 (302)
T PF14870_consen 240 YRP-PNEIWAVGG-SGTL 255 (302)
T ss_dssp ESS-SS-EEEEES-TT-E
T ss_pred ecC-CCCEEEEeC-CccE
Confidence 998 566666554 4544
No 432
>PLN02193 nitrile-specifier protein
Probab=92.75 E-value=15 Score=38.94 Aligned_cols=150 Identities=9% Similarity=0.075 Sum_probs=73.5
Q ss_pred cEEEEeeCC-----CeEEEEECCCCceeEEEcc---cCCC-eeEEEEecCCCEEEEEeCCC-----CEEEEEcCCCeEEE
Q 009597 341 NILLAGMSD-----KKIVQWDMNTKEITQEYDQ---HLGA-VNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIK 406 (531)
Q Consensus 341 ~~l~sg~~d-----g~I~iwd~~t~~~~~~~~~---h~~~-I~~l~~sp~~~~l~s~s~Dg-----~I~iwd~~~~~~~~ 406 (531)
.+++.|+.+ ..+.+||+.+.+-...-.. .... -.+++ .-++++++.|+.++ .+..||+.+.....
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 567777655 3688899877643321111 1111 11222 23566777777543 46778887765432
Q ss_pred EeeC---CCCCCccEEEEeCCCCEEEEEEcC----CeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEe
Q 009597 407 YISE---PHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 479 (531)
Q Consensus 407 ~~~~---~~~~~v~~v~~sp~~~~l~s~s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 479 (531)
.-.. +....-..++.. ++++++.++.+ ..+.+||+.+..= ..+............. .+..-++++++.|+
T Consensus 309 ~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~-~~~~~~~~iyv~GG 385 (470)
T PLN02193 309 CSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVF-ASAAVGKHIVIFGG 385 (470)
T ss_pred CCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCccee-EEEEECCEEEEECC
Confidence 1110 011111222222 56777777755 4688999876421 1111110000011111 11223567777777
Q ss_pred CC--------------CcEEEEECCCCeE
Q 009597 480 GE--------------GKCWFWDWKSCKV 494 (531)
Q Consensus 480 ~d--------------g~I~iwd~~~~~~ 494 (531)
.. ..+.++|..+.+-
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEE
Confidence 43 2478889887654
No 433
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.75 E-value=13 Score=39.62 Aligned_cols=150 Identities=16% Similarity=0.085 Sum_probs=72.9
Q ss_pred CCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCC--CCCccEEEEeCCC
Q 009597 348 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNT 425 (531)
Q Consensus 348 ~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--~~~v~~v~~sp~~ 425 (531)
..+.+.++|.. |.++..+.........+...++|.+++..+ ..++.+|+-.. .+.....+. ...=..+...|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcccccccccEECCCC
Confidence 45667777754 555555544333333366778888776655 77888888644 333332212 1123567778899
Q ss_pred CEEEEEEc-------------CCeEEEEEcCCcceeceeee---e-------------------cCCccccceEEEEEcC
Q 009597 426 NWLAAQSL-------------DNQILIYSTRERFQLNKKKR---F-------------------AGHIVAGYACQVNFSP 470 (531)
Q Consensus 426 ~~l~s~s~-------------Dg~I~iwd~~~~~~~~~~~~---~-------------------~~~~~~~~v~~l~~sp 470 (531)
++|+.+.. ...|..+| .++..+..... + .....-..++++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 99988872 11233333 33322211110 0 0001112477899988
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCeEEEEeeccC
Q 009597 471 -DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 502 (531)
Q Consensus 471 -dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 502 (531)
++.+|+|+=.-..|...|.++++....+-.|.
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 55555555555689999999999888776553
No 434
>PLN02153 epithiospecifier protein
Probab=92.71 E-value=12 Score=37.70 Aligned_cols=147 Identities=12% Similarity=0.165 Sum_probs=70.2
Q ss_pred CCCEEEEEecC-------CeEEEEeCCCCcEEEEccCCCcce----EEEEccCCCCCcEEEEeeCC-----CeEEEEECC
Q 009597 295 DGTKFLTASYD-------KNIKYWDTETGQVIRTFSTGKIPY----VVKLNPDDDKQNILLAGMSD-----KKIVQWDMN 358 (531)
Q Consensus 295 dg~~l~s~s~D-------g~I~vWd~~t~~~i~~~~~~~~~~----~~~~~~~~~~~~~l~sg~~d-----g~I~iwd~~ 358 (531)
++.+++.|+.+ ..+.++|+.+.+-...-.....+. ....... .+.+++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34555666542 357788887765443221111110 1111111 23577777653 357888987
Q ss_pred CCceeE--EEcc---cCCCeeEEEEecCCCEEEEEeCC-----------CCEEEEEcCCCeEEEEeeCC----CCCCccE
Q 009597 359 TKEITQ--EYDQ---HLGAVNTITFVDSNRRFVTSSDD-----------KSLRVWEFGIPVVIKYISEP----HMHSMPS 418 (531)
Q Consensus 359 t~~~~~--~~~~---h~~~I~~l~~sp~~~~l~s~s~D-----------g~I~iwd~~~~~~~~~~~~~----~~~~v~~ 418 (531)
+.+-.. .+.. ........+..-+++.++.|+.+ ..|.+||..+..-.. +... ....-.+
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAG 188 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcce
Confidence 654322 1110 11111222223356677777754 247788887765432 2111 1111112
Q ss_pred EEEeCCCCEEEEEEcC-------------CeEEEEEcCCc
Q 009597 419 ISLHPNTNWLAAQSLD-------------NQILIYSTRER 445 (531)
Q Consensus 419 v~~sp~~~~l~s~s~D-------------g~I~iwd~~~~ 445 (531)
++. -++++++.++.+ +.|.+||..+.
T Consensus 189 ~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~ 227 (341)
T PLN02153 189 FAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG 227 (341)
T ss_pred EEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCC
Confidence 222 256666655432 45888887764
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.50 E-value=2.6 Score=43.74 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=88.3
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEecCCC-------EEEEEeCCCCEEEEEcCCCe-EEEEeeCCC
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-------RFVTSSDDKSLRVWEFGIPV-VIKYISEPH 412 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~-------~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~ 412 (531)
-++..|.....++-.|++.|+++.++..|... -+.|.|..+ .-++|-.+..|.-.|.+... .+.... .
T Consensus 481 li~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e--s 556 (776)
T COG5167 481 LIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE--S 556 (776)
T ss_pred eEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee--e
Confidence 45666777889999999999999999988665 577777542 23444455556666665432 111111 1
Q ss_pred CCCccEEEEe----CCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009597 413 MHSMPSISLH----PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 488 (531)
Q Consensus 413 ~~~v~~v~~s----p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd 488 (531)
....+.-.|+ ....++++++..|-|++||--... ....+++- +..|..+..+.+|.+|++.+.. .|.+-|
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---AKtalP~l--G~aIk~idvta~Gk~ilaTCk~-yllL~d 630 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---AKTALPGL--GDAIKHIDVTANGKHILATCKN-YLLLTD 630 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcch---hhhcCccc--ccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence 1222222222 245689999999999999954321 11223332 3447778999999999877654 677777
Q ss_pred CC
Q 009597 489 WK 490 (531)
Q Consensus 489 ~~ 490 (531)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 64
No 436
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.95 E-value=16 Score=37.33 Aligned_cols=197 Identities=16% Similarity=0.080 Sum_probs=106.1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCcEEEEccCCC---cceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccC-
Q 009597 295 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL- 370 (531)
Q Consensus 295 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~- 370 (531)
+++ +..+..+|.|.-.|.+++..+....... ....-.+.. ...+++++.++.++.+|.++++.+..+....
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~----~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS----DGKIYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe----CCeEEEecccceEEEEECCCCcEEEEEecCCC
Confidence 554 5555778889989999988775443332 100001111 1348889999999999999999988887665
Q ss_pred CCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCC--CCCccEEEEeCCCCEEEEEEc--CCeEEEEEcCCcc
Q 009597 371 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERF 446 (531)
Q Consensus 371 ~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--~~~v~~v~~sp~~~~l~s~s~--Dg~I~iwd~~~~~ 446 (531)
..+..-....++ .+..++.++.+...+..++...-...... ...+..--...++ .+..+.. ++.+.-+|..++.
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCc
Confidence 112222222233 34444467888888888776654433211 1111111111223 3444444 5566667776665
Q ss_pred eeceeee--ecCCc-----cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecc
Q 009597 447 QLNKKKR--FAGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH 501 (531)
Q Consensus 447 ~~~~~~~--~~~~~-----~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h 501 (531)
.....+. ..+.. .......+ .. +.-+..++.++.+...|..+++.+..+...
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v-~v--~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPV-YV--DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceE-EE--CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 4432211 11110 00000001 11 122356667788888899999888877754
No 437
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.77 E-value=3.9 Score=39.05 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=83.0
Q ss_pred EEEEECCCCceeEEEcccCCCeeEEEEecCCCEEEEEeC-C--CCEEEEEcCC----CeEEEEee-CCCCCCccEEEEeC
Q 009597 352 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-D--KSLRVWEFGI----PVVIKYIS-EPHMHSMPSISLHP 423 (531)
Q Consensus 352 I~iwd~~t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-D--g~I~iwd~~~----~~~~~~~~-~~~~~~v~~v~~sp 423 (531)
-.+||+.+++....-....--+.+-.+.++|++|++|+. + ..+++++... ........ ......-.++..-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 458999887654322223334445567789999999875 2 3588887544 11111000 11233455666678
Q ss_pred CCCEEEEEEcCCe-EEEEEcCCc-ceecee---eeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009597 424 NTNWLAAQSLDNQ-ILIYSTRER-FQLNKK---KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 498 (531)
Q Consensus 424 ~~~~l~s~s~Dg~-I~iwd~~~~-~~~~~~---~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 498 (531)
+|+.|+.|+.... ..+|.-... ...... ...........--.+-..|+|++++.+..+ -.|||..+.+.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 9999999988753 344443211 101111 101101111222236778999999988865 456799888877776
Q ss_pred ec
Q 009597 499 KC 500 (531)
Q Consensus 499 ~~ 500 (531)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 53
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.70 E-value=5.3 Score=43.99 Aligned_cols=108 Identities=14% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCCEEEEEEcCCeEEEEEcCCcc--------ee------ceeeeecCCccccceEEEEEc--CCCCEEEEEeCCCcEEEE
Q 009597 424 NTNWLAAQSLDNQILIYSTRERF--------QL------NKKKRFAGHIVAGYACQVNFS--PDGRFVMSGDGEGKCWFW 487 (531)
Q Consensus 424 ~~~~l~s~s~Dg~I~iwd~~~~~--------~~------~~~~~~~~~~~~~~v~~l~~s--pdg~~l~sgs~dg~I~iw 487 (531)
+...|+++..||.|.+|.+..-. .. ...+.+..-.....++.++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 46788999999999999763210 00 001111111123457788988 888899999888888887
Q ss_pred ECCC--CeEEEE-eeccCCcEEEEEEecCC--CC---EEEEEeCCCCEEeeC
Q 009597 488 DWKS--CKVFRT-LKCHEGVCIGCEWHPLE--QS---KVATCGWDGLIKYWD 531 (531)
Q Consensus 488 d~~~--~~~~~~-~~~h~~~V~~v~~~p~~--~~---~l~t~s~Dg~I~iWD 531 (531)
-+.. .+.... -..|...|.+|+|.+.+ .. .|++++-.|.+.+|+
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 5443 121111 11255578899998853 22 788888999988764
No 439
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.39 E-value=18 Score=36.88 Aligned_cols=196 Identities=12% Similarity=0.195 Sum_probs=109.8
Q ss_pred eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcccCCCeeEEEEec----CCCE--EEEEeC-C---CCEEEEE
Q 009597 329 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD----SNRR--FVTSSD-D---KSLRVWE 398 (531)
Q Consensus 329 ~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~h~~~I~~l~~sp----~~~~--l~s~s~-D---g~I~iwd 398 (531)
..+-+++..+...+++.....+-+.+||+. |+.++.+. .+.++.+.... .++. |+.++. + .+|++|.
T Consensus 57 PAIWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~ 133 (381)
T PF02333_consen 57 PAIWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR 133 (381)
T ss_dssp EEEE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred CcEecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence 456667777777889999999999999997 55666664 35556555432 3433 444443 2 4699997
Q ss_pred cC--CCeEEEEeeCC------CCCCccEEEEe--C-CCC-EEEEEEcCCeEEEEEcCC---cc-eeceeeeecCCccccc
Q 009597 399 FG--IPVVIKYISEP------HMHSMPSISLH--P-NTN-WLAAQSLDNQILIYSTRE---RF-QLNKKKRFAGHIVAGY 462 (531)
Q Consensus 399 ~~--~~~~~~~~~~~------~~~~v~~v~~s--p-~~~-~l~s~s~Dg~I~iwd~~~---~~-~~~~~~~~~~~~~~~~ 462 (531)
+. ++. +..+..+ ....+..+|+- | +|. ++++...+|.+..|.+.. +. .-..++.|.. .+.
T Consensus 134 id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ 209 (381)
T PF02333_consen 134 IDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQ 209 (381)
T ss_dssp EETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-
T ss_pred ecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCc
Confidence 75 333 3333211 12335667764 3 344 566778889888887752 11 1122334433 234
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeEEEEeec--cCCcEEEEEEecC--CCCE-EEEEeCCCCEEeeC
Q 009597 463 ACQVNFSPDGRFVMSGDGEGKCWFWDWKS-----CKVFRTLKC--HEGVCIGCEWHPL--EQSK-VATCGWDGLIKYWD 531 (531)
Q Consensus 463 v~~l~~spdg~~l~sgs~dg~I~iwd~~~-----~~~~~~~~~--h~~~V~~v~~~p~--~~~~-l~t~s~Dg~I~iWD 531 (531)
+-.|.......+|+.|-++.-|+-|+... ++.+....+ ....|-.+++-.. +..+ |+|.-.+++..|||
T Consensus 210 ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred ceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 66678888888999999998888888752 233433332 2346777777542 2334 44444466777775
No 440
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.20 E-value=16 Score=35.68 Aligned_cols=141 Identities=11% Similarity=0.054 Sum_probs=85.3
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEcc-cC-CCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEE---EeeCCCCCC
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEYDQ-HL-GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK---YISEPHMHS 415 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~~~-h~-~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~---~~~~~~~~~ 415 (531)
.++..+..+.-++|+|+.+...-..+.. .. +--.++.. .|++..++..|.-+.+.|+..+.... .... ....
T Consensus 97 ~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~-~~~d 173 (370)
T COG5276 97 EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PGGD 173 (370)
T ss_pred cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeecc-CCCC
Confidence 5677777888899999987653332211 11 23333443 58888888866668888987764332 2222 1222
Q ss_pred ccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCcccc-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 009597 416 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG-YACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 492 (531)
Q Consensus 416 v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 492 (531)
-..++.+ |++-..+..|+-+.|.|+.+.... .+.++...+ .+.++..+++-.+++..+. -+.+-|....
T Consensus 174 ~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP----vli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ 243 (370)
T COG5276 174 THDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP----VLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGP 243 (370)
T ss_pred ceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC----eEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCC
Confidence 2445554 788888889999999999875433 233333333 5666777777666655433 3555555443
No 441
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.17 E-value=8.9 Score=32.81 Aligned_cols=116 Identities=11% Similarity=0.076 Sum_probs=74.5
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCC--------CcEEEEccCCCcceEEEEccCC--CCCcEEEEeeCCCeEEEEECC
Q 009597 289 DISFCNDGTKFLTASYDKNIKYWDTET--------GQVIRTFSTGKIPYVVKLNPDD--DKQNILLAGMSDKKIVQWDMN 358 (531)
Q Consensus 289 ~l~fspdg~~l~s~s~Dg~I~vWd~~t--------~~~i~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~dg~I~iwd~~ 358 (531)
.-.|......|+.++.-|+|.|++... ...+..+...+.+.++...+.. .....|+.|+ ...|..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 345666666788888899999998753 3456677777777777665542 3345666665 5679999998
Q ss_pred CCceeEEEcccCCCeeEEEEec---CCCEEEEEeCCCCEEEEEcCCCeEEE
Q 009597 359 TKEITQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVIK 406 (531)
Q Consensus 359 t~~~~~~~~~h~~~I~~l~~sp---~~~~l~s~s~Dg~I~iwd~~~~~~~~ 406 (531)
...-+..-. -.+.|+++.+-. ...-++..+.+..|.-||....+...
T Consensus 82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 766544333 336677777643 22335555556777777766555443
No 442
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.62 E-value=1.1 Score=30.07 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=25.9
Q ss_pred CceEEEEEccC-C--CEEEEEecCCeEEEEeCCC
Q 009597 285 KAVRDISFCND-G--TKFLTASYDKNIKYWDTET 315 (531)
Q Consensus 285 ~~V~~l~fspd-g--~~l~s~s~Dg~I~vWd~~t 315 (531)
++|+++.|+|+ + .+|+-+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47999999985 3 4788888889999999985
No 443
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.61 E-value=20 Score=35.98 Aligned_cols=149 Identities=14% Similarity=0.188 Sum_probs=86.4
Q ss_pred cCCCeeEEEEecCCCEEEEEeCCCC------EEEEEcCC----CeEEE-----EeeCCCCC-------CccEEEEeCCCC
Q 009597 369 HLGAVNTITFVDSNRRFVTSSDDKS------LRVWEFGI----PVVIK-----YISEPHMH-------SMPSISLHPNTN 426 (531)
Q Consensus 369 h~~~I~~l~~sp~~~~l~s~s~Dg~------I~iwd~~~----~~~~~-----~~~~~~~~-------~v~~v~~sp~~~ 426 (531)
.-+.++.|.+.+++..+++.+++|. +..+++.. ...+. .+..+... ..-++++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3467889999987778888888888 66555543 11111 11111111 234788877888
Q ss_pred EEEEEEcC------CeEEEEEcCCcceecee---eee-------cCCccccceEEEEEcCCCCEEEEEeC-----CC--c
Q 009597 427 WLAAQSLD------NQILIYSTRERFQLNKK---KRF-------AGHIVAGYACQVNFSPDGRFVMSGDG-----EG--K 483 (531)
Q Consensus 427 ~l~s~s~D------g~I~iwd~~~~~~~~~~---~~~-------~~~~~~~~v~~l~~spdg~~l~sgs~-----dg--~ 483 (531)
++++.=.+ ..|..++.. +..+..+ ..+ .+.......-.|+++|+|+.|+++.+ |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77776666 788888876 3333222 111 22233455778999999997666543 22 1
Q ss_pred -------EEEE--ECCC-CeEEE----Eeec-----cCCcEEEEEEecCCCCEEE
Q 009597 484 -------CWFW--DWKS-CKVFR----TLKC-----HEGVCIGCEWHPLEQSKVA 519 (531)
Q Consensus 484 -------I~iw--d~~~-~~~~~----~~~~-----h~~~V~~v~~~p~~~~~l~ 519 (531)
++|+ |..+ ++... .+.. ....|..+.+.+ ++++|+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLv 230 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLV 230 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEE
Confidence 4554 5444 32222 2221 245678888888 555544
No 444
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=90.49 E-value=26 Score=40.94 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=45.6
Q ss_pred ecCccCceEEEEEcc--CCC-EE----EEEecCCeEEEEeCCCCcEEEE-ccCCCcceEEEEcc-CCCCCcEEEEeeCCC
Q 009597 280 YMGHSKAVRDISFCN--DGT-KF----LTASYDKNIKYWDTETGQVIRT-FSTGKIPYVVKLNP-DDDKQNILLAGMSDK 350 (531)
Q Consensus 280 l~gH~~~V~~l~fsp--dg~-~l----~s~s~Dg~I~vWd~~t~~~i~~-~~~~~~~~~~~~~~-~~~~~~~l~sg~~dg 350 (531)
..||..+|.|....- ++. +| +..+.||.+.|=|.. .++. +..+....++.+.. +.....+++..--||
T Consensus 343 gdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN---yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg 419 (1899)
T KOG4659|consen 343 GDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN---YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG 419 (1899)
T ss_pred cCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch---heeeecCCCceEEEEEecCCCccceeEEEecCcCc
Confidence 357888888877653 222 22 255679999887763 2322 33344445555542 223334566666677
Q ss_pred eEEEEECCCCce
Q 009597 351 KIVQWDMNTKEI 362 (531)
Q Consensus 351 ~I~iwd~~t~~~ 362 (531)
++.+=|..+.++
T Consensus 420 tlyvSdp~s~qv 431 (1899)
T KOG4659|consen 420 TLYVSDPLSKQV 431 (1899)
T ss_pred eEEecCCCcceE
Confidence 777766655443
No 445
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.18 E-value=16 Score=36.45 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=35.5
Q ss_pred cEEEEeeC-----CCeEEEEECCCCceeEEEccc-CCCeeEEEEecCCCEEEEEeCCCC----EEEEEcCCCeE
Q 009597 341 NILLAGMS-----DKKIVQWDMNTKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDKS----LRVWEFGIPVV 404 (531)
Q Consensus 341 ~~l~sg~~-----dg~I~iwd~~t~~~~~~~~~h-~~~I~~l~~sp~~~~l~s~s~Dg~----I~iwd~~~~~~ 404 (531)
.+++.|+. ...+..||+.+.+-...-... .......+..-++++++.|+.++. +.+||..+.+-
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 56666664 246888898765432211111 112222333346778888876643 56788877654
No 446
>PRK13684 Ycf48-like protein; Provisional
Probab=90.12 E-value=23 Score=35.77 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=85.4
Q ss_pred CCCeeEEEEecCCCEEEEEeCCCCEEE-EEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCccee
Q 009597 370 LGAVNTITFVDSNRRFVTSSDDKSLRV-WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 448 (531)
Q Consensus 370 ~~~I~~l~~sp~~~~l~s~s~Dg~I~i-wd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~ 448 (531)
.+.+.++.+.+++.++++ +..|.+.. +| ..+.....+..+....+.++.+.+++..++++ ..|.+++=....+...
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 457889999998765544 44564443 22 12222333344456788999999998876664 5676653233333322
Q ss_pred ceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec---cCCcEEEEEEecCCCCEEEEEeCCC
Q 009597 449 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDG 525 (531)
Q Consensus 449 ~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~v~~~p~~~~~l~t~s~Dg 525 (531)
..... ........+..+.+.+++..+++| .+|.|. .....++....... -......+.|.. ++..+ ..|..|
T Consensus 249 ~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~~-~~G~~G 323 (334)
T PRK13684 249 SKPII-PEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKGF-VLGQRG 323 (334)
T ss_pred ccccC-CccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CCceE-EECCCc
Confidence 21111 101112235668899988766555 566554 33444444443322 123577787776 44444 456688
Q ss_pred CEEeeC
Q 009597 526 LIKYWD 531 (531)
Q Consensus 526 ~I~iWD 531 (531)
.|--|+
T Consensus 324 ~il~~~ 329 (334)
T PRK13684 324 VLLRYV 329 (334)
T ss_pred eEEEec
Confidence 886654
No 447
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.06 E-value=25 Score=36.11 Aligned_cols=40 Identities=3% Similarity=-0.048 Sum_probs=20.0
Q ss_pred CEEEEEcCCCeEEEEeeCCC-CCCccEEEEeCCCCEEEEEEc
Q 009597 393 SLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSL 433 (531)
Q Consensus 393 ~I~iwd~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~s~s~ 433 (531)
.+.+||..+..-...-..+. ...-.++... ++++++.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 48889987765543221111 1112233333 5666666664
No 448
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.05 E-value=7.9 Score=36.39 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=64.1
Q ss_pred ceEEEEEccCCCEEE-EEecCCeEEEEe--CCCCcE-----EEEccCC-----CcceEEEEccCCCCCcEEEEeeCCCeE
Q 009597 286 AVRDISFCNDGTKFL-TASYDKNIKYWD--TETGQV-----IRTFSTG-----KIPYVVKLNPDDDKQNILLAGMSDKKI 352 (531)
Q Consensus 286 ~V~~l~fspdg~~l~-s~s~Dg~I~vWd--~~t~~~-----i~~~~~~-----~~~~~~~~~~~~~~~~~l~sg~~dg~I 352 (531)
--..|+|+.+.+.+. +-+.+-.|.-|| ..+|.. +..+... ..+--+++ +..+++++++-..++|
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I---D~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI---DTEGNLYVATFNGGTV 235 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE---ccCCcEEEEEecCcEE
Confidence 345678887766544 556677887787 566643 2222211 11112222 2356899999999999
Q ss_pred EEEECCCCceeEEEcccCCCeeEEEEec
Q 009597 353 VQWDMNTKEITQEYDQHLGAVNTITFVD 380 (531)
Q Consensus 353 ~iwd~~t~~~~~~~~~h~~~I~~l~~sp 380 (531)
...|..+|+.+.++......|+|++|--
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999999999999999999999999974
No 449
>PRK10115 protease 2; Provisional
Probab=89.94 E-value=37 Score=37.99 Aligned_cols=227 Identities=9% Similarity=0.074 Sum_probs=105.0
Q ss_pred CCCCCceeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecC------CeEEEEeCCCC--cEEEEccCCCcceE
Q 009597 259 GGEKGEHVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD------KNIKYWDTETG--QVIRTFSTGKIPYV 330 (531)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~D------g~I~vWd~~t~--~~i~~~~~~~~~~~ 330 (531)
.|.+.-.+.+.+..+++.+-....+.. ..++|.+|++.|+-...+ ..|.++++.++ +....+........
T Consensus 148 ~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~ 225 (686)
T PRK10115 148 LSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFY 225 (686)
T ss_pred CCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEE
Confidence 345555677777766654322222222 569999998866655432 36888888887 33344433222222
Q ss_pred EEEccCCCCCcEEEEee--CCCeEEEEECC--CCceeEEEcccCCCeeEEEEecCCCEEEEEeCC-C--CEEEEEcCCCe
Q 009597 331 VKLNPDDDKQNILLAGM--SDKKIVQWDMN--TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPV 403 (531)
Q Consensus 331 ~~~~~~~~~~~~l~sg~--~dg~I~iwd~~--t~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~D-g--~I~iwd~~~~~ 403 (531)
+......+...+++... .++.+.+++.. .+.....+....+....+. +..+.+++....+ . .|...++....
T Consensus 226 ~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~ 304 (686)
T PRK10115 226 VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQ 304 (686)
T ss_pred EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcc
Confidence 22222223333343332 23578888842 3332222322222222222 3333333333322 2 34444544222
Q ss_pred EEEEeeCCC-CCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC-cceeceeeeecCCccccceEEEEEc--CCCC-EEEEE
Q 009597 404 VIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFS--PDGR-FVMSG 478 (531)
Q Consensus 404 ~~~~~~~~~-~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~s--pdg~-~l~sg 478 (531)
....+.... ...|..+.+. .+.++++...++.-+++-+.. ...+..+ .+... ..+..+.++ +++. ++++.
T Consensus 305 ~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l-~~~~~---~~~~~~~~~~~~~~~~~~~~~ 379 (686)
T PRK10115 305 QWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGI-AFDDP---AYVTWIAYNPEPETSRLRYGY 379 (686)
T ss_pred cCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEe-cCCCC---ceEeeecccCCCCCceEEEEE
Confidence 223333322 3467777777 345555666677655544332 1111111 11111 112223344 3333 44443
Q ss_pred e---CCCcEEEEECCCCe
Q 009597 479 D---GEGKCWFWDWKSCK 493 (531)
Q Consensus 479 s---~dg~I~iwd~~~~~ 493 (531)
+ .-+.++.+|..+++
T Consensus 380 ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 380 SSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ecCCCCCEEEEEECCCCc
Confidence 3 34678888887754
No 450
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.42 E-value=1.3 Score=29.64 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=26.3
Q ss_pred CCeeEEEEecCCC---EEEEEeCCCCEEEEEcCCC
Q 009597 371 GAVNTITFVDSNR---RFVTSSDDKSLRVWEFGIP 402 (531)
Q Consensus 371 ~~I~~l~~sp~~~---~l~s~s~Dg~I~iwd~~~~ 402 (531)
++|.++.|+|... +|+.+-.-+.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999998554 7888888899999999963
No 451
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.27 E-value=2.5 Score=43.23 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=104.7
Q ss_pred cccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEE-EEccCCCcc---eEEE-EccCCCCCcEEEE
Q 009597 271 TFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI-RTFSTGKIP---YVVK-LNPDDDKQNILLA 345 (531)
Q Consensus 271 ~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i-~~~~~~~~~---~~~~-~~~~~~~~~~l~s 345 (531)
+..++.++.+..--..|..+-..|||+.|..-+. .++.|+++.+.... +.+-..... ..+. -...-.++.-+++
T Consensus 207 t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv 285 (733)
T COG4590 207 TTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLV 285 (733)
T ss_pred CchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEE
Confidence 3345666667777788999999999998776664 68889988654322 111111010 0000 0000113356889
Q ss_pred eeCCCeEEEE-ECCCC-c----eeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEE
Q 009597 346 GMSDKKIVQW-DMNTK-E----ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 419 (531)
Q Consensus 346 g~~dg~I~iw-d~~t~-~----~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v 419 (531)
+..||-|..| |.+.+ . .++.++....++..+.-..+.+-|++-+..|++.++.......+.. ...-..+..+
T Consensus 286 ~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~--~~~~~~~~~~ 363 (733)
T COG4590 286 VHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF--ERAYQAPQLV 363 (733)
T ss_pred EcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh--hhhhcCccee
Confidence 9999999888 54432 2 2333333334444444434455688888899988887554433322 1233467789
Q ss_pred EEeCCCCEEEEEEcCCeEEEEEcCCcc
Q 009597 420 SLHPNTNWLAAQSLDNQILIYSTRERF 446 (531)
Q Consensus 420 ~~sp~~~~l~s~s~Dg~I~iwd~~~~~ 446 (531)
+++|++.++++ -..|.|+++.+.+..
T Consensus 364 ~~Sp~~~~Ll~-e~~gki~~~~l~Nr~ 389 (733)
T COG4590 364 AMSPNQAYLLS-EDQGKIRLAQLENRN 389 (733)
T ss_pred eeCcccchhee-ecCCceEEEEecCCC
Confidence 99999999887 446789999887753
No 452
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.04 E-value=13 Score=40.59 Aligned_cols=176 Identities=13% Similarity=0.141 Sum_probs=87.6
Q ss_pred eeeeeecccCeeeEEecCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCC---cceEEEEccCCCCCc
Q 009597 265 HVEDKSTFHGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQN 341 (531)
Q Consensus 265 ~i~~~~~~~~~~~~~l~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~ 341 (531)
.|++++. .|+++..+.-....+..+.|+.+. .|++...||+++||++- |..+..+..+. ...+..+....+ +
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~-G- 139 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHN-G- 139 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecC-c-
Confidence 4555554 456665555445589999999776 47788899999999974 33333322211 111222222211 1
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEEcc-cCC--CeeEEEEecCCCE---EEEEe-CCCCEEEEEcCCCe-EEEEeeCCCC
Q 009597 342 ILLAGMSDKKIVQWDMNTKEITQEYDQ-HLG--AVNTITFVDSNRR---FVTSS-DDKSLRVWEFGIPV-VIKYISEPHM 413 (531)
Q Consensus 342 ~l~sg~~dg~I~iwd~~t~~~~~~~~~-h~~--~I~~l~~sp~~~~---l~s~s-~Dg~I~iwd~~~~~-~~~~~~~~~~ 413 (531)
+++-..+|.|.+-.-.......++.. ... +-+|-+..+++.. ++-.. ..+ ..++-..... ....+.. ..
T Consensus 140 -Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~-~~ 216 (829)
T KOG2280|consen 140 -VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW-PN 216 (829)
T ss_pred -eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC-CC
Confidence 44444455554443222222222221 111 1133333333221 11111 011 1111111111 1112222 23
Q ss_pred CCccEEEEeCCCCEEEEEEcCCeEEEEEcCCccee
Q 009597 414 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 448 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~ 448 (531)
..+..+..+|+..+|+.-...|.|.+-+......+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 56778899999999999999999999887765443
No 453
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.01 E-value=14 Score=38.77 Aligned_cols=116 Identities=15% Similarity=0.179 Sum_probs=63.7
Q ss_pred EcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeE--EEEee----CCCCCCccEEEEeCCC------CEEEEEE-
Q 009597 366 YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--IKYIS----EPHMHSMPSISLHPNT------NWLAAQS- 432 (531)
Q Consensus 366 ~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~--~~~~~----~~~~~~v~~v~~sp~~------~~l~s~s- 432 (531)
+......-+.|+|.|++++|++--..|.|++++-..... +..+. .........|+++|+- .+|.+..
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 333456678999999998777765579999998654432 21111 1135668899999874 3444432
Q ss_pred ---------cCCeEEEEEcCCc-ceec-eeeeecCC--ccccceEEEEEcCCCCEEEEEeCC
Q 009597 433 ---------LDNQILIYSTRER-FQLN-KKKRFAGH--IVAGYACQVNFSPDGRFVMSGDGE 481 (531)
Q Consensus 433 ---------~Dg~I~iwd~~~~-~~~~-~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~d 481 (531)
....|.-|.+... ..+. ....+.+. .....-..|.|.|||.++++.++.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555554321 1111 11111111 001224458899999877655443
No 454
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.95 E-value=9.7 Score=39.20 Aligned_cols=140 Identities=13% Similarity=0.059 Sum_probs=79.8
Q ss_pred eEEEEecCCCEEEEEeCCCCEEEEEcCCCe--EEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceecee
Q 009597 374 NTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 451 (531)
Q Consensus 374 ~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 451 (531)
+.+-|...++.+++ ...|.+.=|.+..+. ....+.....++|.++.|++|.+.|++.-.+.+|.+++.........
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~- 103 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE- 103 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH-
Confidence 44555544444443 344556667665432 12222223566999999999999999999999999998743221110
Q ss_pred eeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeeccCCcEEEEEEecCCCCEE
Q 009597 452 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKV 518 (531)
Q Consensus 452 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~l 518 (531)
...........|...+|+.+ .-++..+..| +-+|-+.. .+.++..+.|.-.|.=..|.+ +...+
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~ 168 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVI 168 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceE
Confidence 11111111233777888766 3444444443 45554432 234455556666777777887 54443
No 455
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.26 E-value=22 Score=36.38 Aligned_cols=143 Identities=8% Similarity=0.107 Sum_probs=76.1
Q ss_pred CceEEEEEccCCCEEEEEe-----------cCC-eEEEEeCCC--CcE--EEEccC-CCcceEEEEccCCCCCcEEEEee
Q 009597 285 KAVRDISFCNDGTKFLTAS-----------YDK-NIKYWDTET--GQV--IRTFST-GKIPYVVKLNPDDDKQNILLAGM 347 (531)
Q Consensus 285 ~~V~~l~fspdg~~l~s~s-----------~Dg-~I~vWd~~t--~~~--i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~ 347 (531)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...|.. -..+..+.+.. .+ |+++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~---~G--lyV~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV---GG--VYVAT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec---CC--EEEeC
Confidence 4578899999998766642 223 677776432 322 223322 22233344433 22 44444
Q ss_pred CCCeEEEEECCCC-----c--ee-EEEcc----cCCCeeEEEEecCCCEEEEEeCC-------------------CCEEE
Q 009597 348 SDKKIVQWDMNTK-----E--IT-QEYDQ----HLGAVNTITFVDSNRRFVTSSDD-------------------KSLRV 396 (531)
Q Consensus 348 ~dg~I~iwd~~t~-----~--~~-~~~~~----h~~~I~~l~~sp~~~~l~s~s~D-------------------g~I~i 396 (531)
....+++.|.... + .+ ..+.. +....+.+.|.|+|.+.++.+.. |.|.-
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4443334454321 1 11 22222 23457789999999887765521 34555
Q ss_pred EEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcC
Q 009597 397 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 434 (531)
Q Consensus 397 wd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~D 434 (531)
++...... ..+.. .......++|+|+|+++++-..+
T Consensus 169 ~~pdg~~~-e~~a~-G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 169 YNPDGGKL-RVVAH-GFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EecCCCeE-EEEec-CcCCCccceECCCCCEEEEccCC
Confidence 55554432 33333 23456789999999988765433
No 456
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.90 E-value=10 Score=42.38 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=47.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECC----------CCe---EEEEe--------eccCCcEEEEEEecCC--CCEE
Q 009597 462 YACQVNFSPDGRFVMSGDGEGKCWFWDWK----------SCK---VFRTL--------KCHEGVCIGCEWHPLE--QSKV 518 (531)
Q Consensus 462 ~v~~l~~spdg~~l~sgs~dg~I~iwd~~----------~~~---~~~~~--------~~h~~~V~~v~~~p~~--~~~l 518 (531)
.|..|.++|+|.+|+..+..|.+ |..+. .++ ..+++ ..+...|..+.|||.. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 47789999999999988886643 33332 111 11222 1234578999999953 4678
Q ss_pred EEEeCCCCEEeeC
Q 009597 519 ATCGWDGLIKYWD 531 (531)
Q Consensus 519 ~t~s~Dg~I~iWD 531 (531)
+.-..|++||+||
T Consensus 165 ~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 165 VVLTSDNTLRLYD 177 (717)
T ss_pred EEEecCCEEEEEe
Confidence 8888899999997
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.82 E-value=3.3 Score=39.00 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=46.8
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------e-------ccCCcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 467 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-------K-------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 467 ~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~-------~-------~h~~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.+..++.+|++-+.+|.+++||+.+++.+..- . .....|..+.+.. ++.-|++-+ +|..+.||
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEec
Confidence 35567899999999999999999988765432 1 2445788888886 666666665 57777775
No 458
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.44 E-value=3.2 Score=39.16 Aligned_cols=73 Identities=8% Similarity=0.109 Sum_probs=50.5
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeee----ecC-----CccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009597 419 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR----FAG-----HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 489 (531)
Q Consensus 419 v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~~-----~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 489 (531)
+.+..++.+|++.+.+|.+++||+.+.+.+..... +.. ......|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 33555789999999999999999998765432211 110 02345577888898888776654 578899986
Q ss_pred CCC
Q 009597 490 KSC 492 (531)
Q Consensus 490 ~~~ 492 (531)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 543
No 459
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.26 E-value=0.11 Score=53.18 Aligned_cols=143 Identities=9% Similarity=0.128 Sum_probs=98.0
Q ss_pred eEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEE-EEEcCCeEEEEEcCCcceeceee
Q 009597 374 NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA-AQSLDNQILIYSTRERFQLNKKK 452 (531)
Q Consensus 374 ~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~s~Dg~I~iwd~~~~~~~~~~~ 452 (531)
-...|-+.+.-++.++.+..+..||-...... .+ ........++|.-++..++ .+-..+.+.+||+.+......
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL-- 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-EL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL-- 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceec-cc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH--
Confidence 34567777777888888999999986543222 21 2344556677777666554 455678999999976532211
Q ss_pred eecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCCcEEEEEEecCCCCEEEEEeCCCC
Q 009597 453 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 526 (531)
Q Consensus 453 ~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l~t~s~Dg~ 526 (531)
.+.+..... . +.|++.+..++.|...|.+.|++..+.+.+-..-.|...+++++|.+ + .+.+.++.|..
T Consensus 113 E~gg~~s~s-l--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l-E-d~vil~dcd~~ 181 (615)
T KOG2247|consen 113 ESGGTSSKS-L--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL-E-DYVILCDCDNT 181 (615)
T ss_pred hccCcchHH-H--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc-c-ceeeecCcHHH
Confidence 122221111 2 67999999999999999999999888777666655888999999998 4 35666666654
No 460
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.67 E-value=13 Score=37.42 Aligned_cols=107 Identities=13% Similarity=0.202 Sum_probs=55.8
Q ss_pred CeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeE---EEEe---eCCCCCCccEEEEeCC----CCEEEEEEcC-------
Q 009597 372 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---IKYI---SEPHMHSMPSISLHPN----TNWLAAQSLD------- 434 (531)
Q Consensus 372 ~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~---~~~~---~~~~~~~v~~v~~sp~----~~~l~s~s~D------- 434 (531)
.-+.|+|.|+++.|++ ...|.|++++ ..+.. +..+ ..........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5599999999 34333 2222 1223456789999994 3333333322
Q ss_pred -CeEEEEEcCCc-ceec----eeeeecC-CccccceEEEEEcCCCCEEEEEeC
Q 009597 435 -NQILIYSTRER-FQLN----KKKRFAG-HIVAGYACQVNFSPDGRFVMSGDG 480 (531)
Q Consensus 435 -g~I~iwd~~~~-~~~~----~~~~~~~-~~~~~~v~~l~~spdg~~l~sgs~ 480 (531)
..|.-|..... ..+. .+..... .........|.|.|||.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 24444544332 1111 1111111 011233556999999977666554
No 461
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.39 E-value=34 Score=33.41 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=92.7
Q ss_pred ccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc---EEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCC
Q 009597 283 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 359 (531)
Q Consensus 283 H~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~---~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t 359 (531)
-.+-+.++.++. ++...+..+.-++|.|+.+.. .+..+...+..+++.+. +++..++..+.-+.+.|+.+
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs-----Gn~aYVadlddgfLivdvsd 157 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS-----GNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec-----CCEEEEeeccCcEEEEECCC
Confidence 455677888864 456666677789999997654 33333333333444333 35677777677777888865
Q ss_pred C---ceeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCC-CccEEEEeCCCCEEEEEEcCC
Q 009597 360 K---EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDN 435 (531)
Q Consensus 360 ~---~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~s~s~Dg 435 (531)
. .+...+......-..++.+ |++-..+..|+-+.|-|+..+.....+..-... .+.++..+++-.+++.. +-
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~e 233 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DE 233 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--cc
Confidence 4 3344444444444566665 777777888999999999876554444332333 56777777665554443 33
Q ss_pred eEEEEEcCCc
Q 009597 436 QILIYSTRER 445 (531)
Q Consensus 436 ~I~iwd~~~~ 445 (531)
-+.+-|..+.
T Consensus 234 gvlivd~s~~ 243 (370)
T COG5276 234 GVLIVDVSGP 243 (370)
T ss_pred ceEEEecCCC
Confidence 4555555443
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.32 E-value=3.7 Score=26.82 Aligned_cols=40 Identities=35% Similarity=0.496 Sum_probs=29.7
Q ss_pred cCCCEEEE-EecCCeEEEEeCCCCcEEEEccCCCcceEEEE
Q 009597 294 NDGTKFLT-ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 333 (531)
Q Consensus 294 pdg~~l~s-~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~ 333 (531)
|++++|++ ...+++|.++|..+++.+..+..+..+..+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 46665555 44578999999999999988887766655544
No 463
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.13 E-value=58 Score=36.92 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=48.2
Q ss_pred CCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceecee----e------eec--CC--ccccceEEEEEcCCCCEEEEEe
Q 009597 414 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK----K------RFA--GH--IVAGYACQVNFSPDGRFVMSGD 479 (531)
Q Consensus 414 ~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~----~------~~~--~~--~~~~~v~~l~~spdg~~l~sgs 479 (531)
..|.+++...-+..++....||+|.++|-.+...+... . .+. |- .....+..++|||.+..++.-+
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 34667776667889999999999999998775443322 0 000 00 0001233488999999999999
Q ss_pred CCCcEE
Q 009597 480 GEGKCW 485 (531)
Q Consensus 480 ~dg~I~ 485 (531)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888865
No 464
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.99 E-value=0.11 Score=53.29 Aligned_cols=143 Identities=15% Similarity=0.230 Sum_probs=92.0
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcc
Q 009597 289 DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 368 (531)
Q Consensus 289 ~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~ 368 (531)
...|.+.+.-++.++.+..|..||- .++.+..... +..++.+.++-.....++.+-..+.+.+||+.+....+.-.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~--tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNP--TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhh-hcceecccCC--chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 3456666555777777888888884 4444444322 223444444444446777888899999999975432111111
Q ss_pred cCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCe
Q 009597 369 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 436 (531)
Q Consensus 369 h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~ 436 (531)
....-.-+.|++....++.+...+.+.|+..++.+.+.... .|..+++++++.+.+..+ .++.|..
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~vi-l~dcd~~ 181 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDYVI-LCDCDNT 181 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccceee-ecCcHHH
Confidence 11122227889888889999899999999988876554442 288899999999876544 4444443
No 465
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.71 E-value=38 Score=33.33 Aligned_cols=222 Identities=10% Similarity=0.106 Sum_probs=119.7
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCC------CC-cEEEEccC------CCcceEEEEccCC---------CCCcEE
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTE------TG-QVIRTFST------GKIPYVVKLNPDD---------DKQNIL 343 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~------t~-~~i~~~~~------~~~~~~~~~~~~~---------~~~~~l 343 (531)
.-+.|+|+|.+.+-++....+...+||.. .. .++-++.. ...+.-+.|+... .....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999988777777777899999986 11 23333331 1123333343221 112357
Q ss_pred EEeeCCCeEEEEECCCCce-----eEEEccc-CCCe-eEEEEec--CCCEEEEE-eCCCCEEEEEcCCCeEEE--EeeCC
Q 009597 344 LAGMSDKKIVQWDMNTKEI-----TQEYDQH-LGAV-NTITFVD--SNRRFVTS-SDDKSLRVWEFGIPVVIK--YISEP 411 (531)
Q Consensus 344 ~sg~~dg~I~iwd~~t~~~-----~~~~~~h-~~~I-~~l~~sp--~~~~l~s~-s~Dg~I~iwd~~~~~~~~--~~~~~ 411 (531)
+.++.||+|.-|...-... ...+... .+.| ..+++.. .+.+|..+ -..++|.+||-.-..... .+..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8899999999998532211 1222211 2333 3455543 34455444 457889999854322110 01110
Q ss_pred ---CCCCccEEEEeCCCCEEEE-------------EEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcC-----
Q 009597 412 ---HMHSMPSISLHPNTNWLAA-------------QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP----- 470 (531)
Q Consensus 412 ---~~~~v~~v~~sp~~~~l~s-------------~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp----- 470 (531)
....-..|.-- .++++++ +.--|.|-+||+.... +.++ ...+.... ...|+..|
T Consensus 184 ~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l-~~r~-as~g~LNa--PWG~a~APa~FG~ 258 (336)
T TIGR03118 184 ALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQL-LRRV-ASSGRLNA--PWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcE-EEEe-ccCCcccC--CceeeeChhhhCC
Confidence 00000001000 1222222 2334689999986532 2222 12233333 33456544
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCeEEEEeeccCC------cEEEEEEec
Q 009597 471 -DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG------VCIGCEWHP 512 (531)
Q Consensus 471 -dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~------~V~~v~~~p 512 (531)
.|.+|+---.||+|..+|..+++.+..+....+ .++.+.|..
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 577777767899999999999998888875443 346677765
No 466
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.67 E-value=61 Score=35.62 Aligned_cols=234 Identities=11% Similarity=0.122 Sum_probs=114.6
Q ss_pred EEccCCCEEEEEecCCeEEEEeC-CCCcEEEEccCCCcc--eEEEEccCCCCCcEEEEeeCCCe-EEEEECCCC------
Q 009597 291 SFCNDGTKFLTASYDKNIKYWDT-ETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKK-IVQWDMNTK------ 360 (531)
Q Consensus 291 ~fspdg~~l~s~s~Dg~I~vWd~-~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~dg~-I~iwd~~t~------ 360 (531)
.++|+.+.+-.|=....|.-|=+ .|.+.+..+...... .|+......+...+.++|-.++. -++-.+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 56667665554443334444433 355666666544443 33333333333356666644443 343333222
Q ss_pred -----c--eeEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCC--eEEEEeeCCCCCC------ccEEEEeCCC
Q 009597 361 -----E--ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHS------MPSISLHPNT 425 (531)
Q Consensus 361 -----~--~~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~~~~------v~~v~~sp~~ 425 (531)
+ ...++. -...|..|.|.++++.+++...+|.|.+||.... ..+..+...+... |.....-...
T Consensus 114 ~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~ 192 (670)
T PF10395_consen 114 GTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGK 192 (670)
T ss_pred cccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCC
Confidence 1 112222 3578999999999999999999999999999322 1111222112221 1111111123
Q ss_pred CEEEEEEc-CC---eEEEEEcCC-cceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 009597 426 NWLAAQSL-DN---QILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 500 (531)
Q Consensus 426 ~~l~s~s~-Dg---~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 500 (531)
.++++.+. ++ ..+++.+.. ...+..+.....+.....-+.+++. +|.+..- .++.|.+|++...+...++.-
T Consensus 193 ~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 193 DLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred ceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence 45555444 32 466777611 1111111100111111112224444 4544333 677999999998887777653
Q ss_pred c----C--CcEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 501 H----E--GVCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 501 h----~--~~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
. . ..+.++. .|...+.|++. ++.|.+.|
T Consensus 270 ~~ii~~~~~~~vSl~-~~s~nRvLLs~--~nkIyLld 303 (670)
T PF10395_consen 270 PSIIDKESDDLVSLK-PPSPNRVLLSV--NNKIYLLD 303 (670)
T ss_pred chhhccccccceEee-cCCCCeEEEEc--CCEEEEEe
Confidence 2 1 1222332 12233445443 56777764
No 467
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.49 E-value=36 Score=32.79 Aligned_cols=112 Identities=13% Similarity=0.196 Sum_probs=67.4
Q ss_pred CCeeEEEEecCCCEEEEEeCCCCEEEEE-cCCCeEE-EEeeCCCCC-CccEEEEeCCCCEEEEEEc---CCeEEEEEcCC
Q 009597 371 GAVNTITFVDSNRRFVTSSDDKSLRVWE-FGIPVVI-KYISEPHMH-SMPSISLHPNTNWLAAQSL---DNQILIYSTRE 444 (531)
Q Consensus 371 ~~I~~l~~sp~~~~l~s~s~Dg~I~iwd-~~~~~~~-~~~~~~~~~-~v~~v~~sp~~~~l~s~s~---Dg~I~iwd~~~ 444 (531)
..+..-.|.+++...+....+...+++. ...+... ..+...... .|..+.++|+|..++.... ++.|.|--+..
T Consensus 66 ~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 66 GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 3777889999987777666666667763 2233221 122222222 8999999999999888773 46777665431
Q ss_pred ---c--ceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCc
Q 009597 445 ---R--FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 483 (531)
Q Consensus 445 ---~--~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 483 (531)
+ ..+....... ......+..+.|.+++.+++.+...+.
T Consensus 146 ~~~g~~~~l~~~~~~~-~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 146 DGDGVPRRLTGPRRVA-PPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred CCCCCcceeccceEec-ccccCcceeeeecCCCEEEEEeCCCCC
Confidence 1 1111111111 111345788999999998887765443
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.23 E-value=46 Score=34.51 Aligned_cols=119 Identities=12% Similarity=0.114 Sum_probs=73.9
Q ss_pred cCccCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEcc--C-CCcceEEEEccCCCCCcEEEEeeCCCeEEEEEC
Q 009597 281 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS--T-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 357 (531)
Q Consensus 281 ~gH~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~--~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~ 357 (531)
+...++|.+|.||+|.+.||.--.|++|.+++....+....+. + .+...+..|.|.+.. -++.-...| +-+|-+
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQV 139 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEE
Confidence 4567799999999999999999999999999984433322221 1 122345666666542 244333333 444443
Q ss_pred CC-CceeEEEcccCCCeeEEEEecCCCEEEEEe--CCCCEEEEEcCCC
Q 009597 358 NT-KEITQEYDQHLGAVNTITFVDSNRRFVTSS--DDKSLRVWEFGIP 402 (531)
Q Consensus 358 ~t-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s--~Dg~I~iwd~~~~ 402 (531)
.. ...++..+.|...|+-..|.++.+.++.++ ..+++.=+-++++
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 22 234555667888899999999887654443 3444444555444
No 469
>PLN02153 epithiospecifier protein
Probab=84.64 E-value=47 Score=33.43 Aligned_cols=146 Identities=8% Similarity=0.037 Sum_probs=69.3
Q ss_pred CCCEEEEEecC-----CeEEEEeCCCCcEEEEccC-----CCcceEEEEccCCCCCcEEEEeeCC-----------CeEE
Q 009597 295 DGTKFLTASYD-----KNIKYWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLAGMSD-----------KKIV 353 (531)
Q Consensus 295 dg~~l~s~s~D-----g~I~vWd~~t~~~i~~~~~-----~~~~~~~~~~~~~~~~~~l~sg~~d-----------g~I~ 353 (531)
++++++.|+.+ ..+.+||+.+.+-...-.. ............ ++.+++.|+.+ ..|.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEE
Confidence 45566666643 3577888877654322111 111111111111 23567777653 2577
Q ss_pred EEECCCCceeEEEccc----CCC-eeEEEEecCCCEEEEEeCC-------------CCEEEEEcCCCeEEEEeeC---CC
Q 009597 354 QWDMNTKEITQEYDQH----LGA-VNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIPVVIKYISE---PH 412 (531)
Q Consensus 354 iwd~~t~~~~~~~~~h----~~~-I~~l~~sp~~~~l~s~s~D-------------g~I~iwd~~~~~~~~~~~~---~~ 412 (531)
+||+.+.+-.. +... ... -.+++. -++++++.++.+ ..|.+||..+.+-...-.. +.
T Consensus 163 ~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~ 240 (341)
T PLN02153 163 AYNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS 240 (341)
T ss_pred EEECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence 88887654322 1111 111 112222 256666665432 3588899887654432211 11
Q ss_pred CCCccEEEEeCCCCEEEEEEcC--------------CeEEEEEcCCc
Q 009597 413 MHSMPSISLHPNTNWLAAQSLD--------------NQILIYSTRER 445 (531)
Q Consensus 413 ~~~v~~v~~sp~~~~l~s~s~D--------------g~I~iwd~~~~ 445 (531)
.....+++ .-++++++.|+.. +.|..||..+.
T Consensus 241 ~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 241 ARSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CcceeeeE-EECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 11112222 2256777777742 25778887653
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.34 E-value=7.2 Score=45.22 Aligned_cols=139 Identities=12% Similarity=0.177 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCeEEEEeeCCCCCCccEEEE--------eCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecC----C
Q 009597 390 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISL--------HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG----H 457 (531)
Q Consensus 390 ~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~--------sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~----~ 457 (531)
.|+.+.+|++.++.....+.. ..+.|..|.+ -|.=+++++.+.--.|.++-+.-.........+.. .
T Consensus 97 iDn~L~lWny~~~~e~~~~d~-~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDG-LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCccccccc-hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 477899999998766555533 4555555443 22334555555556666665432211111111222 2
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEEC--CC---Ce-E----------------EEEee-ccCCcEEEEEEecCC
Q 009597 458 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW--KS---CK-V----------------FRTLK-CHEGVCIGCEWHPLE 514 (531)
Q Consensus 458 ~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~--~~---~~-~----------------~~~~~-~h~~~V~~v~~~p~~ 514 (531)
..+..|.++....+|+.+++|- ||.|+=.-. .. ++ + +-.+. .+..+|..+.... .
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-S 253 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-c
Confidence 3355688888888998887665 444432111 11 01 1 11223 4567899999987 6
Q ss_pred CCEEEEEeCCCCEEeeC
Q 009597 515 QSKVATCGWDGLIKYWD 531 (531)
Q Consensus 515 ~~~l~t~s~Dg~I~iWD 531 (531)
..++.+-+.-|+|.+||
T Consensus 254 R~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYD 270 (1311)
T ss_pred cceeeeeccCceEEEEE
Confidence 67889999999999996
No 471
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.56 E-value=56 Score=33.46 Aligned_cols=200 Identities=11% Similarity=0.164 Sum_probs=108.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceE-E--EEccCCCCCcEEEEeeCC---CeEEEEECC--CCceeEEE
Q 009597 295 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV-V--KLNPDDDKQNILLAGMSD---KKIVQWDMN--TKEITQEY 366 (531)
Q Consensus 295 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~-~--~~~~~~~~~~~l~sg~~d---g~I~iwd~~--t~~~~~~~ 366 (531)
...+++.....+-+.+||+. |+.+..+..+....+ + .|......-.++++...+ ..|++|.+. ++. +..+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 45678888888899999985 566666655543322 1 122222211233444433 479999775 333 3333
Q ss_pred cc-------cCCCeeEEEEe--c-CCC-EEEEEeCCCCEEEEEcC---CC----eEEEEeeCCCCCCccEEEEeCCCCEE
Q 009597 367 DQ-------HLGAVNTITFV--D-SNR-RFVTSSDDKSLRVWEFG---IP----VVIKYISEPHMHSMPSISLHPNTNWL 428 (531)
Q Consensus 367 ~~-------h~~~I~~l~~s--p-~~~-~l~s~s~Dg~I~iwd~~---~~----~~~~~~~~~~~~~v~~v~~sp~~~~l 428 (531)
.. ....+..+|+- + ++. +.+....+|.+..|.+. .+ +.++.+.. ...+-.|........|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccCCE
Confidence 21 12345667664 3 344 56667788988888764 22 34555543 3468888888888899
Q ss_pred EEEEcCCeEEEEEcCCcc--eeceeeeecCCccccceEEEEEc--CCC-CEEE-EEeCCCcEEEEECCC-CeEEEEe
Q 009597 429 AAQSLDNQILIYSTRERF--QLNKKKRFAGHIVAGYACQVNFS--PDG-RFVM-SGDGEGKCWFWDWKS-CKVFRTL 498 (531)
Q Consensus 429 ~s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~v~~l~~s--pdg-~~l~-sgs~dg~I~iwd~~~-~~~~~~~ 498 (531)
..+-.+--|.-|+..-.. ....+....+......+-.|++- .++ .||+ |.-.++...||+... ...+..|
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 999999888888876321 11112222332233445556653 333 3444 444678899999764 3444444
No 472
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.39 E-value=20 Score=37.35 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=24.9
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009597 461 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 461 ~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 491 (531)
..+.+++..+..+.|++-+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3388899999889999999999999999974
No 473
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.33 E-value=65 Score=36.95 Aligned_cols=133 Identities=12% Similarity=0.116 Sum_probs=72.8
Q ss_pred CCeEEEEEC-CCCceeEEEcccCCCe--eEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCC-CCCccEEEEeCC
Q 009597 349 DKKIVQWDM-NTKEITQEYDQHLGAV--NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPN 424 (531)
Q Consensus 349 dg~I~iwd~-~t~~~~~~~~~h~~~I--~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~~~v~~v~~sp~ 424 (531)
+|.++.|++ +.++.+.-+ |.-.+ .-.+..|-..++++| ....+++||+...+.++.....+ ...|+.+++ .
T Consensus 911 ~g~~ytyk~~~~g~~lell--h~T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~ 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELL--HKTEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--Y 985 (1205)
T ss_pred CCceEEEEEEecCceeeee--eccCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--c
Confidence 455677765 333422222 22222 223556655555554 45679999998776554443222 344555555 4
Q ss_pred CCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009597 425 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 489 (531)
Q Consensus 425 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 489 (531)
+..+++|...-.+.++..+... +.+..+.......+++++.+ -|...++.++.-|.+++..+
T Consensus 986 ~~RI~VgD~qeSV~~~~y~~~~--n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 986 GARIVVGDIQESVHFVRYRRED--NQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred ceEEEEeeccceEEEEEEecCC--CeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEEC
Confidence 6667777766666554433211 22334444444555665444 35556777888888877654
No 474
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.90 E-value=6 Score=42.92 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=45.3
Q ss_pred CCCCEEEEEEcCCeEEEEEcCC----cceece-----------eeeec------CCccccceEEEEEcC----CCCEEEE
Q 009597 423 PNTNWLAAQSLDNQILIYSTRE----RFQLNK-----------KKRFA------GHIVAGYACQVNFSP----DGRFVMS 477 (531)
Q Consensus 423 p~~~~l~s~s~Dg~I~iwd~~~----~~~~~~-----------~~~~~------~~~~~~~v~~l~~sp----dg~~l~s 477 (531)
++...|+++..||.+....... +..... +..+. .......+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677788888899888887654 111100 00000 011123345566666 7789999
Q ss_pred EeCCCcEEEEECCCCeEEEEe
Q 009597 478 GDGEGKCWFWDWKSCKVFRTL 498 (531)
Q Consensus 478 gs~dg~I~iwd~~~~~~~~~~ 498 (531)
-+.|++||+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996665
No 475
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.86 E-value=51 Score=32.49 Aligned_cols=157 Identities=11% Similarity=0.158 Sum_probs=84.4
Q ss_pred EEEEEecCCeEEEEeCCCCcE-----EEEccCCC--cc-eEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeE--EEc
Q 009597 298 KFLTASYDKNIKYWDTETGQV-----IRTFSTGK--IP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYD 367 (531)
Q Consensus 298 ~l~s~s~Dg~I~vWd~~t~~~-----i~~~~~~~--~~-~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~--~~~ 367 (531)
.++.++.||+|.-|...-+.. +..+.... .+ .-+.+........+.++-...++|.+||-.-..... .+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367889999999998532221 12222111 11 223344333333455555678899999854322110 010
Q ss_pred cc-----CCCeeEEEEecCCCEEE-------------EEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeC------
Q 009597 368 QH-----LGAVNTITFVDSNRRFV-------------TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP------ 423 (531)
Q Consensus 368 ~h-----~~~I~~l~~sp~~~~l~-------------s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp------ 423 (531)
.. -.+. .|.-. .+++++ .+..-|.|-+||+.-.-..+.-....-..-..++..|
T Consensus 182 DP~iPagyAPF-nIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAPF-NVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCCc-ceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 00 0010 11110 122222 2334568999998755443333444555667777766
Q ss_pred CCCEEEEEEcCCeEEEEEcCCcceeceeeeecC
Q 009597 424 NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG 456 (531)
Q Consensus 424 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 456 (531)
.+.+|+----||+|..||..++..+..+....+
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 577788777899999999988765544444333
No 476
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.77 E-value=20 Score=37.63 Aligned_cols=81 Identities=7% Similarity=0.071 Sum_probs=52.8
Q ss_pred CccEEEEeCCCCEEEEEEcCCeEEEEEc---------CCcceeceeee------ecCCccccceEEEEEcCCC---CEEE
Q 009597 415 SMPSISLHPNTNWLAAQSLDNQILIYST---------RERFQLNKKKR------FAGHIVAGYACQVNFSPDG---RFVM 476 (531)
Q Consensus 415 ~v~~v~~sp~~~~l~s~s~Dg~I~iwd~---------~~~~~~~~~~~------~~~~~~~~~v~~l~~spdg---~~l~ 476 (531)
.|..+..++.|..++..+.+|.+.++=- .+++.....++ +......-.+.+++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4667888999999999999997766531 12221111111 1111123446678999975 6777
Q ss_pred EEeCCCcEEEEECCCCeEE
Q 009597 477 SGDGEGKCWFWDWKSCKVF 495 (531)
Q Consensus 477 sgs~dg~I~iwd~~~~~~~ 495 (531)
.-+.|..||+||+...+.+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 8888999999998765544
No 477
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.70 E-value=65 Score=32.86 Aligned_cols=108 Identities=9% Similarity=0.020 Sum_probs=65.2
Q ss_pred cEEEEeeCCCeEEEEECCCCceeEEEccc--CCCeeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccE
Q 009597 341 NILLAGMSDKKIVQWDMNTKEITQEYDQH--LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 418 (531)
Q Consensus 341 ~~l~sg~~dg~I~iwd~~t~~~~~~~~~h--~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~ 418 (531)
..++++..+|.|.-+|..++..+.....- ...+.+-.+..+|+ ++.++.++.+..+|.+++..+-.........+..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 35777788999999999998866544332 13344434444565 7778888889999998887766554422000111
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEcCCcceece
Q 009597 419 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 450 (531)
Q Consensus 419 v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 450 (531)
...- ....+..++.++.+...+..++.....
T Consensus 148 ~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 148 PPVV-GDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred CcEE-cCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 1111 223344444678888888877765433
No 478
>PLN02193 nitrile-specifier protein
Probab=81.00 E-value=81 Score=33.50 Aligned_cols=149 Identities=11% Similarity=0.054 Sum_probs=71.2
Q ss_pred cEEEEeeCC-------CeEEEEECCCCceeEEEccc---CC--CeeEEEEecCCCEEEEEeCC-----CCEEEEEcCCCe
Q 009597 341 NILLAGMSD-------KKIVQWDMNTKEITQEYDQH---LG--AVNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPV 403 (531)
Q Consensus 341 ~~l~sg~~d-------g~I~iwd~~t~~~~~~~~~h---~~--~I~~l~~sp~~~~l~s~s~D-----g~I~iwd~~~~~ 403 (531)
.+++.|+.+ ..+.+||+.+.+-.. +... .. ........-++.+++.|+.+ ..+.+||+.+.+
T Consensus 177 ~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 177 KIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred EEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 566666643 247788887654332 1110 00 11111222356667777654 358888988765
Q ss_pred EEEEeeC---CCCCCccEEEEeCCCCEEEEEEcCC-----eEEEEEcCCcceeceeeeecCC-ccccceEEEEEcCCCCE
Q 009597 404 VIKYISE---PHMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRF 474 (531)
Q Consensus 404 ~~~~~~~---~~~~~v~~v~~sp~~~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~ 474 (531)
....... +....-.+++. -++++++.|+.++ .+..||+.+..= ..+...... ....... ++ .-++++
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~~~-~~-~~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGGAG-LE-VVQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCCcE-EE-EECCcE
Confidence 4332111 11111222222 2566667776543 466777765321 111110000 0011111 11 235677
Q ss_pred EEEEeCC----CcEEEEECCCCeE
Q 009597 475 VMSGDGE----GKCWFWDWKSCKV 494 (531)
Q Consensus 475 l~sgs~d----g~I~iwd~~~~~~ 494 (531)
++.|+.+ ..+.+||+.+.+-
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEE
Confidence 7777655 4589999887654
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.06 E-value=23 Score=41.38 Aligned_cols=153 Identities=17% Similarity=0.250 Sum_probs=84.9
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC-CcceEEE-EccCC-----CCCcEEEEeeCCCeEEEEEC--
Q 009597 287 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVK-LNPDD-----DKQNILLAGMSDKKIVQWDM-- 357 (531)
Q Consensus 287 V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~-~~~~~-----~~~~~l~sg~~dg~I~iwd~-- 357 (531)
=..+-+-|.=.+.. .+-|+.+.+|+.+++.....+..- +....+. +.|.+ .-+++|+.++ --.|.++-+
T Consensus 81 ~~~mGiFpeI~RaW-iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 81 KTDMGIFPEIGRAW-ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSF 158 (1311)
T ss_pred eeeeccchhhcceE-EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEe
Confidence 33444445422233 234789999999987666555432 2222222 22211 1123344333 334444433
Q ss_pred --CCCce-----eEEEcccCCCeeEEEEecCCCEEEEEeCCCCEEEEEcC----CC---e-E----------------EE
Q 009597 358 --NTKEI-----TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG----IP---V-V----------------IK 406 (531)
Q Consensus 358 --~t~~~-----~~~~~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~----~~---~-~----------------~~ 406 (531)
.++.. ...+....-.|+|+....+|+.|++|-++ .||.+. .+ + + +.
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 12111 11223335678899988888877776544 555541 11 0 0 11
Q ss_pred EeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 009597 407 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 444 (531)
Q Consensus 407 ~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~ 444 (531)
.+...+..+|..+++......+.+-+..|+|.+|++..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11123566899999998899999999999999999876
No 480
>PRK13684 Ycf48-like protein; Provisional
Probab=79.78 E-value=72 Score=32.16 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=61.3
Q ss_pred EEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEE-EcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcE
Q 009597 406 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY-STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 484 (531)
Q Consensus 406 ~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iw-d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 484 (531)
..+..+....+..+.+.|++.++++ +..|.+..- +- .+..... ... .....+..+.+.++++.+++| ..|.+
T Consensus 165 ~~~~~~~~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~-gg~tW~~---~~~-~~~~~l~~i~~~~~g~~~~vg-~~G~~ 237 (334)
T PRK13684 165 EALVEDAAGVVRNLRRSPDGKYVAV-SSRGNFYSTWEP-GQTAWTP---HQR-NSSRRLQSMGFQPDGNLWMLA-RGGQI 237 (334)
T ss_pred eeCcCCCcceEEEEEECCCCeEEEE-eCCceEEEEcCC-CCCeEEE---eeC-CCcccceeeeEcCCCCEEEEe-cCCEE
Confidence 3333334567888999998876655 445654432 21 1111111 111 123457778999999887766 45666
Q ss_pred EEEECCCCeEEEEeecc----CCcEEEEEEecCCCCEEEEEeCCCCEE
Q 009597 485 WFWDWKSCKVFRTLKCH----EGVCIGCEWHPLEQSKVATCGWDGLIK 528 (531)
Q Consensus 485 ~iwd~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~l~t~s~Dg~I~ 528 (531)
++=....+........+ ...+..+.+.| ++.. +.++.+|.|.
T Consensus 238 ~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~-~~~G~~G~v~ 283 (334)
T PRK13684 238 RFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEI-WAGGGNGTLL 283 (334)
T ss_pred EEccCCCCCccccccCCccccccceeeEEEcC-CCCE-EEEcCCCeEE
Confidence 54333444333322211 23467888888 5544 4455667553
No 481
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=79.32 E-value=1.3e+02 Score=34.77 Aligned_cols=167 Identities=15% Similarity=0.169 Sum_probs=90.5
Q ss_pred eEEEEECCCCceeEEEcccCC----CeeEEEEecCCCE-EEE-Ee-----------CCCCEEEEEcC-CCeEEEEeeCCC
Q 009597 351 KIVQWDMNTKEITQEYDQHLG----AVNTITFVDSNRR-FVT-SS-----------DDKSLRVWEFG-IPVVIKYISEPH 412 (531)
Q Consensus 351 ~I~iwd~~t~~~~~~~~~h~~----~I~~l~~sp~~~~-l~s-~s-----------~Dg~I~iwd~~-~~~~~~~~~~~~ 412 (531)
.|+++|..+++.+..+....+ .+..+.|+..... ++. +. .+|.++.|++- .+..+..+ |
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell---h 930 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL---H 930 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee---e
Confidence 488888888877665543222 4556666654333 333 22 23446666542 23333333 2
Q ss_pred CCCc--cEEEEeCCCCEEEEEEcCCeEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009597 413 MHSM--PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 490 (531)
Q Consensus 413 ~~~v--~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 490 (531)
...+ .-.++.|-..++++ +....+++||+.....+.+.. +.. ....|..+++. +..|++|+..-.+.++-++
T Consensus 931 ~T~~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e-~k~--~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 931 KTEIPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCE-LKF--IPNRISSIQTY--GARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred ccCCCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhh-hcc--CceEEEEEeec--ceEEEEeeccceEEEEEEe
Confidence 2222 23456676665554 567899999998765543322 221 23446666654 6688888876666665554
Q ss_pred C-CeEEEEeecc--CCcEEEEEEecCCCCEEEEEeCCCCEE
Q 009597 491 S-CKVFRTLKCH--EGVCIGCEWHPLEQSKVATCGWDGLIK 528 (531)
Q Consensus 491 ~-~~~~~~~~~h--~~~V~~v~~~p~~~~~l~t~s~Dg~I~ 528 (531)
. ...+..+... ...|+++.+.. ...+|.+..=|.|.
T Consensus 1005 ~~~n~l~~fadD~~pR~Vt~~~~lD--~~tvagaDrfGNi~ 1043 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPVPRHVTALELLD--YDTVAGADRFGNIA 1043 (1205)
T ss_pred cCCCeEEEEeCCCccceeeEEEEec--CCceeeccccCcEE
Confidence 3 3344444322 23456665553 34466666555554
No 482
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.80 E-value=35 Score=39.80 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=26.1
Q ss_pred CceEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 009597 285 KAVRDISFCNDGTKFLTASYDKNIKYWDTET 315 (531)
Q Consensus 285 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t 315 (531)
.....++|+|...+++.+...|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3567789999999999999999999997543
No 483
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=78.56 E-value=99 Score=33.10 Aligned_cols=228 Identities=14% Similarity=0.192 Sum_probs=104.2
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCCc---EEEEccC-CCcceEEEEccCCCCCcEEEEeeCCC--eEEEEECCCCceeEEE
Q 009597 293 CNDGTKFLTASYDKNIKYWDTETGQ---VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEY 366 (531)
Q Consensus 293 spdg~~l~s~s~Dg~I~vWd~~t~~---~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwd~~t~~~~~~~ 366 (531)
..++..++.+..+|.+....+.... .+..+.. .....++.+...+ +.++++|+.-| .+..|....-+.+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g--~d~lf~gs~~gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNG--GDYLFVGSEFGDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT----EEEEEESSS-EEEEEEESESEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCC--CEEEEEEEecCCcEEEEEeCCCcEEEEec
Confidence 3467788899999999988776533 2223322 2223333333322 34777776644 5555664444556666
Q ss_pred cccCCCeeEEEEecC----CC------EEEEEe---CCCCEEEEEcCCCeE---EEEeeCCCCCCccEEEEeC-CCCEEE
Q 009597 367 DQHLGAVNTITFVDS----NR------RFVTSS---DDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHP-NTNWLA 429 (531)
Q Consensus 367 ~~h~~~I~~l~~sp~----~~------~l~s~s---~Dg~I~iwd~~~~~~---~~~~~~~~~~~v~~v~~sp-~~~~l~ 429 (531)
. .-++|..+++.+. .. .|++++ .+|.+++..-.-+.. ......+.-..+..+.... +..+|+
T Consensus 297 ~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 297 P-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp -----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred c-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 5 4488999988642 22 566664 467888875433222 1111111223344444332 245666
Q ss_pred EEEcCCeEEEEEcC---CcceeceeeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeeccCC-cE
Q 009597 430 AQSLDNQILIYSTR---ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG-VC 505 (531)
Q Consensus 430 s~s~Dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~V 505 (531)
....+ .-+++.+. ....+.... ..+-.....-..+.... +..++=.... .|++.+...++....+....+ .|
T Consensus 376 ~S~~~-~T~vl~~~~~d~~e~~~e~~-~~~f~~~~~Tl~~~~~~-~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I 451 (504)
T PF10433_consen 376 LSFPN-ETRVLQISEGDDGEEVEEVE-EDGFDTDEPTLAAGNVG-DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSII 451 (504)
T ss_dssp EEESS-EEEEEEES----SSEEEEE----TS-SSS-EEEEEEET-TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---
T ss_pred EEcCC-ceEEEEEecccCCcchhhhh-hccCCCCCCCeEEEEcC-CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeE
Confidence 65544 44455553 122221111 10111111111122222 3444444433 488888777777776654333 44
Q ss_pred EEEEEecCCCCEEEEEeCCCCEEee
Q 009597 506 IGCEWHPLEQSKVATCGWDGLIKYW 530 (531)
Q Consensus 506 ~~v~~~p~~~~~l~t~s~Dg~I~iW 530 (531)
.+.+... ..++.+-.++.+.++
T Consensus 452 ~~a~~~~---~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 452 VAASIND---PQVLVALSGGELVYF 473 (504)
T ss_dssp SEEEESS---SEEEEEE-TTEEEEE
T ss_pred EEEEECC---CEEEEEEeCCcEEEE
Confidence 4444432 344444445555443
No 484
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.43 E-value=11 Score=24.45 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=28.2
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCeEEEEeeccCCcEEEEEE
Q 009597 470 PDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 510 (531)
Q Consensus 470 pdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h~~~V~~v~~ 510 (531)
|++++|+++. .++.|.++|..+++.+..+.....+ ..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence 5677666655 5789999999999988888753322 34444
No 485
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=77.81 E-value=1.3e+02 Score=34.11 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=46.5
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe----ec---------------cCCcEEEEEEecCCCCEEEEE
Q 009597 461 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL----KC---------------HEGVCIGCEWHPLEQSKVATC 521 (531)
Q Consensus 461 ~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~----~~---------------h~~~V~~v~~~p~~~~~l~t~ 521 (531)
..|.+++...-+.+|+....||+|.++|-.+.+.+... .. +-..+..++|+| ....++..
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEEE
Confidence 44666777777889999999999999998776554333 10 011334588999 66677777
Q ss_pred eCCCCEE
Q 009597 522 GWDGLIK 528 (531)
Q Consensus 522 s~Dg~I~ 528 (531)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 7788743
No 486
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.70 E-value=14 Score=33.34 Aligned_cols=104 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEEEcc
Q 009597 289 DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 368 (531)
Q Consensus 289 ~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~~~~ 368 (531)
+|+||.||. |+.+. +..|.|.+..+.. .+.................-..-..-.......-|-.........-..
T Consensus 9 ~l~WS~Dg~-laV~t-~~~v~IL~~~~P~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 83 (173)
T PF12657_consen 9 ALAWSEDGQ-LAVAT-GESVHILDPQTPN---SLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEI 83 (173)
T ss_pred CeeECCCCC-EEEEc-CCeEEEEeccCCc---ccccccccCCcccccccCCCccceEecCccccccCceecccccccccc
Q ss_pred cCCCeeEEEEecCC------CEEEEEeCCCCEEEE
Q 009597 369 HLGAVNTITFVDSN------RRFVTSSDDKSLRVW 397 (531)
Q Consensus 369 h~~~I~~l~~sp~~------~~l~s~s~Dg~I~iw 397 (531)
....|..++|+|.| -.|++.+.++.|.||
T Consensus 84 s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~ 118 (173)
T PF12657_consen 84 SSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLY 118 (173)
T ss_pred ccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEE
No 487
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=77.37 E-value=1.4e+02 Score=34.06 Aligned_cols=157 Identities=13% Similarity=0.188 Sum_probs=95.8
Q ss_pred CccCceEEEEEc---c----CCCEEEEEecCCeEEEEeCCC---------------CcEEEEcc----CCCcceEEEEcc
Q 009597 282 GHSKAVRDISFC---N----DGTKFLTASYDKNIKYWDTET---------------GQVIRTFS----TGKIPYVVKLNP 335 (531)
Q Consensus 282 gH~~~V~~l~fs---p----dg~~l~s~s~Dg~I~vWd~~t---------------~~~i~~~~----~~~~~~~~~~~~ 335 (531)
.-..+|..|+|. . ..++|+ .-....+.|+...- ..++..+. .+.....++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 123444 44456777777211 12334443 334445677777
Q ss_pred CCCCCcEEEEeeCCCeEEEEECCCC-----ceeEEEcccCCC----------eeEEEEecCCCEEEEEeCCCCEEEEEcC
Q 009597 336 DDDKQNILLAGMSDKKIVQWDMNTK-----EITQEYDQHLGA----------VNTITFVDSNRRFVTSSDDKSLRVWEFG 400 (531)
Q Consensus 336 ~~~~~~~l~sg~~dg~I~iwd~~t~-----~~~~~~~~h~~~----------I~~l~~sp~~~~l~s~s~Dg~I~iwd~~ 400 (531)
... ..|++....|...||++... ........+.+. -..|.|.++.+.|+.++.. .+.++|++
T Consensus 156 ~~~--~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~ 232 (765)
T PF10214_consen 156 WDQ--RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFE 232 (765)
T ss_pred Ccc--ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECC
Confidence 655 47999999999999999211 111111112222 3368898888888888754 58999999
Q ss_pred CCeEEE-EeeCCCCCCccEEEEeCC--CCEEEEEEcCCeEEEEEcCC
Q 009597 401 IPVVIK-YISEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRE 444 (531)
Q Consensus 401 ~~~~~~-~~~~~~~~~v~~v~~sp~--~~~l~s~s~Dg~I~iwd~~~ 444 (531)
...... .+.......|..+.-+|. +..|+. ....|...++..
T Consensus 233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred CCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 876644 333334567888888876 333333 336777777766
No 488
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.34 E-value=29 Score=36.51 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=53.6
Q ss_pred ceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCceeEE
Q 009597 286 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 365 (531)
Q Consensus 286 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~~~~ 365 (531)
.|..+..++.|..++-+|.+|.+..+=......-..+..++....+...+.+. .|++.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~---~~fts------------------- 162 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE---RFFTS------------------- 162 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc---eeecc-------------------
Confidence 57778888888888888888765544211111112222222222222222111 01111
Q ss_pred EcccCCCeeEEEEecCC---CEEEEEeCCCCEEEEEcCCCeEEEE
Q 009597 366 YDQHLGAVNTITFVDSN---RRFVTSSDDKSLRVWEFGIPVVIKY 407 (531)
Q Consensus 366 ~~~h~~~I~~l~~sp~~---~~l~s~s~Dg~I~iwd~~~~~~~~~ 407 (531)
. ..-.+...+|+|+. ..|+.-+.|..|||||+.....+..
T Consensus 163 -s-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 163 -S-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred -C-CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence 1 11234567788854 5677778899999999988766533
No 489
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=77.25 E-value=90 Score=32.51 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCCEEEEEeCCCCEEeeC
Q 009597 504 VCIGCEWHPLEQSKVATCGWDGLIKYWD 531 (531)
Q Consensus 504 ~V~~v~~~p~~~~~l~t~s~Dg~I~iWD 531 (531)
.|..++..+ ..+.|++...+|.|.+||
T Consensus 191 ~I~~v~~d~-~r~~ly~l~~~~~Iq~w~ 217 (422)
T PF08801_consen 191 KIVQVAVDP-SRRLLYTLTSDGSIQVWD 217 (422)
T ss_dssp -EEEEEEET-TTTEEEEEESSE-EEEEE
T ss_pred ceeeEEecC-CcCEEEEEeCCCcEEEEE
Confidence 488999998 668999999999999996
No 490
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=76.31 E-value=1.6e+02 Score=34.46 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=95.2
Q ss_pred CeEEEEeCCCCcEEEEccCCCcc--eEEEE---cc---CCCCCcEEEEeeC---------CCeEEEEECC-----CCce-
Q 009597 306 KNIKYWDTETGQVIRTFSTGKIP--YVVKL---NP---DDDKQNILLAGMS---------DKKIVQWDMN-----TKEI- 362 (531)
Q Consensus 306 g~I~vWd~~t~~~i~~~~~~~~~--~~~~~---~~---~~~~~~~l~sg~~---------dg~I~iwd~~-----t~~~- 362 (531)
..|.+.+.++++.+..+...... ..+.. .. ......++++|.. -|.++|||+- -+++
T Consensus 1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence 34556566666665554433222 22221 11 1122356777743 4899999972 2222
Q ss_pred ----eEEE--cccCCCeeEEEEecCCCEEEEEeCCCCEEEEEc-CCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCC
Q 009597 363 ----TQEY--DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF-GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 435 (531)
Q Consensus 363 ----~~~~--~~h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg 435 (531)
++.+ +...++|..++=. +| +|+++. .-.|.||++ +....+-.-. -.-++......--.++|+.|.--.
T Consensus 1084 t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~-GqKI~v~~l~r~~~ligVaF--iD~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQ-GQKIIVRKLDRDSELIGVAF--IDLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred ccceeeeeehhhcccceEEEEEe-cc-EEEEcc-CcEEEEEEeccCCcceeeEE--eccceeEEehhhhhhheehhhhhh
Confidence 2222 3355777776654 34 455544 345999998 4333222111 111222222222356666666556
Q ss_pred eEEEEEcCCcceeceeeeecCCccccceEEEEEcCCCC--EEEEEeCCCcEEEEECC--------CCeEEEEeeccCCcE
Q 009597 436 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWK--------SCKVFRTLKCHEGVC 505 (531)
Q Consensus 436 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~l~sgs~dg~I~iwd~~--------~~~~~~~~~~h~~~V 505 (531)
.|.+....... .++..+......-.+.++.|--+|. ++++++.+++|+++-.. ..++++.-..|-+.+
T Consensus 1159 sisfl~fqeep--~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radfhvg~~ 1236 (1366)
T KOG1896|consen 1159 SISFLGFQEEP--YRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADFHVGAH 1236 (1366)
T ss_pred ceEEEEEccCc--eEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeeeEeccc
Confidence 66655544321 1111122222223355566655554 57788999999998543 234555555555533
No 491
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=75.90 E-value=98 Score=31.67 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=19.6
Q ss_pred CeEEEEECCCCceeEEEcccC--CCeeEEEEecCCCEEEEEeC
Q 009597 350 KKIVQWDMNTKEITQEYDQHL--GAVNTITFVDSNRRFVTSSD 390 (531)
Q Consensus 350 g~I~iwd~~t~~~~~~~~~h~--~~I~~l~~sp~~~~l~s~s~ 390 (531)
..|.+||..+.+-...-.... ..-.++... ++++++.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 358889987765332111111 111233333 5667777764
No 492
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=74.92 E-value=97 Score=31.14 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=20.1
Q ss_pred CeEEEEECCCCceeE--EEcccCCCeeEEEEecCCCEEEEEeCC
Q 009597 350 KKIVQWDMNTKEITQ--EYDQHLGAVNTITFVDSNRRFVTSSDD 391 (531)
Q Consensus 350 g~I~iwd~~t~~~~~--~~~~h~~~I~~l~~sp~~~~l~s~s~D 391 (531)
..|.+||..+.+-.. .+......-.+++ .-++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 468889987654322 2211001112222 3367777777753
No 493
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=74.65 E-value=91 Score=30.68 Aligned_cols=159 Identities=16% Similarity=0.278 Sum_probs=84.7
Q ss_pred CeEEEEECCCCceeEEEccc------CCCeeEEEEecCC-----CE-EEEEeCCCCEEEEEcCCCeEEEEeeCCCCC---
Q 009597 350 KKIVQWDMNTKEITQEYDQH------LGAVNTITFVDSN-----RR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMH--- 414 (531)
Q Consensus 350 g~I~iwd~~t~~~~~~~~~h------~~~I~~l~~sp~~-----~~-l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~--- 414 (531)
-+|.+||+.+++.++.+... ...++.+.+.... .+ +++=+..+-|.|+|+.+++..+.... +..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~p 112 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPDP 112 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS-
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC-Ccceec
Confidence 37888999999988877543 3467788887632 23 33333445799999999877655432 111
Q ss_pred ----------------CccEEEEeC---CCCEEEEEEcCCeEEEEEcCCc-----cee------ceeeeecCCccccceE
Q 009597 415 ----------------SMPSISLHP---NTNWLAAQSLDNQILIYSTRER-----FQL------NKKKRFAGHIVAGYAC 464 (531)
Q Consensus 415 ----------------~v~~v~~sp---~~~~l~s~s~Dg~I~iwd~~~~-----~~~------~~~~~~~~~~~~~~v~ 464 (531)
.+..++.+| ++++|.-+...+. .+|.+.+. ... ..++.+ |.. .+...
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k-~~~s~ 189 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDK-GSQSD 189 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----SEC
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-ccc-CCCCc
Confidence 133444444 4455555443331 22322211 000 001111 110 12234
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEee-cc--CCcEEEEEEec
Q 009597 465 QVNFSPDGRFVMSGDGEGKCWFWDWKSC---KVFRTLK-CH--EGVCIGCEWHP 512 (531)
Q Consensus 465 ~l~~spdg~~l~sgs~dg~I~iwd~~~~---~~~~~~~-~h--~~~V~~v~~~p 512 (531)
.++++++|.++++--..+.|..|+.... +.+..+. .. -..+.++.+.+
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~ 243 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP 243 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc
Confidence 4788999998888889999999998751 1122222 11 23567777776
No 494
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=74.49 E-value=55 Score=28.10 Aligned_cols=113 Identities=10% Similarity=0.105 Sum_probs=62.3
Q ss_pred EEecCCCEEEEEeCCCCEEEEEcCCC--------eEEEEeeCCCCCCccEEEEeC-----CCCEEEEEEcCCeEEEEEcC
Q 009597 377 TFVDSNRRFVTSSDDKSLRVWEFGIP--------VVIKYISEPHMHSMPSISLHP-----NTNWLAAQSLDNQILIYSTR 443 (531)
Q Consensus 377 ~~sp~~~~l~s~s~Dg~I~iwd~~~~--------~~~~~~~~~~~~~v~~v~~sp-----~~~~l~s~s~Dg~I~iwd~~ 443 (531)
.|......|++++.-|+|.|++.... ..+..+. -...|++++-.+ ....|+. +....|..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~Lli-Gt~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLI-GTQTSLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEE-eccceEEEEEcc
Confidence 45445556778888888888876532 1223332 344566665443 2344555 556789999998
Q ss_pred CcceeceeeeecCCccccceEEEEE---cCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009597 444 ERFQLNKKKRFAGHIVAGYACQVNF---SPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 498 (531)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~v~~l~~---spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 498 (531)
....+..... ...+.++.+ .....-|+..+.+..|.-||..-.+.+.+.
T Consensus 82 ~N~d~Fyke~------~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKEV------PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhhC------ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 7654422211 122444444 222233444445667877887666655544
No 495
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.34 E-value=1.1e+02 Score=31.63 Aligned_cols=151 Identities=11% Similarity=0.083 Sum_probs=81.2
Q ss_pred eeEEEEecCCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEEEcCCcceec--e
Q 009597 373 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN--K 450 (531)
Q Consensus 373 I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~--~ 450 (531)
...+..++++.+++.+..-..++-||-.... ...+..+....+..+.+.+++.+++++ ..|.+..- ...+.... .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~-W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY-WQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc-eEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccc
Confidence 4445566777666665543333334433221 122333456678999999998877665 56665443 22221100 1
Q ss_pred eeeecCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee---ccCCcEEEEEEecCCCCEEEEEeCCCCE
Q 009597 451 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQSKVATCGWDGLI 527 (531)
Q Consensus 451 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~l~t~s~Dg~I 527 (531)
+...........+..+.|.+++..+++| ..|.+.... ..++...... .-....+.+.|.+ ++. ....|.+|.|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~-g~~~G~~G~i 393 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKK-GFVLGNDGVL 393 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCc-eEEEeCCcEE
Confidence 1111111112336778899888776655 567666553 4444444333 2234678898876 444 4445678887
Q ss_pred Eee
Q 009597 528 KYW 530 (531)
Q Consensus 528 ~iW 530 (531)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 496
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=74.04 E-value=1.3e+02 Score=32.27 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=98.7
Q ss_pred CceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCC--CcceEEEEccCCCCCcEEEEeeCCCeEEEEECCCCce
Q 009597 285 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 362 (531)
Q Consensus 285 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd~~t~~~ 362 (531)
+.|.++-...+|. |.+++.+|.+++-+-+ -.....+... .....+...+.... ..+-...+.|.+.+-+-.++..
T Consensus 290 S~vnsL~~D~dGs-LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~-~~v~~~ns~g~L~van~stG~~ 366 (671)
T COG3292 290 STVNSLWLDTDGS-LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLS-WGVRQLNSIGELMVANGSTGEL 366 (671)
T ss_pred ccccceeeccCCC-EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcc-cceeeccccceEEEecCCCCcE
Confidence 3567777777776 7888888776665432 1111112111 11111111110000 1122222233444444555555
Q ss_pred eEEEcc-cCCCeeEEEEecCCCEEEEEeCCCCEEEEEcCC-CeEEEEeeCCCCCCccEEEEeCCCCEEEEEEcCCeEEEE
Q 009597 363 TQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 440 (531)
Q Consensus 363 ~~~~~~-h~~~I~~l~~sp~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s~Dg~I~iw 440 (531)
+..... ....|+.+++... ..+-.++..+-+..|+.++ .-............|..+--.|+++ |..|+.+|.++.=
T Consensus 367 v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~~ 444 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKRD 444 (671)
T ss_pred EEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEecC
Confidence 544322 2245666666664 4455666554466677766 3334444444566788888888888 7888888866542
Q ss_pred EcCCcceeceeeeecCC-ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009597 441 STRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 491 (531)
Q Consensus 441 d~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 491 (531)
........... +..| ....++..+.+.|+|++-+.. .+| |..|+-+.
T Consensus 445 -pe~~~v~n~ln-~~~~~l~~s~~~~lg~~~~g~Lw~a~-g~g-va~~~sq~ 492 (671)
T COG3292 445 -PESGRVLNLLN-PGSHGLDGSRVEQLGLGPDGRLWLAA-GSG-VAAWESQR 492 (671)
T ss_pred -ccccchhcccc-cccCcCCcchhhhhccCCCCceEEEe-cce-eeeecccc
Confidence 22221111111 1111 123446668888998764333 232 56776554
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.74 E-value=90 Score=34.50 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=44.6
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCCCCcEEEEeeCCCeEEEEE
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 356 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwd 356 (531)
..-+++|.-+|.|+.+++++.||+|++|+..............+...+.|.. +-+++..+|..+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tn-----hgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTN-----HGLVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeec-----cceEEEeccchhheee
Confidence 3457788888999999999999999999986544322222222333233322 2277777787777775
No 498
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=72.83 E-value=22 Score=34.15 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=45.9
Q ss_pred CEEEEEecCCeEEEEeCCCCcEEEEccCCCcceEEEEccCCC-CCcEEEEeeCCCeEEEE
Q 009597 297 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD-KQNILLAGMSDKKIVQW 355 (531)
Q Consensus 297 ~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~-~~~~l~sg~~dg~I~iw 355 (531)
..|+.|..+|.|.|.|.+....+..+.....+..+...-.-+ -...+++++.||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 468999999999999999988888888777766555544332 44678899999998764
No 499
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=72.51 E-value=1.2e+02 Score=31.06 Aligned_cols=166 Identities=12% Similarity=0.180 Sum_probs=89.3
Q ss_pred EEEEecCCeEEEEeCCCCcEEEEccCCC---cceEEEEccCCCCC-cEEEEeeCCCeEEEEECCCCc----eeEEE----
Q 009597 299 FLTASYDKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQ-NILLAGMSDKKIVQWDMNTKE----ITQEY---- 366 (531)
Q Consensus 299 l~s~s~Dg~I~vWd~~t~~~i~~~~~~~---~~~~~~~~~~~~~~-~~l~sg~~dg~I~iwd~~t~~----~~~~~---- 366 (531)
+.-+.+-..+.+|...+++..+++..+. .+..+.|...+... .++-++..++.++++-....+ .+...
T Consensus 222 v~d~lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~k 301 (476)
T KOG0918|consen 222 VEDGLYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLK 301 (476)
T ss_pred hhccceeeeeEEEecCCccceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccc
Confidence 3334445579999999999998887654 34455554444332 233344455566666443221 11111
Q ss_pred ------cccCCCeeEEEEecCCCEEEEEe-CCCCEEEEEcCCCeEEEEeeCCCCCCccEEEEeCCCCEEEEEE--cCCeE
Q 009597 367 ------DQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQI 437 (531)
Q Consensus 367 ------~~h~~~I~~l~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~s--~Dg~I 437 (531)
..-.+-|+.+-.|-|.++|..+. --|-|+-||+..+...+.. |+..+-|+ ....|
T Consensus 302 v~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLt----------------gQi~lGG~i~~~s~v 365 (476)
T KOG0918|consen 302 VENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLT----------------GQIFLGGSIQKGSPV 365 (476)
T ss_pred cccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceE----------------EEEEECcEeecCCce
Confidence 12235678888888888876554 4788999999877544321 12222111 12233
Q ss_pred EEEEcCCcceeceeeeecCCccccceEEEEEcCCCCEEEEEeC
Q 009597 438 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 480 (531)
Q Consensus 438 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 480 (531)
++-.-............+|....+...-+.+|-||+.|.+..+
T Consensus 366 kvl~~e~~~~~~ea~~vKGrkl~GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 366 KVLEEEGLKKQPEALYVKGRKLRGGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred EEeccccccCCCccceecCccccCCceeEEeccCCcEEEEEch
Confidence 3332221001111122334444444555889999999988754
No 500
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=72.05 E-value=1.6e+02 Score=32.46 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=83.5
Q ss_pred cCceEEEEEccCCCEEEEEecCCeEEEEeCCCCc--EEEEccCCCcc---eEEEEccCC---CCCcEEEEeeC-C---Ce
Q 009597 284 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--VIRTFSTGKIP---YVVKLNPDD---DKQNILLAGMS-D---KK 351 (531)
Q Consensus 284 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~--~i~~~~~~~~~---~~~~~~~~~---~~~~~l~sg~~-d---g~ 351 (531)
...|.+|.|.++++.+++.-.+|.|.+||...+. .+..+...+.. +. .|..+. ....++++-+. . -+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 5679999999999999999999999999993322 22122222221 11 121111 12233333332 2 25
Q ss_pred EEEEEC-CCCceeEEEc---ccCCCeeEEEEec-CCCEEEEEeCCCCEEEEEcCCCeEEEEeeCCCC-----CCccEEEE
Q 009597 352 IVQWDM-NTKEITQEYD---QHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-----HSMPSISL 421 (531)
Q Consensus 352 I~iwd~-~t~~~~~~~~---~h~~~I~~l~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-----~~v~~v~~ 421 (531)
.+++.+ .....+.++. .+........|+- .|...-- .+++|.+|++-..+..+.+..++. ..+.++.-
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 667777 1222233332 2222222333332 4543333 677899999988776666654311 12223321
Q ss_pred eCCCCEEEEEEcCCeEEEEEcCCc
Q 009597 422 HPNTNWLAAQSLDNQILIYSTRER 445 (531)
Q Consensus 422 sp~~~~l~s~s~Dg~I~iwd~~~~ 445 (531)
|..+.++. +.++.|.+.|+.-.
T Consensus 286 -~s~nRvLL-s~~nkIyLld~~~~ 307 (670)
T PF10395_consen 286 -PSPNRVLL-SVNNKIYLLDLKFE 307 (670)
T ss_pred -CCCCeEEE-EcCCEEEEEeehhh
Confidence 23444443 45789999997644
Done!