BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009598
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 69/357 (19%)
Query: 177 YLSRGITSRPPNICIHEA-RVEADEVMFG---------ALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + A ++A + M A ++ G S + LIV
Sbjct: 75 YLTEEILKENPNVCEYMAPSLDARQAMLAMEVPRLGKEAAVKAIKEWGQPKSKITHLIV- 133
Query: 227 CSLFNP-VPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVV 285
CS P +P + LR +K + GC AG + LAK+L + N + +VV
Sbjct: 134 CSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAENNKGARVLVV 193
Query: 286 STENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT---- 338
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 194 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPD 253
Query: 339 HKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFV 398
+GA D H R+A L+ L D + NIT
Sbjct: 254 SEGAIDGHL---REA---------GLTFHLKGAVPDIVSKNIT----------------- 284
Query: 399 TLVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMT 454
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R
Sbjct: 285 --------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREV 334
Query: 455 LHRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
L +GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 335 LSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 391
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 150/367 (40%), Gaps = 62/367 (16%)
Query: 164 KRIASRASVGD-ETYLSRGITSRPPNICIHEA-RVEADEVMF---------GALDSLFEK 212
+RI R + + YL+ I PN+C ++A ++A E M A ++
Sbjct: 58 QRICERTQIKNRHMYLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKE 117
Query: 213 TGVEPSDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKN 272
G S + LI + +P + ++ L +K Y + GC AG + LAK+
Sbjct: 118 WGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKD 177
Query: 273 LLKANPNSYAVVVSTEN--ITQNWYSGNDRSMLLCNCLFRMGGAAVLL-SNKARDRSRSK 329
L + N ++ ++V +EN +T S D L+ LF G AA+++ S+ +
Sbjct: 178 LAENNKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPL 237
Query: 330 YELVHLVRTHKGADDKHFNCVRQAEDDQGIVG-----VSLSRDLMAVAGDALKTNITTLG 384
+E+V + D+ + G +G V L+ L D + NI
Sbjct: 238 FEIV--------STDQQL-----VPNSHGAIGGLLREVGLTFYLNKSVPDIISQNIND-- 282
Query: 385 PLVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLR 444
+ KA I D+ F + H GGRA+LD++++ + L+
Sbjct: 283 -------------------ALSKAFDPLGISDYNSIF--WIAHPGGRAILDQVEEKVNLK 321
Query: 445 DWHMEPSRMTLHRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCN 497
M+ +R L +GN SS+ +++ + K G G+ + W + FG G
Sbjct: 322 PEKMKATRDVLSNYGNMSSACVFFIMDLMRKKSLEAGLKTTGEGLDWGVLFGFGPGLTIE 381
Query: 498 SAVWRAL 504
+ V R++
Sbjct: 382 TVVLRSM 388
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 144/356 (40%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + GC AG + LAK+L + N + +VV
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 251 EGAIDGHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 280
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L
Sbjct: 281 -------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 115/296 (38%), Gaps = 73/296 (24%)
Query: 218 SDVGILI-VNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKA 276
+D+ ++I V+C+ F +PSL++ ++N + + +GC+AG +I A + A
Sbjct: 104 TDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTA 162
Query: 277 NPNSYAVVVSTENITQNWYSGNDRSM--LLCNCLFRMGGAAVLLSNKARDRSRSKYELVH 334
P + A++V+ E Y D + LLCN LF G AA ++ +
Sbjct: 163 YPEANALIVACE-FCSLCYQPTDLGVGSLLCNGLFGDGIAAAVVRGR------------- 208
Query: 335 LVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWI--- 391
G GV L R N + L P WI
Sbjct: 209 -----------------------GGTGVRLER------------NGSYLIPKTEDWIMYD 233
Query: 392 ---EQFRFFVTLVRRKMFKAKVKPYIPDFK-LAFEH---------FCIHSGGRAVLDEIQ 438
F F + K A ++P P K LA EH + +H+GG +LD++
Sbjct: 234 VKATGFHFLLD----KRVPATMEPLAPALKELAGEHGWDASDLDFYIVHAGGPRILDDLS 289
Query: 439 KNLQLRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGF 494
L++ SR TL +GN +S+ + L +G V G R FG G
Sbjct: 290 TFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFDEGGVEEGARGLLAGFGPGI 345
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 36/298 (12%)
Query: 214 GVEPSDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNL 273
G +D+ L+V + VP + +V LR ++ L GC AG ++ LAK+L
Sbjct: 142 GRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDL 201
Query: 274 LKANPNSYAVVVSTENITQNWYSGNDRS---MLLCNCLFRMGGAAVLLSNKARDRSRSKY 330
+ + + +VV+ E +T +++G D LL LF G AAV++ A D R +
Sbjct: 202 AENSRGARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLF 260
Query: 331 ELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPW 390
E+V +T D N G++G R + + GD ++
Sbjct: 261 EIVSAAQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVE------------- 303
Query: 391 IEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEP 450
R + + + + F + +H G ++D++ L L +
Sbjct: 304 ----RCLLDMFGPLLGGDGGGGWNDLF------WAVHPGSSTIMDQVDAALGLEPGKLAA 353
Query: 451 SRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVW-----QIAFGSGFKCNSAVWRA 503
SR L +GN S +++ + L + + A W +AFG G ++ + A
Sbjct: 354 SRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHA 411
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 36/298 (12%)
Query: 214 GVEPSDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNL 273
G +D+ L+V + VP + +V LR ++ L GC AG ++ LAK+L
Sbjct: 112 GRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDL 171
Query: 274 LKANPNSYAVVVSTENITQNWYSGNDRS---MLLCNCLFRMGGAAVLLSNKARDRSRSKY 330
+ + + +VV+ E +T +++G D LL LF G AAV++ A D R +
Sbjct: 172 AENSRGARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLF 230
Query: 331 ELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPW 390
E+V +T D N G++G R + + GD ++
Sbjct: 231 EIVSAAQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVE------------- 273
Query: 391 IEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEP 450
R + + + + F + +H G ++D++ L L +
Sbjct: 274 ----RCLLDMFGPLLGGDGGGGWNDLF------WAVHPGSSTIMDQVDAALGLEPGKLAA 323
Query: 451 SRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVW-----QIAFGSGFKCNSAVWRA 503
SR L +GN S +++ + L + + A W +AFG G ++ + A
Sbjct: 324 SRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHA 381
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 143/356 (40%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 251 EGAIDGHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 280
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L
Sbjct: 281 -------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 132/331 (39%), Gaps = 58/331 (17%)
Query: 164 KRIASRASVGDE-TYLSRGITSRPPNIC--IHEARVEADEVMFG---------ALDSLFE 211
KRI R+++ YL+ I + P++C + ++A + M A + +
Sbjct: 79 KRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQ 138
Query: 212 KTGVEPSDVGILIVNCSLFNP-VPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELA 270
+ G S + LI CS P +P + L +K + GC AG + +A
Sbjct: 139 EWGQSKSGITHLIF-CSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMA 197
Query: 271 KNLLKANPNSYAVVVSTENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSR 327
K+L + N + +V+ +E + ++ + L+ LF G +A+++ ++ +
Sbjct: 198 KDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEK 257
Query: 328 SKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVG-----VSLSRDLMAVAGDALKTNITT 382
+ +E+V +T + +G +G V L+ L D + NI
Sbjct: 258 ACFEIVWTAQT-------------VVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIEN 304
Query: 383 LGPLVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQ 442
+E F F K+F + +H GGRA+LD ++ L
Sbjct: 305 C------MVEAFSQFKISDWNKLF-----------------WVVHPGGRAILDRVEAKLN 341
Query: 443 LRDWHMEPSRMTLHRFGNTSSSSLWYELAYT 473
L + P+R + +GN SS+ + + L T
Sbjct: 342 LDPTKLIPTRHVMSEYGNMSSACVHFILDQT 372
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 143/356 (40%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 251 EGAIDAHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 280
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L
Sbjct: 281 -------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 132/331 (39%), Gaps = 58/331 (17%)
Query: 164 KRIASRASVGDE-TYLSRGITSRPPNIC--IHEARVEADEVMFG---------ALDSLFE 211
KRI R+++ YL+ I + P++C + ++A + M A + +
Sbjct: 63 KRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQ 122
Query: 212 KTGVEPSDVGILIVNCSLFNP-VPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELA 270
+ G S + LI CS P +P + L +K + GC AG + +A
Sbjct: 123 EWGQSKSGITHLIF-CSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMA 181
Query: 271 KNLLKANPNSYAVVVSTENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSR 327
K+L + N + +V+ +E + ++ + L+ LF G +A+++ ++ +
Sbjct: 182 KDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEK 241
Query: 328 SKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVG-----VSLSRDLMAVAGDALKTNITT 382
+ +E+V +T + +G +G V L+ L D + NI
Sbjct: 242 ACFEIVWTAQT-------------VVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIEN 288
Query: 383 LGPLVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQ 442
+E F F K+F + +H GGRA+LD ++ L
Sbjct: 289 C------MVEAFSQFKISDWNKLF-----------------WVVHPGGRAILDRVEAKLN 325
Query: 443 LRDWHMEPSRMTLHRFGNTSSSSLWYELAYT 473
L + P+R + +GN SS+ + + L T
Sbjct: 326 LDPTKLIPTRHVMSEYGNMSSACVHFILDQT 356
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 143/356 (40%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 251 EGAIDGHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 280
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L
Sbjct: 281 -------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 143/356 (40%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 251 EGAIDGHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 280
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L
Sbjct: 281 -------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 143/356 (40%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 70 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 129
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 130 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 189
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 190 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 249
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 250 EGAIDGHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 279
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L
Sbjct: 280 -------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 330
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 331 SEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 386
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 140/352 (39%), Gaps = 59/352 (16%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRTHKGAD 343
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI---- 246
Query: 344 DKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVTLVRR 403
A D +G + V L + + +V +
Sbjct: 247 ---------APDSEGAIDVHLREAGLT--------------------FHLLKDVPGIVSK 277
Query: 404 KMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFG 459
+ KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L +G
Sbjct: 278 NITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYG 335
Query: 460 NTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
N SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 336 NMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 143/356 (40%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 251 EGAIDLHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 280
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L
Sbjct: 281 -------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 143/356 (40%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 251 EGAIDFHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 280
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L
Sbjct: 281 -------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 122/303 (40%), Gaps = 45/303 (14%)
Query: 214 GVEPSDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNL 273
G+ S + LI + +P +V L +K Y L G +AG + LAK+L
Sbjct: 123 GLPKSKITHLIFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDL 182
Query: 274 LKANPNSYAVVVSTENITQNWYSG---NDRSMLLCNCLFRMGGAAVLL-SNKARDRSRSK 329
+ N S ++V +E IT + G N L+ LF G AA+++ S R
Sbjct: 183 AENNKGSRVLIVCSE-ITAILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPI 241
Query: 330 YELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDL-MAVAGDALKTNITTLGPLVL 388
+E+V +T +K + +G + L RD+ + VA + L PL
Sbjct: 242 FEIVSTDQTILPDTEKAMKLHLR----EGGLTFQLHRDVPLMVAKNIENAAEKALSPL-- 295
Query: 389 PWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHM 448
I D+ F + +H GGRA+LD++++ L L++ +
Sbjct: 296 ------------------------GITDWNSVF--WMVHPGGRAILDQVERKLNLKEDKL 329
Query: 449 EPSRMTLHRFGNTSSSSLWY------ELAYTEGKGRVARG-DRVWQIAFGSGFKCNSAVW 501
SR L +GN S+ + + + + EGK G D FG G + V
Sbjct: 330 RASRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVL 389
Query: 502 RAL 504
R++
Sbjct: 390 RSV 392
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 142/356 (39%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 70 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 129
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 130 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 189
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 190 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 249
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 250 EGAIDGHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 279
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + GG A+LD++++ L L+ M +R L
Sbjct: 280 -------KALVEAFEPLGISDYNSIF--WIAQPGGPAILDQVEQKLALKPEKMNATREVL 330
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 331 SEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 386
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 142/356 (39%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 69 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 128
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 129 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 188
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ LF G AA+++ S+ + + +E+V +T
Sbjct: 189 SEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 248
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 249 EGAIDGHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 278
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L
Sbjct: 279 -------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 329
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+G SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 330 SEYGAMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 385
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 116/264 (43%), Gaps = 32/264 (12%)
Query: 233 VPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVSTENITQ 292
+P ++ +++ L D++ +L MGC AGL S+ A +L KA+P + +VV TE +
Sbjct: 130 IPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSL 189
Query: 293 NWYSGNDRSMLLCNCLFRMGGAAVLLSNKARDRSRSKYELVHLVRTHKGADDKHFNCVRQ 352
++ + + ++ + +F G AA ++ R YE+ + ++ + V
Sbjct: 190 HFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEV--MCSINRSFPNTENAMVWD 247
Query: 353 AEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVTLVRRKMFKAKVKP 412
E + +G+ S ++ +G IE F TL+ + +
Sbjct: 248 LEKEGWNLGLDASIPIVIGSG-----------------IEA--FVDTLLDKAKLQTSTAI 288
Query: 413 YIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWYELAY 472
D + F IH+GG+++L I+ +L + + + H +GN SS+S+ + + +
Sbjct: 289 SAKDCE-----FLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDH 343
Query: 473 TEGKGRVARGDRVWQI--AFGSGF 494
R ++ + I AFG G
Sbjct: 344 ----ARKSKSLPTYSISLAFGPGL 363
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 142/356 (39%), Gaps = 67/356 (18%)
Query: 177 YLSRGITSRPPNICIH-----EAR-----VEADEVMFGALDSLFEKTGVEPSDVGILIVN 226
YL+ I PN+C + +AR VE + A ++ G S + LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVC 130
Query: 227 CSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVS 286
+ +P + LR +K Y + G AG + LAK+L + N + +VV
Sbjct: 131 TTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVC 190
Query: 287 TENITQNWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRT----H 339
+E + +D + L+ L G AA+++ S+ + + +E+V +T
Sbjct: 191 SEVTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDS 250
Query: 340 KGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVT 399
+GA D H R+A L+ L+ + NIT
Sbjct: 251 EGAIDGHL---REA---------GLTFHLLKDVPGIVSKNIT------------------ 280
Query: 400 LVRRKMFKAKVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTL 455
KA V+ + P D+ F + H GG A+LD++++ L L+ M +R L
Sbjct: 281 -------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVL 331
Query: 456 HRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNSAVWRAL 504
+GN SS+ + + L K G G+ + W + FG G + V R++
Sbjct: 332 SEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSV 387
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 120/306 (39%), Gaps = 51/306 (16%)
Query: 214 GVEPSDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNL 273
G S + LIV C +P + L +K + +GC AG + LAK++
Sbjct: 114 GQPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDI 173
Query: 274 LKANPNSYAVVVSTENITQNWYSGNDRSML---LCNCLFRMGGAAVLL-SNKARDRSRSK 329
+ N + ++V +E +T + G + L + LF G AAV++ ++ R
Sbjct: 174 AENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERPI 232
Query: 330 YELVHLVRT----HKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGP 385
+ELV +T GA + H ++ LS L + NI T
Sbjct: 233 FELVSTAQTIVPESHGAIEGH------------LLESGLSFHLYKTVPTLISNNIKTC-- 278
Query: 386 LVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRD 445
+ A I D+ F + H GG A+LD++ + L
Sbjct: 279 -------------------LSDAFTPLNISDWNSLF--WIAHPGGPAILDQVTAKVGLEK 317
Query: 446 WHMEPSRMTLHRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNS 498
++ +R L +GN SS+++++ + K G+ G+ + W + FG G +
Sbjct: 318 EKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVET 377
Query: 499 AVWRAL 504
V R++
Sbjct: 378 VVLRSV 383
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 110/276 (39%), Gaps = 53/276 (19%)
Query: 233 VPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVSTENITQ 292
+P + N L ++ L GC AG + AK+L + N + +VV +E
Sbjct: 724 MPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVV 783
Query: 293 NWYSGNDRSM--LLCNCLFRMGGAAVLL-SNKARDRSRSKYELVHLVRTHKGADDKHFNC 349
+ ++ ++ L+ LF G AAV++ S+ R ++LV +T
Sbjct: 784 TFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTF---------- 833
Query: 350 VRQAEDDQGIVGVSLSRDLMAVAGDALKTNIT-TLGPLVLPWIEQFRFFVTLVRRKMFKA 408
+ A+AG+ + +T L P V TL+ + K
Sbjct: 834 --------------IPNSAGAIAGNLREVGLTFHLWPNV----------PTLISENVEKC 869
Query: 409 KVKPYIP----DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSS 464
+ + P D+ F + H GG A+LD ++ L L +E +R L +GN SS+
Sbjct: 870 LTQAFDPLGISDWNSLF--WIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSA 927
Query: 465 SLWYELAYTEGKGRVARGDRV-------WQIAFGSG 493
+ + L E + + +G+R W + FG G
Sbjct: 928 CVLFIL--DEMRKKSLKGERATTGEGLDWGVLFGFG 961
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 119/306 (38%), Gaps = 51/306 (16%)
Query: 214 GVEPSDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNL 273
G S + LIV C +P + L +K + +GC AG + LAK++
Sbjct: 114 GQPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDI 173
Query: 274 LKANPNSYAVVVSTENITQNWYSGNDRSML---LCNCLFRMGGAAVLL-SNKARDRSRSK 329
+ N + ++V +E +T + G + L + + G AAV++ ++ R
Sbjct: 174 AENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPI 232
Query: 330 YELVHLVRT----HKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGP 385
+ELV +T GA + H ++ LS L + NI T
Sbjct: 233 FELVSTAQTIVPESHGAIEGH------------LLESGLSFHLYKTVPTLISNNIKTC-- 278
Query: 386 LVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRD 445
+ A I D+ F + H GG A+LD++ + L
Sbjct: 279 -------------------LSDAFTPLNISDWNSLF--WIAHPGGPAILDQVTAKVGLEK 317
Query: 446 WHMEPSRMTLHRFGNTSSSSLWYELAYTEGK----GRVARGDRV-WQI--AFGSGFKCNS 498
++ +R L +GN SS+++++ + K G+ G+ + W + FG G +
Sbjct: 318 EKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVET 377
Query: 499 AVWRAL 504
V R++
Sbjct: 378 VVLRSV 383
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 109/278 (39%), Gaps = 59/278 (21%)
Query: 246 LRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVSTENITQNWYSGNDRSM--L 303
LR +++ + G AG + +AK+L + N + + + +E + + ++ + L
Sbjct: 168 LRPNVRRVMMYQQGXFAGATVLRVAKDLAENNAGARVLAICSEVTAVTFRAPSETHIDGL 227
Query: 304 LCNCLFRMGGAAVLLSNKARDR-SRSKYEL----VHLVRTHKGADDKHFNCVRQAEDDQG 358
+ + LF G AAV++ + R R YE+ ++ GA D H + G
Sbjct: 228 VGSALFGDGAAAVIVGSDPRPGIERPIYEMHWAGEMVLPESDGAIDGHLT-------EAG 280
Query: 359 IVGVSLSRDLMAVA----GDALKTNITTLGPLVLPWIEQFRFFVTLVRRKMFKAKVKPYI 414
+V L +D+ + G LK +G W E F
Sbjct: 281 LV-FHLLKDVPGLITKNIGGFLKDTKNLVG--ASSWNELF-------------------- 317
Query: 415 PDFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWY------ 468
+ +H GG A+LD+++ L+L + SR L +GN SS+S+ +
Sbjct: 318 ---------WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVR 368
Query: 469 ELAYTEGKGRVARGDRVWQ--IAFGSGFKCNSAVWRAL 504
E + K G W I FG G + + RAL
Sbjct: 369 ERSLESNKSTFGEGSE-WGFLIGFGPGLTVETLLLRAL 405
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 121/302 (40%), Gaps = 43/302 (14%)
Query: 203 FGALDSLFEKTGVEPSDVGILIV-NCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCS 261
F A E G+E +G+++V S + PS + I + ++ +++ C+
Sbjct: 56 FEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG-CPAFDVAA-ACA 113
Query: 262 AGLISIELAKNLLKANPNSYAVVVSTENITQNWYSGNDRSMLLCNCLFRMG-GAAVLLSN 320
++ +A +K+ YA+VV ++ + + DR ++ +F G GAAVL ++
Sbjct: 114 GFTYALSVADQYVKSGAVKYALVVGSDVLARTC-DPTDRGTII---IFGDGAGAAVLAAS 169
Query: 321 KARDRSRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNI 380
E ++ TH AD + + D+ V S L + K +
Sbjct: 170 ----------EEPGIISTHLHADGSYGELLTLPNADR--VNPENSIHLTMAGNEVFKVAV 217
Query: 381 TTLGPLVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKN 440
T L +V TL + ++++ +P H ++ K
Sbjct: 218 TELAHIVDE---------TLAANNLDRSQLDWLVP-----------HQANLRIISATAKK 257
Query: 441 LQLRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAV 500
L + M+ +TL R GNTS++S+ L GR+ G V AFG GF SA+
Sbjct: 258 LGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
Query: 501 WR 502
R
Sbjct: 315 VR 316
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%)
Query: 218 SDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKAN 277
+++G+L++ S P + IV L I + MGC+A + ++ A N ++A+
Sbjct: 133 AEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAH 192
Query: 278 PNSYAVVVSTENITQNWYSGNDRSMLLCNCLFRMGGAAVLL 318
P A+VV E + N +D + ++ + LF G AA+++
Sbjct: 193 PAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVI 233
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%)
Query: 218 SDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKAN 277
+++G+L++ S P + IV L I + MGC+A + ++ A N ++A+
Sbjct: 133 AEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAH 192
Query: 278 PNSYAVVVSTENITQNWYSGNDRSMLLCNCLFRMGGAAVLL 318
P A+VV E + N +D + ++ + LF G AA+++
Sbjct: 193 PAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVI 233
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 121/297 (40%), Gaps = 42/297 (14%)
Query: 210 FEKTGVEPSDV-GILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIE 268
G+ +D+ G+++ + F P + M+ + I ++L GC+ ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALG 130
Query: 269 LAKNLLKANPNSYAVVVSTENI--TQNWYSGNDRSMLLCNC-LFRMGGAAVLLSNKARDR 325
A ++++ + +VV TE + T + Y DR NC +F G AAV++
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG------ 177
Query: 326 SRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGP 385
+ + T G+D + + +RQ D ++ +++ + + GP
Sbjct: 178 ---ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQNP-----SGPRPFVRLEGP 224
Query: 386 LVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRD 445
V W F+ + RR M A V+P D F H + + + KNLQLR
Sbjct: 225 AVFRW-AAFKMG-DVGRRAMDAAGVRPDQIDV------FVPHQANSRINELLVKNLQLRP 276
Query: 446 WHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAVWR 502
+ + + GNTS++S+ +A G GD I +G+G + V R
Sbjct: 277 DAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 121/297 (40%), Gaps = 42/297 (14%)
Query: 210 FEKTGVEPSDV-GILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIE 268
G+ +D+ G+++ + F P + M+ + I ++L GC+ ++
Sbjct: 93 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALG 150
Query: 269 LAKNLLKANPNSYAVVVSTENI--TQNWYSGNDRSMLLCNC-LFRMGGAAVLLSNKARDR 325
A ++++ + +VV TE + T + Y DR NC +F G AAV++
Sbjct: 151 AAADMIRGGGAATMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG------ 197
Query: 326 SRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGP 385
+ + T G+D + + +RQ D ++ +++ + + GP
Sbjct: 198 ---ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQNP-----SGPRPFVRLEGP 244
Query: 386 LVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRD 445
V W F+ + RR M A V+P D F H + + + KNLQLR
Sbjct: 245 AVFRW-AAFKMG-DVGRRAMDAAGVRPDQIDV------FVPHQANSRINELLVKNLQLRP 296
Query: 446 WHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAVWR 502
+ + + GNTS++S+ +A G GD I +G+G + V R
Sbjct: 297 DAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 351
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 132/329 (40%), Gaps = 61/329 (18%)
Query: 164 KRIASRASVGDETY-LSRGITSRPPNICIHE----------ARVEADEVMFGALDSLFEK 212
+RI ++ + + L+ I + P+IC + A +E ++ A S ++
Sbjct: 70 QRICDKSGIKKRHFHLTDEILRKNPSICKFKEASLDPRQDIAVLEVPKLAKEAAISAIKQ 129
Query: 213 TGVEPSDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKN 272
G S + L+ + +P + LR +K L G AG + +AK+
Sbjct: 130 WGQPKSKITHLVFATTSGVDMPGADFQLAKLLGLRPTVKRVMLYQQGXYAGATVLRVAKD 189
Query: 273 LLKANPNSYAVVVSTENITQNWYSGNDRSM--LLCNCLFRMGGAAVLLSNKARDRSRSKY 330
L + N + +V +E + + ++ + L+ + LF G AA+++ + +
Sbjct: 190 LAENNKGARVLVACSEVTAVTFRAPSETHLDGLVGSALFGDGAAALIVGSDPVPQEEKPL 249
Query: 331 ELVH-----LVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGP 385
+H ++ GA + H +R+A G++ L +D+
Sbjct: 250 FEIHWAGEAVLPDSDGAINGH---LREA----GLI-FHLLKDVPG--------------- 286
Query: 386 LVLPWIEQFRFFVTLVRRKMFKAKVKP----YIPDFKLAFEHFCIHSGGRAVLDEIQKNL 441
L+ + + K +P + P + F + +H GG A+LD+I+ L
Sbjct: 287 --------------LISKNIDKVLAEPLEYVHFPSYNDMF--WAVHPGGPAILDQIEAKL 330
Query: 442 QLRDWHMEPSRMTLHRFGNTSSSSLWYEL 470
L M+ SR L +GN SS+S+ + L
Sbjct: 331 GLSTDKMQASRDVLASYGNMSSASVLFVL 359
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 119/297 (40%), Gaps = 42/297 (14%)
Query: 210 FEKTGVEPSDV-GILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIE 268
G+ +D+ G+++ + F P + M+ + I ++L GC+ ++
Sbjct: 94 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALG 151
Query: 269 LAKNLLKANPNSYAVVVSTENI--TQNWYSGNDRSMLLCNC-LFRMGGAAVLLSNKARDR 325
A ++++ + +VV TE + T + Y NC +F G AAV++
Sbjct: 152 AAADMIRGGGAATMLVVGTEKLSPTIDMYDAG-------NCFIFADGAAAVVVG------ 198
Query: 326 SRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGP 385
+ + T G+D + + +RQ D ++ +++ + + GP
Sbjct: 199 ---ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQNP-----SGPRPFVRLEGP 245
Query: 386 LVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRD 445
V W F+ + RR M A V+P D F H + + + KNLQLR
Sbjct: 246 AVFRW-AAFKMG-DVGRRAMDAAGVRPDQIDV------FVPHQANSRINELLVKNLQLRP 297
Query: 446 WHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAVWR 502
+ + + GNTS++S+ +A G GD I +G+G + V R
Sbjct: 298 DAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 119/297 (40%), Gaps = 42/297 (14%)
Query: 210 FEKTGVEPSDV-GILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIE 268
G+ +D+ G+++ + F P + M+ + I ++L GC+ ++
Sbjct: 94 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALG 151
Query: 269 LAKNLLKANPNSYAVVVSTENI--TQNWYSGNDRSMLLCNC-LFRMGGAAVLLSNKARDR 325
A ++++ + +VV TE + T + Y NC +F G AAV++
Sbjct: 152 AAADMIRGGGAATMLVVGTEKLSPTIDMYDAG-------NCFIFADGAAAVVVG------ 198
Query: 326 SRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGP 385
+ + T G+D + + +RQ D ++ +++ + + GP
Sbjct: 199 ---ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQNP-----SGPRPFVRLEGP 245
Query: 386 LVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRD 445
V W F+ + RR M A V+P D F H + + + KNLQLR
Sbjct: 246 AVFRW-AAFKMG-DVGRRAMDAAGVRPDQIDV------FVPHQANSRINELLVKNLQLRP 297
Query: 446 WHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAVWR 502
+ + + GNTS++S+ +A G GD I +G+G + V R
Sbjct: 298 DAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 121/303 (39%), Gaps = 45/303 (14%)
Query: 203 FGALDSLFEKTGVEPSDVGILIV-NCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCS 261
F A E G+E +G+++V S + PS + I + ++ +++
Sbjct: 79 FEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG-CPAFDVAA--AX 135
Query: 262 AGLI-SIELAKNLLKANPNSYAVVVSTENITQNWYSGNDRSMLLCNCLFRMG-GAAVLLS 319
AG ++ +A +K+ YA+VV ++ + + DR ++ +F G GAAVL +
Sbjct: 136 AGFTYALSVADQYVKSGAVKYALVVGSDVLARTC-DPTDRGTII---IFGDGAGAAVLAA 191
Query: 320 NKARDRSRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTN 379
+ E ++ TH AD + + D+ V S L + K
Sbjct: 192 S----------EEPGIISTHLHADGSYGELLTLPNADR--VNPENSIHLTMAGNEVFKVA 239
Query: 380 ITTLGPLVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQK 439
+T L +V TL + ++++ +P H ++ K
Sbjct: 240 VTELAHIVDE---------TLAANNLDRSQLDWLVP-----------HQANLRIISATAK 279
Query: 440 NLQLRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSA 499
L + M+ +TL R GNTS++S+ L GR+ G V AFG GF SA
Sbjct: 280 KLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSA 336
Query: 500 VWR 502
+ R
Sbjct: 337 LVR 339
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 121/303 (39%), Gaps = 45/303 (14%)
Query: 203 FGALDSLFEKTGVEPSDVGILIV-NCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCS 261
F A E G+E +G+++V S + PS + I + ++ +++
Sbjct: 56 FEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG-CPAFDVAA--AX 112
Query: 262 AGLI-SIELAKNLLKANPNSYAVVVSTENITQNWYSGNDRSMLLCNCLFRMG-GAAVLLS 319
AG ++ +A +K+ YA+VV ++ + + DR ++ +F G GAAVL +
Sbjct: 113 AGFTYALSVADQYVKSGAVKYALVVGSDVLARTC-DPTDRGTII---IFGDGAGAAVLAA 168
Query: 320 NKARDRSRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTN 379
+ E ++ TH AD + + D+ V S L + K
Sbjct: 169 S----------EEPGIISTHLHADGSYGELLTLPNADR--VNPENSIHLTMAGNEVFKVA 216
Query: 380 ITTLGPLVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQK 439
+T L +V TL + ++++ +P H ++ K
Sbjct: 217 VTELAHIVDE---------TLAANNLDRSQLDWLVP-----------HQANLRIISATAK 256
Query: 440 NLQLRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSA 499
L + M+ +TL R GNTS++S+ L GR+ G V AFG GF SA
Sbjct: 257 KLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSA 313
Query: 500 VWR 502
+ R
Sbjct: 314 LVR 316
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 392 EQFRFFVTLVRRKMFKAKVKPYIP--DFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHME 449
E F+F V ++ +A K + D +L F H ++D ++ L L W E
Sbjct: 213 EVFKFAVRVMNTATLEAIEKAGLTPEDIRL----FVPHQANLRIIDAARERLGL-PW--E 265
Query: 450 PSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAV 500
+ + R+GNTS++S+ L GR+ GD V ++FG+G +AV
Sbjct: 266 RVAVNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGAGLTWAAAV 316
>pdb|2QNY|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QNY|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QO0|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
pdb|2QO0|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
Length = 335
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 121/297 (40%), Gaps = 42/297 (14%)
Query: 210 FEKTGVEPSDV-GILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIE 268
G+ +D+ G+++ + F P + M+ + I ++L GC+ ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALG 130
Query: 269 LAKNLLKANPNSYAVVVSTENI--TQNWYSGNDRSMLLCNC-LFRMGGAAVLLSNKARDR 325
A ++++ + +VV TE + T + Y DR NC +F G AAV++
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG------ 177
Query: 326 SRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGP 385
+ + T G+D + + +RQ D ++ +++ + + GP
Sbjct: 178 ---ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQNP-----SGPRPFVRLEGP 224
Query: 386 LVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRD 445
V W F+ + RR M A V+P D F H + + + KNLQLR
Sbjct: 225 AVFRW-AAFKMG-DVGRRAMDAAGVRPDQIDV------FVPHQFNSRINELLVKNLQLRP 276
Query: 446 WHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAVWR 502
+ + + GNTS++S+ +A G GD I +G+G + V R
Sbjct: 277 DAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 427 HSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWYEL----AYTEGKGRVARG 482
H GGRA+LD+++ L+LR +R L +GN S+S+ Y L + KG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 483 DRV-WQI--AFGSGFKCNSAVWRAL 504
+ + W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 427 HSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWYEL----AYTEGKGRVARG 482
H GGRA+LD+++ L+LR +R L +GN S+S+ Y L + KG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 483 DRV-WQI--AFGSGFKCNSAVWRAL 504
+ + W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 424 FCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGD 483
F +H R +LD ++K +++ + H P M GNT SS+L L G +ARG
Sbjct: 289 FVLHQANRFMLDALRKKMKIPE-HKFPVLM--EHCGNTVSSTLPLALETMRANGTLARGM 345
Query: 484 RVWQIAFGSGF 494
R+ + FG G+
Sbjct: 346 RLMLLGFGVGY 356
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 119/302 (39%), Gaps = 43/302 (14%)
Query: 203 FGALDSLFEKTGVEPSDVGILIV-NCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCS 261
F A E G+E +G+++V S + PS + I + ++ +++ C+
Sbjct: 56 FEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKG-CPAFDVAAA-CA 113
Query: 262 AGLISIELAKNLLKANPNSYAVVVSTENITQNWYSGNDRSMLLCNCLFRMG-GAAVLLSN 320
++ +A +K+ YA+VV ++ + + DR ++ +F G GAAVL ++
Sbjct: 114 GFTYALSVADQYVKSGAVKYALVVGSDVLARTC-DPTDRGTII---IFGDGAGAAVLAAS 169
Query: 321 KARDRSRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNI 380
E ++ TH AD + + D+ V S L + K +
Sbjct: 170 ----------EEPGIISTHLHADGSYGELLTLPNADR--VNPENSIHLTXAGNEVFKVAV 217
Query: 381 TTLGPLVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKN 440
T L +V TL ++++ +P H ++ K
Sbjct: 218 TELAHIVDE---------TLAANNNDRSQLDWLVP-----------HQANLRIISATAKK 257
Query: 441 LQLRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAV 500
L ++ +TL R GNTS++S+ L GR+ G V AFG GF SA+
Sbjct: 258 LGXSXDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
Query: 501 WR 502
R
Sbjct: 315 VR 316
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 119/297 (40%), Gaps = 42/297 (14%)
Query: 210 FEKTGVEPSDV-GILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIE 268
G+ +D+ G+++ + F P + M+ + I ++L G ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLSAGAAGFGY-ALG 130
Query: 269 LAKNLLKANPNSYAVVVSTENI--TQNWYSGNDRSMLLCNC-LFRMGGAAVLLSNKARDR 325
A ++++ + +VV TE + T + Y DR NC +F G AAV++
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG------ 177
Query: 326 SRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGP 385
+ + T G+D + + +RQ D ++ +++ + + GP
Sbjct: 178 ---ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQNP-----SGPRPFVRLEGP 224
Query: 386 LVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRD 445
V W F+ + RR M A V+P D F H + + + KNLQLR
Sbjct: 225 AVFRW-AAFKMG-DVGRRAMDAAGVRPDQIDV------FVPHQANSRINELLVKNLQLRP 276
Query: 446 WHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAVWR 502
+ + + GNTS++S+ +A G GD I +G+G + V R
Sbjct: 277 DAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 136/330 (41%), Gaps = 63/330 (19%)
Query: 182 ITSRPPNICIHEARVEADEVMF----GALDSLFEKTGVEPSDVGILIVNCSLFNP---VP 234
IT+R I E R+ +E + A + + P ++ ++I+ + P P
Sbjct: 33 ITTRTG---IKERRIAKEETITYMATQAAKEALREANLSPEELDLIIL--ATLTPQKRFP 87
Query: 235 SLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVSTENITQ-- 292
S + ++ K + + +++ CS + ++++A + +K+ +V+ E +++
Sbjct: 88 STACLVQAQLKAKG-VYAFDISA-ACSGFIYALDIADSFIKSGKAKNVLVIGAEKLSEAV 145
Query: 293 NWYSGNDRSMLLCNCLFRMGGAAVLLSNKARDRSRSKYELVHLVRTHKGADDKHFNCVRQ 352
+W DRS + LF G AV+++ RS K +++ +G+ ++ +
Sbjct: 146 DW---EDRSTCV---LFGDGAGAVVVT-----RSEDKSDILATRMYAEGSLEELLHA--- 191
Query: 353 AEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVTLVRRKMFKAKVKP 412
D+ G + + R+L VA R + R + KA VKP
Sbjct: 192 --DNCGYIRMK-GRELFKVA---------------------VRSMEEVCREVLEKAGVKP 227
Query: 413 YIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWYELAY 472
+ L H +++ + + L + E + + ++GNTS++S+ L
Sbjct: 228 --EEVSLVIPH----QANVRIINALAEKLNIPK---EKVFVNIQKYGNTSAASIPIALHE 278
Query: 473 TEGKGRVARGDRVWQIAFGSGFKCNSAVWR 502
+G+V RGD + A G G + + R
Sbjct: 279 AIKEGKVKRGDLILMTAMGGGLTWGAVLLR 308
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 136/342 (39%), Gaps = 45/342 (13%)
Query: 164 KRIASRA-SVGDETYLSR-GITSRPPNICIHEARVEADEVMFGALDSLFEKTGVEPSDVG 221
KR+A + DE ++R GI +R E V ++ F A E ++P +
Sbjct: 33 KRLAEQGIETSDEWIVARTGIHAR----YFAEPDVTTSDLAFIASQRAIEAADIDPQSID 88
Query: 222 ILIVNCSLFNPV-PSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNS 280
++IV S + V PS + ++ N +R+ +++ + S ++ A + +++ +
Sbjct: 89 LIIVATSTPDFVFPSTACLLQNKLGIRNHGAAFDVQAV-XSGFAYAVATADSFIRSGQHR 147
Query: 281 YAVVVSTENITQNWYSGNDRSMLLCNCLFRMGGAAVLLSNKARDRSRSKYELVHLVRTHK 340
A+V+ E ++ DR+ + LF G AV+L +A D +H
Sbjct: 148 TALVIGAETFSR-ILDFKDRTTCV---LFGDGAGAVIL--QASDEPGVLASALH------ 195
Query: 341 GADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVTL 400
AD H N + + G GV + + G A+ F+ V +
Sbjct: 196 -ADGSHSNILCTPGNVNG--GVVSGSAFLHMDGQAV-----------------FKLAVNV 235
Query: 401 VRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGN 460
+ + +A K + ++ + H ++ + L L M +T+ GN
Sbjct: 236 LEKVAVEALEKANLSAEQI--DWLIPHQANIRIMQSTCRKLGLPQERM---IVTVGEHGN 290
Query: 461 TSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAVWR 502
TS++S+ L GR+ RG V G GF ++V R
Sbjct: 291 TSAASIPLALDVAVRDGRIKRGQNVLIEGVGGGFTWGASVIR 332
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 49/319 (15%)
Query: 191 IHEARVEA-DEVM----FGALDSLFEKTGVEPSDVGILIV-NCSLFNPVPSLSSMIVNHY 244
I E R+ A DE + F A + E + P D+ ++IV S + PS + +
Sbjct: 46 IRERRIAAEDETVATMGFEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLL 105
Query: 245 KLRDDIKTYNLGGMGCSAGLI-SIELAKNLLKANPNSYAVVVSTENITQNWYSGNDRSML 303
+ DD +++L G + ++ +A ++A A+V+ ++ + DRS +
Sbjct: 106 NI-DDAISFDLAA--AXTGFVYALSVADQFIRAGKVKKALVIGSD-LNSRKLDETDRSTV 161
Query: 304 LCNCLFRMGGAAVLLSNKARDRSRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVS 363
+ LF G AV+L S+ E + H AD + + Q E G+
Sbjct: 162 V---LFGDGAGAVILE-------ASEQEGIISTHLHASADKNNALVLAQPER-----GIE 206
Query: 364 LSRDLMAVAGDALKTNITTLGPLVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEH 423
S + + K + L +V TL+ + K + +P
Sbjct: 207 KSGYIEMQGNETFKLAVRELSNVVEE---------TLLANNLDKKDLDWLVP-------- 249
Query: 424 FCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGD 483
H ++ K L++ M +TL ++ N S++++ L GR+ RG
Sbjct: 250 ---HQANLRIITATAKKLEM---DMSQVVVTLDKYANNSAATVPVALDEAIRDGRIQRGQ 303
Query: 484 RVWQIAFGSGFKCNSAVWR 502
+ AFG G+ SA+ R
Sbjct: 304 LLLLEAFGGGWTWGSALVR 322
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 120/303 (39%), Gaps = 45/303 (14%)
Query: 203 FGALDSLFEKTGVEPSDVGILIV-NCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCS 261
F A E G+E +G+++V S + PS + I + ++ +++
Sbjct: 56 FEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKG-CPAFDV--AAAX 112
Query: 262 AGLI-SIELAKNLLKANPNSYAVVVSTENITQNWYSGNDRSMLLCNCLFRMG-GAAVLLS 319
AG ++ +A +K+ YA+VV ++ + + DR ++ +F G GAAVL +
Sbjct: 113 AGFTYALSVADQYVKSGAVKYALVVGSDVLARTC-DPTDRGTII---IFGDGAGAAVLAA 168
Query: 320 NKARDRSRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTN 379
+ E ++ TH AD + + D+ V S L + K
Sbjct: 169 S----------EEPGIISTHLHADGSYGELLTLPNADR--VNPENSIHLTXAGNEVFKVA 216
Query: 380 ITTLGPLVLPWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQK 439
+T L +V TL + ++++ +P H ++ K
Sbjct: 217 VTELAHIVDE---------TLAANNLDRSQLDWLVP-----------HQANLRIISATAK 256
Query: 440 NLQLRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSA 499
L ++ +TL R GNTS++S+ L GR+ G V AFG GF SA
Sbjct: 257 KLGXSXDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSA 313
Query: 500 VWR 502
+ R
Sbjct: 314 LVR 316
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 210 FEKTGVEPSDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIEL 269
+ G++ +DV LI + S +P L + N LR D C AG S+ L
Sbjct: 149 LQIAGLDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLAL 208
Query: 270 AKNLLKANPNSYAVVVSTENITQNWYSGNDR-SMLLCNCLFRMGGAAVLLSNKARDRS 326
A +L+ A+P+ +VV +E ++ + +D L+ LF A +++ + R S
Sbjct: 209 AADLVAADPDRVVLVVISEALSTTYQPADDTLESLIVRLLFADTAVAAVVTGRPRPES 266
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 115/296 (38%), Gaps = 60/296 (20%)
Query: 214 GVEPSDVGILIVNCSLFN-PVPSLSSMIVNHYKLRDDIKTYNLGGM----GCSAGLISIE 268
G++P D+ ++IV + + P P++++M L++ + T + M CS + S+
Sbjct: 67 GIQPEDIDMIIVATATGDMPFPTVANM------LQERLGTGKVASMDQLAACSGFMYSMI 120
Query: 269 LAKNLLKANPNSYAVVVSTENITQNWYSGNDRSMLLCNCLFRMGGAAVLLSNKARDRSRS 328
AK +++ +VV + +++ DRS LF G AV++ + R
Sbjct: 121 TAKQYVQSGDYHNILVVGADKLSK-ITDLTDRS---TAVLFGDGAGAVIIGEVSEGRGII 176
Query: 329 KYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSRDLMAVAGDALKTNITTLGPLVL 388
YE+ G KH L +D G L +
Sbjct: 177 SYEM-----GSDGTGGKHL---------------YLDKDT---------------GKLKM 201
Query: 389 PWIEQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQLRDWHM 448
E F+F V ++ + K + + + F H +++ ++ L + M
Sbjct: 202 NGREVFKFAVRIMGDASTRVVEKANLTSDDI--DLFIPHQANIRIMESARERLGISKDKM 259
Query: 449 EPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSAVWRAL 504
S ++++GNTS++S+ + G++ D + + FG G W A+
Sbjct: 260 SVS---VNKYGNTSAASIPLSIDQELKNGKLKDDDTIVLVGFGGGL-----TWGAM 307
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 427 HSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWYEL----AYTEGKGRVARG 482
H G A++D I+ LQL + +R +GN S+++++ + + +GR G
Sbjct: 303 HPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTG 362
Query: 483 DRV-WQI--AFGSGFKCNSAVWRAL 504
D + W + FG G + V R++
Sbjct: 363 DGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 427 HSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWYEL----AYTEGKGRVARG 482
H G A++D I+ LQL + +R +GN S+++++ + + +GR G
Sbjct: 303 HPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTG 362
Query: 483 DRV-WQI--AFGSGFKCNSAVWRAL 504
D + W + FG G + V R++
Sbjct: 363 DGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 115/301 (38%), Gaps = 55/301 (18%)
Query: 218 SDVGI----LIVNCSLFNPV--PSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAK 271
+++GI L++N S+ PS +S++ + + D T+++ C A + +++A
Sbjct: 83 ANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFINGMDIAA 141
Query: 272 NLLKANPNSYAVVVSTENITQNWYSGNDR--SMLLCNCLFRMGGAAVLLSNKARDRSRSK 329
+L+ YA+VV E + +R S + FR AA+ L A ++
Sbjct: 142 RMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMAR 201
Query: 330 YELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSR-----DLMAVAGDALKTNITTLG 384
ELV +KG R A + + +L R L+ + G L
Sbjct: 202 SELVPDAPRYKGG------VTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAA 255
Query: 385 PLVLPW-IEQF-RFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQ 442
VL W +E+ +F + V R A VK + D F H
Sbjct: 256 KQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEH--------------- 300
Query: 443 LRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSA--V 500
GN +S+ L+ + GR+ +GDR+ + GSG C+ A V
Sbjct: 301 ----------------GNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVV 344
Query: 501 W 501
W
Sbjct: 345 W 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 115/301 (38%), Gaps = 55/301 (18%)
Query: 218 SDVGI----LIVNCSLFNPV--PSLSSMIVNHYKLRDDIKTYNLGGMGCSAGLISIELAK 271
+++GI L++N S+ PS +S++ + + D T+++ C A + +++A
Sbjct: 82 ANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFINGMDIAA 140
Query: 272 NLLKANPNSYAVVVSTENITQNWYSGNDR--SMLLCNCLFRMGGAAVLLSNKARDRSRSK 329
+L+ YA+VV E + +R S + FR AA+ L A ++
Sbjct: 141 RMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMAR 200
Query: 330 YELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSR-----DLMAVAGDALKTNITTLG 384
ELV +KG R A + + +L R L+ + G L
Sbjct: 201 SELVPDAPRYKGG------VTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAA 254
Query: 385 PLVLPW-IEQF-RFFVTLVRRKMFKAKVKPYIPDFKLAFEHFCIHSGGRAVLDEIQKNLQ 442
VL W +E+ +F + V R A VK + D F H
Sbjct: 255 KQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEH--------------- 299
Query: 443 LRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDRVWQIAFGSGFKCNSA--V 500
GN +S+ L+ + GR+ +GDR+ + GSG C+ A V
Sbjct: 300 ----------------GNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVV 343
Query: 501 W 501
W
Sbjct: 344 W 344
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 117/319 (36%), Gaps = 52/319 (16%)
Query: 196 VEADEVMFGALDSLFEKTGVEPSDVGILIVNCSLFNPV--PSLSSMIVNHYKLRDDIKTY 253
V+A + A G+ +G+L VN S+ PS +S++ + + D T+
Sbjct: 59 VQASDAATQAARKALIDAGIGIEKIGLL-VNTSVSRDYLEPSTASIVSGNLGVGDHCVTF 117
Query: 254 NLGGMGCSAGLISIELAKNLLKANPNSYAVVVSTENITQNWYSGNDR--SMLLCNCLFRM 311
++ C A + +++A +L+ YA+VV E + +R S + FR
Sbjct: 118 DVAN-ACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRN 176
Query: 312 GGAAVLLSNKARDRSRSKYELVHLVRTHKGADDKHFNCVRQAEDDQGIVGVSLSR----- 366
AA+ L A ++ ELV +KG R A + + +L R
Sbjct: 177 ELAALTLGCGAAAMVMARTELVPDAPRYKGG------VTRSATEWNKLCRGNLDRMVTDT 230
Query: 367 DLMAVAGDALKTNITTLGPLVLPWI--EQFRFFVTLVRRKMFKAKVKPYIPDFKLAFEHF 424
L+ + G L VL W E +F + V R A VK + D F
Sbjct: 231 RLLLIEGIKLAQKTFLAARQVLGWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIF 290
Query: 425 CIHSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGKGRVARGDR 484
H GN +S+ L+ + GR+ +GDR
Sbjct: 291 GEH-------------------------------GNIGPASVPIVLSKLKELGRLKKGDR 319
Query: 485 VWQIAFGSGFKCNSA--VW 501
+ + GSG C+ A VW
Sbjct: 320 IALLGIGSGLNCSMAEVVW 338
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 22/99 (22%)
Query: 197 EADEVMFGALDSLFEKTGVEPSDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLG 256
E DEV+ G + +TG+ + + +N + N VPS + VN
Sbjct: 50 EIDEVIIGNV----LQTGLGQNVARQIAINAGIPNSVPSYT---VNKL------------ 90
Query: 257 GMGCSAGLISIELAKNLLKANPNSYAVVVSTENITQNWY 295
C +GL S++LA + + N + TEN++Q Y
Sbjct: 91 ---CGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPY 126
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 206 LDSLFEKTGVEPSDVGILIVNCSLFNPVPSLSSMIVNHYKLRDDIKTYNLGGMG-CSAGL 264
+ +L + TG + + G +VNC+ +PSL + I+N + +Y L G C+ G+
Sbjct: 230 MSALLQATGAQEDEYGQFLVNCNSIQNLPSL-TFIINGVEFPLPPSSYILSNNGYCTVGV 288
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 424 FCIHSGGRAVLDEIQKNLQLRDWHMEPSRMTLHRFGNTSSSSLWYELAYTEGK--GRVAR 481
+ +H GG +L + + L HM S GN+SS++++ L K +A
Sbjct: 322 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAP 381
Query: 482 GDRVWQ----IAFGSGFKCNSAVWRALMDIPVGNWRG 514
G +V + AFG G + + M+ P G
Sbjct: 382 GGKVKEYVVGCAFGPGINVEMCMLKRRMNAPARTTTG 418
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 242 NHYKLRDDIKTYNLGGMGCSAGLISIELAKNLLKANPNSYAVVVSTENITQNWYSGNDRS 301
N+YK+ I+ Y+ G G L N YA +S N N G DR+
Sbjct: 80 NNYKI---IREYDSGRGGAK------------LYKNGKPYATTISAVNKAVNEILGVDRN 124
Query: 302 MLLCNCLFRMGGAAVLLSNKARDR 325
M L + + G A LS K ++
Sbjct: 125 MFLNSIYIKQGEIAKFLSLKPSEK 148
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 199 DEVMFGALDSLFEKTGVEPSDVGILIVNCSLFNPVPSLSS---MIVNHYKLRDDIKTYNL 255
D+++ L +L EKT + PS+VG ++V ++ P +S M + + + +
Sbjct: 56 DDLLAPVLRALIEKTNLNPSEVGDIVVG-TVLAPGSQRASECRMAAFYAGFPETVAVRTV 114
Query: 256 GGMGCSAGLISIELAKNLLKANPNSYAVVVSTENITQN---WYSGNDRSM----LLCNCL 308
CS+GL ++ +KA + E++T N W + ++ NCL
Sbjct: 115 NRQ-CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCL 173
Query: 309 FRMG 312
MG
Sbjct: 174 LPMG 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,559,670
Number of Sequences: 62578
Number of extensions: 560061
Number of successful extensions: 1501
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1414
Number of HSP's gapped (non-prelim): 92
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)