BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009600
(531 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2
Length = 895
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 243/476 (51%), Positives = 318/476 (66%), Gaps = 32/476 (6%)
Query: 57 TDSNNDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHD------ 110
++S+ D + ++ A V +EYV E+ ++ + F++IFE F D
Sbjct: 344 SESSGDREKDSTRSRGSDSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEK 403
Query: 111 AAGSEDIDKRDESAQNA-----ESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIA 165
E +DK + SA E K +D D+ D+EQ+ +P+ LS KK + R +A
Sbjct: 404 EKEPEKLDKLENSAAPKKKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVA 463
Query: 166 ELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQ 225
ELKQ+ +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KRK+LQGKRGIEK PF+
Sbjct: 464 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 523
Query: 226 LPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPK 285
LPDFI TGI+++R+A EKE+ K +K K RE+++PKMGK+DIDYQ LHDAFFK+QTKPK
Sbjct: 524 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 583
Query: 286 LTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDG-----APPPWLINMQRYGPPP 340
LT HGDLY+EGKEFE +L+E KPG LS +L+ +LGMP G PPPWLI MQRYGPPP
Sbjct: 584 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 643
Query: 341 SYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQE-QPNYEEEPV 399
SYP+LKIPGLN+PIP SFGYH GGWGKPPVDE G+PLYGDVFG + E Q EEE +
Sbjct: 644 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 703
Query: 400 DKSKHWGDLEEEEEEEEEEEEEEQIEEEE---------LEDGIQSVDTLSSTPTGVETPD 450
D++ WG+LE +EE EEEEEE+ +E++ + G+ + SS P G+ETP+
Sbjct: 704 DRTP-WGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPE 762
Query: 451 VIDLRKQQRKEP----ERP-LYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGA 501
+I+LRK++ +E E P L+ VL EK G ++G+TH Y ++T K A
Sbjct: 763 LIELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPA 818
>sp|Q9UUI3|SA145_SCHPO Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap145 PE=1 SV=1
Length = 601
Score = 333 bits (855), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 213/515 (41%), Positives = 289/515 (56%), Gaps = 69/515 (13%)
Query: 32 NKETERRRRRRKQKK-NKKASQQATLTDSN-NDADNETEDEDS---------------QS 74
NK++ + RR K+K +K + A L + N +D D TE+ D+ ++
Sbjct: 42 NKKSRNQVRREKKKLLREKTNSGAKLAEKNSDDKDQLTENNDNLYNDKKSNGNFYDTNKT 101
Query: 75 QVAEKVTVEYVPEKADLD--DGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKK 132
+ + + + +LD D L ++F+ +F +F A G E + + Q S +
Sbjct: 102 DSVDGMVYTTIVDSVELDPNDPLIEQFKDVFNRFK---ADGQEKDFEDTDKGQIMYSDDE 158
Query: 133 ADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVF 192
S+ E++ Q +E+ LS KK + +RM +A+LK + + DVVE WD ++ DP L
Sbjct: 159 ILSEGEEDALQKQ-QEEKLSKKKLRKLKRMTVAQLKMLSEKADVVEWWDVSSLDPLFLTH 217
Query: 193 LKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLK 252
LKAY NTVPVPRHW QKR +L G+RGIE+Q F+LP +I ATGI ++R A E E L+
Sbjct: 218 LKAYPNTVPVPRHWNQKRDYLSGQRGIERQLFELPSYIRATGIVQMRNAVHENEADMPLR 277
Query: 253 QKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILS 312
QK RER+QPKMGK+DIDYQ LHDAFF+YQTKP LT G+ Y EGKE E ++E +PG +S
Sbjct: 278 QKMRERVQPKMGKLDIDYQKLHDAFFRYQTKPVLTGFGECYFEGKELEADVKEKRPGDIS 337
Query: 313 HDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPV 372
+L+EALG+ GAPPPWL MQRYGPPPSYP LKIPG+N PIP GA +G+HPGGWGKPPV
Sbjct: 338 EELREALGIAPGAPPPWLFAMQRYGPPPSYPDLKIPGVNCPIPTGAQWGFHPGGWGKPPV 397
Query: 373 DEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWG-----------------DLE------ 409
D++ RPLYGDVFG + PV ++HWG D+E
Sbjct: 398 DQFNRPLYGDVFGNVKPRIHAGTGSPV-STQHWGELEEFEEEESSEEEESEDVEYPTEEI 456
Query: 410 -------EEEEEEEEEEEEEQIEEEELEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEP 462
E + E + E + E L QS VE D ++LRK +
Sbjct: 457 TERETIEEYQSASEPRSQREDLHAEPLTYFNQS---------NVEV-DNVELRKNTQPSS 506
Query: 463 E---RPLYQVLEEKEERIAPGTLLGTTHTYVVNTG 494
+ R LYQVL EK I+ +G H Y + T
Sbjct: 507 DAANRDLYQVLPEKSTNIS--GFMGPQHQYDIPTA 539
>sp|Q02554|CUS1_YEAST Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CUS1 PE=1 SV=1
Length = 436
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 158/283 (55%), Gaps = 19/283 (6%)
Query: 91 LDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESA------QNAESKKKADSDTEDEEQDS 144
+D L+ EF+ + ++F + ++I K +++ +N +K ++ E E+ S
Sbjct: 55 VDAKLEKEFKDVLQRFQVQENDTPKEITKDEKNNHVVIVEKNPVMNRKHTAEDELEDTPS 114
Query: 145 QPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPR 204
E+ LS +K++ + +++LK P ++E +D A P LL +K +N +PVP
Sbjct: 115 DGIEEHLSARKRRKTEKPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVPS 174
Query: 205 HWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIR----QAYIEKEDSKKLKQKQRERMQ 260
HW K+++L G+ + K+PF+LPD I T IE++R Q+ ++ +D K LK+ R R+Q
Sbjct: 175 HWQSKKEYLSGRSLLGKRPFELPDIIKKTNIEQMRSTLPQSGLDGQDEKSLKEASRARVQ 234
Query: 261 PKMGKMDIDYQVLHDAFFKYQTKPK---LTSHGDLYHEGKEF--EVKLREM----KPGIL 311
PKMG +D+DY+ LHD FFK K L GD+Y+E + E + M +PG +
Sbjct: 235 PKMGALDLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHKRPGRI 294
Query: 312 SHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPI 354
S +L+ + +P+G PPW + M+ G P YP LKI GLN I
Sbjct: 295 SQELRAIMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLNWDI 337
>sp|Q5R789|ZCHC8_PONAB Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii
GN=ZCCHC8 PE=2 SV=1
Length = 704
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 293 YHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSY 342
YH +E E + KPG++S +L++ALG+ D + PP++ M++ G PP +
Sbjct: 272 YH-AEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 320
>sp|Q6NZY4|ZCHC8_HUMAN Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens
GN=ZCCHC8 PE=1 SV=2
Length = 707
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 293 YHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSY 342
YH +E E + KPG++S +L++ALG+ D + PP++ M++ G PP +
Sbjct: 274 YH-AEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 322
>sp|Q9CYA6|ZCHC8_MOUSE Zinc finger CCHC domain-containing protein 8 OS=Mus musculus
GN=Zcchc8 PE=2 SV=3
Length = 709
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 293 YHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSY 342
YH +E E + KPG++S +L++ALG+ D + PP++ M++ G PP +
Sbjct: 277 YH-AEEVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 325
>sp|Q6DD45|ZCHC8_XENLA Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis
GN=zcchc8 PE=2 SV=1
Length = 743
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 293 YHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSY 342
YH +E E + + KPG++S +L+EALG+ D PP++ M+ G PP +
Sbjct: 259 YH-AEEVEERFGKYKPGVISEELQEALGIMDKNLPPFIYRMRELGYPPGW 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,217,867
Number of Sequences: 539616
Number of extensions: 11189126
Number of successful extensions: 173161
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 1669
Number of HSP's that attempted gapping in prelim test: 101767
Number of HSP's gapped (non-prelim): 42300
length of query: 531
length of database: 191,569,459
effective HSP length: 122
effective length of query: 409
effective length of database: 125,736,307
effective search space: 51426149563
effective search space used: 51426149563
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)