Query 009600
Match_columns 531
No_of_seqs 160 out of 227
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oei_A Major prion protein; oc 57.1 7.1 0.00024 26.6 2.4 19 352-370 5-24 (26)
2 1eov_A ASPRS, aspartyl-tRNA sy 27.7 8.6 0.00029 40.6 -1.3 74 267-341 375-452 (487)
3 3a5y_A GENX, putative lysyl-tR 25.3 48 0.0016 33.5 3.7 85 257-341 218-314 (345)
4 2e8g_A Hypothetical protein PH 16.7 23 0.0008 34.8 -0.7 31 179-210 1-37 (241)
5 2l66_A SSO7C4, transcriptional 13.7 94 0.0032 23.1 2.1 16 310-325 15-30 (53)
6 1yfb_A Transition state regula 13.0 90 0.0031 24.2 1.9 17 310-326 25-41 (59)
7 1wyd_A Hypothetical aspartyl-t 13.0 16 0.00056 37.9 -3.1 75 265-341 317-394 (429)
8 2zk9_X Protein-glutaminase; de 12.0 30 0.001 33.0 -1.3 35 329-364 49-84 (185)
9 2ca6_A RAN GTPase-activating p 11.5 1.1E+02 0.0039 29.2 2.5 17 93-109 319-335 (386)
10 1l0w_A Aspartyl-tRNA synthetas 11.2 38 0.0013 36.7 -1.0 49 291-340 469-521 (580)
No 1
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=57.14 E-value=7.1 Score=26.57 Aligned_cols=19 Identities=47% Similarity=1.102 Sum_probs=10.6
Q ss_pred CCCCCCCCCCc-cCCCCCCC
Q 009600 352 APIPPGASFGY-HPGGWGKP 370 (531)
Q Consensus 352 apiP~g~~~Gy-h~ggwGkp 370 (531)
|--|-|..||- |.++||.|
T Consensus 5 wgqp~gg~wgqphgg~wgqp 24 (26)
T 1oei_A 5 WGQPHGGGWGQPHGGGWGQP 24 (26)
T ss_dssp SSSTTSSSSTTTCSSSSSCC
T ss_pred cCCccCCcCCCCCCCcCCCC
Confidence 44455666663 45556665
No 2
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=27.68 E-value=8.6 Score=40.65 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=51.0
Q ss_pred ccchHHHHHHhh-cc-cCCCCCCCCCcccccchhHHH-hhhcCCCCCCcHHHHHHhCCCCC-CCchHHHHHHhcCCCCC
Q 009600 267 DIDYQVLHDAFF-KY-QTKPKLTSHGDLYHEGKEFEV-KLREMKPGILSHDLKEALGMPDG-APPPWLINMQRYGPPPS 341 (531)
Q Consensus 267 DIDYqkLhDAFF-k~-qtKP~Lt~~GDlYYEGKe~e~-~~~~~kPG~LS~eLR~ALGm~~~-~pPPWl~~MQr~GpPPS 341 (531)
-.||-..|.+|| +- ...|.++.-=|||..|.|.-. ..+...|-.+-..+ +++|+++. ..--|++..-+||+||.
T Consensus 375 v~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~-~~~g~~~~~~~~~~yl~al~yG~PPh 452 (487)
T 1eov_A 375 LDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERM-KAHGLSPEDPGLKDYCDGFSYGCPPH 452 (487)
T ss_dssp EECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHH-HHTTCCTTSTTTHHHHHHHTTCCCCE
T ss_pred EECCccccChhhcCcCCCCCCeEEEEEEEeCCEEEEeeEEecCCHHHHHHHH-HHcCCChhhhhHHHHHHHHhcCCCCC
Confidence 348888888887 32 346788888899999987632 12233343344444 45798876 34579999999999984
No 3
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=25.31 E-value=48 Score=33.54 Aligned_cols=85 Identities=15% Similarity=0.264 Sum_probs=54.5
Q ss_pred hhhCCCCCc----cccchHHHHHHhhccc-CCCCCCCCCcccccchhHHHhh-hcCCCCCC------cHHHHHHhCCCCC
Q 009600 257 ERMQPKMGK----MDIDYQVLHDAFFKYQ-TKPKLTSHGDLYHEGKEFEVKL-REMKPGIL------SHDLKEALGMPDG 324 (531)
Q Consensus 257 ervqPKmGk----lDIDYqkLhDAFFk~q-tKP~Lt~~GDlYYEGKe~e~~~-~~~kPG~L------S~eLR~ALGm~~~ 324 (531)
+.|.|++|. +-+||=..--+|-+.- ..|.++.-=|||..|.|.-... +-..|-.+ -.+.|+++|+.+.
T Consensus 218 ~~ve~~lg~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~ 297 (345)
T 3a5y_A 218 FGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQH 297 (345)
T ss_dssp HHTGGGSSSSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHcCCCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChh
Confidence 567888873 4567766555664433 3466776779999998641100 00011111 2456677899888
Q ss_pred CCchHHHHHHhcCCCCC
Q 009600 325 APPPWLINMQRYGPPPS 341 (531)
Q Consensus 325 ~pPPWl~~MQr~GpPPS 341 (531)
...-|++..-+||+||.
T Consensus 298 ~~d~~yl~al~yG~PPh 314 (345)
T 3a5y_A 298 PIDQNLIEALKVGMPDC 314 (345)
T ss_dssp CCCHHHHHHHHHCCCSE
T ss_pred hHHHHHHHHHhcCCCCC
Confidence 77789999999999984
No 4
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=16.66 E-value=23 Score=34.82 Aligned_cols=31 Identities=39% Similarity=0.653 Sum_probs=22.9
Q ss_pred eecCCCCChHHHHHHHhc---CCCc---cCCccccccc
Q 009600 179 VWDATASDPKLLVFLKAY---RNTV---PVPRHWCQKR 210 (531)
Q Consensus 179 ~~D~tA~DP~lLv~lKs~---rNtV---PVP~HW~~KR 210 (531)
+|| ||.||+|||.-|+. +++| -++.||.-|+
T Consensus 1 ~~d-t~~d~r~~~ae~~~~~~~~~~~~~~~~~~~~kk~ 37 (241)
T 2e8g_A 1 MWD-TSKDYRLLVAEKSVELFIRTIEGAKFRGQWDKKR 37 (241)
T ss_dssp CCC-GGGCHHHHHHHHHHHHHHHHHHTSCCCTTSCHHH
T ss_pred CCC-cccchHHHHHHHHHHHHHHHHhccCccccccHHH
Confidence 355 79999999987763 4544 8899998543
No 5
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=13.71 E-value=94 Score=23.06 Aligned_cols=16 Identities=6% Similarity=0.418 Sum_probs=14.2
Q ss_pred CCcHHHHHHhCCCCCC
Q 009600 310 ILSHDLKEALGMPDGA 325 (531)
Q Consensus 310 ~LS~eLR~ALGm~~~~ 325 (531)
.|..++|++|||.+|.
T Consensus 15 ~IPk~ir~~lgi~~Gd 30 (53)
T 2l66_A 15 TIPAKVRQKFQIKEGD 30 (53)
T ss_dssp CCCHHHHHHSCCCTTC
T ss_pred EeCHHHHHHcCcCCCC
Confidence 5789999999999885
No 6
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=13.00 E-value=90 Score=24.25 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=14.7
Q ss_pred CCcHHHHHHhCCCCCCC
Q 009600 310 ILSHDLKEALGMPDGAP 326 (531)
Q Consensus 310 ~LS~eLR~ALGm~~~~p 326 (531)
+|..++|++|||.+|..
T Consensus 25 tIPkeiR~~Lgi~~Gd~ 41 (59)
T 1yfb_A 25 VIPIELRRTLGIAEKDA 41 (59)
T ss_dssp ECCHHHHHHTTCCTTCE
T ss_pred EeCHHHHHHcCCCCCCE
Confidence 57899999999999863
No 7
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=12.97 E-value=16 Score=37.93 Aligned_cols=75 Identities=23% Similarity=0.335 Sum_probs=50.0
Q ss_pred ccccchHHHHHHhhccc--CCCCCCCCCcccccchhHHHh-hhcCCCCCCcHHHHHHhCCCCCCCchHHHHHHhcCCCCC
Q 009600 265 KMDIDYQVLHDAFFKYQ--TKPKLTSHGDLYHEGKEFEVK-LREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPS 341 (531)
Q Consensus 265 klDIDYqkLhDAFFk~q--tKP~Lt~~GDlYYEGKe~e~~-~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPS 341 (531)
.+-+||=..+.+|+.-. ..|.++.-=|||..|.|+-.. .+...|-.+-..++ ++|+++.. --|++..-+||+||.
T Consensus 317 ~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~-~~g~~~~~-~~~yl~al~yG~PP~ 394 (429)
T 1wyd_A 317 YFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALK-KKGLKPES-FEFFLKWFDYGMPPH 394 (429)
T ss_dssp EEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCGGG-GHHHHGGGGSCCCCE
T ss_pred EEEecCChhhChhhCCcCCCCCCeEEEEEEEECCEEEEeCeeeeCCHHHHHHHHH-HcCCChHH-HHHHHHHHhcCCCCc
Confidence 45678888788876432 357788888999999976321 22333434444444 46887654 489999999999873
No 8
>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A {Chryseobacterium proteolyticum} PDB: 2ksv_A 2z8t_X
Probab=12.03 E-value=30 Score=32.99 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCCCCCCCcccccCCCCCCCC-CCCccC
Q 009600 329 WLINMQRYGPPPSYPHLKIPGLNAPIPPGA-SFGYHP 364 (531)
Q Consensus 329 Wl~~MQr~GpPPSYP~LkIpGLNapiP~g~-~~Gyh~ 364 (531)
|...|+++|.+|.=- +.+--|-+|+|+|+ .||||-
T Consensus 49 m~~~l~~~Gi~p~Ki-Fv~g~L~a~t~~GtVsW~YHV 84 (185)
T 2zk9_X 49 MRQILMNNGYDCEKQ-FVYGNLKASTGTCCVAWSYHV 84 (185)
T ss_dssp HHHHHHHTTBCCEEE-EEEEEEEEECSSCEEEEEEEE
T ss_pred HHHHHHHcCCChhhe-EEEeeeeecCCCceeceeeee
Confidence 667789999886410 11112344567766 799994
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=11.52 E-value=1.1e+02 Score=29.17 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=11.5
Q ss_pred chhHHHHHHHHhhccCC
Q 009600 93 DGLDDEFRKIFEKFSFH 109 (531)
Q Consensus 93 d~~~~~F~~VF~kF~~~ 109 (531)
.+....+..+|.+.+..
T Consensus 319 ~~~~~~l~~~l~~~~~~ 335 (386)
T 2ca6_A 319 DDVVDEIREVFSTRGRG 335 (386)
T ss_dssp SHHHHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHhhhcCcc
Confidence 34467788888887644
No 10
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=11.21 E-value=38 Score=36.69 Aligned_cols=49 Identities=24% Similarity=0.507 Sum_probs=0.0
Q ss_pred cccccchhHHH-hhhcCCCCCCcHHHHHHhCCCCCCCch---HHHHHHhcCCCC
Q 009600 291 DLYHEGKEFEV-KLREMKPGILSHDLKEALGMPDGAPPP---WLINMQRYGPPP 340 (531)
Q Consensus 291 DlYYEGKe~e~-~~~~~kPG~LS~eLR~ALGm~~~~pPP---Wl~~MQr~GpPP 340 (531)
|||..|.|.-. ..+-..|-.+-..++ ++||++...-. |++..-+||+||
T Consensus 469 DL~i~G~Ei~~Gs~ri~d~~~q~~rf~-~~g~~~ee~~~~~~~~L~al~yG~PP 521 (580)
T 1l0w_A 469 DLVLNGVEVGGGSIRIHDPRLQARVFR-LLGIGEEEQREKFGFFLEALEYGAPP 521 (580)
T ss_dssp EEEETTEEEEEEEEBCCCHHHHHHHHH-HHTCCTTTHHHHTHHHHHHTTBTCCC
T ss_pred EEEeCCEEEEeCeeecCCHHHHHHHHH-HcCCChhHHHhHHHHHHHHHhcCCCC
Done!