Query 009600
Match_columns 531
No_of_seqs 160 out of 227
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 08:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009600.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009600hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p90a_ c.55.5.2 (A:) NafY cor 18.6 21 0.0016 28.2 1.7 10 323-332 112-121 (123)
2 d1n9wa2 d.104.1.1 (A:111-414) 17.3 4.9 0.00036 36.6 -3.0 74 266-341 203-277 (304)
3 d1eova2 d.104.1.1 (A:205-557) 14.6 23 0.0016 32.8 0.9 72 269-341 243-318 (353)
4 d1l0wa3 d.104.1.1 (A:105-294,A 13.2 14 0.001 34.7 -1.1 51 290-341 244-298 (356)
5 d1rw0a_ d.194.1.2 (A:) Hypothe 12.6 39 0.0029 30.2 2.0 34 344-379 3-38 (243)
6 d1yfba1 b.129.1.3 (A:3-53) Tra 12.0 41 0.003 24.4 1.5 17 310-326 17-33 (51)
7 d1uwda_ d.52.8.2 (A:) Hypothet 10.1 47 0.0034 26.2 1.4 16 306-321 87-102 (102)
8 d1gsoa1 b.84.2.1 (A:328-426) G 10.1 56 0.0041 25.5 1.8 32 334-366 10-42 (99)
9 d2sqca2 a.102.4.2 (A:37-307) S 9.8 65 0.0048 28.7 2.4 7 328-334 30-36 (271)
10 d2hmfa2 d.58.18.10 (A:404-470) 9.1 51 0.0037 23.9 1.2 8 271-278 58-65 (67)
No 1
>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii [TaxId: 354]}
Probab=18.59 E-value=21 Score=28.23 Aligned_cols=10 Identities=60% Similarity=1.610 Sum_probs=8.3
Q ss_pred CCCCchHHHH
Q 009600 323 DGAPPPWLIN 332 (531)
Q Consensus 323 ~~~pPPWl~~ 332 (531)
-+.|||||-+
T Consensus 112 ~~~~p~~l~k 121 (123)
T d1p90a_ 112 AGSPPPWLAK 121 (123)
T ss_dssp HSCCCHHHHH
T ss_pred CCCCChHHhh
Confidence 5789999975
No 2
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=17.31 E-value=4.9 Score=36.62 Aligned_cols=74 Identities=27% Similarity=0.317 Sum_probs=45.1
Q ss_pred cccchHHHHHHhhcccCCCCCCCCCcccccchhHHHh-hhcCCCCCCcHHHHHHhCCCCCCCchHHHHHHhcCCCCC
Q 009600 266 MDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVK-LREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPS 341 (531)
Q Consensus 266 lDIDYqkLhDAFFk~qtKP~Lt~~GDlYYEGKe~e~~-~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPS 341 (531)
+-.||-+-.-+|++.-..+..+.-=|||+.|.|+-.. .+...|=.+.+.++ +.|+.+.. --|++++-++|+||.
T Consensus 203 fi~~~P~~~~p~~~~~~~~~~a~rfel~~~G~El~nG~~e~~d~~~l~~r~~-~~~~~~e~-~~~yl~al~~G~PP~ 277 (304)
T d1n9wa2 203 FVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLK-AKGMDPEA-FHGYLEVFKYGMPPH 277 (304)
T ss_dssp EEECCBGGGSCTTBCBCTTSBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCGGG-GHHHHGGGGBCCCSE
T ss_pred EEeCChhhhCchhhcccccceeehhccccCcEEEeccccccCCHHHHHHHHH-HcCCCHHH-HHHHHHHHhcCCCCC
Confidence 4557777667777655555555445999999986211 11222223334443 34665433 369999999999994
No 3
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.55 E-value=23 Score=32.75 Aligned_cols=72 Identities=19% Similarity=0.340 Sum_probs=41.2
Q ss_pred chHHHHHHhhcc--cCCCCCCCCCcccccchhHHHhh-hcCCCCCCcHHHHHHhCCCCCC-CchHHHHHHhcCCCCC
Q 009600 269 DYQVLHDAFFKY--QTKPKLTSHGDLYHEGKEFEVKL-REMKPGILSHDLKEALGMPDGA-PPPWLINMQRYGPPPS 341 (531)
Q Consensus 269 DYqkLhDAFFk~--qtKP~Lt~~GDlYYEGKe~e~~~-~~~kPG~LS~eLR~ALGm~~~~-pPPWl~~MQr~GpPPS 341 (531)
||=.-.-+||.. ...|.++..=|+|+.|.|+-... +...|=.+-..+ ++.|+.+.. .--|++.+-+||+||.
T Consensus 243 ~~P~~~~p~~~~~~~~~~~~a~rfeL~~~G~El~nG~~e~~d~~~~~~r~-~~~~~~~~~~~~~~yl~al~~G~PP~ 318 (353)
T d1eova2 243 KFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERM-KAHGLSPEDPGLKDYCDGFSYGCPPH 318 (353)
T ss_dssp CCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHH-HHTTCCTTSTTTHHHHHHHTTCCCCE
T ss_pred CCcHHHhhhhhCCChhhhhhhhceeeeeeceEEcceecccCCHHHHHHHH-HHcCCChhhhHHHHHHHHhHcCCCCC
Confidence 354444455543 23566777778999999863211 111111122222 345776543 2359999999999983
No 4
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=13.24 E-value=14 Score=34.71 Aligned_cols=51 Identities=24% Similarity=0.411 Sum_probs=30.8
Q ss_pred CcccccchhHHHh-hhcCCCCCCcHHHHHHhCCCCCCC---chHHHHHHhcCCCCC
Q 009600 290 GDLYHEGKEFEVK-LREMKPGILSHDLKEALGMPDGAP---PPWLINMQRYGPPPS 341 (531)
Q Consensus 290 GDlYYEGKe~e~~-~~~~kPG~LS~eLR~ALGm~~~~p---PPWl~~MQr~GpPPS 341 (531)
=|+|+.|.|.-.. .+...|-.+-..+ ++.|+..... --|++.+-+||+||.
T Consensus 244 FdL~~~G~ElanG~~r~~d~~~~~~r~-~~~~~~~~~~~~~~~~yl~a~~~G~PP~ 298 (356)
T d1l0wa3 244 YDLVLNGVEVGGGSIRIHDPRLQARVF-RLLGIGEEEQREKFGFFLEALEYGAPPH 298 (356)
T ss_dssp EEEEETTEEEEEEEEBCCCHHHHHHHH-HHHTCCTTTHHHHTHHHHHHTTBTCCCE
T ss_pred eecccCCEEeeccEEEeCcHHHHHHHH-HHHcCCchhhHHHHHHHHHHhhCCCCCc
Confidence 3899999876321 1122332233333 3567766532 359999999999984
No 5
>d1rw0a_ d.194.1.2 (A:) Hypothetical protein yfiH {Salmonella typhi [TaxId: 90370]}
Probab=12.65 E-value=39 Score=30.22 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=25.6
Q ss_pred CCcccccCCCCCCCCCCCccC--CCCCCCCCCCCCCcc
Q 009600 344 HLKIPGLNAPIPPGASFGYHP--GGWGKPPVDEYGRPL 379 (531)
Q Consensus 344 ~LkIpGLNapiP~g~~~Gyh~--ggwGkppvde~g~PL 379 (531)
+|-|| |||+|+|...+|-+ ||--++|.+..|--+
T Consensus 3 ~~i~p--~W~~p~~v~~~fTtR~GGvS~~~y~slNl~~ 38 (243)
T d1rw0a_ 3 ALIVP--QWPLPKGVAACSSTRIGGVSLSPYDSLNLGA 38 (243)
T ss_dssp TEECC--CSCCCTTEEEEEECSCSCCCCTTSCSCCCCT
T ss_pred ccccC--CCCCCCCCEEEEEECCCCccCCccccccCCC
Confidence 56788 89999999999977 555578887765333
No 6
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]}
Probab=12.03 E-value=41 Score=24.39 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=14.7
Q ss_pred CCcHHHHHHhCCCCCCC
Q 009600 310 ILSHDLKEALGMPDGAP 326 (531)
Q Consensus 310 ~LS~eLR~ALGm~~~~p 326 (531)
+|-.|||.+|||.++.|
T Consensus 17 ViPkElR~~L~I~~~d~ 33 (51)
T d1yfba1 17 VIPIELRRTLGIAEKDA 33 (51)
T ss_dssp ECCHHHHHHTTCCTTCE
T ss_pred EccHHHHHhcCCCCCCc
Confidence 47789999999999865
No 7
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=10.05 E-value=47 Score=26.15 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=13.7
Q ss_pred CCCCCCcHHHHHHhCC
Q 009600 306 MKPGILSHDLKEALGM 321 (531)
Q Consensus 306 ~kPG~LS~eLR~ALGm 321 (531)
..|..+|++.|++|||
T Consensus 87 W~~~~~s~~~r~~lG~ 102 (102)
T d1uwda_ 87 WTPERMSPELREKFGV 102 (102)
T ss_dssp CCGGGSCHHHHHHHTC
T ss_pred CChHHCCHHHHHHcCC
Confidence 4677889999999997
No 8
>d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Escherichia coli [TaxId: 562]}
Probab=10.05 E-value=56 Score=25.55 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=22.9
Q ss_pred HhcCCCCCCC-CCcccccCCCCCCCCCCCccCCC
Q 009600 334 QRYGPPPSYP-HLKIPGLNAPIPPGASFGYHPGG 366 (531)
Q Consensus 334 Qr~GpPPSYP-~LkIpGLNapiP~g~~~Gyh~gg 366 (531)
-.-|.|=+|+ +..|.||+..-..++.+ ||.|-
T Consensus 10 As~GYP~~~~kg~~I~~~~~~~~~~~~i-fhagt 42 (99)
T d1gsoa1 10 AAGGYPGDYRTGDVIHGLPLEEVAGGKV-FHAGT 42 (99)
T ss_dssp EETTTTSCCCCCCBCBCCCSSCCTTEEE-EESSE
T ss_pred ccCCCCCCccCCCcccccccccccceEE-eeeee
Confidence 3458888888 78899998666666654 77654
No 9
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=9.77 E-value=65 Score=28.66 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=6.2
Q ss_pred hHHHHHH
Q 009600 328 PWLINMQ 334 (531)
Q Consensus 328 PWl~~MQ 334 (531)
-||.+.|
T Consensus 30 ~~l~~~Q 36 (271)
T d2sqca2 30 RYLLHEQ 36 (271)
T ss_dssp HHHHHHS
T ss_pred HHHHHcc
Confidence 6999998
No 10
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=9.10 E-value=51 Score=23.93 Aligned_cols=8 Identities=38% Similarity=0.837 Sum_probs=0.0
Q ss_pred HHHHHHhh
Q 009600 271 QVLHDAFF 278 (531)
Q Consensus 271 qkLhDAFF 278 (531)
+.||++||
T Consensus 58 ~~Lh~~F~ 65 (67)
T d2hmfa2 58 RKLHEKFI 65 (67)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Done!