Query 009603
Match_columns 531
No_of_seqs 484 out of 3081
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 15:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 1.4E-99 3E-104 831.5 51.2 512 14-525 12-523 (623)
2 PF12819 Malectin_like: Carboh 100.0 2.3E-65 4.9E-70 522.9 31.8 323 30-364 1-347 (347)
3 PLN03150 hypothetical protein; 99.8 1.6E-19 3.5E-24 198.9 25.1 89 422-510 444-533 (623)
4 PF11721 Malectin: Di-glucose 99.8 1.1E-20 2.3E-25 174.7 5.0 141 195-347 2-151 (174)
5 PF11721 Malectin: Di-glucose 99.6 2.8E-15 6.1E-20 138.6 9.7 134 28-170 3-174 (174)
6 PLN00113 leucine-rich repeat r 99.5 3.8E-13 8.3E-18 157.1 14.6 145 371-525 26-196 (968)
7 PLN00113 leucine-rich repeat r 99.1 1.6E-10 3.5E-15 135.1 8.0 105 421-526 476-580 (968)
8 PF12819 Malectin_like: Carboh 98.9 5.5E-09 1.2E-13 107.4 10.3 156 198-367 1-164 (347)
9 KOG0617 Ras suppressor protein 98.8 4.1E-10 8.8E-15 100.4 -2.3 88 422-512 35-123 (264)
10 PF13855 LRR_8: Leucine rich r 98.6 2.6E-08 5.5E-13 75.3 3.0 61 444-504 1-61 (61)
11 KOG0617 Ras suppressor protein 98.6 3.5E-09 7.6E-14 94.5 -2.2 91 422-515 58-172 (264)
12 KOG4194 Membrane glycoprotein 98.5 1.1E-08 2.3E-13 106.7 -0.9 103 422-525 271-373 (873)
13 PF13855 LRR_8: Leucine rich r 98.4 1.6E-07 3.5E-12 70.9 2.6 59 422-480 3-61 (61)
14 KOG0444 Cytoskeletal regulator 98.4 2.4E-08 5.1E-13 104.7 -3.0 101 421-525 269-370 (1255)
15 KOG4194 Membrane glycoprotein 98.3 1.5E-07 3.2E-12 98.3 1.4 104 422-526 247-350 (873)
16 KOG0444 Cytoskeletal regulator 98.3 9.2E-08 2E-12 100.4 -0.3 102 421-526 79-182 (1255)
17 PF14580 LRR_9: Leucine-rich r 98.3 7.3E-07 1.6E-11 82.1 4.8 103 421-527 43-150 (175)
18 KOG3593 Predicted receptor-lik 98.3 1E-06 2.2E-11 84.2 4.9 107 253-364 107-228 (355)
19 KOG0472 Leucine-rich repeat pr 98.2 1.1E-07 2.4E-12 95.3 -2.2 97 422-525 208-305 (565)
20 KOG0618 Serine/threonine phosp 98.2 2.1E-07 4.6E-12 101.9 -0.3 100 421-526 384-485 (1081)
21 PF14580 LRR_9: Leucine-rich r 98.1 3E-06 6.5E-11 78.1 4.9 98 421-525 20-121 (175)
22 KOG0472 Leucine-rich repeat pr 98.1 8.1E-07 1.7E-11 89.2 0.6 86 422-511 437-545 (565)
23 KOG4237 Extracellular matrix p 98.0 1.3E-06 2.9E-11 87.6 -0.4 106 409-516 51-163 (498)
24 PRK15370 E3 ubiquitin-protein 97.9 7.9E-05 1.7E-09 83.8 12.7 35 367-401 56-97 (754)
25 KOG4579 Leucine-rich repeat (L 97.9 1.4E-06 2.9E-11 75.4 -1.0 89 421-512 54-142 (177)
26 PF12799 LRR_4: Leucine Rich r 97.9 9.5E-06 2.1E-10 56.8 3.3 36 469-505 2-37 (44)
27 PRK15387 E3 ubiquitin-protein 97.9 9.5E-06 2.1E-10 90.8 4.9 85 421-514 383-467 (788)
28 cd00116 LRR_RI Leucine-rich re 97.9 6.1E-06 1.3E-10 83.6 2.0 106 421-526 109-230 (319)
29 KOG0532 Leucine-rich repeat (L 97.9 1.6E-06 3.5E-11 90.7 -2.2 98 422-525 145-242 (722)
30 cd00116 LRR_RI Leucine-rich re 97.9 6.8E-06 1.5E-10 83.3 2.3 105 421-526 166-287 (319)
31 PLN03210 Resistant to P. syrin 97.8 3.9E-05 8.4E-10 91.3 8.4 101 422-526 613-713 (1153)
32 KOG0618 Serine/threonine phosp 97.8 6.2E-06 1.3E-10 90.8 1.3 91 421-515 46-136 (1081)
33 PRK15370 E3 ubiquitin-protein 97.8 4.1E-05 8.9E-10 86.1 7.1 81 422-512 222-302 (754)
34 PF12799 LRR_4: Leucine Rich r 97.7 2.6E-05 5.6E-10 54.6 3.1 37 444-481 1-37 (44)
35 PLN03210 Resistant to P. syrin 97.7 0.0001 2.2E-09 87.9 8.6 102 421-525 779-901 (1153)
36 KOG1259 Nischarin, modulator o 97.7 1.1E-05 2.3E-10 78.5 0.1 81 420-505 307-387 (490)
37 PRK15387 E3 ubiquitin-protein 97.6 7.4E-05 1.6E-09 83.9 6.3 72 444-525 382-453 (788)
38 KOG4579 Leucine-rich repeat (L 97.6 5.1E-06 1.1E-10 71.9 -2.3 98 422-524 29-130 (177)
39 COG4886 Leucine-rich repeat (L 97.5 4.8E-05 1E-09 79.8 2.9 86 422-511 118-204 (394)
40 KOG0532 Leucine-rich repeat (L 97.5 1.4E-05 3.1E-10 83.7 -1.4 91 420-515 166-256 (722)
41 KOG4237 Extracellular matrix p 97.5 3.7E-05 8.1E-10 77.4 1.0 86 420-505 274-359 (498)
42 KOG4658 Apoptotic ATPase [Sign 97.4 8.5E-05 1.8E-09 84.9 2.6 105 421-527 546-652 (889)
43 KOG1259 Nischarin, modulator o 97.1 0.00014 3.1E-09 70.8 0.5 80 422-505 331-412 (490)
44 PF08263 LRRNT_2: Leucine rich 97.0 0.00083 1.8E-08 46.6 3.7 35 373-412 2-43 (43)
45 COG4886 Leucine-rich repeat (L 96.9 0.00028 6.1E-09 74.0 0.9 79 422-503 142-220 (394)
46 KOG1859 Leucine-rich repeat pr 96.8 9.2E-05 2E-09 79.8 -3.9 81 421-507 188-269 (1096)
47 KOG4658 Apoptotic ATPase [Sign 96.8 0.00067 1.5E-08 77.7 2.7 83 420-503 571-653 (889)
48 KOG2739 Leucine-rich acidic nu 96.4 0.0026 5.6E-08 61.2 3.5 99 422-525 45-151 (260)
49 KOG1859 Leucine-rich repeat pr 96.3 0.00029 6.3E-09 76.1 -4.1 94 425-526 169-263 (1096)
50 KOG0531 Protein phosphatase 1, 96.0 0.0035 7.5E-08 66.4 2.4 83 422-510 97-179 (414)
51 KOG2982 Uncharacterized conser 95.8 0.0024 5.2E-08 62.5 -0.0 72 405-479 85-157 (418)
52 KOG0531 Protein phosphatase 1, 95.8 0.0029 6.4E-08 66.9 0.5 98 422-526 74-171 (414)
53 KOG3207 Beta-tubulin folding c 95.7 0.0019 4.1E-08 66.2 -1.0 104 421-525 198-309 (505)
54 KOG1644 U2-associated snRNP A' 95.4 0.018 4E-07 53.5 4.2 100 422-525 44-148 (233)
55 KOG2739 Leucine-rich acidic nu 95.1 0.018 3.8E-07 55.6 3.1 83 440-526 39-125 (260)
56 KOG3207 Beta-tubulin folding c 94.9 0.0079 1.7E-07 61.8 0.4 83 422-505 224-314 (505)
57 KOG2123 Uncharacterized conser 94.6 0.0034 7.4E-08 60.9 -3.0 65 442-509 39-105 (388)
58 PF00560 LRR_1: Leucine Rich R 94.6 0.015 3.2E-07 34.0 0.8 18 470-488 2-19 (22)
59 KOG2120 SCF ubiquitin ligase, 92.9 0.0071 1.5E-07 59.3 -4.1 86 445-530 186-273 (419)
60 KOG0473 Leucine-rich repeat pr 92.7 0.0042 9E-08 58.8 -5.9 82 421-505 43-124 (326)
61 PRK15386 type III secretion pr 92.5 0.23 5.1E-06 51.8 5.9 12 493-504 157-168 (426)
62 KOG1644 U2-associated snRNP A' 92.3 0.14 3.1E-06 47.8 3.6 60 444-505 42-101 (233)
63 PRK15386 type III secretion pr 92.3 0.33 7.2E-06 50.7 6.7 10 445-454 95-104 (426)
64 COG5238 RNA1 Ran GTPase-activa 91.9 0.1 2.2E-06 50.8 2.3 42 440-481 88-133 (388)
65 KOG2982 Uncharacterized conser 91.5 0.061 1.3E-06 52.9 0.3 84 421-504 72-158 (418)
66 PF13504 LRR_7: Leucine rich r 91.4 0.13 2.7E-06 28.0 1.3 13 493-505 2-14 (17)
67 smart00370 LRR Leucine-rich re 91.2 0.19 4.1E-06 30.4 2.2 22 491-513 1-22 (26)
68 smart00369 LRR_TYP Leucine-ric 91.2 0.19 4.1E-06 30.4 2.2 22 491-513 1-22 (26)
69 KOG1909 Ran GTPase-activating 91.1 0.12 2.5E-06 52.1 1.9 88 441-528 154-252 (382)
70 PF13504 LRR_7: Leucine rich r 89.7 0.19 4.2E-06 27.3 1.2 13 469-481 2-14 (17)
71 KOG3665 ZYG-1-like serine/thre 88.8 0.21 4.5E-06 56.2 1.7 86 421-508 174-266 (699)
72 KOG3665 ZYG-1-like serine/thre 88.8 0.14 3.1E-06 57.4 0.4 102 421-525 149-258 (699)
73 COG5238 RNA1 Ran GTPase-activa 88.8 0.57 1.2E-05 45.8 4.4 16 490-505 212-227 (388)
74 KOG1909 Ran GTPase-activating 87.4 0.093 2E-06 52.7 -1.9 86 420-505 213-311 (382)
75 KOG0473 Leucine-rich repeat pr 87.1 0.013 2.8E-07 55.6 -7.6 82 438-523 36-117 (326)
76 PF13306 LRR_5: Leucine rich r 85.8 1.4 3E-05 37.7 4.9 96 422-523 14-109 (129)
77 KOG3593 Predicted receptor-lik 85.5 0.84 1.8E-05 44.6 3.5 88 28-122 62-157 (355)
78 smart00369 LRR_TYP Leucine-ric 84.4 0.83 1.8E-05 27.5 2.0 20 467-487 1-20 (26)
79 smart00370 LRR Leucine-rich re 84.4 0.83 1.8E-05 27.5 2.0 20 467-487 1-20 (26)
80 KOG2123 Uncharacterized conser 83.5 0.1 2.2E-06 51.0 -3.6 77 420-498 41-123 (388)
81 PF13306 LRR_5: Leucine rich r 77.8 3 6.6E-05 35.5 4.0 88 422-516 37-125 (129)
82 smart00364 LRR_BAC Leucine-ric 76.5 1.6 3.5E-05 26.6 1.3 18 492-510 2-19 (26)
83 KOG2120 SCF ubiquitin ligase, 75.7 0.11 2.3E-06 51.4 -6.3 104 422-525 212-321 (419)
84 PF13516 LRR_6: Leucine Rich r 73.0 0.81 1.8E-05 27.0 -0.7 14 492-505 2-15 (24)
85 smart00365 LRR_SD22 Leucine-ri 61.7 6.7 0.00015 23.9 1.8 14 468-481 2-15 (26)
86 smart00368 LRR_RI Leucine rich 52.7 11 0.00024 23.2 1.7 11 494-504 4-14 (28)
87 KOG3864 Uncharacterized conser 46.8 3.2 6.8E-05 39.0 -2.0 81 421-501 102-185 (221)
88 KOG1947 Leucine rich repeat pr 43.1 9.3 0.0002 40.5 0.5 85 420-504 214-307 (482)
89 PRK06764 hypothetical protein; 34.4 37 0.00081 26.9 2.5 18 85-102 74-91 (105)
90 PF03944 Endotoxin_C: delta en 34.0 3.3E+02 0.0071 23.9 11.3 80 91-176 48-143 (143)
91 KOG3763 mRNA export factor TAP 33.5 20 0.00044 38.7 1.2 65 420-484 218-286 (585)
92 PF03422 CBM_6: Carbohydrate b 32.8 2.9E+02 0.0064 23.1 9.8 73 269-348 33-108 (125)
93 KOG1947 Leucine rich repeat pr 23.6 39 0.00085 35.7 1.3 79 421-499 244-328 (482)
94 KOG3763 mRNA export factor TAP 20.8 50 0.0011 35.8 1.3 63 443-507 217-285 (585)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-99 Score=831.46 Aligned_cols=512 Identities=80% Similarity=1.308 Sum_probs=448.8
Q ss_pred HhhccccccCCCCcEEEccCCCCCCcCCCCCceeeccCcccCCcccccCCCCCCCCCcceeeccCCCCCCcceEEeeecC
Q 009603 14 SALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVP 93 (531)
Q Consensus 14 ~~~~~~~~~~~~~~i~IdCG~~~~~~~~~~g~~w~~D~~~~~~~~~~~~~~~~~~~~y~t~R~F~~~~g~~~cY~~~~~~ 93 (531)
+++.++++++++++|+||||++.+.++|.+||+|++|..|++|.......+....++|+|+|+||..+|+++||+||+++
T Consensus 12 ~~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~~~~~ 91 (623)
T PLN03150 12 LAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRPSFIAPPLKTLRYFPLSDGPENCYNINRVP 91 (623)
T ss_pred HHhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCcccccchhhccccCCcccccccceEeeecC
Confidence 34445566678899999999998754556899999998877655444444444567899999999767889999999999
Q ss_pred CceeEEEEEEecccCCCCCCCCcEEEEEcCeeEEEeecCCCCCccceEEEEEEEecCCeEEEEEeecCCCCCcEEeEEEE
Q 009603 94 KGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEIL 173 (531)
Q Consensus 94 ~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w~~v~~~~~~~~~~~~~E~~~~~~~~~l~v~f~~~~~~~pfIsaiEl~ 173 (531)
+|+|+|||||+||+||+.++.|.|||++|++.|.+|+.+|+..+..++||++++++++.++|||+|++.++||||+||||
T Consensus 92 ~g~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~ 171 (623)
T PLN03150 92 KGHYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEIL 171 (623)
T ss_pred CCcEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccCCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEE
Confidence 99999999999999999889999999999999999999887667789999999999999999999998999999999999
Q ss_pred EcCCCccccCCCCccceeEEEEeeecCCCCCCCCcCCCCCCCCCCCCcccCCCCCCCCCccccccccceecCCCCCCCCh
Q 009603 174 QVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYP 253 (531)
Q Consensus 174 ~l~~~~y~~~~~~~~~~~l~~~~Rin~G~~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P 253 (531)
|+|+++|..+.+...+.+|+++||+||||....+.+||++|+|++||+|.+|..+....+..+++...|.++...++.+|
T Consensus 172 ~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P 251 (623)
T PLN03150 172 QVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYP 251 (623)
T ss_pred EcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccCh
Confidence 99999997543223467899999999999877777999999999999999987655455666777777776556677899
Q ss_pred HHHHHHhhccCCCCCCeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeccCCceeeecCCceeeEEEEE
Q 009603 254 EALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNT 333 (531)
Q Consensus 254 ~~Vy~TAr~~~~~~~~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~ 333 (531)
+.||||||++.+...+++|.|++++++.|+|||||||++......++|+|||+|||+.+++++|+...+++.+.++++++
T Consensus 252 ~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~ 331 (623)
T PLN03150 252 ESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNK 331 (623)
T ss_pred HHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEe
Confidence 99999999987655689999999999999999999999754456789999999999999999999887777778899998
Q ss_pred EeeecCceEEEEEccCCCchhhhhhHhhhhhhhhccCCchHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccccc
Q 009603 334 TVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQF 413 (531)
Q Consensus 334 ~v~~~~~~l~i~~~p~~~~~p~lnalei~~~~~~~~~~~~~~~~aL~~~k~~~~~~~~~~W~~~~C~~~~~~w~gv~C~~ 413 (531)
.+.++++.++|+|+|..+++|+||||||+++...+..+.+.|+.||+.+|+.+..+...+|+++||.|..++|.||.|..
T Consensus 332 ~v~~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~ 411 (623)
T PLN03150 332 TVAVSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQF 411 (623)
T ss_pred EEeecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeec
Confidence 88887888999999998888999999999999988888999999999999998766445899999998888999999975
Q ss_pred CCCCcceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCC
Q 009603 414 DRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTA 493 (531)
Q Consensus 414 ~~~~~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 493 (531)
+.......++.|+|++|++.|.+|..+++|++|+.|+|++|.+.|.+|..++.|++|+.|+|++|+|+|.+|+.+++|++
T Consensus 412 ~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred cCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 44333356999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603 494 LRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 494 L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+.|+|++|+|+|.+|..++....++..+++.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEec
Confidence 99999999999999999998876666666655
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=2.3e-65 Score=522.92 Aligned_cols=323 Identities=30% Similarity=0.487 Sum_probs=255.4
Q ss_pred EccCCCCCC--c-CCCCCceeeccCcccC-CcccccC-----CCCCCCCCcceeeccCCCCCCcceEEeeec--CCceeE
Q 009603 30 ISCGARQNI--H-SPPTNTLWFKDFAYTG-GIPANAT-----RPSFITPPLKTLRYFPLSEGPENCYIINRV--PKGHYN 98 (531)
Q Consensus 30 IdCG~~~~~--~-~~~~g~~w~~D~~~~~-~~~~~~~-----~~~~~~~~y~t~R~F~~~~g~~~cY~~~~~--~~g~yl 98 (531)
||||++.+. + ++.+||+|++|..|+. |.+..+. ......++|+|||+|| +|.|+||+||+. +++|||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence 799998763 2 3478999999998874 5544441 1223567899999999 577899999987 456999
Q ss_pred EEEEEecccCCCCC-----CCCcEEEEEcCeeEEEeecCCCCCccceEEEEEEEec-CCeEEEEEeecCCCC-CcEEeEE
Q 009603 99 VRIFFGLVTLTSFD-----HEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLR-DGTVSICFHSTGHGD-PAILSLE 171 (531)
Q Consensus 99 vRl~F~~~~y~~~~-----~~~~F~v~~~~~~w~~v~~~~~~~~~~~~~E~~~~~~-~~~l~v~f~~~~~~~-pfIsaiE 171 (531)
|||||+||+||+.+ +++.|||++|++.|.+|...- ....+++||+++++. ++.|+|||+|++.|. |||||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsaiE 157 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAIE 157 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEEE
Confidence 99999999999864 256799999999999998532 233679999888887 799999999999887 9999999
Q ss_pred EEEcCCCccccCCCCccceeEEEEeeecCCCCCCCCcCCCCCCCCCCCCcccCCCCCCCCCcccccccccee-cCCCCCC
Q 009603 172 ILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIK-QASKAPN 250 (531)
Q Consensus 172 l~~l~~~~y~~~~~~~~~~~l~~~~Rin~G~~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~-~~~~~~~ 250 (531)
|||||+++|+... ...+.+|++++|+||||... .+||++|++ ||+|.++. ....|..+++...+. .....++
T Consensus 158 l~~lp~~ly~~~~-~~~s~~L~~~~R~n~G~~~~--~iryp~D~~--dR~W~~~~--~~~~~~~ist~~~i~~~~~~~~~ 230 (347)
T PF12819_consen 158 LRPLPDSLYPDTD-ANSSQALETVYRLNVGGSSS--FIRYPDDTY--DRIWQPYS--SSPGWSNISTTSNININSSNNPY 230 (347)
T ss_pred EEECCccceeccc-cCCCceeEEEEeecCCCccc--ccCCCCCcc--eeeccccc--cCccccccccceeeecccCCccC
Confidence 9999999995221 13578999999999998753 289999998 99999763 135567777766665 3445677
Q ss_pred CChHHHHHHhhccCCCC--CCeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeccCCceeeecCCceee
Q 009603 251 FYPEALYQTALVSTDSQ--PDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTA 328 (531)
Q Consensus 251 ~~P~~Vy~TAr~~~~~~--~~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~ 328 (531)
.+|.+|||||+++.+.+ .+++|.+ ++++.+|+||||||||+......++|+|+|||||+.+.+++++.. .+....+
T Consensus 231 ~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~-~~~~~~~ 308 (347)
T PF12819_consen 231 DAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPY-LGADTVP 308 (347)
T ss_pred cChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCccc-ccCcceE
Confidence 89999999999976554 6789988 889999999999999987545566899999999999887554422 2223345
Q ss_pred EEEEEEeeecC-ceEEEEEccCCCc--hhhhhhHhhhhh
Q 009603 329 LVLNTTVAVNG-RTLTVTLHPKGGS--HAIINAIEVFEI 364 (531)
Q Consensus 329 ~~~~~~v~~~~-~~l~i~~~p~~~~--~p~lnalei~~~ 364 (531)
++.++.+.+.+ +.++|+++|+.++ +|+|||+|||++
T Consensus 309 ~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 309 YYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred eecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 66677776654 4689999997664 899999999975
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.85 E-value=1.6e-19 Score=198.88 Aligned_cols=89 Identities=30% Similarity=0.564 Sum_probs=82.0
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCC-CCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL-TALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~L~L~ 500 (531)
|+.|+|++|.+.|.+|..++.|++|+.|+|++|+++|.+|..+++|++|+.|+|++|+|+|.+|..++.+ .++..+++.
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 7789999999999999999999999999999999999999999999999999999999999999988764 567899999
Q ss_pred CCCCCCCCCh
Q 009603 501 GNTLSGRVPA 510 (531)
Q Consensus 501 ~N~l~g~iP~ 510 (531)
+|...+.+|.
T Consensus 524 ~N~~lc~~p~ 533 (623)
T PLN03150 524 DNAGLCGIPG 533 (623)
T ss_pred CCccccCCCC
Confidence 9987665653
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.81 E-value=1.1e-20 Score=174.70 Aligned_cols=141 Identities=27% Similarity=0.416 Sum_probs=84.2
Q ss_pred EeeecCCCCCCCCcCCCCCCCCCCCCcccCCCCCCCCCcccccc---cc-ceecCCCCCCCChHHHHHHhhccCCCCCCe
Q 009603 195 ATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRST---ES-SIKQASKAPNFYPEALYQTALVSTDSQPDL 270 (531)
Q Consensus 195 ~~Rin~G~~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t---~~-~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~l 270 (531)
++||||||... .+.. +..|.+|..+....+..... .. ............+..+|||+|++.. +|
T Consensus 2 ~~~IN~Gg~~~---~~~~------g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~---~f 69 (174)
T PF11721_consen 2 VLRINAGGPAY---TDSS------GIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS---SF 69 (174)
T ss_dssp EEEEEETSSSE---EETT------TEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS---SE
T ss_pred EEEEECCCCcc---cCCC------CCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC---ce
Confidence 68999999753 2333 55566665433232210000 00 0000111223346789999999755 39
Q ss_pred EEEEecCCCCcEEEEEEeeeccCCC----CCCceEEEEEEECCeeeccCCceeeecCCceeeEEEEE-EeeecCceEEEE
Q 009603 271 QYTMDVDPNRNYSIWLHFAEIDNTI----TGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNT-TVAVNGRTLTVT 345 (531)
Q Consensus 271 ~~~~~v~~~~~y~v~LhFaei~~~~----~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~-~v~~~~~~l~i~ 345 (531)
+|.+|+.++|.|.|+|||||++... ...++|+|||+|||++++++|||.+.+|+...+.++.+ .+.++++.|+|.
T Consensus 70 ~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~ 149 (174)
T PF11721_consen 70 SYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQ 149 (174)
T ss_dssp EEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETT
T ss_pred EEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEE
Confidence 9999977889999999999997643 34889999999999999999999999987654666665 788889999999
Q ss_pred Ec
Q 009603 346 LH 347 (531)
Q Consensus 346 ~~ 347 (531)
|.
T Consensus 150 f~ 151 (174)
T PF11721_consen 150 FV 151 (174)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.60 E-value=2.8e-15 Score=138.57 Aligned_cols=134 Identities=28% Similarity=0.423 Sum_probs=85.8
Q ss_pred EEEccCCCCCCcCCCCCceeeccCcccCCcccc----------cCC-C----CCCCCCcceeeccCCCCCCcceEEeeec
Q 009603 28 MRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN----------ATR-P----SFITPPLKTLRYFPLSEGPENCYIINRV 92 (531)
Q Consensus 28 i~IdCG~~~~~~~~~~g~~w~~D~~~~~~~~~~----------~~~-~----~~~~~~y~t~R~F~~~~g~~~cY~~~~~ 92 (531)
++||||++.- ++..|..|.+|..|.+|...- ... . ...+++|+|.|+-+. .+.|.||..
T Consensus 3 ~~IN~Gg~~~--~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~~ 76 (174)
T PF11721_consen 3 LRINAGGPAY--TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPVV 76 (174)
T ss_dssp EEEEETSSSE--EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE--
T ss_pred EEEECCCCcc--cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEecC
Confidence 7899999763 566899999999887654410 000 0 012358999999763 489999988
Q ss_pred CCceeEEEEEEecccCCC----C-CCCCcEEEEEcCeeEEEeecCCCCC------ccceEEEE-EEEecCCeEEEEEee-
Q 009603 93 PKGHYNVRIFFGLVTLTS----F-DHEPLFDISVEGTQIYSLKSGWSDH------DDRAFAEA-LVFLRDGTVSICFHS- 159 (531)
Q Consensus 93 ~~g~ylvRl~F~~~~y~~----~-~~~~~F~v~~~~~~w~~v~~~~~~~------~~~~~~E~-~~~~~~~~l~v~f~~- 159 (531)
++|.|.|||||.+..+.. . ...+.|||+++| .+|+.+|+.. ..++.+++ -+.++++.|.|+|..
T Consensus 77 ~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g---~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~ 153 (174)
T PF11721_consen 77 PNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNG---ETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWA 153 (174)
T ss_dssp S-EEEEEEEEEE-SSS--------SSSS-EEEEETT---EEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE
T ss_pred CCcEEEEEEEeccccccccccccCCCceEEEEEecc---eEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEec
Confidence 899999999999875543 1 346789999999 7899888751 23577777 456799999999985
Q ss_pred ----------cCCCCCcEEeE
Q 009603 160 ----------TGHGDPAILSL 170 (531)
Q Consensus 160 ----------~~~~~pfIsai 170 (531)
...+.|.||||
T Consensus 154 ~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 154 GKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp --SEEEEEEESSSSSSSEEEE
T ss_pred CCCcEEeeccccCCCcEEeeC
Confidence 44677899887
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.46 E-value=3.8e-13 Score=157.09 Aligned_cols=145 Identities=32% Similarity=0.562 Sum_probs=100.0
Q ss_pred CchHHHHHHHHHHhhcCCCCC--CCCCC-CCCCCCCCCCCccccccCCCCcceEEEEEEccCCCCcccCcccccCCCCCC
Q 009603 371 TLPEEVRALQVLKNSLDLPHR--FGWNG-DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQ 447 (531)
Q Consensus 371 ~~~~~~~aL~~~k~~~~~~~~--~~W~~-~~C~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~ 447 (531)
..++|..+|+++|+.+.++.. .+|+. +.| |.|.|+.|+.. .+++.|+|++|+++|.++..+..+++|+
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~----c~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSSADV----CLWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYIQ 96 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCC----CcCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCCC
Confidence 366899999999999865532 47853 344 36999999732 2488888888888888888888888888
Q ss_pred EEEccCCccCccCCcccc-CCCCCCEEecCCCcCCC----------------------CCcccccCCCCCCEEeccCCCC
Q 009603 448 SINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNG----------------------SIPESLGQLTALRRLNLNGNTL 504 (531)
Q Consensus 448 ~L~Ls~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g----------------------~iP~~l~~l~~L~~L~L~~N~l 504 (531)
.|+|++|+++|.+|..+. .+++|++|+|++|+++| .+|..++++++|++|+|++|.+
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 888888888888886654 66666666666666555 4444555555666666666666
Q ss_pred CCCCChhhhhhccccceeeec
Q 009603 505 SGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 505 ~g~iP~~~~~~~~~l~~l~l~ 525 (531)
.+.+|..+++ +.+|+.|+++
T Consensus 177 ~~~~p~~~~~-l~~L~~L~L~ 196 (968)
T PLN00113 177 VGKIPNSLTN-LTSLEFLTLA 196 (968)
T ss_pred cccCChhhhh-CcCCCeeecc
Confidence 5556655543 3345555554
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.08 E-value=1.6e-10 Score=135.11 Aligned_cols=105 Identities=31% Similarity=0.544 Sum_probs=90.0
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++.+|..+.++++|+.|+|++|.+.|.+|..+..|++|+.|+|++|.++|.+|..+..+++|+.|+|+
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 47788889998888888888888889999999999988888888888899999999999998888888888889999999
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|+++|.+|..+.. +..+..|++++
T Consensus 556 ~N~l~~~~p~~l~~-l~~L~~l~ls~ 580 (968)
T PLN00113 556 QNQLSGEIPKNLGN-VESLVQVNISH 580 (968)
T ss_pred CCcccccCChhHhc-CcccCEEeccC
Confidence 99998888888766 45677777764
No 8
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.91 E-value=5.5e-09 Score=107.41 Aligned_cols=156 Identities=24% Similarity=0.318 Sum_probs=99.8
Q ss_pred ecCCCCCCCCcCCCCCCCCCCCCcccCCCCCCCCCccccccccceecCCCCCCCChHHHHHHhhccCCCCCCeEEEEecC
Q 009603 198 LSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVD 277 (531)
Q Consensus 198 in~G~~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~l~~~~~v~ 277 (531)
||||+..... .|.|+.- +|.|.+|..+...+. +..|....+.....+...|+|||...... .-.|+|++.
T Consensus 1 IdCG~~~~~s--~y~D~~t--g~~~~~D~~~~~~g~-----~~~i~~~~~~~~~~~~~~y~taR~F~~g~-r~cY~l~~~ 70 (347)
T PF12819_consen 1 IDCGSSSNSS--SYVDDST--GRTWVSDDDFIDTGK-----SGNISSQPDSSSSDSSPPYQTARIFPEGS-RNCYTLPVT 70 (347)
T ss_pred CcCCCCCCCc--ccccCCC--CcEEeCCCCcccCCC-----ccccccccCCcCCccccccceEEEcCCCC-ccEEEeecc
Confidence 6999975422 2555443 899998875432211 11221001111124556899999976332 378999986
Q ss_pred --CCCcEEEEEEeeeccCCCC--C--CceEEEEEEECCeeeccCCceeeecCCceeeEEEEEEeeec-CceEEEEEccCC
Q 009603 278 --PNRNYSIWLHFAEIDNTIT--G--VGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVN-GRTLTVTLHPKG 350 (531)
Q Consensus 278 --~~~~y~v~LhFaei~~~~~--~--~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~~~-~~~l~i~~~p~~ 350 (531)
.+++|+|||||.-...... + ...-.|+++++...+.. +++.. . ...++++++.+.+. ++.|.|.|.|+.
T Consensus 71 ~~~~~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~t-V~~~~-~--~~~~~~~E~ii~v~~~~~l~vclv~~~ 146 (347)
T PF12819_consen 71 PPGGGKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWST-VNLSN-S--PSSPVVKEFIINVTWSDTLSVCLVPTG 146 (347)
T ss_pred CCCCceEEEEEEeccccccccccccccCCcceEEEECCceeEE-EEecC-C--CcceEEEEEEEEEcCCCcEEEEEEeCC
Confidence 4569999999997653211 0 12356999999876521 22211 1 11468889888888 688999999988
Q ss_pred Cc-hhhhhhHhhhhhhhh
Q 009603 351 GS-HAIINAIEVFEIIAV 367 (531)
Q Consensus 351 ~~-~p~lnalei~~~~~~ 367 (531)
.. .|+|||||+..+.+.
T Consensus 147 ~g~~pFIsaiEl~~lp~~ 164 (347)
T PF12819_consen 147 SGTFPFISAIELRPLPDS 164 (347)
T ss_pred CCCCCceeEEEEEECCcc
Confidence 44 499999999988653
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.79 E-value=4.1e-10 Score=100.38 Aligned_cols=88 Identities=32% Similarity=0.607 Sum_probs=57.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|.|++|.++ .+|+.+..|.+|+.|++++|++. .+|.++..|+.|+.|+++-|++. .+|..|+.++.|++|||..
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence 566667777766 45666677777777777777776 66667777777777777777766 6666777777777766666
Q ss_pred CCCCC-CCChhh
Q 009603 502 NTLSG-RVPAAL 512 (531)
Q Consensus 502 N~l~g-~iP~~~ 512 (531)
|+++. .+|..|
T Consensus 112 nnl~e~~lpgnf 123 (264)
T KOG0617|consen 112 NNLNENSLPGNF 123 (264)
T ss_pred cccccccCCcch
Confidence 66542 344433
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.61 E-value=2.6e-08 Score=75.32 Aligned_cols=61 Identities=36% Similarity=0.572 Sum_probs=45.3
Q ss_pred CCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCC
Q 009603 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL 504 (531)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l 504 (531)
++|+.|+|++|+++...+..|..+++|+.|++++|++....|..|.++++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3577778888877755456777788888888888888755556777888888888887764
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.60 E-value=3.5e-09 Score=94.48 Aligned_cols=91 Identities=36% Similarity=0.630 Sum_probs=57.8
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC-------------------
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG------------------- 482 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g------------------- 482 (531)
++.|++.+|.+. .+|..++.|++|+.|+++-|.+. .+|..|+.++.|++|||.+|+++.
T Consensus 58 levln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 58 LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG 135 (264)
T ss_pred hhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhc
Confidence 455666666655 45556666666666666666666 566666666666666666665542
Q ss_pred -----CCcccccCCCCCCEEeccCCCCCCCCChhhhhh
Q 009603 483 -----SIPESLGQLTALRRLNLNGNTLSGRVPAALGGR 515 (531)
Q Consensus 483 -----~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~ 515 (531)
.+|..+++|++|+.|.+..|.+. ++|.+++.+
T Consensus 136 dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~l 172 (264)
T KOG0617|consen 136 DNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDL 172 (264)
T ss_pred CCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHH
Confidence 45666667777777777777666 677766654
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.54 E-value=1.1e-08 Score=106.69 Aligned_cols=103 Identities=23% Similarity=0.218 Sum_probs=87.8
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|+.|+++..-...+-+|++|+.|+||.|.+...-++.+..+++|++|+|++|+++.--+..|..|.+|++|+|++
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 77899999999877777888899999999999999888888888999999999999999966667788888889999999
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+++ .|-+..+..+.+|..|||.
T Consensus 351 Nsi~-~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 351 NSID-HLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred cchH-HHHhhHHHHhhhhhhhcCc
Confidence 9888 6777766777788888876
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=1.6e-07 Score=70.88 Aligned_cols=59 Identities=31% Similarity=0.548 Sum_probs=55.1
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 480 (531)
++.|+|++|.++...+..+.++++|+.|+|++|.+....|..|..|++|+.|++++|+|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 78899999999988778999999999999999999977788999999999999999985
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.39 E-value=2.4e-08 Score=104.74 Aligned_cols=101 Identities=28% Similarity=0.451 Sum_probs=90.7
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCc-cCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
++++|+|+.|.|+ .+|..+++|++|+.|.+.+|+++. -||+.+++|..|+++.+++|.+. .+|+.+..+.+|+.|.|
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence 4678889999887 679999999999999999999874 48999999999999999999999 89999999999999999
Q ss_pred cCCCCCCCCChhhhhhccccceeeec
Q 009603 500 NGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 500 ~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+.|++- .+|+.+ .++..+..||+.
T Consensus 347 ~~NrLi-TLPeaI-HlL~~l~vLDlr 370 (1255)
T KOG0444|consen 347 DHNRLI-TLPEAI-HLLPDLKVLDLR 370 (1255)
T ss_pred ccccee-echhhh-hhcCCcceeecc
Confidence 999998 899988 677788888886
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.33 E-value=1.5e-07 Score=98.33 Aligned_cols=104 Identities=22% Similarity=0.273 Sum_probs=95.4
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|.|..|+++..-...|-.|.++++|+|+.|+++..-...+.+|++|+.|+||+|.+....++.+...++|++|+|++
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence 67788999999988788899999999999999999977778889999999999999999988899999999999999999
Q ss_pred CCCCCCCChhhhhhccccceeeecc
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|+++ .+|++-...+..|+.|+|++
T Consensus 327 N~i~-~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 327 NRIT-RLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred cccc-cCChhHHHHHHHhhhhcccc
Confidence 9999 88888778888899999884
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.33 E-value=9.2e-08 Score=100.42 Aligned_cols=102 Identities=29% Similarity=0.437 Sum_probs=89.4
Q ss_pred EEEEEEccCCCCcc-cCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCccc-ccCCCCCCEEe
Q 009603 421 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLN 498 (531)
Q Consensus 421 ~l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~ 498 (531)
+++++.+..|+|.. -+|+.|..|..|+.||||+|++. ++|..+..-+++-+|+||+|+|. .||.. +-+|..|..|+
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhc
Confidence 47788899999864 47889999999999999999999 99999999999999999999999 88864 56899999999
Q ss_pred ccCCCCCCCCChhhhhhccccceeeecc
Q 009603 499 LNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 499 L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
||+|++. .+|+.+.. +.+|+.|+|+.
T Consensus 157 LS~NrLe-~LPPQ~RR-L~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRR-LSMLQTLKLSN 182 (1255)
T ss_pred cccchhh-hcCHHHHH-HhhhhhhhcCC
Confidence 9999999 89998855 56788887764
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.29 E-value=7.3e-07 Score=82.14 Aligned_cols=103 Identities=26% Similarity=0.314 Sum_probs=45.0
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccc-cCCCCCCEEecCCCcCCCCC-cccccCCCCCCEEe
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLN 498 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~ 498 (531)
.++.|+|++|.|+.. +.+..|+.|+.|+|++|.++ .+.+.+ ..+++|+.|+|++|++...- -..+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 43 KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp T--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 377888888888743 24677888888888888888 454444 35788888888888886311 13566788888888
Q ss_pred ccCCCCCCCCCh---hhhhhccccceeeeccc
Q 009603 499 LNGNTLSGRVPA---ALGGRLLHRASFKYVWA 527 (531)
Q Consensus 499 L~~N~l~g~iP~---~~~~~~~~l~~l~l~~~ 527 (531)
|.+|.++ ..+. .+-..+++++.||..-+
T Consensus 120 L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 120 LEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TT-GGG-GSTTHHHHHHHH-TT-SEETTEET
T ss_pred ccCCccc-chhhHHHHHHHHcChhheeCCEEc
Confidence 8888887 3343 23455566777765533
No 18
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=98.25 E-value=1e-06 Score=84.24 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=81.0
Q ss_pred hHHHHHHhhccCCCCCCeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEEC-CeeeccCCceeeecCCceee--E
Q 009603 253 PEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILIN-GDIAFQGVDVVKMSGDRYTA--L 329 (531)
Q Consensus 253 P~~Vy~TAr~~~~~~~~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~in-g~~~~~~~di~~~~~~~~~~--~ 329 (531)
-..+|||+|+.... +.|..|++..|.|-+.|.|||+++ +..+..+|||-+| +..+++++|++...|++..+ .
T Consensus 107 d~ily~ter~neet---Fgyd~pik~dgdyalvlkfaevyF--~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe 181 (355)
T KOG3593|consen 107 DIILYQTERYNEET---FGYDVPIKEDGDYALVLKFAEVYF--KTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDE 181 (355)
T ss_pred hhhhhhhcccchhh---hcccccccCCCceehhhhHHHHHH--HhhhhhheeeeeccceeEEeccchhhhcCCCcccccc
Confidence 44689999996443 778888888899999999999975 5678899999999 99999999999887743222 1
Q ss_pred EEEEE-----------ee-ecCceEEEEEccCCCchhhhhhHhhhhh
Q 009603 330 VLNTT-----------VA-VNGRTLTVTLHPKGGSHAIINAIEVFEI 364 (531)
Q Consensus 330 ~~~~~-----------v~-~~~~~l~i~~~p~~~~~p~lnalei~~~ 364 (531)
++... +. ...|+++|+|.+..-.+|.+||..|+..
T Consensus 182 ~i~~~i~~gkls~~gess~~t~gkl~le~~kg~ldnpk~~a~aIl~g 228 (355)
T KOG3593|consen 182 IIPCLIGQGKLSVCGESSISTLGKLNLEFLKGVLDNPKDCARAILVG 228 (355)
T ss_pred eEEEEEcCceEEEEeeeEEeecceEEEEeecccCCChhhhhHHHhhc
Confidence 11111 11 2236789999887766799999988854
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.23 E-value=1.1e-07 Score=95.26 Aligned_cols=97 Identities=30% Similarity=0.473 Sum_probs=72.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCcccc-CCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
++.|+|..|.+. .+| +|.+++.|..|+++.|++. .+|.+.. +|.+|.+|||..|++. +.|+++..+.+|+.|||+
T Consensus 208 L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 208 LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLS 283 (565)
T ss_pred hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhccc
Confidence 344556666655 333 5666666666666666666 5665554 7889999999999998 899999999999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|.++ .+|.+++++ |++.|.++
T Consensus 284 NN~is-~Lp~sLgnl--hL~~L~le 305 (565)
T KOG0472|consen 284 NNDIS-SLPYSLGNL--HLKFLALE 305 (565)
T ss_pred CCccc-cCCcccccc--eeeehhhc
Confidence 99999 788889887 77777665
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.22 E-value=2.1e-07 Score=101.91 Aligned_cols=100 Identities=28% Similarity=0.407 Sum_probs=87.7
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
+|..|+|++|.|.......+.+|..|+.|+||+|.|+ .+|..+.+|+.|++|...+|++. .+| ++.++++|+.+||+
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence 4889999999998776778999999999999999999 89999999999999999999999 888 79999999999999
Q ss_pred CCCCCC-CCChhhhhhc-cccceeeecc
Q 009603 501 GNTLSG-RVPAALGGRL-LHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g-~iP~~~~~~~-~~l~~l~l~~ 526 (531)
.|+|+- .+|. ..+ .+|++|||+.
T Consensus 461 ~N~L~~~~l~~---~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 461 CNNLSEVTLPE---ALPSPNLKYLDLSG 485 (1081)
T ss_pred cchhhhhhhhh---hCCCcccceeeccC
Confidence 999973 3343 333 6788999873
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.12 E-value=3e-06 Score=78.08 Aligned_cols=98 Identities=28% Similarity=0.395 Sum_probs=35.8
Q ss_pred EEEEEEccCCCCcccCccccc-CCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccc-cCCCCCCEEe
Q 009603 421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLN 498 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~ 498 (531)
.+++|+|++|.|+-. ..++ .|.+|+.|+|++|.++ .++ .+..|+.|+.|+|++|+++ .+.+.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 367899999998743 3465 5889999999999999 554 5788999999999999999 565545 4689999999
Q ss_pred ccCCCCCCCCCh--hhhhhccccceeeec
Q 009603 499 LNGNTLSGRVPA--ALGGRLLHRASFKYV 525 (531)
Q Consensus 499 L~~N~l~g~iP~--~~~~~~~~l~~l~l~ 525 (531)
|++|++. .+-+ .+ ..+.+|..|++.
T Consensus 95 L~~N~I~-~l~~l~~L-~~l~~L~~L~L~ 121 (175)
T PF14580_consen 95 LSNNKIS-DLNELEPL-SSLPKLRVLSLE 121 (175)
T ss_dssp -TTS----SCCCCGGG-GG-TT--EEE-T
T ss_pred CcCCcCC-ChHHhHHH-HcCCCcceeecc
Confidence 9999997 3322 23 235567777765
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.09 E-value=8.1e-07 Score=89.24 Aligned_cols=86 Identities=40% Similarity=0.574 Sum_probs=61.5
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccC----------------------ccCC-ccccCCCCCCEEecCCC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR----------------------GAIP-SSLGTIASLEVLDLSYN 478 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~----------------------g~ip-~~l~~l~~L~~L~Ls~N 478 (531)
++-|+|++|-+. .+|.+++.+..|+.|+|+.|.|. |.++ ..+++|.+|..|||.+|
T Consensus 437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN 515 (565)
T KOG0472|consen 437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN 515 (565)
T ss_pred ceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC
Confidence 566777766655 56777777777777777777664 1223 23677788888888888
Q ss_pred cCCCCCcccccCCCCCCEEeccCCCCCCCCChh
Q 009603 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAA 511 (531)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~ 511 (531)
.+. .+|..+++|++|++|.|++|.|. .|..
T Consensus 516 dlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 516 DLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred chh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 887 78888888888888888888887 5543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.97 E-value=1.3e-06 Score=87.60 Aligned_cols=106 Identities=26% Similarity=0.346 Sum_probs=83.2
Q ss_pred cccccCCCC-----cceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCC-CcCCC
Q 009603 409 ADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY-NFFNG 482 (531)
Q Consensus 409 v~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g 482 (531)
|.|+..+.. .+...++|.|..|+|+-..+..|..+.+|+.||||+|+|+..-|+.|..|.+|..|-+-+ |+|+
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~- 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT- 129 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence 678754432 123578999999999988888999999999999999999988899999999988876554 9998
Q ss_pred CCc-ccccCCCCCCEEeccCCCCCCCCChhhhhhc
Q 009603 483 SIP-ESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516 (531)
Q Consensus 483 ~iP-~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~ 516 (531)
.+| ..|++|.+|+.|.+.-|++. .++......+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL 163 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDL 163 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHh
Confidence 555 57888888888888888887 4544433333
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.93 E-value=7.9e-05 Score=83.80 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=25.8
Q ss_pred hccCCchHHHHHHHHHHhhcCCCCC-----CCCCC--CCCCC
Q 009603 367 VESKTLPEEVRALQVLKNSLDLPHR-----FGWNG--DPCVP 401 (531)
Q Consensus 367 ~~~~~~~~~~~aL~~~k~~~~~~~~-----~~W~~--~~C~~ 401 (531)
...++.++++..+.++.+.+..|.. ++|++ +.|.-
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~ 97 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCIL 97 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCccccc
Confidence 4567788999999999998877652 35864 57743
No 25
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=1.4e-06 Score=75.45 Aligned_cols=89 Identities=24% Similarity=0.421 Sum_probs=77.0
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
+++.++|++|.+....+.--.+.+.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|+-+..|.+|..|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 5888999999998665555555678999999999999 89999999999999999999999 788888889999999999
Q ss_pred CCCCCCCCChhh
Q 009603 501 GNTLSGRVPAAL 512 (531)
Q Consensus 501 ~N~l~g~iP~~~ 512 (531)
+|.+. +||-.+
T Consensus 132 ~na~~-eid~dl 142 (177)
T KOG4579|consen 132 ENARA-EIDVDL 142 (177)
T ss_pred CCccc-cCcHHH
Confidence 99987 787653
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=9.5e-06 Score=56.75 Aligned_cols=36 Identities=44% Similarity=0.635 Sum_probs=20.2
Q ss_pred CCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCC
Q 009603 469 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505 (531)
Q Consensus 469 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 505 (531)
+|++|+|++|+|+ .+|..+++|++|+.|+|++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 45555566666666666666655
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.91 E-value=9.5e-06 Score=90.83 Aligned_cols=85 Identities=31% Similarity=0.386 Sum_probs=68.1
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.|+.|+|++|.|++ +|.. .++|+.|+|++|.|+ .+|.. +.+|+.|+|++|+|+ .+|..+.++++|+.|+|+
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 36778888888875 4432 357888899999988 46754 346788999999998 899999999999999999
Q ss_pred CCCCCCCCChhhhh
Q 009603 501 GNTLSGRVPAALGG 514 (531)
Q Consensus 501 ~N~l~g~iP~~~~~ 514 (531)
+|+|+|.+|..+..
T Consensus 454 ~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 454 GNPLSERTLQALRE 467 (788)
T ss_pred CCCCCchHHHHHHH
Confidence 99999998887633
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.85 E-value=6.1e-06 Score=83.62 Aligned_cols=106 Identities=27% Similarity=0.372 Sum_probs=71.9
Q ss_pred EEEEEEccCCCCcc----cCcccccCC-CCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCC----Cccc
Q 009603 421 VIDGLGLDNQGLRG----FLPNGISKL-RHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPES 487 (531)
Q Consensus 421 ~l~~L~L~~n~l~g----~~p~~l~~L-~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~ 487 (531)
.++.|+|++|.+.+ .+...+..+ ++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 37888888888773 333455666 7888888888888743 334566677888888888888752 3344
Q ss_pred ccCCCCCCEEeccCCCCCCCCChhhhhh---ccccceeeecc
Q 009603 488 LGQLTALRRLNLNGNTLSGRVPAALGGR---LLHRASFKYVW 526 (531)
Q Consensus 488 l~~l~~L~~L~L~~N~l~g~iP~~~~~~---~~~l~~l~l~~ 526 (531)
+..+++|++|+|++|.+++.-...+... ..++..|+++.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 5566788888888888874433333322 34577777775
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.85 E-value=1.6e-06 Score=90.66 Aligned_cols=98 Identities=31% Similarity=0.483 Sum_probs=84.6
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
|..|-+++|+++ .+|..++.+.+|..||.+.|.+. .+|..++.|.+|+.|.+..|++. .+|+++..| .|..||++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence 667888888886 67888888899999999999998 88999999999999999999999 888888854 589999999
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+++ .||-.|.+ +.+|..|.|.
T Consensus 221 Nkis-~iPv~fr~-m~~Lq~l~Le 242 (722)
T KOG0532|consen 221 NKIS-YLPVDFRK-MRHLQVLQLE 242 (722)
T ss_pred Ccee-ecchhhhh-hhhheeeeec
Confidence 9999 89998865 5678877776
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.85 E-value=6.8e-06 Score=83.28 Aligned_cols=105 Identities=22% Similarity=0.332 Sum_probs=66.8
Q ss_pred EEEEEEccCCCCccc----CcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCCCccccc---
Q 009603 421 VIDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPESLG--- 489 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~--- 489 (531)
.++.|+|++|++++. ++..+..++.|+.|+|++|.+++. ++..+..+++|+.|++++|.+++.....+.
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~ 245 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL 245 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence 477888888888742 344455667888888888887643 334566778888888888888753222222
Q ss_pred --CCCCCCEEeccCCCCCC----CCChhhhhhccccceeeecc
Q 009603 490 --QLTALRRLNLNGNTLSG----RVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 490 --~l~~L~~L~L~~N~l~g----~iP~~~~~~~~~l~~l~l~~ 526 (531)
..++|+.|++++|.++. .+...+... .++..++++.
T Consensus 246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~ 287 (319)
T cd00116 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRG 287 (319)
T ss_pred hccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCC
Confidence 23678888888888762 222222222 4566776653
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.82 E-value=3.9e-05 Score=91.30 Aligned_cols=101 Identities=24% Similarity=0.279 Sum_probs=61.8
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+. .++..+..+++|+.|+|+++..-+.+| .+..+++|+.|+|++|.....+|..++++++|+.|+|++
T Consensus 613 L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 613 LVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred CcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 566677766665 345556666777777776655444555 356666777777766655556666666667777777766
Q ss_pred CCCCCCCChhhhhhccccceeeecc
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|...+.+|..+ .+.+|..|++..
T Consensus 691 c~~L~~Lp~~i--~l~sL~~L~Lsg 713 (1153)
T PLN03210 691 CENLEILPTGI--NLKSLYRLNLSG 713 (1153)
T ss_pred CCCcCccCCcC--CCCCCCEEeCCC
Confidence 54444666544 244555555543
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.81 E-value=6.2e-06 Score=90.79 Aligned_cols=91 Identities=33% Similarity=0.515 Sum_probs=82.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.+..|+|++|.++ ..|..++.+.+|+.|+++.|.+. ..|.+..++.+|++|+|.+|++. .+|.++..+.+|+.|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4889999999876 67888999999999999999999 88899999999999999999999 999999999999999999
Q ss_pred CCCCCCCCChhhhhh
Q 009603 501 GNTLSGRVPAALGGR 515 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~ 515 (531)
.|.|. .+|..+..+
T Consensus 123 ~N~f~-~~Pl~i~~l 136 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVL 136 (1081)
T ss_pred hhccC-CCchhHHhh
Confidence 99998 888766543
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.77 E-value=4.1e-05 Score=86.05 Aligned_cols=81 Identities=32% Similarity=0.486 Sum_probs=44.3
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
|+.|+|++|+|+ .+|..+. .+|+.|+|++|.+. .+|..+. ++|+.|+|++|+|+ .+|..+. .+|+.|+|++
T Consensus 222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence 444555555544 2333222 24555555555555 4554443 35666777777666 4565443 3677777777
Q ss_pred CCCCCCCChhh
Q 009603 502 NTLSGRVPAAL 512 (531)
Q Consensus 502 N~l~g~iP~~~ 512 (531)
|+|+ .+|..+
T Consensus 293 N~Lt-~LP~~l 302 (754)
T PRK15370 293 NSIR-TLPAHL 302 (754)
T ss_pred Cccc-cCcccc
Confidence 7776 455443
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.6e-05 Score=54.55 Aligned_cols=37 Identities=35% Similarity=0.625 Sum_probs=30.1
Q ss_pred CCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCC
Q 009603 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481 (531)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 481 (531)
++|+.|+|++|+++ .+|+.+++|++|+.|+|++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46888999999998 67777889999999999999887
No 35
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.67 E-value=0.0001 Score=87.85 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=63.7
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC------------------
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG------------------ 482 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g------------------ 482 (531)
.|+.|+|++|...+.+|..+++|++|+.|+|++|..-+.+|..+ .+++|+.|+|++|....
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 47889999998888899999999999999999876555777654 45555555555543332
Q ss_pred --CCcccccCCCCCCEEeccC-CCCCCCCChhhhhhccccceeeec
Q 009603 483 --SIPESLGQLTALRRLNLNG-NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 483 --~iP~~l~~l~~L~~L~L~~-N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
.+|..+..+++|+.|+|++ |++. .+|..+.. +.++..+++.
T Consensus 858 i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~-L~~L~~L~l~ 901 (1153)
T PLN03210 858 IEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISK-LKHLETVDFS 901 (1153)
T ss_pred CccChHHHhcCCCCCEEECCCCCCcC-ccCccccc-ccCCCeeecC
Confidence 3444555555555555554 3333 34444332 2344444444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.65 E-value=1.1e-05 Score=78.45 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=56.6
Q ss_pred eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
+.++.|+|+.|++... ..+..|++|+.||||+|.++ .+-..-.+|.+++.|.|+.|.+. .+ ..+++|-+|..||+
T Consensus 307 Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDL 381 (490)
T ss_pred cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccc
Confidence 4567778888777632 23667777888888888777 44444456777778888887765 22 34667778889999
Q ss_pred cCCCCC
Q 009603 500 NGNTLS 505 (531)
Q Consensus 500 ~~N~l~ 505 (531)
++|++.
T Consensus 382 ~~N~Ie 387 (490)
T KOG1259|consen 382 SSNQIE 387 (490)
T ss_pred cccchh
Confidence 999885
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.63 E-value=7.4e-05 Score=83.85 Aligned_cols=72 Identities=25% Similarity=0.321 Sum_probs=48.5
Q ss_pred CCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceee
Q 009603 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFK 523 (531)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~ 523 (531)
.+|+.|+|++|.|+ .+|.. .++|+.|+|++|+|+ .+|... .+|+.|+|++|+|+ .||..++++ .++..|+
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L-~~L~~Ld 451 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHL-SSETTVN 451 (788)
T ss_pred cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhc-cCCCeEE
Confidence 35666777777776 35533 246777777777777 466532 45777888888888 788887654 4677777
Q ss_pred ec
Q 009603 524 YV 525 (531)
Q Consensus 524 l~ 525 (531)
++
T Consensus 452 Ls 453 (788)
T PRK15387 452 LE 453 (788)
T ss_pred CC
Confidence 75
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=5.1e-06 Score=71.94 Aligned_cols=98 Identities=28% Similarity=0.397 Sum_probs=77.0
Q ss_pred EEEEEccCCCCcccCc---ccccCCCCCCEEEccCCccCccCCccccC-CCCCCEEecCCCcCCCCCcccccCCCCCCEE
Q 009603 422 IDGLGLDNQGLRGFLP---NGISKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFNGSIPESLGQLTALRRL 497 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p---~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 497 (531)
+..++|+++.|- .++ ..+....+|+.++|++|.|. .+|+.|.. .+.++.|+|++|+++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 345777777764 333 35666778888899999999 66766654 458999999999999 999999999999999
Q ss_pred eccCCCCCCCCChhhhhhccccceeee
Q 009603 498 NLNGNTLSGRVPAALGGRLLHRASFKY 524 (531)
Q Consensus 498 ~L~~N~l~g~iP~~~~~~~~~l~~l~l 524 (531)
++..|.|. ..|.-+.. +.++-.|+.
T Consensus 106 Nl~~N~l~-~~p~vi~~-L~~l~~Lds 130 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAP-LIKLDMLDS 130 (177)
T ss_pred ccccCccc-cchHHHHH-HHhHHHhcC
Confidence 99999999 78887776 444444443
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.53 E-value=4.8e-05 Score=79.85 Aligned_cols=86 Identities=36% Similarity=0.649 Sum_probs=52.7
Q ss_pred EEEEEccCCCCcccCcccccCCC-CCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLR-HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
++.|++.+|.+. .+++....+. +|+.|++++|.+. .+|..++.++.|+.|+++.|+++ .+|...+.++.|+.|+++
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 556666666665 4444555553 6666666666666 55555666666666666666666 555555556666666666
Q ss_pred CCCCCCCCChh
Q 009603 501 GNTLSGRVPAA 511 (531)
Q Consensus 501 ~N~l~g~iP~~ 511 (531)
+|+++ .+|..
T Consensus 195 ~N~i~-~l~~~ 204 (394)
T COG4886 195 GNKIS-DLPPE 204 (394)
T ss_pred CCccc-cCchh
Confidence 66666 56654
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.50 E-value=1.4e-05 Score=83.74 Aligned_cols=91 Identities=24% Similarity=0.425 Sum_probs=81.2
Q ss_pred eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
..+..|+.+.|.+. .+|+.++.|.+|+.|++..|++. .+|.++..| .|..||+|.|+++ .||..|.+|..|++|-|
T Consensus 166 ~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence 34667899999987 67889999999999999999999 889899855 5999999999999 99999999999999999
Q ss_pred cCCCCCCCCChhhhhh
Q 009603 500 NGNTLSGRVPAALGGR 515 (531)
Q Consensus 500 ~~N~l~g~iP~~~~~~ 515 (531)
.+|.|. +-|..+...
T Consensus 242 enNPLq-SPPAqIC~k 256 (722)
T KOG0532|consen 242 ENNPLQ-SPPAQICEK 256 (722)
T ss_pred ccCCCC-CChHHHHhc
Confidence 999999 788877643
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.46 E-value=3.7e-05 Score=77.42 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=74.8
Q ss_pred eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
.+++.|+|++|.+++.-+..|.++.+|+.|.|..|++...--..|..+..|+.|+|.+|+|+-.-|.+|..+.+|..|+|
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 46889999999999888888999999999999999988555667888999999999999999888888999999999999
Q ss_pred cCCCCC
Q 009603 500 NGNTLS 505 (531)
Q Consensus 500 ~~N~l~ 505 (531)
-.|.|.
T Consensus 354 ~~Np~~ 359 (498)
T KOG4237|consen 354 LSNPFN 359 (498)
T ss_pred ccCccc
Confidence 888774
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.37 E-value=8.5e-05 Score=84.92 Aligned_cols=105 Identities=28% Similarity=0.322 Sum_probs=84.0
Q ss_pred EEEEEEccCCC--CcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEe
Q 009603 421 VIDGLGLDNQG--LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498 (531)
Q Consensus 421 ~l~~L~L~~n~--l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 498 (531)
.+++|-+..|. +.-.....|..|+.|+.|||++|.=-+.+|.+++.|-+|++|+|+...+. .+|..+++|.+|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 47788888886 33333344778999999999998888899999999999999999999999 8999999999999999
Q ss_pred ccCCCCCCCCChhhhhhccccceeeeccc
Q 009603 499 LNGNTLSGRVPAALGGRLLHRASFKYVWA 527 (531)
Q Consensus 499 L~~N~l~g~iP~~~~~~~~~l~~l~l~~~ 527 (531)
+..+.....+|. +...+.+|+.|.+-+-
T Consensus 625 l~~~~~l~~~~~-i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPG-ILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccc-hhhhcccccEEEeecc
Confidence 998876655644 4444667787777543
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.09 E-value=0.00014 Score=70.81 Aligned_cols=80 Identities=31% Similarity=0.394 Sum_probs=34.3
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc--ccccCCCCCCEEec
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRLNL 499 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~L 499 (531)
++.|+|++|.++. +...-.+|-+++.|.|+.|.+. . -..+++|=+|..||+++|++. .+- ..+++|+.|++|.|
T Consensus 331 L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 331 LQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred ceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhh
Confidence 4445555554431 1122223444444555555443 1 113344444555555555444 111 23444555555555
Q ss_pred cCCCCC
Q 009603 500 NGNTLS 505 (531)
Q Consensus 500 ~~N~l~ 505 (531)
-+|.+.
T Consensus 407 ~~NPl~ 412 (490)
T KOG1259|consen 407 TGNPLA 412 (490)
T ss_pred cCCCcc
Confidence 555554
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.02 E-value=0.00083 Score=46.64 Aligned_cols=35 Identities=43% Similarity=0.935 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhhcCC-CC--CCCCCC----CCCCCCCCCCCccccc
Q 009603 373 PEEVRALQVLKNSLDL-PH--RFGWNG----DPCVPQQHPWSGADCQ 412 (531)
Q Consensus 373 ~~~~~aL~~~k~~~~~-~~--~~~W~~----~~C~~~~~~w~gv~C~ 412 (531)
++|+++|++||+.+.. +. ..+|+. +|| .|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence 5799999999999984 32 358974 455 69999995
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.92 E-value=0.00028 Score=74.05 Aligned_cols=79 Identities=30% Similarity=0.530 Sum_probs=47.4
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+++.|.+. .+|..+..++.|+.|+++.|+++ .+|...+.++.|+.|++++|+++ .+|..+..+..|+.|.+++
T Consensus 142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218 (394)
T ss_pred cccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence 556666666665 33345666666666666666666 55555555666666666666666 5665544455556666655
Q ss_pred CC
Q 009603 502 NT 503 (531)
Q Consensus 502 N~ 503 (531)
|.
T Consensus 219 N~ 220 (394)
T COG4886 219 NS 220 (394)
T ss_pred Cc
Confidence 53
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.80 E-value=9.2e-05 Score=79.80 Aligned_cols=81 Identities=26% Similarity=0.433 Sum_probs=65.1
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc-cccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
.++.|+|++|++...- .+..|++|++|||+.|.|. .+|. ....|. |+.|.|++|.++ .+ ..+.+|.+|+.|||
T Consensus 188 ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccch
Confidence 4788999999987542 7888999999999999998 6663 233455 999999999887 33 34778999999999
Q ss_pred cCCCCCCC
Q 009603 500 NGNTLSGR 507 (531)
Q Consensus 500 ~~N~l~g~ 507 (531)
+.|.|++.
T Consensus 262 syNll~~h 269 (1096)
T KOG1859|consen 262 SYNLLSEH 269 (1096)
T ss_pred hHhhhhcc
Confidence 99998854
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.79 E-value=0.00067 Score=77.70 Aligned_cols=83 Identities=33% Similarity=0.406 Sum_probs=74.4
Q ss_pred eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
..+..|||++|.=-+.+|..+++|-+|++|+|+...+. .+|..+++|..|.+|++..+.-...+|..+..|++|++|.|
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 45889999998877899999999999999999999999 99999999999999999998877677777777999999998
Q ss_pred cCCC
Q 009603 500 NGNT 503 (531)
Q Consensus 500 ~~N~ 503 (531)
-.-.
T Consensus 650 ~~s~ 653 (889)
T KOG4658|consen 650 PRSA 653 (889)
T ss_pred eccc
Confidence 6544
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.0026 Score=61.25 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=71.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCC--ccCccCCccccCCCCCCEEecCCCcCCCCCccc---ccCCCCCCE
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN--SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES---LGQLTALRR 496 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N--~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~ 496 (531)
++.|++.+.+++-. ..+..|++|+.|.+|.| +.++.++.....+++|++|+|+.|++. ++.. +..+.+|..
T Consensus 45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhh
Confidence 44555555555422 34667889999999999 777788777778899999999999987 2333 456677889
Q ss_pred EeccCCCCCCCCC---hhhhhhccccceeeec
Q 009603 497 LNLNGNTLSGRVP---AALGGRLLHRASFKYV 525 (531)
Q Consensus 497 L~L~~N~l~g~iP---~~~~~~~~~l~~l~l~ 525 (531)
|++.+|.-+. +- ..++.++.+|++|+--
T Consensus 121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence 9999887764 32 3467777777777643
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.30 E-value=0.00029 Score=76.11 Aligned_cols=94 Identities=26% Similarity=0.406 Sum_probs=69.2
Q ss_pred EEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCccc-ccCCCCCCEEeccCCC
Q 009603 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLNLNGNT 503 (531)
Q Consensus 425 L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~L~~N~ 503 (531)
.+.+.|.|. .+..++.-|+.|+.|||++|++. .+. .+..|++|+.|||+.|.|. .+|.. ...+ +|+.|.|.+|.
T Consensus 169 a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 169 ASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNA 243 (1096)
T ss_pred hhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccH
Confidence 344445444 34556777899999999999998 333 7889999999999999999 77753 2233 39999999999
Q ss_pred CCCCCChhhhhhccccceeeecc
Q 009603 504 LSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 504 l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
++ .+ .++.+ +.+|..||++|
T Consensus 244 l~-tL-~gie~-LksL~~LDlsy 263 (1096)
T KOG1859|consen 244 LT-TL-RGIEN-LKSLYGLDLSY 263 (1096)
T ss_pred HH-hh-hhHHh-hhhhhccchhH
Confidence 88 44 23433 45677777774
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.03 E-value=0.0035 Score=66.39 Aligned_cols=83 Identities=30% Similarity=0.388 Sum_probs=57.1
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|..|.|.+.. ..+..|++|+.|+|+.|.++... .+..|+.|+.|++++|.++ .++ .+..+.+|+.|++++
T Consensus 97 l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSY 171 (414)
T ss_pred eeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hcc-CCccchhhhcccCCc
Confidence 677888888877442 22667788888888888887333 4556667888888888877 333 345577788888888
Q ss_pred CCCCCCCCh
Q 009603 502 NTLSGRVPA 510 (531)
Q Consensus 502 N~l~g~iP~ 510 (531)
|++. .++.
T Consensus 172 n~i~-~ie~ 179 (414)
T KOG0531|consen 172 NRIV-DIEN 179 (414)
T ss_pred chhh-hhhh
Confidence 8877 4443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.0024 Score=62.51 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=42.1
Q ss_pred CCCccccccCCCCcceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccC-CccccCCCCCCEEecCCCc
Q 009603 405 PWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLGTIASLEVLDLSYNF 479 (531)
Q Consensus 405 ~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~L~Ls~N~ 479 (531)
.|.-|.|-... .++++.|+|+.|.|...|...-..+.+|+.|-|.+..+...- ...+..++.++.|++|.|+
T Consensus 85 dWseI~~ile~---lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 85 DWSEIGAILEQ---LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred cHHHHHHHHhc---CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 37766664322 235777777777776444322234556777777666665432 2345566667777777663
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.78 E-value=0.0029 Score=66.93 Aligned_cols=98 Identities=32% Similarity=0.468 Sum_probs=72.4
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
+..+.+..|.+.. +-..+..+.+|+.|+|..|.+. .+...+..|.+|++|+|++|.|+...+ +..+..|+.|++++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheecc
Confidence 4455566666653 3345788999999999999999 555447889999999999999994333 56777899999999
Q ss_pred CCCCCCCChhhhhhccccceeeecc
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|.++ .++. +.. +..+..+++.+
T Consensus 150 N~i~-~~~~-~~~-l~~L~~l~l~~ 171 (414)
T KOG0531|consen 150 NLIS-DISG-LES-LKSLKLLDLSY 171 (414)
T ss_pred Ccch-hccC-Ccc-chhhhcccCCc
Confidence 9998 5543 222 45566666654
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0019 Score=66.22 Aligned_cols=104 Identities=21% Similarity=0.206 Sum_probs=67.7
Q ss_pred EEEEEEccCCCCcc-cCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc--ccccCCCCCCEE
Q 009603 421 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRL 497 (531)
Q Consensus 421 ~l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L 497 (531)
++..|.|+.|+|+- .+...+..+++|..|+|..|..-+.--....-+..|+.|||++|++- ..+ ...+.|+.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 57788888888872 23344566788888888888532222333445678889999988887 455 356778888888
Q ss_pred eccCCCCCCC-CChh----hhhhccccceeeec
Q 009603 498 NLNGNTLSGR-VPAA----LGGRLLHRASFKYV 525 (531)
Q Consensus 498 ~L~~N~l~g~-iP~~----~~~~~~~l~~l~l~ 525 (531)
+++.+.+... +|+. .......+++|+..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecc
Confidence 8888887621 2322 12334456666654
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.42 E-value=0.018 Score=53.52 Aligned_cols=100 Identities=21% Similarity=0.303 Sum_probs=70.2
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc--ccccCCCCCCEEec
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRLNL 499 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~L 499 (531)
...++|+.|.+... ..|..++.|.+|.|.+|.++-.-|.--..+++|+.|.|.+|.|. .+- +-+..+++|+.|.+
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeee
Confidence 45789999987632 34667888999999999999555544455778999999999887 333 23667889999999
Q ss_pred cCCCCCCCCChh---hhhhccccceeeec
Q 009603 500 NGNTLSGRVPAA---LGGRLLHRASFKYV 525 (531)
Q Consensus 500 ~~N~l~g~iP~~---~~~~~~~l~~l~l~ 525 (531)
-+|..+ ..+.- +-..+.++..||+.
T Consensus 121 l~Npv~-~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 121 LGNPVE-HKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cCCchh-cccCceeEEEEecCcceEeehh
Confidence 999876 33321 22334455666654
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.07 E-value=0.018 Score=55.62 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=55.9
Q ss_pred ccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC--cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhh--h
Q 009603 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN--FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG--R 515 (531)
Q Consensus 440 l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N--~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~--~ 515 (531)
.-.+..|+.|.+.+-.++ .+ ..+..|++|+.|.||.| ..++.++.....+++|++|+|++|++. +++.+.. .
T Consensus 39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhh
Confidence 334455556666665555 21 24567899999999999 777777776777899999999999986 3444322 2
Q ss_pred ccccceeeecc
Q 009603 516 LLHRASFKYVW 526 (531)
Q Consensus 516 ~~~l~~l~l~~ 526 (531)
+.+|..|++..
T Consensus 115 l~nL~~Ldl~n 125 (260)
T KOG2739|consen 115 LENLKSLDLFN 125 (260)
T ss_pred hcchhhhhccc
Confidence 33455666553
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.0079 Score=61.83 Aligned_cols=83 Identities=23% Similarity=0.325 Sum_probs=55.0
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCC--ccccCCCCCCEEecCCCcCCC-CCccc-----ccCCCC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP--SSLGTIASLEVLDLSYNFFNG-SIPES-----LGQLTA 493 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g-~iP~~-----l~~l~~ 493 (531)
+..|.|+.|+..+.-......+..|+.|||++|++- ..+ ...+.++.|+.|+++.+.+.. .+|+. ...+++
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 667788888633333344455677888888888775 333 456777888888888877763 12322 345678
Q ss_pred CCEEeccCCCCC
Q 009603 494 LRRLNLNGNTLS 505 (531)
Q Consensus 494 L~~L~L~~N~l~ 505 (531)
|+.|+++.|++.
T Consensus 303 L~~L~i~~N~I~ 314 (505)
T KOG3207|consen 303 LEYLNISENNIR 314 (505)
T ss_pred ceeeecccCccc
Confidence 888888888874
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.0034 Score=60.92 Aligned_cols=65 Identities=32% Similarity=0.367 Sum_probs=33.0
Q ss_pred CCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc--cccCCCCCCEEeccCCCCCCCCC
Q 009603 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--SLGQLTALRRLNLNGNTLSGRVP 509 (531)
Q Consensus 442 ~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~L~~N~l~g~iP 509 (531)
+|+.|+.|.||-|.++..- .+..|++|+.|.|..|.|. .+-+ -+.++++|+.|-|..|.-.|.-+
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 4555555555555555222 2445555555555555554 2221 23455555555555555555444
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.56 E-value=0.015 Score=33.99 Aligned_cols=18 Identities=61% Similarity=0.719 Sum_probs=8.1
Q ss_pred CCEEecCCCcCCCCCcccc
Q 009603 470 LEVLDLSYNFFNGSIPESL 488 (531)
Q Consensus 470 L~~L~Ls~N~l~g~iP~~l 488 (531)
|++|||++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 444433
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.0071 Score=59.31 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=52.3
Q ss_pred CCCEEEccCCccCcc-CCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC-CCCCCCCChhhhhhcccccee
Q 009603 445 HLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG-NTLSGRVPAALGGRLLHRASF 522 (531)
Q Consensus 445 ~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~-N~l~g~iP~~~~~~~~~l~~l 522 (531)
.|++||||+..++-. +-.-+.+|.+|+.|.|.++++.-.|-..+.+-.+|+.|+|+. |.|+..--..+...+..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 467777777666521 223355677777777777777766666777777777777775 334422122334455566777
Q ss_pred eeccccCC
Q 009603 523 KYVWAMDY 530 (531)
Q Consensus 523 ~l~~~~~~ 530 (531)
|++|+.++
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 77777653
No 60
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.70 E-value=0.0042 Score=58.84 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=72.5
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
+++.|||+.|.+. .+...+..++.|..|+|+-|++. .+|..++++..+..+++..|.++ ..|.+++++++++.+++.
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 5889999999876 34556777888999999999998 78999999999999999999998 899999999999999999
Q ss_pred CCCCC
Q 009603 501 GNTLS 505 (531)
Q Consensus 501 ~N~l~ 505 (531)
.|.|.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 99876
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.47 E-value=0.23 Score=51.82 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=5.9
Q ss_pred CCCEEeccCCCC
Q 009603 493 ALRRLNLNGNTL 504 (531)
Q Consensus 493 ~L~~L~L~~N~l 504 (531)
+|++|++++|..
T Consensus 157 SLk~L~Is~c~~ 168 (426)
T PRK15386 157 SLKTLSLTGCSN 168 (426)
T ss_pred cccEEEecCCCc
Confidence 355555554443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.31 E-value=0.14 Score=47.76 Aligned_cols=60 Identities=25% Similarity=0.361 Sum_probs=49.1
Q ss_pred CCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCC
Q 009603 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505 (531)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 505 (531)
.....+||++|.+. .++ .|..++.|.+|.|++|+|+..-|.--..+++|..|.|.+|++.
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 45678999999997 333 6778999999999999999666654456788999999999986
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.26 E-value=0.33 Score=50.72 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=5.2
Q ss_pred CCCEEEccCC
Q 009603 445 HLQSINLSGN 454 (531)
Q Consensus 445 ~L~~L~Ls~N 454 (531)
+|+.|++++|
T Consensus 95 nLe~L~Ls~C 104 (426)
T PRK15386 95 GLEKLTVCHC 104 (426)
T ss_pred hhhheEccCc
Confidence 4555555554
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.94 E-value=0.1 Score=50.80 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=21.0
Q ss_pred ccCCCCCCEEEccCCccCccCCcc----ccCCCCCCEEecCCCcCC
Q 009603 440 ISKLRHLQSINLSGNSIRGAIPSS----LGTIASLEVLDLSYNFFN 481 (531)
Q Consensus 440 l~~L~~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~L~Ls~N~l~ 481 (531)
+.++++|+..+||.|.|.-..|+. +.+-+.|..|.|++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 444555555555555555444433 233445555555555443
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=0.061 Score=52.94 Aligned_cols=84 Identities=25% Similarity=0.298 Sum_probs=66.6
Q ss_pred EEEEEEccCCCCccc--CcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc-ccccCCCCCCEE
Q 009603 421 VIDGLGLDNQGLRGF--LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRL 497 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L 497 (531)
+|.+++|.+|.|+.. +...+.+|++|+.|+|+.|.++..|-..-..+.+|++|-|.+..+.+.-- ..+..++.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 478999999999853 45567889999999999999996665433567899999999988876544 345678888888
Q ss_pred eccCCCC
Q 009603 498 NLNGNTL 504 (531)
Q Consensus 498 ~L~~N~l 504 (531)
+++.|++
T Consensus 152 HmS~N~~ 158 (418)
T KOG2982|consen 152 HMSDNSL 158 (418)
T ss_pred hhccchh
Confidence 8888844
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.35 E-value=0.13 Score=28.00 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=5.3
Q ss_pred CCCEEeccCCCCC
Q 009603 493 ALRRLNLNGNTLS 505 (531)
Q Consensus 493 ~L~~L~L~~N~l~ 505 (531)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.23 E-value=0.19 Score=30.41 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=14.9
Q ss_pred CCCCCEEeccCCCCCCCCChhhh
Q 009603 491 LTALRRLNLNGNTLSGRVPAALG 513 (531)
Q Consensus 491 l~~L~~L~L~~N~l~g~iP~~~~ 513 (531)
|++|+.|+|++|+++ .||...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 456777777777777 6776543
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.23 E-value=0.19 Score=30.41 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=14.9
Q ss_pred CCCCCEEeccCCCCCCCCChhhh
Q 009603 491 LTALRRLNLNGNTLSGRVPAALG 513 (531)
Q Consensus 491 l~~L~~L~L~~N~l~g~iP~~~~ 513 (531)
|++|+.|+|++|+++ .||...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 456777777777777 6776543
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.14 E-value=0.12 Score=52.05 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=50.9
Q ss_pred cCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCC--C--CcccccCCCCCCEEeccCCCCCCCCChhh
Q 009603 441 SKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNG--S--IPESLGQLTALRRLNLNGNTLSGRVPAAL 512 (531)
Q Consensus 441 ~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g--~--iP~~l~~l~~L~~L~L~~N~l~g~iP~~~ 512 (531)
.+-+.|+.+...+|.+... +...|..++.|+.+.++.|.+.- . +-..+..+++|++|||..|-|+-.--..+
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3445666666666666421 12234556667777777776541 1 11345678889999999998873222223
Q ss_pred hhh---ccccceeeecccc
Q 009603 513 GGR---LLHRASFKYVWAM 528 (531)
Q Consensus 513 ~~~---~~~l~~l~l~~~~ 528 (531)
+.. ..+++.|++++|.
T Consensus 234 akaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHhcccchheeecccccc
Confidence 322 2256777777664
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.68 E-value=0.19 Score=27.26 Aligned_cols=13 Identities=46% Similarity=0.562 Sum_probs=5.4
Q ss_pred CCCEEecCCCcCC
Q 009603 469 SLEVLDLSYNFFN 481 (531)
Q Consensus 469 ~L~~L~Ls~N~l~ 481 (531)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 71
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.81 E-value=0.21 Score=56.17 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=51.3
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCc-cCCccccCCCCCCEEecCCCcCCCCC--cc----cccCCCC
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSI--PE----SLGQLTA 493 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~i--P~----~l~~l~~ 493 (531)
.|..||+++.+++-. ..+++|++|+.|.+.+=.+.. ..-..+.+|++|++||+|.......- .. .-..|++
T Consensus 174 NL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe 251 (699)
T KOG3665|consen 174 NLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE 251 (699)
T ss_pred ccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence 366777777776633 456677777776665544431 22235667777888887766554211 11 1124777
Q ss_pred CCEEeccCCCCCCCC
Q 009603 494 LRRLNLNGNTLSGRV 508 (531)
Q Consensus 494 L~~L~L~~N~l~g~i 508 (531)
|+.||.|+..+.+.+
T Consensus 252 LrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 252 LRFLDCSGTDINEEI 266 (699)
T ss_pred ccEEecCCcchhHHH
Confidence 788887777666544
No 72
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.78 E-value=0.14 Score=57.45 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=72.5
Q ss_pred EEEEEEccCCCCcc-cCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC-CCcccccCCCCCCEEe
Q 009603 421 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLN 498 (531)
Q Consensus 421 ~l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~ 498 (531)
.|++|.+.+-.+.. .+.....++++|..||+|+.+++-. ..+++|++|++|.+.+=.|.- ..-..+.+|++|++||
T Consensus 149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 47888888877643 2344567899999999999999833 688899999999888776662 2223577899999999
Q ss_pred ccCCCCCCCCC---hh---hhhhccccceeeec
Q 009603 499 LNGNTLSGRVP---AA---LGGRLLHRASFKYV 525 (531)
Q Consensus 499 L~~N~l~g~iP---~~---~~~~~~~l~~l~l~ 525 (531)
+|..... ..+ .. .+..+++|+.||-+
T Consensus 227 IS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 227 ISRDKNN-DDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred ccccccc-cchHHHHHHHHhcccCccccEEecC
Confidence 9987655 233 21 23344566666655
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.77 E-value=0.57 Score=45.79 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=12.7
Q ss_pred CCCCCCEEeccCCCCC
Q 009603 490 QLTALRRLNLNGNTLS 505 (531)
Q Consensus 490 ~l~~L~~L~L~~N~l~ 505 (531)
.+.+|++|+|..|-|+
T Consensus 212 y~~~LevLDlqDNtft 227 (388)
T COG5238 212 YSHSLEVLDLQDNTFT 227 (388)
T ss_pred HhCcceeeeccccchh
Confidence 3677888888888886
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=87.37 E-value=0.093 Score=52.74 Aligned_cols=86 Identities=28% Similarity=0.373 Sum_probs=52.2
Q ss_pred eEEEEEEccCCCCcc----cCcccccCCCCCCEEEccCCccCccCCcc----c-cCCCCCCEEecCCCcCCCC----Ccc
Q 009603 420 WVIDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGAIPSS----L-GTIASLEVLDLSYNFFNGS----IPE 486 (531)
Q Consensus 420 ~~l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~----l-~~l~~L~~L~Ls~N~l~g~----iP~ 486 (531)
.+++.|+|..|-++- .+...++.+++|+.|+++.+.+...=-.. + ...++|++|.|.+|.++-. +-.
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 456777777777652 23345666777777777777765221111 1 2356777777777777631 122
Q ss_pred cccCCCCCCEEeccCCCCC
Q 009603 487 SLGQLTALRRLNLNGNTLS 505 (531)
Q Consensus 487 ~l~~l~~L~~L~L~~N~l~ 505 (531)
.+...+.|+.|+|++|+|.
T Consensus 293 ~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhcchhhHHhcCCccccc
Confidence 3445677888888888873
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.10 E-value=0.013 Score=55.64 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=68.9
Q ss_pred ccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhcc
Q 009603 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL 517 (531)
Q Consensus 438 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~ 517 (531)
.++......+.|||+.|++- .+-..+..++.|..|||+.|++. .+|..++++..+..+++..|+++ ..|.+++..+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~- 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP- 111 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC-
Confidence 46777788899999999997 55667778899999999999998 89999999999999999999998 8998887653
Q ss_pred ccceee
Q 009603 518 HRASFK 523 (531)
Q Consensus 518 ~l~~l~ 523 (531)
++..++
T Consensus 112 ~~k~~e 117 (326)
T KOG0473|consen 112 HPKKNE 117 (326)
T ss_pred Ccchhh
Confidence 555444
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.77 E-value=1.4 Score=37.72 Aligned_cols=96 Identities=15% Similarity=0.250 Sum_probs=42.2
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.+.+.. .+...-...+.++++|+.+.+..+ +...-...|..+.+|+.+.+.. .+.-.-...|..+.+|+.+.+..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 55566553 444433445666667777777664 4423334566666677777754 33312223455566777777755
Q ss_pred CCCCCCCChhhhhhccccceee
Q 009603 502 NTLSGRVPAALGGRLLHRASFK 523 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~ 523 (531)
| +. .++....... .+..+.
T Consensus 91 ~-~~-~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 91 N-IT-EIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp T--B-EEHTTTTTT--T--EEE
T ss_pred c-cc-EEchhhhcCC-CceEEE
Confidence 4 33 3444333333 344443
No 77
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=85.50 E-value=0.84 Score=44.58 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=58.7
Q ss_pred EEEccCCCCCCcCCCCCceeeccCcccC------CcccccC--CCCCCCCCcceeeccCCCCCCcceEEeeecCCceeEE
Q 009603 28 MRISCGARQNIHSPPTNTLWFKDFAYTG------GIPANAT--RPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNV 99 (531)
Q Consensus 28 i~IdCG~~~~~~~~~~g~~w~~D~~~~~------~~~~~~~--~~~~~~~~y~t~R~F~~~~g~~~cY~~~~~~~g~ylv 99 (531)
..|+||.+.. +|..|+.|-.|..-.- |....+. ...-...+|+|+|+=.. .|.|..|+...|.|-+
T Consensus 62 ~aVncGgdaa--vd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgyd~pik~dgdyal 135 (355)
T KOG3593|consen 62 PAVNCGGDAA--VDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGYDVPIKEDGDYAL 135 (355)
T ss_pred heeccCChhh--hcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----hhcccccccCCCceeh
Confidence 4599998764 4667999999842111 2111111 11112347999999643 4789999999999999
Q ss_pred EEEEecccCCCCCCCCcEEEEEc
Q 009603 100 RIFFGLVTLTSFDHEPLFDISVE 122 (531)
Q Consensus 100 Rl~F~~~~y~~~~~~~~F~v~~~ 122 (531)
=+.|....++. .+.-.|||.++
T Consensus 136 vlkfaevyF~~-~q~kvfdvrln 157 (355)
T KOG3593|consen 136 VLKFAEVYFKT-CQHKVFDVRLN 157 (355)
T ss_pred hhhHHHHHHHh-hhhhheeeeec
Confidence 89997764432 24447999999
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.40 E-value=0.83 Score=27.52 Aligned_cols=20 Identities=40% Similarity=0.610 Sum_probs=13.6
Q ss_pred CCCCCEEecCCCcCCCCCccc
Q 009603 467 IASLEVLDLSYNFFNGSIPES 487 (531)
Q Consensus 467 l~~L~~L~Ls~N~l~g~iP~~ 487 (531)
|++|+.|+|++|+|+ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456777778777777 55543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.40 E-value=0.83 Score=27.52 Aligned_cols=20 Identities=40% Similarity=0.610 Sum_probs=13.6
Q ss_pred CCCCCEEecCCCcCCCCCccc
Q 009603 467 IASLEVLDLSYNFFNGSIPES 487 (531)
Q Consensus 467 l~~L~~L~Ls~N~l~g~iP~~ 487 (531)
|++|+.|+|++|+|+ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456777778777777 55543
No 80
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.50 E-value=0.1 Score=51.03 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=61.1
Q ss_pred eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCC-ccccCCCCCCEEecCCCcCCCCCccc-----ccCCCC
Q 009603 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPES-----LGQLTA 493 (531)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~iP~~-----l~~l~~ 493 (531)
..|+.|.|+-|.|+..-| +..++.|+.|.|..|.|...-. .-+.++++|+.|.|..|.-.|.-+.. +.-|++
T Consensus 41 p~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred ccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 348899999999985543 7788999999999999873211 34789999999999999999887753 445788
Q ss_pred CCEEe
Q 009603 494 LRRLN 498 (531)
Q Consensus 494 L~~L~ 498 (531)
|+.||
T Consensus 119 LkKLD 123 (388)
T KOG2123|consen 119 LKKLD 123 (388)
T ss_pred chhcc
Confidence 88775
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.77 E-value=3 Score=35.55 Aligned_cols=88 Identities=16% Similarity=0.319 Sum_probs=47.6
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc-ccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L~ 500 (531)
++.|.+.++ +...-...+.++..|+.+.+.+ .+...-...|..+++|+.+++..+ +. .++ ..+.+. +|+.+.+.
T Consensus 37 l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 37 LKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred ccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 667788764 6555456788888899999976 444233456777999999999775 54 333 456676 89999887
Q ss_pred CCCCCCCCChhhhhhc
Q 009603 501 GNTLSGRVPAALGGRL 516 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~ 516 (531)
. .+. .|+...+...
T Consensus 112 ~-~~~-~i~~~~F~~~ 125 (129)
T PF13306_consen 112 S-NIT-KIEENAFKNC 125 (129)
T ss_dssp T-B-S-S----GGG--
T ss_pred C-Ccc-EECCcccccc
Confidence 6 444 4666554443
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.52 E-value=1.6 Score=26.57 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=13.0
Q ss_pred CCCCEEeccCCCCCCCCCh
Q 009603 492 TALRRLNLNGNTLSGRVPA 510 (531)
Q Consensus 492 ~~L~~L~L~~N~l~g~iP~ 510 (531)
++|+.|++++|+|+ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777778888777 6775
No 83
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=75.70 E-value=0.11 Score=51.37 Aligned_cols=104 Identities=24% Similarity=0.262 Sum_probs=43.1
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCc-cCcc-CCccccCCCCCCEEecCCCcCCCCCcccc-cC-CCCCCEE
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESL-GQ-LTALRRL 497 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l-~~-l~~L~~L 497 (531)
+..|.|.++.|...+-..+.+-..|+.|+|+..+ |+.. .---+.+|+.|+.|+|+.+.++-..-..+ .. -.+|..|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 3344444444444444444444455555544321 2100 00123345555555555555443222111 11 1235555
Q ss_pred eccCCC--CCCCCChhhhhhccccceeeec
Q 009603 498 NLNGNT--LSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 498 ~L~~N~--l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|++.. |.-+.=+.+...+.++..|||+
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence 555421 1111223444555566666665
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=72.96 E-value=0.81 Score=27.01 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=6.0
Q ss_pred CCCCEEeccCCCCC
Q 009603 492 TALRRLNLNGNTLS 505 (531)
Q Consensus 492 ~~L~~L~L~~N~l~ 505 (531)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.66 E-value=6.7 Score=23.89 Aligned_cols=14 Identities=50% Similarity=0.541 Sum_probs=7.7
Q ss_pred CCCCEEecCCCcCC
Q 009603 468 ASLEVLDLSYNFFN 481 (531)
Q Consensus 468 ~~L~~L~Ls~N~l~ 481 (531)
.+|+.|+|+.|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555554
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=52.68 E-value=11 Score=23.18 Aligned_cols=11 Identities=55% Similarity=0.863 Sum_probs=4.9
Q ss_pred CCEEeccCCCC
Q 009603 494 LRRLNLNGNTL 504 (531)
Q Consensus 494 L~~L~L~~N~l 504 (531)
|++|+|++|.|
T Consensus 4 L~~LdL~~N~i 14 (28)
T smart00368 4 LRELDLSNNKL 14 (28)
T ss_pred cCEEECCCCCC
Confidence 44444444444
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.75 E-value=3.2 Score=39.00 Aligned_cols=81 Identities=25% Similarity=0.227 Sum_probs=52.1
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCcc-CCcccc-CCCCCCEEecCCC-cCCCCCcccccCCCCCCEE
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLG-TIASLEVLDLSYN-FFNGSIPESLGQLTALRRL 497 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-ip~~l~-~l~~L~~L~Ls~N-~l~g~iP~~l~~l~~L~~L 497 (531)
.++.++-++..|...=-..+.+|+.|+.|.+.+..--+. .-+.++ -.++|+.|+|++| +|+-.=-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 488899998888755445677777777777766542111 111122 2468999999976 4543333456778888888
Q ss_pred eccC
Q 009603 498 NLNG 501 (531)
Q Consensus 498 ~L~~ 501 (531)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7764
No 88
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=43.10 E-value=9.3 Score=40.55 Aligned_cols=85 Identities=26% Similarity=0.200 Sum_probs=50.7
Q ss_pred eEEEEEEccCC-CCcccC----cccccCCCCCCEEEccCCc-cCccCCcccc-CCCCCCEEecCCCc-CCCCCc-ccccC
Q 009603 420 WVIDGLGLDNQ-GLRGFL----PNGISKLRHLQSINLSGNS-IRGAIPSSLG-TIASLEVLDLSYNF-FNGSIP-ESLGQ 490 (531)
Q Consensus 420 ~~l~~L~L~~n-~l~g~~----p~~l~~L~~L~~L~Ls~N~-l~g~ip~~l~-~l~~L~~L~Ls~N~-l~g~iP-~~l~~ 490 (531)
..++.|+++++ ...... ......+..|+.|+|+... ++...-..+. .|++|+.|.+..+. ++..-- ....+
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 35888888873 211111 1234456888889988877 4433222333 37889999876665 332111 12345
Q ss_pred CCCCCEEeccCCCC
Q 009603 491 LTALRRLNLNGNTL 504 (531)
Q Consensus 491 l~~L~~L~L~~N~l 504 (531)
+++|++|+|+.+..
T Consensus 294 ~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 294 CPSLRELDLSGCHG 307 (482)
T ss_pred cCcccEEeeecCcc
Confidence 77899999987654
No 89
>PRK06764 hypothetical protein; Provisional
Probab=34.40 E-value=37 Score=26.87 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.9
Q ss_pred ceEEeeecCCceeEEEEE
Q 009603 85 NCYIINRVPKGHYNVRIF 102 (531)
Q Consensus 85 ~cY~~~~~~~g~ylvRl~ 102 (531)
+.|++...++|+|.||..
T Consensus 74 nkyti~f~kpg~yvirvn 91 (105)
T PRK06764 74 NKYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeeEEEecCCccEEEEEc
Confidence 689998899999999974
No 90
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=34.03 E-value=3.3e+02 Score=23.93 Aligned_cols=80 Identities=16% Similarity=0.295 Sum_probs=42.8
Q ss_pred ecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeeEE---EeecCCCCC-------ccceEEEEE--EEecCCe---EEE
Q 009603 91 RVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIY---SLKSGWSDH-------DDRAFAEAL--VFLRDGT---VSI 155 (531)
Q Consensus 91 ~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w~---~v~~~~~~~-------~~~~~~E~~--~~~~~~~---l~v 155 (531)
.....+|-||+.+.- +....+.+..++.... ++...++.. ...-+.|+. +...... +.|
T Consensus 48 ~~~~~~YrIRiRYAs------~~~~~~~i~~~~~~~~~~~~~~~T~~~~~~~~~~y~~F~y~~~~~~~~~~~~~~~~~~i 121 (143)
T PF03944_consen 48 NSSSQKYRIRIRYAS------NSNGTLSISINNSSGNLSFNFPSTMSNGDNLTLNYESFQYVEFPTPFTFSSNQSITITI 121 (143)
T ss_dssp SSSTEEEEEEEEEEE------SS-EEEEEEETTEEEECEEEE--SSSTTGGCCETGGG-EEEEESSEEEESTSEEEEEEE
T ss_pred CCCCceEEEEEEEEE------CCCcEEEEEECCccceeeeeccccccCCCccccccceeEeeecCceEEecCCCceEEEE
Confidence 345679999999874 2334677777764332 222222221 123445543 2233433 556
Q ss_pred EEeecCC-CCCcEEeEEEEEcC
Q 009603 156 CFHSTGH-GDPAILSLEILQVD 176 (531)
Q Consensus 156 ~f~~~~~-~~pfIsaiEl~~l~ 176 (531)
.+.+... +.=+|-.||..|+.
T Consensus 122 ~i~~~~~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 122 SIQNISSNGNVYIDKIEFIPVN 143 (143)
T ss_dssp EEESSTTTS-EEEEEEEEEECT
T ss_pred EEEecCCCCeEEEEeEEEEeCC
Confidence 5555444 44568899999974
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.46 E-value=20 Score=38.69 Aligned_cols=65 Identities=26% Similarity=0.193 Sum_probs=39.6
Q ss_pred eEEEEEEccCCCCccc--CcccccCCCCCCEEEccCCccCccCCccccCC--CCCCEEecCCCcCCCCC
Q 009603 420 WVIDGLGLDNQGLRGF--LPNGISKLRHLQSINLSGNSIRGAIPSSLGTI--ASLEVLDLSYNFFNGSI 484 (531)
Q Consensus 420 ~~l~~L~L~~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l--~~L~~L~Ls~N~l~g~i 484 (531)
+.|.+++|++|.|.-. +..--..-++|..|+|++|...-.--.++.++ ..|+.|-|.+|.+.-..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 3588899999987632 12222335778889999983221122233332 34778888888877543
No 92
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=32.82 E-value=2.9e+02 Score=23.06 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=42.5
Q ss_pred CeEEE-EecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECC--eeeccCCceeeecCCceeeEEEEEEeeecCceEEEE
Q 009603 269 DLQYT-MDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILING--DIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVT 345 (531)
Q Consensus 269 ~l~~~-~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing--~~~~~~~di~~~~~~~~~~~~~~~~v~~~~~~l~i~ 345 (531)
.+.|. .++...+.|.+.+..+--. +.+.+.|+||+ -.....+++.. +++...-......+....|.-.|.
T Consensus 33 ~~~~~~Vd~~~~g~y~~~~~~a~~~------~~~~~~l~id~~~g~~~~~~~~~~-tg~w~~~~~~~~~v~l~~G~h~i~ 105 (125)
T PF03422_consen 33 WIEYNNVDVPEAGTYTLTIRYANGG------GGGTIELRIDGPDGTLIGTVSLPP-TGGWDTWQTVSVSVKLPAGKHTIY 105 (125)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEESS------SSEEEEEEETTTTSEEEEEEEEE--ESSTTEEEEEEEEEEEESEEEEEE
T ss_pred EEEEEEEeeCCCceEEEEEEEECCC------CCcEEEEEECCCCCcEEEEEEEcC-CCCccccEEEEEEEeeCCCeeEEE
Confidence 47888 8887889999998887632 22889999998 22344455533 333211122223444444554555
Q ss_pred Ecc
Q 009603 346 LHP 348 (531)
Q Consensus 346 ~~p 348 (531)
|..
T Consensus 106 l~~ 108 (125)
T PF03422_consen 106 LVF 108 (125)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 93
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=23.58 E-value=39 Score=35.71 Aligned_cols=79 Identities=24% Similarity=0.221 Sum_probs=44.2
Q ss_pred EEEEEEccCCC-CcccCcccccC-CCCCCEEEccCCc-cCccC-CccccCCCCCCEEecCCCcCCCC--CcccccCCCCC
Q 009603 421 VIDGLGLDNQG-LRGFLPNGISK-LRHLQSINLSGNS-IRGAI-PSSLGTIASLEVLDLSYNFFNGS--IPESLGQLTAL 494 (531)
Q Consensus 421 ~l~~L~L~~n~-l~g~~p~~l~~-L~~L~~L~Ls~N~-l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~--iP~~l~~l~~L 494 (531)
.++.|+|+... ++...=..+.. ++.|+.|.+.+.. ++..- -.....+++|+.|+|+.+..... +.....++++|
T Consensus 244 ~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l 323 (482)
T KOG1947|consen 244 KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNL 323 (482)
T ss_pred CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcch
Confidence 46778888777 33222222332 6788888866655 44221 12234578899999987655321 22223345555
Q ss_pred CEEec
Q 009603 495 RRLNL 499 (531)
Q Consensus 495 ~~L~L 499 (531)
+.|.+
T Consensus 324 ~~l~~ 328 (482)
T KOG1947|consen 324 RELKL 328 (482)
T ss_pred hhhhh
Confidence 55443
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.81 E-value=50 Score=35.82 Aligned_cols=63 Identities=29% Similarity=0.283 Sum_probs=36.9
Q ss_pred CCCCCEEEccCCccCccC--CccccCCCCCCEEecCCC--cCCCCCcccccC--CCCCCEEeccCCCCCCC
Q 009603 443 LRHLQSINLSGNSIRGAI--PSSLGTIASLEVLDLSYN--FFNGSIPESLGQ--LTALRRLNLNGNTLSGR 507 (531)
Q Consensus 443 L~~L~~L~Ls~N~l~g~i--p~~l~~l~~L~~L~Ls~N--~l~g~iP~~l~~--l~~L~~L~L~~N~l~g~ 507 (531)
.+.+..++|++|+|...- -.--..-++|+.|+|++| .+. .-.++.+ ...|++|-|.+|.+...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 445667788888876211 111223567888888888 333 1122332 33477888888877543
Done!