Query 009603
Match_columns 531
No_of_seqs 484 out of 3081
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.9 3.1E-27 1.1E-31 217.6 6.2 154 193-364 5-171 (174)
2 2jwp_A Malectin, MGC80075; sug 99.9 1.7E-21 5.8E-26 179.2 15.7 141 26-176 6-172 (174)
3 1ogq_A PGIP-2, polygalacturona 99.7 6.9E-18 2.4E-22 170.0 11.6 150 370-525 2-157 (313)
4 4ecn_A Leucine-rich repeat pro 99.7 4.4E-17 1.5E-21 184.8 11.1 148 371-527 266-525 (876)
5 4eco_A Uncharacterized protein 99.6 2.7E-16 9.4E-21 173.6 10.4 145 372-527 28-283 (636)
6 3rgz_A Protein brassinosteroid 99.5 5.4E-15 1.8E-19 166.8 9.0 148 369-526 7-187 (768)
7 4fcg_A Uncharacterized protein 99.5 7.7E-15 2.6E-19 148.7 4.1 154 369-525 22-191 (328)
8 3e6j_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 129.0 11.4 120 405-526 20-144 (229)
9 1w8a_A SLIT protein; signaling 99.4 2.7E-13 9.2E-18 126.3 8.9 121 404-525 8-134 (192)
10 2o6r_A Variable lymphocyte rec 99.4 5.4E-13 1.8E-17 122.3 10.3 122 404-526 7-133 (177)
11 2wfh_A SLIT homolog 2 protein 99.4 5.8E-13 2E-17 124.3 10.6 120 404-525 10-134 (193)
12 1ogq_A PGIP-2, polygalacturona 99.4 1.7E-13 5.6E-18 137.8 5.6 106 421-526 77-183 (313)
13 2o6s_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 122.6 10.6 121 404-525 7-132 (208)
14 2v9t_B SLIT homolog 2 protein 99.3 2.4E-12 8.1E-17 122.6 10.1 121 404-525 11-136 (220)
15 3rgz_A Protein brassinosteroid 99.3 7E-13 2.4E-17 149.5 6.8 91 421-511 633-723 (768)
16 2v70_A SLIT-2, SLIT homolog 2 99.3 6E-12 2.1E-16 119.8 9.6 103 422-525 59-161 (220)
17 3g39_A Variable lymphocyte rec 99.3 5.8E-12 2E-16 114.9 8.5 106 404-509 9-119 (170)
18 2v70_A SLIT-2, SLIT homolog 2 99.3 1E-11 3.6E-16 118.1 10.2 103 422-525 34-137 (220)
19 2v9t_B SLIT homolog 2 protein 99.3 1.7E-11 5.7E-16 116.7 10.5 104 421-525 57-160 (220)
20 3m19_A Variable lymphocyte rec 99.2 2.6E-11 8.7E-16 117.6 11.2 103 422-525 61-163 (251)
21 2o6q_A Variable lymphocyte rec 99.2 1.9E-11 6.7E-16 119.8 10.4 132 392-525 5-141 (270)
22 1w8a_A SLIT protein; signaling 99.2 1.8E-11 6.3E-16 113.8 8.1 90 421-510 55-144 (192)
23 3g39_A Variable lymphocyte rec 99.2 6.1E-11 2.1E-15 108.1 11.1 99 423-525 12-110 (170)
24 4fcg_A Uncharacterized protein 99.2 3.7E-11 1.3E-15 121.4 10.5 103 421-525 207-309 (328)
25 2r9u_A Variable lymphocyte rec 99.2 7.2E-11 2.5E-15 108.1 11.1 89 421-510 34-122 (174)
26 3e6j_A Variable lymphocyte rec 99.2 5E-11 1.7E-15 114.1 10.4 102 422-525 66-167 (229)
27 3m19_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 115.2 10.7 105 421-526 84-188 (251)
28 3v47_A TOLL-like receptor 5B a 99.2 1.7E-11 5.9E-16 129.0 7.2 89 421-509 31-120 (455)
29 2o6s_A Variable lymphocyte rec 99.2 7.5E-11 2.6E-15 110.8 10.6 103 422-525 54-156 (208)
30 4g8a_A TOLL-like receptor 4; l 99.2 3.4E-11 1.2E-15 131.6 9.5 105 421-526 53-157 (635)
31 2je0_A Acidic leucine-rich nuc 99.2 3.1E-11 1.1E-15 107.1 7.3 103 421-525 43-148 (149)
32 2r9u_A Variable lymphocyte rec 99.2 7.5E-11 2.5E-15 108.0 9.6 99 423-525 15-113 (174)
33 2xot_A Amphoterin-induced prot 99.2 5.4E-11 1.9E-15 121.8 9.3 102 404-505 18-125 (361)
34 2je0_A Acidic leucine-rich nuc 99.2 2.4E-11 8.2E-16 107.8 5.7 103 421-526 18-122 (149)
35 2ell_A Acidic leucine-rich nuc 99.1 4.7E-11 1.6E-15 108.2 7.3 105 421-528 50-158 (168)
36 4eco_A Uncharacterized protein 99.1 1.5E-11 5.2E-16 135.6 4.7 95 431-526 194-314 (636)
37 2z81_A CD282 antigen, TOLL-lik 99.1 5.9E-11 2E-15 128.0 9.2 105 421-526 27-132 (549)
38 2z80_A TOLL-like receptor 2, v 99.1 7.2E-11 2.5E-15 120.3 9.0 105 421-526 53-158 (353)
39 2xot_A Amphoterin-induced prot 99.1 9.3E-11 3.2E-15 120.1 9.7 83 422-505 90-176 (361)
40 3zyi_A Leucine-rich repeat-con 99.1 1.3E-10 4.3E-15 122.7 11.0 121 405-526 55-180 (452)
41 2ifg_A High affinity nerve gro 99.1 1.1E-10 3.8E-15 118.5 9.9 102 404-506 8-117 (347)
42 3rfs_A Internalin B, repeat mo 99.1 1.8E-10 6E-15 113.1 10.7 105 421-526 110-214 (272)
43 3rfs_A Internalin B, repeat mo 99.1 2.1E-10 7E-15 112.6 10.8 90 421-510 134-223 (272)
44 1p9a_G Platelet glycoprotein I 99.1 2.2E-10 7.6E-15 113.7 10.7 103 421-525 101-203 (290)
45 1dce_A Protein (RAB geranylger 99.1 1.6E-10 5.6E-15 125.4 10.4 101 421-524 464-567 (567)
46 4ecn_A Leucine-rich repeat pro 99.1 3.1E-11 1.1E-15 136.9 4.8 91 436-526 440-557 (876)
47 2ell_A Acidic leucine-rich nuc 99.1 1E-10 3.4E-15 106.0 7.3 101 422-526 26-129 (168)
48 2z66_A Variable lymphocyte rec 99.1 1E-10 3.6E-15 116.5 8.0 104 422-525 152-256 (306)
49 1dce_A Protein (RAB geranylger 99.1 1.6E-10 5.4E-15 125.5 9.9 99 422-526 443-542 (567)
50 4g8a_A TOLL-like receptor 4; l 99.1 1.2E-10 4.1E-15 127.3 8.5 105 421-525 470-575 (635)
51 2z62_A TOLL-like receptor 4, v 99.1 1.6E-10 5.5E-15 113.4 8.6 105 421-526 53-158 (276)
52 2ifg_A High affinity nerve gro 99.1 3E-10 1E-14 115.3 10.1 98 424-525 12-111 (347)
53 3v47_A TOLL-like receptor 5B a 99.1 2.2E-10 7.6E-15 120.4 9.4 103 422-525 301-403 (455)
54 2o6q_A Variable lymphocyte rec 99.1 5.1E-10 1.7E-14 109.6 10.8 103 422-525 111-213 (270)
55 1p9a_G Platelet glycoprotein I 99.0 5.3E-10 1.8E-14 110.9 10.6 83 422-505 126-208 (290)
56 2id5_A Lingo-1, leucine rich r 99.0 2.9E-10 1E-14 120.5 9.3 121 405-526 12-137 (477)
57 1ozn_A Reticulon 4 receptor; N 99.0 4.9E-10 1.7E-14 110.5 10.1 103 422-525 131-233 (285)
58 2z62_A TOLL-like receptor 4, v 99.0 6E-10 2E-14 109.3 10.4 104 421-525 77-185 (276)
59 1ozn_A Reticulon 4 receptor; N 99.0 6.1E-10 2.1E-14 109.7 10.4 105 421-526 81-186 (285)
60 3t6q_A CD180 antigen; protein- 99.0 2.3E-10 8E-15 124.9 8.1 105 421-526 34-138 (606)
61 2ft3_A Biglycan; proteoglycan, 99.0 6.2E-10 2.1E-14 112.3 10.5 119 404-526 33-156 (332)
62 1a9n_A U2A', U2A'; complex (nu 99.0 2.3E-10 7.8E-15 104.6 6.5 103 421-527 43-150 (176)
63 4b8c_D Glucose-repressible alc 99.0 2.3E-10 7.8E-15 128.0 7.8 92 421-515 248-339 (727)
64 3zyj_A Leucine-rich repeat-con 99.0 5.3E-10 1.8E-14 117.5 10.1 121 405-526 44-169 (440)
65 2o6r_A Variable lymphocyte rec 99.0 3.9E-10 1.3E-14 103.1 8.0 89 421-509 53-141 (177)
66 3vq2_A TLR4, TOLL-like recepto 99.0 6.3E-10 2.1E-14 121.5 10.9 94 422-515 82-176 (606)
67 4ezg_A Putative uncharacterize 99.0 4.7E-10 1.6E-14 104.5 8.3 101 421-525 89-189 (197)
68 4b8c_D Glucose-repressible alc 99.0 6.4E-11 2.2E-15 132.5 2.7 101 421-526 225-325 (727)
69 2z66_A Variable lymphocyte rec 99.0 4.9E-10 1.7E-14 111.5 8.7 104 422-526 128-232 (306)
70 3vq2_A TLR4, TOLL-like recepto 99.0 8.4E-10 2.9E-14 120.5 11.0 104 422-526 58-162 (606)
71 1wwl_A Monocyte differentiatio 99.0 1.2E-10 4.1E-15 116.7 3.7 105 421-526 122-237 (312)
72 1xku_A Decorin; proteoglycan, 99.0 1.1E-09 3.9E-14 110.2 10.9 118 404-525 31-153 (330)
73 2xwt_C Thyrotropin receptor; s 99.0 3.8E-10 1.3E-14 108.3 6.9 102 421-525 32-138 (239)
74 2wfh_A SLIT homolog 2 protein 99.0 7.3E-10 2.5E-14 103.1 8.4 87 421-507 55-141 (193)
75 2z7x_B TOLL-like receptor 1, v 99.0 6.6E-10 2.3E-14 119.0 8.6 100 422-525 23-123 (520)
76 1ziw_A TOLL-like receptor 3; i 99.0 7.9E-10 2.7E-14 122.5 9.4 84 422-505 27-110 (680)
77 3oja_B Anopheles plasmodium-re 99.0 6.2E-10 2.1E-14 121.7 8.2 105 421-526 76-180 (597)
78 3j0a_A TOLL-like receptor 5; m 99.0 6.7E-10 2.3E-14 126.4 8.1 105 422-526 50-157 (844)
79 4ezg_A Putative uncharacterize 99.0 9.9E-10 3.4E-14 102.3 7.9 103 421-527 67-169 (197)
80 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.6E-09 5.5E-14 117.4 10.0 102 421-526 53-155 (562)
81 1wwl_A Monocyte differentiatio 98.9 3.2E-10 1.1E-14 113.6 3.8 106 421-526 150-262 (312)
82 2z81_A CD282 antigen, TOLL-lik 98.9 8.9E-10 3E-14 118.7 7.6 88 422-509 52-140 (549)
83 1a9n_A U2A', U2A'; complex (nu 98.9 2.1E-09 7.3E-14 98.1 8.5 99 422-526 21-122 (176)
84 3o6n_A APL1; leucine-rich repe 98.9 1.1E-09 3.7E-14 113.0 6.8 104 421-526 70-174 (390)
85 3o6n_A APL1; leucine-rich repe 98.9 2.8E-09 9.5E-14 109.9 9.9 101 421-525 94-194 (390)
86 3oja_B Anopheles plasmodium-re 98.9 2.5E-09 8.6E-14 116.9 10.0 101 421-525 100-200 (597)
87 2z7x_B TOLL-like receptor 1, v 98.9 1.3E-09 4.5E-14 116.7 7.4 102 421-526 349-453 (520)
88 3zyi_A Leucine-rich repeat-con 98.9 2.5E-09 8.4E-14 112.8 9.1 101 422-525 125-226 (452)
89 3j0a_A TOLL-like receptor 5; m 98.9 2.2E-09 7.4E-14 122.2 9.2 106 421-526 74-183 (844)
90 3t6q_A CD180 antigen; protein- 98.9 2.3E-09 7.7E-14 117.1 9.0 93 422-514 83-175 (606)
91 2id5_A Lingo-1, leucine rich r 98.9 3.2E-09 1.1E-13 112.4 9.8 104 422-526 106-209 (477)
92 3zyj_A Leucine-rich repeat-con 98.9 3.1E-09 1E-13 111.6 9.4 101 422-525 114-215 (440)
93 4glp_A Monocyte differentiatio 98.9 1.3E-09 4.4E-14 109.0 5.7 105 421-526 118-233 (310)
94 2z63_A TOLL-like receptor 4, v 98.9 2.6E-09 9E-14 115.4 8.5 103 422-525 423-526 (570)
95 2z63_A TOLL-like receptor 4, v 98.9 3E-09 1E-13 114.9 9.0 105 421-526 53-158 (570)
96 3oja_A Leucine-rich immune mol 98.9 1.8E-09 6.2E-14 115.1 6.9 104 421-526 59-178 (487)
97 1xku_A Decorin; proteoglycan, 98.9 4.5E-09 1.5E-13 105.8 9.1 84 422-506 194-277 (330)
98 4glp_A Monocyte differentiatio 98.9 7.7E-10 2.6E-14 110.6 3.3 101 421-526 170-281 (310)
99 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 2.4E-09 8.2E-14 116.0 7.1 104 420-526 353-459 (562)
100 1ziw_A TOLL-like receptor 3; i 98.8 4.1E-09 1.4E-13 116.7 9.1 106 421-526 74-180 (680)
101 3oja_A Leucine-rich immune mol 98.8 4.5E-09 1.6E-13 112.0 8.9 101 421-526 145-246 (487)
102 2ft3_A Biglycan; proteoglycan, 98.8 2.6E-09 9E-14 107.7 6.5 83 422-505 219-307 (332)
103 2xwt_C Thyrotropin receptor; s 98.8 2.9E-09 9.8E-14 102.1 6.5 101 422-526 82-188 (239)
104 2z80_A TOLL-like receptor 2, v 98.8 4.2E-09 1.5E-13 107.1 7.7 102 422-525 102-206 (353)
105 3cvr_A Invasion plasmid antige 98.8 3E-09 1E-13 115.3 6.4 87 422-525 82-168 (571)
106 3o53_A Protein LRIM1, AGAP0063 98.8 2.8E-09 9.4E-14 106.9 4.0 104 421-526 59-178 (317)
107 4ay9_X Follicle-stimulating ho 98.7 7.2E-09 2.4E-13 105.5 5.7 120 404-524 9-135 (350)
108 1h6t_A Internalin B; cell adhe 98.7 3E-08 1E-12 98.2 9.8 78 422-505 114-191 (291)
109 3o53_A Protein LRIM1, AGAP0063 98.7 1.7E-08 5.8E-13 101.1 7.7 101 421-526 145-246 (317)
110 1h6t_A Internalin B; cell adhe 98.7 4.9E-08 1.7E-12 96.6 9.8 97 421-526 91-187 (291)
111 1h6u_A Internalin H; cell adhe 98.7 6.5E-08 2.2E-12 96.6 10.5 97 421-526 86-182 (308)
112 1h6u_A Internalin H; cell adhe 98.7 5E-08 1.7E-12 97.4 9.5 97 421-526 130-226 (308)
113 1m9s_A Internalin B; cell inva 98.7 5.2E-08 1.8E-12 106.4 10.2 95 422-525 111-205 (605)
114 1xeu_A Internalin C; cellular 98.7 7.3E-08 2.5E-12 94.0 10.1 80 422-506 65-164 (263)
115 1m9s_A Internalin B; cell inva 98.6 5.6E-08 1.9E-12 106.2 9.9 97 421-526 88-184 (605)
116 4fmz_A Internalin; leucine ric 98.6 4.6E-08 1.6E-12 98.9 8.3 99 421-526 244-342 (347)
117 2ast_B S-phase kinase-associat 98.6 3.4E-09 1.2E-13 106.7 -0.1 84 422-505 95-182 (336)
118 1ds9_A Outer arm dynein; leuci 98.6 8E-10 2.7E-14 103.0 -5.1 100 421-526 49-149 (198)
119 2ca6_A RAN GTPase-activating p 98.6 7.2E-09 2.5E-13 106.7 1.5 104 422-525 189-311 (386)
120 1ds9_A Outer arm dynein; leuci 98.6 7.2E-10 2.5E-14 103.3 -5.6 104 421-527 71-184 (198)
121 3cvr_A Invasion plasmid antige 98.6 7.9E-08 2.7E-12 104.1 9.5 88 421-517 161-255 (571)
122 3bz5_A Internalin-J, INLJ; leu 98.6 1.3E-07 4.4E-12 99.8 10.1 94 421-527 65-158 (457)
123 2ast_B S-phase kinase-associat 98.6 1.4E-08 4.7E-13 102.2 2.3 105 421-527 71-178 (336)
124 1xeu_A Internalin C; cellular 98.6 1.5E-07 5.1E-12 91.7 9.5 96 422-525 43-158 (263)
125 3goz_A Leucine-rich repeat-con 98.6 1.7E-08 5.7E-13 103.2 2.6 106 422-527 53-177 (362)
126 1o6v_A Internalin A; bacterial 98.5 1.4E-07 4.8E-12 99.7 9.2 95 422-525 289-383 (466)
127 4fmz_A Internalin; leucine ric 98.5 2.2E-07 7.5E-12 93.8 9.4 100 421-527 222-321 (347)
128 3goz_A Leucine-rich repeat-con 98.5 4.5E-08 1.5E-12 100.0 4.0 106 422-527 24-148 (362)
129 1o6v_A Internalin A; bacterial 98.5 2.1E-07 7E-12 98.3 9.1 97 421-526 266-362 (466)
130 2ca6_A RAN GTPase-activating p 98.5 2.3E-08 7.8E-13 102.9 1.2 105 422-526 62-196 (386)
131 1jl5_A Outer protein YOPM; leu 98.4 4.4E-07 1.5E-11 95.6 9.5 92 422-526 155-246 (454)
132 3rw6_A Nuclear RNA export fact 98.4 6.2E-08 2.1E-12 94.5 2.4 86 441-528 167-262 (267)
133 3bz5_A Internalin-J, INLJ; leu 98.4 2.8E-07 9.7E-12 97.2 7.3 84 422-510 214-304 (457)
134 3g06_A SSPH2 (leucine-rich rep 98.4 2.7E-07 9.4E-12 101.0 7.4 86 422-516 223-308 (622)
135 1jl5_A Outer protein YOPM; leu 98.4 1.9E-07 6.5E-12 98.5 5.8 87 421-515 318-421 (454)
136 3g06_A SSPH2 (leucine-rich rep 98.3 1.7E-06 5.7E-11 94.7 10.0 91 422-526 203-293 (622)
137 4ay9_X Follicle-stimulating ho 98.2 1.5E-06 5E-11 88.2 7.3 99 424-526 13-113 (350)
138 1z7x_W Ribonuclease inhibitor; 98.1 3.1E-07 1.1E-11 96.4 -1.2 82 444-526 142-236 (461)
139 3rw6_A Nuclear RNA export fact 98.1 1.5E-06 5.2E-11 84.6 3.7 77 421-499 171-258 (267)
140 1z7x_W Ribonuclease inhibitor; 98.0 5.1E-07 1.7E-11 94.7 -0.6 87 421-507 314-413 (461)
141 3un9_A NLR family member X1; l 97.9 2.5E-06 8.5E-11 87.5 1.6 84 422-505 128-224 (372)
142 3sb4_A Hypothetical leucine ri 97.8 2.3E-05 7.8E-10 78.6 6.6 99 422-523 228-327 (329)
143 1io0_A Tropomodulin; LRR prote 97.7 8.6E-06 3E-10 74.8 1.1 83 422-504 67-163 (185)
144 3ogk_B Coronatine-insensitive 97.7 6E-06 2.1E-10 89.4 -0.2 86 422-507 438-528 (592)
145 3un9_A NLR family member X1; l 97.6 9.4E-06 3.2E-10 83.1 0.2 93 422-514 157-261 (372)
146 3ogk_B Coronatine-insensitive 97.6 1.2E-05 4.1E-10 87.0 0.4 103 421-524 193-325 (592)
147 2p1m_B Transport inhibitor res 97.4 1.6E-05 5.5E-10 86.0 -1.5 83 422-505 434-519 (594)
148 2p1m_B Transport inhibitor res 97.3 3.4E-05 1.2E-09 83.4 0.6 61 422-482 107-170 (594)
149 1io0_A Tropomodulin; LRR prote 97.2 4.9E-05 1.7E-09 69.7 -0.2 105 422-526 38-160 (185)
150 3sb4_A Hypothetical leucine ri 97.1 0.00074 2.5E-08 67.4 7.1 79 443-524 225-304 (329)
151 3e4g_A ATP synthase subunit S, 96.9 0.00033 1.1E-08 63.4 2.2 84 420-503 61-150 (176)
152 3rfe_A Platelet glycoprotein I 96.4 0.0056 1.9E-07 52.4 6.5 56 424-481 12-68 (130)
153 2ra8_A Uncharacterized protein 96.3 0.00067 2.3E-08 69.0 0.2 39 467-505 278-320 (362)
154 2ra8_A Uncharacterized protein 96.1 0.0026 9E-08 64.5 3.2 105 422-526 195-316 (362)
155 4fdw_A Leucine rich hypothetic 95.7 0.013 4.5E-07 60.2 6.6 99 422-524 273-377 (401)
156 3rfe_A Platelet glycoprotein I 95.7 0.018 6.2E-07 49.1 6.3 56 448-505 12-68 (130)
157 3e4g_A ATP synthase subunit S, 95.5 0.0049 1.7E-07 55.7 2.0 84 444-528 61-150 (176)
158 4fdw_A Leucine rich hypothetic 95.4 0.022 7.5E-07 58.5 7.1 98 423-525 251-353 (401)
159 1pgv_A TMD-1, tropomodulin TMD 94.7 0.0077 2.6E-07 55.4 1.0 36 422-457 72-111 (197)
160 4h09_A Hypothetical leucine ri 90.3 0.44 1.5E-05 47.8 6.9 78 422-502 265-343 (379)
161 4gt6_A Cell surface protein; l 89.6 1.1 3.7E-05 45.3 9.2 78 422-503 290-368 (394)
162 1pgv_A TMD-1, tropomodulin TMD 87.7 0.22 7.5E-06 45.6 2.2 106 421-526 42-166 (197)
163 4fs7_A Uncharacterized protein 87.1 0.85 2.9E-05 46.1 6.5 78 422-502 299-376 (394)
164 2w3j_A Carbohydrate binding mo 87.0 13 0.00043 31.8 13.0 90 82-177 38-131 (145)
165 4fs7_A Uncharacterized protein 86.6 0.75 2.6E-05 46.5 5.8 84 438-525 291-374 (394)
166 4gt6_A Cell surface protein; l 86.3 1.4 4.9E-05 44.4 7.7 83 439-525 283-365 (394)
167 2vzp_A Aocbm35, EXO-beta-D-glu 83.6 4.3 0.00015 33.8 8.2 40 269-313 40-79 (127)
168 2w47_A Lipolytic enzyme, G-D-S 82.1 5 0.00017 34.3 8.2 85 269-362 41-129 (144)
169 4h09_A Hypothetical leucine ri 81.9 2.7 9.4E-05 41.8 7.5 99 422-524 242-340 (379)
170 2wz8_A Cellulosome protein doc 81.1 18 0.00062 31.3 11.6 90 85-176 49-150 (156)
171 2w3j_A Carbohydrate binding mo 80.2 3.2 0.00011 35.7 6.2 39 269-312 40-78 (145)
172 2w47_A Lipolytic enzyme, G-D-S 79.1 28 0.00096 29.4 14.1 90 82-177 39-133 (144)
173 2w87_A Esterase D, XYL-CBM35; 75.9 35 0.0012 28.7 11.8 87 82-174 38-130 (139)
174 2vzp_A Aocbm35, EXO-beta-D-glu 73.6 36 0.0012 27.9 12.8 86 81-172 37-127 (127)
175 2w87_A Esterase D, XYL-CBM35; 70.9 10 0.00036 32.1 7.0 39 269-312 40-78 (139)
176 2o14_A Hypothetical protein YX 67.1 39 0.0013 33.6 11.5 78 87-177 78-157 (375)
177 2wz8_A Cellulosome protein doc 60.9 17 0.00058 31.5 6.4 43 269-311 48-96 (156)
178 2bgo_A Endo-B1,4-mannanase 5C; 54.5 98 0.0033 26.1 10.9 90 82-179 35-126 (140)
179 2y7l_A NT_ALS9-2, agglutinin-l 27.0 79 0.0027 30.5 5.4 130 71-226 168-299 (312)
180 4d8m_A Pesticidal crystal prot 23.9 2.5E+02 0.0085 29.6 8.9 83 86-174 489-584 (587)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.93 E-value=3.1e-27 Score=217.64 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=113.8
Q ss_pred EEEeeecCCCCCCCCcCCCCCCCCCCCCcccCCCCCCCCCccccccccceecCCCCCCCChHHHHHHhhccCCCCCCeEE
Q 009603 193 RTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQY 272 (531)
Q Consensus 193 ~~~~Rin~G~~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~l~~ 272 (531)
+++|||||||+.. .| .. +|.|.+|..+...+... .....+.. ...+.+|..||||||.+.. +++|
T Consensus 5 ~~~~~INcGg~~~---~d----~~--gr~w~~D~~~~~~g~~~-~~~~~~~~--~~~~~~~~~lY~TaR~~~~---~~tY 69 (174)
T 2jwp_A 5 KVIWAVNAGGESH---VD----VH--GIHYRKDPLEGRVGRAS-DYGMKLPI--LRSNPEDQVLYQTERYNED---SFGY 69 (174)
T ss_dssp HEEEEEEETSSSE---EE----TT--TEEECSSCSSTTCCCCC-CCCTTSCC--SSSCHHHHHTTTCCCCCCS---CEEE
T ss_pred cEEEEEECCCCCc---cC----CC--CCEEcCCcCcccCCccc-ccccceEe--cccCCCCchhhhhhccCCC---CeEE
Confidence 5789999999753 22 22 68888776432111100 00011111 1123468899999999765 4999
Q ss_pred EEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeccCCceeeecCCceeeEEEEEEee-------------ecC
Q 009603 273 TMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVA-------------VNG 339 (531)
Q Consensus 273 ~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~-------------~~~ 339 (531)
.|+++++|+|+|||||||+.. .+.++|+|||+|||++++++||+.+++|+ ..++++++.+. +.+
T Consensus 70 ~f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~~~~~~~~~v~~~~l~i~~~~~~~~ 146 (174)
T 2jwp_A 70 DIPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIKKGKLSVQGEVSTFT 146 (174)
T ss_dssp EEECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSS-SSCEEEEEEEEEETTEEEETTEEEECC
T ss_pred EEEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCC-CeeEEEEEEEEEecCceeeeeeecccC
Confidence 999998899999999999975 45889999999999999999999988876 46777777665 356
Q ss_pred ceEEEEEccCCCchhhhhhHhhhhh
Q 009603 340 RTLTVTLHPKGGSHAIINAIEVFEI 364 (531)
Q Consensus 340 ~~l~i~~~p~~~~~p~lnalei~~~ 364 (531)
++|+|+|.|.....|+||||||++.
T Consensus 147 g~L~I~f~p~~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 147 GKLSVEFVKGYYDNPKVCALFIMKG 171 (174)
T ss_dssp SEEEEEEECSSSCSSSEEEEEEESS
T ss_pred CeEEEEEeccCCCCcEEEEEEEEeC
Confidence 7899999987666799999999864
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.87 E-value=1.7e-21 Score=179.23 Aligned_cols=141 Identities=17% Similarity=0.158 Sum_probs=107.4
Q ss_pred CcEEEccCCCCCCcCCCCCceeeccCccc-CCccccc------CCC-CCCCCCcceeeccCCCCCCcceEEeeecCCcee
Q 009603 26 FAMRISCGARQNIHSPPTNTLWFKDFAYT-GGIPANA------TRP-SFITPPLKTLRYFPLSEGPENCYIINRVPKGHY 97 (531)
Q Consensus 26 ~~i~IdCG~~~~~~~~~~g~~w~~D~~~~-~~~~~~~------~~~-~~~~~~y~t~R~F~~~~g~~~cY~~~~~~~g~y 97 (531)
..++||||++.. .|..||+|.+|..|. .|..... ... ..++.+|+|+|+|+. ..+|.||+.++|+|
T Consensus 6 ~~~~INcGg~~~--~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y 79 (174)
T 2jwp_A 6 VIWAVNAGGESH--VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEY 79 (174)
T ss_dssp EEEEEEETSSSE--EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEE
T ss_pred EEEEEECCCCCc--cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEE
Confidence 358999998763 345799999998764 2321111 100 012348999999984 48999999889999
Q ss_pred EEEEEEecccCCCCCCCCcEEEEEcCeeEEEeecCCCCC-----ccceEEEEEEEe-------------cCCeEEEEEee
Q 009603 98 NVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDH-----DDRAFAEALVFL-------------RDGTVSICFHS 159 (531)
Q Consensus 98 lvRl~F~~~~y~~~~~~~~F~v~~~~~~w~~v~~~~~~~-----~~~~~~E~~~~~-------------~~~~l~v~f~~ 159 (531)
+|||||.+..+.. ...+.|||+++| .+++++|+.. ..++.||+.+.+ .+++|.|+|.|
T Consensus 80 ~VrLhF~ei~~~~-~~~rvFdV~ing---~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p 155 (174)
T 2jwp_A 80 VLVLKFAEVYFAQ-SQQKVFDVRVNG---HTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVK 155 (174)
T ss_dssp EEEEEEECCSCCC-SSSSCEEEEETT---EEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEEC
T ss_pred EEEEEEeccccCC-CCCeEeEEEECC---EEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEec
Confidence 9999999997754 467799999999 8899888752 347888888763 56789999998
Q ss_pred cCCCCCcEEeEEEEEcC
Q 009603 160 TGHGDPAILSLEILQVD 176 (531)
Q Consensus 160 ~~~~~pfIsaiEl~~l~ 176 (531)
.....||||||||++.+
T Consensus 156 ~~~~~a~inaIEI~~~~ 172 (174)
T 2jwp_A 156 GYYDNPKVCALFIMKGT 172 (174)
T ss_dssp SSSCSSSEEEEEEESSC
T ss_pred cCCCCcEEEEEEEEeCc
Confidence 65678999999999754
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=6.9e-18 Score=169.99 Aligned_cols=150 Identities=26% Similarity=0.509 Sum_probs=109.7
Q ss_pred CCchHHHHHHHHHHhhcCCCCC-CCCCC--CCCCCCCCCCCccccccCCCCcceEEEEEEccCCCCcc--cCcccccCCC
Q 009603 370 KTLPEEVRALQVLKNSLDLPHR-FGWNG--DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRG--FLPNGISKLR 444 (531)
Q Consensus 370 ~~~~~~~~aL~~~k~~~~~~~~-~~W~~--~~C~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g--~~p~~l~~L~ 444 (531)
.|.++|++||++||+.+.++.. .+|+. ++|. +.|.||.|+... ...+|+.|+|++|++.| .+|..+.+++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~~~~~~~l~~l~ 76 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLP 76 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCC--CCceEEEEECCCCCccCCcccChhHhCCC
Confidence 4678999999999999976542 47863 4552 359999997432 11358888888888888 7888888888
Q ss_pred CCCEEEccC-CccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceee
Q 009603 445 HLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFK 523 (531)
Q Consensus 445 ~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~ 523 (531)
+|+.|+|++ |.+.+.+|..++++++|++|+|++|++++.+|..+.++++|++|+|++|.++|.+|..+.. +.+++.|+
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~ 155 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGIT 155 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEE
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEE
Confidence 888888884 7787777777777777777777777777777777777777777777777777666666644 34566666
Q ss_pred ec
Q 009603 524 YV 525 (531)
Q Consensus 524 l~ 525 (531)
++
T Consensus 156 L~ 157 (313)
T 1ogq_A 156 FD 157 (313)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=4.4e-17 Score=184.76 Aligned_cols=148 Identities=20% Similarity=0.313 Sum_probs=125.4
Q ss_pred CchHHHHHHHHHHhhcCCCCCCCCCCCC----CCCCCCCC------------CccccccCCCCcceEEEEEEccCCCCcc
Q 009603 371 TLPEEVRALQVLKNSLDLPHRFGWNGDP----CVPQQHPW------------SGADCQFDRTSHKWVIDGLGLDNQGLRG 434 (531)
Q Consensus 371 ~~~~~~~aL~~~k~~~~~~~~~~W~~~~----C~~~~~~w------------~gv~C~~~~~~~~~~l~~L~L~~n~l~g 434 (531)
+...|+.||++||+++.++ +|+... +.|+.|.| .||.|+.. .+|+.|+|+++++.|
T Consensus 266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAKG 337 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCEE
T ss_pred cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecCC-----CCEEEEECccCCCCC
Confidence 3457999999999999765 786432 22334689 99999742 369999999999999
Q ss_pred cCcccccCCCCCCEEEc-cCCccCcc------------------------------------------------------
Q 009603 435 FLPNGISKLRHLQSINL-SGNSIRGA------------------------------------------------------ 459 (531)
Q Consensus 435 ~~p~~l~~L~~L~~L~L-s~N~l~g~------------------------------------------------------ 459 (531)
.+|+.+++|++|+.|+| ++|.++|.
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 99999999999999999 88766555
Q ss_pred ----------------------CCccccCCCCCCEEecCCCcCCC-----------------CCccccc--CCCCCCEEe
Q 009603 460 ----------------------IPSSLGTIASLEVLDLSYNFFNG-----------------SIPESLG--QLTALRRLN 498 (531)
Q Consensus 460 ----------------------ip~~l~~l~~L~~L~Ls~N~l~g-----------------~iP~~l~--~l~~L~~L~ 498 (531)
+|..|++|++|+.|+|++|+|+| .+|..++ ++++|+.|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 88899999999999999999998 4999988 999999999
Q ss_pred ccCCCCCCCCChhhhhhccccceeeeccc
Q 009603 499 LNGNTLSGRVPAALGGRLLHRASFKYVWA 527 (531)
Q Consensus 499 L~~N~l~g~iP~~~~~~~~~l~~l~l~~~ 527 (531)
|++|++.|.+|..+++ +.+|+.|++++.
T Consensus 498 Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N 525 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYD-LPELQSLNIACN 525 (876)
T ss_dssp EESCTTCCSCCGGGGG-CSSCCEEECTTC
T ss_pred CcCCCCCccChHHHhC-CCCCCEEECcCC
Confidence 9999999999988866 457889988753
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=2.7e-16 Score=173.58 Aligned_cols=145 Identities=19% Similarity=0.290 Sum_probs=119.8
Q ss_pred chHHHHHHHHHHhhcCCCCC----------CCCCCC-CCCCCCCCC---CccccccCCCCcceEEEEEEccCCCCcccCc
Q 009603 372 LPEEVRALQVLKNSLDLPHR----------FGWNGD-PCVPQQHPW---SGADCQFDRTSHKWVIDGLGLDNQGLRGFLP 437 (531)
Q Consensus 372 ~~~~~~aL~~~k~~~~~~~~----------~~W~~~-~C~~~~~~w---~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p 437 (531)
...|+.||.+++..+..+.. .+|+.+ +| |.| .||.|+.. ++|+.|+|++++++|.+|
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc----ccccCCCCeEEcCC-----CCEEEEEecCcccCCcCC
Confidence 34689999999998765421 257532 22 469 99999743 369999999999999999
Q ss_pred ccccCCCCCCEEEccCCc--------------------------------------------------------------
Q 009603 438 NGISKLRHLQSINLSGNS-------------------------------------------------------------- 455 (531)
Q Consensus 438 ~~l~~L~~L~~L~Ls~N~-------------------------------------------------------------- 455 (531)
+.+++|++|+.|+|++|.
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 999999999999999883
Q ss_pred ----------------cCccCCccccCCCCCCEEecCCCcCCCC-----------------Cccccc--CCCCCCEEecc
Q 009603 456 ----------------IRGAIPSSLGTIASLEVLDLSYNFFNGS-----------------IPESLG--QLTALRRLNLN 500 (531)
Q Consensus 456 ----------------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-----------------iP~~l~--~l~~L~~L~L~ 500 (531)
++| +|..++++++|+.|+|++|+|+|. +|..++ ++++|++|+|+
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 445 888899999999999999999986 999988 99999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeeccc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVWA 527 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~~ 527 (531)
+|.+.|.+|..+++ +.+++.|++++.
T Consensus 258 ~n~l~~~~p~~l~~-l~~L~~L~Ls~n 283 (636)
T 4eco_A 258 NCPNLTKLPTFLKA-LPEMQLINVACN 283 (636)
T ss_dssp CCTTCSSCCTTTTT-CSSCCEEECTTC
T ss_pred CCcCCccChHHHhc-CCCCCEEECcCC
Confidence 99999999988866 457888888754
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.54 E-value=5.4e-15 Score=166.77 Aligned_cols=148 Identities=24% Similarity=0.301 Sum_probs=111.4
Q ss_pred cCCchHHHHHHHHHHhhcCCCC-CCCCC-CCCCCCCCCCCCccccccCCCCcceEEEEEEccCCCCccc---Cc------
Q 009603 369 SKTLPEEVRALQVLKNSLDLPH-RFGWN-GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGF---LP------ 437 (531)
Q Consensus 369 ~~~~~~~~~aL~~~k~~~~~~~-~~~W~-~~~C~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~---~p------ 437 (531)
....++|++||++||+.+.+|. ..+|+ +..| |.|.||.|+ . ++|+.|+|+++++.|. +|
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~----C~w~gv~C~-~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L 76 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKNLLPDWSSNKNP----CTFDGVTCR-D-----DKVTSIDLSSKPLNVGFSAVSSSLLSL 76 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG----GGSTTEEEE-T-----TEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred ccCCHHHHHHHHHHHhhCCCcccccCCCCCCCC----cCCcceEEC-C-----CcEEEEECCCCCcCCccCccChhHhcc
Confidence 3446789999999999998664 24796 3344 379999997 2 3699999999999987 44
Q ss_pred -----------------ccccCCCCCCEEEccCCccCccCCc--cccCCCCCCEEecCCCcCCCCCcccc-cCCCCCCEE
Q 009603 438 -----------------NGISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRL 497 (531)
Q Consensus 438 -----------------~~l~~L~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L 497 (531)
..++++++|++|+|++|.++|.+|. .+++|++|++|+|++|.+.+.+|..+ .++++|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 4566777888888888888887777 78888888888888888887777665 677888888
Q ss_pred eccCCCCCCCCChhh--hhhccccceeeecc
Q 009603 498 NLNGNTLSGRVPAAL--GGRLLHRASFKYVW 526 (531)
Q Consensus 498 ~L~~N~l~g~iP~~~--~~~~~~l~~l~l~~ 526 (531)
+|++|++++..|..+ ...+.+++.|++++
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 187 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISG 187 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCS
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCC
Confidence 888888887776652 23455677777764
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.49 E-value=7.7e-15 Score=148.67 Aligned_cols=154 Identities=21% Similarity=0.323 Sum_probs=99.2
Q ss_pred cCCchHHHHHHHHHHhhcC-CCCC--CCCC-CCCCCCCCCCCCccccccCCC----CcceEEEEEEccCCCCcccCcccc
Q 009603 369 SKTLPEEVRALQVLKNSLD-LPHR--FGWN-GDPCVPQQHPWSGADCQFDRT----SHKWVIDGLGLDNQGLRGFLPNGI 440 (531)
Q Consensus 369 ~~~~~~~~~aL~~~k~~~~-~~~~--~~W~-~~~C~~~~~~w~gv~C~~~~~----~~~~~l~~L~L~~n~l~g~~p~~l 440 (531)
.....+|.+||++||..+. ++.. ..|. ...|.+..|.|.|+.|..... ....+++.|+|++|++. .+|+.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 4456789999999999773 3322 2452 112233345799999952100 00123667777777776 666667
Q ss_pred cCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhh------
Q 009603 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG------ 514 (531)
Q Consensus 441 ~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~------ 514 (531)
.+|++|+.|+|++|.++ .+|..++++++|+.|+|++|+++ .+|..++++++|++|+|++|++.|.+|..++.
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 77777777777777777 77777777777777777777777 66777777777777777777666677665532
Q ss_pred --hccccceeeec
Q 009603 515 --RLLHRASFKYV 525 (531)
Q Consensus 515 --~~~~l~~l~l~ 525 (531)
.+.+++.|+++
T Consensus 179 ~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 179 HQGLVNLQSLRLE 191 (328)
T ss_dssp EEESTTCCEEEEE
T ss_pred hccCCCCCEEECc
Confidence 23455555554
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=3.7e-13 Score=129.02 Aligned_cols=120 Identities=20% Similarity=0.259 Sum_probs=95.2
Q ss_pred CCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCc
Q 009603 405 PWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 479 (531)
Q Consensus 405 ~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 479 (531)
.|.+|.|+...... ...++.|+|++|.+++..|..+.++++|+.|+|++|.+....+..|..+++|+.|+|++|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 69999997543221 1347889999999998888889999999999999999975555667889999999999999
Q ss_pred CCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 480 l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|++..+..+..+++|+.|+|++|+|+ .+|..+.. +.+++.|+++.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~ 144 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQ 144 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCS
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCC
Confidence 98666667788888888888888888 78877744 45677777763
No 9
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=2.7e-13 Score=126.33 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=101.9
Q ss_pred CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcc-cccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCC
Q 009603 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 477 (531)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 477 (531)
|.|..+.|+...... ...++.|+|++|.+++..+. .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 568888887543221 12578999999999887765 489999999999999999998899999999999999999
Q ss_pred CcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603 478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 478 N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+|++..|..+.++++|++|+|++|++++.+|..+.. +.+++.|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~ 134 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLA 134 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc-CCCCCEEEeC
Confidence 9999888888999999999999999999887877755 4578888876
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=5.4e-13 Score=122.31 Aligned_cols=122 Identities=21% Similarity=0.239 Sum_probs=102.3
Q ss_pred CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (531)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (531)
|.|.++.|+...... ...++.|+|++|++++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 579999997543221 135789999999999877778899999999999999999776677899999999999999
Q ss_pred cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
++++..+..+.++++|+.|+|++|+++ .+|......+.+++.|++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecC
Confidence 999777777899999999999999999 67776656567888888863
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=5.8e-13 Score=124.29 Aligned_cols=120 Identities=27% Similarity=0.318 Sum_probs=102.3
Q ss_pred CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (531)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (531)
|.|..+.|+...... ...++.|+|++|.++ .+|..+.++++|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 567778886543221 135889999999998 67789999999999999999999888888999999999999999
Q ss_pred cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|++..|..|.++++|+.|+|++|+++ .+|......+.++..|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeC
Confidence 999888889999999999999999999 6776655556788888887
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.39 E-value=1.7e-13 Score=137.83 Aligned_cols=106 Identities=30% Similarity=0.511 Sum_probs=96.9
Q ss_pred EEEEEEccC-CCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
.++.|+|++ |++.+.+|..+.++++|++|+|++|.+++.+|..+.++++|+.|+|++|++++.+|..+.++++|++|+|
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 478899995 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhhhhhccccceeeecc
Q 009603 500 NGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 500 ~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
++|+++|.+|..++.+..+++.|++++
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcC
Confidence 999999999999988776788888764
No 13
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.5e-12 Score=122.59 Aligned_cols=121 Identities=21% Similarity=0.292 Sum_probs=81.5
Q ss_pred CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (531)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (531)
|.|.++.|+...... ...++.|+|++|++++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 578888887533211 124677888888887666666777788888888888877555555677777777777777
Q ss_pred cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
++++..+..+.++++|++|+|++|+++ .+|......+.+++.|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECC
Confidence 777555555677777777777777777 3444433444566666665
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=2.4e-12 Score=122.62 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=75.7
Q ss_pred CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (531)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (531)
|.|..+.|....... ...++.|+|++|.+++..+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567778886433211 123667777777777666666777777777777777777666667777777777777777
Q ss_pred cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|+...+..|.++++|+.|+|++|++++..|..+.. +.+++.|+++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~ 136 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD-LHNLNLLSLY 136 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC-CCCCCEEECC
Confidence 776433344566666666666666666444444433 3455555554
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.33 E-value=7e-13 Score=149.47 Aligned_cols=91 Identities=35% Similarity=0.626 Sum_probs=87.4
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.++|.+|..+++|+.|+.|+|++|.++|.+|..+++|++|+.|||++|+++|.+|..++++++|++|+|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChh
Q 009603 501 GNTLSGRVPAA 511 (531)
Q Consensus 501 ~N~l~g~iP~~ 511 (531)
+|+++|.||..
T Consensus 713 ~N~l~g~iP~~ 723 (768)
T 3rgz_A 713 NNNLSGPIPEM 723 (768)
T ss_dssp SSEEEEECCSS
T ss_pred CCcccccCCCc
Confidence 99999999964
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=6e-12 Score=119.80 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=50.8
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
|+.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..|..+..+++|+.|+|++
T Consensus 59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 34444444444444444445555555555555555544444455555555555555555554455555555555555555
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|++++..|..+.. +.+++.|+++
T Consensus 139 N~l~~~~~~~~~~-l~~L~~L~L~ 161 (220)
T 2v70_A 139 NQITTVAPGAFDT-LHSLSTLNLL 161 (220)
T ss_dssp SCCCCBCTTTTTT-CTTCCEEECC
T ss_pred CcCCEECHHHhcC-CCCCCEEEec
Confidence 5555433443332 3344455443
No 17
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=5.8e-12 Score=114.93 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=90.0
Q ss_pred CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (531)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (531)
|.|+.+.|+...... ...++.|+|++|.|++..|..+.++++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 568888887543221 134788999999999998999999999999999999999777777899999999999999
Q ss_pred cCCCCCcccccCCCCCCEEeccCCCCCCCCC
Q 009603 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509 (531)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP 509 (531)
+|++..|..+.++++|+.|+|++|.+.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997666779999999999999999986654
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=1e-11 Score=118.11 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=54.5
Q ss_pred EEEEEccCCCCcccCc-ccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLP-NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p-~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
++.|+|++|.+++..+ ..+.++++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3455555555555433 234555555555555555555444455555555555555555555544555555555555555
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|++++..|..+.. +.+++.|+++
T Consensus 114 ~N~l~~~~~~~~~~-l~~L~~L~L~ 137 (220)
T 2v70_A 114 SNRITCVGNDSFIG-LSSVRLLSLY 137 (220)
T ss_dssp TSCCCCBCTTSSTT-CTTCSEEECT
T ss_pred CCcCCeECHhHcCC-CccCCEEECC
Confidence 55555444444432 3345555554
No 19
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.26 E-value=1.7e-11 Score=116.70 Aligned_cols=104 Identities=24% Similarity=0.286 Sum_probs=89.0
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..|..+.++++|+.|+|++|.++...+..|..+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 37889999999999889999999999999999999995555567889999999999999998888999999999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|++++..|..+ ..+.++..|++.
T Consensus 137 ~N~l~~~~~~~~-~~l~~L~~L~L~ 160 (220)
T 2v9t_B 137 DNKLQTIAKGTF-SPLRAIQTMHLA 160 (220)
T ss_dssp SSCCSCCCTTTT-TTCTTCCEEECC
T ss_pred CCcCCEECHHHH-hCCCCCCEEEeC
Confidence 999995444444 445678888876
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=2.6e-11 Score=117.61 Aligned_cols=103 Identities=22% Similarity=0.297 Sum_probs=48.8
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
|+.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|+|++..+..+..+++|+.|+|++
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence 44444444444444444444445555555555555444334444555555555555555533333445555555555555
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+++ .+|......+.+++.|+++
T Consensus 141 N~l~-~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 141 NQLQ-SIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcCC-ccCHHHcCcCcCCCEEECC
Confidence 5555 2333222223445555554
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.24 E-value=1.9e-11 Score=119.79 Aligned_cols=132 Identities=18% Similarity=0.231 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccC
Q 009603 392 FGWNGDPCVPQQHPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGT 466 (531)
Q Consensus 392 ~~W~~~~C~~~~~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~ 466 (531)
+.|.+..|.. ...|..+.|+...... +..++.|+|++|++++..+..+.++++|+.|+|++|.++...+..+..
T Consensus 5 C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~ 83 (270)
T 2o6q_A 5 CKKDGGVCSC-NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83 (270)
T ss_dssp BGGGTCSBEE-ETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS
T ss_pred CCCCCCCCEe-CCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC
Confidence 4677777632 2246667776433221 123677888888887766667777777777777777777444444566
Q ss_pred CCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603 467 IASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 467 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+++|+.|+|++|++++..+..+.++++|++|+|++|++++ +|......+.+++.|+++
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECC
Confidence 7777777777777765444555666666666666666663 333222334455555554
No 22
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=1.8e-11 Score=113.82 Aligned_cols=90 Identities=26% Similarity=0.352 Sum_probs=85.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.|++..|..+.++++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++.+|..+..+++|++|+|+
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 37899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCh
Q 009603 501 GNTLSGRVPA 510 (531)
Q Consensus 501 ~N~l~g~iP~ 510 (531)
+|.+.+..+-
T Consensus 135 ~N~l~c~c~l 144 (192)
T 1w8a_A 135 SNPFNCNCHL 144 (192)
T ss_dssp TCCBCCSGGG
T ss_pred CCCccCcCcc
Confidence 9999988763
No 23
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=6.1e-11 Score=108.07 Aligned_cols=99 Identities=24% Similarity=0.306 Sum_probs=85.5
Q ss_pred EEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCC
Q 009603 423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502 (531)
Q Consensus 423 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N 502 (531)
+.|++++|+|+. +|..+ .+.|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 479999999985 66655 389999999999999888999999999999999999999777777899999999999999
Q ss_pred CCCCCCChhhhhhccccceeeec
Q 009603 503 TLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 503 ~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|+ .+|......+.+++.|+++
T Consensus 89 ~l~-~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 89 QLK-SIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECC
T ss_pred ccC-EeCHHHhcCCCCCCEEEeC
Confidence 999 4665544556788888887
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.20 E-value=3.7e-11 Score=121.42 Aligned_cols=103 Identities=23% Similarity=0.280 Sum_probs=91.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++ +|+.+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++.+.+|..+.++++|+.|+|+
T Consensus 207 ~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 207 NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp TCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 37889999999996 56679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|++.|.+|+.++++ .++..+.+.
T Consensus 286 ~n~~~~~iP~~l~~L-~~L~~l~l~ 309 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQL-PANCIILVP 309 (328)
T ss_dssp TCTTCCCCCGGGGGS-CTTCEEECC
T ss_pred CCCchhhccHHHhhc-cCceEEeCC
Confidence 999999999998775 446666554
No 25
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=7.2e-11 Score=108.09 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=73.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.|++..|..+.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 47789999999998888888899999999999999986555567888999999999999986555568889999999999
Q ss_pred CCCCCCCCCh
Q 009603 501 GNTLSGRVPA 510 (531)
Q Consensus 501 ~N~l~g~iP~ 510 (531)
+|.+.. .|.
T Consensus 114 ~N~~~c-~~~ 122 (174)
T 2r9u_A 114 NNPWDC-ECR 122 (174)
T ss_dssp SSCBCT-TBG
T ss_pred CCCccc-ccc
Confidence 998884 444
No 26
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=5e-11 Score=114.10 Aligned_cols=102 Identities=21% Similarity=0.271 Sum_probs=70.5
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
|+.|+|++|.|+...+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+|+ .+|..+..+++|++|+|++
T Consensus 66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCC
Confidence 667777777776555556677777777777777777555556677777777777777777 6777777777777777777
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+|+ .+|......+.++..|++.
T Consensus 145 N~l~-~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 145 NQLK-SIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECT
T ss_pred CcCC-ccCHHHHhCCCCCCEEEee
Confidence 7777 4444433444566666665
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.19 E-value=5.5e-11 Score=115.22 Aligned_cols=105 Identities=23% Similarity=0.306 Sum_probs=90.2
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+|++..|..+..+++|++|+|+
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 48899999999998888889999999999999999997766778999999999999999997777789999999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|++++..|..+ ..+.++..|++..
T Consensus 164 ~N~l~~~~~~~~-~~l~~L~~L~l~~ 188 (251)
T 3m19_A 164 TNQLQSVPHGAF-DRLGKLQTITLFG 188 (251)
T ss_dssp SSCCSCCCTTTT-TTCTTCCEEECCS
T ss_pred CCcCCccCHHHH-hCCCCCCEEEeeC
Confidence 999995444444 4456788888863
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.18 E-value=1.7e-11 Score=129.01 Aligned_cols=89 Identities=22% Similarity=0.294 Sum_probs=55.2
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCC-ccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
.++.|+|++|.+++..|..+.++++|+.|+|++|.+.+.++ ..|..+++|++|+|++|++++..|..++++++|++|+|
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 46677777777776666666666666666666666655543 34566666666666666666555555555555555555
Q ss_pred cCCCCCCCCC
Q 009603 500 NGNTLSGRVP 509 (531)
Q Consensus 500 ~~N~l~g~iP 509 (531)
++|.+++.+|
T Consensus 111 ~~n~l~~~~~ 120 (455)
T 3v47_A 111 TQCNLDGAVL 120 (455)
T ss_dssp TTSCCBTHHH
T ss_pred CCCCCCcccc
Confidence 5555554333
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=7.5e-11 Score=110.77 Aligned_cols=103 Identities=24% Similarity=0.269 Sum_probs=52.3
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 44555555555544444445555555555555555544334445555555555555555544444455555555555555
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+++ .+|......+.+++.|++.
T Consensus 134 N~l~-~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 134 NQLK-SVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp SCCS-CCCTTTTTTCTTCCEEECC
T ss_pred Cccc-eeCHHHhccCCCccEEEec
Confidence 5555 2333322333445555444
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.18 E-value=3.4e-11 Score=131.56 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=86.8
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 47899999999998888889999999999999999997777788999999999999999986666778889999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|++++ +|+.....+.+|+.|++++
T Consensus 133 ~N~l~~-l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 133 ETNLAS-LENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp TSCCCC-STTCCCTTCTTCCEEECCS
T ss_pred CCcCCC-CChhhhhcCcccCeecccc
Confidence 998884 5544334456788888764
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=3.1e-11 Score=107.11 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=83.2
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCC-CcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~L 499 (531)
.++.|+|++|.+++. ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++. .|..+..+++|++|+|
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 478899999999876 7788899999999999999987888888899999999999999863 4478889999999999
Q ss_pred cCCCCCCCCC--hhhhhhccccceeeec
Q 009603 500 NGNTLSGRVP--AALGGRLLHRASFKYV 525 (531)
Q Consensus 500 ~~N~l~g~iP--~~~~~~~~~l~~l~l~ 525 (531)
++|.+++..+ ......+.+++.|+++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999985433 1344555677777764
No 32
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=7.5e-11 Score=107.98 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=85.2
Q ss_pred EEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCC
Q 009603 423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502 (531)
Q Consensus 423 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N 502 (531)
+.+++++|++. .+|..+. ++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 36899999995 6676664 89999999999999988999999999999999999999765566799999999999999
Q ss_pred CCCCCCChhhhhhccccceeeec
Q 009603 503 TLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 503 ~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|+ .+|......+.++..|++.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECC
T ss_pred ccc-eeCHHHhccccCCCEEEeC
Confidence 999 5676644556788888886
No 33
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.16 E-value=5.4e-11 Score=121.83 Aligned_cols=102 Identities=22% Similarity=0.189 Sum_probs=51.8
Q ss_pred CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCccccc-CCCCCCEEEccCCccCccCCccccCCCCCCEEecCC
Q 009603 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 477 (531)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 477 (531)
|.+..+.|....... ...++.|+|++|.|++..+..+. ++++|+.|+|++|.+++..|..|..+++|+.|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666675432211 11244566666666555544444 555555555555555544444455555555555555
Q ss_pred CcCCCCCcccccCCCCCCEEeccCCCCC
Q 009603 478 NFFNGSIPESLGQLTALRRLNLNGNTLS 505 (531)
Q Consensus 478 N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 505 (531)
|+|++..+..|.++++|+.|+|++|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence 5555433344444455555555555444
No 34
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=2.4e-11 Score=107.82 Aligned_cols=103 Identities=22% Similarity=0.247 Sum_probs=90.7
Q ss_pred EEEEEEccCCCCc-ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
.++.|++++|.++ +.+|..+..+++|+.|+|++|.+++. ..++.+++|+.|+|++|++++.+|..+.++++|++|+|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4789999999999 88999999999999999999999966 78999999999999999999889998888999999999
Q ss_pred cCCCCCCC-CChhhhhhccccceeeecc
Q 009603 500 NGNTLSGR-VPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 500 ~~N~l~g~-iP~~~~~~~~~l~~l~l~~ 526 (531)
++|.+++. .|..+.. +.+++.|++++
T Consensus 96 s~N~i~~~~~~~~~~~-l~~L~~L~l~~ 122 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKK-LENLKSLDLFN 122 (149)
T ss_dssp TTSCCCSHHHHGGGGG-CTTCCEEECTT
T ss_pred CCCcCCChHHHHHHhh-CCCCCEEeCcC
Confidence 99999952 2355544 56789998874
No 35
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=4.7e-11 Score=108.17 Aligned_cols=105 Identities=24% Similarity=0.235 Sum_probs=88.8
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCC-CcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~L 499 (531)
.++.|+|++|.+++. ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++. .+..+..+++|+.|+|
T Consensus 50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 488999999999876 7899999999999999999988888888899999999999999953 2278999999999999
Q ss_pred cCCCCCCCCCh---hhhhhccccceeeecccc
Q 009603 500 NGNTLSGRVPA---ALGGRLLHRASFKYVWAM 528 (531)
Q Consensus 500 ~~N~l~g~iP~---~~~~~~~~l~~l~l~~~~ 528 (531)
++|.++ .+|. .....+.+++.|++....
T Consensus 128 ~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 128 FNCEVT-NLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CSSGGG-TSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eCCcCc-chHHHHHHHHHhCccCcEecCCCCC
Confidence 999999 4555 344556688888887543
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.14 E-value=1.5e-11 Score=135.60 Aligned_cols=95 Identities=12% Similarity=0.144 Sum_probs=85.2
Q ss_pred CCcccCcccccCCCCCCEEEccCCccCcc-----------------CCcccc--CCCCCCEEecCCCcCCCCCcccccCC
Q 009603 431 GLRGFLPNGISKLRHLQSINLSGNSIRGA-----------------IPSSLG--TIASLEVLDLSYNFFNGSIPESLGQL 491 (531)
Q Consensus 431 ~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-----------------ip~~l~--~l~~L~~L~Ls~N~l~g~iP~~l~~l 491 (531)
+++| +|..+++|++|+.|+|++|.++|. +|..++ +|++|+.|+|++|++.|.+|..++++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3445 788899999999999999999986 999999 99999999999999999999999999
Q ss_pred CCCCEEeccCCC-CCC-CCChhhhhh-----ccccceeeecc
Q 009603 492 TALRRLNLNGNT-LSG-RVPAALGGR-----LLHRASFKYVW 526 (531)
Q Consensus 492 ~~L~~L~L~~N~-l~g-~iP~~~~~~-----~~~l~~l~l~~ 526 (531)
++|++|+|++|+ ++| .+|..++.+ +.+++.|++++
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 999999999998 998 899998876 37788888874
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.14 E-value=5.9e-11 Score=128.01 Aligned_cols=105 Identities=23% Similarity=0.258 Sum_probs=89.0
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..|..+.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..++++++|++|+|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 58899999999998888889999999999999999998888889999999999999999998777778999999999999
Q ss_pred CCCCCC-CCChhhhhhccccceeeecc
Q 009603 501 GNTLSG-RVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g-~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|.+++ .+|..++. +.+++.|+++.
T Consensus 107 ~n~l~~~~~~~~~~~-l~~L~~L~L~~ 132 (549)
T 2z81_A 107 GNPYQTLGVTSLFPN-LTNLQTLRIGN 132 (549)
T ss_dssp TCCCSSSCSSCSCTT-CTTCCEEEEEE
T ss_pred CCcccccchhhhhhc-cCCccEEECCC
Confidence 999885 35555544 45677777764
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.14 E-value=7.2e-11 Score=120.27 Aligned_cols=105 Identities=26% Similarity=0.334 Sum_probs=89.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..+.++++|+.|+|++|++++..+..+.++++|++|+|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 58899999999998777789999999999999999998888889999999999999999996555558899999999999
Q ss_pred CCCCCCCCCh-hhhhhccccceeeecc
Q 009603 501 GNTLSGRVPA-ALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~-~~~~~~~~l~~l~l~~ 526 (531)
+|+++ .+|. .....+.+++.|+++.
T Consensus 133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp TCCCS-SSCSSCSCTTCTTCCEEEEEE
T ss_pred CCCCc-ccCchhhhccCCCCcEEECCC
Confidence 99998 6776 4445566788888875
No 39
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=9.3e-11 Score=120.07 Aligned_cols=83 Identities=27% Similarity=0.278 Sum_probs=40.1
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCccc-c---cCCCCCCEE
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-L---GQLTALRRL 497 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-l---~~l~~L~~L 497 (531)
|+.|+|++|.|++..+..+.+|++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++ +|.. + ..+++|+.|
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEE
Confidence 4445555555554444445555555555555555554444455555555555555555552 3322 2 334555555
Q ss_pred eccCCCCC
Q 009603 498 NLNGNTLS 505 (531)
Q Consensus 498 ~L~~N~l~ 505 (531)
+|++|+|+
T Consensus 169 ~L~~N~l~ 176 (361)
T 2xot_A 169 DLSSNKLK 176 (361)
T ss_dssp ECCSSCCC
T ss_pred ECCCCCCC
Confidence 55555555
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.13 E-value=1.3e-10 Score=122.66 Aligned_cols=121 Identities=22% Similarity=0.244 Sum_probs=99.8
Q ss_pred CCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCc
Q 009603 405 PWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 479 (531)
Q Consensus 405 ~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 479 (531)
.|..+.|....... ...++.|+|++|++++..+..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 35677786433211 1357899999999999999999999999999999999998888999999999999999999
Q ss_pred CCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 480 l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+++..+..+..+++|++|+|++|.++ .+|......+.+++.|++..
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCC
Confidence 99766677999999999999999998 56665555566777777764
No 41
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.1e-10 Score=118.49 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=66.3
Q ss_pred CCCCccccccC-CCC------cceEEEEEEccC-CCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEec
Q 009603 404 HPWSGADCQFD-RTS------HKWVIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDL 475 (531)
Q Consensus 404 ~~w~gv~C~~~-~~~------~~~~l~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L 475 (531)
|.|..+.|+.. ... ....|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|+.|+|
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 46777778643 111 112366777775 7777666667777777777777777777766667777777777777
Q ss_pred CCCcCCCCCcccccCCCCCCEEeccCCCCCC
Q 009603 476 SYNFFNGSIPESLGQLTALRRLNLNGNTLSG 506 (531)
Q Consensus 476 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 506 (531)
++|+|++..|..+..++ |+.|+|.+|.|..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 77777744444444444 7777777777763
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.12 E-value=1.8e-10 Score=113.09 Aligned_cols=105 Identities=24% Similarity=0.259 Sum_probs=87.8
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..++.+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 37889999999998877778999999999999999997777778899999999999999997777778899999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|++++..|..+ ..+.+++.|++..
T Consensus 190 ~N~l~~~~~~~~-~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 190 QNQLKSVPDGVF-DRLTSLQYIWLHD 214 (272)
T ss_dssp SSCCSCCCTTTT-TTCTTCCEEECCS
T ss_pred CCcCCccCHHHH-hCCcCCCEEEccC
Confidence 999996555444 4456788888763
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.11 E-value=2.1e-10 Score=112.61 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=80.7
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..++.+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 47899999999998877778999999999999999997777778999999999999999998888788999999999999
Q ss_pred CCCCCCCCCh
Q 009603 501 GNTLSGRVPA 510 (531)
Q Consensus 501 ~N~l~g~iP~ 510 (531)
+|.+.|..|.
T Consensus 214 ~N~~~~~~~~ 223 (272)
T 3rfs_A 214 DNPWDCTCPG 223 (272)
T ss_dssp SSCBCCCTTT
T ss_pred CCCccccCcH
Confidence 9999988873
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.11 E-value=2.2e-10 Score=113.66 Aligned_cols=103 Identities=23% Similarity=0.235 Sum_probs=87.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..+..+.++++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..+.++++|+.|+|+
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 37889999999998878889999999999999999997777778899999999999999995555567889999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|+++ .+|..++... ++..+++.
T Consensus 181 ~N~l~-~ip~~~~~~~-~L~~l~L~ 203 (290)
T 1p9a_G 181 ENSLY-TIPKGFFGSH-LLPFAFLH 203 (290)
T ss_dssp SSCCC-CCCTTTTTTC-CCSEEECC
T ss_pred CCcCC-ccChhhcccc-cCCeEEeC
Confidence 99999 8898887654 67777765
No 45
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=1.6e-10 Score=125.38 Aligned_cols=101 Identities=27% Similarity=0.335 Sum_probs=81.5
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCC-cccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~L 499 (531)
.|+.|+|++|.|+ .+|..+++|++|+.|+|++|.|++ +| .++.|++|+.|+|++|+|++.. |..++.+++|+.|+|
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 4778899999888 778888889999999999999886 67 7888899999999999998776 888888999999999
Q ss_pred cCCCCCCCCCh--hhhhhccccceeee
Q 009603 500 NGNTLSGRVPA--ALGGRLLHRASFKY 524 (531)
Q Consensus 500 ~~N~l~g~iP~--~~~~~~~~l~~l~l 524 (531)
++|.|++..|. .+...+.+++.||+
T Consensus 541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 541 QGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99988865543 23344667777764
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=3.1e-11 Score=136.86 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=80.5
Q ss_pred CcccccCCCCCCEEEccCCccCc-----------------cCCcccc--CCCCCCEEecCCCcCCCCCcccccCCCCCCE
Q 009603 436 LPNGISKLRHLQSINLSGNSIRG-----------------AIPSSLG--TIASLEVLDLSYNFFNGSIPESLGQLTALRR 496 (531)
Q Consensus 436 ~p~~l~~L~~L~~L~Ls~N~l~g-----------------~ip~~l~--~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 496 (531)
+|..+++|++|+.|+|++|.|+| .+|..++ +|++|+.|+|++|++.|.+|..++++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999998 4899988 9999999999999999999999999999999
Q ss_pred EeccCCC-CCC-CCChhhhhhc------cccceeeecc
Q 009603 497 LNLNGNT-LSG-RVPAALGGRL------LHRASFKYVW 526 (531)
Q Consensus 497 L~L~~N~-l~g-~iP~~~~~~~------~~l~~l~l~~ 526 (531)
|+|++|+ ++| .+|..++.+. .+++.|++++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 9999998 998 8998887654 4677787764
No 47
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=1e-10 Score=106.00 Aligned_cols=101 Identities=26% Similarity=0.304 Sum_probs=69.9
Q ss_pred EEEEEccCCCCc-ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
++.|+|++|.+. +.+|..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++.+|..+.++++|++|+|+
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 567777777776 66777677777777777777777754 567777777777777777776677666667777777777
Q ss_pred CCCCCCCCC--hhhhhhccccceeeecc
Q 009603 501 GNTLSGRVP--AALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP--~~~~~~~~~l~~l~l~~ 526 (531)
+|.+++ +| ..+. .+.+++.|++++
T Consensus 104 ~N~l~~-~~~~~~l~-~l~~L~~L~l~~ 129 (168)
T 2ell_A 104 GNKLKD-ISTLEPLK-KLECLKSLDLFN 129 (168)
T ss_dssp SSSCCS-SGGGGGGS-SCSCCCEEECCS
T ss_pred CCccCc-chhHHHHh-cCCCCCEEEeeC
Confidence 777773 43 3343 345666776653
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.10 E-value=1e-10 Score=116.49 Aligned_cols=104 Identities=22% Similarity=0.284 Sum_probs=62.0
Q ss_pred EEEEEccCCCCcc-cCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
++.|+|++|.+.+ .+|..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 4556666666655 345556666666666666666665555566666666666666666665444455566666666666
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|++++..|..+..++.+++.|+++
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCCCcccCHHHHHhhhccCCEEEcc
Confidence 6666655555555554455555554
No 49
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=1.6e-10 Score=125.50 Aligned_cols=99 Identities=25% Similarity=0.314 Sum_probs=90.1
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.|++ +|. ++.|++|+.|+|++|.|+ .+|..++.|++|+.|+|++|+|++ +| .++++++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 6789999999997 565 999999999999999999 899999999999999999999996 78 899999999999999
Q ss_pred CCCCCCC-Chhhhhhccccceeeecc
Q 009603 502 NTLSGRV-PAALGGRLLHRASFKYVW 526 (531)
Q Consensus 502 N~l~g~i-P~~~~~~~~~l~~l~l~~ 526 (531)
|+|++.+ |..++. +.+|..|+++.
T Consensus 518 N~l~~~~~p~~l~~-l~~L~~L~L~~ 542 (567)
T 1dce_A 518 NRLQQSAAIQPLVS-CPRLVLLNLQG 542 (567)
T ss_dssp SCCCSSSTTGGGGG-CTTCCEEECTT
T ss_pred CCCCCCCCcHHHhc-CCCCCEEEecC
Confidence 9999776 888866 56789998873
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.09 E-value=1.2e-10 Score=127.25 Aligned_cols=105 Identities=22% Similarity=0.282 Sum_probs=92.6
Q ss_pred EEEEEEccCCCCc-ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
.++.|+|++|.+. +.+|..+..+++|+.|+|++|++++..|..|.+|++|+.|+|++|+|++..|..+.++++|++|+|
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 3678999998754 456778999999999999999999888999999999999999999999888888999999999999
Q ss_pred cCCCCCCCCChhhhhhccccceeeec
Q 009603 500 NGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 500 ~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
++|+|++..|..+..++.+++.|+++
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 99999988888888877788888886
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.09 E-value=1.6e-10 Score=113.39 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=76.9
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+.+..+..+.++++|+.|+|++|.+++..+..+.++++|+.|+|++|++.+..+..++++++|++|+|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence 36677777777776666667777777777777777776666777777777777777777776655567788888888888
Q ss_pred CCCCCC-CCChhhhhhccccceeeecc
Q 009603 501 GNTLSG-RVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g-~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|.+++ .+|..+.. +.+++.|++++
T Consensus 133 ~n~l~~~~l~~~~~~-l~~L~~L~Ls~ 158 (276)
T 2z62_A 133 HNLIQSFKLPEYFSN-LTNLEHLDLSS 158 (276)
T ss_dssp SSCCCCCCCCGGGGG-CTTCCEEECCS
T ss_pred CCccceecCchhhcc-CCCCCEEECCC
Confidence 888875 36776655 45777887764
No 52
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=3e-10 Score=115.34 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=85.9
Q ss_pred EEEccCC-CCcccCcccccCCCCCCEEEccC-CccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 424 GLGLDNQ-GLRGFLPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 424 ~L~L~~n-~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
.++++++ +|++ +|. |..+++|+.|+|++ |.|++..|..|+.|++|+.|+|++|+|++..|..|.+|++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4689998 8885 677 99999999999996 999988888999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+|+ .+|..+...+. |..|+|.
T Consensus 90 N~l~-~~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp SCCS-CCCSTTTCSCC-CCEEECC
T ss_pred Cccc-eeCHHHcccCC-ceEEEee
Confidence 9999 56666555443 7777776
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.07 E-value=2.2e-10 Score=120.44 Aligned_cols=103 Identities=29% Similarity=0.344 Sum_probs=63.1
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..|..++.+++|+.|+|++|++++..|..+.++++|++|+|++
T Consensus 301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC
Confidence 55666666666666666666666666666666666655566666666666666666666655566666666666666666
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+++ .+|......+.+++.|+++
T Consensus 381 N~l~-~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 381 NQLK-SVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp SCCS-CCCTTTTTTCTTCCEEECC
T ss_pred Cccc-cCCHhHhccCCcccEEEcc
Confidence 6666 3444433444555666554
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.06 E-value=5.1e-10 Score=109.62 Aligned_cols=103 Identities=24% Similarity=0.328 Sum_probs=71.6
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.++++|++|+|++
T Consensus 111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 66777777777776666677777777777777777755555567777777777777777765555677777777777777
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+++ .+|......+.++..|++.
T Consensus 191 N~l~-~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 191 NQLK-RVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp SCCS-CCCTTTTTTCTTCCEEECC
T ss_pred CcCC-cCCHHHhccccCCCEEEec
Confidence 7777 4554433445566666665
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.05 E-value=5.3e-10 Score=110.92 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=52.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+++..+..+..+++|+.|+|++|+++...+..+..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|++
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCS
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCC
Confidence 566666666666555555666666666666666666443444566666666666666666 5666666666666666666
Q ss_pred CCCC
Q 009603 502 NTLS 505 (531)
Q Consensus 502 N~l~ 505 (531)
|.+.
T Consensus 205 Np~~ 208 (290)
T 1p9a_G 205 NPWL 208 (290)
T ss_dssp CCBC
T ss_pred CCcc
Confidence 6665
No 56
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.05 E-value=2.9e-10 Score=120.51 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=91.6
Q ss_pred CCCccccccCCCC-----cceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCc
Q 009603 405 PWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 479 (531)
Q Consensus 405 ~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 479 (531)
.|..|.|...... .+..++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|.+|++|+.|+|++|+
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4667888643321 11247788999999988888888889999999999998888888888888888888888888
Q ss_pred CCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 480 l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+++..+..|.++++|++|+|++|.+++..|..+.. +.+|+.|++..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~l~~ 137 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD-LYNLKSLEVGD 137 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEEECC
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccc-cccCCEEECCC
Confidence 88555556788888888888888888666655543 45677777653
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.04 E-value=4.9e-10 Score=110.46 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=69.1
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+.+..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus 131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 56677777777766555667777777777777777755555567777777777777777766677777777777777777
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|.+++ +|......+.+++.|+++
T Consensus 211 n~l~~-~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 211 NNLSA-LPTEALAPLRALQYLRLN 233 (285)
T ss_dssp SCCSC-CCHHHHTTCTTCCEEECC
T ss_pred CcCCc-CCHHHcccCcccCEEecc
Confidence 77774 444333344566666665
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.04 E-value=6e-10 Score=109.30 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=89.5
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC-CCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L 499 (531)
.++.|+|++|.+.+..+..+.++++|+.|+|++|.+.+..+..++.+++|+.|+|++|++++ .+|..+.++++|++|+|
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 48899999999999988899999999999999999998777789999999999999999987 47999999999999999
Q ss_pred cCCCCCCCCChhhhhhccccc----eeeec
Q 009603 500 NGNTLSGRVPAALGGRLLHRA----SFKYV 525 (531)
Q Consensus 500 ~~N~l~g~iP~~~~~~~~~l~----~l~l~ 525 (531)
++|++++..+..+..+ .++. .|+++
T Consensus 157 s~N~l~~~~~~~~~~l-~~L~~l~l~L~ls 185 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVL-HQMPLLNLSLDLS 185 (276)
T ss_dssp CSSCCCEECGGGGHHH-HTCTTCCEEEECC
T ss_pred CCCCCCcCCHHHhhhh-hhccccceeeecC
Confidence 9999996555555543 3444 56655
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.03 E-value=6.1e-10 Score=109.75 Aligned_cols=105 Identities=23% Similarity=0.296 Sum_probs=86.5
Q ss_pred EEEEEEccCCC-CcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQG-LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~-l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
.++.|+|++|. +....+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+.++++|+.|+|
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 47889999997 77666788889999999999999999877888889999999999999998766667888999999999
Q ss_pred cCCCCCCCCChhhhhhccccceeeecc
Q 009603 500 NGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 500 ~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
++|.++ .+|......+.+++.|++++
T Consensus 161 ~~n~l~-~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 161 HGNRIS-SVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CCCccc-ccCHHHhcCccccCEEECCC
Confidence 999998 45554334456788888874
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.03 E-value=2.3e-10 Score=124.90 Aligned_cols=105 Identities=17% Similarity=0.046 Sum_probs=80.3
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..|..+.++++|++|+|++|.+.+..|..|.++++|+.|+|++|++++..|..++++++|++|+|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 47788888888888778888888888888888888887778888888888888888888887777778888888888888
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|.+++..|..+ ..+.+++.|++++
T Consensus 114 ~n~i~~l~~~~~-~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 114 QTGISSIDFIPL-HNQKTLESLYLGS 138 (606)
T ss_dssp TSCCSCGGGSCC-TTCTTCCEEECCS
T ss_pred ccCcccCCcchh-ccCCcccEEECCC
Confidence 887774334444 3345666666664
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.03 E-value=6.2e-10 Score=112.30 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=94.2
Q ss_pred CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (531)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (531)
|.|..+.|+...... ...++.|+|++|.+.+..+..+.++++|+.|+|++|.+++..|..++++++|+.|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 568888886433211 135789999999999888889999999999999999999888999999999999999999
Q ss_pred cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+++ .+|..+. ++|++|+|++|.++ .+|......+.+++.|++++
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCS
T ss_pred cCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCC
Confidence 998 7776654 77888888888887 45554444456677777664
No 62
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.03 E-value=2.3e-10 Score=104.61 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=86.8
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc--cccCCCCCCEEe
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--SLGQLTALRRLN 498 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~ 498 (531)
.++.|+|++|.+++. +.+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 478999999999976 67899999999999999999654455589999999999999996 6776 788999999999
Q ss_pred ccCCCCCCCCChh---hhhhccccceeeeccc
Q 009603 499 LNGNTLSGRVPAA---LGGRLLHRASFKYVWA 527 (531)
Q Consensus 499 L~~N~l~g~iP~~---~~~~~~~l~~l~l~~~ 527 (531)
|++|.++ .+|.. +...+.++..|+++..
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 9999998 77875 3445667888887743
No 63
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=2.3e-10 Score=127.96 Aligned_cols=92 Identities=27% Similarity=0.450 Sum_probs=72.4
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.|+.|+|++|.|+ .+|..|++|++|+.|+|++|.|+ .+|..|+.|++|+.|+|++|.|+ .+|..|++|++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 3667888888887 77777888888888888888888 77878888888888888888876 777778888888888888
Q ss_pred CCCCCCCCChhhhhh
Q 009603 501 GNTLSGRVPAALGGR 515 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~ 515 (531)
+|.|+|.+|..+..+
T Consensus 325 ~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 325 GNPLEKQFLKILTEK 339 (727)
T ss_dssp TSCCCSHHHHHHHHH
T ss_pred CCccCCCChHHHhhc
Confidence 888887777766553
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.03 E-value=5.3e-10 Score=117.48 Aligned_cols=121 Identities=21% Similarity=0.218 Sum_probs=95.1
Q ss_pred CCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCc
Q 009603 405 PWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 479 (531)
Q Consensus 405 ~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 479 (531)
.|..+.|....... ...++.|+|++|++++..+..+.++++|+.|+|++|.+++..+..|.++++|+.|+|++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 35678886433221 1246789999999998888889999999999999999998777889999999999999999
Q ss_pred CCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 480 l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
++...+..+..+++|++|+|++|.++ .+|......+.+++.|++..
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCC
T ss_pred CCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCC
Confidence 99666667889999999999999988 55554445556677777764
No 65
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=3.9e-10 Score=103.06 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=80.4
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|++|+|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 37899999999998777778999999999999999997777778999999999999999996655567889999999999
Q ss_pred CCCCCCCCC
Q 009603 501 GNTLSGRVP 509 (531)
Q Consensus 501 ~N~l~g~iP 509 (531)
+|.+.+..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 999998776
No 66
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.02 E-value=6.3e-10 Score=121.49 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=62.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC-CCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L~ 500 (531)
++.|+|++|.+++..|..+++|++|++|+|++|.+.+..|..++++++|+.|+|++|++.+ .+|..++++++|++|+|+
T Consensus 82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred cCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 5667777777766666667777777777777777765555666677777777777777664 556667777777777777
Q ss_pred CCCCCCCCChhhhhh
Q 009603 501 GNTLSGRVPAALGGR 515 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~ 515 (531)
+|++++..|..++.+
T Consensus 162 ~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 162 YNYIQTITVNDLQFL 176 (606)
T ss_dssp SSCCCEECTTTTHHH
T ss_pred CCcceecChhhhhhh
Confidence 777765555555443
No 67
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.02 E-value=4.7e-10 Score=104.46 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=78.0
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..+..+..|++|+.|+|++|.+++..|..++.+++|+.|+|++|++.+.+| .+..+++|+.|+|+
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 36788888888887777788888888888888888887778888888888888888887444666 57888888888888
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|.+++ +| .+.. +.+++.|++.
T Consensus 168 ~n~i~~-~~-~l~~-l~~L~~L~l~ 189 (197)
T 4ezg_A 168 FDGVHD-YR-GIED-FPKLNQLYAF 189 (197)
T ss_dssp TBCCCC-CT-TGGG-CSSCCEEEEC
T ss_pred CCCCcC-hH-Hhcc-CCCCCEEEee
Confidence 888874 55 4433 4567777765
No 68
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=6.4e-11 Score=132.45 Aligned_cols=101 Identities=27% Similarity=0.396 Sum_probs=88.8
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.|+.|+|++|.+. .+|..+.+|++|+.|+|++|.|+ .+|..|+.|++|+.|+|++|+|+ .+|..|++|++|++|+|+
T Consensus 225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 3778999999988 77888889999999999999999 88999999999999999999999 889999999999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|.|+ .||..++. +.+|..|+|+.
T Consensus 302 ~N~l~-~lp~~~~~-l~~L~~L~L~~ 325 (727)
T 4b8c_D 302 DNMVT-TLPWEFGN-LCNLQFLGVEG 325 (727)
T ss_dssp SSCCC-CCCSSTTS-CTTCCCEECTT
T ss_pred CCCCC-ccChhhhc-CCCccEEeCCC
Confidence 99997 88988655 56788888864
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.01 E-value=4.9e-10 Score=111.54 Aligned_cols=104 Identities=20% Similarity=0.259 Sum_probs=93.5
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCc-cCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
++.|+|++|.+.+..+..+.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 7899999999999999999999999999999999997 688899999999999999999998889999999999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|.+++..+..+ ..+.+++.|++++
T Consensus 208 ~N~l~~~~~~~~-~~l~~L~~L~L~~ 232 (306)
T 2z66_A 208 HNNFFSLDTFPY-KCLNSLQVLDYSL 232 (306)
T ss_dssp TSCCSBCCSGGG-TTCTTCCEEECTT
T ss_pred CCccCccChhhc-cCcccCCEeECCC
Confidence 999995444455 4467889999874
No 70
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.01 E-value=8.4e-10 Score=120.49 Aligned_cols=104 Identities=24% Similarity=0.340 Sum_probs=61.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+++..|..|.++++|+.|+|++|.+++..|..|++|++|++|+|++|++++..|..++++++|++|+|++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence 45555665555555555556666666666666666655555566666666666666666554445566666666666666
Q ss_pred CCCCC-CCChhhhhhccccceeeecc
Q 009603 502 NTLSG-RVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 502 N~l~g-~iP~~~~~~~~~l~~l~l~~ 526 (531)
|.+++ .+|..+++ +.+++.|++++
T Consensus 138 n~l~~~~lp~~~~~-l~~L~~L~Ls~ 162 (606)
T 3vq2_A 138 NFIHSCKLPAYFSN-LTNLVHVDLSY 162 (606)
T ss_dssp SCCCCCCCCGGGGT-CTTCCEEECCS
T ss_pred CcccceechHhHhh-cCCCCEEEccC
Confidence 66654 45665544 34566666653
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.00 E-value=1.2e-10 Score=116.65 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=87.5
Q ss_pred EEEEEEccCCCCcccCcccccCC-----CCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCC--Ccccc--cCC
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IPESL--GQL 491 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~--iP~~l--~~l 491 (531)
.++.|+|++|.+++. |..+..+ ++|+.|+|++|.+.+..|..++.+++|+.|+|++|++.|. +|..+ .++
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 478999999999988 7777777 8999999999999988888999999999999999998876 34455 889
Q ss_pred CCCCEEeccCCCCCC--CCChhhhhhccccceeeecc
Q 009603 492 TALRRLNLNGNTLSG--RVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 492 ~~L~~L~L~~N~l~g--~iP~~~~~~~~~l~~l~l~~ 526 (531)
++|++|+|++|++++ .+|..+...+.+++.|++++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 999999999999983 34445555567889998874
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.00 E-value=1.1e-09 Score=110.18 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=86.8
Q ss_pred CCCCccccccCCCC-----cceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC
Q 009603 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (531)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (531)
|.|..+.|+..... ....++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..++.+++|+.|+|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 56888888643221 1234788999999999888888999999999999999999888999999999999999999
Q ss_pred cCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+++ .+|..+. ++|++|+|++|.+++ +|......+.+++.|+++
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECC
T ss_pred cCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECC
Confidence 988 6665543 566667776666663 333322334455555554
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.00 E-value=3.8e-10 Score=108.32 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=76.7
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCc-cCccCCccccCCCCCCEEecCC-CcCCCCCcccccCCCCCCEEe
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTIASLEVLDLSY-NFFNGSIPESLGQLTALRRLN 498 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~ 498 (531)
.++.|+|++|++++..+..+.++++|+.|+|++|. ++...+..|..+++|+.|+|++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 47788888888887777788888888888888886 7755556788888888888887 888866666778888888888
Q ss_pred ccCCCCCCCCChhhhhhccccc---eeeec
Q 009603 499 LNGNTLSGRVPAALGGRLLHRA---SFKYV 525 (531)
Q Consensus 499 L~~N~l~g~iP~~~~~~~~~l~---~l~l~ 525 (531)
|++|.+++ +|. +.. +.++. .|+++
T Consensus 112 l~~n~l~~-lp~-~~~-l~~L~~L~~L~l~ 138 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTK-VYSTDIFFILEIT 138 (239)
T ss_dssp EEEECCCS-CCC-CTT-CCBCCSEEEEEEE
T ss_pred CCCCCCcc-ccc-ccc-ccccccccEEECC
Confidence 88888874 765 332 33444 55554
No 74
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=7.3e-10 Score=103.08 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=80.1
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.|+.|+|++|.|++..+..|.+|++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..+..+..+++|+.|+|+
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 37899999999999888899999999999999999998888899999999999999999996666679999999999999
Q ss_pred CCCCCCC
Q 009603 501 GNTLSGR 507 (531)
Q Consensus 501 ~N~l~g~ 507 (531)
+|.+...
T Consensus 135 ~N~~~C~ 141 (193)
T 2wfh_A 135 ANPLYCD 141 (193)
T ss_dssp SSCEECS
T ss_pred CCCeecC
Confidence 9999754
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.98 E-value=6.6e-10 Score=119.03 Aligned_cols=100 Identities=21% Similarity=0.189 Sum_probs=68.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..|..|+++++|++|+|++|+++ .+|.. .+++|++|+|++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence 566777777777666667777777777777777777666777777777777777777777 56655 667777777777
Q ss_pred CCCCC-CCChhhhhhccccceeeec
Q 009603 502 NTLSG-RVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g-~iP~~~~~~~~~l~~l~l~ 525 (531)
|.+++ .+|..++. +.+++.|+++
T Consensus 100 N~l~~~~~p~~~~~-l~~L~~L~L~ 123 (520)
T 2z7x_B 100 NAFDALPICKEFGN-MSQLKFLGLS 123 (520)
T ss_dssp SCCSSCCCCGGGGG-CTTCCEEEEE
T ss_pred Cccccccchhhhcc-CCcceEEEec
Confidence 77765 45666654 3456666665
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.97 E-value=7.9e-10 Score=122.49 Aligned_cols=84 Identities=24% Similarity=0.313 Sum_probs=41.4
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..+++|++|++|+|++|++++..+..|+++++|++|+|++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 44555555555554444455555555555555555544444444455555555555554422222344444444444444
Q ss_pred CCCC
Q 009603 502 NTLS 505 (531)
Q Consensus 502 N~l~ 505 (531)
|.++
T Consensus 107 n~l~ 110 (680)
T 1ziw_A 107 NSIQ 110 (680)
T ss_dssp SCCC
T ss_pred CccC
Confidence 4444
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.97 E-value=6.2e-10 Score=121.68 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=86.5
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.|+.|+|++|.+.+..+..+..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.|++..+..|+++++|++|+|+
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 46788999999988888888999999999999999998878788899999999999999985544556889999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|.+++..|..++. +.++..|+++.
T Consensus 156 ~N~l~~~~~~~~~~-l~~L~~L~L~~ 180 (597)
T 3oja_B 156 NNNLERIEDDTFQA-TTSLQNLQLSS 180 (597)
T ss_dssp SSCCCBCCTTTTTT-CTTCCEEECTT
T ss_pred CCcCCCCChhhhhc-CCcCcEEECcC
Confidence 99998766666654 56788888764
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.96 E-value=6.7e-10 Score=126.44 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=68.2
Q ss_pred EEEEEccCCCCcccC-cccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCccc--ccCCCCCCEEe
Q 009603 422 IDGLGLDNQGLRGFL-PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES--LGQLTALRRLN 498 (531)
Q Consensus 422 l~~L~L~~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~ 498 (531)
|+.|+|++|.+.+.+ |..+.+|++|+.|+|++|.+.+..|..|++|++|+.|+|++|++++.+|.. ++++++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 555666666554444 455667777777777777777666777777777777777777777666554 66777777777
Q ss_pred ccCCCCCCCCChhhhhhccccceeeecc
Q 009603 499 LNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 499 L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|++|.+++..|......+.+|+.|+++.
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred CCCCcccccccchhHhhCCCCCEEECCC
Confidence 7777776554433334455667776653
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.96 E-value=9.9e-10 Score=102.27 Aligned_cols=103 Identities=22% Similarity=0.278 Sum_probs=89.0
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+. .++.+..+++|+.|+|++|.+++..|..++.|++|+.|+|++|++++..|..++++++|++|+|+
T Consensus 67 ~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 67 NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 3789999999665 34579999999999999999999889999999999999999999998889999999999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeeccc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVWA 527 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~~ 527 (531)
+|.+.+.+| .+.. +.+++.|++++.
T Consensus 145 ~n~~i~~~~-~l~~-l~~L~~L~l~~n 169 (197)
T 4ezg_A 145 YNGAITDIM-PLKT-LPELKSLNIQFD 169 (197)
T ss_dssp SCTBCCCCG-GGGG-CSSCCEEECTTB
T ss_pred CCCCccccH-hhcC-CCCCCEEECCCC
Confidence 998444787 4544 567899988753
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.94 E-value=1.6e-09 Score=117.41 Aligned_cols=102 Identities=25% Similarity=0.234 Sum_probs=85.4
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+.+..+..+.++++|+.|+|++|.+++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+|+
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 4788999999999888888999999999999999999888888999999999999999988 67776 78899999999
Q ss_pred CCCCCC-CCChhhhhhccccceeeecc
Q 009603 501 GNTLSG-RVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g-~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|++++ .+|..+++ +.+++.|+++.
T Consensus 130 ~N~l~~l~~p~~~~~-l~~L~~L~L~~ 155 (562)
T 3a79_B 130 FNDFDVLPVCKEFGN-LTKLTFLGLSA 155 (562)
T ss_dssp SSCCSBCCCCGGGGG-CTTCCEEEEEC
T ss_pred CCCccccCchHhhcc-cCcccEEecCC
Confidence 999885 44566655 45778887764
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.93 E-value=3.2e-10 Score=113.58 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=89.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCcc--CCccc--cCCCCCCEEecCCCcCCC--CCc-ccccCCCC
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA--IPSSL--GTIASLEVLDLSYNFFNG--SIP-ESLGQLTA 493 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~--ip~~l--~~l~~L~~L~Ls~N~l~g--~iP-~~l~~l~~ 493 (531)
.++.|+|++|.+.+..+..+.++++|+.|+|++|.+.|. +|..+ +.+++|+.|+|++|++++ .++ ..+.++++
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence 488999999999999889999999999999999999876 34455 899999999999999993 333 34468899
Q ss_pred CCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 494 LRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 494 L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|+.|+|++|++++.+|......+.+++.|++++
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence 999999999999888655555567889999875
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.93 E-value=8.9e-10 Score=118.74 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=44.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC-CCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L~ 500 (531)
++.|+|++|.+++..|..+.++++|+.|+|++|.+++..|..++++++|+.|+|++|++++ .+|..++++++|++|+|+
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 4455555555555544555555555555555555554444445555555555555555554 234445555555555555
Q ss_pred CCCCCCCCC
Q 009603 501 GNTLSGRVP 509 (531)
Q Consensus 501 ~N~l~g~iP 509 (531)
+|.+.+.+|
T Consensus 132 ~n~~~~~~~ 140 (549)
T 2z81_A 132 NVETFSEIR 140 (549)
T ss_dssp ESSSCCEEC
T ss_pred CCccccccC
Confidence 554333444
No 83
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=2.1e-09 Score=98.10 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=82.6
Q ss_pred EEEEEccCCCCcccCcccccCCC-CCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLR-HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
++.|+|++|+++. ++. +..+. +|+.|+|++|.+++. ..+..+++|+.|+|++|++++..|..+..+++|++|+|+
T Consensus 21 L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 21 DRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred ceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 7899999999995 444 55555 999999999999975 689999999999999999996544555899999999999
Q ss_pred CCCCCCCCCh--hhhhhccccceeeecc
Q 009603 501 GNTLSGRVPA--ALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~--~~~~~~~~l~~l~l~~ 526 (531)
+|+++ .+|. .+. .+.++..|++..
T Consensus 97 ~N~i~-~~~~~~~l~-~l~~L~~L~l~~ 122 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLA-SLKSLTYLCILR 122 (176)
T ss_dssp SCCCC-CGGGGGGGG-GCTTCCEEECCS
T ss_pred CCcCC-cchhhHhhh-cCCCCCEEEecC
Confidence 99996 7886 554 456788888874
No 84
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.91 E-value=1.1e-09 Score=113.00 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=77.0
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~L 499 (531)
.++.|+|++|.+.+..+..+..+++|+.|+|++|.+++..|..++.+++|+.|+|++|+++ .+|. .+.++++|++|+|
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence 3667888888887777777888888888888888888777777788888888888888888 4454 3577888888888
Q ss_pred cCCCCCCCCChhhhhhccccceeeecc
Q 009603 500 NGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 500 ~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
++|.+++..|..+. .+.+++.|+++.
T Consensus 149 ~~n~l~~~~~~~~~-~l~~L~~L~l~~ 174 (390)
T 3o6n_A 149 SNNNLERIEDDTFQ-ATTSLQNLQLSS 174 (390)
T ss_dssp CSSCCCBCCTTTTS-SCTTCCEEECCS
T ss_pred CCCccCccChhhcc-CCCCCCEEECCC
Confidence 88888754454453 345677777764
No 85
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.91 E-value=2.8e-09 Score=109.95 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=85.4
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+.+..|..+.++++|+.|+|++|.++...+..+.++++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 48899999999999888889999999999999999994433446899999999999999998888889999999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|.+++ ++. ..+.++..|+++
T Consensus 174 ~n~l~~-~~~---~~l~~L~~L~l~ 194 (390)
T 3o6n_A 174 SNRLTH-VDL---SLIPSLFHANVS 194 (390)
T ss_dssp SSCCSB-CCG---GGCTTCSEEECC
T ss_pred CCcCCc-ccc---ccccccceeecc
Confidence 999994 442 223455666655
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.91 E-value=2.5e-09 Score=116.87 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=86.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.|+.|+|++|.+++..|..+++|++|+.|+|++|.+++..+..|+.+++|+.|+|++|.+++..|..++++++|+.|+|+
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 48899999999999888889999999999999999996555567999999999999999999888899999999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|.+++ +|. ..+.++..|+++
T Consensus 180 ~N~l~~-~~~---~~l~~L~~L~l~ 200 (597)
T 3oja_B 180 SNRLTH-VDL---SLIPSLFHANVS 200 (597)
T ss_dssp TSCCSB-CCG---GGCTTCSEEECC
T ss_pred CCCCCC-cCh---hhhhhhhhhhcc
Confidence 999995 442 223455666655
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.90 E-value=1.3e-09 Score=116.72 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=72.0
Q ss_pred EEEEEEccCCCCcc--cCcccccCCCCCCEEEccCCccCccCCcc-ccCCCCCCEEecCCCcCCCCCcccccCCCCCCEE
Q 009603 421 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497 (531)
Q Consensus 421 ~l~~L~L~~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 497 (531)
.++.|+|++|.+.+ .+|..+.++++|+.|+|++|.+++.+|.. +..+++|+.|+|++|++++.+|..+. ++|+.|
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L 426 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVL 426 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEE
T ss_pred CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEE
Confidence 36677777777775 45566777777777777777777656653 66677777777777777776666553 678888
Q ss_pred eccCCCCCCCCChhhhhhccccceeeecc
Q 009603 498 NLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 498 ~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|++|+++ .+|..++ .+.+++.|++++
T Consensus 427 ~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~ 453 (520)
T 2z7x_B 427 DLHSNKIK-SIPKQVV-KLEALQELNVAS 453 (520)
T ss_dssp ECCSSCCC-CCCGGGG-GCTTCCEEECCS
T ss_pred ECCCCccc-ccchhhh-cCCCCCEEECCC
Confidence 88888887 7887776 456777777764
No 88
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.90 E-value=2.5e-09 Score=112.75 Aligned_cols=101 Identities=23% Similarity=0.225 Sum_probs=52.2
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~L~ 500 (531)
|+.|+|++|.+++..+..+..+++|+.|+|++|.+....+..+.++++|+.|+|++|+..+.+|. .+.++++|+.|+|+
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 45555555555544444455555555555555555544344455555555555555333333332 45556666666666
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|+++ .+|. + ..+.+++.|+++
T Consensus 205 ~n~l~-~~~~-~-~~l~~L~~L~Ls 226 (452)
T 3zyi_A 205 MCNIK-DMPN-L-TPLVGLEELEMS 226 (452)
T ss_dssp TSCCS-SCCC-C-TTCTTCCEEECT
T ss_pred CCccc-cccc-c-cccccccEEECc
Confidence 66666 3443 2 223455666655
No 89
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.89 E-value=2.2e-09 Score=122.20 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=93.0
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCcc--ccCCCCCCEEecCCCcCCCCCc-ccccCCCCCCEE
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSS--LGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRL 497 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~--l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L 497 (531)
.|+.|+|++|.+.+..|..+.+|++|+.|+|++|.+++.+|.. +++|++|+.|+|++|.+.+..| ..++++++|++|
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 4889999999999999999999999999999999999877765 8999999999999999997655 578999999999
Q ss_pred eccCCCCCCCCChhhhhhc-cccceeeecc
Q 009603 498 NLNGNTLSGRVPAALGGRL-LHRASFKYVW 526 (531)
Q Consensus 498 ~L~~N~l~g~iP~~~~~~~-~~l~~l~l~~ 526 (531)
+|++|.+++..|..+..+. .++..|+++.
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 9999999988888887652 5677777764
No 90
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.89 E-value=2.3e-09 Score=117.07 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=54.3
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..|..++++++|+.|+|++|++++..+..+..+++|++|+|++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 55666666666666666666666666666666666654455566666666666666666652222233366666666666
Q ss_pred CCCCCCCChhhhh
Q 009603 502 NTLSGRVPAALGG 514 (531)
Q Consensus 502 N~l~g~iP~~~~~ 514 (531)
|.+++..|..++.
T Consensus 163 n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 163 NAIHYLSKEDMSS 175 (606)
T ss_dssp SCCCEECHHHHHT
T ss_pred CcccccChhhhhh
Confidence 6666444444433
No 91
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.89 E-value=3.2e-09 Score=112.43 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=73.2
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
|+.|+|++|.+.+..+..+.++++|+.|+|++|.+.+..|..|..+++|+.|+|++|++++..+..+.++++|+.|+|++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 66777777777777777777777777777777777776677777777777777777777765555677777777777777
Q ss_pred CCCCCCCChhhhhhccccceeeecc
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|.+.+..+..+ ..+.+++.|+++.
T Consensus 186 n~i~~~~~~~~-~~l~~L~~L~l~~ 209 (477)
T 2id5_A 186 LNINAIRDYSF-KRLYRLKVLEISH 209 (477)
T ss_dssp CCCCEECTTCS-CSCTTCCEEEEEC
T ss_pred CcCcEeChhhc-ccCcccceeeCCC
Confidence 77775433333 3345677777664
No 92
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.88 E-value=3.1e-09 Score=111.62 Aligned_cols=101 Identities=26% Similarity=0.283 Sum_probs=51.7
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~L~ 500 (531)
|+.|+|++|.+++..+..+..+++|+.|+|++|.+....+..|.++++|+.|+|++|+..+.+|. .|.++++|+.|+|+
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 44555555555544444455555555555555555544444455555555555555333323332 45556666666666
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|+++ .+|. + ..+.+++.|+++
T Consensus 194 ~n~l~-~~~~-~-~~l~~L~~L~Ls 215 (440)
T 3zyj_A 194 MCNLR-EIPN-L-TPLIKLDELDLS 215 (440)
T ss_dssp TSCCS-SCCC-C-TTCSSCCEEECT
T ss_pred CCcCc-cccc-c-CCCcccCEEECC
Confidence 66665 4553 2 223455566555
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=108.95 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=86.6
Q ss_pred EEEEEEccCCCCcccCc----ccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCC--Cc--ccccCCC
Q 009603 421 VIDGLGLDNQGLRGFLP----NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IP--ESLGQLT 492 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p----~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~--iP--~~l~~l~ 492 (531)
.++.|+|++|.+.+..+ ..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|++.+. ++ ..++.++
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence 47889999999998665 3456899999999999999988889999999999999999998763 33 3347899
Q ss_pred CCCEEeccCCCCCCCCChh---hhhhccccceeeecc
Q 009603 493 ALRRLNLNGNTLSGRVPAA---LGGRLLHRASFKYVW 526 (531)
Q Consensus 493 ~L~~L~L~~N~l~g~iP~~---~~~~~~~l~~l~l~~ 526 (531)
+|++|+|++|+++ .+|.. +...+.+++.|++++
T Consensus 198 ~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 198 AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTT
T ss_pred CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCC
Confidence 9999999999997 45543 445567899999885
No 94
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.87 E-value=2.6e-09 Score=115.41 Aligned_cols=103 Identities=21% Similarity=0.288 Sum_probs=69.7
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccC-ccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
++.|+|++|.+.+..|..+.++++|+.|+|++|.+. +.+|..+..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 566777777777766666777777777777777776 5667677777777777777777776667677777777777777
Q ss_pred CCCCCCCCChhhhhhccccceeeec
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
+|++++..|..+. .+.+++.|+++
T Consensus 503 ~n~l~~~~~~~~~-~l~~L~~L~l~ 526 (570)
T 2z63_A 503 SNQLKSVPDGIFD-RLTSLQKIWLH 526 (570)
T ss_dssp SSCCSCCCTTTTT-TCTTCCEEECC
T ss_pred CCcCCCCCHHHhh-cccCCcEEEec
Confidence 7777754444343 34456666665
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.87 E-value=3e-09 Score=114.92 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=85.1
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..|+.+++|+.|+|++|++++..+..++++++|++|+|+
T Consensus 53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 132 (570)
T 2z63_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (570)
T ss_dssp SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence 47788888888887777778888888888888888887777788888888888888888885555568888999999999
Q ss_pred CCCCCC-CCChhhhhhccccceeeecc
Q 009603 501 GNTLSG-RVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g-~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|.+++ .+|..+++ +.+++.|++++
T Consensus 133 ~n~l~~~~lp~~~~~-l~~L~~L~l~~ 158 (570)
T 2z63_A 133 HNLIQSFKLPEYFSN-LTNLEHLDLSS 158 (570)
T ss_dssp SSCCCCCCCCGGGGG-CTTCCEEECTT
T ss_pred CCccceecChhhhcc-cCCCCEEeCcC
Confidence 998886 57887765 46788888874
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.87 E-value=1.8e-09 Score=115.07 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=77.2
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc----------------cccCCCCCCEEecCCCcCCCCC
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS----------------SLGTIASLEVLDLSYNFFNGSI 484 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~----------------~l~~l~~L~~L~Ls~N~l~g~i 484 (531)
.|+.|+|++|.+++.+| +..+++|+.|+|++|.+++..+. ....+++|+.|+|++|.+++..
T Consensus 59 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~ 136 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR 136 (487)
T ss_dssp TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGG
T ss_pred CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCC
Confidence 37889999999987665 78888888888887777643211 0123566777888888888777
Q ss_pred cccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 485 P~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|..++.+++|+.|+|++|.+++.+|..+...+.++..|++++
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 778888888888888888888877777776666777777764
No 97
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.86 E-value=4.5e-09 Score=105.80 Aligned_cols=84 Identities=25% Similarity=0.319 Sum_probs=67.8
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|+|++
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC
Confidence 667888888888777777888888888888888888777777788888888888888887 7777788888888888888
Q ss_pred CCCCC
Q 009603 502 NTLSG 506 (531)
Q Consensus 502 N~l~g 506 (531)
|++++
T Consensus 273 N~i~~ 277 (330)
T 1xku_A 273 NNISA 277 (330)
T ss_dssp SCCCC
T ss_pred CcCCc
Confidence 88874
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.85 E-value=7.7e-10 Score=110.58 Aligned_cols=101 Identities=22% Similarity=0.196 Sum_probs=79.5
Q ss_pred EEEEEEccCCCCccc--Cc--ccccCCCCCCEEEccCCccCccCCc----cccCCCCCCEEecCCCcCCCCCcccccCC-
Q 009603 421 VIDGLGLDNQGLRGF--LP--NGISKLRHLQSINLSGNSIRGAIPS----SLGTIASLEVLDLSYNFFNGSIPESLGQL- 491 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~--~p--~~l~~L~~L~~L~Ls~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l- 491 (531)
.++.|+|++|.+.+. ++ ..+..+++|+.|+|++|.++ .++. .++.+++|+.|+|++|++++.+|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 378899999988753 22 23467888999999999987 3333 25778999999999999998888877776
Q ss_pred --CCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 492 --TALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 492 --~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
++|++|+|++|+++ .+|..+. .+++.|++++
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~ 281 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSS 281 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCC
Confidence 69999999999999 8888764 5788888874
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.85 E-value=2.4e-09 Score=116.05 Aligned_cols=104 Identities=23% Similarity=0.252 Sum_probs=88.7
Q ss_pred eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCc--cCCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCE
Q 009603 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRR 496 (531)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~ 496 (531)
..++.|+|++|.+++.+|..+.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++.+|. .+..+++|+.
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 357899999999999889999999999999999999996 4456789999999999999999986776 4788999999
Q ss_pred EeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 497 LNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 497 L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|+|++|++++.+|..+. .+++.|++++
T Consensus 433 L~l~~n~l~~~~~~~l~---~~L~~L~L~~ 459 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP---PKVKVLDLHN 459 (562)
T ss_dssp EECCSSCCCGGGGSSCC---TTCSEEECCS
T ss_pred EECCCCCCCcchhhhhc---CcCCEEECCC
Confidence 99999999988877653 5678888774
No 100
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.85 E-value=4.1e-09 Score=116.72 Aligned_cols=106 Identities=20% Similarity=0.159 Sum_probs=89.8
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..|+++++|+.|+|++|.+++..|..++++++|++|+|+
T Consensus 74 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence 37889999999987666679999999999999999987777889999999999999999998888889999999999999
Q ss_pred CCCCCCCCChhhhh-hccccceeeecc
Q 009603 501 GNTLSGRVPAALGG-RLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~-~~~~l~~l~l~~ 526 (531)
+|.+++..|..+.. ...+++.|++++
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred CCcccccCHHHhhccccccccEEECCC
Confidence 99999766665543 235788888874
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.84 E-value=4.5e-09 Score=111.98 Aligned_cols=101 Identities=20% Similarity=0.126 Sum_probs=75.7
Q ss_pred EEEEEEccCCCCcccCccccc-CCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
.++.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. | .+..+++|+.|+|++|.|++. |..+..+++|+.|+|
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISL 221 (487)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEEC
T ss_pred CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEe
Confidence 478888888888887777775 688888888888888865 2 334588888888888888864 444788888888888
Q ss_pred cCCCCCCCCChhhhhhccccceeeecc
Q 009603 500 NGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 500 ~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
++|.++ .+|..+.. +.++..|++..
T Consensus 222 s~N~l~-~lp~~l~~-l~~L~~L~l~~ 246 (487)
T 3oja_A 222 RNNKLV-LIEKALRF-SQNLEHFDLRG 246 (487)
T ss_dssp TTSCCC-EECTTCCC-CTTCCEEECTT
T ss_pred cCCcCc-ccchhhcc-CCCCCEEEcCC
Confidence 888888 47776543 45677777763
No 102
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.84 E-value=2.6e-09 Score=107.65 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=41.4
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccC------CCCCC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ------LTALR 495 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~------l~~L~ 495 (531)
++.|+|++|.+++..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..+..+.. ..+|+
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 444555555555544445555555555555555555 45555555555555555555555333333332 23445
Q ss_pred EEeccCCCCC
Q 009603 496 RLNLNGNTLS 505 (531)
Q Consensus 496 ~L~L~~N~l~ 505 (531)
.|+|++|.+.
T Consensus 298 ~L~l~~N~~~ 307 (332)
T 2ft3_A 298 GISLFNNPVP 307 (332)
T ss_dssp EEECCSSSSC
T ss_pred ceEeecCccc
Confidence 5555555544
No 103
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.83 E-value=2.9e-09 Score=102.11 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=76.5
Q ss_pred EEEEEccC-CCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCC---EEecCCC-cCCCCCcccccCCCCCC-
Q 009603 422 IDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE---VLDLSYN-FFNGSIPESLGQLTALR- 495 (531)
Q Consensus 422 l~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~---~L~Ls~N-~l~g~iP~~l~~l~~L~- 495 (531)
++.|+|++ |.+++..+..+.++++|+.|+|++|.+++ +|. +..+++|+ .|+|++| ++++..+..+.++++|+
T Consensus 82 L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence 67788887 88877666777888888888888888875 665 77777777 8888888 77755556678888888
Q ss_pred EEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 496 RLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 496 ~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
.|+|++|.++ .+|...+.. .+++.|++..
T Consensus 160 ~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 160 TLKLYNNGFT-SVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEECCSCCCC-EECTTTTTT-CEEEEEECTT
T ss_pred EEEcCCCCCc-ccCHhhcCC-CCCCEEEcCC
Confidence 8888888888 777765555 5677777664
No 104
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.82 E-value=4.2e-09 Score=107.08 Aligned_cols=102 Identities=19% Similarity=0.280 Sum_probs=57.2
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc--cccCCCCCCEEecCCCc-CCCCCcccccCCCCCCEEe
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNF-FNGSIPESLGQLTALRRLN 498 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l~~L~~L~ 498 (531)
++.|+|++|.+++..+..+.++++|+.|+|++|.++ .+|. .+..+++|+.|+|++|+ +.+..|..+.++++|+.|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 556666666665444444566666666666666665 3333 45566666666666653 4433445566666666666
Q ss_pred ccCCCCCCCCChhhhhhccccceeeec
Q 009603 499 LNGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 499 L~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|++|.+++..|..+.. +.+++.|+++
T Consensus 181 l~~n~l~~~~~~~l~~-l~~L~~L~l~ 206 (353)
T 2z80_A 181 IDASDLQSYEPKSLKS-IQNVSHLILH 206 (353)
T ss_dssp EEETTCCEECTTTTTT-CSEEEEEEEE
T ss_pred CCCCCcCccCHHHHhc-cccCCeecCC
Confidence 6666666555555543 3345555554
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.81 E-value=3e-09 Score=115.27 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=42.8
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.|+ .+| ..+++|+.|+|++|.|++ +|. +.. +|+.|+|++|+|++ +|. .+++|+.|+|++
T Consensus 82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADN 149 (571)
T ss_dssp CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence 344444444444 233 234455555555555553 444 333 55555555555554 444 345566666666
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|.|++ +|. .+.++..|+++
T Consensus 150 N~l~~-lp~----~l~~L~~L~Ls 168 (571)
T 3cvr_A 150 NQLTM-LPE----LPTSLEVLSVR 168 (571)
T ss_dssp SCCSC-CCC----CCTTCCEEECC
T ss_pred CccCc-CCC----cCCCcCEEECC
Confidence 66553 554 23445555554
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.77 E-value=2.8e-09 Score=106.94 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=76.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc----------------cccCCCCCCEEecCCCcCCCCC
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS----------------SLGTIASLEVLDLSYNFFNGSI 484 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~----------------~l~~l~~L~~L~Ls~N~l~g~i 484 (531)
.++.|+|++|.+++..+ +..+++|+.|+|++|.+++..+. ....+++|+.|+|++|++++..
T Consensus 59 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR 136 (317)
T ss_dssp TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGG
T ss_pred cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCcc
Confidence 37899999999987665 88999999999999988743210 0123456777777777777666
Q ss_pred cccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeecc
Q 009603 485 PESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 485 P~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|..++.+++|++|+|++|.+++..|..+...+.+++.|++++
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 667777888888888888888666666665566777777764
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.73 E-value=7.2e-09 Score=105.45 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=91.9
Q ss_pred CCCCccccccCCCCc-----ceEEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc-cccCCCCCCE-EecC
Q 009603 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEV-LDLS 476 (531)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~-L~Ls 476 (531)
|.|..|.|+..+... +..++.|+|++|+|+...+..|.+|++|+.|+|++|.+.+.+|. .|.+|++|+. +.++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 578889997543221 13478999999999976667899999999999999999877774 5788888775 6677
Q ss_pred CCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeee
Q 009603 477 YNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKY 524 (531)
Q Consensus 477 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l 524 (531)
.|+++...|..|..+++|++|++++|++.+ +|+........+..|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEE
T ss_pred CCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhh
Confidence 899997778889999999999999999984 44433222333444544
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.72 E-value=3e-08 Score=98.18 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=38.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+++. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 44455555555442 2344555555555555555532 344555555555555555553322 45555555555555
Q ss_pred CCCC
Q 009603 502 NTLS 505 (531)
Q Consensus 502 N~l~ 505 (531)
|.++
T Consensus 188 N~i~ 191 (291)
T 1h6t_A 188 NHIS 191 (291)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 5555
No 109
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.71 E-value=1.7e-08 Score=101.12 Aligned_cols=101 Identities=20% Similarity=0.139 Sum_probs=85.3
Q ss_pred EEEEEEccCCCCcccCccccc-CCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
.++.|+|++|.+.+..+..+. .+++|+.|+|++|.+++. | ....+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (317)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEEC
Confidence 589999999999988777764 799999999999999955 3 34469999999999999995 5556899999999999
Q ss_pred cCCCCCCCCChhhhhhccccceeeecc
Q 009603 500 NGNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 500 ~~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
++|+++ .+|..+.. +.+++.|+++.
T Consensus 222 ~~N~l~-~l~~~~~~-l~~L~~L~l~~ 246 (317)
T 3o53_A 222 RNNKLV-LIEKALRF-SQNLEHFDLRG 246 (317)
T ss_dssp TTSCCC-EECTTCCC-CTTCCEEECTT
T ss_pred cCCccc-chhhHhhc-CCCCCEEEccC
Confidence 999999 68887644 56788888874
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.68 E-value=4.9e-08 Score=96.63 Aligned_cols=97 Identities=26% Similarity=0.314 Sum_probs=65.9
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++. +.+..+++|+.|+|++|.+++. +.+..+++|+.|+|++|++++. ..+..+++|+.|+|+
T Consensus 91 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 91 NLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 164 (291)
T ss_dssp TCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence 366777777777652 3377777777777777777743 3567777777777777777753 457777888888888
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|++++. +. + ..+.+++.|++++
T Consensus 165 ~N~l~~~-~~-l-~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 165 DNQISDI-VP-L-AGLTKLQNLYLSK 187 (291)
T ss_dssp SSCCCCC-GG-G-TTCTTCCEEECCS
T ss_pred CCccccc-hh-h-cCCCccCEEECCC
Confidence 8888743 33 3 3345677777653
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.67 E-value=6.5e-08 Score=96.55 Aligned_cols=97 Identities=24% Similarity=0.365 Sum_probs=61.3
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++. +.+..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|++++. |. +..+++|+.|+|+
T Consensus 86 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 86 KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIG 159 (308)
T ss_dssp SCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECC
T ss_pred CCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEcc
Confidence 366677777776653 256667777777777777764 33 266777777777777777643 32 6677777777777
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|.+++ +|. + ..+.+++.|++++
T Consensus 160 ~n~l~~-~~~-l-~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 160 NAQVSD-LTP-L-ANLSKLTTLKADD 182 (308)
T ss_dssp SSCCCC-CGG-G-TTCTTCCEEECCS
T ss_pred CCcCCC-Chh-h-cCCCCCCEEECCC
Confidence 777763 444 3 3345666666653
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.66 E-value=5e-08 Score=97.39 Aligned_cols=97 Identities=20% Similarity=0.271 Sum_probs=78.7
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..+ +..+++|+.|+|++|.+++ ++. +..+++|+.|+|++|++++. |. +..+++|++|+|+
T Consensus 130 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLK 203 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECT
T ss_pred CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEcc
Confidence 47889999999987644 8899999999999999985 443 88999999999999999854 43 7889999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|++++ +|+ + ..+.+++.|+++.
T Consensus 204 ~N~l~~-~~~-l-~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 204 NNQISD-VSP-L-ANTSNLFIVTLTN 226 (308)
T ss_dssp TSCCCB-CGG-G-TTCTTCCEEEEEE
T ss_pred CCccCc-ccc-c-cCCCCCCEEEccC
Confidence 999995 443 4 4456788888763
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.66 E-value=5.2e-08 Score=106.41 Aligned_cols=95 Identities=31% Similarity=0.512 Sum_probs=50.8
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
|+.|+|++|.+.+. +.+..|++|+.|+|++|.+++. ..+..|++|+.|+|++|+|++..| +..+++|+.|+|++
T Consensus 111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence 45555666655542 3355555666666666665543 355555666666666666654444 55556666666666
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|+|++ +| .+.. +.+|..|+|+
T Consensus 185 N~i~~-l~-~l~~-l~~L~~L~L~ 205 (605)
T 1m9s_A 185 NHISD-LR-ALAG-LKNLDVLELF 205 (605)
T ss_dssp SCCCB-CG-GGTT-CTTCSEEECC
T ss_pred CCCCC-Ch-HHcc-CCCCCEEEcc
Confidence 65553 33 2322 3445555554
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.65 E-value=7.3e-08 Score=93.96 Aligned_cols=80 Identities=26% Similarity=0.497 Sum_probs=41.2
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCc--------------------cccCCCCCCEEecCCCcCC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS--------------------SLGTIASLEVLDLSYNFFN 481 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~--------------------~l~~l~~L~~L~Ls~N~l~ 481 (531)
++.|+|++|.+++..+ +.++++|+.|+|++|.+++ +|. .+..+++|+.|+|++|+++
T Consensus 65 L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC
T ss_pred CCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEECCCCcCC
Confidence 4555555555554333 5555555555555555553 222 3445555555555555555
Q ss_pred CCCcccccCCCCCCEEeccCCCCCC
Q 009603 482 GSIPESLGQLTALRRLNLNGNTLSG 506 (531)
Q Consensus 482 g~iP~~l~~l~~L~~L~L~~N~l~g 506 (531)
+ +| .+..+++|+.|+|++|++++
T Consensus 142 ~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 142 S-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp B-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred C-Ch-HHccCCCCCEEECCCCcCcc
Confidence 3 22 34555555555555555553
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.64 E-value=5.6e-08 Score=106.17 Aligned_cols=97 Identities=29% Similarity=0.377 Sum_probs=74.1
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.|+.|+|++|.|.+. +.+..|++|+.|+|++|.+.+ + +.+..|++|+.|+|++|+|++. ..+..|++|+.|+|+
T Consensus 88 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 88 NLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 467788888887753 367788888888888888875 3 3577888888888888888854 567888889999999
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|+|++..| + ..+.+|..|+|+.
T Consensus 162 ~N~l~~~~~--l-~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 162 DNQISDIVP--L-AGLTKLQNLYLSK 184 (605)
T ss_dssp SSCCCCCGG--G-TTCTTCCEEECCS
T ss_pred CCcCCCchh--h-ccCCCCCEEECcC
Confidence 998886555 4 4456788888874
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.63 E-value=4.6e-08 Score=98.87 Aligned_cols=99 Identities=25% Similarity=0.334 Sum_probs=82.4
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++. +.+..+++|+.|+|++|.+++. +.+..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 378899999998864 5688899999999999999854 468889999999999999998888889999999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|.+++..| + ..+.+++.|++++
T Consensus 320 ~n~l~~~~~--~-~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 320 QNHITDIRP--L-ASLSKMDSADFAN 342 (347)
T ss_dssp SSSCCCCGG--G-GGCTTCSEESSSC
T ss_pred CCccccccC--h-hhhhccceeehhh
Confidence 999996555 4 3456788888764
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.63 E-value=3.4e-09 Score=106.66 Aligned_cols=84 Identities=24% Similarity=0.283 Sum_probs=36.7
Q ss_pred EEEEEccCCCCccc-CcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCC-cCCC-CCcccccCCCCCCEEe
Q 009603 422 IDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNG-SIPESLGQLTALRRLN 498 (531)
Q Consensus 422 l~~L~L~~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g-~iP~~l~~l~~L~~L~ 498 (531)
++.|+|++|.+.+. ++..+..+++|+.|+|++|.+++..|..++++++|+.|+|++| .+++ .+|..+.++++|++|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 34444444444433 3344444444444444444444444444444444444444444 3333 1333344444444444
Q ss_pred ccCC-CCC
Q 009603 499 LNGN-TLS 505 (531)
Q Consensus 499 L~~N-~l~ 505 (531)
|++| .++
T Consensus 175 l~~~~~l~ 182 (336)
T 2ast_B 175 LSWCFDFT 182 (336)
T ss_dssp CCCCTTCC
T ss_pred CCCCCCcC
Confidence 4444 443
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.61 E-value=8e-10 Score=103.00 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=83.2
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+.+ +| .+.++++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus 49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence 37889999999987 56 8899999999999999999 788888888999999999999995 66 68889999999999
Q ss_pred CCCCCCCCCh-hhhhhccccceeeecc
Q 009603 501 GNTLSGRVPA-ALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~-~~~~~~~~l~~l~l~~ 526 (531)
+|+++ .+|. .....+.+++.|++..
T Consensus 124 ~N~i~-~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 124 NNKIT-NWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EEECC-CHHHHHHHTTTTTCSEEEECS
T ss_pred CCcCC-chhHHHHHhcCCCCCEEEecC
Confidence 99998 4543 2233456788888874
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.61 E-value=7.2e-09 Score=106.72 Aligned_cols=104 Identities=16% Similarity=0.307 Sum_probs=50.2
Q ss_pred EEEEEccCCCCc--c---cCcccccCCCCCCEEEccCCccC----ccCCccccCCCCCCEEecCCCcCCCC----Ccccc
Q 009603 422 IDGLGLDNQGLR--G---FLPNGISKLRHLQSINLSGNSIR----GAIPSSLGTIASLEVLDLSYNFFNGS----IPESL 488 (531)
Q Consensus 422 l~~L~L~~n~l~--g---~~p~~l~~L~~L~~L~Ls~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l 488 (531)
++.|+|++|.+. | .++..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 445555555554 2 22224455555555555555553 34444555555555555555555443 33333
Q ss_pred --cCCCCCCEEeccCCCCCC----CCChhhhhhccccceeeec
Q 009603 489 --GQLTALRRLNLNGNTLSG----RVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 489 --~~l~~L~~L~L~~N~l~g----~iP~~~~~~~~~l~~l~l~ 525 (531)
+++++|+.|+|++|.+++ .+|..+...+.++..|++.
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 225555555555555554 2444443334445555544
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.60 E-value=7.2e-10 Score=103.30 Aligned_cols=104 Identities=21% Similarity=0.183 Sum_probs=83.5
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc-ccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L 499 (531)
.++.|+|++|.++ .+|..+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++..+ ..+..+++|++|+|
T Consensus 71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 4788999999998 678788888999999999999996 55 68889999999999999984222 47889999999999
Q ss_pred cCCCCCCCCChh---------hhhhccccceeeeccc
Q 009603 500 NGNTLSGRVPAA---------LGGRLLHRASFKYVWA 527 (531)
Q Consensus 500 ~~N~l~g~iP~~---------~~~~~~~l~~l~l~~~ 527 (531)
++|.+++.+|.. ....+.+++.||-..+
T Consensus 148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i 184 (198)
T 1ds9_A 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPV 184 (198)
T ss_dssp CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGG
T ss_pred cCCccccccccccchHHHHHHHHHhCCCcEEECCccc
Confidence 999998776642 2344567788875444
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.60 E-value=7.9e-08 Score=104.10 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=71.4
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCC-------CEEecCCCcCCCCCcccccCCCC
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL-------EVLDLSYNFFNGSIPESLGQLTA 493 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~l~g~iP~~l~~l~~ 493 (531)
.++.|+|++|.|++ +|. +. ++|+.|+|++|.|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++
T Consensus 161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~ 231 (571)
T 3cvr_A 161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP 231 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence 37789999999887 666 65 88999999999998 7776 554 67 99999999998 68888888999
Q ss_pred CCEEeccCCCCCCCCChhhhhhcc
Q 009603 494 LRRLNLNGNTLSGRVPAALGGRLL 517 (531)
Q Consensus 494 L~~L~L~~N~l~g~iP~~~~~~~~ 517 (531)
|+.|+|++|.|+|.+|..+..+..
T Consensus 232 L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp TEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCEEEeeCCcCCCcCHHHHHHhhc
Confidence 999999999999989888877643
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.58 E-value=1.3e-07 Score=99.85 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=76.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++. | ++.+++|+.|+|++|.+++. | ++++++|+.|+|++|++++ +| ++++++|++|+|+
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 478899999999875 3 88899999999999999864 4 8889999999999999986 55 8889999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeeccc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVWA 527 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~~ 527 (531)
+|++++ +| ++ .+.+++.|++++.
T Consensus 136 ~N~l~~-l~--l~-~l~~L~~L~l~~n 158 (457)
T 3bz5_A 136 RNTLTE-ID--VS-HNTQLTELDCHLN 158 (457)
T ss_dssp TSCCSC-CC--CT-TCTTCCEEECTTC
T ss_pred CCccce-ec--cc-cCCcCCEEECCCC
Confidence 999986 54 33 3556788887654
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.57 E-value=1.4e-08 Score=102.18 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=91.2
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCcc-CCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEec
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (531)
.++.|++++|.+.+..+. +.++++|+.|+|++|.+++. +|..+..+++|+.|+|++|++++..|..++++++|++|+|
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 478899999999987665 66899999999999999876 8888999999999999999999999999999999999999
Q ss_pred cCC-CCCCC-CChhhhhhccccceeeeccc
Q 009603 500 NGN-TLSGR-VPAALGGRLLHRASFKYVWA 527 (531)
Q Consensus 500 ~~N-~l~g~-iP~~~~~~~~~l~~l~l~~~ 527 (531)
++| .+++. +|..+. .+.+++.|++++.
T Consensus 150 ~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTLLS-SCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHHHH-HCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHHHh-cCCCCCEEcCCCC
Confidence 999 78763 555454 4568999998865
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.56 E-value=1.5e-07 Score=91.74 Aligned_cols=96 Identities=26% Similarity=0.384 Sum_probs=68.1
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc---------------
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--------------- 486 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~--------------- 486 (531)
++.|+|++|+++. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|++++ +|.
T Consensus 43 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~ 117 (263)
T 1xeu_A 43 VQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNE 117 (263)
T ss_dssp CSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSC
T ss_pred CcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCc
Confidence 7789999999985 45 78999999999999999996544 8999999999999999885 332
Q ss_pred -----cccCCCCCCEEeccCCCCCCCCChhhhhhccccceeeec
Q 009603 487 -----SLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 487 -----~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
.+..+++|+.|+|++|++++ +| .+.. +.+++.|+++
T Consensus 118 l~~~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~-l~~L~~L~L~ 158 (263)
T 1xeu_A 118 LRDTDSLIHLKNLEILSIRNNKLKS-IV-MLGF-LSKLEVLDLH 158 (263)
T ss_dssp CSBSGGGTTCTTCCEEECTTSCCCB-CG-GGGG-CTTCCEEECT
T ss_pred cCCChhhcCcccccEEECCCCcCCC-Ch-HHcc-CCCCCEEECC
Confidence 24445555555555555552 33 2222 3445555554
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.56 E-value=1.7e-08 Score=103.16 Aligned_cols=106 Identities=24% Similarity=0.311 Sum_probs=72.5
Q ss_pred EEEEEccCCCCcccCcccccCC-----CCCCEEEccCCccCccCCccc----cCC-CCCCEEecCCCcCCCCCccccc--
Q 009603 422 IDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSL----GTI-ASLEVLDLSYNFFNGSIPESLG-- 489 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~ip~~l----~~l-~~L~~L~Ls~N~l~g~iP~~l~-- 489 (531)
++.|+|++|.+.+..+..+..+ ++|+.|+|++|.+++..+..+ ..+ ++|+.|+|++|++++..+..+.
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 6778888888887766666664 788888888888876666543 334 7888888888888766554433
Q ss_pred --C-CCCCCEEeccCCCCCCCCChhh----hhhccccceeeeccc
Q 009603 490 --Q-LTALRRLNLNGNTLSGRVPAAL----GGRLLHRASFKYVWA 527 (531)
Q Consensus 490 --~-l~~L~~L~L~~N~l~g~iP~~~----~~~~~~l~~l~l~~~ 527 (531)
. .++|++|+|++|.+++.-+..+ .....+++.|++++.
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 3 2578888888888875443333 333346777777643
No 126
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.54 E-value=1.4e-07 Score=99.66 Aligned_cols=95 Identities=26% Similarity=0.360 Sum_probs=49.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.+.+..+ +..+++|+.|+|++|.+++..| +..+++|+.|++++|++++. ..+.++++|+.|+|++
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGH 362 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCC
Confidence 4555555555554332 5555555555665555554433 45555555555555555543 2455555566666666
Q ss_pred CCCCCCCChhhhhhccccceeeec
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
|++++..| + ..+.++..|++.
T Consensus 363 n~l~~~~~--~-~~l~~L~~L~l~ 383 (466)
T 1o6v_A 363 NQISDLTP--L-ANLTRITQLGLN 383 (466)
T ss_dssp SCCCBCGG--G-TTCTTCCEEECC
T ss_pred CccCccch--h-hcCCCCCEEecc
Confidence 65555444 2 223344444443
No 127
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.51 E-value=2.2e-07 Score=93.81 Aligned_cols=100 Identities=23% Similarity=0.398 Sum_probs=85.6
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..+ +..+++|+.|+|++|.+++ + +.+..+++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLN 295 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECC
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECc
Confidence 47899999999987544 8999999999999999985 3 478999999999999999995 44 58899999999999
Q ss_pred CCCCCCCCChhhhhhccccceeeeccc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVWA 527 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~~ 527 (531)
+|.+++..|..+.. +.+++.|++++.
T Consensus 296 ~n~l~~~~~~~l~~-l~~L~~L~L~~n 321 (347)
T 4fmz_A 296 NNQLGNEDMEVIGG-LTNLTTLFLSQN 321 (347)
T ss_dssp SSCCCGGGHHHHHT-CTTCSEEECCSS
T ss_pred CCcCCCcChhHhhc-cccCCEEEccCC
Confidence 99999777776765 567899998753
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.50 E-value=4.5e-08 Score=99.95 Aligned_cols=106 Identities=23% Similarity=0.249 Sum_probs=89.2
Q ss_pred EEEEEccCCCCcccCc----ccccCCC-CCCEEEccCCccCccCCccccCC-----CCCCEEecCCCcCCCCCccccc--
Q 009603 422 IDGLGLDNQGLRGFLP----NGISKLR-HLQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSYNFFNGSIPESLG-- 489 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p----~~l~~L~-~L~~L~Ls~N~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g~iP~~l~-- 489 (531)
++.|+|++|.+++..+ ..+..++ +|+.|+|++|.+++..+..+..+ ++|+.|+|++|++++..+..+.
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 8899999999998777 7788898 89999999999998878777765 9999999999999988777544
Q ss_pred --CC-CCCCEEeccCCCCCCCCChhhhhh----ccccceeeeccc
Q 009603 490 --QL-TALRRLNLNGNTLSGRVPAALGGR----LLHRASFKYVWA 527 (531)
Q Consensus 490 --~l-~~L~~L~L~~N~l~g~iP~~~~~~----~~~l~~l~l~~~ 527 (531)
.+ ++|+.|+|++|.+++..+..+... +.+++.|++++.
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 44 899999999999997666666554 457899998853
No 129
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.50 E-value=2.1e-07 Score=98.35 Aligned_cols=97 Identities=23% Similarity=0.349 Sum_probs=73.2
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
.++.|+|++|.+++..+ +..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++++..| +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 36788888888876544 7788888888888888886443 7788888888888888887655 6788888888888
Q ss_pred CCCCCCCCChhhhhhccccceeeecc
Q 009603 501 GNTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
+|.+++. | .+. .+.+++.|++++
T Consensus 340 ~n~l~~~-~-~l~-~l~~L~~L~l~~ 362 (466)
T 1o6v_A 340 NNKVSDV-S-SLA-NLTNINWLSAGH 362 (466)
T ss_dssp SSCCCCC-G-GGT-TCTTCCEEECCS
T ss_pred CCccCCc-h-hhc-cCCCCCEEeCCC
Confidence 8888853 3 343 356777887764
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.48 E-value=2.3e-08 Score=102.94 Aligned_cols=105 Identities=20% Similarity=0.199 Sum_probs=65.4
Q ss_pred EEEEEccCC---CCcccCcccc-------cCCCCCCEEEccCCccCc----cCCccccCCCCCCEEecCCCcCCCCCccc
Q 009603 422 IDGLGLDNQ---GLRGFLPNGI-------SKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPES 487 (531)
Q Consensus 422 l~~L~L~~n---~l~g~~p~~l-------~~L~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~ 487 (531)
++.|+|++| .+.+.+|..+ ..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++..+..
T Consensus 62 L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 141 (386)
T 2ca6_A 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 141 (386)
T ss_dssp CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH
T ss_pred ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH
Confidence 667777774 3445555544 567777777777777776 46666777777777777777775433333
Q ss_pred ----ccCC---------CCCCEEeccCCCCC-CCCCh--hhhhhccccceeeecc
Q 009603 488 ----LGQL---------TALRRLNLNGNTLS-GRVPA--ALGGRLLHRASFKYVW 526 (531)
Q Consensus 488 ----l~~l---------~~L~~L~L~~N~l~-g~iP~--~~~~~~~~l~~l~l~~ 526 (531)
+..+ ++|++|+|++|+++ +.+|. .....+.+++.|++++
T Consensus 142 l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 142 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence 3233 67777777777776 33443 2223455666776664
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.43 E-value=4.4e-07 Score=95.64 Aligned_cols=92 Identities=21% Similarity=0.296 Sum_probs=46.6
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|++++|.+++ +|.. +.+|+.|+|++|.+++ +| .++++++|+.|++++|++++ +|... ++|+.|++++
T Consensus 155 L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGN 224 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCS
T ss_pred CCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcC
Confidence 4455555555543 3322 1345555555555553 34 35555555555555555553 33321 3556666666
Q ss_pred CCCCCCCChhhhhhccccceeeecc
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|.++ .+|. ++ .+.+++.|++++
T Consensus 225 n~l~-~lp~-~~-~l~~L~~L~l~~ 246 (454)
T 1jl5_A 225 NILE-ELPE-LQ-NLPFLTTIYADN 246 (454)
T ss_dssp SCCS-SCCC-CT-TCTTCCEEECCS
T ss_pred CcCC-cccc-cC-CCCCCCEEECCC
Confidence 6665 5653 32 344566666653
No 132
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=6.2e-08 Score=94.46 Aligned_cols=86 Identities=24% Similarity=0.301 Sum_probs=66.7
Q ss_pred cCCCCCCEEEccCCccCc--cCCccccCCCCCCEEecCCCcCCCCCcccccCCC--CCCEEeccCCCCCCCCCh------
Q 009603 441 SKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT--ALRRLNLNGNTLSGRVPA------ 510 (531)
Q Consensus 441 ~~L~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~L~~N~l~g~iP~------ 510 (531)
.++++|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 567889999999999997 6677778899999999999999864 3344444 899999999999988873
Q ss_pred hhhhhccccceeeecccc
Q 009603 511 ALGGRLLHRASFKYVWAM 528 (531)
Q Consensus 511 ~~~~~~~~l~~l~l~~~~ 528 (531)
.+...+.+|..||-..+.
T Consensus 245 ~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 245 AIRERFPKLLRLDGHELP 262 (267)
T ss_dssp HHHHHCTTCCEESSCBCC
T ss_pred HHHHHCcccCeECCcCCC
Confidence 344566678888765544
No 133
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.41 E-value=2.8e-07 Score=97.23 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=49.5
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCC-------CCCEEecCCCcCCCCCcccccCCCCC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA-------SLEVLDLSYNFFNGSIPESLGQLTAL 494 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~-------~L~~L~Ls~N~l~g~iP~~l~~l~~L 494 (531)
++.|+|++|.+++ +| +..+++|+.|+|++|.+++..+..+.+|. +|+.|++++|.+.|.+| ++.+++|
T Consensus 214 L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L 288 (457)
T 3bz5_A 214 LTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKI 288 (457)
T ss_dssp CSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred CCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccC
Confidence 5566666666665 33 55666666666666666654444444433 44555555555555555 3456666
Q ss_pred CEEeccCCCCCCCCCh
Q 009603 495 RRLNLNGNTLSGRVPA 510 (531)
Q Consensus 495 ~~L~L~~N~l~g~iP~ 510 (531)
+.|+|++|.+.|.+|.
T Consensus 289 ~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDC 304 (457)
T ss_dssp CCCCCTTCTTCCEEEC
T ss_pred CEEECCCCcccceecc
Confidence 7777777766666664
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.41 E-value=2.7e-07 Score=100.96 Aligned_cols=86 Identities=30% Similarity=0.396 Sum_probs=76.0
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.|++ +| ..+++|+.|+|++|.|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 7889999999997 45 55789999999999999 6776 6789999999999999 8899999999999999999
Q ss_pred CCCCCCCChhhhhhc
Q 009603 502 NTLSGRVPAALGGRL 516 (531)
Q Consensus 502 N~l~g~iP~~~~~~~ 516 (531)
|.++|.+|..+..+.
T Consensus 294 N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 294 NPLSERTLQALREIT 308 (622)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHhcc
Confidence 999999888776654
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.40 E-value=1.9e-07 Score=98.47 Aligned_cols=87 Identities=26% Similarity=0.418 Sum_probs=53.5
Q ss_pred EEEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCC--CCcccccCC-------
Q 009603 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG--SIPESLGQL------- 491 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~iP~~l~~l------- 491 (531)
.++.|+|++|.+++ +|.. +++|+.|+|++|.++ .+|. .+++|+.|+|++|++++ .+|..++.+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 37889999999987 5543 588999999999999 5776 57899999999999998 888888877
Q ss_pred ------CCCCEEeccCCCCCC--CCChhhhhh
Q 009603 492 ------TALRRLNLNGNTLSG--RVPAALGGR 515 (531)
Q Consensus 492 ------~~L~~L~L~~N~l~g--~iP~~~~~~ 515 (531)
++|+.|+|++|+++| .+|.++..+
T Consensus 390 ~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp --------------------------------
T ss_pred ccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 889999999999997 888877554
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.28 E-value=1.7e-06 Score=94.72 Aligned_cols=91 Identities=26% Similarity=0.291 Sum_probs=72.1
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.|+|++|.++. +|. .+++|+.|+|++|.+++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++
T Consensus 203 L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 203 LYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp CCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred hhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence 5566666666663 332 24789999999999985 66 45688999999999999 6776 678999999999
Q ss_pred CCCCCCCChhhhhhccccceeeecc
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|+|+ .+|..+.. +.++..|++++
T Consensus 271 N~L~-~lp~~l~~-l~~L~~L~L~~ 293 (622)
T 3g06_A 271 NQLT-RLPESLIH-LSSETTVNLEG 293 (622)
T ss_dssp SCCC-SCCGGGGG-SCTTCEEECCS
T ss_pred CCCC-cCCHHHhh-ccccCEEEecC
Confidence 9999 89988765 46788888874
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.22 E-value=1.5e-06 Score=88.22 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=78.7
Q ss_pred EEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcc-cccCCCCCCE-EeccC
Q 009603 424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRR-LNLNG 501 (531)
Q Consensus 424 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~-L~L~~ 501 (531)
.++.++++|+ .+|..+ .++|+.|+|++|+|+..-+..|.+|++|+.|+|++|++.+.+|. .|.++++|+. +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4678899988 567665 46899999999999954446799999999999999999877775 6788988775 67778
Q ss_pred CCCCCCCChhhhhhccccceeeecc
Q 009603 502 NTLSGRVPAALGGRLLHRASFKYVW 526 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l~~ 526 (531)
|+++ .+|+.....+.+|+.|++..
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~l~~ 113 (350)
T 4ay9_X 90 NNLL-YINPEAFQNLPNLQYLLISN 113 (350)
T ss_dssp TTCC-EECTTSBCCCTTCCEEEEEE
T ss_pred Cccc-ccCchhhhhccccccccccc
Confidence 9999 56555445567888888864
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.08 E-value=3.1e-07 Score=96.36 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=37.7
Q ss_pred CCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCCCccccc-----CCCCCCEEeccCCCCCCC----CCh
Q 009603 444 RHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPESLG-----QLTALRRLNLNGNTLSGR----VPA 510 (531)
Q Consensus 444 ~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~-----~l~~L~~L~L~~N~l~g~----iP~ 510 (531)
++|+.|+|++|.+++. ++..+..+++|+.|+|++|.++...+..+. .+++|+.|+|++|.+++. +|.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 3455555555554432 233344445555555555555433222222 234555555555555532 333
Q ss_pred hhhhhccccceeeecc
Q 009603 511 ALGGRLLHRASFKYVW 526 (531)
Q Consensus 511 ~~~~~~~~l~~l~l~~ 526 (531)
.+. .+.+++.|++++
T Consensus 222 ~l~-~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 222 IVA-SKASLRELALGS 236 (461)
T ss_dssp HHH-HCTTCCEEECCS
T ss_pred HHH-hCCCccEEeccC
Confidence 332 234455555553
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.08 E-value=1.5e-06 Score=84.55 Aligned_cols=77 Identities=27% Similarity=0.304 Sum_probs=64.5
Q ss_pred EEEEEEccCCCCcc--cCcccccCCCCCCEEEccCCccCccCCccccCCC--CCCEEecCCCcCCCCCcc-------ccc
Q 009603 421 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA--SLEVLDLSYNFFNGSIPE-------SLG 489 (531)
Q Consensus 421 ~l~~L~L~~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~L~Ls~N~l~g~iP~-------~l~ 489 (531)
.|+.|+|++|.|++ .+|..+..+++|+.|+|++|.|++. ..+..+. +|+.|+|++|.+++.+|. .+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 48899999999998 5667788999999999999999975 3444444 999999999999988873 367
Q ss_pred CCCCCCEEec
Q 009603 490 QLTALRRLNL 499 (531)
Q Consensus 490 ~l~~L~~L~L 499 (531)
.+++|+.||-
T Consensus 249 ~~P~L~~LDg 258 (267)
T 3rw6_A 249 RFPKLLRLDG 258 (267)
T ss_dssp HCTTCCEESS
T ss_pred HCcccCeECC
Confidence 8999998863
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.04 E-value=5.1e-07 Score=94.71 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=68.0
Q ss_pred EEEEEEccCCCCccc----CcccccCCCCCCEEEccCCccCccCCccccC-----CCCCCEEecCCCcCCC----CCccc
Q 009603 421 VIDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGAIPSSLGT-----IASLEVLDLSYNFFNG----SIPES 487 (531)
Q Consensus 421 ~l~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g----~iP~~ 487 (531)
.++.|+|++|.+++. ++..+..+++|+.|+|++|.+++..+..+.. +++|+.|+|++|++++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 477888888888765 5666777888888999888887655544432 6788899999988886 77888
Q ss_pred ccCCCCCCEEeccCCCCCCC
Q 009603 488 LGQLTALRRLNLNGNTLSGR 507 (531)
Q Consensus 488 l~~l~~L~~L~L~~N~l~g~ 507 (531)
+..+++|++|+|++|++++.
T Consensus 394 l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHCCCCCEEECCSSSCCHH
T ss_pred HHhCCCccEEECCCCCCCHH
Confidence 88888899999998888754
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.90 E-value=2.5e-06 Score=87.46 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=38.0
Q ss_pred EEEEEccCCCCcccCcccc-----cCCCCCCEEEccCCccCc----cCCccccCCCCCCEEecCCCcCCC----CCcccc
Q 009603 422 IDGLGLDNQGLRGFLPNGI-----SKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNG----SIPESL 488 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l-----~~L~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g----~iP~~l 488 (531)
++.|+|++|.|+..-...+ ...+.|+.|+|++|.++. .++..+..+++|+.|+|++|.|+. .++..+
T Consensus 128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207 (372)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence 4555555555543222222 123445555555555542 122333445555555555555442 123334
Q ss_pred cCCCCCCEEeccCCCCC
Q 009603 489 GQLTALRRLNLNGNTLS 505 (531)
Q Consensus 489 ~~l~~L~~L~L~~N~l~ 505 (531)
...++|+.|+|++|.++
T Consensus 208 ~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAG 224 (372)
T ss_dssp GGCSCCCEEECCSSCCC
T ss_pred hcCCCcCeEECCCCCCC
Confidence 44445555555555554
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=2.3e-05 Score=78.58 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=82.9
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCC-EEecCCCcCCCCCcccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE-VLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (531)
++.|+|++|+++...+..|.++++|+.|+|++| +...-+..|..|++|+ .++|.. +++..-+..|.++++|+.|+|+
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 778999999998777778999999999999998 7755557899999999 999998 7774555789999999999999
Q ss_pred CCCCCCCCChhhhhhccccceee
Q 009603 501 GNTLSGRVPAALGGRLLHRASFK 523 (531)
Q Consensus 501 ~N~l~g~iP~~~~~~~~~l~~l~ 523 (531)
.|++. .|+...+..+.+|+.+.
T Consensus 306 ~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 306 GDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SSCCC-EECTTTTCTTCCCCEEE
T ss_pred CCccC-ccchhhhcCCcchhhhc
Confidence 99999 78776666666666553
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.67 E-value=8.6e-06 Score=74.76 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=34.3
Q ss_pred EEEEEccCCCCcc----cCcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEec--CCCcCCCC----Cccc
Q 009603 422 IDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDL--SYNFFNGS----IPES 487 (531)
Q Consensus 422 l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~L--s~N~l~g~----iP~~ 487 (531)
++.|+|++|.+.. .+...+...+.|+.|+|++|.++.. +...+...+.|+.|+| ++|.+... +...
T Consensus 67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~ 146 (185)
T 1io0_A 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146 (185)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence 4444555554432 1222233334445555555544422 2233344444555555 44444421 1122
Q ss_pred ccCCCCCCEEeccCCCC
Q 009603 488 LGQLTALRRLNLNGNTL 504 (531)
Q Consensus 488 l~~l~~L~~L~L~~N~l 504 (531)
+...+.|+.|+|+.|.+
T Consensus 147 L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHCSSCCEEECCCSSH
T ss_pred HHhCCCcCEEeccCCCC
Confidence 33334455555544443
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.66 E-value=6e-06 Score=89.39 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=54.0
Q ss_pred EEEEEccCCC--CcccCcccccC-CCCCCEEEccCCccCc-cCCccccCCCCCCEEecCCCcCCCC-CcccccCCCCCCE
Q 009603 422 IDGLGLDNQG--LRGFLPNGISK-LRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRR 496 (531)
Q Consensus 422 l~~L~L~~n~--l~g~~p~~l~~-L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~ 496 (531)
++.|+|+.+. +++.....+.. +++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++. ++..+..+++|+.
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 5667775432 44444444433 6777777777777765 3444556777777777777776543 3334456777777
Q ss_pred EeccCCCCCCC
Q 009603 497 LNLNGNTLSGR 507 (531)
Q Consensus 497 L~L~~N~l~g~ 507 (531)
|+|++|++++.
T Consensus 518 L~ls~n~it~~ 528 (592)
T 3ogk_B 518 LWVQGYRASMT 528 (592)
T ss_dssp EEEESCBCCTT
T ss_pred eECcCCcCCHH
Confidence 77777777643
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.60 E-value=9.4e-06 Score=83.15 Aligned_cols=93 Identities=22% Similarity=0.276 Sum_probs=72.9
Q ss_pred EEEEEccCCCCcc----cCcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCC----Cccccc
Q 009603 422 IDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESLG 489 (531)
Q Consensus 422 l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~ 489 (531)
++.|+|++|.|+. .++..+..+++|+.|+|++|.++.. ++..+..+++|+.|+|++|.|+.. ++..+.
T Consensus 157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~ 236 (372)
T 3un9_A 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR 236 (372)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH
T ss_pred cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH
Confidence 7899999999874 3455667899999999999999753 356677888999999999999852 444566
Q ss_pred CCCCCCEEeccCCCCCCCCChhhhh
Q 009603 490 QLTALRRLNLNGNTLSGRVPAALGG 514 (531)
Q Consensus 490 ~l~~L~~L~L~~N~l~g~iP~~~~~ 514 (531)
..++|++|+|++|.|+..-...+..
T Consensus 237 ~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 237 EHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred hCCCCCEEeccCCCCCHHHHHHHHH
Confidence 6789999999999998544444444
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.56 E-value=1.2e-05 Score=87.00 Aligned_cols=103 Identities=15% Similarity=0.039 Sum_probs=62.5
Q ss_pred EEEEEEccCCCCc----ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcC----------------
Q 009603 421 VIDGLGLDNQGLR----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF---------------- 480 (531)
Q Consensus 421 ~l~~L~L~~n~l~----g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l---------------- 480 (531)
.++.|+|++|.++ +.++..+.++++|+.|+|++|.+.+ +|..+..+++|+.|+++.+..
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 4788999999987 3445566788999999999998874 455555555566555543211
Q ss_pred ----------CCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccccceeee
Q 009603 481 ----------NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKY 524 (531)
Q Consensus 481 ----------~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~l~~l~l 524 (531)
.+.+|..+..+++|++|+|++|.+++.....+...+.+++.|++
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 12344445555566666666666544333232333444555544
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.38 E-value=1.6e-05 Score=85.97 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=50.3
Q ss_pred EEEEEccCCCCcccCcccccC-CCCCCEEEccCCccCccCCccc-cCCCCCCEEecCCCcCCCCCcc-cccCCCCCCEEe
Q 009603 422 IDGLGLDNQGLRGFLPNGISK-LRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLN 498 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~-L~~L~~L~Ls~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~ 498 (531)
++.|+|++ .+++.....+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. .+..+++|+.|+
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 56677755 555444444544 6677777777777665544444 4567777777777776543332 233466777777
Q ss_pred ccCCCCC
Q 009603 499 LNGNTLS 505 (531)
Q Consensus 499 L~~N~l~ 505 (531)
|++|.++
T Consensus 513 l~~~~~~ 519 (594)
T 2p1m_B 513 MSSCSVS 519 (594)
T ss_dssp EESSCCB
T ss_pred eeCCCCC
Confidence 7777664
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.35 E-value=3.4e-05 Score=83.37 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=25.8
Q ss_pred EEEEEccCCCCcccCccccc-CCCCCCEEEccCC-ccCcc-CCccccCCCCCCEEecCCCcCCC
Q 009603 422 IDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGN-SIRGA-IPSSLGTIASLEVLDLSYNFFNG 482 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N-~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g 482 (531)
++.|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++..+.++++|+.|+|++|.+++
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 34445554444443333333 3444555555444 22211 22222344445555554444443
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.20 E-value=4.9e-05 Score=69.66 Aligned_cols=105 Identities=19% Similarity=0.325 Sum_probs=79.5
Q ss_pred EEEEEccCC-CCcc----cCcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCC----Ccccc
Q 009603 422 IDGLGLDNQ-GLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL 488 (531)
Q Consensus 422 l~~L~L~~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l 488 (531)
++.|+|++| .+.. .+...+...++|+.|+|++|.+... +...+...+.|+.|+|++|.|... +...+
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L 117 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL 117 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence 778999999 8864 2445677789999999999999743 344566678999999999999853 45667
Q ss_pred cCCCCCCEEec--cCCCCCCCCChhhhhhc---cccceeeecc
Q 009603 489 GQLTALRRLNL--NGNTLSGRVPAALGGRL---LHRASFKYVW 526 (531)
Q Consensus 489 ~~l~~L~~L~L--~~N~l~g~iP~~~~~~~---~~l~~l~l~~ 526 (531)
...+.|++|+| +.|.+...--..+...+ ..++.|++++
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 78889999999 88999854333344332 4678888875
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.08 E-value=0.00074 Score=67.40 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=53.4
Q ss_pred CCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCC-EEeccCCCCCCCCChhhhhhccccce
Q 009603 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR-RLNLNGNTLSGRVPAALGGRLLHRAS 521 (531)
Q Consensus 443 L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~-~L~L~~N~l~g~iP~~~~~~~~~l~~ 521 (531)
+++|+.|+|++|+++..-+..|..|++|+.|+|++| +...-+..|.++.+|+ .|+|.+ .++ .|++..+..+.+|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence 567777777777777444456777777777777776 5533345677777777 777776 555 566655555666777
Q ss_pred eee
Q 009603 522 FKY 524 (531)
Q Consensus 522 l~l 524 (531)
+++
T Consensus 302 l~l 304 (329)
T 3sb4_A 302 VLA 304 (329)
T ss_dssp EEE
T ss_pred EEe
Confidence 766
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.88 E-value=0.00033 Score=63.42 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=64.3
Q ss_pred eEEEEEEccCCCCcccCcccccCCCCCCEEEccCCc-cCccCCccccCC----CCCCEEecCCCc-CCCCCcccccCCCC
Q 009603 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTI----ASLEVLDLSYNF-FNGSIPESLGQLTA 493 (531)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~ip~~l~~l----~~L~~L~Ls~N~-l~g~iP~~l~~l~~ 493 (531)
..|+.|+|+++.++..--..+.++++|+.|+|+++. ++..--..+..+ ++|+.|+|+++. ++-.--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 359999999999875433567899999999999985 765444456654 479999999974 66332245778999
Q ss_pred CCEEeccCCC
Q 009603 494 LRRLNLNGNT 503 (531)
Q Consensus 494 L~~L~L~~N~ 503 (531)
|+.|+|++..
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999875
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.39 E-value=0.0056 Score=52.42 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=41.8
Q ss_pred EEEccCCCCc-ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCC
Q 009603 424 GLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481 (531)
Q Consensus 424 ~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 481 (531)
.++.++++|+ ..+|..+ -.+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5778888886 3455433 246889999999998555566788888999999998775
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.32 E-value=0.00067 Score=68.98 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=16.3
Q ss_pred CCCCCEEecCCCcCCCC----CcccccCCCCCCEEeccCCCCC
Q 009603 467 IASLEVLDLSYNFFNGS----IPESLGQLTALRRLNLNGNTLS 505 (531)
Q Consensus 467 l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~ 505 (531)
+++|+.|+|+.|.+... ++..+..+++|+.|+|+.|.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 34444444444444431 2222233444444444444443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.08 E-value=0.0026 Score=64.53 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=64.7
Q ss_pred EEEEEccCCCCcccCccccc--CCCCCCEEEccC--CccCcc-----CCccc--cCCCCCCEEecCCCcCCCCCccccc-
Q 009603 422 IDGLGLDNQGLRGFLPNGIS--KLRHLQSINLSG--NSIRGA-----IPSSL--GTIASLEVLDLSYNFFNGSIPESLG- 489 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~--~L~~L~~L~Ls~--N~l~g~-----ip~~l--~~l~~L~~L~Ls~N~l~g~iP~~l~- 489 (531)
|+.|.|..+++....-..++ .+++|+.|+|+. |...|. +...+ ..+++|+.|+|.+|.+....+..+.
T Consensus 195 L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~ 274 (362)
T 2ra8_A 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274 (362)
T ss_dssp CSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH
T ss_pred CcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh
Confidence 66777777766543333343 688888888753 222221 11122 2478899999988887754443333
Q ss_pred --CCCCCCEEeccCCCCCCCCChhhh---hhccccceeeecc
Q 009603 490 --QLTALRRLNLNGNTLSGRVPAALG---GRLLHRASFKYVW 526 (531)
Q Consensus 490 --~l~~L~~L~L~~N~l~g~iP~~~~---~~~~~l~~l~l~~ 526 (531)
.+++|++|+|+.|.+.+.-+..+. ..+.+|+.|++++
T Consensus 275 a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 477899999999988754222222 2356788888864
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.69 E-value=0.013 Score=60.17 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=65.5
Q ss_pred EEEEEccCCCCc-----ccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCE
Q 009603 422 IDGLGLDNQGLR-----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496 (531)
Q Consensus 422 l~~L~L~~n~l~-----g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 496 (531)
|+.|.|.++.+. ..-+..|.++++|+.++|. +.+.-.-...|..|++|+.+.|..| ++..-+..|.++ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 667777776654 2334567788888888888 4466444567788888888888654 553344577888 8899
Q ss_pred EeccCCCCCCCCCh-hhhhhccccceeee
Q 009603 497 LNLNGNTLSGRVPA-ALGGRLLHRASFKY 524 (531)
Q Consensus 497 L~L~~N~l~g~iP~-~~~~~~~~l~~l~l 524 (531)
|.+++|.+. .++. .+.++..++..|.+
T Consensus 350 l~l~~n~~~-~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 350 VKVEGTTPP-QVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp EEECCSSCC-BCCCSSCCCSCTTCCEEEE
T ss_pred EEEcCCCCc-ccccccccCCCCCccEEEe
Confidence 999888876 4443 34444344444443
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.66 E-value=0.018 Score=49.15 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=35.8
Q ss_pred EEEccCCccC-ccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCC
Q 009603 448 SINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505 (531)
Q Consensus 448 ~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 505 (531)
.++.+++.|+ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777775 35554432 35777777777777433445666777777777777664
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.48 E-value=0.0049 Score=55.69 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=60.2
Q ss_pred CCCCEEEccCCccCccCCccccCCCCCCEEecCCCc-CCCCCcccccCC----CCCCEEeccCCC-CCCCCChhhhhhcc
Q 009603 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-FNGSIPESLGQL----TALRRLNLNGNT-LSGRVPAALGGRLL 517 (531)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~L~~N~-l~g~iP~~~~~~~~ 517 (531)
-.|+.|||+++.++..--..+..|++|+.|+|+++. ++..--..++.+ ++|++|+|+++. ++..==..+.. +.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CC
Confidence 369999999999876545567899999999999985 553222345554 379999999975 65211123443 47
Q ss_pred ccceeeecccc
Q 009603 518 HRASFKYVWAM 528 (531)
Q Consensus 518 ~l~~l~l~~~~ 528 (531)
+|+.|+++.+.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 78999998764
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.42 E-value=0.022 Score=58.51 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=45.3
Q ss_pred EEEEccCCCCcccCcccccCCCCCCEEEccCCccC-----ccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEE
Q 009603 423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-----GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497 (531)
Q Consensus 423 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 497 (531)
+.+.| .+++...-...|.++++|+.++|.+|.+. ..-+..|..|++|+.++|. +.+.-.-...|.++.+|+.|
T Consensus 251 ~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 251 TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEE
T ss_pred cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEE
Confidence 34444 23343333445555555666555555443 1222345555556665555 23442222345555556655
Q ss_pred eccCCCCCCCCChhhhhhccccceeeec
Q 009603 498 NLNGNTLSGRVPAALGGRLLHRASFKYV 525 (531)
Q Consensus 498 ~L~~N~l~g~iP~~~~~~~~~l~~l~l~ 525 (531)
.|..| ++ .|+...+..+ +++.+.+.
T Consensus 329 ~lp~~-l~-~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 329 TIPAN-VT-QINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EECTT-CC-EECTTSSSSS-CCCEEEEC
T ss_pred EECcc-cc-EEcHHhCCCC-CCCEEEEc
Confidence 55433 33 3443333333 45555543
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.68 E-value=0.0077 Score=55.39 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=15.9
Q ss_pred EEEEEccCCCCcc----cCcccccCCCCCCEEEccCCccC
Q 009603 422 IDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIR 457 (531)
Q Consensus 422 l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~ 457 (531)
|+.|+|++|.|.. .+...+..-+.|+.|+|++|.|+
T Consensus 72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4455555555442 11222333344555555555554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.26 E-value=0.44 Score=47.84 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=53.3
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCc-ccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L~ 500 (531)
++.+.+.. ++...-...+.++++|+.+.+.++.+.-.-...|.+|.+|+.+.|..+ ++ .|. .+|.++.+|+.+.+.
T Consensus 265 l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 265 LKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred hccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence 44555543 344333456778888888888888777444567888888998888754 55 333 467888888888776
Q ss_pred CC
Q 009603 501 GN 502 (531)
Q Consensus 501 ~N 502 (531)
.+
T Consensus 342 ~~ 343 (379)
T 4h09_A 342 KS 343 (379)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.59 E-value=1.1 Score=45.34 Aligned_cols=78 Identities=14% Similarity=0.278 Sum_probs=49.0
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCC-cccccCCCCCCEEecc
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNLN 500 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~L~ 500 (531)
|+.+.+. +++...-...|.++.+|+.++|..+ ++-.-...|..|.+|+.+.|..+ ++ .| ..+|.++.+|+.+++.
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEES
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEEC
Confidence 4556664 3344333456777778888877654 44233456777888888877644 55 34 3467778888888777
Q ss_pred CCC
Q 009603 501 GNT 503 (531)
Q Consensus 501 ~N~ 503 (531)
+|.
T Consensus 366 ~~~ 368 (394)
T 4gt6_A 366 GSR 368 (394)
T ss_dssp SCH
T ss_pred Cce
Confidence 664
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.71 E-value=0.22 Score=45.62 Aligned_cols=106 Identities=14% Similarity=0.209 Sum_probs=71.1
Q ss_pred EEEEEEccCC-CCcc----cCcccccCCCCCCEEEccCCccCcc----CCccccCCCCCCEEecCCCcCCCC----Cccc
Q 009603 421 VIDGLGLDNQ-GLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPES 487 (531)
Q Consensus 421 ~l~~L~L~~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~ 487 (531)
.++.|+|++| .|.. .+-..+..-+.|+.|+|++|.+... +-..+..-+.|+.|+|+.|.|... +-+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 3789999986 6652 2345567778999999999999733 233455568899999999999842 3344
Q ss_pred ccCCCCCCEEeccCCC---CCCCCChhhhhhc---cccceeeecc
Q 009603 488 LGQLTALRRLNLNGNT---LSGRVPAALGGRL---LHRASFKYVW 526 (531)
Q Consensus 488 l~~l~~L~~L~L~~N~---l~g~iP~~~~~~~---~~l~~l~l~~ 526 (531)
+..-+.|+.|+|++|. +....-..+...+ ..+..|++.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 5566779999998653 3322212233322 3566777764
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.14 E-value=0.85 Score=46.08 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=44.7
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.+.+..+ +...-...|.++++|+.++|..+ ++-.-...|.+|.+|+.++|..| ++-.-..+|.++.+|+.++|..
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 445555432 44333445667777777777543 44222356667777777777655 4422234667777777777654
Q ss_pred C
Q 009603 502 N 502 (531)
Q Consensus 502 N 502 (531)
+
T Consensus 376 ~ 376 (394)
T 4fs7_A 376 R 376 (394)
T ss_dssp G
T ss_pred C
Confidence 4
No 164
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=86.96 E-value=13 Score=31.83 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=56.6
Q ss_pred CCcceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeeEEEeecCCCCCcc---ceEEEEEEEecCCeEEEEEe
Q 009603 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD---RAFAEALVFLRDGTVSICFH 158 (531)
Q Consensus 82 g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w~~v~~~~~~~~~---~~~~E~~~~~~~~~l~v~f~ 158 (531)
|..-.|++.+.+.|.|.|++.+.-+. ......+|++||..-.++. |..... .-...+.+..+.+.=.|.|.
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~----~~~r~~~l~VNG~~~~~v~--~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 111 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGG----TSARRATVVVNDSQIKTLD--FPTNSNWTQWQTVNVDIPLKAGTNSIKLV 111 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEC--CCCCSCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCC----CCCeEEEEEECCeEeeEEE--ecCCCCCCeeEEEEEEEEECCCceEEEEE
Confidence 44568888887889999999987432 2356799999996543443 322211 11222233446666666666
Q ss_pred ec-CCCCCcEEeEEEEEcCC
Q 009603 159 ST-GHGDPAILSLEILQVDD 177 (531)
Q Consensus 159 ~~-~~~~pfIsaiEl~~l~~ 177 (531)
.. +.+.|-|..|+|.+.+.
T Consensus 112 ~~~~~g~~niD~i~v~~~~~ 131 (145)
T 2w3j_A 112 AETADGLANIDSIRVTGNGI 131 (145)
T ss_dssp ECSTTCCCEEEEEEECSTTE
T ss_pred EecCcCCEEEEEEEEEcCCC
Confidence 53 34668899999876553
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=86.62 E-value=0.75 Score=46.51 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=62.9
Q ss_pred ccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhcc
Q 009603 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL 517 (531)
Q Consensus 438 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~ 517 (531)
..+..+.+|+.+.+..+ +...-...|..|.+|+.++|..+ ++-.-..+|.++.+|+.+.|..| ++ .|+...+.-+.
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~ 366 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCI 366 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCC
Confidence 35778899999998765 55333467889999999999754 65233457889999999999877 65 67777666677
Q ss_pred ccceeeec
Q 009603 518 HRASFKYV 525 (531)
Q Consensus 518 ~l~~l~l~ 525 (531)
+|+.+++.
T Consensus 367 ~L~~i~lp 374 (394)
T 4fs7_A 367 NLKKVELP 374 (394)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEC
Confidence 78877764
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.34 E-value=1.4 Score=44.38 Aligned_cols=83 Identities=16% Similarity=0.258 Sum_probs=39.7
Q ss_pred cccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccCCCCCCCCChhhhhhccc
Q 009603 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518 (531)
Q Consensus 439 ~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~~~~~~~~ 518 (531)
.+.+++.|+.+.+. +.+...-...|..|.+|+.++|..+ ++-.-..+|.++.+|+.+.|..+ ++ .|+...+..+.+
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~ 358 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTA 358 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTT
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCC
Confidence 44555556655554 2333222234555566666655533 33112234555556666655433 33 455444444455
Q ss_pred cceeeec
Q 009603 519 RASFKYV 525 (531)
Q Consensus 519 l~~l~l~ 525 (531)
|+.+.+.
T Consensus 359 L~~i~~~ 365 (394)
T 4gt6_A 359 LNNIEYS 365 (394)
T ss_dssp CCEEEES
T ss_pred CCEEEEC
Confidence 5555443
No 167
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=83.64 E-value=4.3 Score=33.78 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=32.2
Q ss_pred CeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeec
Q 009603 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAF 313 (531)
Q Consensus 269 ~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~ 313 (531)
.++|+..++..|.|.+.++++.-. ...|.++|+|||..+.
T Consensus 40 ~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~~ 79 (127)
T 2vzp_A 40 SVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSISA 79 (127)
T ss_dssp EEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEEE
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEee
Confidence 488998888889999999998621 2468899999998753
No 168
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=82.10 E-value=5 Score=34.27 Aligned_cols=85 Identities=16% Similarity=0.372 Sum_probs=49.1
Q ss_pred CeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeccCCceeeecCC--ceeeEEEEEEeeecCceEEEEE
Q 009603 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGD--RYTALVLNTTVAVNGRTLTVTL 346 (531)
Q Consensus 269 ~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~--~~~~~~~~~~v~~~~~~l~i~~ 346 (531)
.++|+..++..|.|.|.+.++.- ....|.++|+|||..+...+.+.. ++. ..... ...+....|.-+|.|
T Consensus 41 ~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~~~~~v~~p~-Tg~w~~w~~~--~~~v~L~aG~ntI~l 112 (144)
T 2w47_A 41 YIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNIVKPSMDFVS-TGAWTTWNEA--GIVANLNQGNNVIRA 112 (144)
T ss_dssp EEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEECCCC-CSSTTCCEEE--EEEEEECSEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeEeeeEEEecC-CCCCCeeEEE--EEEEEECCCccEEEE
Confidence 48899888878999999999852 124689999999986433333222 221 11212 223455555544444
Q ss_pred c--cCCCchhhhhhHhhh
Q 009603 347 H--PKGGSHAIINAIEVF 362 (531)
Q Consensus 347 ~--p~~~~~p~lnalei~ 362 (531)
. ...+ .+-|..|++.
T Consensus 113 ~~~~~~g-~~niD~i~v~ 129 (144)
T 2w47_A 113 TAIASDG-GPNVDYLKVF 129 (144)
T ss_dssp EECSTTC-CCEEEEEEEE
T ss_pred EEeCCCC-CEEEeEEEEE
Confidence 4 2222 2455555554
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.93 E-value=2.7 Score=41.84 Aligned_cols=99 Identities=9% Similarity=0.093 Sum_probs=72.0
Q ss_pred EEEEEccCCCCcccCcccccCCCCCCEEEccCCccCccCCccccCCCCCCEEecCCCcCCCCCcccccCCCCCCEEeccC
Q 009603 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (531)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (531)
++.+.+..+ +...-...+.++..|+.+.+..+ +...-...|..|.+|+.+.+..+.++-.-...|.++.+|+.+.|..
T Consensus 242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 566777654 44444556788899999998654 5433345788999999999999888843446789999999999976
Q ss_pred CCCCCCCChhhhhhccccceeee
Q 009603 502 NTLSGRVPAALGGRLLHRASFKY 524 (531)
Q Consensus 502 N~l~g~iP~~~~~~~~~l~~l~l 524 (531)
+ ++ .|+...+..+.+|+.+.+
T Consensus 320 ~-l~-~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 320 A-LK-TIQVYAFKNCKALSTISY 340 (379)
T ss_dssp T-CC-EECTTTTTTCTTCCCCCC
T ss_pred c-cc-EEHHHHhhCCCCCCEEEE
Confidence 5 55 677766666667776655
No 170
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=81.10 E-value=18 Score=31.27 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=55.3
Q ss_pred ceEE-eeecCCceeEEEEEEecccCC-----CCC-CCCcEEEEEcCeeEEEeecCCCCC---ccceEEEEEEEecCCeEE
Q 009603 85 NCYI-INRVPKGHYNVRIFFGLVTLT-----SFD-HEPLFDISVEGTQIYSLKSGWSDH---DDRAFAEALVFLRDGTVS 154 (531)
Q Consensus 85 ~cY~-~~~~~~g~ylvRl~F~~~~y~-----~~~-~~~~F~v~~~~~~w~~v~~~~~~~---~~~~~~E~~~~~~~~~l~ 154 (531)
-.++ +.+.+.|+|.|++.|.-+... +.+ ..+..+|++||..-.++. |... +..-...+.+..+.+.=.
T Consensus 49 vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~--fp~Tg~W~~~~~~tv~V~L~aG~Nt 126 (156)
T 2wz8_A 49 LQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHY--FFNTRGWNTYRTDIIDVYLNAGNNT 126 (156)
T ss_dssp EEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEE--ECCCSSTTCCEEEEEEEEECSEEEE
T ss_pred EEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEE--eCCCCCCCcceEEEEEEEECCCceE
Confidence 3555 666678999999999766321 111 356799999986422332 3221 122233334456777888
Q ss_pred EEEeec--CCCCCcEEeEEEEEcC
Q 009603 155 ICFHST--GHGDPAILSLEILQVD 176 (531)
Q Consensus 155 v~f~~~--~~~~pfIsaiEl~~l~ 176 (531)
|.|... ....|-|-.|+|.+..
T Consensus 127 I~~~~~~~~~~~pdiD~i~v~~~~ 150 (156)
T 2wz8_A 127 IRFYNGTSGSYAPNIDKIAIAALE 150 (156)
T ss_dssp EEEECCSTTCBCCEEEEEEEEC--
T ss_pred EEEEecCCCCCCcEEEEEEEeccc
Confidence 888876 3456889999987654
No 171
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=80.16 E-value=3.2 Score=35.68 Aligned_cols=39 Identities=13% Similarity=0.376 Sum_probs=31.6
Q ss_pred CeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeee
Q 009603 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIA 312 (531)
Q Consensus 269 ~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~ 312 (531)
.++|+..++..|.|.+.+.++.- ..+.|.++|+|||..+
T Consensus 40 ~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~ 78 (145)
T 2w3j_A 40 SIVWSLSAASAKTYTAQIRFGNG-----GTSARRATVVVNDSQI 78 (145)
T ss_dssp EEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTEEE
T ss_pred EEEEEEECCCCeEEEEEEEEECC-----CCCCeEEEEEECCeEe
Confidence 48899888888999999999842 1246999999999865
No 172
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=79.10 E-value=28 Score=29.38 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=57.3
Q ss_pred CCcceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeeE-EEeecCCCCCc---cceEEEEEEEecCCeEEEEE
Q 009603 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI-YSLKSGWSDHD---DRAFAEALVFLRDGTVSICF 157 (531)
Q Consensus 82 g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w-~~v~~~~~~~~---~~~~~E~~~~~~~~~l~v~f 157 (531)
|..-.|++.+.+.|.|.|++.+.-+. .....++|++||... .++. |.... .......-+..+.+.=.|+|
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~----~~~~~~~l~VNG~~~~~~v~--~p~Tg~w~~w~~~~~~v~L~aG~ntI~l 112 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGT----TANRPMRITVNGNIVKPSMD--FVSTGAWTTWNEAGIVANLNQGNNVIRA 112 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEEC--CCCCSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCC----CCCeEEEEEECCeEeeeEEE--ecCCCCCCeeEEEEEEEEECCCccEEEE
Confidence 45568888888889999999988542 235679999999642 2332 32221 11122223445666666666
Q ss_pred eec-CCCCCcEEeEEEEEcCC
Q 009603 158 HST-GHGDPAILSLEILQVDD 177 (531)
Q Consensus 158 ~~~-~~~~pfIsaiEl~~l~~ 177 (531)
... ..+.|.|..|+|.+.+.
T Consensus 113 ~~~~~~g~~niD~i~v~~~~~ 133 (144)
T 2w47_A 113 TAIASDGGPNVDYLKVFSANA 133 (144)
T ss_dssp EECSTTCCCEEEEEEEEECTT
T ss_pred EEeCCCCCEEEeEEEEEeCCC
Confidence 543 34568999999987654
No 173
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=75.87 E-value=35 Score=28.72 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCcceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeeE--EEeecCCCCCc---cceEEEEEEEecCCeEEEE
Q 009603 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI--YSLKSGWSDHD---DRAFAEALVFLRDGTVSIC 156 (531)
Q Consensus 82 g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w--~~v~~~~~~~~---~~~~~E~~~~~~~~~l~v~ 156 (531)
|..-.|++.+.+.|.|.|++.+.-+. ......+|++||..- .+|. |.... ..-..+..+..+.+.=.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~----~~~r~~~l~VNG~~~g~~~v~--~p~Tg~W~~w~t~~~~v~L~aG~ntI~ 111 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGG----TANRNGSLVINGGSNGNYTVS--LPTTGAWTTWQTATIDVDLVQGNNIVQ 111 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS----SSCCCEEEEETTTTTCEEEEC--CCCCSSTTCCEEEEEEEEECSEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCC----CCCceEEEEECCEEcceeEEE--ecCCCCCCccEEEEEEEEECCCceEEE
Confidence 44557888777789999999987542 224679999998643 3443 32211 1122233334566666666
Q ss_pred EeecC-CCCCcEEeEEEEE
Q 009603 157 FHSTG-HGDPAILSLEILQ 174 (531)
Q Consensus 157 f~~~~-~~~pfIsaiEl~~ 174 (531)
|.... .+.|-|..|+|.+
T Consensus 112 l~~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 112 LSATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp EEESSTTCCCEEEEEEEES
T ss_pred EEEcCCCCCEEEEEEEEec
Confidence 65543 4678899999875
No 174
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=73.58 E-value=36 Score=27.88 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=52.7
Q ss_pred CCCcceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeeEEE-eecCCCCCc---cceEEEEEEEecCCeEEEE
Q 009603 81 EGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYS-LKSGWSDHD---DRAFAEALVFLRDGTVSIC 156 (531)
Q Consensus 81 ~g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w~~-v~~~~~~~~---~~~~~E~~~~~~~~~l~v~ 156 (531)
.|..-.|++.+.+.|.|.|++.+..+. .....++|++||..... + .|.... ........+..+.+.=.|.
T Consensus 37 ~g~~v~~~V~v~~aG~Y~l~~rya~~~----~~~~~~~l~VnG~~~~~~v--~~p~tg~W~~w~~~~~~v~L~aG~ntI~ 110 (127)
T 2vzp_A 37 AGSSVEWTVTVPSAGTYDVVVRYANGT----TTSRPLDFSVNGSISASGV--AFGSTGTWPAWTTKTVRVTLAAGVNKIK 110 (127)
T ss_dssp TTCEEEEEEEESSSEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEE--CCCCCSSTTCCEEEEEEEEECSEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEEEEEcCC----CCCeEEEEEECCEEeeeEE--EecCCCCCCceEEEEEEEEECCCceEEE
Confidence 355668998888889999999998653 23567999999964322 3 232211 1111223344566666666
Q ss_pred Eeec-CCCCCcEEeEEE
Q 009603 157 FHST-GHGDPAILSLEI 172 (531)
Q Consensus 157 f~~~-~~~~pfIsaiEl 172 (531)
|... +.+.|-|..|+|
T Consensus 111 l~~~~~~~~~niD~i~v 127 (127)
T 2vzp_A 111 AVATTANGGPNVDKITL 127 (127)
T ss_dssp EEECSTTCCCEEEEEEC
T ss_pred EEEeCCCCCeEEEEEEC
Confidence 6543 345677877764
No 175
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=70.91 E-value=10 Score=32.08 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeee
Q 009603 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIA 312 (531)
Q Consensus 269 ~l~~~~~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~ 312 (531)
.++|...++..|.|.+.+.++.- ....|..+|+|||..+
T Consensus 40 ~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~ 78 (139)
T 2w87_A 40 AVVWAIDATSSGRRTLTIRYANG-----GTANRNGSLVINGGSN 78 (139)
T ss_dssp EEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTTTT
T ss_pred EEEEEEECCCCcEEEEEEEEECC-----CCCCceEEEEECCEEc
Confidence 48898888778999999999852 1236889999999754
No 176
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=67.09 E-value=39 Score=33.62 Aligned_cols=78 Identities=21% Similarity=0.352 Sum_probs=52.8
Q ss_pred EEeee-cCCceeEEEEEEecccCCCCCCCCcEEEEEcCeeEEEeecCCCCCccceEEEEEEEecCCeEEEEEeecCCC-C
Q 009603 87 YIINR-VPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHG-D 164 (531)
Q Consensus 87 Y~~~~-~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w~~v~~~~~~~~~~~~~E~~~~~~~~~l~v~f~~~~~~-~ 164 (531)
++|.+ .++|.|.|.+.+--+ +.=.|...+. ..+. +.......+++.+.+.++.+.+.+.....+ .
T Consensus 78 ~~f~v~~~~g~Y~v~v~~g~~--------~~~~v~~e~~--~~~~---~~~g~~~~~~~~v~~~~g~~~l~~~~~~~g~~ 144 (375)
T 2o14_A 78 NTFNVDLPNGLYEVKVTLGNT--------ARASVAAEGV--FQVI---NMTGDGAEDTFQIPVTDGQLNLLVTEGKAGTA 144 (375)
T ss_dssp CCEEEECCSEEEEEEEEESSC--------SEEEEEETTE--EEEE---EEESTTCEEEEEEEECSSEEEEEEEESSTTSC
T ss_pred eEEEEEcCCCceEEEEEecCC--------cceEEEEcce--EEEE---ecCCCcEEEEEEEEeeCCeEEEeeeeccCCCC
Confidence 34444 458999999998754 2344555653 3333 233455667788888999999997644333 5
Q ss_pred CcEEeEEEEEcCC
Q 009603 165 PAILSLEILQVDD 177 (531)
Q Consensus 165 pfIsaiEl~~l~~ 177 (531)
+++++||+.+.+.
T Consensus 145 ~~l~~i~v~~~~~ 157 (375)
T 2o14_A 145 FTLSALKIKKLSD 157 (375)
T ss_dssp CEEEEEEEEEEES
T ss_pred cccceEEEeccCC
Confidence 7899999998764
No 177
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=60.92 E-value=17 Score=31.50 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=31.9
Q ss_pred CeEEE-EecCCCCcEEEEEEeeeccCC-----CCCCceEEEEEEECCee
Q 009603 269 DLQYT-MDVDPNRNYSIWLHFAEIDNT-----ITGVGQRVFDILINGDI 311 (531)
Q Consensus 269 ~l~~~-~~v~~~~~y~v~LhFaei~~~-----~~~~~~R~F~V~ing~~ 311 (531)
.++|. ..++..|.|.|.+.|+.-... ......|...|+|||..
T Consensus 48 ~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~ 96 (156)
T 2wz8_A 48 YLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGP 96 (156)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCC
T ss_pred EEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCce
Confidence 48898 888778999999999864210 00124799999999975
No 178
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Probab=54.53 E-value=98 Score=26.13 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=57.0
Q ss_pred CCcceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeeEEEeecCCCCCccceEEEEEEEecCCeEEEEEeec-
Q 009603 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHST- 160 (531)
Q Consensus 82 g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w~~v~~~~~~~~~~~~~E~~~~~~~~~l~v~f~~~- 160 (531)
+.+-.+++.+.+.|.|-+.+.+.. .|. ...=.|.+||. -..|. |......+-+-.++..+.|+=.|.|...
T Consensus 35 gdsVtf~VdVP~tG~YdLsI~Ya~-~~G----~k~n~L~VNG~-~~~V~--fP~tt~~~~~~~~V~L~aG~NtI~i~~~~ 106 (140)
T 2bgo_A 35 GSAVIWNVDVPVTGEYRINLTWSS-PYS----SKVNTLVMDGT-ALSYA--FAEATVPVTYVQTKTLSAGNHSFGVRVGS 106 (140)
T ss_dssp TCEEEEEECCCSSEEEEEEEEECC-CSS----EEEEEEEETTE-EEEEE--EESCCSCEEEEEEEEECSSCEEEEEECCS
T ss_pred CCEEEEEEecCCCcEEEEEEEecc-CCC----CceEEEEECCc-eeEEE--ECCcCCcEEEEEEEEecCCccEEEEEecC
Confidence 445577777778899999887632 233 23458899986 45553 3333332221123566888888888763
Q ss_pred -CCCCCcEEeEEEEEcCCCc
Q 009603 161 -GHGDPAILSLEILQVDDKA 179 (531)
Q Consensus 161 -~~~~pfIsaiEl~~l~~~~ 179 (531)
.-|.-+|-+|+|.+.....
T Consensus 107 g~WG~~~iD~I~l~~a~~~~ 126 (140)
T 2bgo_A 107 SDWGYMNVHSLKLELLGGLT 126 (140)
T ss_dssp SSCCCCEEEEEEEEECC---
T ss_pred CCceeEEEEEEEEEcCCCcc
Confidence 3578899999999887643
No 179
>2y7l_A NT_ALS9-2, agglutinin-like ALS9 protein; cell adhesion, adhesin, peptide binding protein; 1.49A {Candida albicans} PDB: 2y7m_A 2y7n_A 2y7o_A 2ylh_A
Probab=26.99 E-value=79 Score=30.49 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=67.3
Q ss_pred cceeeccCCCCCCcceEEeeecCCceeE-EEEEEecccCCCCCCCCcEEEEEcCeeEEEeecCCCCCccceEEEEEEEec
Q 009603 71 LKTLRYFPLSEGPENCYIINRVPKGHYN-VRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLR 149 (531)
Q Consensus 71 y~t~R~F~~~~g~~~cY~~~~~~~g~yl-vRl~F~~~~y~~~~~~~~F~v~~~~~~w~~v~~~~~~~~~~~~~E~~~~~~ 149 (531)
....|++|.- ++--.|-+...=+.-|. =.+.|-..+....+- ..++|.+ ..-+++|.-...+--..+-+.-.
T Consensus 168 i~~~R~~psl-~~~~~~~l~~~CpnGy~SG~ig~~~~~~~~iDC-S~v~v~i-----tn~~NdW~~P~~~~sfs~t~tCs 240 (312)
T 2y7l_A 168 ITSSRIIPSL-NKLSSLFVVPQCENGYTSGIMGFVASNGATIDC-SNVNIGI-----SKGLNDWNFPVSSESFSYTKTCT 240 (312)
T ss_dssp EEEEEEEGGG-TEEEEEEECCCCTTCEEEEEEEEEECTTEEEEE-EEEEEEE-----EESBCTTSCBSCCBCCCEEEEEC
T ss_pred eEEeeecCCc-ccEEEEEEcCCCCCCcEeeeEeEEcCCCccccc-cchhhhh-----hcccccccCcccccCcccccEEc
Confidence 4778888852 22235555332223332 334333211000111 1244433 33344555433333334455678
Q ss_pred CCeEEEEEeecCCCC-CcEEeEEEEEcCCCccccCCCCccceeEEEEeeecCCCCCCCCcCCCCCCCCCCCCcccCCC
Q 009603 150 DGTVSICFHSTGHGD-PAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPIL 226 (531)
Q Consensus 150 ~~~l~v~f~~~~~~~-pfIsaiEl~~l~~~~y~~~~~~~~~~~l~~~~Rin~G~~~~~~~~~~~~d~~~~DR~W~~~~ 226 (531)
++.+.|+|.+.+.|. |||++++..|... ...+....+.-|.+... . +++. .+.|.++.
T Consensus 241 s~~i~It~~niPaGYRpfvdal~~~~~~~-----------~~~~~y~~~YtC~~~~~---~---~~~~--~~~w~~y~ 299 (312)
T 2y7l_A 241 STSITVEFQNVPAGYRPFVDAYISAENID-----------KYTLTYANEYTCENGNT---V---VDPF--TLTWWGYK 299 (312)
T ss_dssp SSEEEEEECCBCTTEEEEEEEEEEESSTT-----------EEEEEECCEEEETTSCE---E---ECCE--EEEEECCC
T ss_pred CCEEEEEEccCCCCceEEEEEEEecCCCc-----------eEEEEEEEEEEECCCce---e---ecce--eEEecccc
Confidence 999999998888876 9999998664422 12233344455766432 2 3343 67888765
No 180
>4d8m_A Pesticidal crystal protein CRY5BA; glycolipid binding, lipid binding protein; 2.30A {Bacillus thuringiensis}
Probab=23.90 E-value=2.5e+02 Score=29.62 Aligned_cols=83 Identities=14% Similarity=0.273 Sum_probs=50.8
Q ss_pred eEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeeE-EEeecCCCC-----------CccceEEEEE-EEecCCe
Q 009603 86 CYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI-YSLKSGWSD-----------HDDRAFAEAL-VFLRDGT 152 (531)
Q Consensus 86 cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~w-~~v~~~~~~-----------~~~~~~~E~~-~~~~~~~ 152 (531)
-|.+.-...++|-||...+... +..-.|.|..||+.. ... +|.. .+.+++++.- +..+.++
T Consensus 489 ~~~i~n~~~~~Y~VR~RYAS~~----d~~~~~~~~~~~~~i~n~~--~fp~T~~~~~~v~G~nG~y~~~~~~~~~~p~g~ 562 (587)
T 4d8m_A 489 GIQITNQTKQKYEIRCRYASKG----DNNVYFNVDLSENPFRNSI--SFGSTESSVVGVQGENGKYILKSITTVEIPAGS 562 (587)
T ss_dssp EEEEEECSCEEEEEEEEEEESS----CEEEEEEECCSSSCEEEEE--EECCCTTCSSSEECSSSEEEEEEEEEEEECSEE
T ss_pred EEEEEccccceEEEEEEEecCC----CceEEEEEcCCCceeeccC--CCCccccccccccccCCceEeecCCceEecCCc
Confidence 4555445568999999998531 233357777777432 111 1221 1233444411 2247788
Q ss_pred EEEEEeecCCCCCcEEeEEEEE
Q 009603 153 VSICFHSTGHGDPAILSLEILQ 174 (531)
Q Consensus 153 l~v~f~~~~~~~pfIsaiEl~~ 174 (531)
+.|.+.+.+.+-=||--||.+|
T Consensus 563 ~t~~i~nn~~~~~~iDRIEFiP 584 (587)
T 4d8m_A 563 FYVHITNQGSSDLFLDRIEFVP 584 (587)
T ss_dssp EEEEEEECSSSCEEEEEEEEEE
T ss_pred EEEEEEecCCCCEEEEEEEeee
Confidence 8888888666667899999998
Done!