BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009604
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/422 (82%), Positives = 381/422 (90%), Gaps = 15/422 (3%)
Query: 124 DDIALVDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVN 179
+D+ALV+ +NVQ ++L +K ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVN
Sbjct: 25 EDVALVENETCNDQNVQFDSLPSMKY-ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVN 83
Query: 180 TSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIMASGMSAST 229
TSAYFF KT+ELIDFKEKRRASFEYGRYGNPTTV GAEST++MASGM AST
Sbjct: 84 TSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCAST 143
Query: 230 VMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSL 289
VMLLALVPAGGHIVTTTDCYRKTRIFIET+LPKMGITATVIDPAD+ LE ALN V+L
Sbjct: 144 VMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNL 203
Query: 290 FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFI 349
FFTESPTNPFLRCVD++LVS LCH+KGA+VCIDGTFATPLNQKAL+LGADLVLHSATKF+
Sbjct: 204 FFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFL 263
Query: 350 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 409
GGHNDVLAG ISG KLV++IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR
Sbjct: 264 GGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 323
Query: 410 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP 469
MA+ILEAHPKV+ V+YPGL+SHPEHHIA +QMTGFGG VSFEVDGDL T KF+DALKIP
Sbjct: 324 MAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIP 383
Query: 470 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529
YIAPSFGGCESIVDQPAIMSYWDLSQS+R KYGIMDNLVRFSFGVEDF+DLKAD+LQAL
Sbjct: 384 YIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALD 443
Query: 530 AI 531
+I
Sbjct: 444 SI 445
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 273 bits (697), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 225/383 (58%), Gaps = 15/383 (3%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVG--- 214
+HAG++ T A++TP+ TS + F + + + Y R GNPTT
Sbjct: 14 VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 215 -------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 267
E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 72 KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPKFGINV 131
Query: 268 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 327
+ +D A E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 328 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 385
P Q+ L LGAD+V+HS TK+I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 191 PYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGXMSPFN 250
Query: 386 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 445
A+L +RG+KTL +R+++ AL++A+ LE HP + RV+YPGL SHP++ + +QM+ G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 446 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505
G++SFE+ G L A + I+++++ +A S G E+++ PA M++ ++ ERLK GI D
Sbjct: 311 GIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 506 NLVRFSFGVEDFEDLKADVLQAL 528
L+R S G+ED ED+ D+ A+
Sbjct: 371 GLIRLSVGLEDPEDIINDLEHAI 393
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 224/383 (58%), Gaps = 15/383 (3%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVG--- 214
+HAG++ T A++TP+ TS + F + + + Y R GNPTT
Sbjct: 14 VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 215 -------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 267
E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 72 KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 268 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 327
+ +D A E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 328 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 385
P Q+ L LGAD+V+HS T +I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 386 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 445
A+L +RG+KTL +R+++ AL++A+ LE HP + RV+YPGL SHP++ + +QM+ G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 446 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505
G++SFE+ G L A + I+++++ +A S G E+++ PA M++ ++ ERLK GI D
Sbjct: 311 GIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 506 NLVRFSFGVEDFEDLKADVLQAL 528
L+R S G+ED ED+ D+ A+
Sbjct: 371 GLIRLSVGLEDPEDIINDLEHAI 393
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 224/383 (58%), Gaps = 15/383 (3%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVG--- 214
+HAG++ T A++TP+ TS + F + + + Y R GNPTT
Sbjct: 14 VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 215 -------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 267
E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 72 KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 268 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 327
+ +D A E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 328 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 385
P Q+ L LGAD+V+HS T +I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 386 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 445
A+L +RG+KTL +R+++ AL++A+ LE HP + RV+YPGL SHP++ + +QM+ G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 446 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505
G++SFE+ G L A + I+++++ +A S G E+++ PA M++ ++ ERLK GI D
Sbjct: 311 GIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 506 NLVRFSFGVEDFEDLKADVLQAL 528
L+R S G+ED ED+ D+ A+
Sbjct: 371 GLIRLSVGLEDPEDIINDLEHAI 393
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 268 bits (684), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 223/383 (58%), Gaps = 15/383 (3%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVG--- 214
+HAG++ T A++TP+ TS + F + + + Y R GNPTT
Sbjct: 14 VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 215 -------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 267
E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 72 KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 268 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 327
+D A E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF +
Sbjct: 132 RFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 328 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 385
P Q+ L LGAD+V+HS T +I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 386 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 445
A+L +RG+KTL +R+++ AL++A+ LE HP + RV+YPGL SHP++ + +QM+ G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 446 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505
G++SFE+ G L A + I+++++ +A S G E+++ PA M++ ++ ERLK GI D
Sbjct: 311 GIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 506 NLVRFSFGVEDFEDLKADVLQAL 528
L+R S G+ED ED+ D+ A+
Sbjct: 371 GLIRLSVGLEDPEDIINDLEHAI 393
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 222/383 (57%), Gaps = 15/383 (3%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVG--- 214
+HAG++ T A++TP+ TS + F + + + Y R GNPTT
Sbjct: 14 VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 215 -------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 267
E+ + ASG+SA T LL L G HIV+ + Y T F+ +PK GI
Sbjct: 72 KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 268 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 327
+D E + AA+ + + E+P NP L VD++ V+ + H++GA++ +D TF +
Sbjct: 132 RFVDAGKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 328 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 385
P Q+ L LGAD+V+HS T +I GH DV+ G I G + + Q R L + GG ++P
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 386 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 445
A+L +RG+KTL +R+++ AL++A+ LE HP + RV+YPGL SHP++ + +QM+ G
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 310
Query: 446 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505
G++SFE+ G L A + I+++++ +A S G E+++ PA M++ ++ ERLK GI D
Sbjct: 311 GIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD 370
Query: 506 NLVRFSFGVEDFEDLKADVLQAL 528
L+R S G+ED ED+ D+ A+
Sbjct: 371 GLIRLSVGLEDPEDIINDLEHAI 393
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/388 (37%), Positives = 219/388 (56%), Gaps = 27/388 (6%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVG 214
+LAIH G+ T A+ P+ TS Y E FEY R NPT
Sbjct: 22 TLAIHGGQSPDPS--TGAVMPPIYATSTYAQSSPGE--------HQGFEYSRTHNPTRFA 71
Query: 215 AESTVI----------MASGMSA-STVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPK 262
E V ASGM+A STVM L+ AG H+V D Y T R+F
Sbjct: 72 YERCVAALEGGTRAFAFASGMAATSTVM--ELLDAGSHVVAMDDLYGGTFRLFERVRRRT 129
Query: 263 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 322
G+ + +D D +AA+ + + + E+PTNP L+ VD+ ++ + K G + +D
Sbjct: 130 AGLDFSFVDLTDPAAFKAAIRADT-KMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD 188
Query: 323 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG--SISGSGKLVTQIRNLHHVLGGA 380
TFA+P+ Q+ LSLGADLV+HSATK++ GH+D++ G + + +L Q+ L + +GG
Sbjct: 189 NTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGV 248
Query: 381 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQ 440
P ++L +RG+KTL LR++ AL +A+ LE HP +++V YPGL SHP+H +A +Q
Sbjct: 249 QGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQ 308
Query: 441 MTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK 500
M+GFGG+VS + G A +F + ++ +A S GG ES+V+ PA+M++ + + R +
Sbjct: 309 MSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQ 368
Query: 501 YGIMDNLVRFSFGVEDFEDLKADVLQAL 528
GI D LVR S G+ED DL+ D+ +AL
Sbjct: 369 LGISDALVRLSVGIEDLGDLRGDLERAL 396
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 209/371 (56%), Gaps = 13/371 (3%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT----------VGAESTVIM 221
A+ PV T+ + F +A Y R NPT G E+ + +
Sbjct: 27 ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 281
ASGM A T L L+ G ++ Y T F+ + + G+ +D AD++ LEAA
Sbjct: 87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 282 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 341
+ ++F ESP NP + D+ V+ + K GA V +D T+ TP Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 342 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 399
+HSATK++ GH D+ AG + GS LV +IR L + G L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 400 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 459
+ + + A +A+ L P+V+ +HYPGL S P++ +A QQM+ GG+++FE+ G + A
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG 325
Query: 460 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 519
+F++AL++ A S G ES+ PA M++ + ER YGI + LVR S G+ED +D
Sbjct: 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDD 385
Query: 520 LKADVLQALHA 530
L ADV QAL A
Sbjct: 386 LLADVQQALKA 396
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 241 bits (616), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/371 (37%), Positives = 208/371 (56%), Gaps = 13/371 (3%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT----------VGAESTVIM 221
A+ PV T+ + F +A Y R NPT G E+ + +
Sbjct: 27 ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 281
ASGM A T L L+ G ++ Y T F+ + + G+ +D AD++ LEAA
Sbjct: 87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 282 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 341
+ ++F ESP NP + D+ V+ + K GA V +D T+ TP Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 342 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 399
+HSAT ++ GH D+ AG + GS LV +IR L + G L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 400 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 459
+ + + A +A+ L P+V+ +HYPGL S P++ +A QQM+ GG+++FE+ G + A
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG 325
Query: 460 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 519
+F++AL++ A S G ES+ PA M++ + ER YGI + LVR S G+ED +D
Sbjct: 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDD 385
Query: 520 LKADVLQALHA 530
L ADV QAL A
Sbjct: 386 LLADVQQALKA 396
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 241 bits (614), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 139/371 (37%), Positives = 208/371 (56%), Gaps = 13/371 (3%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT----------VGAESTVIM 221
A+ PV T+ + F +A Y R NPT G E+ + +
Sbjct: 27 ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 281
ASGM A T L L+ G ++ Y T F+ + + G+ +D AD++ LEAA
Sbjct: 87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 282 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 341
+ ++F ESP NP + D+ V+ + K GA V +D T+ TP Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 342 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 399
+HSAT ++ GH D+ AG + GS LV +IR L + G L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 400 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 459
+ + + A +A+ L P+V+ +HYPGL S P++ +A QQM+ GG+++FE+ G + A
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG 325
Query: 460 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 519
+F++AL++ A S G ES+ PA M++ + ER YGI + LVR S G+ED +D
Sbjct: 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDD 385
Query: 520 LKADVLQALHA 530
L ADV QAL A
Sbjct: 386 LLADVQQALKA 396
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/369 (33%), Positives = 205/369 (55%), Gaps = 14/369 (3%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVG----------AESTVIMASGM 225
P+ TS + F + + + + + Y R GNPT E+ V +SGM
Sbjct: 28 PIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGM 87
Query: 226 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 285
A +L ++ AG H+++ Y T E L K GI I+ A ++ + N
Sbjct: 88 GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN 147
Query: 286 NVSLFFTESPTNPFLRCVDVKLVSDLCH-KKGAIVCIDGTFATPLNQKALSLGADLVLHS 344
++F E+P NP L+ +D++ V H ++G +V D TF +P+ + G D+V+HS
Sbjct: 148 TKIVYF-ETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHS 206
Query: 345 ATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQ 402
ATK+I GH DV+AG I G L+ QIR + + G ++P+ A+LI RG+ TL++R++
Sbjct: 207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKA 266
Query: 403 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKF 462
++ A+++A+ L++HP V++V+YPG + H H IA +QM +G +++F + K
Sbjct: 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKL 326
Query: 463 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKA 522
+D LK+ +A S GGCES++ PA M++ + + ER GI D ++R S G+ED ++L A
Sbjct: 327 LDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIA 386
Query: 523 DVLQALHAI 531
D Q L A+
Sbjct: 387 DFKQGLDAL 395
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 197/364 (54%), Gaps = 13/364 (3%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIMASGM 225
P+ TS + F T + D + Y R GNPT GA + SGM
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 226 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 285
A + LA + G H++ Y T LP+ GI +ID +D+E ++AA N
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 345
+ + ESP NP + D+K ++ +CH++GA + +D TF +P K L LGAD+ LHS
Sbjct: 145 T-KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 346 TKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 404
+K+I GH DV+ G S + + + + I+ G + P A+L RGMKTL +R+Q
Sbjct: 204 SKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 405 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID 464
L++AK LE H K+ +V++PGL+S P H IA +QMTG+G FE+ A K ++
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-SFEAAKKLME 322
Query: 465 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 524
LK+ +A S G +++++ PA M++ + ++ K GI LVR S G+E+ +D+ AD+
Sbjct: 323 HLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADL 382
Query: 525 LQAL 528
QAL
Sbjct: 383 KQAL 386
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/364 (34%), Positives = 196/364 (53%), Gaps = 13/364 (3%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIMASGM 225
P+ TS + F T + D + Y R GNPT GA + SGM
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 226 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 285
A + LA + G H++ Y T LP+ GI +ID +D+E ++AA N
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 345
+ + ESP NP + D+K ++ +CH++GA + +D TF +P K L LGAD+ LHS
Sbjct: 145 T-KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 346 TKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 404
+ +I GH DV+ G S + + + + I+ G + P A+L RGMKTL +R+Q
Sbjct: 204 SXYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 405 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID 464
L++AK LE H K+ +V++PGL+S P H IA +QMTG+G FE+ A K ++
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-SFEAAKKLME 322
Query: 465 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 524
LK+ +A S G +++++ PA M++ + ++ K GI LVR S G+E+ +D+ AD+
Sbjct: 323 HLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADL 382
Query: 525 LQAL 528
QAL
Sbjct: 383 KQAL 386
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 202/365 (55%), Gaps = 22/365 (6%)
Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVGAESTV----------I 220
DA++TP+ T+ FK+ + + ++Y R GNPT ES +
Sbjct: 102 DAMSTPLYQTAT--FKQPSAI------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFC 153
Query: 221 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 280
SGM+A + + L+ G IV D Y + + V+P+ G+ ++ ++ + A
Sbjct: 154 FTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAA 212
Query: 281 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 340
A+ L + ESPTNP + D++ +S++ H +GA+V +D + +P+ + L LGAD+
Sbjct: 213 AIGPQ-TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADI 271
Query: 341 VLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 399
V+HSATKFI GH+DV+AG ++ G KL ++ L + G L P +L +RG+KT+ LR
Sbjct: 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALR 331
Query: 400 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 459
+++Q A ++A L +HP+VK+V+Y GL HP HH+ Q G G V SF + G + +
Sbjct: 332 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF-ITGSVALS 390
Query: 460 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 519
++ K IA SFG +S++ P MS+ + R G+ ++LVR S G+ED +D
Sbjct: 391 KHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDD 450
Query: 520 LKADV 524
L +D+
Sbjct: 451 LISDL 455
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 200/383 (52%), Gaps = 24/383 (6%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVGAE 216
AIH+G R T A+ P+ +S + L R +EY R GNPT E
Sbjct: 22 AIHSGYR--PDPATGAVNAPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRTALE 72
Query: 217 STVI----------MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 266
+ + +SGM+A+ L A++ G H+V D Y T I+ V +
Sbjct: 73 AALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132
Query: 267 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 326
T + AD++ + AA+ L + E+PTNP L D+ ++ L A V +D TFA
Sbjct: 133 YTPVALADLDAVRAAIRPTT-RLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFA 191
Query: 327 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNA 385
+P Q+ LSLGAD+VLHS T +IGGH+DV+ G+ ++ +L L + G P
Sbjct: 192 SPALQQPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFD 251
Query: 386 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG 445
AYL +RG+KTL LR+Q+ + A +A+ L HP + V YPGL SHP H +A +QM GFG
Sbjct: 252 AYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFG 311
Query: 446 GVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505
G+VS + TA + I +A S G ES+++ P+ M++ + S+ + D
Sbjct: 312 GMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQ---LEVPD 368
Query: 506 NLVRFSFGVEDFEDLKADVLQAL 528
+LVR S G+ED DL D+ QAL
Sbjct: 369 DLVRLSVGIEDVADLLDDLKQAL 391
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 221/386 (57%), Gaps = 23/386 (5%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV--- 213
AIH G+ + + A+ P+ ++ FK+ A + + FEY R GNPT
Sbjct: 27 AIHVGQDPEQ-WTSRAVVPPISLSTT--FKQGAP------GQHSGFEYSRSGNPTRNCLE 77
Query: 214 -------GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 266
GA+ + ASG++A TV + L+ AG I+ D Y T + V + G+
Sbjct: 78 KAVAALDGAKYCLAFASGLAA-TVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 136
Query: 267 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTF 325
+ +D + ++ LEAA+ L + E+PTNP + +D++ + + HK G I+ +D TF
Sbjct: 137 ISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 195
Query: 326 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPN 384
+P Q+ L+LGAD+ ++SATK++ GH+DV+ G +S L ++R L + LG +P
Sbjct: 196 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPI 255
Query: 385 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 444
YL RG+KTLH+R+++ + +A+ LE++P V++V YPGL SHP+H + +Q TG
Sbjct: 256 DCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGC 315
Query: 445 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 504
G+V+F + G L F+ LK+ +A S GG ES+ + PAIM++ + +++R GI
Sbjct: 316 TGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGIS 375
Query: 505 DNLVRFSFGVEDFEDLKADVLQALHA 530
D L+R S G+ED EDL D+ QAL A
Sbjct: 376 DTLIRLSVGLEDEEDLLEDLDQALKA 401
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 221/386 (57%), Gaps = 23/386 (5%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV--- 213
AIH G+ + + A+ P+ ++ FK+ A + + FEY R GNPT
Sbjct: 23 AIHVGQDPEQW-TSRAVVPPISLSTT--FKQGAP------GQHSGFEYSRSGNPTRNCLE 73
Query: 214 -------GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 266
GA+ + ASG++A TV + L+ AG I+ D Y T + V + G+
Sbjct: 74 KAVAALDGAKYCLAFASGLAA-TVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 132
Query: 267 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTF 325
+ +D + ++ LEAA+ L + E+PTNP + +D++ + + HK G I+ +D TF
Sbjct: 133 ISFVDCSKIKLLEAAITPET-KLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 191
Query: 326 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPN 384
+P Q+ L+LGAD+ ++SATK++ GH+DV+ G +S L ++R L + LG +P
Sbjct: 192 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPI 251
Query: 385 AAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 444
YL RG+KTLH+R+++ + +A+ LE++P V++V YPGL SHP+H + +Q TG
Sbjct: 252 DCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGC 311
Query: 445 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 504
G+V+F + G L F+ LK+ +A S GG ES+ + PAIM++ + +++R GI
Sbjct: 312 TGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGIS 371
Query: 505 DNLVRFSFGVEDFEDLKADVLQALHA 530
D L+R S G+ED EDL D+ QAL A
Sbjct: 372 DTLIRLSVGLEDEEDLLEDLDQALKA 397
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 181/317 (57%), Gaps = 5/317 (1%)
Query: 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD 274
AE+ ASGM A + + AG H+++ Y T E L K G+ ID A
Sbjct: 13 AEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAV 72
Query: 275 MEGLEAALNNNNVSLFFTESPTNPFLRCVDVK-LVSDLCHKKGAIVCIDGTFATPLNQKA 333
+E L N ++F E+P NP L+ +D++ V +K +V +D TFA+P+
Sbjct: 73 PGNIEKHLKPNTRIVYF-ETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNP 131
Query: 334 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGALNPNAAYLIIR 391
L LG D+V+HSATK+I GH DV+AG + ++ ++++ + + G ++P+ A+LI R
Sbjct: 132 LDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITR 191
Query: 392 GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 451
G TL +RV++ A ++A+ L H VK+V+YPGL HP H IA +QM FG +++F+
Sbjct: 192 GTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFD 251
Query: 452 VDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS 511
VDG L K +D + +A S GG ES++ PA M++ + + ER G+ DNL+R S
Sbjct: 252 VDG-LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLS 310
Query: 512 FGVEDFEDLKADVLQAL 528
G E+ +D+ D+ QAL
Sbjct: 311 VGCENVQDIIDDLKQAL 327
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 198/368 (53%), Gaps = 24/368 (6%)
Query: 180 TSAYFFKKTAELIDFKEKRRAS----FEYGRYGNPTTV----------GAESTVIMASGM 225
TS Y + A EK A + Y RYGNPT GA + ASGM
Sbjct: 51 TSGYVYGSAA----VAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGM 106
Query: 226 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 285
+A L AL+ AG +V + + +LP+ G+ +D D+ E AL+
Sbjct: 107 AAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVP 166
Query: 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 345
++FF E+P+NP VD+ V++L H GA V +D FATPL Q+ LG D+V++S
Sbjct: 167 TQAVFF-ETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSG 225
Query: 346 TKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 404
T I G VL G+I G + + ++ L G A++ A+++++G++TL +RVQ N
Sbjct: 226 TXHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSN 285
Query: 405 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD--GDLTATIKF 462
++A R+A+ L HP V+ V YP L SHP++ +A +QM+G G VV+F +D D+ F
Sbjct: 286 ASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAF 345
Query: 463 --IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL 520
+D +++ I+ + G +S+V PA ++ + R G+ D +VR S G+ED +DL
Sbjct: 346 EVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDL 405
Query: 521 KADVLQAL 528
AD+ +AL
Sbjct: 406 IADIDRAL 413
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 208/389 (53%), Gaps = 29/389 (7%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVGAE 216
AIHAGE + V ++ P+ ++ + A I ++EY R NP E
Sbjct: 12 AIHAGEHVD---VHGSVIEPISLSTTFKQSSPANPI-------GTYEYSRSQNPNRENLE 61
Query: 217 STV---------IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 267
V + S SA+T +L +P G H V+ D Y T + V G+
Sbjct: 62 RAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVET 121
Query: 268 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA----IVCIDG 323
+ + D+ L N L + E+PTNP L+ D++ V+DL K A I+ +D
Sbjct: 122 SFTN--DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179
Query: 324 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 382
TF +P L+ GAD+V+HSATK+I GH+DV+ G ++ + K L +++ L + +G +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239
Query: 383 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIATQQM 441
P A+L RG+KTLHLRV+Q +A ++A+ L A + V V+YPGLK+HP + + +Q
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQH 299
Query: 442 TGF--GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL 499
GG++SF + G A KF + ++ +A S GG ES+++ PA+M++ + + R
Sbjct: 300 RDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEARE 359
Query: 500 KYGIMDNLVRFSFGVEDFEDLKADVLQAL 528
G+ D+LVR S G+ED +DL D+ QAL
Sbjct: 360 ASGVFDDLVRISVGIEDTDDLLEDIKQAL 388
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 202 bits (513), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 193/372 (51%), Gaps = 26/372 (6%)
Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT----------VGAESTVIMA 222
+ P+ +S Y F F E R + +Y R GNPT G V+
Sbjct: 23 VVPPIHLSSTYNF------TGFNEPR--AHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 223 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 282
+GMSA ++ + G +V DCY + +++ + +D D + L AAL
Sbjct: 75 TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 283 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 342
L ESP+NP LR VD+ + L + GA+ +D TF +P Q L+LGADLVL
Sbjct: 135 AEKP-KLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVL 193
Query: 343 HSATKFIGGHNDVLAGS-ISGSGKLVTQIR---NLHHVLGGALNPNAAYLIIRGMKTLHL 398
HS T ++ GH+DV+AG I+ +VT++ N V GGA + +YL++RG++TL
Sbjct: 194 HSCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVP 250
Query: 399 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 458
R++ A + K L+ P VK++++P L + H IA +Q GFG ++SFE+DGD
Sbjct: 251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQT 310
Query: 459 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE 518
+F+ L + +A S GG ES++ A M++ ++ R GI + L+R S G+ED E
Sbjct: 311 LRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGE 370
Query: 519 DLKADVLQALHA 530
DL AD+ A
Sbjct: 371 DLIADLENGFRA 382
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 190/391 (48%), Gaps = 33/391 (8%)
Query: 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT----------VGAEST 218
V A+ TPV + +A+ F+ + E+ R Y R NPT GA
Sbjct: 41 VHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGV 100
Query: 219 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 278
+ + SGM+A + +L L AG +VTT + T + LP GI +D D +
Sbjct: 101 LALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAV 160
Query: 279 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 338
E A + L F E+ +NP L+ D++ +S + H KG + +D T P +A LG
Sbjct: 161 EHACDETT-KLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 339 DLVLHSATKFIGGHNDV------------------LAGSISGSGKLVTQIRNLHHV---L 377
D+ + S+TKFI G LA + +G + + V L
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 378 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIA 437
G +L+P+ AYL G++T+ LR+++ A +A L + P+VK V++P L P + IA
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIA 339
Query: 438 TQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSE 497
+Q G +++FE++ A+ +F+DALK+ A + +S++ P + Y S E
Sbjct: 340 KRQFRYAGSILTFELESK-EASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEE 398
Query: 498 RLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 528
RLK I ++R S G+E+ EDLK D+LQAL
Sbjct: 399 RLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 190/418 (45%), Gaps = 46/418 (11%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT-- 212
+L +HAG ++ + P+ T++Y FK + + Y R NPT
Sbjct: 5 TLQLHAGYEPEPTTLSRQV--PIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDV 62
Query: 213 --------VGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 264
G ++ + ASG +A + L L AG +IV+T + Y T + L ++G
Sbjct: 63 LEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122
Query: 265 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 324
I + AL + ++ ES NP L D++ ++ +KG + +D T
Sbjct: 123 IEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182
Query: 325 FATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------LVTQIRNLH 374
F + L+ GA LV HS TK++GGH V+AG+I G L+T+ + +
Sbjct: 183 FGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY 242
Query: 375 HVL-----------------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 411
H L G AL P A++++ GM+TL LR ++ L +A
Sbjct: 243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLA 302
Query: 412 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF-GGVVSFEVDGDLTATIKFIDALKIPY 470
L P+V V+YPGL HP H A + G G V++F + G A +FI LK+
Sbjct: 303 HWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLIS 362
Query: 471 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 528
+ G ++ PA ++ LS E+ + G+ +VR S G+E EDLKA++ +AL
Sbjct: 363 HLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 171/346 (49%), Gaps = 23/346 (6%)
Query: 197 KRRASFE--YGRYGNPTTV----------GAESTVIMASGMSASTVMLLALVPAGGHIVT 244
+ RA+ E YGR G T G V+ G +A +LA + G H++
Sbjct: 47 RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 106
Query: 245 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 304
T Y ++ F +L K+G+T + DP + L N + F ESP + + D
Sbjct: 107 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 165
Query: 305 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 362
V + AI+ ID T+A + KAL G D+ + +ATK++ GH+D + G+
Sbjct: 166 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVC 225
Query: 363 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 422
+ + Q+R +++G ++ + AY+ RG++TL +R++Q + ++L++A+ L HP+V R
Sbjct: 226 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVAR 285
Query: 423 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT--ATIKFIDALKIPYIAPSFGGCES 480
V++P L H + TG G+ SF + L ++D + +A S+GG ES
Sbjct: 286 VNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYES 345
Query: 481 IV--DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 524
++ +QP ++ + + + L+R G+ED +DL AD+
Sbjct: 346 LILANQPEHIA----AIRPQGEIDFSGTLIRLHIGLEDVDDLIADL 387
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 180/371 (48%), Gaps = 24/371 (6%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFE--YGRYGNPTTV----------GAESTV 219
A+ + + S+ F + E + RA+ E YGR G T G V
Sbjct: 43 AVNSVIQRASSLVFD-SVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCV 101
Query: 220 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 279
+ G +A +LA + G H++ T Y ++ F +L K+G+T + DP +
Sbjct: 102 LFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIV 161
Query: 280 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLG 337
L N + F ESP + + DV + AI+ ID T+A + KAL G
Sbjct: 162 KHLQPNT-KIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFG 220
Query: 338 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 397
D+ + +ATK++ GH+D + G+ + + Q+R +++G ++ + AY+ RG++TL
Sbjct: 221 IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG 280
Query: 398 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT 457
+R++Q + ++L++A+ L HP+V RV++P L H + TG G+ SF + L
Sbjct: 281 VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLN 340
Query: 458 --ATIKFIDALKIPYIAPSFGGCESIV--DQPAIMSYWDLSQSERLKYGIMDNLVRFSFG 513
++D + +A S+GG ES++ +QP ++ + + + L+R G
Sbjct: 341 NEELANYLDNFSLFSMAYSWGGYESLILANQPEHIA----AIRPQGEIDFSGTLIRLHIG 396
Query: 514 VEDFEDLKADV 524
+ED +DL AD+
Sbjct: 397 LEDVDDLIADL 407
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 170/346 (49%), Gaps = 23/346 (6%)
Query: 197 KRRASFE--YGRYGNPTTV----------GAESTVIMASGMSASTVMLLALVPAGGHIVT 244
+ RA+ E YGR G T G V+ G +A +LA + G H++
Sbjct: 47 RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 106
Query: 245 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 304
T Y ++ F +L K+G+T + DP + L N + F ESP + + D
Sbjct: 107 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 165
Query: 305 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 362
V + AI+ ID T+A + KAL G D+ + +AT ++ GH+D + G+
Sbjct: 166 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVC 225
Query: 363 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKR 422
+ + Q+R +++G ++ + AY+ RG++TL +R++Q + ++L++A+ L HP+V R
Sbjct: 226 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVAR 285
Query: 423 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT--ATIKFIDALKIPYIAPSFGGCES 480
V++P L H + TG G+ SF + L ++D + +A S+GG ES
Sbjct: 286 VNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYES 345
Query: 481 IV--DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 524
++ +QP ++ + + + L+R G+ED +DL AD+
Sbjct: 346 LILANQPEHIA----AIRPQGEIDFSGTLIRLHIGLEDVDDLIADL 387
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 196/402 (48%), Gaps = 50/402 (12%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFE---YGRYGNPTTV----------GAEST 218
A+ P+ +AY FK E ++R A+ E Y R +PT GA
Sbjct: 19 AVGLPIYAVAAYGFKTLEE----GQERFATGEGYVYARQKDPTAKALEERLKALEGALEA 74
Query: 219 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 278
V++ASG +A+ LLAL+ G +V + +T VL MG+T +DP + E +
Sbjct: 75 VVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAV 133
Query: 279 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLG 337
AL+ ++F E+ NP L D++ ++ L + G + +D TF A + L+ G
Sbjct: 134 REALSAKTRAVF-VETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192
Query: 338 ADLVLHSATKFIGGHNDVLAGSISG-----------------SGKLVTQ----------I 370
A +V+ S T + GH VL G++ G++ + +
Sbjct: 193 AHVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252
Query: 371 RNLHHVLGG-ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429
R L L G AL+P AYL+ +G++T+ LRV + + TA +A+ L+ HPKVK + YPGL
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLP 312
Query: 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS 489
P H A + + G +++ ++ GDL +F+ A+++ A + G +++ P +
Sbjct: 313 EDPAHRNARKYLASGGPILTLDL-GDLERASRFLGAIRL-LKAANLGDARTLLVHPWTTT 370
Query: 490 YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 531
+ L + RL+ G+ LVR S G+ED DL A +AL A+
Sbjct: 371 HSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEAV 412
>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans
pdb|3L8A|B Chain B, Crystal Structure Of Metc From Streptococcus Mutans
Length = 421
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 274 DMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCID 322
D E LE + +NNV ++ SP NP R D+ +++LC K G I+ D
Sbjct: 182 DFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSD 233
>pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
Length = 390
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 273 ADMEGLEAALNNNNVSLFFTESPTNP---FLRCVDVKLVSDLCHKKGAIVCID 322
DM LEA L + SP NP C ++++++DLC + G V D
Sbjct: 149 CDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISD 201
>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|2 Chain 2, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|3 Chain 3, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|4 Chain 4, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
Length = 323
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 23/111 (20%)
Query: 240 GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNN--NNVSLFFTESPTN 297
G ++ T D R + L K+G + DP ++E L NV+ F +++P N
Sbjct: 136 GSLLLTDDA----REVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPAN 191
Query: 298 PFLRC-VDVKLVSD---------------LCHKKGAIVCIDGTFATPLNQK 332
P++ V++ ++ + + K+G I +D + A P N K
Sbjct: 192 PYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMD-SLAIPANAK 241
>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With
Spermidine (monomer Form)
Length = 325
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 23/111 (20%)
Query: 240 GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNN--NNVSLFFTESPTN 297
G ++ T D R + L K+G + DP ++E L NV+ F +++P N
Sbjct: 138 GSLLLTDDA----REVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPAN 193
Query: 298 PFLRC-VDVKLVSD---------------LCHKKGAIVCIDGTFATPLNQK 332
P++ V++ ++ + + K+G I +D + A P N K
Sbjct: 194 PYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMD-SLAIPANAK 243
>pdb|3UAH|A Chain A, Structure Of The Shq1 Specific Domain From Saccharomyces
Cerevisiae
pdb|3UAI|D Chain D, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 366
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 420 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE 479
++R+ LK PE++++ +G E++G + +KF P I +
Sbjct: 65 IERLRKENLKFDPEYYVSEYMTHKYGNEEDLEING-IKELLKFT-----PSIVKQYLQWY 118
Query: 480 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530
P ++ + + E+ + + DNL + S+ VED + L +L L +
Sbjct: 119 KDSTNPNLVMPIEFTDEEQKQ--MQDNLPKKSYLVEDIKPLYVTILSVLFS 167
>pdb|3ZV0|A Chain A, Structure Of The Shq1p-Cbf5p Complex
pdb|3ZV0|B Chain B, Structure Of The Shq1p-Cbf5p Complex
Length = 369
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 420 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE 479
++R+ LK PE++++ +G E++G + +KF P I +
Sbjct: 62 IERLRKENLKFDPEYYVSEYMTHKYGNEEDLEING-IKELLKFT-----PSIVKQYLQWY 115
Query: 480 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530
P ++ + + E+ + + DNL + S+ VED + L +L L +
Sbjct: 116 KDSTNPNLVMPIEFTDEEQKQ--MQDNLPKKSYLVEDIKPLYVTILSVLFS 164
>pdb|3ZUZ|A Chain A, Structure Of Shq1p C-Terminal Domain
Length = 365
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 420 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE 479
++R+ LK PE++++ +G E++G + +KF P I +
Sbjct: 64 IERLRKENLKFDPEYYVSEYMTHKYGNEEDLEING-IKELLKFT-----PSIVKQYLQWY 117
Query: 480 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530
P ++ + + E+ + + DNL + S+ VED + L +L L +
Sbjct: 118 KDSTNPNLVMPIEFTDEEQKQ--MQDNLPKKSYLVEDIKPLYVTILSVLFS 166
>pdb|2AEU|A Chain A, Mj0158, Apo Form
Length = 374
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 304 DVKLVSDLCHKKGAIVCIDGTFATPL----NQK-ALSLGADLVLHSATKFIGGHNDVLAG 358
+ K V + K AIV +D + NQ AL LGADLV+ S K + G G
Sbjct: 160 NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR---GG 216
Query: 359 SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQ--QNSTALRMAKILE 415
++G +LV +I G P I R +K +L R+++ + + ++KI +
Sbjct: 217 LLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEK 276
Query: 416 AHPKVKRV 423
+ ++K +
Sbjct: 277 LNKELKAI 284
>pdb|1JZD|A Chain A, Dsbc-Dsbdalpha Complex
pdb|1JZD|B Chain B, Dsbc-Dsbdalpha Complex
Length = 220
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 256 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTE 293
I+ L KMGI ++ I PA + G++ L N+ V L+ T+
Sbjct: 9 IQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGV-LYITD 45
>pdb|1G0T|A Chain A, Dsbc Mutant C101s
pdb|1G0T|B Chain B, Dsbc Mutant C101s
pdb|1JZO|A Chain A, Dsbc C101s
pdb|1JZO|B Chain B, Dsbc C101s
Length = 216
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 256 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTE 293
I+ L KMGI ++ I PA + G++ L N+ V L+ T+
Sbjct: 5 IQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGV-LYITD 41
>pdb|2IYJ|A Chain A, Crystal Structure Of The N-Terminal Dimer Domain Of E.Coli
Dsbc
pdb|2IYJ|B Chain B, Crystal Structure Of The N-Terminal Dimer Domain Of E.Coli
Dsbc
Length = 75
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 256 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTE 293
I+ L KMGI ++ I PA + G++ L N+ V L+ T+
Sbjct: 9 IQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGV-LYITD 45
>pdb|1EEJ|A Chain A, Crystal Structure Of The Protein Disulfide Bond Isomerase,
Dsbc, From Escherichia Coli
pdb|1EEJ|B Chain B, Crystal Structure Of The Protein Disulfide Bond Isomerase,
Dsbc, From Escherichia Coli
pdb|1TJD|A Chain A, The Crystal Structure Of The Reduced Disulphide Bond
Isomerase, Dsbc, From Escherichia Coli
Length = 216
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 256 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTE 293
I+ L KMGI ++ I PA + G++ L N+ V L+ T+
Sbjct: 5 IQQTLAKMGIKSSDIQPAPVAGMKTVLTNSGV-LYITD 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,364,004
Number of Sequences: 62578
Number of extensions: 511693
Number of successful extensions: 1314
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 42
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)