Query 009604
Match_columns 531
No_of_seqs 518 out of 3430
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ri6_A O-acetylhomoserine sulf 100.0 2.4E-64 8.2E-69 538.6 33.4 375 150-529 24-430 (430)
2 1qgn_A Protein (cystathionine 100.0 6.6E-62 2.2E-66 521.8 40.5 386 145-531 49-445 (445)
3 3ndn_A O-succinylhomoserine su 100.0 6E-62 2.1E-66 517.7 38.0 374 152-529 26-414 (414)
4 3nmy_A Xometc, cystathionine g 100.0 2.5E-61 8.4E-66 510.8 35.5 366 152-529 19-397 (400)
5 2fq6_A Cystathionine beta-lyas 100.0 8E-60 2.8E-64 501.5 35.5 373 152-531 25-414 (415)
6 3qhx_A Cystathionine gamma-syn 100.0 1.2E-56 4.1E-61 472.9 38.9 365 152-529 17-392 (392)
7 3acz_A Methionine gamma-lyase; 100.0 1.6E-55 5.4E-60 463.4 39.7 374 152-531 5-389 (389)
8 3cog_A Cystathionine gamma-lya 100.0 5.6E-55 1.9E-59 462.1 38.3 367 152-530 18-397 (403)
9 2ctz_A O-acetyl-L-homoserine s 100.0 1.6E-53 5.4E-58 453.1 35.2 374 153-529 3-421 (421)
10 1n8p_A Cystathionine gamma-lya 100.0 1.1E-52 3.7E-57 443.0 33.1 366 152-530 7-390 (393)
11 1gc0_A Methionine gamma-lyase; 100.0 7.8E-52 2.7E-56 436.1 35.5 376 152-530 9-396 (398)
12 1e5e_A MGL, methionine gamma-l 100.0 4.1E-50 1.4E-54 424.6 38.1 375 152-530 7-394 (404)
13 2cb1_A O-acetyl homoserine sul 100.0 8.8E-50 3E-54 422.5 40.3 371 153-531 3-412 (412)
14 2rfv_A Methionine gamma-lyase; 100.0 1.1E-46 3.8E-51 396.3 38.0 376 152-530 8-395 (398)
15 1cs1_A CGS, protein (cystathio 100.0 4.8E-45 1.6E-49 381.9 38.8 368 152-530 4-382 (386)
16 1ibj_A CBL, cystathionine beta 100.0 3.4E-45 1.2E-49 394.3 36.9 364 153-530 87-461 (464)
17 1pff_A Methionine gamma-lyase; 100.0 3.2E-39 1.1E-43 329.6 33.9 315 215-531 13-330 (331)
18 3i16_A Aluminum resistance pro 100.0 5.3E-33 1.8E-37 296.0 23.5 301 214-531 87-425 (427)
19 3hvy_A Cystathionine beta-lyas 100.0 1.8E-32 6.3E-37 291.8 24.1 302 214-531 88-425 (427)
20 3jzl_A Putative cystathionine 100.0 7.2E-32 2.4E-36 285.9 22.8 299 214-530 73-407 (409)
21 1t3i_A Probable cysteine desul 99.9 4E-25 1.4E-29 231.2 29.2 281 216-529 91-407 (420)
22 3op7_A Aminotransferase class 99.9 2E-25 7E-30 231.0 24.9 269 214-529 80-369 (375)
23 1fc4_A 2-amino-3-ketobutyrate 99.9 8.4E-25 2.9E-29 228.4 28.1 269 214-529 104-391 (401)
24 3ffh_A Histidinol-phosphate am 99.9 1.9E-24 6.6E-29 222.7 30.2 261 215-530 84-361 (363)
25 4hvk_A Probable cysteine desul 99.9 3.7E-25 1.3E-29 227.7 24.5 282 216-529 61-367 (382)
26 1bs0_A Protein (8-amino-7-oxon 99.9 1.3E-24 4.6E-29 225.6 28.4 269 214-530 98-382 (384)
27 3cai_A Possible aminotransfera 99.9 7.2E-25 2.5E-29 229.1 26.3 279 216-531 87-405 (406)
28 1kmj_A Selenocysteine lyase; p 99.9 1.4E-24 4.8E-29 225.8 27.8 278 216-530 86-400 (406)
29 3lvm_A Cysteine desulfurase; s 99.9 9.2E-25 3.2E-29 229.5 26.0 284 215-529 85-393 (423)
30 3ht4_A Aluminum resistance pro 99.9 1.6E-25 5.4E-30 238.8 20.1 240 215-470 80-345 (431)
31 3tqx_A 2-amino-3-ketobutyrate 99.9 1.4E-24 4.8E-29 225.8 26.5 269 214-529 102-390 (399)
32 1jg8_A L-ALLO-threonine aldola 99.9 4.1E-25 1.4E-29 226.1 20.9 268 214-529 52-340 (347)
33 3get_A Histidinol-phosphate am 99.9 3.1E-24 1E-28 221.3 27.6 261 215-528 82-364 (365)
34 2dr1_A PH1308 protein, 386AA l 99.9 4.1E-24 1.4E-28 221.0 27.3 270 216-529 72-373 (386)
35 3euc_A Histidinol-phosphate am 99.9 1.9E-24 6.7E-29 223.0 24.6 260 216-529 86-362 (367)
36 3dzz_A Putative pyridoxal 5'-p 99.9 4.5E-24 1.5E-28 221.4 27.4 273 215-530 85-388 (391)
37 3zrp_A Serine-pyruvate aminotr 99.9 4E-24 1.4E-28 220.7 26.5 269 216-529 55-357 (384)
38 2w8t_A SPT, serine palmitoyltr 99.9 4.1E-24 1.4E-28 226.4 27.0 270 214-529 123-409 (427)
39 1b5p_A Protein (aspartate amin 99.9 5.4E-24 1.8E-28 222.0 26.6 252 215-513 91-365 (385)
40 3a2b_A Serine palmitoyltransfe 99.9 1.2E-23 4.1E-28 219.6 29.0 267 214-528 102-385 (398)
41 3vax_A Putative uncharacterize 99.9 1.8E-24 6E-29 225.4 22.6 283 216-530 81-395 (400)
42 1elu_A L-cysteine/L-cystine C- 99.9 4.7E-24 1.6E-28 220.9 25.7 271 216-531 77-388 (390)
43 4eb5_A Probable cysteine desul 99.9 4.7E-24 1.6E-28 220.3 25.0 284 216-529 61-367 (382)
44 3ly1_A Putative histidinol-pho 99.9 4.1E-24 1.4E-28 219.2 24.3 262 215-529 68-350 (354)
45 2z61_A Probable aspartate amin 99.9 7.2E-24 2.4E-28 219.2 25.7 262 215-528 89-364 (370)
46 3kki_A CAI-1 autoinducer synth 99.9 1.1E-23 3.7E-28 221.3 26.2 267 214-529 118-398 (409)
47 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 2.6E-24 8.7E-29 221.7 20.9 265 217-529 71-364 (371)
48 1fg7_A Histidinol phosphate am 99.9 2.5E-23 8.5E-28 215.0 28.3 258 216-530 76-353 (356)
49 3frk_A QDTB; aminotransferase, 99.9 1.5E-24 5.2E-29 224.8 18.8 287 214-531 50-364 (373)
50 3hdo_A Histidinol-phosphate am 99.9 1.9E-23 6.6E-28 215.4 26.3 262 215-530 82-350 (360)
51 3ju7_A Putative PLP-dependent 99.9 9.9E-24 3.4E-28 220.7 24.2 288 215-530 53-370 (377)
52 3nra_A Aspartate aminotransfer 99.9 2.8E-24 9.7E-29 224.4 19.8 269 216-529 103-403 (407)
53 4dq6_A Putative pyridoxal phos 99.9 3.3E-23 1.1E-27 214.9 27.2 267 215-528 90-386 (391)
54 1j32_A Aspartate aminotransfer 99.9 2E-23 6.7E-28 217.1 25.4 200 215-420 90-313 (388)
55 1eg5_A Aminotransferase; PLP-d 99.9 1.3E-23 4.5E-28 216.8 23.8 283 216-528 62-369 (384)
56 3nyt_A Aminotransferase WBPE; 99.9 2E-23 6.7E-28 216.3 24.8 286 214-530 49-359 (367)
57 3ffr_A Phosphoserine aminotran 99.9 1.3E-23 4.4E-28 215.1 22.7 267 215-530 61-359 (362)
58 1c7n_A Cystalysin; transferase 99.9 1.1E-22 3.8E-27 212.2 29.8 272 215-529 89-391 (399)
59 1o4s_A Aspartate aminotransfer 99.9 2.2E-23 7.6E-28 217.6 24.4 250 215-514 101-370 (389)
60 3kax_A Aminotransferase, class 99.9 5.7E-23 2E-27 212.5 27.0 269 215-529 82-379 (383)
61 1b9h_A AHBA synthase, protein 99.9 2.7E-23 9.4E-28 216.2 24.3 289 214-530 52-383 (388)
62 2aeu_A Hypothetical protein MJ 99.9 1.4E-23 4.8E-28 219.0 22.0 191 216-416 77-279 (374)
63 3h14_A Aminotransferase, class 99.9 3.8E-23 1.3E-27 215.3 25.1 255 214-514 90-363 (391)
64 2r2n_A Kynurenine/alpha-aminoa 99.9 1.1E-22 3.9E-27 215.0 29.1 273 216-529 109-422 (425)
65 1u08_A Hypothetical aminotrans 99.9 8.8E-23 3E-27 212.2 27.5 271 215-530 90-385 (386)
66 3uwc_A Nucleotide-sugar aminot 99.9 7.9E-24 2.7E-28 218.7 19.1 285 214-530 52-366 (374)
67 3jtx_A Aminotransferase; NP_28 99.9 5.3E-23 1.8E-27 214.1 25.4 271 215-529 90-392 (396)
68 3fdb_A Beta C-S lyase, putativ 99.9 1.6E-23 5.5E-28 216.4 21.2 270 215-529 81-374 (377)
69 3nnk_A Ureidoglycine-glyoxylat 99.9 1.9E-23 6.6E-28 218.1 21.9 269 218-529 67-384 (411)
70 3f9t_A TDC, L-tyrosine decarbo 99.9 2.6E-23 8.8E-28 215.0 22.5 261 216-530 87-393 (397)
71 2dou_A Probable N-succinyldiam 99.9 3.8E-23 1.3E-27 214.2 23.5 264 217-529 89-372 (376)
72 3e2y_A Kynurenine-oxoglutarate 99.9 1.5E-22 5E-27 211.8 28.0 273 216-530 86-408 (410)
73 3dyd_A Tyrosine aminotransfera 99.9 2.8E-22 9.6E-27 212.3 30.4 268 215-529 118-422 (427)
74 3ftb_A Histidinol-phosphate am 99.9 1.4E-22 4.8E-27 208.1 27.3 263 215-530 78-360 (361)
75 3isl_A Purine catabolism prote 99.9 5.1E-23 1.7E-27 215.2 24.1 271 216-529 62-388 (416)
76 1gd9_A Aspartate aminotransfer 99.9 5.4E-23 1.8E-27 213.9 24.0 269 215-529 86-384 (389)
77 3fvs_A Kynurenine--oxoglutarat 99.9 9.3E-23 3.2E-27 214.4 25.5 275 216-530 92-421 (422)
78 3g0t_A Putative aminotransfera 99.9 5.6E-23 1.9E-27 217.0 23.9 276 215-529 105-435 (437)
79 1v2d_A Glutamine aminotransfer 99.9 1.7E-22 5.8E-27 209.7 26.7 264 215-528 78-364 (381)
80 1lc5_A COBD, L-threonine-O-3-p 99.9 1.6E-22 5.4E-27 208.9 25.7 263 215-529 76-358 (364)
81 3ele_A Amino transferase; RER0 99.9 1.2E-22 4E-27 212.0 24.7 265 215-529 99-394 (398)
82 1iug_A Putative aspartate amin 99.9 8E-23 2.7E-27 208.7 23.0 265 216-529 52-342 (352)
83 1vjo_A Alanine--glyoxylate ami 99.9 5.1E-23 1.8E-27 214.1 21.8 270 217-529 87-389 (393)
84 1d2f_A MALY protein; aminotran 99.9 4.9E-22 1.7E-26 206.9 29.2 257 215-515 87-371 (390)
85 1yiz_A Kynurenine aminotransfe 99.9 2.7E-22 9.2E-27 211.7 27.5 272 215-528 100-422 (429)
86 2x5d_A Probable aminotransfera 99.9 1.7E-22 5.7E-27 212.4 25.6 254 216-514 100-379 (412)
87 1xi9_A Putative transaminase; 99.9 9.5E-23 3.2E-27 213.8 23.6 270 215-529 101-401 (406)
88 3aow_A Putative uncharacterize 99.9 2.9E-22 9.9E-27 214.1 27.5 272 215-529 140-443 (448)
89 3cq5_A Histidinol-phosphate am 99.9 2E-22 6.9E-27 208.7 25.3 232 216-476 93-338 (369)
90 2z9v_A Aspartate aminotransfer 99.9 1.2E-22 4.3E-27 210.8 23.6 242 216-476 60-334 (392)
91 2oga_A Transaminase; PLP-depen 99.9 5.1E-23 1.7E-27 215.8 20.6 287 214-530 77-391 (399)
92 2o1b_A Aminotransferase, class 99.9 1.4E-22 4.7E-27 213.0 23.6 253 216-514 110-384 (404)
93 3l8a_A METC, putative aminotra 99.9 1.6E-22 5.6E-27 213.4 24.3 269 215-528 119-415 (421)
94 3fkd_A L-threonine-O-3-phospha 99.9 1.6E-22 5.4E-27 207.5 23.5 261 215-529 67-340 (350)
95 2zyj_A Alpha-aminodipate amino 99.9 1.3E-22 4.3E-27 212.1 23.1 272 215-529 91-391 (397)
96 2zc0_A Alanine glyoxylate tran 99.9 2.4E-22 8.1E-27 210.2 25.1 273 215-530 98-403 (407)
97 2bkw_A Alanine-glyoxylate amin 99.9 3.1E-22 1.1E-26 206.8 25.7 272 215-530 59-383 (385)
98 3lws_A Aromatic amino acid bet 99.9 7.1E-23 2.4E-27 210.5 20.7 240 214-476 61-319 (357)
99 1vp4_A Aminotransferase, putat 99.9 8.1E-23 2.8E-27 216.0 21.6 272 215-529 109-416 (425)
100 2x5f_A Aspartate_tyrosine_phen 99.9 2.6E-22 9E-27 212.0 25.2 262 218-530 116-428 (430)
101 3kgw_A Alanine-glyoxylate amin 99.9 8.9E-23 3.1E-27 211.2 21.1 271 217-529 76-386 (393)
102 1m32_A 2-aminoethylphosphonate 99.9 8.9E-23 3.1E-27 208.9 20.6 271 216-530 57-360 (366)
103 3ruy_A Ornithine aminotransfer 99.9 4.5E-22 1.5E-26 207.3 26.1 267 214-530 92-389 (392)
104 3ezs_A Aminotransferase ASPB; 99.9 1.1E-22 3.7E-27 210.3 21.2 263 215-528 82-372 (376)
105 2o0r_A RV0858C (N-succinyldiam 99.9 3.2E-22 1.1E-26 210.1 25.0 277 217-529 88-390 (411)
106 2huf_A Alanine glyoxylate amin 99.9 1.5E-22 5.2E-27 210.2 22.2 270 217-529 72-381 (393)
107 3b46_A Aminotransferase BNA3; 99.9 5.7E-22 1.9E-26 211.3 26.7 273 215-529 118-441 (447)
108 3p1t_A Putative histidinol-pho 99.9 7.1E-22 2.4E-26 200.9 26.1 252 216-529 69-331 (337)
109 2gb3_A Aspartate aminotransfer 99.9 4.8E-22 1.6E-26 208.9 25.5 271 215-529 102-400 (409)
110 2bwn_A 5-aminolevulinate synth 99.9 7.1E-22 2.4E-26 206.4 26.6 266 214-530 105-395 (401)
111 3pj0_A LMO0305 protein; struct 99.9 1.7E-22 5.7E-27 207.6 21.1 259 215-516 63-340 (359)
112 3dr4_A Putative perosamine syn 99.9 3.5E-22 1.2E-26 208.2 23.4 289 214-531 70-389 (391)
113 1mdo_A ARNB aminotransferase; 99.9 5.7E-22 1.9E-26 206.2 23.9 287 214-530 53-381 (393)
114 1iay_A ACC synthase 2, 1-amino 99.9 1.4E-21 4.8E-26 206.3 25.8 268 215-528 108-420 (428)
115 2ch1_A 3-hydroxykynurenine tra 99.9 5.5E-22 1.9E-26 206.3 22.3 271 217-529 71-381 (396)
116 3f0h_A Aminotransferase; RER07 99.9 7.9E-22 2.7E-26 203.6 23.4 266 217-529 72-368 (376)
117 3if2_A Aminotransferase; YP_26 99.9 9.5E-22 3.3E-26 208.4 24.4 283 214-529 105-438 (444)
118 1bw0_A TAT, protein (tyrosine 99.9 1.5E-21 5.1E-26 205.0 25.4 253 215-514 104-394 (416)
119 2fnu_A Aminotransferase; prote 99.9 1E-21 3.6E-26 202.4 23.1 289 214-530 46-367 (375)
120 3g7q_A Valine-pyruvate aminotr 99.9 1.6E-21 5.5E-26 204.3 24.8 280 214-529 97-411 (417)
121 2yrr_A Aminotransferase, class 99.9 4.8E-22 1.7E-26 202.4 20.1 239 216-477 53-317 (353)
122 3ppl_A Aspartate aminotransfer 99.9 1.8E-21 6E-26 205.7 23.8 274 214-529 94-418 (427)
123 2c81_A Glutamine-2-deoxy-scyll 99.9 3.8E-21 1.3E-25 202.5 26.2 290 214-530 56-409 (418)
124 3t18_A Aminotransferase class 99.9 1.2E-21 4.1E-26 205.7 21.6 260 216-530 102-409 (413)
125 3a9z_A Selenocysteine lyase; P 99.9 4.1E-21 1.4E-25 202.6 25.6 290 216-529 79-422 (432)
126 3piu_A 1-aminocyclopropane-1-c 99.9 7.7E-21 2.6E-25 201.3 26.9 270 214-529 110-430 (435)
127 1qz9_A Kynureninase; kynurenin 99.9 3.2E-21 1.1E-25 202.0 23.6 264 216-529 89-396 (416)
128 3e9k_A Kynureninase; kynurenin 99.9 9.7E-22 3.3E-26 210.3 19.6 269 215-529 128-455 (465)
129 3ez1_A Aminotransferase MOCR f 99.9 9.3E-21 3.2E-25 199.5 26.4 273 215-529 87-413 (423)
130 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.2E-20 4.2E-25 196.7 26.7 286 214-528 48-389 (390)
131 3rq1_A Aminotransferase class 99.9 4.6E-21 1.6E-25 201.5 23.3 259 217-530 104-414 (418)
132 1v72_A Aldolase; PLP-dependent 99.9 2.3E-20 7.9E-25 190.7 27.7 262 214-530 57-348 (356)
133 3tcm_A Alanine aminotransferas 99.9 1.9E-20 6.6E-25 202.9 28.2 272 215-529 157-492 (500)
134 3mad_A Sphingosine-1-phosphate 99.9 6.9E-21 2.4E-25 206.6 23.5 258 219-529 164-467 (514)
135 4adb_A Succinylornithine trans 99.9 8.3E-21 2.8E-25 198.2 22.0 269 214-529 95-394 (406)
136 2eh6_A Acoat, acetylornithine 99.9 7.5E-21 2.6E-25 196.4 21.4 261 216-530 87-373 (375)
137 3hbx_A GAD 1, glutamate decarb 99.9 1.4E-20 4.6E-25 204.3 23.7 271 217-529 119-442 (502)
138 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 3E-20 1E-24 197.3 25.6 293 214-530 76-431 (437)
139 1vef_A Acetylornithine/acetyl- 99.9 5.9E-21 2E-25 199.0 19.3 265 214-530 103-392 (395)
140 3ihj_A Alanine aminotransferas 99.9 4.4E-20 1.5E-24 200.0 26.8 202 215-421 153-406 (498)
141 2po3_A 4-dehydrase; external a 99.9 1.1E-19 3.7E-24 191.9 29.0 287 214-529 66-380 (424)
142 3d6k_A Putative aminotransfera 99.9 2.3E-20 8E-25 197.1 23.3 272 215-529 93-416 (422)
143 3mc6_A Sphingosine-1-phosphate 99.9 1.3E-20 4.6E-25 203.1 21.6 263 216-530 127-436 (497)
144 3nx3_A Acoat, acetylornithine 99.9 2.3E-20 7.9E-25 194.7 22.6 265 214-529 92-389 (395)
145 2dkj_A Serine hydroxymethyltra 99.9 1.9E-20 6.5E-25 195.3 21.3 271 218-529 88-386 (407)
146 1uu1_A Histidinol-phosphate am 99.9 4.7E-20 1.6E-24 188.3 23.1 246 215-530 76-333 (335)
147 1svv_A Threonine aldolase; str 99.8 3.2E-20 1.1E-24 189.6 20.8 262 215-530 66-353 (359)
148 3qgu_A LL-diaminopimelate amin 99.8 1.4E-20 4.9E-25 199.8 18.7 267 215-528 132-437 (449)
149 7aat_A Aspartate aminotransfer 99.8 8.8E-20 3E-24 190.5 23.6 198 215-417 94-336 (401)
150 3ke3_A Putative serine-pyruvat 99.8 5.3E-20 1.8E-24 191.7 21.8 272 217-529 53-374 (379)
151 2dgk_A GAD-beta, GADB, glutama 99.8 6.4E-20 2.2E-24 195.7 22.8 272 217-529 105-428 (452)
152 1o69_A Aminotransferase; struc 99.8 2.7E-19 9.3E-24 187.2 26.9 288 214-530 46-382 (394)
153 3n0l_A Serine hydroxymethyltra 99.8 1.2E-19 4.2E-24 189.8 24.0 236 218-476 90-343 (417)
154 3f6t_A Aspartate aminotransfer 99.8 5.7E-20 2E-24 200.8 21.6 144 216-365 165-330 (533)
155 2ord_A Acoat, acetylornithine 99.8 4.3E-20 1.5E-24 192.8 18.0 269 214-531 96-397 (397)
156 3b1d_A Betac-S lyase; HET: PLP 99.7 2.6E-22 8.9E-27 209.5 0.0 270 215-528 89-390 (392)
157 3ei9_A LL-diaminopimelate amin 99.8 1.8E-19 6.3E-24 190.3 21.7 253 215-514 119-409 (432)
158 1z7d_A Ornithine aminotransfer 99.8 2.8E-19 9.6E-24 190.0 23.0 272 214-529 121-423 (433)
159 2oat_A Ornithine aminotransfer 99.8 4.6E-19 1.6E-23 188.8 24.7 270 214-529 132-433 (439)
160 2pb2_A Acetylornithine/succiny 99.8 4.9E-19 1.7E-23 187.2 24.6 265 214-528 113-411 (420)
161 2c0r_A PSAT, phosphoserine ami 99.8 3.3E-20 1.1E-24 191.1 15.2 259 217-530 69-356 (362)
162 1w23_A Phosphoserine aminotran 99.8 2.1E-20 7.1E-25 191.8 12.8 260 216-530 67-355 (360)
163 3bwn_A AT1G70560, L-tryptophan 99.8 2.2E-19 7.6E-24 188.2 20.6 268 217-529 93-381 (391)
164 3ecd_A Serine hydroxymethyltra 99.8 6.2E-19 2.1E-23 184.6 23.9 239 215-476 93-351 (425)
165 1rv3_A Serine hydroxymethyltra 99.8 1.4E-19 5E-24 195.2 18.8 196 218-420 113-346 (483)
166 2z67_A O-phosphoseryl-tRNA(SEC 99.8 7.5E-19 2.6E-23 188.1 24.2 267 218-531 152-454 (456)
167 3gbx_A Serine hydroxymethyltra 99.8 1.7E-19 6E-24 188.6 18.2 235 218-475 95-349 (420)
168 3asa_A LL-diaminopimelate amin 99.8 6E-19 2E-23 184.7 22.3 239 215-478 95-359 (400)
169 3fsl_A Aromatic-amino-acid ami 99.8 3.9E-19 1.3E-23 185.0 20.5 196 217-417 97-333 (397)
170 2vi8_A Serine hydroxymethyltra 99.8 1.8E-19 6.2E-24 187.7 17.9 272 218-529 88-385 (405)
171 1ajs_A Aspartate aminotransfer 99.8 8E-19 2.7E-23 183.9 22.9 198 215-417 97-344 (412)
172 3meb_A Aspartate aminotransfer 99.8 5.8E-19 2E-23 188.3 21.5 201 216-417 118-371 (448)
173 1wyu_B Glycine dehydrogenase s 99.8 2.8E-19 9.6E-24 192.3 18.4 198 214-417 121-363 (474)
174 4f4e_A Aromatic-amino-acid ami 99.8 4.8E-19 1.6E-23 186.8 19.3 196 217-417 119-355 (420)
175 1ax4_A Tryptophanase; tryptoph 99.8 1.2E-18 4.1E-23 185.7 21.6 281 214-530 90-436 (467)
176 2ez2_A Beta-tyrosinase, tyrosi 99.8 2.4E-18 8.3E-23 183.0 23.6 194 214-417 89-332 (456)
177 4eu1_A Mitochondrial aspartate 99.8 1.6E-18 5.5E-23 181.7 21.0 195 219-417 108-344 (409)
178 3vp6_A Glutamate decarboxylase 99.8 3.9E-18 1.3E-22 185.4 24.3 202 216-422 155-413 (511)
179 2q7w_A Aspartate aminotransfer 99.8 1.9E-18 6.6E-23 179.6 21.0 198 215-417 92-332 (396)
180 1yaa_A Aspartate aminotransfer 99.8 2.3E-18 7.7E-23 180.6 21.3 198 215-417 96-344 (412)
181 3h7f_A Serine hydroxymethyltra 99.8 8.4E-19 2.9E-23 187.0 18.3 197 215-417 106-321 (447)
182 1sff_A 4-aminobutyrate aminotr 99.8 3.4E-18 1.2E-22 179.7 22.7 265 216-529 103-418 (426)
183 1js3_A DDC;, DOPA decarboxylas 99.8 3E-18 1E-22 184.4 22.3 228 216-467 140-428 (486)
184 1s0a_A Adenosylmethionine-8-am 99.8 6.3E-18 2.2E-22 178.5 24.1 270 214-530 102-419 (429)
185 3dxv_A Alpha-amino-epsilon-cap 99.8 2.2E-18 7.6E-23 182.5 20.2 265 216-528 105-418 (439)
186 2x3l_A ORN/Lys/Arg decarboxyla 99.8 5E-19 1.7E-23 189.2 15.0 142 216-368 72-230 (446)
187 2fyf_A PSAT, phosphoserine ami 99.8 2.8E-18 9.5E-23 179.5 19.7 268 216-529 97-392 (398)
188 2ay1_A Aroat, aromatic amino a 99.8 1E-18 3.5E-23 181.8 15.8 198 215-417 89-329 (394)
189 3a8u_X Omega-amino acid--pyruv 99.8 1E-17 3.4E-22 178.2 23.5 269 214-529 109-441 (449)
190 2a7v_A Serine hydroxymethyltra 99.8 7.4E-18 2.5E-22 182.1 22.7 240 214-476 114-396 (490)
191 2hox_A ALLIIN lyase 1; cystein 99.8 1.7E-18 5.7E-23 184.0 17.1 258 215-514 123-406 (427)
192 1c4k_A Protein (ornithine deca 99.8 1.1E-17 3.9E-22 188.5 24.6 202 214-421 187-443 (730)
193 2okj_A Glutamate decarboxylase 99.8 1.5E-17 5.2E-22 180.0 24.1 203 215-421 151-409 (504)
194 2eo5_A 419AA long hypothetical 99.8 9.1E-18 3.1E-22 177.2 21.7 262 215-529 104-412 (419)
195 4e1o_A HDC, histidine decarbox 99.8 1.3E-17 4.3E-22 179.9 23.1 231 216-468 146-433 (481)
196 2qma_A Diaminobutyrate-pyruvat 99.8 5.6E-18 1.9E-22 183.0 20.0 270 216-529 159-490 (497)
197 2zy4_A L-aspartate beta-decarb 99.8 2.1E-17 7.3E-22 181.1 24.1 151 216-370 166-338 (546)
198 2vyc_A Biodegradative arginine 99.8 8.8E-18 3E-22 190.5 21.0 198 214-419 219-466 (755)
199 1wyu_A Glycine dehydrogenase ( 99.8 2.6E-17 8.9E-22 174.8 23.2 260 219-530 129-435 (438)
200 1zod_A DGD, 2,2-dialkylglycine 99.8 2.9E-17 9.9E-22 173.5 23.2 270 215-529 102-426 (433)
201 3k40_A Aromatic-L-amino-acid d 99.8 2.9E-17 9.8E-22 176.9 21.7 231 216-468 140-426 (475)
202 2jis_A Cysteine sulfinic acid 99.8 5.8E-17 2E-21 176.0 24.2 202 216-421 166-424 (515)
203 3i4j_A Aminotransferase, class 99.8 8.3E-17 2.8E-21 170.0 24.1 274 215-529 89-426 (430)
204 2oqx_A Tryptophanase; lyase, p 99.7 2E-17 6.9E-22 176.2 17.1 280 214-529 88-436 (467)
205 3k7y_A Aspartate aminotransfer 99.7 1.1E-16 3.8E-21 169.1 22.6 192 218-415 100-333 (405)
206 3dod_A Adenosylmethionine-8-am 99.7 2.6E-17 8.9E-22 175.3 17.9 219 215-454 104-380 (448)
207 3n5m_A Adenosylmethionine-8-am 99.7 1.1E-16 3.8E-21 170.4 22.1 269 218-529 110-446 (452)
208 3gju_A Putative aminotransfera 99.7 2.7E-16 9.3E-21 168.1 25.0 268 214-528 111-449 (460)
209 3tfu_A Adenosylmethionine-8-am 99.7 7E-17 2.4E-21 173.0 20.3 267 214-528 134-446 (457)
210 3l44_A Glutamate-1-semialdehyd 99.7 1.4E-16 4.7E-21 168.5 20.8 199 214-416 110-342 (434)
211 4a6r_A Omega transaminase; tra 99.7 3.2E-16 1.1E-20 167.5 23.5 266 214-528 110-442 (459)
212 2epj_A Glutamate-1-semialdehyd 99.7 5.9E-17 2E-21 171.4 17.5 241 214-476 111-401 (434)
213 3oks_A 4-aminobutyrate transam 99.7 1.4E-16 4.6E-21 170.2 20.2 268 215-529 122-445 (451)
214 2cjg_A L-lysine-epsilon aminot 99.7 1.6E-16 5.3E-21 169.6 19.9 261 215-529 119-442 (449)
215 2cy8_A D-phgat, D-phenylglycin 99.7 2E-16 6.8E-21 168.5 20.4 197 215-416 113-343 (453)
216 3e77_A Phosphoserine aminotran 99.7 1.4E-16 4.7E-21 166.7 17.4 263 217-530 78-370 (377)
217 4ffc_A 4-aminobutyrate aminotr 99.7 8.8E-16 3E-20 164.1 23.3 267 215-528 125-442 (453)
218 3k28_A Glutamate-1-semialdehyd 99.7 1.7E-16 5.8E-21 167.8 16.7 199 214-416 108-339 (429)
219 4e77_A Glutamate-1-semialdehyd 99.7 3E-16 1E-20 165.8 18.1 241 214-476 108-399 (429)
220 3qm2_A Phosphoserine aminotran 99.7 8.6E-17 2.9E-21 168.9 13.0 259 217-530 92-380 (386)
221 3hmu_A Aminotransferase, class 99.7 1.9E-15 6.5E-20 162.6 23.8 222 214-454 115-388 (472)
222 3i5t_A Aminotransferase; pyrid 99.7 4.6E-15 1.6E-19 159.6 26.5 223 214-454 113-391 (476)
223 2e7u_A Glutamate-1-semialdehyd 99.7 8.2E-16 2.8E-20 162.1 20.1 239 215-476 108-397 (424)
224 3fq8_A Glutamate-1-semialdehyd 99.7 3.1E-16 1E-20 165.4 16.4 198 215-416 108-339 (427)
225 3m5u_A Phosphoserine aminotran 99.6 1.7E-15 5.8E-20 157.6 16.7 257 217-530 70-355 (361)
226 1ohv_A 4-aminobutyrate aminotr 99.6 7.7E-15 2.6E-19 157.8 19.8 263 214-529 126-465 (472)
227 3n75_A LDC, lysine decarboxyla 99.6 7.7E-15 2.6E-19 164.6 18.4 196 214-418 209-443 (715)
228 2yky_A Beta-transaminase; tran 99.3 3.1E-16 1.1E-20 168.5 0.0 221 215-454 156-398 (465)
229 4h51_A Aspartate aminotransfer 99.5 8.5E-13 2.9E-17 140.0 25.2 195 218-417 112-351 (420)
230 3hl2_A O-phosphoseryl-tRNA(SEC 99.5 1.6E-13 5.3E-18 145.0 17.7 196 216-417 135-355 (501)
231 3bc8_A O-phosphoseryl-tRNA(SEC 99.5 4.5E-12 1.5E-16 134.8 24.3 196 217-418 118-338 (450)
232 3ou5_A Serine hydroxymethyltra 99.4 3E-12 1E-16 134.7 18.0 193 219-417 124-354 (490)
233 4ao9_A Beta-phenylalanine amin 99.3 2.9E-11 9.9E-16 129.2 19.3 218 214-453 142-383 (454)
234 4atq_A 4-aminobutyrate transam 99.3 1.7E-10 6E-15 123.4 25.1 278 215-530 125-454 (456)
235 4e3q_A Pyruvate transaminase; 99.2 2.1E-09 7.3E-14 115.4 23.4 219 214-453 127-404 (473)
236 4a0g_A Adenosylmethionine-8-am 99.1 6.8E-10 2.3E-14 127.0 16.3 205 276-529 577-822 (831)
237 3ic5_A Putative saccharopine d 56.0 59 0.002 25.7 8.8 90 217-320 7-97 (118)
238 1zco_A 2-dehydro-3-deoxyphosph 48.6 57 0.002 31.4 8.6 67 263-329 129-205 (262)
239 3lyu_A Putative hydrogenase; t 46.0 22 0.00077 30.6 4.8 99 215-321 18-136 (142)
240 3llv_A Exopolyphosphatase-rela 45.2 78 0.0027 26.4 8.1 89 216-316 7-95 (141)
241 1tks_A 3,4-dihydroxy-2-butanon 44.4 25 0.00085 32.7 4.9 36 286-321 159-194 (204)
242 2yxb_A Coenzyme B12-dependent 43.7 28 0.00095 30.9 5.1 67 248-316 30-97 (161)
243 1qyd_A Pinoresinol-lariciresin 41.4 91 0.0031 29.6 9.0 59 261-321 53-113 (313)
244 2g1u_A Hypothetical protein TM 40.8 1.5E+02 0.0053 25.1 9.5 95 215-322 19-117 (155)
245 1xrs_B D-lysine 5,6-aminomutas 40.7 1.7E+02 0.0057 28.2 10.4 123 220-345 101-242 (262)
246 3sho_A Transcriptional regulat 40.4 72 0.0025 28.1 7.5 76 260-346 61-140 (187)
247 2yvq_A Carbamoyl-phosphate syn 40.2 76 0.0026 27.4 7.3 95 218-321 27-130 (143)
248 3i6i_A Putative leucoanthocyan 39.7 65 0.0022 31.5 7.7 104 218-326 13-121 (346)
249 4gqr_A Pancreatic alpha-amylas 38.4 16 0.00055 37.8 3.0 31 295-325 69-99 (496)
250 3tnl_A Shikimate dehydrogenase 37.7 94 0.0032 30.7 8.4 103 215-326 154-265 (315)
251 1qop_A Tryptophan synthase alp 37.7 96 0.0033 29.6 8.3 83 240-324 124-213 (268)
252 3c85_A Putative glutathione-re 37.1 65 0.0022 28.3 6.6 89 215-316 39-130 (183)
253 1lss_A TRK system potassium up 36.2 1.6E+02 0.0055 23.8 8.7 89 217-316 6-94 (140)
254 3vnd_A TSA, tryptophan synthas 34.4 89 0.003 30.1 7.4 60 240-301 125-186 (267)
255 1y80_A Predicted cobalamin bin 34.4 72 0.0025 29.1 6.6 75 248-324 100-179 (210)
256 2r6j_A Eugenol synthase 1; phe 34.1 76 0.0026 30.4 7.0 96 218-321 14-112 (318)
257 1vhx_A Putative holliday junct 33.9 51 0.0017 28.9 5.1 55 274-328 43-103 (150)
258 3gi1_A LBP, laminin-binding pr 31.4 69 0.0024 31.1 6.1 70 238-321 178-256 (286)
259 2zcu_A Uncharacterized oxidore 30.7 1.3E+02 0.0045 27.9 8.0 53 263-317 44-96 (286)
260 1g94_A Alpha-amylase; beta-alp 30.6 23 0.00078 36.7 2.6 31 295-325 57-87 (448)
261 4df3_A Fibrillarin-like rRNA/T 30.2 57 0.0019 30.8 5.1 77 215-294 78-155 (233)
262 1vmd_A MGS, methylglyoxal synt 30.1 83 0.0029 28.5 5.9 88 226-321 40-134 (178)
263 3nvt_A 3-deoxy-D-arabino-heptu 29.9 57 0.002 33.4 5.4 80 260-339 245-341 (385)
264 4h1h_A LMO1638 protein; MCCF-l 29.7 82 0.0028 31.2 6.4 62 235-296 8-88 (327)
265 1b93_A Protein (methylglyoxal 29.6 72 0.0025 28.2 5.3 89 226-322 24-119 (152)
266 3ruf_A WBGU; rossmann fold, UD 29.5 1.6E+02 0.0056 28.3 8.7 73 217-292 27-106 (351)
267 3tla_A MCCF; serine protease, 28.7 1E+02 0.0034 31.3 6.9 62 235-296 39-119 (371)
268 3bh4_A Alpha-amylase; calcium, 28.5 31 0.0011 36.0 3.2 31 295-325 71-101 (483)
269 2xw6_A MGS, methylglyoxal synt 28.4 75 0.0026 27.4 5.1 75 239-321 31-110 (134)
270 4af0_A Inosine-5'-monophosphat 28.2 1E+02 0.0035 33.0 7.0 117 233-352 287-419 (556)
271 3e48_A Putative nucleoside-dip 27.7 1.5E+02 0.0052 27.7 7.9 55 261-317 42-98 (289)
272 2jl1_A Triphenylmethane reduct 27.6 2.2E+02 0.0075 26.4 9.0 53 263-317 45-99 (287)
273 2o1e_A YCDH; alpha-beta protei 27.5 87 0.003 30.8 6.1 69 238-320 189-266 (312)
274 4e5s_A MCCFLIKE protein (BA_56 27.0 99 0.0034 30.8 6.5 62 235-296 8-88 (331)
275 3tsm_A IGPS, indole-3-glycerol 27.0 1.4E+02 0.0047 28.9 7.3 96 241-341 97-193 (272)
276 1wpc_A Glucan 1,4-alpha-maltoh 27.0 34 0.0012 35.7 3.2 30 296-325 76-105 (485)
277 1ud2_A Amylase, alpha-amylase; 26.9 34 0.0012 35.7 3.2 30 296-325 74-103 (480)
278 1mxg_A Alpha amylase; hyperthe 26.4 35 0.0012 35.2 3.2 30 296-325 80-109 (435)
279 1hvx_A Alpha-amylase; hydrolas 26.4 35 0.0012 36.1 3.2 30 296-325 75-104 (515)
280 3nav_A Tryptophan synthase alp 25.7 1.4E+02 0.0049 28.7 7.2 80 240-321 127-213 (271)
281 1g57_A DHBP synthase, 3,4-dihy 25.7 99 0.0034 29.0 5.7 34 287-321 168-201 (217)
282 1req_A Methylmalonyl-COA mutas 25.6 2E+02 0.0068 31.9 9.1 119 223-343 577-705 (727)
283 1iv0_A Hypothetical protein; r 25.6 81 0.0028 25.5 4.6 53 274-326 39-96 (98)
284 1gcy_A Glucan 1,4-alpha-maltot 25.2 39 0.0013 35.9 3.3 29 297-325 87-115 (527)
285 4aie_A Glucan 1,6-alpha-glucos 25.2 33 0.0011 36.1 2.7 30 296-325 73-102 (549)
286 3sr3_A Microcin immunity prote 24.9 1.2E+02 0.0041 30.2 6.7 62 235-296 9-89 (336)
287 3ghf_A Septum site-determining 24.8 1.4E+02 0.0047 25.1 6.0 55 262-320 14-78 (120)
288 1ccw_A Protein (glutamate muta 24.8 60 0.002 27.7 3.8 75 248-324 15-93 (137)
289 1qyc_A Phenylcoumaran benzylic 24.8 1.1E+02 0.0038 28.9 6.3 56 261-321 54-110 (308)
290 3mio_A DHBP synthase, 3,4-dihy 24.7 98 0.0034 28.8 5.4 35 287-321 159-194 (206)
291 1lwj_A 4-alpha-glucanotransfer 24.6 35 0.0012 35.1 2.7 29 297-325 64-92 (441)
292 3kts_A Glycerol uptake operon 24.5 89 0.003 28.7 5.1 81 273-372 17-99 (192)
293 1lu0_A CMTI-I, trypsin inhibit 23.7 18 0.0006 22.7 0.1 15 7-29 2-16 (29)
294 2guy_A Alpha-amylase A; (beta- 23.3 38 0.0013 35.2 2.7 30 296-325 91-120 (478)
295 3ffs_A Inosine-5-monophosphate 23.0 2.2E+02 0.0077 29.0 8.4 89 254-343 174-274 (400)
296 3c1o_A Eugenol synthase; pheny 22.8 1.4E+02 0.0047 28.5 6.5 55 262-321 55-110 (321)
297 1ht6_A AMY1, alpha-amylase iso 22.4 41 0.0014 34.2 2.7 28 298-325 64-91 (405)
298 2yva_A DNAA initiator-associat 22.4 3.9E+02 0.013 23.3 9.7 37 279-320 104-140 (196)
299 1wza_A Alpha-amylase A; hydrol 22.2 42 0.0014 35.0 2.8 27 299-325 78-104 (488)
300 1snn_A DHBP synthase, 3,4-dihy 22.2 1E+02 0.0035 29.1 5.1 35 286-321 178-212 (227)
301 1pq4_A Periplasmic binding pro 22.0 1.4E+02 0.0048 28.9 6.4 70 238-321 189-265 (291)
302 2dh2_A 4F2 cell-surface antige 21.9 44 0.0015 34.4 2.8 30 296-325 75-104 (424)
303 2i2x_B MTAC, methyltransferase 21.7 1.1E+02 0.0037 29.1 5.4 82 240-323 124-211 (258)
304 2gas_A Isoflavone reductase; N 21.6 1.8E+02 0.0063 27.2 7.2 55 262-321 54-109 (307)
305 2aef_A Calcium-gated potassium 21.5 2.4E+02 0.0082 25.6 7.7 93 216-323 10-105 (234)
306 3qvo_A NMRA family protein; st 21.4 2.8E+02 0.0096 25.0 8.2 76 232-316 40-116 (236)
307 2aaa_A Alpha-amylase; glycosid 21.4 43 0.0015 34.9 2.7 31 295-325 90-120 (484)
308 2ya0_A Putative alkaline amylo 21.4 38 0.0013 37.5 2.3 32 295-326 247-278 (714)
309 1jae_A Alpha-amylase; glycosid 21.3 34 0.0012 35.7 1.8 31 295-325 67-97 (471)
310 1mct_I Trypsin inhibitor A; co 21.3 19 0.00065 22.4 -0.1 15 7-29 2-16 (28)
311 1ea9_C Cyclomaltodextrinase; h 21.0 52 0.0018 35.4 3.3 32 295-326 211-242 (583)
312 3dhu_A Alpha-amylase; structur 20.8 44 0.0015 34.4 2.5 27 299-325 80-106 (449)
313 2e8y_A AMYX protein, pullulana 20.4 29 0.001 38.5 1.1 27 300-326 313-339 (718)
314 2hmt_A YUAA protein; RCK, KTN, 20.4 2.5E+02 0.0084 22.7 7.0 89 216-316 7-96 (144)
315 3ujp_A Mn transporter subunit; 20.2 1.5E+02 0.0051 29.1 6.2 53 260-319 204-265 (307)
316 3io5_A Recombination and repai 20.1 5.7E+02 0.019 25.4 10.3 80 238-321 57-167 (333)
No 1
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=100.00 E-value=2.4e-64 Score=538.65 Aligned_cols=375 Identities=32% Similarity=0.488 Sum_probs=297.9
Q ss_pred CCCccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEE
Q 009604 150 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTV 219 (531)
Q Consensus 150 ~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i 219 (531)
|++++|+++|+|...+ ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|++||+.. |.+.++
T Consensus 24 m~~~~t~~~h~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v 101 (430)
T 3ri6_A 24 MRGFTTRALHVPKAKR--DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVL 101 (430)
T ss_dssp -CCHHHHHHCCC----------------------------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred cCCcchhheeCCCCCC--CCCCCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4467999999997543 3478999999999999999998877777666778999999999987 888899
Q ss_pred EeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCC
Q 009604 220 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF 299 (531)
Q Consensus 220 ~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPt 299 (531)
+++||++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++|++++++ +|++|++|+|+||+
T Consensus 102 ~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~-~t~~v~~e~p~Npt 180 (430)
T 3ri6_A 102 ALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDE-TTKLLFLETISNPQ 180 (430)
T ss_dssp EESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTT
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCC
Confidence 99999999999999999999999999999999988776677888999999999999999999988 49999999999999
Q ss_pred CcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEe--ChHH-----------
Q 009604 300 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG--SGKL----------- 366 (531)
Q Consensus 300 G~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~--~~~l----------- 366 (531)
|.+.|+++|+++|+++|++||+|++|+.+..+++..+|+|++++|+||+++|+|++++|+++. +..+
T Consensus 181 G~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~ 260 (430)
T 3ri6_A 181 LQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYA 260 (430)
T ss_dssp CCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHH
T ss_pred CeecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhh
Confidence 999999999999999999999999999998888999999999999999999999999999994 3222
Q ss_pred -------HHHHH-HHhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhh
Q 009604 367 -------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 438 (531)
Q Consensus 367 -------i~~l~-~~~~~~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~ 438 (531)
+.+++ .....+|..++++.+|+++++++++..|++++.+|+++++++|+++|.|.+|.||+++++|+|++++
T Consensus 261 ~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~ 340 (430)
T 3ri6_A 261 KAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAK 340 (430)
T ss_dssp HHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHH
T ss_pred hhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHH
Confidence 23333 2345678889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccc-EEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCH
Q 009604 439 QQMTGFGG-VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF 517 (531)
Q Consensus 439 ~~~~g~g~-ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~ 517 (531)
+|+ |+|+ |++|+++ +.+.+.+|+++|+++++++|+|+++|++++|++++|..++++++.+.|+.+++||||||+|++
T Consensus 341 ~~~-g~Gg~~lsf~l~-~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~ 418 (430)
T 3ri6_A 341 RQF-RYAGSILTFELE-SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEI 418 (430)
T ss_dssp HHC-SSCCSEEEEECS-SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCH
T ss_pred HhC-CCCceEEEEEEC-CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCH
Confidence 999 9999 9999998 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 009604 518 EDLKADVLQALH 529 (531)
Q Consensus 518 edli~dL~~AL~ 529 (531)
+|+++||++||+
T Consensus 419 ~dl~~dl~~al~ 430 (430)
T 3ri6_A 419 EDLKEDILQALC 430 (430)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 999999999984
No 2
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=100.00 E-value=6.6e-62 Score=521.81 Aligned_cols=386 Identities=87% Similarity=1.327 Sum_probs=354.6
Q ss_pred hhhccCCCccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------C
Q 009604 145 NEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------G 214 (531)
Q Consensus 145 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g 214 (531)
++.+|++..+|+++|+|...+....++++.+|||+|+||.|++.++..+.+.+...+|.|+|++||+.. |
T Consensus 49 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g 128 (445)
T 1qgn_A 49 KYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEG 128 (445)
T ss_dssp CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHT
T ss_pred cccccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhC
Confidence 556677655999999997653113479999999999999999998877777666678999999999876 7
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCc-EEEEEe
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNV-SLFFTE 293 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~t-klV~le 293 (531)
.+++++++||++|+.+++.+++++||+||++.+.|++++.++...++..|+++.+++.+|+++|+++++++ | ++|++|
T Consensus 129 ~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~-tv~lV~le 207 (445)
T 1qgn_A 129 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQK-KVNLFFTE 207 (445)
T ss_dssp CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHS-CEEEEEEE
T ss_pred CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccC-CCCEEEEe
Confidence 78999999999999999999999999999999999999887766678889999999999999999999875 8 999999
Q ss_pred CCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHH
Q 009604 294 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL 373 (531)
Q Consensus 294 sP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~ 373 (531)
+|+||+|.+.|+++|.++|+++|++||+|++|+.++...++.+|+|++++|+||+++|++++++|++++++++++.++..
T Consensus 208 ~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~ 287 (445)
T 1qgn_A 208 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL 287 (445)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH
Confidence 99999999999999999999999999999999988777788889999999999999999988899999999999988887
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEc
Q 009604 374 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD 453 (531)
Q Consensus 374 ~~~~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~ 453 (531)
...+|..++++.+|+++++++++..|++++.+++++++++|+++|.+.+|+||+++++|+|+++++++++.|++++|+++
T Consensus 288 ~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~ 367 (445)
T 1qgn_A 288 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 367 (445)
T ss_dssp HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred HHHhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC
Confidence 77788888999999999999999999999999999999999999999899999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 454 GDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 454 g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
++.+.+.+|++.|+++++++|+|++||++.+|+.++|..++.+++..+|+.+++||||+|+|+.++++++|+++|+++
T Consensus 368 ~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 368 GDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI 445 (445)
T ss_dssp SCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence 765678999999999999999999999999999999999999999999999999999999999999999999999865
No 3
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6e-62 Score=517.65 Aligned_cols=374 Identities=33% Similarity=0.539 Sum_probs=349.1
Q ss_pred CccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEe
Q 009604 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIM 221 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~ 221 (531)
+++|+++|+|... +.+++++||||+|+||.|++.+++.+.+.+...+|.|+|++||+.. |.++++++
T Consensus 26 ~~~t~~~~~~~~~---~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~ 102 (414)
T 3ndn_A 26 SQATVGVRGGMLR---SGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFAT 102 (414)
T ss_dssp CHHHHHHHTTCCC---CTTCBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CccceeeecCCCC---CCCCCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEEE
Confidence 5789999999764 2478999999999999999999888877777778999999999876 88999999
Q ss_pred CChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCc
Q 009604 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 301 (531)
Q Consensus 222 sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~ 301 (531)
+||++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++|+++++++ |++|++|+|+||+|.
T Consensus 103 ~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~-t~~v~le~p~NptG~ 181 (414)
T 3ndn_A 103 ASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVP-TQAVFFETPSNPMQS 181 (414)
T ss_dssp SSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSC-CSEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence 9999999999999999999999999999999887766677789999999999999999999884 999999999999999
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeChHHHH-HHHHHhhhcCCC
Q 009604 302 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA 380 (531)
Q Consensus 302 v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~-~l~~~~~~~G~~ 380 (531)
+.|+++|+++|+++|++||+|++|+++....++.+|+|++++|+||+++++|++++|+++++++.+. .++.....+|..
T Consensus 182 ~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~ 261 (414)
T 3ndn_A 182 LVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA 261 (414)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCC
T ss_pred cccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999887777888999999999999999999888999999988776 677667778888
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC----H
Q 009604 381 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----L 456 (531)
Q Consensus 381 ~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~----~ 456 (531)
+++..+|+++++++++..|++++.+|+++++++|+++|.+..|.||+++++|+|++++++++|+|++++|+++++ .
T Consensus 262 ~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~ 341 (414)
T 3ndn_A 262 MSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAK 341 (414)
T ss_dssp CCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred HHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 457 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 457 ~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
+.+.+|+++|+++++++|+|+.+|++++|++++|..++++++.++|+.+++||||||+|+++|+++||++||+
T Consensus 342 ~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al~ 414 (414)
T 3ndn_A 342 QRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRALS 414 (414)
T ss_dssp HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999984
No 4
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=100.00 E-value=2.5e-61 Score=510.76 Aligned_cols=366 Identities=39% Similarity=0.674 Sum_probs=338.9
Q ss_pred CccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEe
Q 009604 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIM 221 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~ 221 (531)
+++|+++|+|...+ ..+++++||||++++|.|++.+ ...+|.|+|++||+.. |.++++++
T Consensus 19 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~--------~~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~~ 88 (400)
T 3nmy_A 19 SLATLAIHGGQSPD--PSTGAVMPPIYATSTYAQSSPG--------EHQGFEYSRTHNPTRFAYERCVAALEGGTRAFAF 88 (400)
T ss_dssp CHHHHHHHTTCCCC--TTTCBSSCCBCCCSBBBCSBTT--------BSSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcchheeeCCCCCC--CCCCCcCCCccccceeeccCcc--------ccCCcccccCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 47899999997653 3488999999999999998753 3467999999999987 78899999
Q ss_pred CChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhh-cccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCC
Q 009604 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 300 (531)
Q Consensus 222 sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~-l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG 300 (531)
+||++|+.+ +..++++||+|+++.+.|++++..+... ++..|+++.+++..|+++|+++++++ +++|++|+|+||+|
T Consensus 89 ~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~e~~~np~G 166 (400)
T 3nmy_A 89 ASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRAD-TKMVWIETPTNPML 166 (400)
T ss_dssp SSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred cCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccC-CCEEEEECCCCCCC
Confidence 999999998 5778999999999999999998887666 77789999999999999999999874 99999999999999
Q ss_pred cccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEE-EEE-eChHHHHHHHHHhhhcC
Q 009604 301 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SIS-GSGKLVTQIRNLHHVLG 378 (531)
Q Consensus 301 ~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG-~iv-~~~~li~~l~~~~~~~G 378 (531)
.+.|+++|+++|+++|++||+|++|++++...++.+|+|++++|+||+++|++++++| +++ .++++++.++.....+|
T Consensus 167 ~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g 246 (400)
T 3nmy_A 167 KLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIG 246 (400)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHC
T ss_pred eeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988777888899999999999999999999999 555 46788888888888889
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHH
Q 009604 379 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 458 (531)
Q Consensus 379 ~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~ 458 (531)
..++++.+|+++++++++..|++++.+|+++++++|+++|.|..|.||+++++|+|++++++++|+|+|++|+++++.+.
T Consensus 247 ~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~ 326 (400)
T 3nmy_A 247 GVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDA 326 (400)
T ss_dssp CBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred CCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876677
Q ss_pred HHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 459 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 459 ~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
+.+|+++|+++++++|+|+++|++++|+.++|..++++++.++|+.+++||||||+|+++|+|+||++||+
T Consensus 327 ~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 327 AKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp HHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999985
No 5
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=100.00 E-value=8e-60 Score=501.52 Aligned_cols=373 Identities=27% Similarity=0.449 Sum_probs=339.0
Q ss_pred CccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhc-cCCCccCCCCCCCCC----------CCCcEEE
Q 009604 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR-RASFEYGRYGNPTTV----------GAESTVI 220 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~-~~~~~Y~R~gnPt~~----------g~e~~i~ 220 (531)
+++|+++|+|...+ ..+++++||||+|+||.|++.+++.+.+.++ ..+|.|+|++||+.. |++++++
T Consensus 25 ~~~t~~~~~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~ 102 (415)
T 2fq6_A 25 KLDTQLVNAGRSKK--YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL 102 (415)
T ss_dssp CHHHHHHHTTCCHH--HHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcCceeEeCCCCCC--CCCCCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Confidence 47899999997542 2478999999999999999999887777655 567999999999976 8889999
Q ss_pred eCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCC
Q 009604 221 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 300 (531)
Q Consensus 221 ~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG 300 (531)
++||++|+.+++.+++++||+||++.++|++++..+...+++.|+++.+++.+|+++|+++|+++ ||+|++|+|+||+|
T Consensus 103 ~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~-tklV~~e~~~NptG 181 (415)
T 2fq6_A 103 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITM 181 (415)
T ss_dssp ESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTT-EEEEEEESSCTTTC
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccC-CcEEEEECCCCCCC
Confidence 99999999999999999999999999999999988877778889999999999999999999884 99999999999999
Q ss_pred cccCHHHHHHHHHh--cCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcC
Q 009604 301 RCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG 378 (531)
Q Consensus 301 ~v~dl~~I~~la~~--~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G 378 (531)
.++|+++|+++|++ +|++||+|++|+.++...++.+|+|++++|+||+++|++++++|+++++++++++++......|
T Consensus 182 ~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G 261 (415)
T 2fq6_A 182 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMG 261 (415)
T ss_dssp CCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTT
T ss_pred EeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcC
Confidence 99999999999999 9999999999998877788889999999999999999999889999999888888887777778
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC--H
Q 009604 379 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--L 456 (531)
Q Consensus 379 ~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~--~ 456 (531)
..+++..+|+++++++++..|++++.+|++.++++|+++|.+.++.||+++++|+|+++++++.+.|++++|++++. .
T Consensus 262 ~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~ 341 (415)
T 2fq6_A 262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNN 341 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCH
T ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCH
Confidence 88899999999999999999999999999999999999999999999999999999999999989999999999873 6
Q ss_pred HHHHHHHHHcCCCCcccccCCccccccc--CccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 457 TATIKFIDALKIPYIAPSFGGCESIVDQ--PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 457 ~~~~~fl~~L~~~~iavS~Gg~~Sli~~--p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
+++.+|++.|+++++++|+|++||++.+ |+.++|.... .++|+.+++||||+|+|+++|+|++|.+||+++
T Consensus 342 ~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~----~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 342 EELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ----GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp HHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTT----CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccch----hhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999998 8777763210 246788899999999999999999999999863
No 6
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=100.00 E-value=1.2e-56 Score=472.85 Aligned_cols=365 Identities=37% Similarity=0.584 Sum_probs=336.8
Q ss_pred CccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEe
Q 009604 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIM 221 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~ 221 (531)
+++|+++|+|..++ ..++++.+|||++++|.|++.+. ...+|.|+|++||+.. |.++++++
T Consensus 17 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~-------~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~~ 87 (392)
T 3qhx_A 17 GLATRAIHSGYRPD--PATGAVNAPIYASSTFAQDGVGG-------LRGGYEYARTGNPTRTALEAALAAVEDAAFGRAF 87 (392)
T ss_dssp CHHHHHHHSSCCCC--TTTCBSSCCBCCCSBBCCSSTTC-------CBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CcchhheeCCCCCC--CCCCCccCCcccCcceEecCccc-------ccCCccccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 47899999997653 34889999999999999987532 2347999999999876 78899999
Q ss_pred CChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCc
Q 009604 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 301 (531)
Q Consensus 222 sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~ 301 (531)
+||++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++.+|+++|++++++ ++++|++++|+||+|.
T Consensus 88 ~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 166 (392)
T 3qhx_A 88 SSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRP-TTRLIWVETPTNPLLS 166 (392)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCcE
Confidence 999999999999999999999999999999988887777888999999999999999999988 4999999999999999
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeC-hHHHHHHHHHhhhcCCC
Q 009604 302 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA 380 (531)
Q Consensus 302 v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~-~~li~~l~~~~~~~G~~ 380 (531)
+.|+++|.++|+++|+++|+|++|+.++...+..+|+|++++|+||++++++++++|+++++ +++.+.++......|..
T Consensus 167 ~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~ 246 (392)
T 3qhx_A 167 IADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAV 246 (392)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCC
T ss_pred EecHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999998888888899999999999999999998889999987 58888888888888889
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHH
Q 009604 381 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI 460 (531)
Q Consensus 381 ~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~ 460 (531)
.+++.+++++++++++..|++++.+++++++++|+++|.+..|.||+++++|+|++++++++|.|++++|+++++.+.++
T Consensus 247 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~ 326 (392)
T 3qhx_A 247 PGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAE 326 (392)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHH
T ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987667889
Q ss_pred HHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 461 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 461 ~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
+|++.|+++++++|+|+.++++++|..++|..++.+ .+|+.+++||||||+|+++|+|++|.++|+
T Consensus 327 ~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg~e~~~~~i~~l~~al~ 392 (392)
T 3qhx_A 327 QLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLDDLKQALG 392 (392)
T ss_dssp HHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred HHHHhCCCceECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999887765 789999999999999999999999999984
No 7
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=100.00 E-value=1.6e-55 Score=463.42 Aligned_cols=374 Identities=35% Similarity=0.565 Sum_probs=343.8
Q ss_pred CccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEe
Q 009604 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIM 221 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~ 221 (531)
+++|+++|+| .. ..+++++||||+++||.|++.+++.+.+.+...+|.|+|+++|+.. |.++++++
T Consensus 5 ~~~t~~~~~~-~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~ 80 (389)
T 3acz_A 5 DITTTLLHPK-GD---HVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAF 80 (389)
T ss_dssp CHHHHHHSCS-SC---CSTTBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcceeEEecC-CC---CCCCCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence 4679999998 32 2478999999999999999998888877666678999999999866 77899999
Q ss_pred CChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCc
Q 009604 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 301 (531)
Q Consensus 222 sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~ 301 (531)
+||++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++|+++++++ +++|++|+|+||+|.
T Consensus 81 ~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~ 159 (389)
T 3acz_A 81 GSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN-TKMVYLESPANPTCK 159 (389)
T ss_dssp SSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTT-EEEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCCe
Confidence 9999999999999999999999999999998877766677789999999999999999999874 999999999999999
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeCh-HHHHHHHHHhhhcCCC
Q 009604 302 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA 380 (531)
Q Consensus 302 v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~-~li~~l~~~~~~~G~~ 380 (531)
+.|+++|.++|+++|+++|+|++|+.++...++.+++|++++|+||++++++++++|++++++ ++++.++.....+|..
T Consensus 160 ~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~ 239 (389)
T 3acz_A 160 VSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSL 239 (389)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred ecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999988766777889999999999999999988789999998 8999888777767888
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHH
Q 009604 381 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI 460 (531)
Q Consensus 381 ~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~ 460 (531)
.++..+++++++++++..|++++.++++.++++|++++.+..+.||+++++|+++++++++++.|++++|++++ .+...
T Consensus 240 ~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-~~~~~ 318 (389)
T 3acz_A 240 MAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-FEAAK 318 (389)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-HHHHH
T ss_pred CCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-HHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999986 67788
Q ss_pred HHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 461 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 461 ~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
+|++.++++.+++|+|+.+|++++|+.++|..++++++..+|+++++||||+|+|++++++++|.++|+++
T Consensus 319 ~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~~~ 389 (389)
T 3acz_A 319 KLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALELW 389 (389)
T ss_dssp HHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999764
No 8
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=100.00 E-value=5.6e-55 Score=462.09 Aligned_cols=367 Identities=37% Similarity=0.612 Sum_probs=325.1
Q ss_pred CccccccccCCcCCCCCCC-CcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEE
Q 009604 152 SDGSLAIHAGERLGRGIVT-DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVI 220 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~-~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~ 220 (531)
+++|+++|+|...+. .+ +++++|||+++||.|++..+ ..+|.|+|++||+.. |.+++++
T Consensus 18 ~~~t~~~h~g~~~~~--~~~~~~~~pi~~stt~~~~~~~~--------~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~ 87 (403)
T 3cog_A 18 HFATQAIHVGQDPEQ--WTSRAVVPPISLSTTFKQGAPGQ--------HSGFEYSRSGNPTRNCLEKAVAALDGAKYCLA 87 (403)
T ss_dssp THHHHHHHTTCCGGG--STTCBSSCCBCCCSCBCCC----------------------CHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcccEEEeCCCCCCc--CCCCCccCCeeccceeecCCccc--------cCCCcccCCCCchHHHHHHHHHHHhCCCcEEE
Confidence 467999999976432 36 89999999999999987532 235889999999865 7779999
Q ss_pred eCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCC
Q 009604 221 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 300 (531)
Q Consensus 221 ~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG 300 (531)
++||++|+.+++. ++++||+|+++.+.|++++..+...++..|+++.+++..|+++|++++++ +|++|++++|+||+|
T Consensus 88 ~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~-~t~~v~~~~p~nptG 165 (403)
T 3cog_A 88 FASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITP-ETKLVWIETPTNPTQ 165 (403)
T ss_dssp ESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred ECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCC
Confidence 9999999999999 99999999999999999888776677888999999998899999999987 499999999999999
Q ss_pred cccCHHHHHHHHHhcC-CEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeC-hHHHHHHHHHhhhcC
Q 009604 301 RCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG 378 (531)
Q Consensus 301 ~v~dl~~I~~la~~~g-i~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~-~~li~~l~~~~~~~G 378 (531)
.+.|+++|+++|+++| ++||+|++|+.+....++.+|+|++++|+||+++|++++++|+++++ +++++.++.....+|
T Consensus 166 ~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g 245 (403)
T 3cog_A 166 KVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG 245 (403)
T ss_dssp CCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_pred eeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcC
Confidence 9999999999999999 99999999998876677788999999999999999998778999985 788888888777788
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHH
Q 009604 379 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 458 (531)
Q Consensus 379 ~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~ 458 (531)
...+++.+++++++++++..|++++.+|+..++++|++++.|.++.||+|+++|+++++++++.+.|++++|.+++..+.
T Consensus 246 ~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~ 325 (403)
T 3cog_A 246 AVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQH 325 (403)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHH
T ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999876677
Q ss_pred HHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 459 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 459 ~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
..+|++.++++.+++|+|+++|++++|+.++|..++.+++..+|+.+++||||+|+|+++|+|++|.++|++
T Consensus 326 ~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 326 AEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA 397 (403)
T ss_dssp HHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999999999975
No 9
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=1.6e-53 Score=453.12 Aligned_cols=374 Identities=30% Similarity=0.445 Sum_probs=331.5
Q ss_pred ccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEeC
Q 009604 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIMA 222 (531)
Q Consensus 153 ~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~s 222 (531)
++|+++|+|...+ ..++++++|||+|+||.|++.++..+.+.....+|.|+|+++|+.. |.+++++++
T Consensus 3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~ 80 (421)
T 2ctz_A 3 FETLQLHAGYEPE--PTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATA 80 (421)
T ss_dssp HHHHHHHTTCCCC--TTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred cceeeeeCCCCCC--cCCCCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEec
Confidence 5799999997543 2478999999999999999998877666555567999999998765 778899999
Q ss_pred ChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEe-CCCCHHHHHHhccCCCcEEEEEeCCCCCCCc
Q 009604 223 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI-DPADMEGLEAALNNNNVSLFFTESPTNPFLR 301 (531)
Q Consensus 223 SG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~v-d~~d~e~Le~al~~~~tklV~lesP~NPtG~ 301 (531)
||++|+.+++.+++++||+|+++.+.|+++...+...++..|+++.++ +.+|+++|++++++ +|++|++++|+||+|.
T Consensus 81 sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~n~~G~ 159 (421)
T 2ctz_A 81 SGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPALN 159 (421)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhcc-CCeEEEEECCCCCCCc
Confidence 999999999999999999999999999998877655567789999999 98899999999988 4999999999999999
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCC-CCCccccccccCCcEEEECCccccccCCCceEEEEEeC--hHH----HHHHH---
Q 009604 302 CVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS--GKL----VTQIR--- 371 (531)
Q Consensus 302 v~dl~~I~~la~~~gi~lIvD~a~-a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~--~~l----i~~l~--- 371 (531)
+.|+++|.++|+++|+++|+|++| +.++..+++..++|++++|+||+++++++.+||+++.+ .++ .+.+.
T Consensus 160 ~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~ 239 (421)
T 2ctz_A 160 IPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQ 239 (421)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCB
T ss_pred ccCHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhcccc
Confidence 999999999999999999999999 87766677788999999999999999988888988873 222 11221
Q ss_pred ----------------------H-HhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCC
Q 009604 372 ----------------------N-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 428 (531)
Q Consensus 372 ----------------------~-~~~~~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl 428 (531)
. ....+|..+++..+|+++++++++..|++++.++++++.++|+++|+|..+.||++
T Consensus 240 ~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~ 319 (421)
T 2ctz_A 240 PGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGL 319 (421)
T ss_dssp GGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTS
T ss_pred chhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCC
Confidence 0 12346778899999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009604 429 KSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL 507 (531)
Q Consensus 429 ~s~p~~~l~~~~~-~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~l 507 (531)
+++|+|+++++++ ++.|++++|++++..+.+.+|+++++++++++++|+.++++.+|+.++|..++++++..+|+.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~ 399 (421)
T 2ctz_A 320 PHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEM 399 (421)
T ss_dssp TTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTE
T ss_pred CCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCe
Confidence 9999999999999 799999999998644678899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCHHHHHHHHHHHHH
Q 009604 508 VRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 508 IRlSvGlE~~edli~dL~~AL~ 529 (531)
||||+|+|++++++++|++||+
T Consensus 400 vRlS~g~e~~~~li~~l~~al~ 421 (421)
T 2ctz_A 400 VRLSVGLEHVEDLKAELKEALA 421 (421)
T ss_dssp EEEECCSSCHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999974
No 10
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=1.1e-52 Score=442.98 Aligned_cols=366 Identities=34% Similarity=0.589 Sum_probs=328.4
Q ss_pred CccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEe
Q 009604 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIM 221 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~ 221 (531)
+++|+++|.|...+ .+++++||||+++||.|++.+ .....|.|+|+.+|... |.++++++
T Consensus 7 ~~~t~~~~~~~~~~---~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~ 76 (393)
T 1n8p_A 7 KFATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPA-------NPIGTYEYSRSQNPNRENLERAVAALENAQYGLAF 76 (393)
T ss_dssp CHHHHHHHTTCCCC---SSCCSSCCBCCCSBCCBSSSS-------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceEEecCCCcc---CCCCcCCCcccccceeecccc-------ccccCcceecCCChhHHHHHHHHHHHhCCCcEEEE
Confidence 46799999997542 479999999999999998642 12257899999998755 77899999
Q ss_pred CChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCc
Q 009604 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 301 (531)
Q Consensus 222 sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~ 301 (531)
+||++|+.+++. ++++||+|+++.+.|++++..+...++..|+++.+++.+| ++|++++++ +|++|++++|+||+|.
T Consensus 77 ~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~-~t~lv~~~~~~nptG~ 153 (393)
T 1n8p_A 77 SSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKE-NTKLVWIETPTNPTLK 153 (393)
T ss_dssp SCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCS-SEEEEEECSSCTTTCC
T ss_pred CChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhccc-CceEEEEECCCCCcce
Confidence 999999999999 9999999999999999888777667788899999999878 999999987 4999999999999999
Q ss_pred ccCHHHHHHHHHhc----CCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeC-hHHHHHHHHHhhh
Q 009604 302 CVDVKLVSDLCHKK----GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV 376 (531)
Q Consensus 302 v~dl~~I~~la~~~----gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~-~~li~~l~~~~~~ 376 (531)
++|+++|.++|+++ |+++|+|++|+.+...++..+|+|++++|+||+++++|++++|+++++ +++++.++.....
T Consensus 154 ~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~ 233 (393)
T 1n8p_A 154 VTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA 233 (393)
T ss_dssp CCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999 999999999987655567778999999999999999998888999985 7888888877777
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ceEEeCCCCCCCchhhhhhhhcCC-c-ccEEEEEEc
Q 009604 377 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIATQQMTG-F-GGVVSFEVD 453 (531)
Q Consensus 377 ~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~-v~~V~~pgl~s~p~~~l~~~~~~g-~-g~ivsf~l~ 453 (531)
+|..+++..++++.++++++..+++++.++++.+.++|++++. +..+.+|++.++|+++++.+++.+ . |++++|+++
T Consensus 234 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~ 313 (393)
T 1n8p_A 234 IGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK 313 (393)
T ss_dssp HCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES
T ss_pred cCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeC
Confidence 7888889889988889999999999999999999999999988 888999999999999999998877 7 999999998
Q ss_pred CCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 454 GDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 454 g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
+..++.++|++.|+++++++|+|++||++.+|+.++|..++.+++..+|+.+++||||+|+|+++++|++|.++|++
T Consensus 314 ~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~ 390 (393)
T 1n8p_A 314 GGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp SCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 76568899999999999999999999999999999999888888889999999999999999999999999999975
No 11
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=100.00 E-value=7.8e-52 Score=436.08 Aligned_cols=376 Identities=37% Similarity=0.568 Sum_probs=307.6
Q ss_pred CccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEe
Q 009604 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIM 221 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~ 221 (531)
+++|+++|+|...+ ..++++.+|+|+++||.++...+....+.+...+|.|+|+++|... |.++++++
T Consensus 9 ~~~t~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~~ 86 (398)
T 1gc0_A 9 GFATRAIHHGYDPQ--DHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86 (398)
T ss_dssp CHHHHHHHTTCCGG--GGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcCceeEeCCCCCC--CCCCCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 46799999997542 2478999999999999999877665544444567999999999776 77899999
Q ss_pred CChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCc
Q 009604 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 301 (531)
Q Consensus 222 sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~ 301 (531)
+||++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++|++++++ ++++|++++|+||+|.
T Consensus 87 ~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 165 (398)
T 1gc0_A 87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPNMH 165 (398)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCcc
Confidence 999999999999999999999999999999887776556778999999999999999999987 4999999999999999
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeChHHHH-HHHHHhhh-cCC
Q 009604 302 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHV-LGG 379 (531)
Q Consensus 302 v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~-~l~~~~~~-~G~ 379 (531)
+.|+++|.++|+++|+++|+|++|+.+....++..++|++++|+||++++++++++|+++++++.++ .++..... +|.
T Consensus 166 ~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~ 245 (398)
T 1gc0_A 166 MADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGA 245 (398)
T ss_dssp CCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCC
T ss_pred cccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999998776556677899999999999999999888899999987765 56655555 677
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHH
Q 009604 380 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 459 (531)
Q Consensus 380 ~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~ 459 (531)
..++..+++++++++++..+++++.++++.+.++|++++.+..+.||+++++|+++++++++.+.|++++|++++..+.+
T Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (398)
T 1gc0_A 246 VLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG 325 (398)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHH
T ss_pred CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHH
Confidence 88999999989999999999999999999999999999999999999999999999999988889999999998644678
Q ss_pred HHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 460 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 460 ~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.++++.++++.+++|+|+++|++++|..++|..++.+++..+|+.+++||||+|+|+++++|++|.++|++
T Consensus 326 ~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp HHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999975
No 12
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=100.00 E-value=4.1e-50 Score=424.62 Aligned_cols=375 Identities=33% Similarity=0.576 Sum_probs=334.5
Q ss_pred CccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEe
Q 009604 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIM 221 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~ 221 (531)
+++|+++|+|.. + ..++++.+|+|+++++.++...+..+.+.+....|.|+|.|+|+.. |.++++++
T Consensus 7 ~~~t~~~~~~~~-~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~ 83 (404)
T 1e5e_A 7 TPATACIHANPQ-K--DQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT 83 (404)
T ss_dssp CHHHHHHHSSCC-C--CTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CccceeeecCCC-C--CCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEe
Confidence 367999999865 2 2368999999999999999987766555455567999999998544 77899999
Q ss_pred CChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCc
Q 009604 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 301 (531)
Q Consensus 222 sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~ 301 (531)
++|++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++|++++++ +|++|++++|+||+|.
T Consensus 84 ~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~t~~v~l~~p~NptG~ 162 (404)
T 1e5e_A 84 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKP-NTKIVYFETPANPTLK 162 (404)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred CChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-CCcEEEEECCCCCCCc
Confidence 999999999999999999999999999999887665566778999999998899999999987 4999999999999999
Q ss_pred ccCHHHHHHHHHh-cCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeChHHHH-HHHHHhhhc-C
Q 009604 302 CVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-G 378 (531)
Q Consensus 302 v~dl~~I~~la~~-~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~-~l~~~~~~~-G 378 (531)
+.|+++|.++|++ +|++||+|++|+.+....++.+|+|++++|+||++++++++++|++++++++++ .++.....+ |
T Consensus 163 v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g 242 (404)
T 1e5e_A 163 IIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITG 242 (404)
T ss_dssp CCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCC
T ss_pred ccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCC
Confidence 9999999999999 999999999999876556677899999999999999999877799999998887 777766555 7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHH
Q 009604 379 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 458 (531)
Q Consensus 379 ~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~ 458 (531)
...+++.++++.++++++..|++++.++++.+.++|++++.+..+.+|++.++|++++++.++++.|++++|++++..+.
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 322 (404)
T 1e5e_A 243 SVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEG 322 (404)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred CCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHH
Confidence 77889999999999999999999999999999999999999989999999999999999999889999999999754356
Q ss_pred HHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 459 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 459 ~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
..++++.++++..++++|+.+|++++|+.++|..++.+++...|+++++||||+|+|+.++++++|+++++.
T Consensus 323 ~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 323 AKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDA 394 (404)
T ss_dssp HHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 788999999888999999999999999999999999999999999889999999999999999999999874
No 13
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=100.00 E-value=8.8e-50 Score=422.54 Aligned_cols=371 Identities=32% Similarity=0.497 Sum_probs=329.5
Q ss_pred ccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEeC
Q 009604 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIMA 222 (531)
Q Consensus 153 ~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~s 222 (531)
++|+++|+|...+ .+++++||||++++|.|++.+.+.+... ...+|.|+|.++|... |.+++++++
T Consensus 3 ~~t~~~~~~~~~~---~~~~~~~pi~~s~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~ 78 (412)
T 2cb1_A 3 YTTLAVLAGLPED---PHGAVGLPIYAVAAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEGALEAVVLA 78 (412)
T ss_dssp HHHHHHHTTCCCC---TTCCSSCCCCCCSBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred ccceeeecCCCcC---CCCCcCCCccccceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence 5789999997542 4789999999999999999998877655 4567999999888765 788999999
Q ss_pred ChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCcc
Q 009604 223 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 302 (531)
Q Consensus 223 SG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~v 302 (531)
||++|+.+++.+++++||+|+++.+.|.+++..+...++..|+++.+++.+ +++|++++++ ++++|++++|+||+|.+
T Consensus 79 ~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~i~~-~~~~v~~~~~~n~~G~~ 156 (412)
T 2cb1_A 79 SGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEAVREALSA-KTRAVFVETVANPALLV 156 (412)
T ss_dssp SHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHHHHHHCCT-TEEEEEEESSCTTTCCC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHHHHHHhcc-CCeEEEEeCCCCCCccc
Confidence 999999999999999999999999999988877765677889999999864 9999999987 49999999999999999
Q ss_pred cCHHHHHHHHHhcCCEEEEeCCCCCC-ccccccccCCcEEEECCccccccCCCceEEEEEeCh-----------------
Q 009604 303 VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG----------------- 364 (531)
Q Consensus 303 ~dl~~I~~la~~~gi~lIvD~a~a~~-~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~----------------- 364 (531)
.|+++|.++|+++|+++|+|++|+.+ ....+...++|++++|+||+++++++.+||+++.++
T Consensus 157 ~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 236 (412)
T 2cb1_A 157 PDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG 236 (412)
T ss_dssp CCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC----
T ss_pred ccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccc
Confidence 99999999999999999999999887 666777789999999999999998887788888773
Q ss_pred ----------HHHHHHHHHh-hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCch
Q 009604 365 ----------KLVTQIRNLH-HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE 433 (531)
Q Consensus 365 ----------~li~~l~~~~-~~~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~ 433 (531)
++.+.++... ...|..+.+..+++++.+++.+..++++..++++++.++|.++++|..+++|++.++|+
T Consensus 237 ~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~ 316 (412)
T 2cb1_A 237 QIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPA 316 (412)
T ss_dssp ---HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTT
T ss_pred cchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcc
Confidence 3445555543 44566778899999888999999999999999999999999999998899999999999
Q ss_pred hhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec
Q 009604 434 HHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG 513 (531)
Q Consensus 434 ~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvG 513 (531)
|+++++++.+.+++++|++ ++.+...++++.++++. +.|+|+.+|++++|+..+|..++++++.++|+.++.||||+|
T Consensus 317 ~~~~~~~~~~~~~iv~~~~-~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g 394 (412)
T 2cb1_A 317 HRNARKYLASGGPILTLDL-GDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVG 394 (412)
T ss_dssp HHHHHHHCSSSCSEEEEEC-SSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECC
T ss_pred HHHHHHhCCCCceEEEEEe-CCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEec
Confidence 9999999999999999999 66678899999999888 999999999999999999988999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhC
Q 009604 514 VEDFEDLKADVLQALHAI 531 (531)
Q Consensus 514 lE~~edli~dL~~AL~~i 531 (531)
+|+++++|++|.++|+++
T Consensus 395 ~~~~~~~i~~l~~al~~~ 412 (412)
T 2cb1_A 395 LEDPLDLLALFEEALEAV 412 (412)
T ss_dssp SSCHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 999999999999999863
No 14
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=100.00 E-value=1.1e-46 Score=396.25 Aligned_cols=376 Identities=37% Similarity=0.637 Sum_probs=329.1
Q ss_pred CccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEe
Q 009604 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIM 221 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~ 221 (531)
++.|+++|+|...+ ....++.+|++.++++.++...+..+.+.+....|.|+|+.+|... |.++++++
T Consensus 8 ~~~t~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~ 85 (398)
T 2rfv_A 8 GFNTQIVHAGQQPD--PSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT 85 (398)
T ss_dssp CHHHHHHHTTCCCC--TTTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCceeEeecCCcCc--cCCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 46799999996542 2368899999999999999887665543344567899998887665 77899999
Q ss_pred CChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCc
Q 009604 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 301 (531)
Q Consensus 222 sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~ 301 (531)
++|++|+.+++.+++++||+|+++.+.|+++...+...++..|+++.+++..|+++|++++++ ++++|++++|+||+|.
T Consensus 86 ~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 164 (398)
T 2rfv_A 86 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRP-ETKVVYIETPANPTLS 164 (398)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSBTTTTB
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCc
Confidence 999999999999999999999999999999887665555777999999999999999999987 4999999999999999
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeChHHHH-HHHHHhhhc-CC
Q 009604 302 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-GG 379 (531)
Q Consensus 302 v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~-~l~~~~~~~-G~ 379 (531)
+.|+++|.++|+++|+++|+|++|+.+....++.+++|+++.|+||++++++++++|++++++++++ .++.....+ |.
T Consensus 165 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 244 (398)
T 2rfv_A 165 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG 244 (398)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999998776656677899999999999999988777799999998877 666666666 77
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHH
Q 009604 380 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 459 (531)
Q Consensus 380 ~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~ 459 (531)
..++..++.+.++++.+..++++..++++.+.++|++++.+..+.+|++..+|++++...++.+.|++++|++++..+..
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~ 324 (398)
T 2rfv_A 245 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAG 324 (398)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHH
T ss_pred CCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHH
Confidence 78888888888899999999999999999999999999999999999999999999998887888999999997544567
Q ss_pred HHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 460 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 460 ~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.+|++.++..++++++|+.++++++|...+|..++.+++..+|+.++.||||+|.+++++++++|.++|++
T Consensus 325 ~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 325 RRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 88999998889999999999999999888888888888889999899999999999999999999999975
No 15
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=4.8e-45 Score=381.95 Aligned_cols=368 Identities=33% Similarity=0.550 Sum_probs=317.5
Q ss_pred CccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEe
Q 009604 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIM 221 (531)
Q Consensus 152 ~~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~ 221 (531)
+++|+++|.|...+ +.++++.||||++++|.|++.. ...+|.|+|+.+|... +.++.+++
T Consensus 4 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~ 73 (386)
T 1cs1_A 4 KQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFN--------EPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLT 73 (386)
T ss_dssp CHHHHHHHTTTTCC--TTTCBSSCCBCCCSBBCCSBTT--------BCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcceeEEecCCCcc--ccCCCCCCCccccceeeccccC--------CCCCcceeCCCCccHHHHHHHHHHHhCCCcEEEe
Confidence 35799999987532 3478999999999999997542 2357899999988655 67789999
Q ss_pred CChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCc
Q 009604 222 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 301 (531)
Q Consensus 222 sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~ 301 (531)
++|++|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++|++++++ ++++|++++|+||+|.
T Consensus 74 ~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 152 (386)
T 1cs1_A 74 NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLR 152 (386)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHT-CCSEEEEECSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcc-CCcEEEEeCCCCCCCc
Confidence 999999999999999999999999999999887665566778999999998899999999987 4999999999999999
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeCh-HHHHHHHHHhhhcCCC
Q 009604 302 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA 380 (531)
Q Consensus 302 v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~-~li~~l~~~~~~~G~~ 380 (531)
+.|+++|.++|+++|+++|+|++|+.+....+...++|+++.|++|++++++.+++|++++++ ++++.++.....++..
T Consensus 153 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~ 232 (386)
T 1cs1_A 153 VVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVT 232 (386)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCB
T ss_pred ccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999877655566788999999999999988877679998876 7888888776666767
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHH
Q 009604 381 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI 460 (531)
Q Consensus 381 ~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~ 460 (531)
.++..++.+.++++.+..++++..++++.+.++|++++.+..+.+|++.+.|+++++..++++.|++++|++++..+...
T Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (386)
T 1cs1_A 233 GGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLR 312 (386)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHH
Confidence 78888888888888888889999999999999999999998888999999999999988888899999999976544555
Q ss_pred HHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 461 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 461 ~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
++++...++..+.++|+.+|++++|..+.|...+.+.+..+|+.++.||||+|++++++++++|.++|++
T Consensus 313 ~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 313 RFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_dssp HHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 6665555544445589999999999988888888888888999889999999999999999999999975
No 16
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=100.00 E-value=3.4e-45 Score=394.30 Aligned_cols=364 Identities=33% Similarity=0.588 Sum_probs=317.9
Q ss_pred ccccccccCCcCCCCCCCCcccCCcccCCCcccCCHHHHHHHHhhccCCCccCCCCCCCCC----------CCCcEEEeC
Q 009604 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV----------GAESTVIMA 222 (531)
Q Consensus 153 ~~t~~~~~~~~~~~~~~~~~~~~Pi~~sst~~f~~~~~~~~~~~~~~~~~~Y~R~gnPt~~----------g~e~~i~~s 222 (531)
+.|.++|.+...+ ..+++.+||+.++++.++... ..+.|.|+|+|+|... |.+++++++
T Consensus 87 ~~~~~i~l~~g~~---~~~~~~~~i~~a~~~~~~~~~--------~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~ 155 (464)
T 1ibj_A 87 VSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFT 155 (464)
T ss_dssp HHHHHTCCCCSSC---TTCCSSCCCCCCSBCCCSSSS--------CCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred cCCeEEECCCCCC---CCCCCCccHHhhhhhhhhccc--------ccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 5677888875311 257889999999998766431 2346889999999654 788999999
Q ss_pred ChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCcc
Q 009604 223 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 302 (531)
Q Consensus 223 SG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~v 302 (531)
+|++|+.+++. ++++||+|+++.+.|+++...+...++..|+++.+++..|+++|++++++ ++++|++++|+||+|.+
T Consensus 156 sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~-~tk~v~l~~p~NptG~v 233 (464)
T 1ibj_A 156 SGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQI 233 (464)
T ss_dssp SHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCS-SEEEEEECSSCTTTCCC
T ss_pred CHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhcc-CceEEEEeCCCCCCCEe
Confidence 99999988875 88999999999999999877665567788999999999999999999987 49999999999999999
Q ss_pred cCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeCh-HHHHHHHHHhhhcCCCc
Q 009604 303 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGAL 381 (531)
Q Consensus 303 ~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~-~li~~l~~~~~~~G~~~ 381 (531)
.|+++|+++|+++|++||+|++|..+....++.+|+|++++|+||++++++++++|++++++ ++++.++......|..+
T Consensus 234 ~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~ 313 (464)
T 1ibj_A 234 SDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGL 313 (464)
T ss_dssp CCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBC
T ss_pred ecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999887665677789999999999999998777789999885 78888887776677778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHH
Q 009604 382 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK 461 (531)
Q Consensus 382 s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~ 461 (531)
+++.+++++++++++..|+++..+++..++++|++++.+..+.+++|..+|+++++..+.+++|++++|+++ +.+...+
T Consensus 314 ~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-~~~~~~~ 392 (464)
T 1ibj_A 314 APFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-SVALSKH 392 (464)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-CHHHHHH
T ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC-CHHHHHH
Confidence 899999989999999999999999999999999999999999999999999999998888889999999995 3445667
Q ss_pred HHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 462 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 462 fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
|++.|+..++++++|+.++++++|..++|...+.+++..+|+.+++||||+|+|+.++++++|+++|++
T Consensus 393 ~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 393 LVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKT 461 (464)
T ss_dssp HHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHS
T ss_pred HHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999888887777667777888889999999999999999999999975
No 17
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=100.00 E-value=3.2e-39 Score=329.60 Aligned_cols=315 Identities=36% Similarity=0.592 Sum_probs=276.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 294 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~les 294 (531)
.++.++++||++|+.+++.+++++||+|+++.+.|.++...+...++..|+++.+++..|+++|++++++ ++++|++++
T Consensus 13 ~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 91 (331)
T 1pff_A 13 AEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKP-NTRIVYFET 91 (331)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCCT-TEEEEEEES
T ss_pred CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcC-CCeEEEEEC
Confidence 3578999999999999999999999999999999999876665445667999999998899999999987 499999999
Q ss_pred CCCCCCcccCHHHHHHHHHh-cCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeCh-HHHHHHHH
Q 009604 295 PTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRN 372 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~-~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~-~li~~l~~ 372 (531)
|+||+|.+.|+++|.++|++ +|+++|+|++|+.+....+...++|+++.|+||++++++++++|++++++ ++++.++.
T Consensus 92 ~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~ 171 (331)
T 1pff_A 92 PANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ 171 (331)
T ss_dssp SCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT
T ss_pred CCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHH
Confidence 99999999999999999999 99999999999876544455778999999999999998876689999998 88888887
Q ss_pred Hhhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEE
Q 009604 373 LHHV-LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 451 (531)
Q Consensus 373 ~~~~-~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~ 451 (531)
.... .|...++..++.+..+++.+..++++..++.+.+.++|++++.+..+.++++.+.|+++++..+..+.+++++|.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (331)
T 1pff_A 172 GIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFD 251 (331)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred HHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 6655 566778888888888899888899999999999999999998888889999998888888888777889999999
Q ss_pred EcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 452 VDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 452 l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
++ +.+...++++...++..++|+|+.+|++.+|+...|...+.+.+..+|++++.||||+|.+++++++++|.++|+++
T Consensus 252 ~~-~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 252 VD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred EC-CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 97 44566777777666656889999999999998888888888888889998899999999999999999999999863
No 18
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=100.00 E-value=5.3e-33 Score=295.98 Aligned_cols=301 Identities=19% Similarity=0.254 Sum_probs=242.3
Q ss_pred CCCcEEE---eCChHHHHHHHHHHhccCCCEEEEcC-CCccchHHHH-------HhhcccCCcEEEEeCC-----CCHHH
Q 009604 214 GAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFI-------ETVLPKMGITATVIDP-----ADMEG 277 (531)
Q Consensus 214 g~e~~i~---~sSG~~Ai~~al~all~pGD~VIv~~-~~y~~t~~~~-------~~~l~~~Gi~v~~vd~-----~d~e~ 277 (531)
|.+.+++ ++||++|+.+++.++++|||+|+++. +.|.+++.++ ...++..|+++.+++. .|+++
T Consensus 87 g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~ 166 (427)
T 3i16_A 87 NTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEE 166 (427)
T ss_dssp TCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHH
T ss_pred CCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHH
Confidence 7788888 89999999999999999999999998 9999887665 1456677999999987 58999
Q ss_pred HHHhcc--CCCcEEEEEeC----CCCCCCcccCHHHHHHHHHh--cCCEEEEeCCCCCCc-cccccccCCcEEEECCccc
Q 009604 278 LEAALN--NNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPL-NQKALSLGADLVLHSATKF 348 (531)
Q Consensus 278 Le~al~--~~~tklV~les----P~NPtG~v~dl~~I~~la~~--~gi~lIvD~a~a~~~-~~~~l~~gaDivv~S~sK~ 348 (531)
|+++++ + +||+|++++ |+||+|.+.|+++|+++|++ +|+++++|++|+.+. ...+..+|+|++++|+||+
T Consensus 167 l~~~l~~~~-~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~ 245 (427)
T 3i16_A 167 IEKVLKEDE-SITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKN 245 (427)
T ss_dssp HHHHHHTCT-TEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSG
T ss_pred HHHHhhCCC-CCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCccc
Confidence 999998 5 599999999 99999999999999999999 999999999999887 6778888999999999999
Q ss_pred cccCCCceEEEEEeChHHHHHHHHH--hhhcCCCchH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEe
Q 009604 349 IGGHNDVLAGSISGSGKLVTQIRNL--HHVLGGALNP-NA-AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVH 424 (531)
Q Consensus 349 lgg~g~v~gG~iv~~~~li~~l~~~--~~~~G~~~s~-~~-a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~ 424 (531)
++|+++.+||+++++++++++++.. ....|..+++ +. +++++++++++..|++++.+|+..++++|++++. .|
T Consensus 246 lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g~--~V- 322 (427)
T 3i16_A 246 IGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISMEALKGAILCSRIMELAGF--EV- 322 (427)
T ss_dssp GGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-
T ss_pred CCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ee-
Confidence 9999988899999999999998873 3334444444 44 7889999999999999999999999999999976 66
Q ss_pred CCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCC--------ccc-ccccCccccccCCCH
Q 009604 425 YPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGG--------CES-IVDQPAIMSYWDLSQ 495 (531)
Q Consensus 425 ~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg--------~~S-li~~p~~~s~~~~~~ 495 (531)
||+ +++|.|++ +++|.++ +.+.+.+|++.|+.+....|+-. ++. ++....+ .-..-+-
T Consensus 323 ~p~-~~~~~~~~----------i~~i~l~-~~~~~~~f~~~l~~~~~~~s~~~p~~~~~~gy~~~~~~~~~~-~~~~~~~ 389 (427)
T 3i16_A 323 MPK-YDEKRSDI----------IQSIKFN-DKDKLIEFCKGIQTGSPIDSFVSCEPWDMPGYTDQVIMAAGA-FIQGSSI 389 (427)
T ss_dssp ESC-TTSCCSSS----------CEEEECS-SHHHHHHHHHHHHHTCSSSTTSCCCCBCC---CCCEEEEECC-SSTTCSS
T ss_pred cCC-CCCCCccE----------EEEEEEC-CHHHHHHHHHHHhhcCcccccccCcCCCCCCCCCceeeccCc-CCCCccc
Confidence 888 78887765 8999995 66889999999998776555322 221 1111000 0001111
Q ss_pred HHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 496 SERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 496 ~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
|.-.+..+-+.++...-|-.+.+...-.+.+|++++
T Consensus 390 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (427)
T 3i16_A 390 ELSADAPIREPYIAYLQGGLTFDHAKIGILIALSRI 425 (427)
T ss_dssp SSEEEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred cccCCCCCCCCeEEEEcCCccHHHHHHHHHHHHHHH
Confidence 111222355678889999889999889999988764
No 19
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=1.8e-32 Score=291.81 Aligned_cols=302 Identities=20% Similarity=0.239 Sum_probs=240.1
Q ss_pred CCCcEEE---eCChHHHHHHHHHHhccCCCEEEEcC-CCccchHHHHH-------hhcccCCcEEEEeCC----CCHHHH
Q 009604 214 GAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE-------TVLPKMGITATVIDP----ADMEGL 278 (531)
Q Consensus 214 g~e~~i~---~sSG~~Ai~~al~all~pGD~VIv~~-~~y~~t~~~~~-------~~l~~~Gi~v~~vd~----~d~e~L 278 (531)
|.+.+++ ++||++|+.+++.++++|||+|++++ +.|.++..++. ..++..|+++.+++. .|+++|
T Consensus 88 g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l 167 (427)
T 3hvy_A 88 NTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTV 167 (427)
T ss_dssp TCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHH
T ss_pred CCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHH
Confidence 7888888 89999999999999999999999998 99998876551 346678999999987 799999
Q ss_pred HHhcc--CCCcEEEEEeC----CCCCCCcccCHHHHHHHHHh--cCCEEEEeCCCCCCc-cccccccCCcEEEECCcccc
Q 009604 279 EAALN--NNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI 349 (531)
Q Consensus 279 e~al~--~~~tklV~les----P~NPtG~v~dl~~I~~la~~--~gi~lIvD~a~a~~~-~~~~l~~gaDivv~S~sK~l 349 (531)
+++++ + +||+|++++ |+||+|.+.|+++|+++|++ +|++|++|++|+.+. ...+..+|+|++++|+||++
T Consensus 168 ~~~i~~~~-~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~l 246 (427)
T 3hvy_A 168 KEELKKDD-SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNI 246 (427)
T ss_dssp HHHHHHCT-TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGG
T ss_pred HHHhhCCC-CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccc
Confidence 99998 6 599999999 99999999999999999999 899999999999887 67888899999999999999
Q ss_pred ccCCCceEEEEEeChHHHHHHHHHh--hhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeC
Q 009604 350 GGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALN--PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHY 425 (531)
Q Consensus 350 gg~g~v~gG~iv~~~~li~~l~~~~--~~~G~~~s--~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~ 425 (531)
+|+++.+||+++++++++++++... ...|...+ ...++++++++++++.|++++.+|+..++++|++++. .| +
T Consensus 247 gg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~~~~~~~a~~la~~L~~~g~--~V-~ 323 (427)
T 3hvy_A 247 GGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKGAVFCARIMELAGF--DV-L 323 (427)
T ss_dssp GTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-E
T ss_pred cccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCC--ee-c
Confidence 9998888999999999999988743 22332222 2237888999999999999999999999999999975 56 7
Q ss_pred CCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccc--------cCCcccccccCccccccCCCHHH
Q 009604 426 PGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS--------FGGCESIVDQPAIMSYWDLSQSE 497 (531)
Q Consensus 426 pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS--------~Gg~~Sli~~p~~~s~~~~~~~~ 497 (531)
|+ +++|.|++ +++|.++ +.+.+.+|++.|+.+....| +.|+++.+...+.+--..-+.|.
T Consensus 324 p~-~~~~~~~l----------i~~~~l~-~~~~~~~f~~~l~~~~~~~s~~~p~~~~~~Gy~~~~~~~~~~~~~~~~~e~ 391 (427)
T 3hvy_A 324 PK-YNDKRTDI----------IQAIKFN-DEKKLIDFIKGIQTASPVDSFVQCEAWDMPGYEDKVIMAAGTFVQGASIEL 391 (427)
T ss_dssp SC-TTSCCSSS----------EEEEECS-SHHHHHHHHHHHHHTCSSSTTCCC----------CEEEECCCSSTTCSSSS
T ss_pred CC-CCCCCceE----------EEEEeCC-CHHHHHHHHHHhccccccccccCCCCCCCCCCcCceeeeccccCCCccccc
Confidence 87 77777654 8999995 66889999999987765443 34444433222111000111111
Q ss_pred HHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 498 RLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 498 ~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
-.+..+-+.++...-|-.+.+...-.+.+|++++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (427)
T 3hvy_A 392 SADAPIREPYIGYLQGGLTFDHAKLGVLIALSKL 425 (427)
T ss_dssp EEEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCeeEEEcCCccHHHHHHHHHHHHHHh
Confidence 1223456778999999999999999999998864
No 20
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=100.00 E-value=7.2e-32 Score=285.92 Aligned_cols=299 Identities=17% Similarity=0.179 Sum_probs=236.7
Q ss_pred CCCcEEE---eCChHHHHHHHHHHhccCCCEEEEcC-CCccchHHHHH------hhcccCCcEEEEeCC-----CCHHHH
Q 009604 214 GAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TVLPKMGITATVIDP-----ADMEGL 278 (531)
Q Consensus 214 g~e~~i~---~sSG~~Ai~~al~all~pGD~VIv~~-~~y~~t~~~~~------~~l~~~Gi~v~~vd~-----~d~e~L 278 (531)
|.+.+++ ++||++|+.+++.++++|||+|+++. +.|.++..++. ..++..|+++.+++. .|+++|
T Consensus 73 g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l 152 (409)
T 3jzl_A 73 KTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRI 152 (409)
T ss_dssp TCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHH
T ss_pred CCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHH
Confidence 6777888 89999999999999999999999998 99998776552 356778999999987 699999
Q ss_pred HHhccCCCcEEEEEeC----CCCCCCcccCHHHHHHHHHh--cCCEEEEeCCCCCCc-cccccccCCcEEEECCcccccc
Q 009604 279 EAALNNNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGG 351 (531)
Q Consensus 279 e~al~~~~tklV~les----P~NPtG~v~dl~~I~~la~~--~gi~lIvD~a~a~~~-~~~~l~~gaDivv~S~sK~lgg 351 (531)
++++++ +||+|++++ |+||+|.+.|+++|+++|++ +|+++++|++|+.+. ...+..+|+|++++|+||+++|
T Consensus 153 ~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg 231 (409)
T 3jzl_A 153 AKKMTP-KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGG 231 (409)
T ss_dssp HHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGT
T ss_pred HHhccC-CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCc
Confidence 999987 499999999 99999999999999999999 999999999999886 5678889999999999999999
Q ss_pred CCCceEEEEEeChHHHHHHHHHhhh------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeC
Q 009604 352 HNDVLAGSISGSGKLVTQIRNLHHV------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHY 425 (531)
Q Consensus 352 ~g~v~gG~iv~~~~li~~l~~~~~~------~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~ 425 (531)
+++.+||+++++++++++++..... .|..+.+ +++++++++++..|++++.+++..++++|++++. .| +
T Consensus 232 ~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~--~~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g~--~v-~ 306 (409)
T 3jzl_A 232 GLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYS--LLEMYQGFFLAPHVTAQAIKGARFTAAMLAEFGV--EA-D 306 (409)
T ss_dssp TTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-E
T ss_pred cCCceEEEEEeCHHHHHHHHHHhccccccccccccHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCC--cc-c
Confidence 9988899999999999988764321 2333322 4567899999999999999999999999999975 56 7
Q ss_pred CCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccC--------CcccccccCccccccCCCHHH
Q 009604 426 PGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG--------GCESIVDQPAIMSYWDLSQSE 497 (531)
Q Consensus 426 pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~G--------g~~Sli~~p~~~s~~~~~~~~ 497 (531)
|+ +++|.|++ +++|.++ +.+.+.+|++.|+.+....|+- |++.-+...+...-..-+-|.
T Consensus 307 p~-~~~~~~~~----------i~~i~l~-~~~~~~~~~~~L~~~~~~~s~~~p~~~~~~gy~~~~~~~~~~f~~~~~~e~ 374 (409)
T 3jzl_A 307 PV-WDAPRTDL----------IQSVSFH-NKEKMVAFAQAIQAASPVNAHVLPIGAYMPGYEDDVIMAAGTFIQGASLEL 374 (409)
T ss_dssp SC-TTSCCSSS----------CCEEECS-CHHHHHHHHHHHHHTSSSSTTSCCCCBCCTTCSSCEEEECCCSSTTCSSSC
T ss_pred CC-CCCCCccE----------EEEEEeC-CHHHHHHHHHHHHhcCcccccCCCCCCCCCCCCCceeEeccccCCCcceee
Confidence 87 77777654 8899996 6688999999998776554332 222222111100000011111
Q ss_pred HHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 498 RLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 498 ~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
-.+..+-+.++...-|-.+.+...-.+.+|+++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (409)
T 3jzl_A 375 TADGPIREPYQLYVQGGLTYEHIKIAVTRAIQK 407 (409)
T ss_dssp EEEEESSTTTEEEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCeEEEEcCCccHHHHHHHHHHHHHh
Confidence 122235567889999988999988899888875
No 21
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.94 E-value=4e-25 Score=231.21 Aligned_cols=281 Identities=16% Similarity=0.154 Sum_probs=201.0
Q ss_pred CcEEEeCChHHHHHHHHHHh----ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCC
Q 009604 216 ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNN 286 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~al----l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~ 286 (531)
++++++++|++|+.+++.++ +++||+|+++.++|.++...+...++..|+++.+++. .|+++|++++++ +
T Consensus 91 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~ 169 (420)
T 1t3i_A 91 REIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE-K 169 (420)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT-T
T ss_pred CeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC-C
Confidence 67889999999999999999 8999999999999999754444445556888888875 479999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChH
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 365 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~ 365 (531)
+++|++++|+||+|.+.|+++|.++|+++|++||+|++++.+.. .+....++|+++.|+||.+++.| +|+++++++
T Consensus 170 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g---~G~~~~~~~ 246 (420)
T 1t3i_A 170 TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG---IGFLYGKEE 246 (420)
T ss_dssp EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT---CEEEEECHH
T ss_pred ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCc---eEEEEEchH
Confidence 99999999999999999999999999999999999999876543 23345689999999999888766 689999998
Q ss_pred HHHHHHHHhhh--------------------cCCCchHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHcCCC
Q 009604 366 LVTQIRNLHHV--------------------LGGALNPNAAYLIIR-GMKT-----LHLRVQQQNSTALRMAKILEAHPK 419 (531)
Q Consensus 366 li~~l~~~~~~--------------------~G~~~s~~~a~l~l~-~L~t-----l~~r~~~~~~na~~La~~L~~~p~ 419 (531)
+++.++..... +....++..+++++. .++. +....++..++++.+.+.|++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 326 (420)
T 1t3i_A 247 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQ 326 (420)
T ss_dssp HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88876543211 111122232332221 3333 344556667888899999988776
Q ss_pred ceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHH
Q 009604 420 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL 499 (531)
Q Consensus 420 v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~ 499 (531)
+. +..|.. +. .+.|+++.|.+++ .....+.+.|...++.+..|..+.. | ...
T Consensus 327 ~~-~~~~~~---~~--------~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~---~-----------~~~ 378 (420)
T 1t3i_A 327 LR-LYGPNP---KH--------GDRAALASFNVAG--LHASDVATMVDQDGIAIRSGHHCTQ---P-----------LHR 378 (420)
T ss_dssp EE-EESCCG---GG--------SCBCSEEEEEETT--BCHHHHHHHHHTTTEECBCSCTTCH---H-----------HHH
T ss_pred eE-EeCCCc---cc--------cccCCEEEEEECC--CCHHHHHHHHHHCCeEEeeccccch---H-----------HHH
Confidence 54 333320 00 0247889999864 2345667777767777777643321 0 011
Q ss_pred hcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 500 KYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 500 ~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
..|. ++.||||++...+++.++.+.++|+
T Consensus 379 ~~g~-~~~iRis~~~~~~~~~i~~~~~~l~ 407 (420)
T 1t3i_A 379 LFDA-SGSARASLYFYNTKEEIDLFLQSLQ 407 (420)
T ss_dssp HTTC-CCCEEEECCTTCCHHHHHHHHHHHH
T ss_pred hcCC-CCeEEEecCCCCCHHHHHHHHHHHH
Confidence 1232 5789999998777766776666665
No 22
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.94 E-value=2e-25 Score=231.01 Aligned_cols=269 Identities=13% Similarity=0.149 Sum_probs=191.6
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-------CHHHHHHhccCCC
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-------DMEGLEAALNNNN 286 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-------d~e~Le~al~~~~ 286 (531)
+.++++++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|.++..++.+ |+++|++++++ +
T Consensus 80 ~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~ 154 (375)
T 3op7_A 80 KPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIP----KSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-T 154 (375)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHH----HHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-T
T ss_pred ChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEeccccCCCCCCHHHHHHhhcc-C
Confidence 3578999999999999999999999999999999999876443 4457777766532 89999999987 4
Q ss_pred cEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc---c-ccccCCcEEEECCccccccCCCceEEE
Q 009604 287 VSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---K-ALSLGADLVLHSATKFIGGHNDVLAGS 359 (531)
Q Consensus 287 tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~---~-~l~~gaDivv~S~sK~lgg~g~v~gG~ 359 (531)
+++|++++|+||+|.+.| +++|.++|++||++||+|++|+..... . ....+.++++.|++|.++.+|. .+|+
T Consensus 155 ~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~ 233 (375)
T 3op7_A 155 TKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGI-RIGW 233 (375)
T ss_dssp CCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGG-CCEE
T ss_pred CeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCccc-ceEE
Confidence 999999999999999999 999999999999999999998763221 1 1123567999999999985653 4688
Q ss_pred EEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhh
Q 009604 360 ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR----VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHH 435 (531)
Q Consensus 360 iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~~r----~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~ 435 (531)
+++++++++.++......+...++...+++...++..... .++..++++.+.+.|++++.+..+ .|.
T Consensus 234 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~-------- 304 (375)
T 3op7_A 234 VAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYI-RPA-------- 304 (375)
T ss_dssp EECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEC-CCS--------
T ss_pred EEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEe-cCC--------
Confidence 8889999998887666555555666666555555544332 333467788888899887776432 221
Q ss_pred hhhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009604 436 IATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV 514 (531)
Q Consensus 436 l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGl 514 (531)
.|.++.+.++.+ .....+.+.| +..++.+..|..+. .++.+||+++.
T Consensus 305 --------~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~~g~~~~-----------------------~~~~iRi~~~~ 352 (375)
T 3op7_A 305 --------VVSTSFVKIAVD-MPMEDFCLQLLQEHGVLLVPGNRFE-----------------------RDGYVRLGFAC 352 (375)
T ss_dssp --------SSSCEEEEECCS-SCHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEEECCCS
T ss_pred --------CeEEEeEEcCCC-CCHHHHHHHHHHhCCEEEeChhhhC-----------------------CCCeEEEEecC
Confidence 133455555432 2234555554 44466655553321 14789999997
Q ss_pred CC--HHHHHHHHHHHHH
Q 009604 515 ED--FEDLKADVLQALH 529 (531)
Q Consensus 515 E~--~edli~dL~~AL~ 529 (531)
.+ .++.++.|.++++
T Consensus 353 ~~~~i~~~l~~l~~~l~ 369 (375)
T 3op7_A 353 EQETLIKGLEKLSQFLR 369 (375)
T ss_dssp CHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 64 4455566666654
No 23
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.94 E-value=8.4e-25 Score=228.41 Aligned_cols=269 Identities=16% Similarity=0.128 Sum_probs=199.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCC-----CcE
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN-----NVS 288 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~-----~tk 288 (531)
|.++.+++++|++|+..++.+++++||+|+++.+.|++++. .++..|+++..++..|+++|++++++. +++
T Consensus 104 g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 179 (401)
T 1fc4_A 104 GMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIID----GVRLCKAKRYRYANNDMQELEARLKEAREAGARHV 179 (401)
T ss_dssp TCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSE
T ss_pred CCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHH----HHHHcCCceEEECCCCHHHHHHHHHHhhccCCCce
Confidence 66689999999999999999999999999999999987654 345678999999888999999988641 389
Q ss_pred EEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-c--------cccccCCcEEEECCccccccCCCceEEE
Q 009604 289 LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-Q--------KALSLGADLVLHSATKFIGGHNDVLAGS 359 (531)
Q Consensus 289 lV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~--------~~l~~gaDivv~S~sK~lgg~g~v~gG~ 359 (531)
+|++++|+||+|.+.|+++|.++|+++|++||+|++|+.++. . ..+..+.|+++.|+||++++.. ||+
T Consensus 180 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~---gG~ 256 (401)
T 1fc4_A 180 LIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGY 256 (401)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEE
T ss_pred EEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCC---CEE
Confidence 999999999999999999999999999999999999963322 1 0112257999999999995432 599
Q ss_pred EEeChHHHHHHHHHhh--hcCCCchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchh
Q 009604 360 ISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 434 (531)
Q Consensus 360 iv~~~~li~~l~~~~~--~~G~~~s~~~a~l~l~~L~tl---~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~ 434 (531)
+++++++++.++.... .++...++..++.+...++.+ ....++..++++.+.+.|+++ ++. + +|
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~-------- 325 (401)
T 1fc4_A 257 TAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFT-L-AG-------- 325 (401)
T ss_dssp EEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCC-B-CC--------
T ss_pred EEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCc-c-cC--------
Confidence 9999999888876442 234566777766666666665 355667778888899999876 332 1 12
Q ss_pred hhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009604 435 HIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV 514 (531)
Q Consensus 435 ~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGl 514 (531)
+.|++++|.+++ ......+.+.|...++.+..|..+.. + -.++.+||+++.
T Consensus 326 --------~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~------------~--------~~~~~iRi~~~~ 376 (401)
T 1fc4_A 326 --------ADHAIIPVMLGD-AVVAQKFARELQKEGIYVTGFFYPVV------------P--------KGQARIRTQMSA 376 (401)
T ss_dssp --------SSSSEEEEEEEC-HHHHHHHHHHHHHTTEECCEECTTSS------------C--------TTCEEEEEECCT
T ss_pred --------CCCCEEEEEcCC-hHHHHHHHHHHHHCCcEEeeecCCCC------------C--------CCCceEEEEeCC
Confidence 146789999964 24556777777655766665533211 0 024689999997
Q ss_pred CCHHHHHHHHHHHHH
Q 009604 515 EDFEDLKADVLQALH 529 (531)
Q Consensus 515 E~~edli~dL~~AL~ 529 (531)
..+++.++.+.++|+
T Consensus 377 ~~~~~~i~~~~~~l~ 391 (401)
T 1fc4_A 377 AHTPEQITRAVEAFT 391 (401)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 666665665555554
No 24
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.94 E-value=1.9e-24 Score=222.68 Aligned_cols=261 Identities=15% Similarity=0.193 Sum_probs=193.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCcEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSL 289 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~~tkl 289 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|+++.+++.+ |+++|+++++++ +++
T Consensus 84 ~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~ 158 (363)
T 3ffh_A 84 EEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQN----ALIEGAEVREIPLLQDGEHDLEGMLNAIDEK-TTI 158 (363)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHH----HHHHTCEEEEEECCTTSCCCHHHHHHHCCTT-EEE
T ss_pred hhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHH----HHHcCCEEEEecCCCCCCcCHHHHHHhcccC-CCE
Confidence 57888999999999999999999999999999999885543 34458888888765 899999999874 999
Q ss_pred EEEeCCCCCCCcccCHHHHHHHHHhc--CCEEEEeCCCCCCcc------cc-ccccCCcEEEECCccccccCCCceEEEE
Q 009604 290 FFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN------QK-ALSLGADLVLHSATKFIGGHNDVLAGSI 360 (531)
Q Consensus 290 V~lesP~NPtG~v~dl~~I~~la~~~--gi~lIvD~a~a~~~~------~~-~l~~gaDivv~S~sK~lgg~g~v~gG~i 360 (531)
|++++|+||||.+.|+++|.++++.+ |+++|+|++|+.... .. ....+.++++.|++|.++.+|.. .|++
T Consensus 159 v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r-~G~~ 237 (363)
T 3ffh_A 159 VWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASAR-VGYG 237 (363)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCC-CEEE
T ss_pred EEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhc-eeee
Confidence 99999999999999999999999887 999999999873221 11 11234558899999999866643 6888
Q ss_pred EeChHHHHHHHHHhhhcCCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhh
Q 009604 361 SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIA 437 (531)
Q Consensus 361 v~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L---~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~ 437 (531)
++++++++.++.....+ ..++..++.+...+ +.+..+.++..++++.+.+.|++++++.. +|.
T Consensus 238 ~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~--~~~---------- 303 (363)
T 3ffh_A 238 IADKEIIRQLNIVRPPF--NTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKL--YPA---------- 303 (363)
T ss_dssp EECHHHHHHHHHTCCSC--CCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEE--CCC----------
T ss_pred ecCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceE--CCC----------
Confidence 88999998887765433 45555555555555 45566667777888899999988766542 222
Q ss_pred hhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCH
Q 009604 438 TQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF 517 (531)
Q Consensus 438 ~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~ 517 (531)
.|+++++.++. ...++.+.|...++.++.|..+ +. ++.||||++ +
T Consensus 304 ------~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~g~~~----------------------~~-~~~iRis~~---~ 348 (363)
T 3ffh_A 304 ------NGNFVLIDLGI---EAGTIFSYLEKNGYITRSGAAL----------------------GF-PTAVRITIG---K 348 (363)
T ss_dssp ------CSSEEEEECSS---CHHHHHHHHHHTTEECEETTTT----------------------TC-TTEEEEECC---C
T ss_pred ------CCeEEEEECCC---CHHHHHHHHHHCCeEEEeCccC----------------------CC-CCeEEEECC---C
Confidence 35688898864 3345666665557766666432 11 579999999 4
Q ss_pred HHHHHHHHHHHHh
Q 009604 518 EDLKADVLQALHA 530 (531)
Q Consensus 518 edli~dL~~AL~~ 530 (531)
++.++.+.++|++
T Consensus 349 ~~~i~~~~~~l~~ 361 (363)
T 3ffh_A 349 EEDNSAVIALLEK 361 (363)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666653
No 25
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.94 E-value=3.7e-25 Score=227.66 Aligned_cols=282 Identities=14% Similarity=0.124 Sum_probs=189.7
Q ss_pred CcEEEeCChHHHHHHHHHHhc----cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCC
Q 009604 216 ESTVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNN 286 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all----~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~~ 286 (531)
++++++++|++|+.+++.+++ ++||+|+++.+.|++....+. .+...|+++.+++.+ |+++|+++++++
T Consensus 61 ~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~- 138 (382)
T 4hvk_A 61 GTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDD- 138 (382)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHHHTTCEEEEECBCTTSCBCHHHHHHHCCTT-
T ss_pred CeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHH-HHHhcCCEEEEeccCCCCCcCHHHHHHHhccC-
Confidence 457788888899999999987 999999999999998776553 345678999888754 899999999874
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChH
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 365 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~ 365 (531)
+++|++++|+||||.+.|+++|.++|+++|+ ||+|++++.+.. ......++|+++.|+||++|+.| .|+++.+++
T Consensus 139 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g---~g~~~~~~~ 214 (382)
T 4hvk_A 139 TILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG---VGALWIRKE 214 (382)
T ss_dssp EEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTT---CEEEEEETT
T ss_pred ceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCc---eEEEEEcCc
Confidence 9999999999999999999999999999999 999999876543 23334579999999999887665 455555443
Q ss_pred HHHHHHHHh-------hhcCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchh
Q 009604 366 LVTQIRNLH-------HVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 434 (531)
Q Consensus 366 li~~l~~~~-------~~~G~~~s~~~a~l~l~~L~----tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~ 434 (531)
. .++... .....+.+....+.+...++ .+....++..++++.+.+.|++.|++. +..+.-
T Consensus 215 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~------ 285 (382)
T 4hvk_A 215 A--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESY-LNGHPE------ 285 (382)
T ss_dssp C--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-ECSCSS------
T ss_pred c--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeE-EeCCcc------
Confidence 2 111111 11122333333333333333 334455666677888888888777653 222210
Q ss_pred hhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCC----CCeEEE
Q 009604 435 HIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM----DNLVRF 510 (531)
Q Consensus 435 ~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~----~~lIRl 510 (531)
.+.++++.|.+++. ....+.+.|...++.++.|..++..... +......+|+. ++.|||
T Consensus 286 -------~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~~~~iRl 348 (382)
T 4hvk_A 286 -------KRLPNNVNVRFSYI--EGESIVLSLDMAGIQASTGSACSSKTLQ--------PSHVLMACGLKHEEAHGTLLL 348 (382)
T ss_dssp -------SBCTTEEEEEETTC--CHHHHHHHHHHTTCBCBCC--------C--------CCHHHHHTTCCHHHHHTEEEE
T ss_pred -------ccCCCEEEEEECCC--CHHHHHHHHHHCCEEEeeCCccCCCCCc--------chHHHHHcCCChhhcCCeEEE
Confidence 12356899998752 3456667776668888888665432111 11122334443 589999
Q ss_pred EecCCCHHHHHHHHHHHHH
Q 009604 511 SFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 511 SvGlE~~edli~dL~~AL~ 529 (531)
+++...+++.++.+.++|+
T Consensus 349 ~~~~~~t~e~i~~~~~~l~ 367 (382)
T 4hvk_A 349 TLGRYNTDEDVDRLLEVLP 367 (382)
T ss_dssp ECCTTCCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 9997666555555555554
No 26
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.94 E-value=1.3e-24 Score=225.59 Aligned_cols=269 Identities=10% Similarity=0.090 Sum_probs=200.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCC--CcEEEE
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN--NVSLFF 291 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~--~tklV~ 291 (531)
|.++.+++++|++|+..++.+++++||+|+++.+.|+.+... ++..|.++..++..|+++|++++++. ++++|+
T Consensus 98 g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~ 173 (384)
T 1bs0_A 98 GYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEA----ASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVV 173 (384)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEE
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHH----HHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEE
Confidence 667899999999999999999999999999999999876543 34468999999988999999998753 379999
Q ss_pred EeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc-------cccccCCcEEEECCccccccCCCceEEEEEeCh
Q 009604 292 TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALSLGADLVLHSATKFIGGHNDVLAGSISGSG 364 (531)
Q Consensus 292 lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~-------~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~ 364 (531)
+++|+||+|.+.|+++|.++|+++|++||+|++|+.+... .....+.|+++.|+||++++. ||++++++
T Consensus 174 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~----GG~~~~~~ 249 (384)
T 1bs0_A 174 TEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS----GAAVLCSS 249 (384)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC----CEEEEECH
T ss_pred EeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhcc----CcEEEeCH
Confidence 9999999999999999999999999999999998765321 112245899999999999864 48999999
Q ss_pred HHHHHHHHHhh--hcCCCchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhh
Q 009604 365 KLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIA 437 (531)
Q Consensus 365 ~li~~l~~~~~--~~G~~~s~~~a~l~l~~L~tl-----~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~ 437 (531)
++++.++.... ..+...++.....+...++.+ ....++..++++.+.+.|+++ ++. + +|.
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~---------- 316 (384)
T 1bs0_A 250 TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFT-L-ADS---------- 316 (384)
T ss_dssp HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCE-E-CSC----------
T ss_pred HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCc-c-cCC----------
Confidence 98888776432 223345666555544444443 345566677888888888876 232 2 121
Q ss_pred hhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCH
Q 009604 438 TQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF 517 (531)
Q Consensus 438 ~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~ 517 (531)
.++++++.++. .....++.+.|...++.+..|..... ...++.+||+++...+
T Consensus 317 ------~~~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--------------------~~~~~~~Ri~~~~~~~ 369 (384)
T 1bs0_A 317 ------CSAIQPLIVGD-NSRALQLAEKLRQQGCWVTAIRPPTV--------------------PAGTARLRLTLTAAHE 369 (384)
T ss_dssp ------CSSBCCEEEES-HHHHHHHHHHHHHTTEECCEECTTSS--------------------CTTCEEECCBCCTTCC
T ss_pred ------CCCEEEEEeCC-HHHHHHHHHHHHHCCcEEEeecCCCC--------------------CCCCceEEEEEcCCCC
Confidence 35677888863 24566777777655766665532110 0124789999999888
Q ss_pred HHHHHHHHHHHHh
Q 009604 518 EDLKADVLQALHA 530 (531)
Q Consensus 518 edli~dL~~AL~~ 530 (531)
++.++.+.++|++
T Consensus 370 ~~~i~~~~~~l~~ 382 (384)
T 1bs0_A 370 MQDIDRLLEVLHG 382 (384)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888865
No 27
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.94 E-value=7.2e-25 Score=229.08 Aligned_cols=279 Identities=14% Similarity=0.079 Sum_probs=198.3
Q ss_pred CcEEEeCChHHHHHHHHHHh---ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHHhccCCC
Q 009604 216 ESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEAALNNNN 286 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~al---l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~al~~~~ 286 (531)
++++++++|++++.+++.++ +++||+|+++.++|.+++..+....+..|+++.+++.+ |+++|++++++ +
T Consensus 87 ~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~-~ 165 (406)
T 3cai_A 87 GGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK-S 165 (406)
T ss_dssp GGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT-T
T ss_pred CeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC-C
Confidence 46778888889999999887 78999999999999987765544444468888888764 88999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChH
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 365 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~ 365 (531)
+++|++++|+||||.+.|+++|.++|+++|++||+|++++.+.. .+...+++|+++.|+||++++. +||+++++++
T Consensus 166 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~---~G~~~~~~~~ 242 (406)
T 3cai_A 166 TRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP---IGAMVFRDPS 242 (406)
T ss_dssp EEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS---CEEEEESCHH
T ss_pred ceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC---cCeEEEEehH
Confidence 99999999999999999999999999999999999999976533 3333468999999999988643 2439999988
Q ss_pred HHHHHHHHhh---------hcCCCchHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHcC
Q 009604 366 LVTQIRNLHH---------VLGGALNPNAAYLIIRGMKT-------------------LHLRVQQQNSTALRMAKILEAH 417 (531)
Q Consensus 366 li~~l~~~~~---------~~G~~~s~~~a~l~l~~L~t-------------------l~~r~~~~~~na~~La~~L~~~ 417 (531)
+++.++.... ...++.+......+...++. +....++..++++.+.+.|++.
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 322 (406)
T 3cai_A 243 VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL 322 (406)
T ss_dssp HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 8776654321 11223333322222222222 3444555667888888999887
Q ss_pred CCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHH
Q 009604 418 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSE 497 (531)
Q Consensus 418 p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~ 497 (531)
+++. +..|. ...+++++|.+++ .....+.+.|...++.++.|.... .
T Consensus 323 ~~~~-~~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~L~~~gi~v~~g~~~~----------------~ 369 (406)
T 3cai_A 323 PLVM-LIGRP--------------EAQIPVVSFAVHK--VPADRVVQRLADNGILAIANTGSR----------------V 369 (406)
T ss_dssp TTEE-ECCCC--------------SSBCSEEEEEETT--BCHHHHHHHHHHTTEECEECCSCH----------------H
T ss_pred CCeE-EcCCc--------------cccCCEEEEEECC--cCHHHHHHHHHHCCcEEecCChHH----------------H
Confidence 7653 33221 0134589999874 224456666655677777664111 0
Q ss_pred HHhcCCC--CCeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 498 RLKYGIM--DNLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 498 ~~~~gi~--~~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
...+|.. ++.||||++..++++.++.+.++|+++
T Consensus 370 ~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 370 LDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp HHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 1122332 478999999998898999999998764
No 28
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.93 E-value=1.4e-24 Score=225.77 Aligned_cols=278 Identities=15% Similarity=0.170 Sum_probs=195.7
Q ss_pred CcEEEeCChHHHHHHHHHHh----ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCC
Q 009604 216 ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNN 286 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~al----l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~ 286 (531)
++++++++|++|+.+++.++ +++||+|+++.++|.+++..+...++..|+++.+++. .|+++|++++++ +
T Consensus 86 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~-~ 164 (406)
T 1kmj_A 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE-K 164 (406)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT-T
T ss_pred CeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc-C
Confidence 57888888889999999999 8999999999999998776555555666888888875 378999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChH
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 365 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~ 365 (531)
+++|++++|+||||.+.|+++|.++|+++|++||+|++|+.+.. ......++|+++.|+||.+++.| .|+++++++
T Consensus 165 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G---~G~~~~~~~ 241 (406)
T 1kmj_A 165 TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG---IGILYVKEA 241 (406)
T ss_dssp EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT---CEEEEECHH
T ss_pred CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCC---cEEEEEeHH
Confidence 99999999999999999999999999999999999999876532 22234579999999999997766 589999988
Q ss_pred HHHHHHHHhh---------------------hcCCCchHHHHHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHHHcCC
Q 009604 366 LVTQIRNLHH---------------------VLGGALNPNAAYLII-RGMKTL-----HLRVQQQNSTALRMAKILEAHP 418 (531)
Q Consensus 366 li~~l~~~~~---------------------~~G~~~s~~~a~l~l-~~L~tl-----~~r~~~~~~na~~La~~L~~~p 418 (531)
+++.++.... .+....++..++.++ ..++.+ ....++..++++.+.+.|++.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 321 (406)
T 1kmj_A 242 LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVP 321 (406)
T ss_dssp HHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8887654321 010111222222222 233333 2344556677888888888876
Q ss_pred CceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHH
Q 009604 419 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER 498 (531)
Q Consensus 419 ~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~ 498 (531)
++. +..|. +.|+++.|.+++. ....+.+.|...++.+..|..++. ...
T Consensus 322 ~~~-~~~~~---------------~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~--------------~~~ 369 (406)
T 1kmj_A 322 DLT-LYGPQ---------------NRLGVIAFNLGKH--HAYDVGSFLDNYGIAVRTGHHCAM--------------PLM 369 (406)
T ss_dssp TEE-EESCT---------------TCCSEEEEEETTC--CHHHHHHHHHHTTEECEEECTTCH--------------HHH
T ss_pred CeE-EecCC---------------CcCCEEEEEECCC--CHHHHHHHHhhCCcEEEeccccch--------------HHH
Confidence 653 22221 0367888888641 234556666555776666643321 011
Q ss_pred HhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 499 LKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 499 ~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
..+|. ++.||||++..++++.++.+.++|++
T Consensus 370 ~~~g~-~~~iRis~~~~~t~~~i~~~~~~l~~ 400 (406)
T 1kmj_A 370 AYYNV-PAMCRASLAMYNTHEEVDRLVTGLQR 400 (406)
T ss_dssp HHTTC-SCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HhcCC-CCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 12232 57999999998776667766666653
No 29
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.93 E-value=9.2e-25 Score=229.48 Aligned_cols=284 Identities=18% Similarity=0.192 Sum_probs=196.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcc----CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCC
Q 009604 215 AESTVIMASGMSASTVMLLALVP----AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNN 285 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~----pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~ 285 (531)
.++++++++|++|+.+++.++++ +||+|+++.+.|.+....+.. +...|+++.+++.+ |+++|+++++++
T Consensus 85 ~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 85 PREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLAPQRNGIIDLKELEAAMRDD 163 (423)
T ss_dssp GGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHH-HHHTTCEEEEECCCTTSCCCHHHHHHHCCTT
T ss_pred CCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHH-HHHcCCEEEEeccCCCCccCHHHHHHhcCCC
Confidence 34889999999999999998874 899999999999987765533 36668898888764 899999999884
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeCh
Q 009604 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG 364 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~ 364 (531)
+++|++++|+||+|.+.|+++|.++|+++|++||+|++++.+.. ......++|+++.|+||.+++.+ .|++++++
T Consensus 164 -~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g---~G~~~~~~ 239 (423)
T 3lvm_A 164 -TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG---IGALYVRR 239 (423)
T ss_dssp -EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSS---CEEEEECB
T ss_pred -cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCC---eEEEEEec
Confidence 99999999999999999999999999999999999999876543 34445689999999999888766 57888776
Q ss_pred HHHHHHHHHhh-------hcCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCch
Q 009604 365 KLVTQIRNLHH-------VLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE 433 (531)
Q Consensus 365 ~li~~l~~~~~-------~~G~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~ 433 (531)
+..+.+..... ....+.+......+...++. +....++..++++.+.+.|++.|++..+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------ 313 (423)
T 3lvm_A 240 KPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLE------ 313 (423)
T ss_dssp TTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCST------
T ss_pred cccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcc------
Confidence 65544433211 11123333333322223332 34455666677888888888777664332111
Q ss_pred hhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCC----CCeEE
Q 009604 434 HHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM----DNLVR 509 (531)
Q Consensus 434 ~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~----~~lIR 509 (531)
.+.++++.|.+++ .....+.+.|.. +.+..|..++.... .+......+|+. ++.||
T Consensus 314 --------~~~~~~~~~~~~~--~~~~~l~~~l~~--i~v~~g~~~~~~~~--------~~~~~~~~~g~~~~~~~~~iR 373 (423)
T 3lvm_A 314 --------HGAPNILNVSFNY--VEGESLIMALKD--LAVSSGSACTSASL--------EPSYVLRALGLNDELAHSSIR 373 (423)
T ss_dssp --------TBCTTEEEEEETT--SCHHHHHHHTTT--EECBCCCC-----C--------CCCHHHHHHTCCHHHHHTEEE
T ss_pred --------ccCCCeEEEEeCC--CCHHHHHHHHhh--heeccCccccCCCc--------cccHHHHHhCCCccccCceEE
Confidence 1245788888864 234567777765 67777755432110 011223334554 48999
Q ss_pred EEecCCCHHHHHHHHHHHHH
Q 009604 510 FSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 510 lSvGlE~~edli~dL~~AL~ 529 (531)
|+++...+++.++.+.++|+
T Consensus 374 i~~~~~~t~e~i~~~~~~l~ 393 (423)
T 3lvm_A 374 FSLGRFTTEEEIDYTIELVR 393 (423)
T ss_dssp EECCTTCCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99997766666666555554
No 30
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.93 E-value=1.6e-25 Score=238.83 Aligned_cols=240 Identities=19% Similarity=0.239 Sum_probs=191.4
Q ss_pred CCcEEE---eCChHHHHHHHHHHhccCCCEEEEcC-CCccchHHHHH------hhcccCCcEEEEeCC-----CCHHHHH
Q 009604 215 AESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TVLPKMGITATVIDP-----ADMEGLE 279 (531)
Q Consensus 215 ~e~~i~---~sSG~~Ai~~al~all~pGD~VIv~~-~~y~~t~~~~~------~~l~~~Gi~v~~vd~-----~d~e~Le 279 (531)
.+.+++ ++||++|+.+++.+++++||+|+++. +.|..+...+. ..++..|+++.+++. .|+++|+
T Consensus 80 ~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~ 159 (431)
T 3ht4_A 80 AEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVA 159 (431)
T ss_dssp CSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHH
T ss_pred CCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHH
Confidence 344544 78999999999999999999999998 89988765542 345668999999987 4899999
Q ss_pred HhccCCCcEEEEEeC-CCCCC---CcccCHHHHHHHHHh--cCCEEEEeCCCCCCc-cccccccCCcEEEECCccccccC
Q 009604 280 AALNNNNVSLFFTES-PTNPF---LRCVDVKLVSDLCHK--KGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGH 352 (531)
Q Consensus 280 ~al~~~~tklV~les-P~NPt---G~v~dl~~I~~la~~--~gi~lIvD~a~a~~~-~~~~l~~gaDivv~S~sK~lgg~ 352 (531)
+++++ +|++|++++ |+||+ |.+.|+++|+++|++ +|++||+|++|+.+. ..++..+|+|+++.|++|+++|+
T Consensus 160 ~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~ 238 (431)
T 3ht4_A 160 AAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGG 238 (431)
T ss_dssp HHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTT
T ss_pred hhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCC
Confidence 99987 499999995 55555 555678999999999 999999999998876 36778889999999999999997
Q ss_pred CCceEEEEEeChHHHHHHHHHhhh--cCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCC
Q 009604 353 NDVLAGSISGSGKLVTQIRNLHHV--LGGALNP--NAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 428 (531)
Q Consensus 353 g~v~gG~iv~~~~li~~l~~~~~~--~G~~~s~--~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl 428 (531)
.+..||++++++++++.++..... .|...++ ..+++++++++++..+++++.++++.++++|++++. .+ +|.
T Consensus 239 ~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~L~~~g~--~v-~p~- 314 (431)
T 3ht4_A 239 IVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGM--NT-SPA- 314 (431)
T ss_dssp TCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CE-ESC-
T ss_pred CCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHhCcC--Ee-cCC-
Confidence 777789999999999988764432 2322222 225667889999999999999999999999998764 34 565
Q ss_pred CCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCC
Q 009604 429 KSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY 470 (531)
Q Consensus 429 ~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~ 470 (531)
++++.+ +-+++|.++ +.+.+.+|++.|+.+.
T Consensus 315 ~~~~~~----------~li~~i~l~-~~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 315 WNAPRT----------DLIQSVQFD-DKDRMIAFCQAIQYAS 345 (431)
T ss_dssp TTSCCS----------SSCCEEECC-CHHHHHHHHHHHHHTS
T ss_pred CCCCCc----------cEEEEEEeC-CHHHHHHHHHHHHhcC
Confidence 444433 348899996 5578889999998654
No 31
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=1.4e-24 Score=225.83 Aligned_cols=269 Identities=16% Similarity=0.144 Sum_probs=196.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCC-----CcE
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN-----NVS 288 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~-----~tk 288 (531)
+.++.+++++|++|+..++.+++++||+|+++.+.|+++.. .++..|.++..++..|+++|++++++. +++
T Consensus 102 ~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 177 (399)
T 3tqx_A 102 GTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIID----GIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFK 177 (399)
T ss_dssp TCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSE
T ss_pred CCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHH----HHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCce
Confidence 77789999999999999999999999999999999988653 445668899889888999999888651 489
Q ss_pred EEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc-------cccc--cCCcEEEECCccccccCCCceEEE
Q 009604 289 LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALS--LGADLVLHSATKFIGGHNDVLAGS 359 (531)
Q Consensus 289 lV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~-------~~l~--~gaDivv~S~sK~lgg~g~v~gG~ 359 (531)
+|++++|+||||.+.|+++|.++|+++|+++|+|++|+.++.. .... .+.|+++.|+||+++|. .||+
T Consensus 178 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~---~gG~ 254 (399)
T 3tqx_A 178 LIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGA---SGGY 254 (399)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSS---CCEE
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccC---ceEE
Confidence 9999999999999999999999999999999999999644321 1112 26799999999999943 3699
Q ss_pred EEeChHHHHHHHHHhh--hcCCCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCch
Q 009604 360 ISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL----HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE 433 (531)
Q Consensus 360 iv~~~~li~~l~~~~~--~~G~~~s~~~a~l~l~~L~tl----~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~ 433 (531)
+++++++++.+..... .++...++..++.+...++.+ ....++..++++.+.+.|++. ++. +. +
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-~------- 324 (399)
T 3tqx_A 255 TSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL-GFQ-LV-P------- 324 (399)
T ss_dssp EEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-TCC-BC-C-------
T ss_pred EEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-CCC-cC-C-------
Confidence 9999999888876433 234456666555555555544 445566667788888888765 221 11 1
Q ss_pred hhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec
Q 009604 434 HHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG 513 (531)
Q Consensus 434 ~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvG 513 (531)
..|+++++.++. .....++.+.|...++.+..+..... ...++.|||+++
T Consensus 325 ---------~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~--------------------~~~~~~iRi~~~ 374 (399)
T 3tqx_A 325 ---------GNHPIIPVMLGD-AQLATNMADHLLQEGIYVVGFSYPVV--------------------PMGKARIRVQMS 374 (399)
T ss_dssp ---------CSSSEEEEEEEC-HHHHHHHHHHHHHTTEECCEECTTTS--------------------CTTCEEEEEECC
T ss_pred ---------CCCCEEEEEeCC-HHHHHHHHHHHHHCCCEEeeeCCCCC--------------------CCCCceEEEEee
Confidence 146789999874 34566777777655665553321100 012468999998
Q ss_pred CCCHHHHHHHHHHHHH
Q 009604 514 VEDFEDLKADVLQALH 529 (531)
Q Consensus 514 lE~~edli~dL~~AL~ 529 (531)
...+++.++.+.++|+
T Consensus 375 ~~~~~~~i~~~~~~l~ 390 (399)
T 3tqx_A 375 AVHTQQQLDRAIEAFG 390 (399)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 6655555555554443
No 32
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.93 E-value=4.1e-25 Score=226.06 Aligned_cols=268 Identities=18% Similarity=0.185 Sum_probs=187.4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCHHHHHHhccCC----
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNNN---- 285 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~d~e~Le~al~~~---- 285 (531)
|.+++++++||++|+.+++.+++++||+|+++.++|..++... ..+...|+++.+++. .|+++|++++++.
T Consensus 52 g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~ 130 (347)
T 1jg8_A 52 GKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHF 130 (347)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTS
T ss_pred CCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcccc-chhhccCeEEEEecCCCCccCHHHHHHHhccccccc
Confidence 6778999999999999999999999999999999997654311 123345777776621 2899999999751
Q ss_pred -CcEEEEEeCCCCCC-CcccCH---HHHHHHHHhcCCEEEEeCCCCC------CccccccccCCcEEEECCccccccCCC
Q 009604 286 -NVSLFFTESPTNPF-LRCVDV---KLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGADLVLHSATKFIGGHND 354 (531)
Q Consensus 286 -~tklV~lesP~NPt-G~v~dl---~~I~~la~~~gi~lIvD~a~a~------~~~~~~l~~gaDivv~S~sK~lgg~g~ 354 (531)
+|++|++++|+||| |.++++ ++|.++|+++|++||+|+++.. +.....+..++|.++.|+||++++.
T Consensus 131 ~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~-- 208 (347)
T 1jg8_A 131 PRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-- 208 (347)
T ss_dssp CCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS--
T ss_pred cCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC--
Confidence 49999999999999 999764 6888999999999999998632 1122223346888889999999864
Q ss_pred ceEEEEEeChHHHHHHHHHhhhcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCc
Q 009604 355 VLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHP 432 (531)
Q Consensus 355 v~gG~iv~~~~li~~l~~~~~~~G~~~--s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p 432 (531)
+||+++++++++++++..+..+|... ....+++...+++....++++..++++.+.+.|+++ ++. +.++.
T Consensus 209 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~----- 280 (347)
T 1jg8_A 209 -VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEI-GYS-VNPED----- 280 (347)
T ss_dssp -SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHH-TCB-CCGGG-----
T ss_pred -ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cce-eccCC-----
Confidence 36678889888888876665555433 445555555566665455666667788888888875 332 11110
Q ss_pred hhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe
Q 009604 433 EHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF 512 (531)
Q Consensus 433 ~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSv 512 (531)
..++++++.++....+..+|.+.|...++.++.+ .++.|||++
T Consensus 281 ----------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~---------------------------~~~~iRl~~ 323 (347)
T 1jg8_A 281 ----------VKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV---------------------------SDTEIRLVT 323 (347)
T ss_dssp ----------CCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE---------------------------ETTEEEEEC
T ss_pred ----------CcceEEEEEcccccCCHHHHHHHHHHCCCEEecC---------------------------CCCeEEEEe
Confidence 1367889988631123456777775555554422 035799999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 009604 513 GVEDFEDLKADVLQALH 529 (531)
Q Consensus 513 GlE~~edli~dL~~AL~ 529 (531)
+...+++.++.+.++|+
T Consensus 324 ~~~~~~e~i~~~~~~l~ 340 (347)
T 1jg8_A 324 HKDVSRNDIEEALNIFE 340 (347)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 87666655665555554
No 33
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.93 E-value=3.1e-24 Score=221.34 Aligned_cols=261 Identities=14% Similarity=0.196 Sum_probs=192.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSL 289 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tkl 289 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|+++..++. .|+++|++++++ ++++
T Consensus 82 ~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~ 156 (365)
T 3get_A 82 NENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIY----AKQCGAKCYKTQSITHNLDEFKKLYETHKD-EIKL 156 (365)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHH----HHHHTCEEEECSSSSCCHHHHHHHHHHTTT-TEEE
T ss_pred cceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHH----HHHcCCEEEEEecCCCCCCCHHHHHHHhCC-CCCE
Confidence 57888999999999999999999999999999999876543 3445888888886 468899999987 4999
Q ss_pred EEEeCCCCCCCcccCHHHHHHHHH--hcCCEEEEeCCCCCCc---c----cccc----ccCCcEEEECCccccccCCCce
Q 009604 290 FFTESPTNPFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPL---N----QKAL----SLGADLVLHSATKFIGGHNDVL 356 (531)
Q Consensus 290 V~lesP~NPtG~v~dl~~I~~la~--~~gi~lIvD~a~a~~~---~----~~~l----~~gaDivv~S~sK~lgg~g~v~ 356 (531)
|++++|+||||.++|++++.++++ ++|+++|+|++|+... . .... ..+.++++.|+||.++.+|..
T Consensus 157 v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r- 235 (365)
T 3get_A 157 IFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLR- 235 (365)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTC-
T ss_pred EEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchh-
Confidence 999999999999999999998888 6799999999987332 1 1111 236779999999999866643
Q ss_pred EEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCch
Q 009604 357 AGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPE 433 (531)
Q Consensus 357 gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L---~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~ 433 (531)
.|++++++++++.++.....++ .++...+.+...+ +.+..+.++..++++.+.+.|+++ ++. + +|.
T Consensus 236 ~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~-~~~------ 304 (365)
T 3get_A 236 IGYGIANANIISAFYKLRAPFN--VSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIK-I-IDS------ 304 (365)
T ss_dssp CEEEEECHHHHHHHHHHSCTTC--SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-CCC------
T ss_pred eEEEEcCHHHHHHHHHhcCCCC--cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCE-E-CCC------
Confidence 6788889999998887665544 4444444444343 345666677778888999999887 443 2 222
Q ss_pred hhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec
Q 009604 434 HHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG 513 (531)
Q Consensus 434 ~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvG 513 (531)
.|+++++.+++. ....+.+.|...++.++.|+.+ + ++.||||++
T Consensus 305 ----------~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~----------------------~--~~~iRis~~ 348 (365)
T 3get_A 305 ----------YTNFITYFFDEK--NSTDLSEKLLKKGIIIRNLKSY----------------------G--LNAIRITIG 348 (365)
T ss_dssp ----------SSSEEEEECSSS--CHHHHHHHHHTTTEECEECGGG----------------------T--CSEEEEECC
T ss_pred ----------CCeEEEEECCCC--CHHHHHHHHHHCCEEEEECccC----------------------C--CCEEEEEcC
Confidence 356788988753 4566777776667777766432 2 478999999
Q ss_pred C-CCHHHHHHHHHHHH
Q 009604 514 V-EDFEDLKADVLQAL 528 (531)
Q Consensus 514 l-E~~edli~dL~~AL 528 (531)
. ++.+.+++.|.++|
T Consensus 349 ~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 349 TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 3 23344444444443
No 34
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.93 E-value=4.1e-24 Score=221.04 Aligned_cols=270 Identities=14% Similarity=0.061 Sum_probs=190.1
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhcc--CCCcE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALN--NNNVS 288 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~--~~~tk 288 (531)
+.++++++|++|+.+++.+++++||+|+++.+.|.+.. +...+...|+++..++. .|+++|+++++ + +++
T Consensus 72 ~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~~ 148 (386)
T 2dr1_A 72 EVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNP-DVE 148 (386)
T ss_dssp EEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCT-TCC
T ss_pred cEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCC-CCc
Confidence 44777888889999999999999999999999998731 22344556888888765 58999999994 4 489
Q ss_pred EEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHH
Q 009604 289 LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV 367 (531)
Q Consensus 289 lV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li 367 (531)
+|++++|+||+|.+.|+++|.++|+++|++||+|++|+.+.. ......++|+++.|+||+++++.+ +|+++++++++
T Consensus 149 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g--~G~~~~~~~~~ 226 (386)
T 2dr1_A 149 AVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPG--LAIGAFSERFL 226 (386)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSS--CEEEEECHHHH
T ss_pred EEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCc--eEEEEECHHHH
Confidence 999999999999999999999999999999999999876533 233345789999999999997643 58999998888
Q ss_pred HHHH----------------HHh--hhcCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCceEE
Q 009604 368 TQIR----------------NLH--HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAHPKVKRV 423 (531)
Q Consensus 368 ~~l~----------------~~~--~~~G~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~p~v~~V 423 (531)
+.++ ... .....+.++...+.+...++. +....++..++++.+.+.|+++ ++. +
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~-~ 304 (386)
T 2dr1_A 227 EIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLD-I 304 (386)
T ss_dssp HHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCC-B
T ss_pred HHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCe-e
Confidence 7662 111 122234455444444444443 3455666778888899999876 432 1
Q ss_pred eCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCC
Q 009604 424 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI 503 (531)
Q Consensus 424 ~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi 503 (531)
..|. .+ ..+++++|.++.+ ....++.+.|...++.+..|... .
T Consensus 305 ~~~~-----~~--------~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~-----------------------~ 347 (386)
T 2dr1_A 305 LAEP-----GH--------ESPTITAVLTPPG-IKGDEVYEAMRKRGFELAKGYGS-----------------------V 347 (386)
T ss_dssp SSCT-----TC--------BCSSEEEEECCTT-CCHHHHHHHHHHTTEECEECCGG-----------------------G
T ss_pred CcCc-----cc--------cCCceEEEEcCCC-CCHHHHHHHHHHCCeEEecCccc-----------------------c
Confidence 1110 00 1467899998632 23456677775556666655321 0
Q ss_pred CCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 504 MDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 504 ~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
.++.|||+++...+++.++.+.++|+
T Consensus 348 ~~~~iRi~~~~~~~~~~i~~~~~~l~ 373 (386)
T 2dr1_A 348 KEKTFRIGHMGYMKFEDIQEMLDNLR 373 (386)
T ss_dssp TTTEEEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 25789999997555555555554443
No 35
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.93 E-value=1.9e-24 Score=222.99 Aligned_cols=260 Identities=15% Similarity=0.212 Sum_probs=187.7
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLF 290 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV 290 (531)
++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|.++..++. .|+++|++++++.++++|
T Consensus 86 ~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v 161 (367)
T 3euc_A 86 MEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMS----AQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIV 161 (367)
T ss_dssp CEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHH----HHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEE
T ss_pred ceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEE
Confidence 5677777777999999999999999999999999986543 4456888887763 389999999986348999
Q ss_pred EEeCCCCCCCcccC---HHHHHHHHHhc--CCEEEEeCCCCCCccc----cccccCCcEEEECCccccccCCCceEEEEE
Q 009604 291 FTESPTNPFLRCVD---VKLVSDLCHKK--GAIVCIDGTFATPLNQ----KALSLGADLVLHSATKFIGGHNDVLAGSIS 361 (531)
Q Consensus 291 ~lesP~NPtG~v~d---l~~I~~la~~~--gi~lIvD~a~a~~~~~----~~l~~gaDivv~S~sK~lgg~g~v~gG~iv 361 (531)
++++|+||||.+++ +++|+++|++| |+++|+|++|+..... .....+.++++.|+||. +..| ..+|+++
T Consensus 162 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G-~r~G~~~ 239 (367)
T 3euc_A 162 YLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAG-IRLGYVA 239 (367)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCS-CCEEEEE
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccc-cCceeee
Confidence 99999999999975 67778889999 9999999998753221 11224566999999999 6555 4478888
Q ss_pred eChHHHHHHHHHhhhcCCCchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhh
Q 009604 362 GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIAT 438 (531)
Q Consensus 362 ~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~---tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~ 438 (531)
+++++++.++.....++ .++...+.+...++ .+..+.++..++++.+.+.|+++|++. + +|.
T Consensus 240 ~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~~~----------- 304 (367)
T 3euc_A 240 GDPQWLEQLDKVRPPYN--VNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVT-V-FPS----------- 304 (367)
T ss_dssp ECHHHHHHHGGGCCSSC--CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCE-E-CCC-----------
T ss_pred eCHHHHHHHHHhCCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCC-----------
Confidence 99998888876554333 44554444444443 356666777788899999999887764 2 332
Q ss_pred hhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHH
Q 009604 439 QQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE 518 (531)
Q Consensus 439 ~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~e 518 (531)
.|+++++.++ ...++.+.|+..++.++.|+.+. +..++.||||++ ++
T Consensus 305 -----~~~~~~~~~~----~~~~l~~~l~~~gi~v~~~~~~~---------------------~~~~~~iRis~~---~~ 351 (367)
T 3euc_A 305 -----AANFLLARVP----DAAQTFDRLLARKVLIKNVSKMH---------------------PLLANCLRVTVS---TP 351 (367)
T ss_dssp -----SSSEEEEECS----CHHHHHHHHHTTTEECEECGGGC---------------------GGGTTEEEEECC---CH
T ss_pred -----CCeEEEEECC----CHHHHHHHHHHCCeEEEECCccC---------------------CCCCCEEEEecC---CH
Confidence 3567888886 23566677766677777664431 012579999999 33
Q ss_pred HHHHHHHHHHH
Q 009604 519 DLKADVLQALH 529 (531)
Q Consensus 519 dli~dL~~AL~ 529 (531)
+.++.+.++|+
T Consensus 352 ~~i~~~~~~l~ 362 (367)
T 3euc_A 352 EENAQFLEAFA 362 (367)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 36
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.93 E-value=4.5e-24 Score=221.41 Aligned_cols=273 Identities=18% Similarity=0.135 Sum_probs=189.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhccCCC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al~~~~ 286 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|.++..++. .|+++|++++++.+
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 160 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVI----EGNGRRVISSDLIYENSKYSVNWADLEEKLATPS 160 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHH----HHTTCEEEECCCEEETTEEECCHHHHHHHHTSTT
T ss_pred HHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHH----HHcCCEEEEeeeeecCCceeecHHHHHHHHhccC
Confidence 567888888899999999999999999999999999866443 445788877765 58999999998335
Q ss_pred cEEEEEeCCCCCCCcc---cCHHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccccC---Cc--EEEECCccccccCC
Q 009604 287 VSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLG---AD--LVLHSATKFIGGHN 353 (531)
Q Consensus 287 tklV~lesP~NPtG~v---~dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~g---aD--ivv~S~sK~lgg~g 353 (531)
+++|++++|+||+|.+ .++++|.++|+++|++||+|++|+.... .....++ .| +++.|+||.++..|
T Consensus 161 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G 240 (391)
T 3dzz_A 161 VRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAA 240 (391)
T ss_dssp EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTT
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccc
Confidence 9999999999999999 5688999999999999999999874321 1122222 46 99999999997555
Q ss_pred CceEEEEEeC-hHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHc-CCCceEEeCC
Q 009604 354 DVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEA-HPKVKRVHYP 426 (531)
Q Consensus 354 ~v~gG~iv~~-~~li~~l~~~~~~~G-~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~-~p~v~~V~~p 426 (531)
. .+|+++++ +++++.++......+ ...++...+.+...++. +..+.++..++++.+.+.|++ .|++. +..|
T Consensus 241 ~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~ 318 (391)
T 3dzz_A 241 L-HAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVK-VLDS 318 (391)
T ss_dssp T-CCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE-ECCC
T ss_pred h-hheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcE-Eecc
Confidence 4 36788876 888888876644322 23333333333333333 556666777888899999988 67763 2222
Q ss_pred CCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCCcccccCCcccccccCccccccCCCHHHHHhcCCCC
Q 009604 427 GLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505 (531)
Q Consensus 427 gl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~ 505 (531)
. .+.++++.++........+.+.| +..++.++.|..+.. ..+
T Consensus 319 ~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~ 361 (391)
T 3dzz_A 319 N----------------ASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRG---------------------NGH 361 (391)
T ss_dssp C----------------BSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCT---------------------TGG
T ss_pred C----------------ceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCC
Confidence 1 23456677753112345666766 356777777754321 024
Q ss_pred CeEEEEecCC--CHHHHHHHHHHHHHh
Q 009604 506 NLVRFSFGVE--DFEDLKADVLQALHA 530 (531)
Q Consensus 506 ~lIRlSvGlE--~~edli~dL~~AL~~ 530 (531)
+.+|||++.. +.++.++.|.+++++
T Consensus 362 ~~iRis~~~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 362 EFVRINLACPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp GEEEEECCSCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 7899999942 223445555555543
No 37
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.93 E-value=4e-24 Score=220.71 Aligned_cols=269 Identities=14% Similarity=0.108 Sum_probs=189.3
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCcEEE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSLF 290 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~~tklV 290 (531)
++++++++|++|+. ++.+++++||+|+++.+.|.+. .+...++..|+++.+++.+ |+++|+++++++++++|
T Consensus 55 ~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v 131 (384)
T 3zrp_A 55 QPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLV 131 (384)
T ss_dssp EEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEE
T ss_pred cEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEE
Confidence 56888888999999 9999999999999999998763 2334557779999888753 89999999987459999
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHH
Q 009604 291 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 369 (531)
Q Consensus 291 ~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~ 369 (531)
++++|+||+|.+.|+++|.++|+++|++||+|++++.+.. ......++|+++.|+||+++++.+ +|++++++++++.
T Consensus 132 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~g~~~~~~~~~~~ 209 (384)
T 3zrp_A 132 ALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAG--LGLLLLSPKALSI 209 (384)
T ss_dssp EEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSS--EEEEEECHHHHHH
T ss_pred EEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCc--eEEEEECHHHHHH
Confidence 9999999999999999999999999999999999876533 233456799999999998865433 6888899988777
Q ss_pred H-------------HHHhh---h----cC---CCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCce
Q 009604 370 I-------------RNLHH---V----LG---GALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPKVK 421 (531)
Q Consensus 370 l-------------~~~~~---~----~G---~~~s~~~a~l~l~~L~t-----l~~r~~~~~~na~~La~~L~~~p~v~ 421 (531)
+ ..+.. . .+ ++.+......+...++. +....++..++++.+.+.|+++ ++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 288 (384)
T 3zrp_A 210 LDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLE 288 (384)
T ss_dssp HHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred hcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence 6 22221 1 00 13333333322233332 3455566677888888888876 432
Q ss_pred EEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhc
Q 009604 422 RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 501 (531)
Q Consensus 422 ~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~ 501 (531)
+..|. +. ...+++++|.+++ .....+.+.|...++.+..|..+.
T Consensus 289 -~~~~~----~~--------~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~--------------------- 332 (384)
T 3zrp_A 289 -IVARR----PE--------SYSNTVTGVILKV--ADPQKVLAGTVNEGVEFAPGVHPA--------------------- 332 (384)
T ss_dssp -BSCSS----GG--------GBCSSEEEEECSS--SCHHHHHHHHHTTTCCCEECCCTT---------------------
T ss_pred -EccCc----cc--------ccCccEEEEECCC--CCHHHHHHHHHHCCEEEecCCCCC---------------------
Confidence 11111 00 1246788999875 345667777766676666553210
Q ss_pred CCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 502 GIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 502 gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
.+.|||+++...+++.++.+.++|+
T Consensus 333 ---~~~iRi~~~~~~~~e~i~~~~~~l~ 357 (384)
T 3zrp_A 333 ---FKYFRIGHMGWVTPNDAIIAISVIE 357 (384)
T ss_dssp ---CCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred ---cCEEEEeccccCCHHHHHHHHHHHH
Confidence 1689999997665555555555543
No 38
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.93 E-value=4.1e-24 Score=226.45 Aligned_cols=270 Identities=15% Similarity=0.139 Sum_probs=200.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCC---CcEEE
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN---NVSLF 290 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~---~tklV 290 (531)
|.+++++++||++|+..++.+++++||+|+++.+.|.++...+ +..|.++..++..|+++|++++++. ++++|
T Consensus 123 g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~----~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v 198 (427)
T 2w8t_A 123 GTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGC----QQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLV 198 (427)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHH----HHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEE
T ss_pred CCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHH----HHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEE
Confidence 7789999999999999999999999999999999998866443 3458888888989999999999762 48999
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc---------cccccCCcEEEECCccccccCCCceEEEEE
Q 009604 291 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLHSATKFIGGHNDVLAGSIS 361 (531)
Q Consensus 291 ~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~---------~~l~~gaDivv~S~sK~lgg~g~v~gG~iv 361 (531)
++++|+||+|.+.|+++|.++|+++|++||+|++|+.+... -.+..++|+++.|++|+++.. ||+++
T Consensus 199 ~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~----gG~v~ 274 (427)
T 2w8t_A 199 VLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTV----GGFVV 274 (427)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSC----CEEEE
T ss_pred EEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccC----CCEEE
Confidence 99999999999999999999999999999999998765321 011225799999999999854 59999
Q ss_pred eChHHHHHHHHHh--hhcCCCchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhh
Q 009604 362 GSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 436 (531)
Q Consensus 362 ~~~~li~~l~~~~--~~~G~~~s~~~a~l~l~~L~tl---~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l 436 (531)
+++++++.+.... ..++...++..+..+...++.+ ..+.++..++++.+.+.|++. ++. +..+.
T Consensus 275 ~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~--------- 343 (427)
T 2w8t_A 275 SNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFR-LGTET--------- 343 (427)
T ss_dssp ECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TCE-ESCSS---------
T ss_pred eCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCC---------
Confidence 9988887766532 2334556666655555566655 556677778888888888875 332 21111
Q ss_pred hhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC
Q 009604 437 ATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED 516 (531)
Q Consensus 437 ~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~ 516 (531)
+.|++++|.+++ .....+|.+.|...++.+..|..... + ...+.|||+++..+
T Consensus 344 ------~~~~~~~~~~~~-~~~~~~l~~~L~~~Gi~v~~~~~~~~------------~--------~~~~~lRi~~~~~~ 396 (427)
T 2w8t_A 344 ------CDSAIVAVMLED-QEQAAMMWQALLDGGLYVNMARPPAT------------P--------AGTFLLRCSICAEH 396 (427)
T ss_dssp ------CCSSEEEEEESS-HHHHHHHHHHHHHTTEECEEECTTTS------------C--------TTCEEEEEECCTTC
T ss_pred ------CCCCEEEEEECC-HHHHHHHHHHHHHCCeEEeeeCCCCC------------C--------CCCeEEEEEeCCCC
Confidence 135789999964 34567777777655666665532210 0 12468999999877
Q ss_pred HHHHHHHHHHHHH
Q 009604 517 FEDLKADVLQALH 529 (531)
Q Consensus 517 ~edli~dL~~AL~ 529 (531)
+++.++.+.++|+
T Consensus 397 t~e~i~~~~~~l~ 409 (427)
T 2w8t_A 397 TPAQIQTVLGMFQ 409 (427)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666654
No 39
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.93 E-value=5.4e-24 Score=221.97 Aligned_cols=252 Identities=13% Similarity=0.132 Sum_probs=177.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccCCCc
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNNNV 287 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~~~~t 287 (531)
.++++++++|++|+.+++.+++++||+|+++.|+|.+.... ++..|+++..++. .|+++|+++++++ +
T Consensus 91 ~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~ 165 (385)
T 1b5p_A 91 PEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEM----VRFAGGVVVEVETLPEEGFVPDPERVRRAITPR-T 165 (385)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTT-E
T ss_pred hHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHcCCEEEEeecCcccCCCCCHHHHHHhcCCC-C
Confidence 46778888888999999999999999999999999875543 3456888777764 3789999999874 9
Q ss_pred EEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc----cccccc--CCcEEEECCccccccCCCceEE
Q 009604 288 SLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL--GADLVLHSATKFIGGHNDVLAG 358 (531)
Q Consensus 288 klV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~----~~~l~~--gaDivv~S~sK~lgg~g~v~gG 358 (531)
++|++++|+||||.+++ +++|+++|+++|++||+|++|+.... .....+ +.++++.|+||.++.+|.+ .|
T Consensus 166 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R-iG 244 (385)
T 1b5p_A 166 KALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWR-IG 244 (385)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGC-CE
T ss_pred EEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccc-eE
Confidence 99999999999999977 88999999999999999999875432 111222 5689999999999876643 78
Q ss_pred EEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCC
Q 009604 359 SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-------KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSH 431 (531)
Q Consensus 359 ~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L-------~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~ 431 (531)
++++++++++.++..........+....+.+...+ +.+....++..++++.+.+.|+++ ++. +..|.
T Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---- 318 (385)
T 1b5p_A 245 YACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLK-AVRPS---- 318 (385)
T ss_dssp EEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-BCCCS----
T ss_pred EEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCC----
Confidence 88899999888877654433344444433333333 234444555667777888888765 332 11111
Q ss_pred chhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE
Q 009604 432 PEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS 511 (531)
Q Consensus 432 p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlS 511 (531)
.+..+++.++.......+|.+.|...++.+..|..+ +. ++.+|||
T Consensus 319 ------------~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f----------------------~~-~~~iRis 363 (385)
T 1b5p_A 319 ------------GAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDF----------------------AA-FGHVRLS 363 (385)
T ss_dssp ------------BTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGG----------------------TC-TTEEEEE
T ss_pred ------------eeEEEEEecCCCCCCHHHHHHHHHHCCeEEeccccc----------------------CC-CCeEEEE
Confidence 234566676521023456666665557666666432 11 4689999
Q ss_pred ec
Q 009604 512 FG 513 (531)
Q Consensus 512 vG 513 (531)
++
T Consensus 364 ~~ 365 (385)
T 1b5p_A 364 YA 365 (385)
T ss_dssp CC
T ss_pred ec
Confidence 99
No 40
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.93 E-value=1.2e-23 Score=219.64 Aligned_cols=267 Identities=13% Similarity=0.137 Sum_probs=193.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCC---CcEEE
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN---NVSLF 290 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~---~tklV 290 (531)
|.++++++++|++|+.+++.+++++||+|+++.+.|+.+... ++..|.++..++..|+++|++++++. ++++|
T Consensus 102 g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~----~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v 177 (398)
T 3a2b_A 102 GKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDG----SRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLI 177 (398)
T ss_dssp TCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHH----HHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEE
T ss_pred CCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHH----HHHcCCceEEeCCCCHHHHHHHHHhhccCCceEE
Confidence 778899999999999999999999999999999999987644 34468899899988999999999762 48999
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc----ccccc-c----CCcEEEECCccccccCCCceEEEEE
Q 009604 291 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS-L----GADLVLHSATKFIGGHNDVLAGSIS 361 (531)
Q Consensus 291 ~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~----~~~l~-~----gaDivv~S~sK~lgg~g~v~gG~iv 361 (531)
++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. ..... . ++|+++.|+||.+++.| |+++
T Consensus 178 ~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G----G~~~ 253 (398)
T 3a2b_A 178 CTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG----GFVA 253 (398)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC----EEEE
T ss_pred EEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC----cEEE
Confidence 9999999999999999999999999999999999976532 11111 1 26999999999999654 8999
Q ss_pred eChHHHHHHHHHh--hhcCCCchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhh
Q 009604 362 GSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 436 (531)
Q Consensus 362 ~~~~li~~l~~~~--~~~G~~~s~~~a~l~l~~L~tl---~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l 436 (531)
+++++++.++... .......++..+..+...++.+ ..+.++..++++.+.+.|++. ++. + ++
T Consensus 254 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~---------- 320 (398)
T 3a2b_A 254 GDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFD-L-GA---------- 320 (398)
T ss_dssp ECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TCC-B-CS----------
T ss_pred eCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CCC-c-CC----------
Confidence 9999988887642 2223334444333333344333 345566677888888888875 331 1 11
Q ss_pred hhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC
Q 009604 437 ATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED 516 (531)
Q Consensus 437 ~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~ 516 (531)
..|+++++.++. ......+.+.|...++.+..|..+.. + ..++.|||+++...
T Consensus 321 ------~~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~---~-----------------~~~~~iRis~~~~~ 373 (398)
T 3a2b_A 321 ------TESPILPIFIRS-NEKTFWVTKMLQDDGVFVNPVVSPAV---P-----------------AEESLIRFSLMATH 373 (398)
T ss_dssp ------CCSSEEEEECCC-HHHHHHHHHHHHHTTEECEEECTTTS---C-----------------GGGCEEEEECCTTC
T ss_pred ------CCCCEEEEEcCC-HHHHHHHHHHHHHCCcEEEeeCCCCC---C-----------------CCCceEEEEEeCCC
Confidence 125788998863 24566777777655777666543211 0 02478999999755
Q ss_pred HHHHHHHHHHHH
Q 009604 517 FEDLKADVLQAL 528 (531)
Q Consensus 517 ~edli~dL~~AL 528 (531)
+++.++.+.++|
T Consensus 374 ~~e~i~~~~~~l 385 (398)
T 3a2b_A 374 TYDQIDEAIEKM 385 (398)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 554444444444
No 41
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.93 E-value=1.8e-24 Score=225.43 Aligned_cols=283 Identities=13% Similarity=0.131 Sum_probs=184.1
Q ss_pred CcEEEeCChHHHHHHHHHHhc----cCCC-EEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCC
Q 009604 216 ESTVIMASGMSASTVMLLALV----PAGG-HIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNN 285 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all----~pGD-~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~ 285 (531)
++++++++|++|+.+++.+++ ++|| +|+++.++|+++...+.. +...|+++.+++.+ |+++|+++++++
T Consensus 81 ~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 159 (400)
T 3vax_A 81 DELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEH-LAGRGFEVDFLTPGPSGRISVEGVMERLRPD 159 (400)
T ss_dssp GGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHH-HHTTTCEEEEECCCTTCCCCHHHHHTTCCTT
T ss_pred CcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHH-HHhcCCeEEEEccCCCCCcCHHHHHHhcCCC
Confidence 578888888999999999988 8999 999999999987766643 45679999988754 899999999874
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEE-eC
Q 009604 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSIS-GS 363 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv-~~ 363 (531)
+++|++++|+||+|.+.|+++|.++|+++|++||+|++++.+.. ...... +|+++.|+||++++.| .|+++ .+
T Consensus 160 -~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g---~g~~~~~~ 234 (400)
T 3vax_A 160 -TLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKG---VGALVTRR 234 (400)
T ss_dssp -EEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSS---CEEEEECB
T ss_pred -ceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCc---eEEEEEec
Confidence 99999999999999999999999999999999999999976543 222234 8999999999776554 35555 54
Q ss_pred h-HHH---HHHHHHh-------hhcCCCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCC
Q 009604 364 G-KLV---TQIRNLH-------HVLGGALNPNAAYLIIRGMKTL----HLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 428 (531)
Q Consensus 364 ~-~li---~~l~~~~-------~~~G~~~s~~~a~l~l~~L~tl----~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl 428 (531)
+ ++. ..+.... .....+.+....+.+..+++.+ ....++..++++.+.+.|+ .+++. +..|.-
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~-~~~~~~ 312 (400)
T 3vax_A 235 REEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSFQ-VNGDQD 312 (400)
T ss_dssp CSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTCE-ECSCTT
T ss_pred chhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCEE-EeCCcc
Confidence 4 111 1111111 1112333444443333444433 3444555667777777777 66553 222210
Q ss_pred CCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCC----
Q 009604 429 KSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM---- 504 (531)
Q Consensus 429 ~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~---- 504 (531)
...++++.|.+++ .....+.+.|. .++.++.|..++....+ +......+|+.
T Consensus 313 -------------~~~~~~~~~~~~~--~~~~~l~~~L~-~gi~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~ 368 (400)
T 3vax_A 313 -------------HVVPHILNLSFED--VDAEAFLVTLK-DLVAVATGSASTSASFT--------PSHVLRAMGLPEEAA 368 (400)
T ss_dssp -------------SBCTTEEEEECTT--CCHHHHHHHHH-HHHHHTTTTEEEEEEEC--------CHHHHHTTTCCHHHH
T ss_pred -------------cCCCCEEEEEeCC--CCHHHHHHHHh-cCcEEEecccccCCCCC--------ccHHHHHcCCCcccc
Confidence 1246789998875 24566778887 88888988765432111 11223344554
Q ss_pred CCeEEEEe-cCCCHHHHHHHHHHHHHh
Q 009604 505 DNLVRFSF-GVEDFEDLKADVLQALHA 530 (531)
Q Consensus 505 ~~lIRlSv-GlE~~edli~dL~~AL~~ 530 (531)
++.||||+ |...+++.++.+.++|++
T Consensus 369 ~~~iRls~~~~~~t~e~i~~~~~~l~~ 395 (400)
T 3vax_A 369 SKSLRFSWTPGQATDLDVEELARGVAK 395 (400)
T ss_dssp TSEEEEEEEEC----------------
T ss_pred CceEEEEccCCCCCHHHHHHHHHHHHH
Confidence 48999999 976666666666665543
No 42
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.93 E-value=4.7e-24 Score=220.88 Aligned_cols=271 Identities=15% Similarity=0.102 Sum_probs=195.0
Q ss_pred CcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccCCCc
Q 009604 216 ESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNNNV 287 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~~~~t 287 (531)
++++++++|++|+.+++.++ +++||+|+++.+.|.+....+....+..|+++..++. .|+++|++++++ ++
T Consensus 77 ~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~ 155 (390)
T 1elu_A 77 NTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-KT 155 (390)
T ss_dssp GGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-TE
T ss_pred HHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-Cc
Confidence 47888999999999999999 8999999999999998765554444556888888875 268999999987 49
Q ss_pred EEEEEeCCCCCCCcccCHHHHHHHHH----hcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEe
Q 009604 288 SLFFTESPTNPFLRCVDVKLVSDLCH----KKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISG 362 (531)
Q Consensus 288 klV~lesP~NPtG~v~dl~~I~~la~----~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~ 362 (531)
++|++++|+||+|.+.|+++|.++|+ ++|+++|+|++|+.+.. ......+.|+++.|++|++.++.+ .|++++
T Consensus 156 ~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~ 233 (390)
T 1elu_A 156 RLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAG--VGGLYI 233 (390)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTT--CEEEEE
T ss_pred eEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCc--eEEEEE
Confidence 99999999999999999999999999 99999999999875422 122245789999999995444332 588888
Q ss_pred ChHHHHHHHHHh----------------------hhcCCCchHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 009604 363 SGKLVTQIRNLH----------------------HVLGGALNPNAAY---LIIRGMKT---LHLRVQQQNSTALRMAKIL 414 (531)
Q Consensus 363 ~~~li~~l~~~~----------------------~~~G~~~s~~~a~---l~l~~L~t---l~~r~~~~~~na~~La~~L 414 (531)
++++++.++... ....++.+..... .++..++. +....++..++++.+.+.|
T Consensus 234 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L 313 (390)
T 1elu_A 234 HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGL 313 (390)
T ss_dssp CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 887776654311 1111233333322 22233323 4556677778889999999
Q ss_pred HcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCC
Q 009604 415 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS 494 (531)
Q Consensus 415 ~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~ 494 (531)
++.+++. +..|. .+.|+++.|+++.+ ....++.+.|...++.+..|+
T Consensus 314 ~~~~g~~-~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~----------------- 360 (390)
T 1elu_A 314 NQLPHVH-CLATS--------------APQAGLVSFTVDSP-LGHRAIVQKLEEQRIYLRTIA----------------- 360 (390)
T ss_dssp HHSTTEE-ESCSS--------------CCSSSEEEEEECSS-SCHHHHHHHHHHTTEECEEET-----------------
T ss_pred HhcCCcE-EecCc--------------cccccEEEEEcCCC-CCHHHHHHHHHHCCEEEEecC-----------------
Confidence 8877653 33221 12467899998522 234456666654455554431
Q ss_pred HHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 495 QSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 495 ~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
.++.||||++...+++.++.+.++|+++
T Consensus 361 ---------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 361 ---------DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp ---------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred ---------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 1478999999888888899999888753
No 43
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.92 E-value=4.7e-24 Score=220.30 Aligned_cols=284 Identities=14% Similarity=0.125 Sum_probs=189.5
Q ss_pred CcEEEeCChHHHHHHHHHHhc----cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCC
Q 009604 216 ESTVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNN 286 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all----~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~ 286 (531)
++++++++|++|+.+++.++. ++||+|+++.++|.+....+. .+...|+++.+++. .|+++|++++++ +
T Consensus 61 ~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~ 138 (382)
T 4eb5_A 61 GTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-D 138 (382)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-T
T ss_pred CeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHH-HHHhCCcEEEEeccCCCCccCHHHHHHHhcC-C
Confidence 467888888999999999988 899999999999988766553 34557899888875 489999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChH
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 365 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~ 365 (531)
+++|++++|+||||.+.|+++|.++|+++|++ |+|++|+.+.. .....+++|+++.|+||++++.| .|+++.+++
T Consensus 139 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g---~G~~~~~~~ 214 (382)
T 4eb5_A 139 TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG---VGALWIRKE 214 (382)
T ss_dssp EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSS---CEEEEEETT
T ss_pred CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCc---eEEEEEccc
Confidence 99999999999999999999999999999999 99999874322 12223478999999999977655 356665554
Q ss_pred H-HHHHHH----HhhhcCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhh
Q 009604 366 L-VTQIRN----LHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 436 (531)
Q Consensus 366 l-i~~l~~----~~~~~G~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l 436 (531)
. +..+.. .......+.+....+.+...++. +..+.++..++++.+.+.|++.|++. +..|. .
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~-----~--- 285 (382)
T 4eb5_A 215 AKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESY-LNGHP-----E--- 285 (382)
T ss_dssp CCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-ECSCS-----S---
T ss_pred cccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeE-EeCCc-----c---
Confidence 2 111100 01111123333332222223332 34555666778888888888776653 22221 0
Q ss_pred hhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCC----CCeEEEEe
Q 009604 437 ATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM----DNLVRFSF 512 (531)
Q Consensus 437 ~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~----~~lIRlSv 512 (531)
...+++++|.+++ .....|.+.|...++.+..|..++...+ .+......+|++ ++.|||++
T Consensus 286 -----~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~--------~~~~~~~~~g~~~~~~~~~iRi~~ 350 (382)
T 4eb5_A 286 -----KRLPNNVNVRFSY--IEGESIVLSLDMAGIQASTGSACSSKTL--------QPSHVLMACGLKHEEAHGTLLLTL 350 (382)
T ss_dssp -----SBCTTEEEEEETT--SCHHHHHHHHHHHTCBCBCCCGGGTSSC--------CCCHHHHHTTCCHHHHTTEEEEEC
T ss_pred -----cCCCCEEEEEeCC--cCHHHHHHHHHHCCEEEeccccccCCCC--------cccHHHHHcCCChhccCCeEEEEC
Confidence 0136788999874 2345566666556777777765432110 011223344543 67999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 009604 513 GVEDFEDLKADVLQALH 529 (531)
Q Consensus 513 GlE~~edli~dL~~AL~ 529 (531)
+...+++.++.+.++|+
T Consensus 351 ~~~~~~~~i~~~~~~l~ 367 (382)
T 4eb5_A 351 GRYNTDEDVDRLLEVLP 367 (382)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 97665555555555543
No 44
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.92 E-value=4.1e-24 Score=219.23 Aligned_cols=262 Identities=15% Similarity=0.169 Sum_probs=189.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccC-CCcE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNN-NNVS 288 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~-~~tk 288 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|+++.+++.+ |+++|++++++ .+++
T Consensus 68 ~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 143 (354)
T 3ly1_A 68 APSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHF----AKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPS 143 (354)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCE
T ss_pred hHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHH----HHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCC
Confidence 46788888888999999999999999999999999986543 44568898888866 89999999982 2599
Q ss_pred EEEEeCCCCCCCcccCHHHHHHHHHh--cCCEEEEeCCCCCCccc----ccc----cc-CCcEEEECCccccccCCCceE
Q 009604 289 LFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----SL-GADLVLHSATKFIGGHNDVLA 357 (531)
Q Consensus 289 lV~lesP~NPtG~v~dl~~I~~la~~--~gi~lIvD~a~a~~~~~----~~l----~~-gaDivv~S~sK~lgg~g~v~g 357 (531)
+|++++|+||||.+.|++++.++++. +|+++|+|++|+..... ... .. +.++++.|+||.++..| ...
T Consensus 144 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~ 222 (354)
T 3ly1_A 144 IVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG-MRV 222 (354)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG-GCC
T ss_pred EEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh-hhh
Confidence 99999999999999999988888887 99999999998743221 111 12 56799999999997554 346
Q ss_pred EEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchh
Q 009604 358 GSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 434 (531)
Q Consensus 358 G~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L---~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~ 434 (531)
|++++++++++.++.....+ ..++...+.+...+ +.+..+.++..++++.+.+.|+++ ++.. +|.
T Consensus 223 G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~--~~~------- 290 (354)
T 3ly1_A 223 GYAVAHPTVIALMGRYVAGE--KINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPY--LPS------- 290 (354)
T ss_dssp EEEECCHHHHHHHGGGTTCS--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCB--CCC-------
T ss_pred eeeecCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeE--CCC-------
Confidence 88889999988887765543 34554444444333 345566677778888888888875 3321 121
Q ss_pred hhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009604 435 HIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV 514 (531)
Q Consensus 435 ~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGl 514 (531)
.|+++++.++++ ...+.+.|...++.++ |..+. .++.||||++-
T Consensus 291 ---------~~~~~~~~~~~~---~~~~~~~l~~~gi~v~-g~~~~-----------------------~~~~iRis~~~ 334 (354)
T 3ly1_A 291 ---------EGNFVFHQLVVP---LKDYQTHMADAGVLIG-RAFPP-----------------------ADNWCRISLGT 334 (354)
T ss_dssp ---------CSSEEEEECSSC---HHHHHHHHHHTTEECC-CCCTT-----------------------CTTEEEEECCC
T ss_pred ---------CceEEEEECCCC---HHHHHHHHHHCCEEEe-ecCCC-----------------------CCCEEEEEcCC
Confidence 366788888753 3455666655566666 53210 25789999984
Q ss_pred C-CHHHHHHHHHHHHH
Q 009604 515 E-DFEDLKADVLQALH 529 (531)
Q Consensus 515 E-~~edli~dL~~AL~ 529 (531)
+ +.+.+++.|.++++
T Consensus 335 ~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 335 PQEMQWVADTMREFRK 350 (354)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2 34555555555554
No 45
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.92 E-value=7.2e-24 Score=219.21 Aligned_cols=262 Identities=15% Similarity=0.203 Sum_probs=187.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 294 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~les 294 (531)
.++++++++|++|+.+++.+++++||+|+++.++|.+.... ++..|.++..++ .|+++|++++++ ++++|++++
T Consensus 89 ~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~-~d~~~l~~~l~~-~~~~v~~~~ 162 (370)
T 2z61_A 89 PDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNF----IRFLGAKPVFCD-FTVESLEEALSD-KTKAIIINS 162 (370)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEEC-SSHHHHHHHCCS-SEEEEEEES
T ss_pred hhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeC-CCHHHHHHhccc-CceEEEEcC
Confidence 46788999999999999999999999999999999986543 345688888888 789999999987 499999999
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc----ccccc----cCCcEEEECCccccccCCCceEEEEEeChHH
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKL 366 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~----~~~l~----~gaDivv~S~sK~lgg~g~v~gG~iv~~~~l 366 (531)
|+||+|.+.|++ |.++|+++|++||+|++|..+.. ..... .+.|+++.|+||.++.+|. ..|++++++++
T Consensus 163 p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~ 240 (370)
T 2z61_A 163 PSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGW-RIGYVISNDEI 240 (370)
T ss_dssp SCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGG-CCEEEECCHHH
T ss_pred CCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccc-eEEEEEECHHH
Confidence 999999999999 99999999999999999875432 12222 3678999999999975553 46899999999
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhc
Q 009604 367 VTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 441 (531)
Q Consensus 367 i~~l~~~~~~~G~~~s~~~a~l~l~~L~-----tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~ 441 (531)
++.++........+.++...+.+...++ .+....++..++++.+.+.|+++ ++. +..|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-------------- 304 (370)
T 2z61_A 241 IEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWE-VNNPI-------------- 304 (370)
T ss_dssp HHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCB-CCCCC--------------
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCe-ecCCC--------------
Confidence 9888876655544556655554444443 23444555667788888888876 332 11111
Q ss_pred CCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 009604 442 TGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL 520 (531)
Q Consensus 442 ~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edl 520 (531)
.|.+++++++. ....+.+.|. ..++.+..|..+.. -.++.+|||++. +++.
T Consensus 305 --~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~---------------------~~~~~~Ri~~~~--~~~~ 356 (370)
T 2z61_A 305 --GAYYVFPNIGE---DGREFAYKLLKEKFVALTPGIGFGS---------------------KGKNYIRISYAN--SYEN 356 (370)
T ss_dssp --BTTEECCBCSS---CHHHHHHHHHHHHCEECEEGGGGCG---------------------GGSSBEEEECCS--CHHH
T ss_pred --cceEEEEecCC---CHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEEEEeC--CHHH
Confidence 24466777753 2345666663 45666666543310 025789999993 3333
Q ss_pred HHHHHHHH
Q 009604 521 KADVLQAL 528 (531)
Q Consensus 521 i~dL~~AL 528 (531)
++.+.++|
T Consensus 357 i~~~~~~l 364 (370)
T 2z61_A 357 IKEGLERI 364 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 46
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.92 E-value=1.1e-23 Score=221.27 Aligned_cols=267 Identities=13% Similarity=0.113 Sum_probs=193.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEe
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTE 293 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~le 293 (531)
+.+..+++++|++|+..++.+++++||+|+++.+.|.++...+ ...|.++..++..|+++|+++++++++++|+++
T Consensus 118 g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~ 193 (409)
T 3kki_A 118 GFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGA----RYANAQAHPFMHNNCDHLRMLIQRHGPGIIVVD 193 (409)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHH----HHTTCEEEEECTTCHHHHHHHHHHHCSCEEEEE
T ss_pred CCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHH----HHcCCeEEEecCCCHHHHHHHHHhcCCeEEEEC
Confidence 4567899999999999999999999999999999998876443 345888888888899999999975448999999
Q ss_pred CCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc-------cc--cccCCcEEEECCccccccCCCceEEEEEeCh
Q 009604 294 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KA--LSLGADLVLHSATKFIGGHNDVLAGSISGSG 364 (531)
Q Consensus 294 sP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~-------~~--l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~ 364 (531)
+|+||+|.+.|+++|.++|+++|++||+|++|+.+... .. ...++|+++.|++|.+++. +|++++++
T Consensus 194 ~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~----gg~v~~~~ 269 (409)
T 3kki_A 194 SIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR----AGAIWCNN 269 (409)
T ss_dssp SBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS----CEEEEESS
T ss_pred CCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC----ceEEEECH
Confidence 99999999999999999999999999999998753221 01 1125789999999999876 58999998
Q ss_pred HHHHHHHHHh--hhcCCCchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhh
Q 009604 365 KLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 439 (531)
Q Consensus 365 ~li~~l~~~~--~~~G~~~s~~~a~l~l~~L~tl---~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~ 439 (531)
++++.++... ..++...++..+..+...++.+ ....++..++++.+.+.|++.. + ..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~---~~~------------- 332 (409)
T 3kki_A 270 EVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG-L---TIR------------- 332 (409)
T ss_dssp SGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT-C---CCC-------------
T ss_pred HHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-C---ccC-------------
Confidence 8877766532 2344445665554444455444 3445566677888888888652 1 111
Q ss_pred hcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHH
Q 009604 440 QMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 519 (531)
Q Consensus 440 ~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~ed 519 (531)
+.++++++.++. .....+|.+.|...++.+..+.. |.. ...++.|||+++...+++
T Consensus 333 ---~~~~~~~~~~~~-~~~~~~~~~~L~~~Gv~v~~~~~------~~~--------------~~~~~~iRi~~~~~~t~e 388 (409)
T 3kki_A 333 ---SESQIIGLETGD-ERNTEKVRDYLESNGVFGSVFCR------PAT--------------SKNKNIIRLSLNSDVNDE 388 (409)
T ss_dssp ---CSSSEEEEEEES-HHHHHHHHHHHHHTTEECEEECT------TSS--------------CTTCEEEEEECCTTCCHH
T ss_pred ---CCCCEEEEEeCC-HHHHHHHHHHHHHCCceEeeeCC------CCc--------------CCCCcEEEEEccCCCCHH
Confidence 146789999864 34556677777554555443211 110 013578999999876666
Q ss_pred HHHHHHHHHH
Q 009604 520 LKADVLQALH 529 (531)
Q Consensus 520 li~dL~~AL~ 529 (531)
.++.+.++|+
T Consensus 389 ~i~~~~~~l~ 398 (409)
T 3kki_A 389 QIAKIIEVCS 398 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 47
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.92 E-value=2.6e-24 Score=221.66 Aligned_cols=265 Identities=14% Similarity=0.166 Sum_probs=189.7
Q ss_pred cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC--CC-----CHHHHHHhcc-----C
Q 009604 217 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--PA-----DMEGLEAALN-----N 284 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd--~~-----d~e~Le~al~-----~ 284 (531)
.++++++|++|+.+++.+++++||+|+++.++|.+.... ++..|+++..++ .+ |+++|+++++ +
T Consensus 71 ~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 146 (371)
T 2e7j_A 71 VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRG 146 (371)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTS
T ss_pred EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHH----HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccC
Confidence 456666668999999999999999999999999987644 445688888888 54 7999999997 5
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeC
Q 009604 285 NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGS 363 (531)
Q Consensus 285 ~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~ 363 (531)
++++|++++|+||+|.+.|+++|.++|+++|++||+|++|+.+.. .....+++|+++.|+||+++++. .+|+++++
T Consensus 147 -~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~--~~G~~~~~ 223 (371)
T 2e7j_A 147 -EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASG--PIGVMGMK 223 (371)
T ss_dssp -CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCS--SCEEEEEC
T ss_pred -CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCC--CcEEEEEe
Confidence 499999999999999999999999999999999999999887543 33445678999999999888764 36899998
Q ss_pred hHHHHH-HHHHhh--hc-----CCCchHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHcCCCceEEeCCCCCCCc
Q 009604 364 GKLVTQ-IRNLHH--VL-----GGALNPNAAYLIIRGMKTLH-LRVQQQ--NSTALRMAKILEAHPKVKRVHYPGLKSHP 432 (531)
Q Consensus 364 ~~li~~-l~~~~~--~~-----G~~~s~~~a~l~l~~L~tl~-~r~~~~--~~na~~La~~L~~~p~v~~V~~pgl~s~p 432 (531)
+++++. ++.... .. ..+.++...+.+...++.+. ...++. .++++.+.+.|+++ ++. +..|.-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~---- 297 (371)
T 2e7j_A 224 EEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKL-GIK-QLGDNP---- 297 (371)
T ss_dssp TTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHT-TCE-EESSSS----
T ss_pred chhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcE-EecCCC----
Confidence 887776 654332 11 23334443443344555444 334555 67888899999876 543 222210
Q ss_pred hhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhc---CCCCCeEE
Q 009604 433 EHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY---GIMDNLVR 509 (531)
Q Consensus 433 ~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~---gi~~~lIR 509 (531)
+.+++++|.++ ...++.+.|...++.+.. .. ... |..++.||
T Consensus 298 ----------~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-~~--------------------~~~~~~g~~~~~iR 342 (371)
T 2e7j_A 298 ----------HNHDLMFFHAE----VLYEISKKAKGGRFFLYR-EL--------------------KSRKIHGIKPGLTR 342 (371)
T ss_dssp ----------CCSSEEEEECH----HHHHHHHHSSSGGGHHHH-HH--------------------HHTTEECSCTTCCS
T ss_pred ----------ccCceEEEECC----CHHHHHHHHHHCCEEEEe-cc--------------------ccccccCCCCCceE
Confidence 12568999885 456788888765544432 00 011 33467899
Q ss_pred -EEecCC-CHHHHHHHHHHHHH
Q 009604 510 -FSFGVE-DFEDLKADVLQALH 529 (531)
Q Consensus 510 -lSvGlE-~~edli~dL~~AL~ 529 (531)
|+++.. .+++.++.+.++|+
T Consensus 343 ii~~~~~~~~~~~i~~~~~~l~ 364 (371)
T 2e7j_A 343 YFKLSTYGLSDEEVDYVLNAFK 364 (371)
T ss_dssp EEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEeeccCCCHHHHHHHHHHHH
Confidence 999987 66666666666554
No 48
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.92 E-value=2.5e-23 Score=215.01 Aligned_cols=258 Identities=15% Similarity=0.188 Sum_probs=183.5
Q ss_pred CcEEEeCChHHHHHHHHHHhccCC-CEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSL 289 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pG-D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tkl 289 (531)
++++++++|++++.+++.+++++| |+|+++.++|.+....+ +..|.++..++. .|+++|+++++ ++++
T Consensus 76 ~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~i~--~~~~ 149 (356)
T 1fg7_A 76 EQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSA----ETIGVECRTVPTLDNWQLDLQGISDKLD--GVKV 149 (356)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHH----HHHTCEEEECCCCTTSCCCHHHHHTSCT--TEEE
T ss_pred HHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHH----HHcCCEEEEeeCCCCCCCCHHHHHHHhc--CCCE
Confidence 456666666799999999999999 99999999999865443 345778777764 37899999987 4999
Q ss_pred EEEeCCCCCCCcccCHHHHH---HHHHhcCCEEEEeCCCCCCcc-cccc----ccCCcEEEECCccccccCCCceEEEEE
Q 009604 290 FFTESPTNPFLRCVDVKLVS---DLCHKKGAIVCIDGTFATPLN-QKAL----SLGADLVLHSATKFIGGHNDVLAGSIS 361 (531)
Q Consensus 290 V~lesP~NPtG~v~dl~~I~---~la~~~gi~lIvD~a~a~~~~-~~~l----~~gaDivv~S~sK~lgg~g~v~gG~iv 361 (531)
|++++|+||||.+.+.++|. ++|+ +|++||+||+|..... .... ..+.++++.|+||.++.+|. ..|+++
T Consensus 150 v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~ 227 (356)
T 1fg7_A 150 VYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGL-RCGFTL 227 (356)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGG-CCEEEE
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchh-hhEEEE
Confidence 99999999999999866555 5555 8999999999875431 1111 23568999999999986653 368888
Q ss_pred eChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhh
Q 009604 362 GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 436 (531)
Q Consensus 362 ~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t-----l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l 436 (531)
+++++++.++.....+ ..++...+.+...++. +..+.++..++++.+.+.|++++.+.. ..|.
T Consensus 228 ~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~--------- 295 (356)
T 1fg7_A 228 ANEEVINLLMKVIAPY--PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQ-VFDS--------- 295 (356)
T ss_dssp ECHHHHHHHHHHSCSS--CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE-ECCC---------
T ss_pred eCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE-ECCC---------
Confidence 8999988887765444 3445444444444432 455556667788889999988765422 2332
Q ss_pred hhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCccccc-CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC
Q 009604 437 ATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF-GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE 515 (531)
Q Consensus 437 ~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~-Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE 515 (531)
.|+++++.++ + ..++.+.|...++.+.. |..+ |. ++.+|||++.
T Consensus 296 -------~~~~~~~~~~-~---~~~l~~~L~~~gI~v~~~g~~~----------------------~~-~~~iRis~~~- 340 (356)
T 1fg7_A 296 -------ETNYILARFK-A---SSAVFKSLWDQGIILRDQNKQP----------------------SL-SGCLRITVGT- 340 (356)
T ss_dssp -------SSSEEEEEET-T---HHHHHHHHHHTTEECEECTTST----------------------TC-TTEEEEECCC-
T ss_pred -------CCeEEEEECC-C---HHHHHHHHHHCCEEEEECCCCC----------------------CC-CCeEEEEeCC-
Confidence 3678888886 2 34566666555666665 4321 11 4689999983
Q ss_pred CHHHHHHHHHHHHHh
Q 009604 516 DFEDLKADVLQALHA 530 (531)
Q Consensus 516 ~~edli~dL~~AL~~ 530 (531)
++.++.+.++|++
T Consensus 341 --~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 341 --REESQRVIDALRA 353 (356)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHh
Confidence 5667778788765
No 49
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.92 E-value=1.5e-24 Score=224.77 Aligned_cols=287 Identities=14% Similarity=0.148 Sum_probs=200.6
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHHhccCCC
Q 009604 214 GAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEAALNNNN 286 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~al~~~~ 286 (531)
+.+++++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|+++.+++.+ |+++|++++++ +
T Consensus 50 ~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~-~ 124 (373)
T 3frk_A 50 NVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAV----SYTGAKPIFVEPDIRTYNIDPSLIESAITE-K 124 (373)
T ss_dssp TSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHH----HHHSCEEEEECEETTTTEECGGGTGGGCCT-T
T ss_pred CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEeccccccCcCHHHHHHhcCC-C
Confidence 5568999999999999999999 999999999999999976543 3458888887754 88999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccC--CcEEEECCc--cccccCCCceEEEEEe
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--KFIGGHNDVLAGSISG 362 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g--aDivv~S~s--K~lgg~g~v~gG~iv~ 362 (531)
+++|+ |+||+|.+.|+++|.++|+++|++||+|++++.+........| .|+++.|++ |++++++. +|++++
T Consensus 125 ~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~ 199 (373)
T 3frk_A 125 TKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVT 199 (373)
T ss_dssp EEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEE
T ss_pred CeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCCCccCccce--eEEEEe
Confidence 99988 6889999999999999999999999999999876544333444 899999966 99988553 788887
Q ss_pred C-hHHHHHHHHHhhh------------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 363 S-GKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 363 ~-~~li~~l~~~~~~------------~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
+ +++.+.++..... +...+.+..+.+.+..++.+....++..++++.+.+.|++.+ + ..|..+
T Consensus 200 ~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---~~~~~~ 275 (373)
T 3frk_A 200 NDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-V---IIPVEA 275 (373)
T ss_dssp SCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-E---ECCCCC
T ss_pred CCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-e---EeccCC
Confidence 6 4577776654331 112346666666666677777777777788888888887665 3 233221
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCcccccc----CCCHHHHHhcCCCC
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW----DLSQSERLKYGIMD 505 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~----~~~~~~~~~~gi~~ 505 (531)
.... ....++.+..+ +...+.+.|+..++.++.+....+.++|...... .++..+. +..
T Consensus 276 ~~~~---------~~~~~~~~~~~----~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 338 (373)
T 3frk_A 276 DYAK---------HVWYTFVIRSE----KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEK----IAN 338 (373)
T ss_dssp TTEE---------CCCSSEEEEES----SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHH----HHH
T ss_pred CCCc---------eeeEEEEEEeC----CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHH----HHh
Confidence 1100 01122334432 2445666666557777766433333333221100 1111111 124
Q ss_pred CeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 506 NLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 506 ~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
+.|||+++...+++.++.+.++|+++
T Consensus 339 ~~lrl~~~~~~t~~di~~~~~~l~~~ 364 (373)
T 3frk_A 339 EILSIPIWYGMKNEEIEYVIDKINAW 364 (373)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHHTC
T ss_pred CEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999753
No 50
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.92 E-value=1.9e-23 Score=215.38 Aligned_cols=262 Identities=13% Similarity=0.137 Sum_probs=185.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 294 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~les 294 (531)
.++++++++|++|+.+++.+++++||+|+++.++|.+....+ +..|+++..++.++...+++.++..++++|++++
T Consensus 82 ~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~~~~~~~l~~~~~~~~v~i~~ 157 (360)
T 3hdo_A 82 PSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLA----EVQGARVRTFGLTGDFRIAGFPERYEGKVFFLTT 157 (360)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHH----HHHTCEEEEECBCTTSSBTTCCSSBCSSEEEEES
T ss_pred cceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHH----HHCCCEEEEeeCCCCCCHHHHHhhcCCCEEEEeC
Confidence 678999999999999999999999999999999999866443 4458888888754321222222222367999999
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccc----cccCCcEEEECCccccccCCCceEEEEEeChHHHHHH
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI 370 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~----l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l 370 (531)
|+||+|.+.|+++|.++|+++|++||+|++|+....... ...+.++++.|+||.++..|. ..|++++++++++.+
T Consensus 158 p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~ 236 (360)
T 3hdo_A 158 PNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGM-RIGLAIARPEVIAAL 236 (360)
T ss_dssp SCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTS-CCEEEECCHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCcc-ceeeEeeCHHHHHHH
Confidence 999999999999999999999999999999875321111 123566999999999986653 368888899999888
Q ss_pred HHHhhhcCCCchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccE
Q 009604 371 RNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGV 447 (531)
Q Consensus 371 ~~~~~~~G~~~s~~~a~l~l~~L~---tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~i 447 (531)
+.....+ ..++...+.+...++ .+..+.++..++++.+.+.|+++ ++. + ++. .|++
T Consensus 237 ~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~-~~~----------------~~~~ 295 (360)
T 3hdo_A 237 DKIRDHY--NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYD-V-IPS----------------QGNY 295 (360)
T ss_dssp HHHSCSC--CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-CCC----------------SSSE
T ss_pred HHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-E-cCC----------------CccE
Confidence 7765443 345554444444443 35566677778888899999877 442 2 221 3567
Q ss_pred EEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHH
Q 009604 448 VSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQA 527 (531)
Q Consensus 448 vsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~A 527 (531)
+++.+++. +...+.+.|...++.++.|+. + -.++.||||++ +++.++.|.++
T Consensus 296 ~~~~~~~~--~~~~l~~~l~~~gi~v~~~~~------~-----------------~~~~~iRis~~---~~~e~~~l~~a 347 (360)
T 3hdo_A 296 LFATPPDR--DGKRVYDGLYARKVLVRHFSD------P-----------------LLAHGMRISIG---TREEMEQTLAA 347 (360)
T ss_dssp EEEECTTC--CHHHHHHHHHHTTEECBCCCS------T-----------------TTTTSEEEECC---CHHHHHHHHHH
T ss_pred EEEECCCC--CHHHHHHHHHHCCEEEEECCC------C-----------------CCCCEEEEEcC---CHHHHHHHHHH
Confidence 88888642 345566666655666665432 0 02478999999 45566677776
Q ss_pred HHh
Q 009604 528 LHA 530 (531)
Q Consensus 528 L~~ 530 (531)
|++
T Consensus 348 l~~ 350 (360)
T 3hdo_A 348 LKE 350 (360)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 51
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.92 E-value=9.9e-24 Score=220.73 Aligned_cols=288 Identities=15% Similarity=0.156 Sum_probs=209.0
Q ss_pred CCcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHHhc-cCCC
Q 009604 215 AESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEAAL-NNNN 286 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~al-~~~~ 286 (531)
.+++++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|+++.+++.+ |+++|++++ ++ +
T Consensus 53 ~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~----~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~-~ 127 (377)
T 3ju7_A 53 RGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAA----IWCGLEPYFIDISIDDWYMDKTVLWDKIEEL-K 127 (377)
T ss_dssp CSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTTCSBCHHHHHHHHHHH-G
T ss_pred CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCCccCCcCHHHHHHHHhcC-C
Confidence 578999999999999999998 899999999999999876443 4568998888743 899999988 44 4
Q ss_pred --cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcccccccc---CCcEEEECC--ccccccCCCceEEE
Q 009604 287 --VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSL---GADLVLHSA--TKFIGGHNDVLAGS 359 (531)
Q Consensus 287 --tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~---gaDivv~S~--sK~lgg~g~v~gG~ 359 (531)
||+|+ |+||+|.+.|+++|.++|+ +|++||+|++++.+........ ..|+.++|+ ||++++ ++ ||+
T Consensus 128 ~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~-g~--gG~ 200 (377)
T 3ju7_A 128 EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGI-GE--GGL 200 (377)
T ss_dssp GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCC-BS--CEE
T ss_pred CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCC-CC--cEE
Confidence 89887 7889999999999999999 9999999999876543332233 368888875 699997 42 777
Q ss_pred EEe-ChHHHHHHHHHhhh------------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCC
Q 009604 360 ISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP 426 (531)
Q Consensus 360 iv~-~~~li~~l~~~~~~------------~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~p 426 (531)
++. ++++.++++.++.. ++..++++.+++++.+++++..+++++.++++.+.+.|++++.+.....|
T Consensus 201 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 280 (377)
T 3ju7_A 201 IYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQL 280 (377)
T ss_dssp EEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBC
T ss_pred EEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccC
Confidence 776 46777777765431 23567888899888999999999999999999999999988754211112
Q ss_pred CCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCcccccc--CCCHHHHHhcCCC
Q 009604 427 GLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW--DLSQSERLKYGIM 504 (531)
Q Consensus 427 gl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~--~~~~~~~~~~gi~ 504 (531)
.-..+. ...++.+.+++. ...+.+++.|+..++.++.+....+..+|...+|. .++..+. +.
T Consensus 281 ~~~~~~-----------~~~~~~~~~~~~-~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~ 344 (377)
T 3ju7_A 281 QKTEAV-----------IQQFMPILCPEE-VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNK----IA 344 (377)
T ss_dssp CCCSCB-----------CCSSEEEECCTT-SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHH----HH
T ss_pred CCCCcc-----------eEEEEEEEeCCh-hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHH----HH
Confidence 111111 112345555432 23567888888888888877532232333322221 1222222 23
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 505 DNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 505 ~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
++.|||+++...+++.++.+.++|.+
T Consensus 345 ~~~l~lp~~~~~t~~di~~v~~~l~~ 370 (377)
T 3ju7_A 345 KRIVSLPLWEGMTKEIVEQIVICLGQ 370 (377)
T ss_dssp HHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred hCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 56899999999899999998888864
No 52
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.92 E-value=2.8e-24 Score=224.36 Aligned_cols=269 Identities=16% Similarity=0.180 Sum_probs=190.9
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----------CCHHHHHHhccC
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----------ADMEGLEAALNN 284 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----------~d~e~Le~al~~ 284 (531)
++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|.++..++. .|+++|++++++
T Consensus 103 ~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 178 (407)
T 3nra_A 103 DGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL----VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA 178 (407)
T ss_dssp TSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT
T ss_pred CcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHH----HHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh
Confidence 6788888888999999999999999999999999986543 3445777777654 289999999987
Q ss_pred CCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-------cccc---ccCCcEEEECCcccccc
Q 009604 285 NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL---SLGADLVLHSATKFIGG 351 (531)
Q Consensus 285 ~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-------~~~l---~~gaDivv~S~sK~lgg 351 (531)
++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+.... ...+ ..+.++++.|+||.++.
T Consensus 179 -~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 257 (407)
T 3nra_A 179 -GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESL 257 (407)
T ss_dssp -TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCC
T ss_pred -CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCC
Confidence 4999999999999999998 88999999999999999999875321 1111 13466999999999985
Q ss_pred CCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCC
Q 009604 352 HNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPG 427 (531)
Q Consensus 352 ~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L----~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pg 427 (531)
.|. ..|++++++++++.++.....+....++...+.+...+ +.+..+.++..++++.+.+.|++++++.. ..|.
T Consensus 258 ~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~ 335 (407)
T 3nra_A 258 SGY-RLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFA-RTPQ 335 (407)
T ss_dssp GGG-CCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBC-CCCS
T ss_pred Cee-eEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCcee-ccCC
Confidence 553 36888899999998887766665555555544443333 23556667777888899999988765532 1111
Q ss_pred CCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCCC
Q 009604 428 LKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 506 (531)
Q Consensus 428 l~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~ 506 (531)
.|.++++.++........+.+.|. ..++.+..|..+. + ..++
T Consensus 336 ----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----~-----------------~~~~ 378 (407)
T 3nra_A 336 ----------------AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS----P-----------------HTAD 378 (407)
T ss_dssp ----------------BSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC----T-----------------TCTT
T ss_pred ----------------eeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC----C-----------------CCCC
Confidence 245677777541123455666663 3466776664432 1 1257
Q ss_pred eEEEEecCCCH---HHHHHHHHHHHH
Q 009604 507 LVRFSFGVEDF---EDLKADVLQALH 529 (531)
Q Consensus 507 lIRlSvGlE~~---edli~dL~~AL~ 529 (531)
.||||++. +. +..++.|.++++
T Consensus 379 ~iRis~~~-~~~~i~~~~~~l~~~~~ 403 (407)
T 3nra_A 379 SVRLNFSQ-DHEAAVAAARRIVTLVE 403 (407)
T ss_dssp BEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-CHHHHHHHHHHHHHHHH
Confidence 89999996 32 333444444443
No 53
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.92 E-value=3.3e-23 Score=214.91 Aligned_cols=267 Identities=15% Similarity=0.109 Sum_probs=185.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---------CHHHHHHhccCC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---------DMEGLEAALNNN 285 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---------d~e~Le~al~~~ 285 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+....+ +..|.++..++.+ |+++|++++++
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~- 164 (391)
T 4dq6_A 90 SEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVV----KNNNRELIISPLQKLENGNYIMDYEDIENKIKD- 164 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHH----HHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-
T ss_pred HHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHH----HHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-
Confidence 567889999999999999999999999999999999866443 4468888777644 89999999976
Q ss_pred CcEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCEEEEeCCCCCCcc-----cccccc-----CCcEEEECCccccccC
Q 009604 286 NVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL-----GADLVLHSATKFIGGH 352 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~---dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~-----gaDivv~S~sK~lgg~ 352 (531)
+++|++++|+||||.+. ++++|.++|+++|+++|+|++|..... .....+ +..+++.|+||.++.+
T Consensus 165 -~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 243 (391)
T 4dq6_A 165 -VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIA 243 (391)
T ss_dssp -EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCG
T ss_pred -CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCc
Confidence 89999999999999995 578899999999999999999875321 111222 2338999999999755
Q ss_pred CCceEEEEEeCh-HHHHHHHHHhhhcCC-CchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHc-CCCceEEeC
Q 009604 353 NDVLAGSISGSG-KLVTQIRNLHHVLGG-ALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEA-HPKVKRVHY 425 (531)
Q Consensus 353 g~v~gG~iv~~~-~li~~l~~~~~~~G~-~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~-~p~v~~V~~ 425 (531)
|. ..|++++++ ++.+.++......+. +.++.....+...++. +..+.++..++++.+.+.|++ .|++.. ..
T Consensus 244 G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~ 321 (391)
T 4dq6_A 244 GL-QSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKV-RK 321 (391)
T ss_dssp GG-CCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE-CC
T ss_pred cc-ceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEe-cC
Confidence 53 367777765 888888776544332 4455544444444433 455566677888888889987 566532 21
Q ss_pred CCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-CcccccCCcccccccCccccccCCCHHHHHhcCCC
Q 009604 426 PGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 504 (531)
Q Consensus 426 pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~-~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~ 504 (531)
|. .+.++++.++........+.+.|... ++.+..|..+.. ..
T Consensus 322 ~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~ 364 (391)
T 4dq6_A 322 PE----------------GTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGI---------------------GG 364 (391)
T ss_dssp CS----------------BSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCT---------------------TC
T ss_pred CC----------------ccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCC---------------------CC
Confidence 11 23355677763112345666766544 777766644321 12
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHH
Q 009604 505 DNLVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 505 ~~lIRlSvGlE~~edli~dL~~AL 528 (531)
++.+|||++. +++.++.+.++|
T Consensus 365 ~~~iRis~~~--~~~~i~~~l~~l 386 (391)
T 4dq6_A 365 SGYQRINLAC--PRSMLEEALIRI 386 (391)
T ss_dssp TTEEEEECCS--CHHHHHHHHHHH
T ss_pred CCeEEEEEcC--CHHHHHHHHHHH
Confidence 5799999994 333444444443
No 54
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.92 E-value=2e-23 Score=217.10 Aligned_cols=200 Identities=15% Similarity=0.183 Sum_probs=153.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccCCCc
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNNNV 287 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~~~~t 287 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|+++..++. .|+++|++++++ ++
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~ 164 (388)
T 1j32_A 90 ADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEM----VKLAEGTPVILPTTVETQFKVSPEQIRQAITP-KT 164 (388)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT-TE
T ss_pred hhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCEEEEecCCcccCCCCCHHHHHHhcCc-Cc
Confidence 45677777788999999999999999999999999886543 3456888887764 278999999987 49
Q ss_pred EEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc-----cccc-----cCCcEEEECCccccccCCC
Q 009604 288 SLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS-----LGADLVLHSATKFIGGHND 354 (531)
Q Consensus 288 klV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~-----~~l~-----~gaDivv~S~sK~lgg~g~ 354 (531)
++|++++|+||||.+++ +++|.++|+++|+++|+|++|+..... .... .+.|+++.|+||+++.+|.
T Consensus 165 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 165 KLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCccc
Confidence 99999999999999975 889999999999999999998753211 1111 4578999999999976664
Q ss_pred ceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCc
Q 009604 355 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILEAHPKV 420 (531)
Q Consensus 355 v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~----tl~~r~~~~~~na~~La~~L~~~p~v 420 (531)
..|++++++++++.++..........++...+.+...++ .+....++..++++.+.+.|++.|++
T Consensus 245 -r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 313 (388)
T 1j32_A 245 -RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGL 313 (388)
T ss_dssp -CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred -ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 368889999998888776554444445555444444443 24455566677888888999887655
No 55
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.92 E-value=1.3e-23 Score=216.82 Aligned_cols=283 Identities=15% Similarity=0.084 Sum_probs=187.2
Q ss_pred CcEEEeCChHHHHHHHHHHhc----cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCC
Q 009604 216 ESTVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNN 286 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all----~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~ 286 (531)
++++++++|++|+.+++.++. ++||+|+++.+.|.+....+. .+...|+++..++. .|+++|++++++ +
T Consensus 62 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~ 139 (384)
T 1eg5_A 62 SEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-D 139 (384)
T ss_dssp GGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-T
T ss_pred CeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHH-HHHhcCCEEEEEccCCCCccCHHHHHHHhCC-C
Confidence 578888999999999999987 799999999999988765553 34556888888875 479999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CEEEEeCCCCCCc-cccccccCCcEEEECCccccccCCCceEEEEEeC
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGS 363 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~g--i~lIvD~a~a~~~-~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~ 363 (531)
+++|++++|+||||.+.|+++|.++|+++| ++||+|++|+.+. ......+++|+++.|+||++++.| .|+++++
T Consensus 140 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G---~G~~~~~ 216 (384)
T 1eg5_A 140 TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKG---VGITYIR 216 (384)
T ss_dssp EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTT---CEEEEEC
T ss_pred CeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCc---eEEEEEc
Confidence 999999999999999999999999999999 9999999976332 112223478999999999988766 4888888
Q ss_pred hHH--HHHHHHH---hhhcCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchh
Q 009604 364 GKL--VTQIRNL---HHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 434 (531)
Q Consensus 364 ~~l--i~~l~~~---~~~~G~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~ 434 (531)
+++ .+.+... ......+.+....+.+...++. +....++..++++.+.+.|++ +++. +..|. .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~-~~~~~--~---- 288 (384)
T 1eg5_A 217 KGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGAH-IITPL--E---- 288 (384)
T ss_dssp TTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTCE-ECSCT--T----
T ss_pred CCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCeE-EeCCc--c----
Confidence 765 2111110 0111223444444333334433 344556667788888888887 5553 22221 0
Q ss_pred hhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCC----CCeEEE
Q 009604 435 HIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM----DNLVRF 510 (531)
Q Consensus 435 ~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~----~~lIRl 510 (531)
.+.+.++.|.+++. ....+.+.|...++.+..|..+.... .. +......+|++ ++.|||
T Consensus 289 -------~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~--~~------~~~~~~~~g~~~~~~~~~iRi 351 (384)
T 1eg5_A 289 -------ISLPNTLSVSFPNI--RGSTLQNLLSGYGIYVSTSSACTSKD--ER------LRHVLDAMGVDRRIAQGAIRI 351 (384)
T ss_dssp -------SBCTTEEEEECTTC--CHHHHHHHHHHTTEECBC--------------------CHHHHTTCCHHHHHHEEEE
T ss_pred -------cCCCCEEEEEeCCC--CHHHHHHHHhhCCeEEeccccccCCC--Cc------chHHHHHcCCChhhcCCeEEE
Confidence 11456888888642 34566677766678887775432110 00 01122334443 478999
Q ss_pred EecCCCHHHHHHHHHHHH
Q 009604 511 SFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 511 SvGlE~~edli~dL~~AL 528 (531)
+++...+++.++.+.++|
T Consensus 352 ~~~~~~~~~~i~~~~~~l 369 (384)
T 1eg5_A 352 SLCKYNTEEEVDYFLKKI 369 (384)
T ss_dssp ECCTTCCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999655444444444444
No 56
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.92 E-value=2e-23 Score=216.29 Aligned_cols=286 Identities=17% Similarity=0.194 Sum_probs=205.6
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHHhccCCC
Q 009604 214 GAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEAALNNNN 286 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~al~~~~ 286 (531)
|.+++++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|+++.+++.+ |+++|++++++ +
T Consensus 49 ~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~----~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~-~ 123 (367)
T 3nyt_A 49 GAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETV----ALLGAKPVYVDIDPRTYNLDPQLLEAAITP-R 123 (367)
T ss_dssp TCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTTCSBCGGGTGGGCCT-T
T ss_pred CCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHH----HHcCCEEEEEecCCccCCcCHHHHHHhcCc-C
Confidence 4567999999999999999999 899999999999999876543 4458888888743 78999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCC--cEEEECC--ccccccCCCceEEEEEe
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVLHSA--TKFIGGHNDVLAGSISG 362 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~ga--Divv~S~--sK~lgg~g~v~gG~iv~ 362 (531)
+++|+ |+||+|...|+++|.++|+++|++||+|++++.+........+. |+++.|+ +|++++.|. +|+++.
T Consensus 124 ~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~ 198 (367)
T 3nyt_A 124 TKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAPLGCYGD--GGAIFT 198 (367)
T ss_dssp EEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSSSCCSSC--CEEEEE
T ss_pred CcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCCCcCCCcCc--eeEEEe
Confidence 99988 78999999999999999999999999999988654433333344 9999996 899998664 788887
Q ss_pred -ChHHHHHHHHHhhh------------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 363 -SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 363 -~~~li~~l~~~~~~------------~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
++++.+.++..... ++..+++..+++++..++.+....++..++++.+.+.|++.+ + ..|..+
T Consensus 199 ~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~-~---~~~~~~ 274 (367)
T 3nyt_A 199 NDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVG-I---GTPFIE 274 (367)
T ss_dssp SCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT-C---CCCCCC
T ss_pred CCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-e---eccCCC
Confidence 46777777664431 234567888888888888888888888899999999998863 2 122211
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccc-cccCCCHHHHHhcCCCCCeE
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM-SYWDLSQSERLKYGIMDNLV 508 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~-s~~~~~~~~~~~~gi~~~lI 508 (531)
.... ....++.+.++ +.+.+.+.|+..++.++.+....+..+|... ....++..+. +.+..|
T Consensus 275 ~~~~---------~~~~~~~~~~~----~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l 337 (367)
T 3nyt_A 275 VNNI---------SVYAQYTVRMD----NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDK----AATQVM 337 (367)
T ss_dssp TTEE---------CCCSSEEEECS----SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHH----HHHHEE
T ss_pred CCCc---------eeeEEEEEEeC----CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHH----HHhCeE
Confidence 1000 01223455554 2345666666556777766433333333321 1111222111 235689
Q ss_pred EEEecCCCHHHHHHHHHHHHHh
Q 009604 509 RFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 509 RlSvGlE~~edli~dL~~AL~~ 530 (531)
||+++...+++.++.+.+++.+
T Consensus 338 ~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 338 SLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp EECCCTTCCHHHHHHHHHHHHC
T ss_pred EccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 57
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.92 E-value=1.3e-23 Score=215.10 Aligned_cols=267 Identities=11% Similarity=0.040 Sum_probs=189.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCcEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSL 289 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~~tkl 289 (531)
.++++++++|++|+.+++.+++++ +.|++..+.|. . . +...++..|+++..++.+ |+++|+ +++ +|++
T Consensus 61 ~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~-~-~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~-~~~~ 133 (362)
T 3ffr_A 61 NYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFS-K-R-FYEFAGELGREAYKEEAAFGKGFYPADIT--VPA-DAEI 133 (362)
T ss_dssp TEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHH-H-H-HHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCT-TCCE
T ss_pred CcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHH-H-H-HHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccC-CccE
Confidence 356888889999999999999988 55555555554 1 1 223456678888887643 778887 666 5999
Q ss_pred EEEeCCCCCCCcccCHHHHHHHHHhc-CCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeChHHHH
Q 009604 290 FFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT 368 (531)
Q Consensus 290 V~lesP~NPtG~v~dl~~I~~la~~~-gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~ 368 (531)
|++++|+||||.+.|+++|.++|+++ |++||+|++++.+........ +|+++.|+||+++++.+ +|+++.++++++
T Consensus 134 v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~-~d~~~~s~~K~~~~~~G--~g~~~~~~~~~~ 210 (362)
T 3ffr_A 134 ICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK-IDSVFFSVQKCFGLPAG--LGVWILNDRVIE 210 (362)
T ss_dssp EEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS-CSEEEEETTSTTCCCSC--CEEEEEEHHHHH
T ss_pred EEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChhH-CcEEEEecccccCCCCc--eEEEEECHHHHH
Confidence 99999999999999999999999999 999999999876542212222 89999999999994433 478888888888
Q ss_pred HHHHHhh---------------------hcCCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCceE
Q 009604 369 QIRNLHH---------------------VLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPKVKR 422 (531)
Q Consensus 369 ~l~~~~~---------------------~~G~~~s~~~a~l~l~~L~t-----l~~r~~~~~~na~~La~~L~~~p~v~~ 422 (531)
+++.... ....+.+....+.+...++. +..+.++..++++.+.+.|+++|++..
T Consensus 211 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 290 (362)
T 3ffr_A 211 KSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSF 290 (362)
T ss_dssp HHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEE
T ss_pred HhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCcee
Confidence 7765442 00223333333333233332 456677778899999999998877642
Q ss_pred EeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcC
Q 009604 423 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 502 (531)
Q Consensus 423 V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~g 502 (531)
..|. +. ...+.+++|.+++ ...+|.+.|...++.++.|..+
T Consensus 291 -~~~~----~~--------~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g~~~----------------------- 331 (362)
T 3ffr_A 291 -GVED----AK--------LRSMTTIVANTTM---LPGEINKILEPFDMAVGAGYGS----------------------- 331 (362)
T ss_dssp -SSSC----GG--------GBCSSEEEEEESS---CHHHHHHHHGGGTEEEEECSGG-----------------------
T ss_pred -ccCC----hh--------hcCCceEEEecCC---CHHHHHHHHHHCCeEEecCccc-----------------------
Confidence 2211 11 0135688999975 4567888887667777655211
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 503 IMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 503 i~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
..++.||||++..++++.++++.++|++
T Consensus 332 ~~~~~iRis~~~~~~~e~i~~l~~~l~~ 359 (362)
T 3ffr_A 332 KKETQIRIANFPAHSLEQVHKLVQTLKE 359 (362)
T ss_dssp GTTTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1257899999999899999999998875
No 58
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.91 E-value=1.1e-22 Score=212.21 Aligned_cols=272 Identities=12% Similarity=0.027 Sum_probs=187.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhccCCC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al~~~~ 286 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|.++..++. .|+++|++++++.+
T Consensus 89 ~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~ 164 (399)
T 1c7n_A 89 TDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAI----KNQERKIIECELLEKDGYYTIDFQKLEKLSKDKN 164 (399)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHH----HTTTCEEEECCCEEETTEEECCHHHHHHHHTCTT
T ss_pred hhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHH----HHcCCEEEecccccCCCCEEEcHHHHHHHhccCC
Confidence 467888888899999999999999999999999999866433 445777776653 47999999998335
Q ss_pred cEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccc-----cCCcEEEECCccccccCC
Q 009604 287 VSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS-----LGADLVLHSATKFIGGHN 353 (531)
Q Consensus 287 tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~-----~gaDivv~S~sK~lgg~g 353 (531)
+++|++++|+||||.+.+ +++|+++|+++|++||+|++|..... ..... .+.++++.|+||.++.+|
T Consensus 165 ~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 244 (399)
T 1c7n_A 165 NKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAG 244 (399)
T ss_dssp EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG
T ss_pred CcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccc
Confidence 999999999999999998 89999999999999999999875321 11111 246799999999998655
Q ss_pred CceEEEEEeC-hHHHHHHHHHhhhcCC-CchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CCCceEEeCC
Q 009604 354 DVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILEA-HPKVKRVHYP 426 (531)
Q Consensus 354 ~v~gG~iv~~-~~li~~l~~~~~~~G~-~~s~~~a~l~l~~L~----tl~~r~~~~~~na~~La~~L~~-~p~v~~V~~p 426 (531)
. ..|+++++ +++++.++.....++. +.++...+.+...++ .+....++..++++.+.+.|++ +|++.. ++
T Consensus 245 ~-r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~ 321 (399)
T 1c7n_A 245 M-GMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKA--PL 321 (399)
T ss_dssp G-CCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBC--CC
T ss_pred h-heEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeE--ec
Confidence 3 36888876 5788888776655432 345554444444443 3444455666788888888987 666531 11
Q ss_pred CCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCC
Q 009604 427 GLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505 (531)
Q Consensus 427 gl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~ 505 (531)
. ..+.+++++++........+.+.|. ..++.+..|..+.. ..+
T Consensus 322 ~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~ 365 (399)
T 1c7n_A 322 I---------------EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD---------------------GGI 365 (399)
T ss_dssp C---------------SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCG---------------------GGT
T ss_pred C---------------CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCC---------------------CCC
Confidence 1 0233556888631013456777774 56777766644320 025
Q ss_pred CeEEEEecCC--CHHHHHHHHHHHHH
Q 009604 506 NLVRFSFGVE--DFEDLKADVLQALH 529 (531)
Q Consensus 506 ~lIRlSvGlE--~~edli~dL~~AL~ 529 (531)
+.||||++.. +.++.++.|.++++
T Consensus 366 ~~iRis~~~~~~~l~~~l~~l~~~l~ 391 (399)
T 1c7n_A 366 GFERINLAAPSSVIQESLERLNKALK 391 (399)
T ss_dssp TEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccCHHHHHHHHHHHHHHHH
Confidence 7899999975 22333444444443
No 59
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.91 E-value=2.2e-23 Score=217.57 Aligned_cols=250 Identities=18% Similarity=0.195 Sum_probs=178.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-------CHHHHHHhccCCCc
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-------DMEGLEAALNNNNV 287 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-------d~e~Le~al~~~~t 287 (531)
.++++++++|++|+.+++.+++++||+|+++.++|.+....+ +..|+++..++.+ |+++|++++++ ++
T Consensus 101 ~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~ 175 (389)
T 1o4s_A 101 PDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQI----ILAGGTVNVVETFMSKNFQPSLEEVEGLLVG-KT 175 (389)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECCGGGTTCCCHHHHHHTCCT-TE
T ss_pred HHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEecCCccCCCCCHHHHHHhccc-Cc
Confidence 457888888889999999999999999999999999866443 4457777777532 78999999987 49
Q ss_pred EEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc----cccc----cCCcEEEECCccccccCCCce
Q 009604 288 SLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS----LGADLVLHSATKFIGGHNDVL 356 (531)
Q Consensus 288 klV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~----~~l~----~gaDivv~S~sK~lgg~g~v~ 356 (531)
++|++++|+||||.+++ +++|.++|+++|++||+|++|+.+... .... .+.|+++.|+||+++.+| ..
T Consensus 176 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r 254 (389)
T 1o4s_A 176 KAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WR 254 (389)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GC
T ss_pred eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcc-cc
Confidence 99999999999999987 889999999999999999998754321 1111 368999999999997555 34
Q ss_pred EEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhh
Q 009604 357 AGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHH 435 (531)
Q Consensus 357 gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t-l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~ 435 (531)
+|++++++++++.+...........++...+.+...++. +....++..++++.+.+.|++. ++. +..|.
T Consensus 255 ~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-------- 324 (389)
T 1o4s_A 255 VGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM-GVK-FVEPE-------- 324 (389)
T ss_dssp CEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCS--------
T ss_pred eEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-CCe-eecCC--------
Confidence 689999999988887765544444455554444444432 3344556667788888888875 332 11110
Q ss_pred hhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009604 436 IATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV 514 (531)
Q Consensus 436 l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGl 514 (531)
.|.++++.++ ....++.+.|. ..++.+..|..+. . ++.+|||++.
T Consensus 325 --------~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~----------------------~-~~~~Ris~~~ 370 (389)
T 1o4s_A 325 --------GAFYLFFKVR---GDDVKFCERLLEEKKVALVPGSAFL----------------------K-PGFVRLSFAT 370 (389)
T ss_dssp --------BSSEEEEECS---SCHHHHHHHHHHHHCEECEEGGGGT----------------------C-TTEEEEECCS
T ss_pred --------cceEEEEeCC---CCHHHHHHHHHHHCCEEEeCchhcC----------------------C-CCeEEEEEeC
Confidence 2456777775 12345666553 4466665553321 1 3589999995
No 60
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.91 E-value=5.7e-23 Score=212.46 Aligned_cols=269 Identities=16% Similarity=0.099 Sum_probs=187.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhccCCC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al~~~~ 286 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|.++..++. .|+++|++++++ +
T Consensus 82 ~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~ 156 (383)
T 3kax_A 82 KEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEM----VTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQ-G 156 (383)
T ss_dssp GGGEEEESCHHHHHHHHHHHHCCTTCEEEECSSCCHHHHHH----HHHTTCEEEECCCEEETTEEECCHHHHHHHHTT-T
T ss_pred hhhEEEcCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHH----HHHcCCEEEeccceecCCcEEEcHHHHHHHhCc-C
Confidence 46788888889999999999999999999999999986643 3455788777764 489999999966 5
Q ss_pred cEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccc-----cCCcEEEECCccccccCC
Q 009604 287 VSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS-----LGADLVLHSATKFIGGHN 353 (531)
Q Consensus 287 tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~-----~gaDivv~S~sK~lgg~g 353 (531)
+++|++++|+||||.+.+ +++|.++|+++|++||+|++|..... ..... .+.++++.|+||.++..|
T Consensus 157 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 236 (383)
T 3kax_A 157 VKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAG 236 (383)
T ss_dssp CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG
T ss_pred CeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcc
Confidence 999999999999999987 55666669999999999999875321 11112 245599999999998555
Q ss_pred CceEEEEEe-ChHHHHHHHHHhhhcCC-CchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHc-CCCceEEeCC
Q 009604 354 DVLAGSISG-SGKLVTQIRNLHHVLGG-ALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEA-HPKVKRVHYP 426 (531)
Q Consensus 354 ~v~gG~iv~-~~~li~~l~~~~~~~G~-~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~-~p~v~~V~~p 426 (531)
. ..|++++ ++++++.++......+. +.++...+.+...++. +..+.++..++++.+.+.|++ .|++.. ..|
T Consensus 237 ~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~ 314 (383)
T 3kax_A 237 L-QASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSV-MKP 314 (383)
T ss_dssp G-CCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEE-CCC
T ss_pred h-hheEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceE-ecC
Confidence 3 3677777 67888888776654433 4555554444444432 555566677888889999987 566532 222
Q ss_pred CCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCC
Q 009604 427 GLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505 (531)
Q Consensus 427 gl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~ 505 (531)
. .+.++++.++.......++.+.|. ..++.++.|..+.. ..+
T Consensus 315 ~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~ 357 (383)
T 3kax_A 315 E----------------GSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGL---------------------GGE 357 (383)
T ss_dssp S----------------BSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCT---------------------TCT
T ss_pred C----------------ceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcC---------------------CCC
Confidence 1 233556777631124566777774 66777777754321 125
Q ss_pred CeEEEEecCCCHHHHHHHHHHHHH
Q 009604 506 NLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 506 ~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
+.+|||++. +++.++.+.++|+
T Consensus 358 ~~iRi~~~~--~~~~i~~~l~~l~ 379 (383)
T 3kax_A 358 EHIGINIGC--PRSVLEEILNRLR 379 (383)
T ss_dssp TEEEEECSS--CHHHHHHHHHHHH
T ss_pred CeEEEEEcC--CHHHHHHHHHHHH
Confidence 799999995 3334444444443
No 61
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.91 E-value=2.7e-23 Score=216.21 Aligned_cols=289 Identities=14% Similarity=0.127 Sum_probs=200.2
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------CCHHHHHHhccCCC
Q 009604 214 GAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ADMEGLEAALNNNN 286 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------~d~e~Le~al~~~~ 286 (531)
|.++.++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|+++.+++. .|+++|++++++ +
T Consensus 52 ~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-~ 126 (388)
T 1b9h_A 52 GAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAA----QRLGAVTVPVDVDAATYNLDPEAVAAAVTP-R 126 (388)
T ss_dssp TCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTTCCBCHHHHHHHCCT-T
T ss_pred CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHHH----HHcCCEEEEEecCCCcCCCCHHHHHHhcCc-C
Confidence 6778999999999999999999 899999999999999876443 456888888764 279999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc---cccccCCcEEEECCc--cccccCCCceEEEEE
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KALSLGADLVLHSAT--KFIGGHNDVLAGSIS 361 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~---~~l~~gaDivv~S~s--K~lgg~g~v~gG~iv 361 (531)
+++|+ |+||+|.+.|+++|.++|+++|++||+|++|+.+... ....++ |+++.|++ |.++|. .+|+++
T Consensus 127 ~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~---~~G~~~ 199 (388)
T 1b9h_A 127 TKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAG---EGGAVV 199 (388)
T ss_dssp EEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSS---SCEEEE
T ss_pred ceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCC---CeEEEE
Confidence 89888 9999999999999999999999999999999865432 222333 67777765 777663 278888
Q ss_pred eChH-H--HHHHHHHhhh-------------cCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEE
Q 009604 362 GSGK-L--VTQIRNLHHV-------------LGG--ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRV 423 (531)
Q Consensus 362 ~~~~-l--i~~l~~~~~~-------------~G~--~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V 423 (531)
++++ + ++.++..... .|. .+++..++++...++.+..++++..++++.+.+.|+++|++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~- 278 (388)
T 1b9h_A 200 FPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVP- 278 (388)
T ss_dssp ECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEE-
T ss_pred ECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc-
Confidence 8775 5 5555433210 022 2566666666677888888888888899999999998877642
Q ss_pred eCCCCCCCchhhhhhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCCcccccCCcccccccCcccc--cc---------
Q 009604 424 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS--YW--------- 491 (531)
Q Consensus 424 ~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~-~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s--~~--------- 491 (531)
..+.-... ...+++++|.+++. .....++.+.|...++.++.|.. .+...|.... ..
T Consensus 279 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 347 (388)
T 1b9h_A 279 QGGDVRAD----------RNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFR-AIYRTDAFWELGAPDESVDAIAR 347 (388)
T ss_dssp CCCCTTCC----------BCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCC-CGGGSHHHHHSSCCSSCHHHHHH
T ss_pred cCCCcCCC----------ccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccC-ccccChHhHhcCCCccccccccc
Confidence 21110000 11357899999752 23566778887666777765532 1111111000 00
Q ss_pred CCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHHHh
Q 009604 492 DLSQSERLKYGIMDNLVRFSFGVED-FEDLKADVLQALHA 530 (531)
Q Consensus 492 ~~~~~~~~~~gi~~~lIRlSvGlE~-~edli~dL~~AL~~ 530 (531)
.++..++ +..+.|||+++... +++.++.+.++|++
T Consensus 348 ~~~~~~~----~~~~~l~l~~~~~~~t~edi~~~~~~l~~ 383 (388)
T 1b9h_A 348 RCPNTDA----ISSDCVWLHHRVLLAGEPELHATAEIIAD 383 (388)
T ss_dssp TCHHHHH----HHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred CCHHHHH----HHhCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 0111111 12357999999888 78778887777754
No 62
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.91 E-value=1.4e-23 Score=219.03 Aligned_cols=191 Identities=21% Similarity=0.224 Sum_probs=157.2
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEE-EEEeC
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSL-FFTES 294 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tkl-V~les 294 (531)
++++++++|++|+.+++.++ +||+|+++.+.|++++..+. .++..|+++.++ .|+++|+++ ++ ++++ |++++
T Consensus 77 ~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~l~~~-~~-~~~~~v~~~~ 149 (374)
T 2aeu_A 77 DKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGEILNK-ID-KDTLVIITGS 149 (374)
T ss_dssp EEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHHHHTT-CC-TTEEEEEECB
T ss_pred ceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHHHHhc-CC-CccEEEEEcc
Confidence 67899999999999999987 99999999999988776554 556678988888 689999988 65 5999 99999
Q ss_pred CCCCCC-cccCHHHHHHHHHhcCCEEEEeCCCCCCcc---cc--ccccCCcEEEECCccccccCCCceEEEEEeChHHHH
Q 009604 295 PTNPFL-RCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QK--ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT 368 (531)
Q Consensus 295 P~NPtG-~v~dl~~I~~la~~~gi~lIvD~a~a~~~~---~~--~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~ 368 (531)
|+||+| ...|+++|.++|+++|++||+|++|+.... .. +...+.|+++.|+||+++|.. +|++++++++++
T Consensus 150 p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~---~G~~~~~~~~~~ 226 (374)
T 2aeu_A 150 TMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR---GGLLAGKKELVD 226 (374)
T ss_dssp CTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCS---CEEEEEEHHHHH
T ss_pred CCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcc---eEEEEECHHHHH
Confidence 999999 888999999999999999999999876431 11 455688999999999988753 799999999999
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHc
Q 009604 369 QIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALRM----AKILEA 416 (531)
Q Consensus 369 ~l~~~~~~~G~~~s~~~a~l~l~~L~tl~~-r~~~~~~na~~L----a~~L~~ 416 (531)
.++.....++...++..++.+..+++.+.. +++++.++++.+ .+.|.+
T Consensus 227 ~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 279 (374)
T 2aeu_A 227 KIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNK 279 (374)
T ss_dssp HHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988877667777788877777778877644 667777777666 466544
No 63
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.91 E-value=3.8e-23 Score=215.32 Aligned_cols=255 Identities=15% Similarity=0.108 Sum_probs=182.2
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-------CHHHHHHhccCCC
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-------DMEGLEAALNNNN 286 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-------d~e~Le~al~~~~ 286 (531)
..++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|+++..++.+ |+++|+++ +
T Consensus 90 ~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~----~ 161 (391)
T 3h14_A 90 DPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQI----LRALGLVPVDLPTAPENRLQPVPADFAGL----D 161 (391)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEECCGGGTTSCCHHHHTTS----C
T ss_pred CHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHH----HHHcCCEEEEeecCcccCCCCCHHHHHhc----C
Confidence 356889999999999999999999999999999999886643 34568888777643 77888776 3
Q ss_pred cEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc----cccccc-CCcEEEECCccccccCCCceEE
Q 009604 287 VSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL-GADLVLHSATKFIGGHNDVLAG 358 (531)
Q Consensus 287 tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~----~~~l~~-gaDivv~S~sK~lgg~g~v~gG 358 (531)
+++|++++|+||||.+++ +++|+++|+++|++||+|++|+.... ...... +.++++.|+||.++..|. ..|
T Consensus 162 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G 240 (391)
T 3h14_A 162 LAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGW-RVG 240 (391)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTS-CCE
T ss_pred CeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccc-eeE
Confidence 899999999999999997 78899999999999999999875321 122222 456999999999975654 468
Q ss_pred EEEeChHHHHHHHHHhhhcCCCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhh
Q 009604 359 SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR---GMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHH 435 (531)
Q Consensus 359 ~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~---~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~ 435 (531)
++++++++++.+.......+.+.++...+.+.. ..+.+..+.++..++++.+.+.|++++.+ .+..|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~-------- 311 (391)
T 3h14_A 241 WMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAGFT-RIAPPD-------- 311 (391)
T ss_dssp EEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CBCCCC--------
T ss_pred EEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCC-cccCCC--------
Confidence 888999999988877666655556555443332 33455666677778888888888876432 111111
Q ss_pred hhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC
Q 009604 436 IATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV 514 (531)
Q Consensus 436 l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGl 514 (531)
.+.++++.++........+.+.|. ..++.++.|..+.. +..++.||||++.
T Consensus 312 --------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------------~~~~~~iRis~~~ 363 (391)
T 3h14_A 312 --------GAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP--------------------ERGAGTLRFSYAR 363 (391)
T ss_dssp --------BTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT--------------------TTGGGEEEEECCS
T ss_pred --------eeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCC--------------------CCCCCeEEEEecC
Confidence 245677777531123455665543 34677776654321 0125789999998
No 64
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.91 E-value=1.1e-22 Score=215.02 Aligned_cols=273 Identities=13% Similarity=0.113 Sum_probs=183.6
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCHHHHHHhccC-------
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNN------- 284 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~d~e~Le~al~~------- 284 (531)
++++++++|++|+.+++.+++++||+|+++.|.|.+... .++..|+++..++. .|+++|+++++.
T Consensus 109 ~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~ 184 (425)
T 2r2n_A 109 MDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ----SLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAK 184 (425)
T ss_dssp EEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH----HHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSS
T ss_pred CcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH----HHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccc
Confidence 456666667799999999999999999999999988653 34556888777754 378999998862
Q ss_pred ----CCcEEEEE-eCCCCCCCcccCHH---HHHHHHHhcCCEEEEeCCCCCCcc-----ccccc---cCCcEEEECCccc
Q 009604 285 ----NNVSLFFT-ESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN-----QKALS---LGADLVLHSATKF 348 (531)
Q Consensus 285 ----~~tklV~l-esP~NPtG~v~dl~---~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~---~gaDivv~S~sK~ 348 (531)
.++++|++ ++|+||||.+++.+ +|.++|+++|++||+|++|+.... ..... .+.++++.|+||.
T Consensus 185 ~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~ 264 (425)
T 2r2n_A 185 NPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI 264 (425)
T ss_dssp STTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTT
T ss_pred cccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhh
Confidence 24888877 69999999999865 899999999999999999863211 11112 2456999999999
Q ss_pred cccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHc-CC
Q 009604 349 IGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---------LHLRVQQQNSTALRMAKILEA-HP 418 (531)
Q Consensus 349 lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t---------l~~r~~~~~~na~~La~~L~~-~p 418 (531)
++ +| ...|++++++++++.+.........+.++...+.+...++. +....++..++++.+.+.|++ .|
T Consensus 265 ~~-~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 342 (425)
T 2r2n_A 265 IS-SG-LRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLT 342 (425)
T ss_dssp TC-ST-TCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cc-Cc-cceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 97 55 34688889999988888766554445566555544444443 222334445677778888876 45
Q ss_pred CceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHH-HHHHcCCCCcccccCCcccccccCccccccCCCHHH
Q 009604 419 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK-FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSE 497 (531)
Q Consensus 419 ~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~-fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~ 497 (531)
++..+..|. .|.++++++++.. .... +.+.|...++.+..|..+.. +.
T Consensus 343 ~~~~~~~p~----------------~g~~~~~~~~~~~-~~~~~~~~~l~~~gv~v~pg~~f~~---~~----------- 391 (425)
T 2r2n_A 343 GLAEWHVPA----------------AGMFLWIKVKGIN-DVKELIEEKAVKMGVLMLPGNAFYV---DS----------- 391 (425)
T ss_dssp SSEEECCCS----------------BSSEEEEEETTCS-CCHHHHHTHHHHTTEECEEGGGGSS---ST-----------
T ss_pred CCeEEeCCC----------------ceEEEEEEeCCCC-CHHHHHHHHHHHCCcEEechhhhcC---CC-----------
Confidence 553333332 4678899997521 1122 34445445777776654321 00
Q ss_pred HHhcCCCCCeEEEEecCCC---HHHHHHHHHHHHH
Q 009604 498 RLKYGIMDNLVRFSFGVED---FEDLKADVLQALH 529 (531)
Q Consensus 498 ~~~~gi~~~lIRlSvGlE~---~edli~dL~~AL~ 529 (531)
+..++.||||++..+ .++.++.|.++++
T Consensus 392 ----~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~ 422 (425)
T 2r2n_A 392 ----SAPSPYLRASFSSASPEQMDVAFQVLAQLIK 422 (425)
T ss_dssp ----TSCCCEEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 012578999998433 3444555555554
No 65
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.91 E-value=8.8e-23 Score=212.24 Aligned_cols=271 Identities=14% Similarity=0.088 Sum_probs=188.6
Q ss_pred CC-cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------CCHHHHHHhccCCCc
Q 009604 215 AE-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ADMEGLEAALNNNNV 287 (531)
Q Consensus 215 ~e-~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------~d~e~Le~al~~~~t 287 (531)
.+ +++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|+++..++. .|+++|++++++ ++
T Consensus 90 ~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~ 164 (386)
T 1u08_A 90 ADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPA----IALSGGIVKRMALQPPHFRVDWQEFAALLSE-RT 164 (386)
T ss_dssp TTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEECCTTTCCCCHHHHHHHCCT-TE
T ss_pred CCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeecCcccCcCCHHHHHHhhcc-cC
Confidence 45 788889999999999999999999999999999986543 3445777777653 479999999986 49
Q ss_pred EEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-------cccc--ccCCcEEEECCccccccCCCc
Q 009604 288 SLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL--SLGADLVLHSATKFIGGHNDV 355 (531)
Q Consensus 288 klV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-------~~~l--~~gaDivv~S~sK~lgg~g~v 355 (531)
++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..... ...+ ..+.|+++.|+||.++.+|.
T Consensus 165 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~- 243 (386)
T 1u08_A 165 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGW- 243 (386)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGG-
T ss_pred EEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCccc-
Confidence 99999999999999986 68899999999999999999875321 1111 24689999999999986653
Q ss_pred eEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCC
Q 009604 356 LAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSH 431 (531)
Q Consensus 356 ~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~ 431 (531)
..|++++++++++.++..........++.....+...++. +....++..++++.+.+.|+++ ++. +..|.
T Consensus 244 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---- 317 (386)
T 1u08_A 244 KVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES-RLE-ILPCE---- 317 (386)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS-SCE-ECCCC----
T ss_pred ceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCC----
Confidence 3688889999988887765433334444444444444443 3334455556777777777765 332 22111
Q ss_pred chhhhhhhhcCCcccEEEEEEcCCH-HHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEE
Q 009604 432 PEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVR 509 (531)
Q Consensus 432 p~~~l~~~~~~g~g~ivsf~l~g~~-~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIR 509 (531)
.|.++++.+++.. ....++.+.|. ..++.+..|..+.. .+ ..++.+|
T Consensus 318 ------------~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~-----------------~~~~~iR 366 (386)
T 1u08_A 318 ------------GTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA--DP-----------------FPHKLIR 366 (386)
T ss_dssp ------------BSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS--SC-----------------CCSCEEE
T ss_pred ------------ceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCC--CC-----------------CCCCEEE
Confidence 3568889886420 12345656552 34666665543211 00 1257899
Q ss_pred EEecCCCHHHHHHHHHHHHHh
Q 009604 510 FSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 510 lSvGlE~~edli~dL~~AL~~ 530 (531)
||++. +++.++.+.++|++
T Consensus 367 is~~~--~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 367 LCFAK--KESTLLAAAERLRQ 385 (386)
T ss_dssp EECCS--CHHHHHHHHHHHTT
T ss_pred EEEcC--CHHHHHHHHHHHhh
Confidence 99995 45666776666654
No 66
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.91 E-value=7.9e-24 Score=218.74 Aligned_cols=285 Identities=15% Similarity=0.162 Sum_probs=196.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCc
Q 009604 214 GAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNV 287 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~~t 287 (531)
+.+++++++||++|+.+++.++ +++||+|+++.++|.++... +...|+++.+++.+ |+++|++++++ ++
T Consensus 52 ~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~-~~ 126 (374)
T 3uwc_A 52 NAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGA----IVQAGATPVLVDSENGYVIDPEKIEAAITD-KT 126 (374)
T ss_dssp TCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTSSBCGGGTGGGCCT-TE
T ss_pred CCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCCCcCHHHHHHhCCC-Cc
Confidence 5568999999999999999999 99999999999999987643 44568888888765 89999999987 48
Q ss_pred EEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccC--CcEEEECCc--cccccCCCceEEEEEeC
Q 009604 288 SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--KFIGGHNDVLAGSISGS 363 (531)
Q Consensus 288 klV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g--aDivv~S~s--K~lgg~g~v~gG~iv~~ 363 (531)
++|+ |+||+|.+.|+++|.++|+++|+++|+|++|+.+........+ .|+++.|+| |++++++. +|+++++
T Consensus 127 ~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~ 201 (374)
T 3uwc_A 127 KAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITH 201 (374)
T ss_dssp EEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEES
T ss_pred eEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeC
Confidence 9888 8999999999999999999999999999998865433322333 799999977 99988664 7887765
Q ss_pred -hHHHHHHHHHhhh------------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ceEEeCCCCC
Q 009604 364 -GKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLK 429 (531)
Q Consensus 364 -~~li~~l~~~~~~------------~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~-v~~V~~pgl~ 429 (531)
+++.+.++..... +...+.+..+.+.+..++.+....++..++++.+.+.|.+.+. +. .|..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~ 278 (374)
T 3uwc_A 202 SDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFID---VPVRR 278 (374)
T ss_dssp CHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEE---CCCCC
T ss_pred CHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEE---eccCC
Confidence 4666776654321 1122456666665556666677777777888888888887765 42 22211
Q ss_pred CCchhhhhhhhcCCccc--EEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccc----cCCCHHHHHhcCC
Q 009604 430 SHPEHHIATQQMTGFGG--VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY----WDLSQSERLKYGI 503 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~--ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~----~~~~~~~~~~~gi 503 (531)
... ... .+.+... +...+.+.|...++.++.|....+.+.|..... ..++..+. +
T Consensus 279 ~~~-----------~~~~~~~~~~~~----~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 339 (374)
T 3uwc_A 279 EGV-----------YHVFHIYVLRVK----YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEK----H 339 (374)
T ss_dssp TTE-----------ECCCSSEEEEET----THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHH----H
T ss_pred CCC-----------ceeeEEEEEEcC----CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHH----H
Confidence 100 112 2333332 244566666555777777653333333322110 01111111 1
Q ss_pred CCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 504 MDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 504 ~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.++.|||+++...+++.++.+.++|++
T Consensus 340 ~~~~lrl~~~~~~t~edi~~~~~~l~~ 366 (374)
T 3uwc_A 340 GEAVITLPAHPYLTEEEINYIIKKVRE 366 (374)
T ss_dssp HHHEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred HhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 236899999998888888888777754
No 67
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.91 E-value=5.3e-23 Score=214.14 Aligned_cols=271 Identities=17% Similarity=0.109 Sum_probs=188.9
Q ss_pred CC-cEEEeCChHHHHHHHHHHhccCC-----CEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------CCHHHHHHhc
Q 009604 215 AE-STVIMASGMSASTVMLLALVPAG-----GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ADMEGLEAAL 282 (531)
Q Consensus 215 ~e-~~i~~sSG~~Ai~~al~all~pG-----D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------~d~e~Le~al 282 (531)
.+ +++++++|++|+.+++.+++++| |+|+++.+.|.+.... +...|+++..++. .|+++|++++
T Consensus 90 ~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~~g~~~d~~~l~~~~ 165 (396)
T 3jtx_A 90 ADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGA----TLLGGGEIHFANCPAPSFNPDWRSISEEV 165 (396)
T ss_dssp TTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHH----HHHTTCEEEEEECCTTTCCCCGGGSCHHH
T ss_pred CCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHH----HHHcCCEEEEeecCCCCCccCHHHHHHhh
Confidence 45 78888888899999999999997 7999999999876543 4456888777764 2778898888
Q ss_pred cCCCcEEEEEeCCCCCCCcccCHHH---HHHHHHhcCCEEEEeCCCCCCccc--cc---c--------ccCCcEEEECCc
Q 009604 283 NNNNVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTFATPLNQ--KA---L--------SLGADLVLHSAT 346 (531)
Q Consensus 283 ~~~~tklV~lesP~NPtG~v~dl~~---I~~la~~~gi~lIvD~a~a~~~~~--~~---l--------~~gaDivv~S~s 346 (531)
++ ++++|++++|+||||.+++.++ |+++|+++|++||+|++|...... .+ + ..+.++++.|+|
T Consensus 166 ~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 244 (396)
T 3jtx_A 166 WK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLS 244 (396)
T ss_dssp HH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEEST
T ss_pred cc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccc
Confidence 77 4999999999999999987555 888999999999999998753221 11 1 256789999999
Q ss_pred cccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCceEE
Q 009604 347 KFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHPKVKRV 423 (531)
Q Consensus 347 K~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L---~tl~~r~~~~~~na~~La~~L~~~p~v~~V 423 (531)
|.++.+|. ..|++++++++++.+.......+...++...+.+...+ +.+..+.++..++.+.+.+.|+++.. +
T Consensus 245 K~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~ 320 (396)
T 3jtx_A 245 KRSNVPGL-RSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFD---V 320 (396)
T ss_dssp TTSSCGGG-CCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTTSC---C
T ss_pred cccCCccc-ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC---c
Confidence 98876654 46888999999999887766666666666655555455 34455555666777778888876421 1
Q ss_pred eCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCCcccccCCcccccccCccccccCCCHHHHHhcC
Q 009604 424 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 502 (531)
Q Consensus 424 ~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~g 502 (531)
..| ..|.++++.+++ .....+.+.| +..++.++.|..+..-. +. .+
T Consensus 321 ~~~----------------~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~------~~---------~~ 367 (396)
T 3jtx_A 321 KLP----------------DASFYIWLKVPD--GDDLAFARNLWQKAAIQVLPGRFLARDT------EQ---------GN 367 (396)
T ss_dssp CCC----------------SSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCCCC------TT---------CC
T ss_pred cCC----------------CeeEEEEEECCC--CCHHHHHHHHHHHCCEEEeCChHhCCcc------cc---------cC
Confidence 111 135688888864 2234555555 44577777776543210 00 01
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 503 IMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 503 i~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
..++.||||++. + ++.++.+.++|.
T Consensus 368 ~~~~~iRis~~~-~-~~~i~~~l~~l~ 392 (396)
T 3jtx_A 368 PGEGYVRIALVA-D-VATCVKAAEDIV 392 (396)
T ss_dssp TTTTEEEEECCS-C-HHHHHHHHHHHH
T ss_pred CCCCeEEEEEcC-C-HHHHHHHHHHHH
Confidence 236899999998 3 333444444443
No 68
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.91 E-value=1.6e-23 Score=216.40 Aligned_cols=270 Identities=12% Similarity=0.083 Sum_probs=184.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---CHHHHHHhccCCCcEEEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---DMEGLEAALNNNNVSLFF 291 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---d~e~Le~al~~~~tklV~ 291 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+....+ +..|.++..++.+ |+++|+++++++ +++|+
T Consensus 81 ~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~ 155 (377)
T 3fdb_A 81 PEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLL----SATQREGIFIDATGGINLHDVEKGFQAG-ARSIL 155 (377)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHH----HHHTCCEEEEECTTSCCHHHHHHHHHTT-CCEEE
T ss_pred HHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHH----HHcCCEEEEccCCCCCCHHHHHHHhccC-CCEEE
Confidence 568899999999999999999999999999999999866443 3457777777765 899999999885 89999
Q ss_pred EeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcccc-----cc----ccCCcEEEECCccccccCCCceEEE
Q 009604 292 TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----AL----SLGADLVLHSATKFIGGHNDVLAGS 359 (531)
Q Consensus 292 lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~-----~l----~~gaDivv~S~sK~lgg~g~v~gG~ 359 (531)
+++|+||||.+++ +++|+++|+++|+++|+|++|....... ++ ..+.++++.|+||.+|..|.. .|+
T Consensus 156 i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r-~G~ 234 (377)
T 3fdb_A 156 LCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLK-CAQ 234 (377)
T ss_dssp EESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGC-CEE
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchh-heE
Confidence 9999999999986 6677778999999999999987532211 11 123458999999999766644 565
Q ss_pred EE-eChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHc-CCCceEEeCCCCCCCch
Q 009604 360 IS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEA-HPKVKRVHYPGLKSHPE 433 (531)
Q Consensus 360 iv-~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~-~p~v~~V~~pgl~s~p~ 433 (531)
++ .++++++.++..........++...+.+...++. +..+.++..++++.+.+.|++ .|++.. ..|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~------ 307 (377)
T 3fdb_A 235 IIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKI-TPMQ------ 307 (377)
T ss_dssp EECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEE-CCCS------
T ss_pred EEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceE-ecCC------
Confidence 55 5788888887655544445555555544444443 455566777888888899987 666532 2221
Q ss_pred hhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe
Q 009604 434 HHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF 512 (531)
Q Consensus 434 ~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSv 512 (531)
.+.++++.++..... .++.+.| +..++.+..|..+.. ..++.+|||+
T Consensus 308 ----------~~~~~~~~~~~~~~~-~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~~Ris~ 355 (377)
T 3fdb_A 308 ----------ATYLMWIDFRDTTIE-GSPSEFFIEKAKVAMNDGAWFGE---------------------DGTGFCRLNF 355 (377)
T ss_dssp ----------BCSEEEEECTTSCCC-SCHHHHHHHHHCEECEEGGGGCG---------------------GGTTEEEEEC
T ss_pred ----------eeEEEEEECcccCCC-HHHHHHHHHhCCEEecCChhccC---------------------CCCCEEEEEe
Confidence 234557877641011 1223332 223566666644321 0257899999
Q ss_pred cCC--CHHHHHHHHHHHHH
Q 009604 513 GVE--DFEDLKADVLQALH 529 (531)
Q Consensus 513 GlE--~~edli~dL~~AL~ 529 (531)
+.. +.++.++.|.++++
T Consensus 356 ~~~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 356 ATSREVLEEAIDRMAKAVS 374 (377)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 962 12334444555544
No 69
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.91 E-value=1.9e-23 Score=218.07 Aligned_cols=269 Identities=13% Similarity=0.104 Sum_probs=183.8
Q ss_pred EEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCcEEEEE
Q 009604 218 TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFT 292 (531)
Q Consensus 218 ~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~~tklV~l 292 (531)
+++++||++|+.+++.+++++||+|+++.+.|.+.. +...++..|+++..++.+ |+++|++++++.++++|++
T Consensus 67 v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~ 144 (411)
T 3nnk_A 67 MLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLT 144 (411)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEE
T ss_pred EEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEE
Confidence 667778899999999999999999999999997742 224456678888887654 8999999997524899999
Q ss_pred eCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHH
Q 009604 293 ESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 371 (531)
Q Consensus 293 esP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~ 371 (531)
++|+||+|.+.|+++|.++|+++|++||+|++++.+.. ......++|+++.|+||+++++.+ .|+++.++++++.++
T Consensus 145 ~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g--~g~~~~~~~~~~~~~ 222 (411)
T 3nnk_A 145 VQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSG--TSPITLSARMEEAIR 222 (411)
T ss_dssp ESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSS--EEEEEECHHHHHHHH
T ss_pred eCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCc--eEEEEECHHHHHHHh
Confidence 99999999999999999999999999999999865432 334456899999999998555432 689999999888876
Q ss_pred HHh------------------------------------hhcCCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 009604 372 NLH------------------------------------HVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRM 410 (531)
Q Consensus 372 ~~~------------------------------------~~~G~~~s~~~a~l~l~~L~t-----l~~r~~~~~~na~~L 410 (531)
... .....+.+......+...++. +....++..++++.+
T Consensus 223 ~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l 302 (411)
T 3nnk_A 223 RRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDAL 302 (411)
T ss_dssp TTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 532 001112233332222223322 345556667788888
Q ss_pred HHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CCcccccCCcccccccCcccc
Q 009604 411 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMS 489 (531)
Q Consensus 411 a~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~-~~iavS~Gg~~Sli~~p~~~s 489 (531)
.+.|++. ++. +..| +. ...+++++|.++.+ .....+.+.|.. .++.+..|..
T Consensus 303 ~~~L~~~-g~~-~~~~-----~~--------~~~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~----------- 355 (411)
T 3nnk_A 303 VKGIQAM-GLE-TFGD-----LK--------HKMNNVLGVVIPQG-INGDQARKLMLEDFGIEIGTSFG----------- 355 (411)
T ss_dssp HHHHHHT-TCC-BCSC-----GG--------GBCSSEEEEECCTT-CCHHHHHHHHHHHHSEEEEECCG-----------
T ss_pred HHHHHHc-CCE-eCCC-----cc--------cccccEEEEECCCC-CCHHHHHHHHHHhcCeEEeCccC-----------
Confidence 8888875 322 1111 00 12467899998632 223455555532 3555554411
Q ss_pred ccCCCHHHHHhcCCCCCeEEEEe-cCCCHHHHHHHHHHHHH
Q 009604 490 YWDLSQSERLKYGIMDNLVRFSF-GVEDFEDLKADVLQALH 529 (531)
Q Consensus 490 ~~~~~~~~~~~~gi~~~lIRlSv-GlE~~edli~dL~~AL~ 529 (531)
...++.|||++ |..++++.++.+.++|+
T Consensus 356 ------------~~~~~~iRi~~~~~~~~~~~i~~~~~~l~ 384 (411)
T 3nnk_A 356 ------------PLHGKVWRIGTMGYNARKDCVMTTLSALE 384 (411)
T ss_dssp ------------GGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEeCccCcCCHHHHHHHHHHHH
Confidence 01257899998 87655555555555443
No 70
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=2.6e-23 Score=215.00 Aligned_cols=261 Identities=13% Similarity=0.061 Sum_probs=182.7
Q ss_pred CcEEEeCChHHHHHHHHHHhccC-------------CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHH
Q 009604 216 ESTVIMASGMSASTVMLLALVPA-------------GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEG 277 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~p-------------GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~ 277 (531)
++++++++|++|+.+++.++..+ ||+|+++.+.|.+....+ +..|+++..++.+ |+++
T Consensus 87 ~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~ 162 (397)
T 3f9t_A 87 AYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGR----EMMDLEYIYAPIKEDYTIDEKF 162 (397)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHH----HHHTCEEEEECBCTTSSBCHHH
T ss_pred CCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHH----HHcCceeEEEeeCCCCcCCHHH
Confidence 56788999999999999998776 999999999999866444 3348888888764 8999
Q ss_pred HHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc---------------ccccccCCcEEE
Q 009604 278 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---------------QKALSLGADLVL 342 (531)
Q Consensus 278 Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~---------------~~~l~~gaDivv 342 (531)
|++++++.++++|++++|+||+|.+.|+++|.++|+++|++||+|++|+.+.. ..... ++|+++
T Consensus 163 l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 241 (397)
T 3f9t_A 163 VKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSIT 241 (397)
T ss_dssp HHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEE
T ss_pred HHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEE
Confidence 99999872389999999999999999999999999999999999999874321 11123 789999
Q ss_pred ECCccccccCCCceEEEEEeChHHHHHHHHHhhhc---------CCC--chHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 009604 343 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL---------GGA--LNPNAAYLIIRG--MKTLHLRVQQQNSTALR 409 (531)
Q Consensus 343 ~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~---------G~~--~s~~~a~l~l~~--L~tl~~r~~~~~~na~~ 409 (531)
.|++|+++++.. +|++++.++.+.+.++...... |.. .+....+.++.. ...+..+.++..++++.
T Consensus 242 ~s~~K~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T 3f9t_A 242 IDPHKMGHCPIP-SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLY 320 (397)
T ss_dssp CCTTTTTCCCSS-CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EccccccCCCCC-ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999866543 3445555555554442211111 111 133333333332 33455667777788899
Q ss_pred HHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCcccc
Q 009604 410 MAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS 489 (531)
Q Consensus 410 La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s 489 (531)
+.+.|+++ ++..+ .+. .+++++|.++. ...+.+.|...++.++.|+
T Consensus 321 l~~~L~~~-g~~~~-~~~----------------~~~~~~~~~~~----~~~~~~~l~~~gi~v~~~~------------ 366 (397)
T 3f9t_A 321 LYKKLKEN-NFKPV-IEP----------------ILNIVAIEDED----YKEVCKKLRDRGIYVSVCN------------ 366 (397)
T ss_dssp HHHHHHHT-TCCBS-SCC----------------SSSEEEEECTT----HHHHHHHHHHTTCBCEECS------------
T ss_pred HHHHHHHC-CCEEE-cCC----------------CccEEEEEeCC----HHHHHHHHHhCCeEEeccC------------
Confidence 99999887 43221 121 35788888754 3455555544455554432
Q ss_pred ccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 490 YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 490 ~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.++.|||+++...+++.++.+.++|++
T Consensus 367 --------------~~~~~Ri~~~~~~~~e~i~~~~~~l~~ 393 (397)
T 3f9t_A 367 --------------CVKALRIVVMPHIKREHIDNFIEILNS 393 (397)
T ss_dssp --------------SSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred --------------CCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 147899999987777777777777654
No 71
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.91 E-value=3.8e-23 Score=214.21 Aligned_cols=264 Identities=14% Similarity=0.099 Sum_probs=185.3
Q ss_pred cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEEE
Q 009604 217 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFF 291 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV~ 291 (531)
+++++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|+++..++. .|+++|++++++ ++++|+
T Consensus 89 ~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 163 (376)
T 2dou_A 89 EALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAA----RVASLRTFLIPLREDGLADLKAVPEGVWR-EAKVLL 163 (376)
T ss_dssp SEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHTTCEEEEECBCTTSSBCGGGSCHHHHH-HEEEEE
T ss_pred cEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHH----HHcCCEEEEeeCCCCCCCCHHHHHHhhcc-CceEEE
Confidence 6788888889999999999999999999999998865433 445888877764 367888888875 489999
Q ss_pred EeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc----ccccc----cCCcEEEECCccccccCCCceEEEE
Q 009604 292 TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS----LGADLVLHSATKFIGGHNDVLAGSI 360 (531)
Q Consensus 292 lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~----~~~l~----~gaDivv~S~sK~lgg~g~v~gG~i 360 (531)
+++|+||||.+.+ +++|.++|+++|++||+|++|..... ..... .+.++++.|+||.++.+|. ..|++
T Consensus 164 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~ 242 (376)
T 2dou_A 164 LNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGF-RLGFA 242 (376)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGG-CCEEE
T ss_pred ECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhh-eeEEE
Confidence 9999999999987 67888999999999999999875321 11222 2467999999999986553 46888
Q ss_pred EeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhh
Q 009604 361 SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 436 (531)
Q Consensus 361 v~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l 436 (531)
++++++++.++......+...++...+.+...++. +....++..++++.+.+.|+++ + .+..|.
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~-~~~~~~--------- 310 (376)
T 2dou_A 243 LGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--L-SLLPPR--------- 310 (376)
T ss_dssp EECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--S-EECCCC---------
T ss_pred ecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--c-CccCCC---------
Confidence 99999999888766655544555555544444433 3444555667788888888775 3 222121
Q ss_pred hhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC
Q 009604 437 ATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED 516 (531)
Q Consensus 437 ~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~ 516 (531)
.|.+++++++.+ ....++.+.|...++.+..|..+.. -.++.||||++. +
T Consensus 311 -------~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~f~~---------------------~~~~~~Ris~~~-~ 360 (376)
T 2dou_A 311 -------ATMYLWGRLPEG-VDDLEFGLRLVERGVALAPGRGFGP---------------------GGKGFVRIALVR-P 360 (376)
T ss_dssp -------BSSEEEEECCTT-CCHHHHHHHHHHTTEECEEGGGGCG---------------------GGTTEEEEECCS-C
T ss_pred -------eeEEEEEECCCC-CCHHHHHHHHHHCCEEEcCchhhCC---------------------CCCCeEEEEecC-C
Confidence 345788888642 2234566666544766666543210 025789999997 3
Q ss_pred HHHHHHHHHHHHH
Q 009604 517 FEDLKADVLQALH 529 (531)
Q Consensus 517 ~edli~dL~~AL~ 529 (531)
++.++.+.++|+
T Consensus 361 -~~~i~~~l~~l~ 372 (376)
T 2dou_A 361 -LEELLEAAKRIR 372 (376)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 444555555554
No 72
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.91 E-value=1.5e-22 Score=211.82 Aligned_cols=273 Identities=16% Similarity=0.182 Sum_probs=189.5
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----------------CCHHHHH
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----------------ADMEGLE 279 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----------------~d~e~Le 279 (531)
++++++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|.++..++. .|+++|+
T Consensus 86 ~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~ 161 (410)
T 3e2y_A 86 EEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMV----RMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELE 161 (410)
T ss_dssp TSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHH
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEeccccccccccccccCCcCCHHHHH
Confidence 57788888889999999999999999999999999866443 345777666653 3899999
Q ss_pred HhccCCCcEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccc----cCCcEEEECCcc
Q 009604 280 AALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS----LGADLVLHSATK 347 (531)
Q Consensus 280 ~al~~~~tklV~lesP~NPtG~v~---dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~----~gaDivv~S~sK 347 (531)
+++++ ++++|++++|+||||.++ ++++|+++|+++|+++|+|++|..... ..... .+.++++.|+||
T Consensus 162 ~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 240 (410)
T 3e2y_A 162 SKFSS-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGK 240 (410)
T ss_dssp TTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHH
T ss_pred hhcCC-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchh
Confidence 99987 499999999999999996 688999999999999999999864321 11111 234599999999
Q ss_pred ccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHc
Q 009604 348 FIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----------LHLRVQQQNSTALRMAKILEA 416 (531)
Q Consensus 348 ~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t-----------l~~r~~~~~~na~~La~~L~~ 416 (531)
.++.+|. ..|++++++++++.++..........++...+.+...++. +....++..++++.+.+.|++
T Consensus 241 ~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 319 (410)
T 3e2y_A 241 TFSVTGW-KLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNS 319 (410)
T ss_dssp HSSCGGG-CCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCc-eEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986653 4689999999998888766544445566655555555542 445556667788888999987
Q ss_pred CCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC---H-------HHHHHHHHHc-CCCCcccccCCcccccccC
Q 009604 417 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---L-------TATIKFIDAL-KIPYIAPSFGGCESIVDQP 485 (531)
Q Consensus 417 ~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~---~-------~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p 485 (531)
+ ++. +..|. .|.++++.+... . .....+...+ +..++.+..|+.+... +
T Consensus 320 ~-g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~--~ 379 (410)
T 3e2y_A 320 V-GLK-PIVPD----------------GGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDS--K 379 (410)
T ss_dssp T-TCE-EEBCS----------------BSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCT--T
T ss_pred C-CCe-ecCCC----------------ccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCC--C
Confidence 6 443 23332 355777777420 0 0122444432 3456777777554210 0
Q ss_pred ccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 486 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 486 ~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
... ..++.||||++. +++.++...++|++
T Consensus 380 --------~~~------~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 380 --------SKP------HFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp --------THH------HHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred --------CCC------CCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 000 025899999998 55556666666654
No 73
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.91 E-value=2.8e-22 Score=212.31 Aligned_cols=268 Identities=13% Similarity=0.128 Sum_probs=183.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccCCCc
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNNNV 287 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~~~~t 287 (531)
.++++++++|++|+.+++..++++||+|+++.+.|.+... .++..|+++..++. .|+++|+++++++ +
T Consensus 118 ~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~ 192 (427)
T 3dyd_A 118 AKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT----LAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEK-T 192 (427)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTT-E
T ss_pred hHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH----HHHHcCCEEEEEecccccCCCCCHHHHHHHhccC-C
Confidence 5788889999999999999999999999999999987553 34455777776643 2899999999874 9
Q ss_pred EEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccccCCc---EEEECCccccccCCCce
Q 009604 288 SLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGAD---LVLHSATKFIGGHNDVL 356 (531)
Q Consensus 288 klV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~gaD---ivv~S~sK~lgg~g~v~ 356 (531)
++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..... .....++.| +++.|+||.++..|.+
T Consensus 193 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~r- 271 (427)
T 3dyd_A 193 ACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWR- 271 (427)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGC-
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcc-
Confidence 99999999999999999 99999999999999999999875321 111223333 7789999998877755
Q ss_pred EEEEEeC-------hHHHHHHHHHhhhcCCCchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCceEEe
Q 009604 357 AGSISGS-------GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKILEAHPKVKRVH 424 (531)
Q Consensus 357 gG~iv~~-------~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~-----tl~~r~~~~~~na~~La~~L~~~p~v~~V~ 424 (531)
.|+++++ +++.+.+....... ...++..+..+...++ .+..+.++..++++.+.+.|+++|++. +.
T Consensus 272 iG~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~ 349 (427)
T 3dyd_A 272 LGWILIHDRRDIFGNEIRDGLVKLSQRI-LGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLR-PV 349 (427)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEE-EE
T ss_pred eEEEEecCcchhhHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ec
Confidence 4566654 35666666543322 2334444444433443 355666777788889999999887764 33
Q ss_pred CCCCCCCchhhhhhhhcCCcccEEEEEEcCC----HHHHHHHHHHc-CCCCcccccCCcccccccCccccccCCCHHHHH
Q 009604 425 YPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL 499 (531)
Q Consensus 425 ~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~----~~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~ 499 (531)
.|. .|.++++.++.. ......+++.| +..++.+..|+.+.
T Consensus 350 ~p~----------------~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~------------------- 394 (427)
T 3dyd_A 350 RPS----------------GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE------------------- 394 (427)
T ss_dssp CCS----------------BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT-------------------
T ss_pred CCC----------------eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC-------------------
Confidence 332 355777777511 01234555555 34566666554331
Q ss_pred hcCCCCCeEEEEecCC--CHHHHHHHHHHHHH
Q 009604 500 KYGIMDNLVRFSFGVE--DFEDLKADVLQALH 529 (531)
Q Consensus 500 ~~gi~~~lIRlSvGlE--~~edli~dL~~AL~ 529 (531)
.++.+|||++.. +.++.++.|.++++
T Consensus 395 ----~~~~iRis~~~~~e~i~~~l~~l~~~l~ 422 (427)
T 3dyd_A 395 ----YPNFIRVVITVPEVMMLEACSRIQEFCE 422 (427)
T ss_dssp ----CTTEEEEESCSCHHHHHHHHHHHHHHHH
T ss_pred ----CCCeEEEEECCCHHHHHHHHHHHHHHHH
Confidence 147899999852 22334444444443
No 74
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.91 E-value=1.4e-22 Score=208.07 Aligned_cols=263 Identities=16% Similarity=0.157 Sum_probs=187.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSL 289 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tkl 289 (531)
.++++++++|++|+.+++..+ |+|+++.+.|.+....+ +..|+++..++. .++++|++++++ +++
T Consensus 78 ~~~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~l~~~l~~--~~~ 147 (361)
T 3ftb_A 78 DIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEINA----KKHGVSVVFSYLDENMCIDYEDIISKIDD--VDS 147 (361)
T ss_dssp SCEEEEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHH----HHTTCEEEEEECCTTSCCCHHHHHHHTTT--CSE
T ss_pred cceEEEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHH----HHcCCeEEEeecCcccCCCHHHHHHhccC--CCE
Confidence 567788888889999999877 99999999999866443 445888887763 367999999976 899
Q ss_pred EEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc---cccc----ccCCcEEEECCccccccCCCceEEE
Q 009604 290 FFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---QKAL----SLGADLVLHSATKFIGGHNDVLAGS 359 (531)
Q Consensus 290 V~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~---~~~l----~~gaDivv~S~sK~lgg~g~v~gG~ 359 (531)
|++++|+||||.+.+ +++|+++|+++|+++|+|++|..... .... ..+.++++.|+||.++.+|.. .|+
T Consensus 148 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r-~g~ 226 (361)
T 3ftb_A 148 VIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIR-FGY 226 (361)
T ss_dssp EEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGC-CEE
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcc-eeE
Confidence 999999999999986 56777888899999999999864322 1111 223458899999999866544 566
Q ss_pred EE-eChHHHHHHHHHhhhcCCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhh
Q 009604 360 IS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHH 435 (531)
Q Consensus 360 iv-~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L---~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~ 435 (531)
++ +++++++.++.....+ ..++...+.+...+ +.+..+.++..++++.+.+.|+++|++..+..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--------- 295 (361)
T 3ftb_A 227 GITNNKEIAAKIKAKQNPW--NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP--------- 295 (361)
T ss_dssp EEESCHHHHHHHHTTSCTT--CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC---------
T ss_pred EEeCCHHHHHHHHhhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC---------
Confidence 66 8889888887655433 34455444444333 445566677778889999999988876423322
Q ss_pred hhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC
Q 009604 436 IATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE 515 (531)
Q Consensus 436 l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE 515 (531)
.|++++|.+++ ....++.+.|...++.++.|..+. +..++.||||++.+
T Consensus 296 --------~~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~~---------------------~~~~~~iRis~~~~ 344 (361)
T 3ftb_A 296 --------HANFVLCRLEN--ISGEKLYDSLLKEDIVIRRCCNFI---------------------GLDDSFVRFAIKDE 344 (361)
T ss_dssp --------SSSEEEEEESS--SCHHHHHHHHHTTTEECEECTTST---------------------TCCTTEEEEECCCH
T ss_pred --------CCeEEEEEcCC--CCHHHHHHHHHHCCeEEeeCccCC---------------------CCCCCEEEEEcCCH
Confidence 35688899875 234567777765577777664431 12368999999954
Q ss_pred C-HHHHHHHHHHHHHh
Q 009604 516 D-FEDLKADVLQALHA 530 (531)
Q Consensus 516 ~-~edli~dL~~AL~~ 530 (531)
+ .+++++.|.+.++.
T Consensus 345 ~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 345 KKNTKFLRALKGVENN 360 (361)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3 35666666665543
No 75
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.91 E-value=5.1e-23 Score=215.22 Aligned_cols=271 Identities=11% Similarity=0.075 Sum_probs=183.8
Q ss_pred CcEE-EeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCcEE
Q 009604 216 ESTV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSL 289 (531)
Q Consensus 216 e~~i-~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~~tkl 289 (531)
+..+ +++||++|+.+++.+++++||+|+++.+.|.+.. +...++..|+++.+++.+ |+++|++++++.++++
T Consensus 62 ~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 139 (416)
T 3isl_A 62 RWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKI 139 (416)
T ss_dssp SEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred CcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcE
Confidence 3344 7788889999999999999999999999987732 334556678888888754 8999999998324899
Q ss_pred EEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHHH
Q 009604 290 FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT 368 (531)
Q Consensus 290 V~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~ 368 (531)
|++++|+||||.+.|+++|.++|+++|++||+|++++.+.. .+....++|+++.|+||+++++.+ .|+++.++++++
T Consensus 140 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g--~g~~~~~~~~~~ 217 (416)
T 3isl_A 140 VAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSG--MAPITYNERVAD 217 (416)
T ss_dssp EEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSS--EEEEEECHHHHH
T ss_pred EEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCC--eEEEEECHHHHH
Confidence 99999999999999999999999999999999999875432 334456899999999998554433 688889998888
Q ss_pred HHHHHh--------------------------------------hhcCCCchHHHHHHHHHHHHH-----HHHHHHHHHH
Q 009604 369 QIRNLH--------------------------------------HVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNS 405 (531)
Q Consensus 369 ~l~~~~--------------------------------------~~~G~~~s~~~a~l~l~~L~t-----l~~r~~~~~~ 405 (531)
.+.... .....+.+......+...++. +....++..+
T Consensus 218 ~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~ 297 (416)
T 3isl_A 218 VIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRH 297 (416)
T ss_dssp HHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 776321 001112233332222223322 4455566677
Q ss_pred HHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CCcccccCCccccccc
Q 009604 406 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQ 484 (531)
Q Consensus 406 na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~-~~iavS~Gg~~Sli~~ 484 (531)
+++.+.+.|++. ++. +..|. . ...+++++|.++.+ ....++.+.|.. .++.++.|..
T Consensus 298 ~~~~l~~~L~~~-g~~-~~~~~-----~--------~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gi~v~~g~~------ 355 (416)
T 3isl_A 298 HEAALAAGIKAM-GLR-LFGDD-----S--------CKMPVVTCVEIPGG-IDGESVRDMLLAQFGIEIASSFG------ 355 (416)
T ss_dssp HHHHHHHHHHHT-TCC-BCSCG-----G--------GBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECBCCCS------
T ss_pred HHHHHHHHHHHc-CCE-eccCc-----c--------ccCCcEEEEeCCCC-CCHHHHHHHHHHhCCEEEecCCC------
Confidence 888888888874 332 11111 0 11467899998532 234566666643 3666665521
Q ss_pred CccccccCCCHHHHHhcCCCCCeEEEEecC-CC----HHHHHHHHHHHHH
Q 009604 485 PAIMSYWDLSQSERLKYGIMDNLVRFSFGV-ED----FEDLKADVLQALH 529 (531)
Q Consensus 485 p~~~s~~~~~~~~~~~~gi~~~lIRlSvGl-E~----~edli~dL~~AL~ 529 (531)
...++.|||+++. .+ .+++++.|.++++
T Consensus 356 -----------------~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~ 388 (416)
T 3isl_A 356 -----------------PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLL 388 (416)
T ss_dssp -----------------TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHH
Confidence 1235799999933 33 3444555555444
No 76
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.91 E-value=5.4e-23 Score=213.86 Aligned_cols=269 Identities=12% Similarity=0.132 Sum_probs=185.3
Q ss_pred CCc-EEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccCCC
Q 009604 215 AES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~-~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~~~~ 286 (531)
.++ ++++++|++|+.+++.+++++||+|+++.++|.+....+ +..|+++..++. .|+++|++++++ +
T Consensus 86 ~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~ 160 (389)
T 1gd9_A 86 PKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAV----ILAGGKPVEVPTYEEDEFRLNVDELKKYVTD-K 160 (389)
T ss_dssp TTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHH----HHHTCEEEEEECCGGGTTCCCHHHHHHHCCT-T
T ss_pred CCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHCCCEEEEeccCCccCCCCCHHHHHHhcCc-C
Confidence 456 888899999999999999999999999999999866443 345777776653 278999999987 4
Q ss_pred cEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc-----cccc----cCCcEEEECCccccccCCC
Q 009604 287 VSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS----LGADLVLHSATKFIGGHND 354 (531)
Q Consensus 287 tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~-----~~l~----~gaDivv~S~sK~lgg~g~ 354 (531)
+++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.+... .... .+.|+++.|+||.++.+|.
T Consensus 161 ~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 240 (389)
T 1gd9_A 161 TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGW 240 (389)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGG
T ss_pred ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCccc
Confidence 999999999999999984 889999999999999999998764321 1122 3578999999999986653
Q ss_pred ceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCC
Q 009604 355 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 428 (531)
Q Consensus 355 v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~------tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl 428 (531)
..|++++++++++.++..........++...+.+...++ .+....++..++++.+.+.|+++ ++. +..|.
T Consensus 241 -r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~- 316 (389)
T 1gd9_A 241 -RLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLP-TVKPK- 316 (389)
T ss_dssp -CCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCC-
T ss_pred -ceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCe-ecCCC-
Confidence 368999999998888776554444455554444444443 23444555667788888888876 332 11110
Q ss_pred CCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009604 429 KSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL 507 (531)
Q Consensus 429 ~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~l 507 (531)
.|.++++.++.......++.+.|. ..++.+..|..+.. ..++.
T Consensus 317 ---------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~ 360 (389)
T 1gd9_A 317 ---------------GAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK---------------------AGEGY 360 (389)
T ss_dssp ---------------BTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG---------------------GGTTB
T ss_pred ---------------eeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCe
Confidence 234567777520013456666664 55666665543210 02578
Q ss_pred EEEEecCCCH---HHHHHHHHHHHH
Q 009604 508 VRFSFGVEDF---EDLKADVLQALH 529 (531)
Q Consensus 508 IRlSvGlE~~---edli~dL~~AL~ 529 (531)
||||++. +. ++.++.|.++++
T Consensus 361 iRi~~~~-~~~~i~~~l~~l~~~~~ 384 (389)
T 1gd9_A 361 VRISYAT-AYEKLEEAMDRMERVLK 384 (389)
T ss_dssp EEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred EEEEecC-CHHHHHHHHHHHHHHHH
Confidence 9999997 33 333444444443
No 77
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.91 E-value=9.3e-23 Score=214.36 Aligned_cols=275 Identities=14% Similarity=0.170 Sum_probs=190.1
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----------------CCHHHH
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----------------ADMEGL 278 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----------------~d~e~L 278 (531)
++++++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|.++..++. .|+++|
T Consensus 92 ~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l 167 (422)
T 3fvs_A 92 RNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMT----MMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMEL 167 (422)
T ss_dssp HHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHH
T ss_pred CcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHH----HHcCCEEEEEecccccccccccccccCCCCCHHHH
Confidence 46888888889999999999999999999999999865433 345777766642 388999
Q ss_pred HHhccCCCcEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccc----cCCcEEEECCc
Q 009604 279 EAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS----LGADLVLHSAT 346 (531)
Q Consensus 279 e~al~~~~tklV~lesP~NPtG~v~---dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~----~gaDivv~S~s 346 (531)
++++++ ++++|++++|+||||.++ ++++|.++|+++|++||+|++|+.... ..... .+.++++.|+|
T Consensus 168 ~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~s 246 (422)
T 3fvs_A 168 AGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAG 246 (422)
T ss_dssp HTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHH
T ss_pred HhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecch
Confidence 999987 499999999999999999 589999999999999999999875321 11111 24569999999
Q ss_pred cccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q 009604 347 KFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----------LHLRVQQQNSTALRMAKILE 415 (531)
Q Consensus 347 K~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t-----------l~~r~~~~~~na~~La~~L~ 415 (531)
|.++.+|. ..|++++++++++.+...........++...+.+...++. +....++..++++.+.+.|+
T Consensus 247 K~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 325 (422)
T 3fvs_A 247 KTFSATGW-KVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQ 325 (422)
T ss_dssp HHHTCGGG-CCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCccc-eEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985553 4688999999988887766544444555555555555543 44555667788888999998
Q ss_pred cCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHH------------HHHHHHH-cCCCCcccccCCccccc
Q 009604 416 AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA------------TIKFIDA-LKIPYIAPSFGGCESIV 482 (531)
Q Consensus 416 ~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~------------~~~fl~~-L~~~~iavS~Gg~~Sli 482 (531)
++ ++. +..|. .|.++++.++..... ..++... ++..++.++.|+.+..-
T Consensus 326 ~~-g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~ 387 (422)
T 3fvs_A 326 SV-GLK-PIIPQ----------------GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV 387 (422)
T ss_dssp TT-TCE-EEBCS----------------BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCH
T ss_pred Hc-CCe-ecCCC----------------eeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCC
Confidence 76 443 23332 356777777421000 3345554 34457777777554210
Q ss_pred ccCccccccCCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHHh
Q 009604 483 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA 530 (531)
Q Consensus 483 ~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE--~~edli~dL~~AL~~ 530 (531)
+ .....++.||||++.. +.++.++.|.+++++
T Consensus 388 --~--------------~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 388 --P--------------HQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp --H--------------HHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred --c--------------CCCCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 0 0012368999999982 223445555555543
No 78
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.91 E-value=5.6e-23 Score=217.04 Aligned_cols=276 Identities=16% Similarity=0.143 Sum_probs=189.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--cCCC--EEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHHhccC
Q 009604 215 AESTVIMASGMSASTVMLLALV--PAGG--HIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEAALNN 284 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all--~pGD--~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~al~~ 284 (531)
.++++++++|++|+.+++.+++ ++|| +|+++.++|.+....+ ...|+++..++.+ |+++|+++++.
T Consensus 105 ~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 180 (437)
T 3g0t_A 105 ARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQC----RILGQKFESFDLFEYRGEKLREKLESYLQT 180 (437)
T ss_dssp GGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHH----HHHTCCCEEEEGGGGCTTHHHHHHHHHHTT
T ss_pred cccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHH----HHcCCEEEEEeecCCCCccCHHHHHHHHhc
Confidence 5678888888899999999998 9999 9999999998866544 3346666666542 78999999933
Q ss_pred CCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----c--------ccc-ccCCcEEEECCcc
Q 009604 285 NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----Q--------KAL-SLGADLVLHSATK 347 (531)
Q Consensus 285 ~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~--------~~l-~~gaDivv~S~sK 347 (531)
.++++|++++|+||||.+++ +++|+++|+++|++||+|++|+.... . ... ..+.++++.|+||
T Consensus 181 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 260 (437)
T 3g0t_A 181 GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSK 260 (437)
T ss_dssp TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTT
T ss_pred CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCcc
Confidence 35999999999999999997 67789999999999999999864221 1 111 2456799999999
Q ss_pred ccccCCCceEEEEEeChHHHH-H-----------------HHHHhhhcCCCchHHHHHHHHHHHHH-------HHHHHHH
Q 009604 348 FIGGHNDVLAGSISGSGKLVT-Q-----------------IRNLHHVLGGALNPNAAYLIIRGMKT-------LHLRVQQ 402 (531)
Q Consensus 348 ~lgg~g~v~gG~iv~~~~li~-~-----------------l~~~~~~~G~~~s~~~a~l~l~~L~t-------l~~r~~~ 402 (531)
.++.+|. ..|++++++++++ . +...........++...+.+...++. +..+.++
T Consensus 261 ~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 339 (437)
T 3g0t_A 261 AFSYAGQ-RIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIE 339 (437)
T ss_dssp TTSCGGG-CCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred CCCCccc-eeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHH
Confidence 9986553 3688889988888 6 65544433444555555555555544 4556667
Q ss_pred HHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCccccc
Q 009604 403 QNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV 482 (531)
Q Consensus 403 ~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli 482 (531)
..++++.+.+.|+++ ++. +.+|.-...| ...+.++++.+++ .+...+.+.|...++.+..|..+..
T Consensus 340 ~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~---------~~~~~~~~~~~~~--~~~~~l~~~L~~~gi~v~~~~~~~~- 405 (437)
T 3g0t_A 340 YGRKARIMKKMFLDN-GFN-IVYDKDGNEP---------LADGFYFTVGYKG--MDSSKLIEKFVRYGMCAITLKTTGS- 405 (437)
T ss_dssp HHHHHHHHHHHHHTT-TEE-ESSCEETTEE---------CCSSSEEEEEETT--CCHHHHHHHHHHTTEECEESTTTTC-
T ss_pred HHHHHHHHHHHHHHc-CCE-EeccccCCCC---------CceeEEEEEecCC--CCHHHHHHHHHHcCeEEeeccccCC-
Confidence 778888999999887 442 2211000000 0146688888873 2345666666555776665543210
Q ss_pred ccCccccccCCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHH
Q 009604 483 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH 529 (531)
Q Consensus 483 ~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE---~~edli~dL~~AL~ 529 (531)
..++.+|||++.. +.+.+++.|.++++
T Consensus 406 --------------------~~~~~iRis~~~~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 406 --------------------KRNEAMRICTSLLPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp --------------------CCTTCEEEECSSSCGGGHHHHHHHHHHHHH
T ss_pred --------------------CCCCEEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 0136799999953 34455555555543
No 79
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.91 E-value=1.7e-22 Score=209.72 Aligned_cols=264 Identities=17% Similarity=0.146 Sum_probs=182.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhccCCC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al~~~~ 286 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|+++..++. .|+++|++++++ +
T Consensus 78 ~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-~ 152 (381)
T 1v2d_A 78 PESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPD----AFLAGAKARLVRLDLTPEGFRLDLSALEKALTP-R 152 (381)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEECEEETTEEECCHHHHHTTCCT-T
T ss_pred hhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCc-C
Confidence 35788888999999999999999999999999999986543 3455777777654 379999999987 4
Q ss_pred cEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc----cccc--ccCCcEEEECCccccccCCCceE
Q 009604 287 VSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL--SLGADLVLHSATKFIGGHNDVLA 357 (531)
Q Consensus 287 tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~----~~~l--~~gaDivv~S~sK~lgg~g~v~g 357 (531)
+++|++++|+||||.+++ +++|.++|+++|+++|+|++|..... .... ..+.|+++.|+||.++.+| ...
T Consensus 153 ~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~ 231 (381)
T 1v2d_A 153 TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATG-YRV 231 (381)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGG-GCC
T ss_pred CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcc-cce
Confidence 999999999999999986 78999999999999999999875421 1122 3478999999999998565 346
Q ss_pred EEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCC
Q 009604 358 GSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSH 431 (531)
Q Consensus 358 G~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~ 431 (531)
|++++++++++.++........+.++...+.+...++. +....++..++++.+.+.|++. ++. +..|.
T Consensus 232 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---- 305 (381)
T 1v2d_A 232 GWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLR-VYVPE---- 305 (381)
T ss_dssp EEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCC-EECCS----
T ss_pred EEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ecCCC----
Confidence 88888988888887655443434454444443344442 3344556667788888888773 432 22111
Q ss_pred chhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEE
Q 009604 432 PEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS 511 (531)
Q Consensus 432 p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlS 511 (531)
.|.++++.+++. + +...|+..++.+..|..+.. . ...++.||||
T Consensus 306 ------------~~~~~~~~~~~~-~----~~~~l~~~gi~v~~g~~~~~--~-----------------~~~~~~iRi~ 349 (381)
T 1v2d_A 306 ------------GTYFLMAELPGW-D----AFRLVEEARVALIPASAFYL--E-----------------DPPKDLFRFA 349 (381)
T ss_dssp ------------BSSEEEEECTTC-C----HHHHHHHTCEECEEGGGGCS--S-----------------SCCTTEEEEE
T ss_pred ------------cceEEEEecChH-h----HHHHHHhCCEEEecchHhCC--C-----------------CCCCCEEEEE
Confidence 245788888653 2 33334444666655543211 0 0135789999
Q ss_pred ecCCCHHHHHHHHHHHH
Q 009604 512 FGVEDFEDLKADVLQAL 528 (531)
Q Consensus 512 vGlE~~edli~dL~~AL 528 (531)
++. + ++.++.+.++|
T Consensus 350 ~~~-~-~~~i~~~~~~l 364 (381)
T 1v2d_A 350 FCK-T-EEELHLALERL 364 (381)
T ss_dssp CCS-C-HHHHHHHHHHH
T ss_pred eCC-C-HHHHHHHHHHH
Confidence 998 3 33344443333
No 80
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.91 E-value=1.6e-22 Score=208.87 Aligned_cols=263 Identities=16% Similarity=0.144 Sum_probs=183.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCC------HHHHHHhccCCCcE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD------MEGLEAALNNNNVS 288 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d------~e~Le~al~~~~tk 288 (531)
.++++++++|++++.+++.++ +||+|+++.+.|.+....+ +..|.++..++.+. ++++.+.+++ +++
T Consensus 76 ~~~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~-~~~ 148 (364)
T 1lc5_A 76 ASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRAL----AQSGCEIRRWSLREADGWQLTDAILEALTP-DLD 148 (364)
T ss_dssp GGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHH----HHTTCEEEEEECCGGGTTCCCTTHHHHCCT-TCC
T ss_pred HHHEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHH----HHcCCeEEEEeCCcccccchhHHHHHhccC-CCC
Confidence 357888888889999999988 7899999999999865433 44578877776432 3556666665 489
Q ss_pred EEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc--cccc----ccCCcEEEECCccccccCCCceEEE
Q 009604 289 LFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN--QKAL----SLGADLVLHSATKFIGGHNDVLAGS 359 (531)
Q Consensus 289 lV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~--~~~l----~~gaDivv~S~sK~lgg~g~v~gG~ 359 (531)
+|++++|+||||.+.+ +++|.++|+++|++||+|++|..+.. .... ..+.|+++.|+||+++.+|. ..|+
T Consensus 149 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~ 227 (364)
T 1lc5_A 149 CLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGL-RLGY 227 (364)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTT-CCEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCcc-ceEE
Confidence 9999999999999998 88999999999999999999875431 1111 24678999999999986653 3688
Q ss_pred EE-eChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhh
Q 009604 360 IS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHH 435 (531)
Q Consensus 360 iv-~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t---l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~ 435 (531)
++ +++++++.++.....+ ..++...+.+...++. +....++..++++.+.+.|+++|++. + +|.
T Consensus 228 ~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~-------- 295 (364)
T 1lc5_A 228 LVNSDDAAMARMRRQQMPW--SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT-V-YPG-------- 295 (364)
T ss_dssp EECCCHHHHHHHHHHSCTT--CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE-E-CCC--------
T ss_pred EEECCHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCE-E-CCC--------
Confidence 88 8999988887655433 3455555555555443 44555666678888999998877653 2 232
Q ss_pred hhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC
Q 009604 436 IATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE 515 (531)
Q Consensus 436 l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE 515 (531)
.|+++++.++.+ ..++.+.|...++.+..|..+. +..++.||||++.+
T Consensus 296 --------~g~~~~~~~~~~---~~~l~~~l~~~gi~v~~g~~~~---------------------~~~~~~iRis~~~~ 343 (364)
T 1lc5_A 296 --------RANYLLLRCERE---DIDLQRRLLTQRILIRSCANYP---------------------GLDSRYYRVAIRSA 343 (364)
T ss_dssp --------SSSEEEEEESCT---TCCHHHHHHTTTEECEECTTST---------------------TCCTTEEEEECCCH
T ss_pred --------CCeEEEEECCCc---HHHHHHHHHHCCcEEeeCcccC---------------------CCCCCEEEEEeCCH
Confidence 356788888642 2345666655577776664321 01357899999852
Q ss_pred -CHHHHHHHHHHHHH
Q 009604 516 -DFEDLKADVLQALH 529 (531)
Q Consensus 516 -~~edli~dL~~AL~ 529 (531)
+.+.+++.|.+.++
T Consensus 344 ~~~~~l~~~l~~~~~ 358 (364)
T 1lc5_A 344 AQNERLLAALRNVLT 358 (364)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 22445555554443
No 81
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.90 E-value=1.2e-22 Score=211.98 Aligned_cols=265 Identities=14% Similarity=0.133 Sum_probs=180.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCC-CEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHHhccCCCc
Q 009604 215 AESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEAALNNNNV 287 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pG-D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~al~~~~t 287 (531)
.++++++++|++|+.+++.+++++| |+|+++.+.|.+.... ++..|+++..++.+ |+++|++++++ ++
T Consensus 99 ~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~ 173 (398)
T 3ele_A 99 ADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVF----VNAAGARLVEVPADTEHFQIDFDALEERINA-HT 173 (398)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHH----HHHTTCEEEEECCCTTTSSCCHHHHHHTCCT-TE
T ss_pred hHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHH----HHHcCCEEEEEecCCcCCcCCHHHHHHHhCc-CC
Confidence 5678888888999999999999999 9999999999986543 34568888887643 89999999987 49
Q ss_pred EEEEEeCCCCCCCcccC---HHHHHHHHHh------cCCEEEEeCCCCCCcc------ccccccCCcEEEECCccccccC
Q 009604 288 SLFFTESPTNPFLRCVD---VKLVSDLCHK------KGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGH 352 (531)
Q Consensus 288 klV~lesP~NPtG~v~d---l~~I~~la~~------~gi~lIvD~a~a~~~~------~~~l~~gaDivv~S~sK~lgg~ 352 (531)
++|++++|+||||.+++ +++|+++|++ +|++||+|++|..... ......+.++++.|+||.++.+
T Consensus 174 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 253 (398)
T 3ele_A 174 RGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLP 253 (398)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCT
T ss_pred CEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCc
Confidence 99999999999999998 6677788998 9999999999875322 1111235679999999999866
Q ss_pred CCceEEEEEeChHH------HHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeC
Q 009604 353 NDVLAGSISGSGKL------VTQIRNLHHVLG-GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHY 425 (531)
Q Consensus 353 g~v~gG~iv~~~~l------i~~l~~~~~~~G-~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~ 425 (531)
|. ..|++++++++ .+.+.......+ ...+....+.+...++... ..++..++++.+.+.|++. ++. +..
T Consensus 254 G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~L~~~-g~~-~~~ 329 (398)
T 3ele_A 254 GE-RIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-DINAYKENRDLLYEGLTRI-GYH-CFK 329 (398)
T ss_dssp TT-CCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-CHHHHHHHHHHHHHHHHHH-TCC-EEC
T ss_pred cc-eeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHc-CCe-ecC
Confidence 54 36788887653 333333333322 2334444444333333211 2345567778888888765 332 222
Q ss_pred CCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCC
Q 009604 426 PGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505 (531)
Q Consensus 426 pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~ 505 (531)
|. .+.++++.+++. ....+.+.|...++.+..|..+. .+
T Consensus 330 ~~----------------~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~-----------------------~~ 368 (398)
T 3ele_A 330 PD----------------GAFYMFVKALED--DSNAFCEKAKEEDVLIVAADGFG-----------------------CP 368 (398)
T ss_dssp CS----------------BSSEEEEECSSS--CHHHHHHHHHTTTEECEESGGGT-----------------------CT
T ss_pred CC----------------eeEEEEEEcCCC--CHHHHHHHHHHCCEEEeCccccC-----------------------CC
Confidence 21 244588888643 34567777777787777764431 14
Q ss_pred CeEEEEecCC--CHHHHHHHHHHHHH
Q 009604 506 NLVRFSFGVE--DFEDLKADVLQALH 529 (531)
Q Consensus 506 ~lIRlSvGlE--~~edli~dL~~AL~ 529 (531)
+.+|||++.. +.++.++.|.++++
T Consensus 369 ~~iRis~~~~~e~i~~~l~~l~~~l~ 394 (398)
T 3ele_A 369 GWVRISYCVDREMIKHSMPAFEKIYK 394 (398)
T ss_dssp TEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 6899999852 22344455555554
No 82
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.90 E-value=8e-23 Score=208.70 Aligned_cols=265 Identities=11% Similarity=0.041 Sum_probs=182.2
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLF 290 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV 290 (531)
++++++++|++|+.+++.+++++||+|+++.+.|.+.. +...++..|+++..++. .|+++|++ + ++++|
T Consensus 52 ~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~-~~~~v 125 (352)
T 1iug_A 52 EVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAK---E-GYAGL 125 (352)
T ss_dssp EEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---S-SCSEE
T ss_pred ceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---c-CCcEE
Confidence 46778888999999999999999999999999998865 22344556888887764 25666655 3 48999
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHhc--CCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHH
Q 009604 291 FTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV 367 (531)
Q Consensus 291 ~lesP~NPtG~v~dl~~I~~la~~~--gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li 367 (531)
++++|+||||.+.|+++|.++|+++ |++||+|++++.+.. ......++|+++.|+||++++..+ .|+++.+++++
T Consensus 126 ~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~ 203 (352)
T 1iug_A 126 LLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPG--LGFVALSPRAL 203 (352)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSC--EEEEEECHHHH
T ss_pred EEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCc--eeEEEECHHHH
Confidence 9999999999999999999999999 999999999864322 222335789999999996655432 48888888876
Q ss_pred HH---------HHHHh-----hhcCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 368 TQ---------IRNLH-----HVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 368 ~~---------l~~~~-----~~~G~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
+. ++... .....+.+......+...++. +....++..++++.+.+.|++. ++. +..|.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-- 279 (352)
T 1iug_A 204 ERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLR-PVPKR-- 279 (352)
T ss_dssp HTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCE-ESCSS--
T ss_pred HHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccccc--
Confidence 54 22111 112233344333333333333 3455566677888888899876 443 22221
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEE
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVR 509 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIR 509 (531)
..+++++|.++.+ ....++.+.|...++.+..|.. + ..++.||
T Consensus 280 -------------~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~------~-----------------~~~~~iR 322 (352)
T 1iug_A 280 -------------FSPAVAAFYLPEG-VPYARVKEAFAQRGAVIAGGQG------P-----------------LKGKVFR 322 (352)
T ss_dssp -------------BCTTCEEEECCTT-CCHHHHHHHHHTTTEECEECCG------G-----------------GTTTEEE
T ss_pred -------------cCCeEEEEEcCCC-CCHHHHHHHHHHCCEEEEeCCC------c-----------------cCCCEEE
Confidence 1357889988632 2345677777666777665531 0 0257899
Q ss_pred EEecCCCHHHHHHHHHHHHH
Q 009604 510 FSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 510 lSvGlE~~edli~dL~~AL~ 529 (531)
|+++..++++.++.+.++|+
T Consensus 323 i~~~~~~~~~~i~~~~~~l~ 342 (352)
T 1iug_A 323 LSLMGAYDRYEALGVAGMFR 342 (352)
T ss_dssp ECCCSSCCHHHHHHHHHHHH
T ss_pred EEccccCCHHHHHHHHHHHH
Confidence 99998766666666665554
No 83
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.90 E-value=5.1e-23 Score=214.07 Aligned_cols=270 Identities=14% Similarity=0.152 Sum_probs=188.0
Q ss_pred cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEEE
Q 009604 217 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFF 291 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV~ 291 (531)
+++++++|++|+.+++.+++++||+|+++.+.|.+. .+...++..|+++..++. .|+++|++++++.++++|+
T Consensus 87 ~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~ 164 (393)
T 1vjo_A 87 TIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILA 164 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEE
T ss_pred EEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHH--HHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEE
Confidence 577788888999999999999999999999999872 122344556888877763 5899999999761389999
Q ss_pred EeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCc-cccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHH
Q 009604 292 TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI 370 (531)
Q Consensus 292 lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~-~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l 370 (531)
+++|+||||.+.|+++|.++|+++|++||+|++|+.+. .......++|+++.|+||++++++. .|++++++++++.+
T Consensus 165 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~--~G~l~~~~~~~~~~ 242 (393)
T 1vjo_A 165 LVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPG--ASPFTMSSRAIEKL 242 (393)
T ss_dssp EESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSS--CEEEEECHHHHHHH
T ss_pred EeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCc--eEEEEECHHHHHHH
Confidence 99999999999999999999999999999999987432 1222345789999999999987763 58899999888777
Q ss_pred HHH----h----------------hhcCCCchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCceEEeC
Q 009604 371 RNL----H----------------HVLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEAHPKVKRVHY 425 (531)
Q Consensus 371 ~~~----~----------------~~~G~~~s~~~a~l~l~~L~tl-----~~r~~~~~~na~~La~~L~~~p~v~~V~~ 425 (531)
+.. . ...+++.++...+.+...++.+ ....++..++++.+.+.|++. ++. +..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~ 320 (393)
T 1vjo_A 243 QRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLS-LHV 320 (393)
T ss_dssp HTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSS
T ss_pred hccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCc-ccC
Confidence 431 0 0011144554444444444443 344566677888888888875 432 111
Q ss_pred CCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-CcccccCCcccccccCccccccCCCHHHHHhcCCC
Q 009604 426 PGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 504 (531)
Q Consensus 426 pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~-~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~ 504 (531)
|. .+ ..+++++|.++.+ ....+|.+.|... ++.+..|..+. .
T Consensus 321 ~~-----~~--------~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~-----------------------~ 363 (393)
T 1vjo_A 321 EK-----EY--------RLPTLTTVCIPDG-VDGKAVARRLLNEHNIEVGGGLGEL-----------------------A 363 (393)
T ss_dssp CG-----GG--------BCSSEEEEECCTT-CCHHHHHHHHHHHHCEECEECCGGG-----------------------T
T ss_pred Cc-----cc--------cCCcEEEEEcCCC-CCHHHHHHHHHhhCCEEEecCcccc-----------------------C
Confidence 10 11 1467889988532 2345666666544 66666664211 2
Q ss_pred CCeEEEE-ecCCCHHHHHHHHHHHHH
Q 009604 505 DNLVRFS-FGVEDFEDLKADVLQALH 529 (531)
Q Consensus 505 ~~lIRlS-vGlE~~edli~dL~~AL~ 529 (531)
++.+||| +++.+.++.++.+.++|+
T Consensus 364 ~~~iRis~~~~~~~~~~i~~~~~~l~ 389 (393)
T 1vjo_A 364 GKVWRVGLMGFNSRKESVDQLIPALE 389 (393)
T ss_dssp TTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred CCEEEEeCCccCChHHHHHHHHHHHH
Confidence 5789999 576666655666665554
No 84
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.90 E-value=4.9e-22 Score=206.90 Aligned_cols=257 Identities=16% Similarity=0.068 Sum_probs=178.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhccCCC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al~~~~ 286 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+....+ +..|.++..++. .|+++|++++++.+
T Consensus 87 ~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~ 162 (390)
T 1d2f_A 87 SQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAI----EGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPE 162 (390)
T ss_dssp GGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEECEECSSSEECCHHHHHHHHTSTT
T ss_pred HHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHH----HHCCCEEEEeecccCCCccccCHHHHHHHhccCC
Confidence 467888888889999999999999999999999999866443 345777766653 58999999997635
Q ss_pred cEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccccC--C-cEEEECCccccccCCCc
Q 009604 287 VSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLG--A-DLVLHSATKFIGGHNDV 355 (531)
Q Consensus 287 tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~g--a-Divv~S~sK~lgg~g~v 355 (531)
+++|++++|+||||.+.+ +++|.++|+++|++||+|++|..... .....+. . |. +.|+||.++.+|.
T Consensus 163 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~- 240 (390)
T 1d2f_A 163 CKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPAL- 240 (390)
T ss_dssp EEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGG-
T ss_pred CeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccCh-
Confidence 999999999999999987 88999999999999999999875422 1112222 2 77 9999999985553
Q ss_pred eEEEEEe-ChHHHHHHHHHhh-hcC-CCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CCCceEEeCCC
Q 009604 356 LAGSISG-SGKLVTQIRNLHH-VLG-GALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILEA-HPKVKRVHYPG 427 (531)
Q Consensus 356 ~gG~iv~-~~~li~~l~~~~~-~~G-~~~s~~~a~l~l~~L~----tl~~r~~~~~~na~~La~~L~~-~p~v~~V~~pg 427 (531)
..|++++ ++++++.++.... ... .+.++...+.+...++ .+....++..++++.+.+.|++ .|++.. ++.
T Consensus 241 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~ 318 (390)
T 1d2f_A 241 TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNW--QIP 318 (390)
T ss_dssp CCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC--CCC
T ss_pred hheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEE--ecC
Confidence 3677777 4788888876554 223 2445554444444443 2344455566778888888887 565421 111
Q ss_pred CCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCCC
Q 009604 428 LKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 506 (531)
Q Consensus 428 l~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~ 506 (531)
..+.+++++++.......++.+.|. ..++.+..|..+.. ..++
T Consensus 319 ---------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~ 362 (390)
T 1d2f_A 319 ---------------QSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGE---------------------EGRG 362 (390)
T ss_dssp ---------------SBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCG---------------------GGTT
T ss_pred ---------------CccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCC---------------------CCCC
Confidence 0234567888631013456777775 56777776644310 0257
Q ss_pred eEEEEecCC
Q 009604 507 LVRFSFGVE 515 (531)
Q Consensus 507 lIRlSvGlE 515 (531)
.||||++..
T Consensus 363 ~~Ris~~~~ 371 (390)
T 1d2f_A 363 FVRLNAGCP 371 (390)
T ss_dssp EEEEECCSC
T ss_pred eEEEEecCC
Confidence 899999984
No 85
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.90 E-value=2.7e-22 Score=211.70 Aligned_cols=272 Identities=15% Similarity=0.145 Sum_probs=186.2
Q ss_pred CC-cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---------------CCHHHH
Q 009604 215 AE-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---------------ADMEGL 278 (531)
Q Consensus 215 ~e-~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---------------~d~e~L 278 (531)
.+ +++++++|++|+.+++.+++++||+|+++.+.|.+....+ +..|+++..++. .|+++|
T Consensus 100 ~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 175 (429)
T 1yiz_A 100 PMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMV----KAAGGIPRFIPLKPNKTGGTISSADWVLDNNEL 175 (429)
T ss_dssp TTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHH
T ss_pred CcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeCCcccccccccccCcccCHHHH
Confidence 45 6888888889999999999999999999999999866443 345777666642 478999
Q ss_pred HHhccCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-------cccc--ccCCcEEEECCc
Q 009604 279 EAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL--SLGADLVLHSAT 346 (531)
Q Consensus 279 e~al~~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-------~~~l--~~gaDivv~S~s 346 (531)
++++++ ++++|++++|+||||.+.+ +++|.++|+++|++||+|++|..... ...+ ..+.|+++.|+|
T Consensus 176 ~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~s 254 (429)
T 1yiz_A 176 EALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAG 254 (429)
T ss_dssp HHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHH
T ss_pred HHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecch
Confidence 999986 4999999999999999985 88999999999999999999874321 1112 246799999999
Q ss_pred cccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q 009604 347 KFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----------LHLRVQQQNSTALRMAKILE 415 (531)
Q Consensus 347 K~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t-----------l~~r~~~~~~na~~La~~L~ 415 (531)
|.++++|. ..|++++++++++.+...........++.....+...++. +....++..++++.+.+.|+
T Consensus 255 K~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 333 (429)
T 1yiz_A 255 KTFSLTGW-KIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLA 333 (429)
T ss_dssp HHHTCGGG-CCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCc-ceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986663 4688999999988887655433334455444444444444 33334455567777888887
Q ss_pred cCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCH-----------HHHHHHHHHcC-CCCcccccCCcccccc
Q 009604 416 AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-----------TATIKFIDALK-IPYIAPSFGGCESIVD 483 (531)
Q Consensus 416 ~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~-----------~~~~~fl~~L~-~~~iavS~Gg~~Sli~ 483 (531)
++ ++. +..|. .|.++++++++.. ....++.+.|. ..++.+..|..+...
T Consensus 334 ~~-g~~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~- 394 (429)
T 1yiz_A 334 EV-GMN-PTVPQ----------------GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE- 394 (429)
T ss_dssp HH-TCE-EEECS----------------BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCG-
T ss_pred hC-CCc-ccCCC----------------cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCC-
Confidence 65 343 22221 3568888886420 24456666653 457777666433210
Q ss_pred cCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009604 484 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 484 ~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL 528 (531)
+ + .+..++.||||++. +++.++.+.++|
T Consensus 395 -~----~----------~~~~~~~iRis~~~--~~e~i~~~l~~l 422 (429)
T 1yiz_A 395 -P----N----------KHLGEDFVRYCFFK--KDENLQKAAEIL 422 (429)
T ss_dssp -G----G----------GGGTTTEEEEECCS--CHHHHHHHHHHH
T ss_pred -c----c----------cCCCCCeEEEEecC--CHHHHHHHHHHH
Confidence 0 0 01125789999995 344444444444
No 86
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.90 E-value=1.7e-22 Score=212.38 Aligned_cols=254 Identities=14% Similarity=0.106 Sum_probs=179.6
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-------CHHHHHHhccCCCcE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-------DMEGLEAALNNNNVS 288 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-------d~e~Le~al~~~~tk 288 (531)
++++++++|++|+.+++.+++++||+|+++.+.|.+....+ +..|+++..++.+ |+++|++++++ +++
T Consensus 100 ~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~ 174 (412)
T 2x5d_A 100 SEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGA----VIAGAQVRSVPLVPGIDFFNELERAIRESIP-KPR 174 (412)
T ss_dssp TSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HHHTCEEEEEECSTTSCHHHHHHHHHHTEES-CCS
T ss_pred cCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEEeecCCccCCCCCHHHHHHhccc-Cce
Confidence 57888999999999999999999999999999999866544 3347777766542 46889999986 489
Q ss_pred EEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccc----cCCcEEEECCccccccCCCce
Q 009604 289 LFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS----LGADLVLHSATKFIGGHNDVL 356 (531)
Q Consensus 289 lV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~----~gaDivv~S~sK~lgg~g~v~ 356 (531)
+|++++|+||||.+++ +++|.++|+++|++||+|++|..... ..... .+.|+++.|+||.++.+|. .
T Consensus 175 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r 253 (412)
T 2x5d_A 175 MMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGW-R 253 (412)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTS-C
T ss_pred EEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCccc-c
Confidence 9999999999999986 67899999999999999999876432 11112 3678999999999986653 3
Q ss_pred EEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCc
Q 009604 357 AGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHP 432 (531)
Q Consensus 357 gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p 432 (531)
.|++++++++++.+.......+...++...+.+...++. +....++..++++.+.+.|+++ ++. + ++.
T Consensus 254 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~----- 325 (412)
T 2x5d_A 254 IGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWM-V-ENP----- 325 (412)
T ss_dssp CEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCC-C-CCC-----
T ss_pred eEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-e-cCC-----
Confidence 688889999998888766554455566555554445543 4445556667788888888765 332 1 111
Q ss_pred hhhhhhhhcCCcccEEEEEEcCCH--HHHHHHHHHc-CCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEE
Q 009604 433 EHHIATQQMTGFGGVVSFEVDGDL--TATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVR 509 (531)
Q Consensus 433 ~~~l~~~~~~g~g~ivsf~l~g~~--~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIR 509 (531)
..|.++++.++.+. .....+.+.| +..++.+..|..+.. ..++.||
T Consensus 326 ----------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---------------------~~~~~iR 374 (412)
T 2x5d_A 326 ----------KASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGD---------------------YGDDHVR 374 (412)
T ss_dssp ----------SBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCG---------------------GGTTEEE
T ss_pred ----------CeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCC---------------------CCCCeEE
Confidence 02447888885321 0345666666 334666666543310 0257899
Q ss_pred EEecC
Q 009604 510 FSFGV 514 (531)
Q Consensus 510 lSvGl 514 (531)
||++.
T Consensus 375 is~~~ 379 (412)
T 2x5d_A 375 FALIE 379 (412)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99998
No 87
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.90 E-value=9.5e-23 Score=213.83 Aligned_cols=270 Identities=13% Similarity=0.091 Sum_probs=181.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccCCCc
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNNNV 287 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~~~~t 287 (531)
.++++++++|++|+.+++.+++++||+|+++.++|.+....+ +..|+++..++. .|+++|++++++ ++
T Consensus 101 ~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~ 175 (406)
T 1xi9_A 101 PDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLV----KFYGGKPVEYRTIEEEDWQPDIDDIRKKITD-RT 175 (406)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEEEEGGGTSEECHHHHHHHCCT-TE
T ss_pred HHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHH----HHcCCEEEEeecCCCcCCcCCHHHHHHhhCc-Cc
Confidence 467888888889999999999999999999999998865433 445777766653 279999999987 49
Q ss_pred EEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc----ccccc--cCC-cEEEECCccccccCCCceE
Q 009604 288 SLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--LGA-DLVLHSATKFIGGHNDVLA 357 (531)
Q Consensus 288 klV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~----~~~l~--~ga-Divv~S~sK~lgg~g~v~g 357 (531)
++|++++|+||||.+++ +++|.++|+++|++||+|++|+.+.. ..... .+. |+++.|+||+++.+|.. .
T Consensus 176 ~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r-~ 254 (406)
T 1xi9_A 176 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWR-L 254 (406)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGC-C
T ss_pred eEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccE-E
Confidence 99999999999999986 88999999999999999999875432 11112 356 89999999999866543 5
Q ss_pred EEEE--eCh----HHHHHHHHHhhhcCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCC
Q 009604 358 GSIS--GSG----KLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPG 427 (531)
Q Consensus 358 G~iv--~~~----~li~~l~~~~~~~G~~~s~~~a~l~l~~L~----tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pg 427 (531)
|+++ +++ ++++.++...... ...++...+.+...++ .+....++..++++.+.+.|++.|++.. ..|.
T Consensus 255 G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~ 332 (406)
T 1xi9_A 255 GYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST-TKPQ 332 (406)
T ss_dssp EEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC-CCCC
T ss_pred EEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCee-ecCC
Confidence 7777 888 8888887655432 3344444444444443 2344445566777888888887765431 1111
Q ss_pred CCCCchhhhhhhhcCCcccEEEEEEcCC-HHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCC
Q 009604 428 LKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505 (531)
Q Consensus 428 l~s~p~~~l~~~~~~g~g~ivsf~l~g~-~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~ 505 (531)
.|.++++.++.. .....++.+.|. ..++.+..|..+.. ..+
T Consensus 333 ----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~ 375 (406)
T 1xi9_A 333 ----------------GAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE---------------------YGA 375 (406)
T ss_dssp ----------------BSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG---------------------GGT
T ss_pred ----------------eeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC---------------------CCC
Confidence 234555577520 023445666553 45666665543210 025
Q ss_pred CeEEEEecCC--CHHHHHHHHHHHHH
Q 009604 506 NLVRFSFGVE--DFEDLKADVLQALH 529 (531)
Q Consensus 506 ~lIRlSvGlE--~~edli~dL~~AL~ 529 (531)
+.||||++.. +.++.++.|.++++
T Consensus 376 ~~lRis~~~~~~~i~~~~~~l~~~l~ 401 (406)
T 1xi9_A 376 GHFRAVFLPPIEILEEAMDRFEKFMK 401 (406)
T ss_dssp TBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 7899999931 12334444445444
No 88
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.90 E-value=2.9e-22 Score=214.14 Aligned_cols=272 Identities=15% Similarity=0.112 Sum_probs=186.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCHHHHHHhcc----C-C
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALN----N-N 285 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~d~e~Le~al~----~-~ 285 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+....+ +..|+++..++. .|+++|+++++ + .
T Consensus 140 ~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~ 215 (448)
T 3aow_A 140 DNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAF----NFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGK 215 (448)
T ss_dssp TSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTC
T ss_pred hhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHH----HHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCC
Confidence 356778888889999999999999999999999999866443 445777776654 48999999987 5 2
Q ss_pred CcEEEE-EeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccc---cCCcEEEECCccccccCC
Q 009604 286 NVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS---LGADLVLHSATKFIGGHN 353 (531)
Q Consensus 286 ~tklV~-lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~---~gaDivv~S~sK~lgg~g 353 (531)
++++|+ +++|+||||.+++ +++|.++|+++|++||+|++|..... ..... .+.++++.|+||.++ +|
T Consensus 216 ~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~G 294 (448)
T 3aow_A 216 KVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PG 294 (448)
T ss_dssp CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GG
T ss_pred CCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-cc
Confidence 489985 6899999999987 56899999999999999999875422 11112 246799999999998 54
Q ss_pred CceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcC-C-CceEEeC
Q 009604 354 DVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAH-P-KVKRVHY 425 (531)
Q Consensus 354 ~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~-p-~v~~V~~ 425 (531)
...|++++++++++.+...........++...+.+...|+. +....+...++++.+.+.|+++ | ++. +..
T Consensus 295 -lriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~-~~~ 372 (448)
T 3aow_A 295 -FRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVK-WTK 372 (448)
T ss_dssp -GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE-ECC
T ss_pred -ccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EeC
Confidence 45789999999998887655433333345444444444432 3333444556778888888763 5 343 222
Q ss_pred CCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCC
Q 009604 426 PGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505 (531)
Q Consensus 426 pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~ 505 (531)
|. .|.+++++++.+ .+..+|.+.|...++.+..|..+.. .+..+
T Consensus 373 p~----------------~g~~~~v~~~~~-~~~~~l~~~l~~~gV~v~pg~~f~~-------------------~~~~~ 416 (448)
T 3aow_A 373 PE----------------GGMFIWVTLPDG-IDSKKMLERAIKKGVAYVPGEAFYA-------------------HRDVK 416 (448)
T ss_dssp CS----------------BSSEEEEECSTT-CCHHHHHHHHHHTTEECEEGGGGST-------------------TCCCC
T ss_pred CC----------------ccEEEEEEcCCC-CCHHHHHHHHHHCCcEEEcchhhcC-------------------CCCCC
Confidence 22 366889998642 2345666666544777766644321 01125
Q ss_pred CeEEEEecCC---CHHHHHHHHHHHHH
Q 009604 506 NLVRFSFGVE---DFEDLKADVLQALH 529 (531)
Q Consensus 506 ~lIRlSvGlE---~~edli~dL~~AL~ 529 (531)
+.||||++.. +.++.++.|.++++
T Consensus 417 ~~iRls~~~~~~e~i~~~~~~L~~~l~ 443 (448)
T 3aow_A 417 NTMRLNFTYVDEDKIMEGIKRLAETIK 443 (448)
T ss_dssp SEEEEECSSSCTHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 7899999974 34555666666654
No 89
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.90 E-value=2e-22 Score=208.65 Aligned_cols=232 Identities=13% Similarity=0.066 Sum_probs=166.6
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLF 290 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV 290 (531)
+.++++++|++++.+++.+++++||+|+++.+.|.+.... ++..|.++..++. .|+++|++++++.++++|
T Consensus 93 ~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~----~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v 168 (369)
T 3cq5_A 93 DNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPIL----AKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIV 168 (369)
T ss_dssp GGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHH----HHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEE
T ss_pred HhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHH----HHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEE
Confidence 4566666667999999999999999999999999886543 3445777777753 378999999875238999
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-cccc----ccC-CcEEEECCccccccCCCceEEEEEeCh
Q 009604 291 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL----SLG-ADLVLHSATKFIGGHNDVLAGSISGSG 364 (531)
Q Consensus 291 ~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l----~~g-aDivv~S~sK~lgg~g~v~gG~iv~~~ 364 (531)
++++|+||||.+.|++++.++++.+++++|+|++|+.+.. .... ..+ .++++.|+||.++.+|. ..|++++++
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~ 247 (369)
T 3cq5_A 169 FVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGG-RLGYFVANP 247 (369)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGG-CCEEEEECT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCccc-ceEEEEeCH
Confidence 9999999999999999999999999999999999875432 1222 235 67999999999985553 468888998
Q ss_pred HHHHHHHHHhhhcCCCchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhc
Q 009604 365 KLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM 441 (531)
Q Consensus 365 ~li~~l~~~~~~~G~~~s~~~a~l~l~~L~---tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~ 441 (531)
++++.++.....++ .++...+.+...++ .+..+.++..++++.+.+.|++. ++.. . |.
T Consensus 248 ~~~~~l~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~-~~-------------- 308 (369)
T 3cq5_A 248 AFIDAVMLVRLPYH--LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAV-V-PS-------------- 308 (369)
T ss_dssp HHHHHHHTTSCTTC--SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEE-E-CC--------------
T ss_pred HHHHHHHHcCCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEE-C-CC--------------
Confidence 88888876544333 45555554444444 34455566677888888888763 4432 1 22
Q ss_pred CCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccC
Q 009604 442 TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG 476 (531)
Q Consensus 442 ~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~G 476 (531)
.|+++++.++. ...++.+.|...++.+..|
T Consensus 309 --~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~~ 338 (369)
T 3cq5_A 309 --ESNFVFFGDFS---DQHAAWQAFLDRGVLIRDV 338 (369)
T ss_dssp --SSSEEEEECCS---SHHHHHHHHHHTTEECBCC
T ss_pred --CCeEEEEECCC---CHHHHHHHHHHCCEEEEEC
Confidence 35688888852 2345666665556555544
No 90
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.90 E-value=1.2e-22 Score=210.84 Aligned_cols=242 Identities=9% Similarity=0.025 Sum_probs=165.3
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccC-CCcEE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNN-NNVSL 289 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~-~~tkl 289 (531)
+.++++++|++|+.+++.+++++||+|+++.++|.+.. +...++..|+++..++. .|+++|++++++ .++++
T Consensus 60 ~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 137 (392)
T 2z9v_A 60 KPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITV 137 (392)
T ss_dssp CCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCE
T ss_pred CEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcE
Confidence 56788888899999999999999999999999998763 22334445777777764 479999999942 24899
Q ss_pred EEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHHH
Q 009604 290 FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT 368 (531)
Q Consensus 290 V~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~ 368 (531)
|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .....+++|+++.|+||++++..+ .|++++++++++
T Consensus 138 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g--~G~l~~~~~~~~ 215 (392)
T 2z9v_A 138 VSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPG--LTMMGVSERAWA 215 (392)
T ss_dssp EEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSC--CEEEEECHHHHH
T ss_pred EEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCc--eeEEEECHHHHH
Confidence 99999999999999999999999999999999999875432 223345789999999997665432 388889998888
Q ss_pred HHHHHh--------------------hhcCCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCceEE
Q 009604 369 QIRNLH--------------------HVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPKVKRV 423 (531)
Q Consensus 369 ~l~~~~--------------------~~~G~~~s~~~a~l~l~~L~t-----l~~r~~~~~~na~~La~~L~~~p~v~~V 423 (531)
.++... .....+.+......+...++. +....++..++++.+.+.|++. ++. +
T Consensus 216 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~ 293 (392)
T 2z9v_A 216 KMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLS-V 293 (392)
T ss_dssp HHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-B
T ss_pred HhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCe-e
Confidence 776421 011122333332222223332 3344566667788888888775 432 1
Q ss_pred eCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-CcccccC
Q 009604 424 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFG 476 (531)
Q Consensus 424 ~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~-~iavS~G 476 (531)
..|. +. ...+++++|.++.+ ....++.+.|... ++.+..|
T Consensus 294 ~~~~----~~--------~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gi~v~~g 334 (392)
T 2z9v_A 294 WAAS----DS--------IASPTTTAVRTPDG-VDEKALRQAARARYGVVFSSG 334 (392)
T ss_dssp SSSS----GG--------GBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECEEC
T ss_pred ccCC----cc--------ccCCceEEEECCCC-CCHHHHHHHHHhcCCEEEecC
Confidence 1111 00 01467889988522 2344566666543 6666555
No 91
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.90 E-value=5.1e-23 Score=215.78 Aligned_cols=287 Identities=17% Similarity=0.187 Sum_probs=193.6
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------CCHHHHHHhccCCC
Q 009604 214 GAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ADMEGLEAALNNNN 286 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------~d~e~Le~al~~~~ 286 (531)
+.++++++++|++|+.+++.++ +++||+|+++.+.|.++... ++..|+++.+++. .|+++|++++++ +
T Consensus 77 ~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~ 151 (399)
T 2oga_A 77 ETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLA----VSATGATPVPVEPHEDHPTLDPLLVEKAITP-R 151 (399)
T ss_dssp TSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCSSSSSBCHHHHHHHCCT-T
T ss_pred CCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHH----HHHCCCEEEEEecCCCCCCcCHHHHHHhcCC-C
Confidence 5568999999999999999999 89999999999999986543 3456888887763 378999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccC--CcEEEECC--ccccccCCCceEEEEEe
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSA--TKFIGGHNDVLAGSISG 362 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g--aDivv~S~--sK~lgg~g~v~gG~iv~ 362 (531)
+++|+ |+||+|.+.|+++|.++|+++|++||+|++|+.+...+....+ .|+++.|+ +|+++++| .+|+++.
T Consensus 152 ~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~~~~G--~~g~~~~ 226 (399)
T 2oga_A 152 TRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFG--DGGAVVT 226 (399)
T ss_dssp EEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSSCCSS--CCEEEEE
T ss_pred CeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccCCcCC--ceEEEEe
Confidence 89888 5789999999999999999999999999999865332222334 69999999 69999866 3788877
Q ss_pred C-hHHHHHHHHHhhhc----------C--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 363 S-GKLVTQIRNLHHVL----------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 363 ~-~~li~~l~~~~~~~----------G--~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
+ +++++.++...... | ..+++..++++..+++.+....++..++++.+.+.|++.+++.. +..+
T Consensus 227 ~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~---~~~~ 303 (399)
T 2oga_A 227 GDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGL---PVTA 303 (399)
T ss_dssp SCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCTTCBC---CCCC
T ss_pred CCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc---cCCC
Confidence 5 78888776654321 1 24567777777778887777777777888888888887765431 2111
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCcccc----ccCCCHHHHHhcCCCC
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS----YWDLSQSERLKYGIMD 505 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s----~~~~~~~~~~~~gi~~ 505 (531)
+. +.+.++.|.+... ...++.+.|...++.++.+....+...|.... ....+..+. +.+
T Consensus 304 ~~-----------~~~~~~~~~~~~~--~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~ 366 (399)
T 2oga_A 304 PD-----------TDPVWHLFTVRTE--RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAES----FAR 366 (399)
T ss_dssp TT-----------EECCCSSEEEECS--SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHH----HHH
T ss_pred CC-----------CcceeEEEEEECC--CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHH----HHh
Confidence 10 0112223444321 23456666655566665432111100000000 000000000 013
Q ss_pred CeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 506 NLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 506 ~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
+.|||+++...+++.++.+.++|++
T Consensus 367 ~~lRi~~~~~~t~edi~~~~~~l~~ 391 (399)
T 2oga_A 367 QVLSLPIGPHLERPQALRVIDAVRE 391 (399)
T ss_dssp HEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CEEEccCCCCCCHHHHHHHHHHHHH
Confidence 6899999988777777777777653
No 92
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.90 E-value=1.4e-22 Score=213.02 Aligned_cols=253 Identities=11% Similarity=0.059 Sum_probs=179.0
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------CCHHHHHHhccCCCcEE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ADMEGLEAALNNNNVSL 289 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------~d~e~Le~al~~~~tkl 289 (531)
++++++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|.++..++. .|+++|++++++ ++++
T Consensus 110 ~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~ 184 (404)
T 2o1b_A 110 DEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGV----LLADGKPVPLNLEPPHYLPDWSKVDSQIID-KTKL 184 (404)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHH----HHTTCEEEEEECCTTTCCCCGGGSCHHHHH-HEEE
T ss_pred ccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHCCCEEEEeccCcccCcCCHHHHHHhhcc-CceE
Confidence 46778888889999999999999999999999999876444 345777766653 367888888876 4899
Q ss_pred EEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc----cccccc----CCcEEEECCccccccCCCceEE
Q 009604 290 FFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL----GADLVLHSATKFIGGHNDVLAG 358 (531)
Q Consensus 290 V~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~----~~~l~~----gaDivv~S~sK~lgg~g~v~gG 358 (531)
|++++|+||||.+++ +++|.++|+++|++||+|++|..... .....+ +.|+++.|+||.++..|. ..|
T Consensus 185 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G 263 (404)
T 2o1b_A 185 IYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF-RVG 263 (404)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGG-CCE
T ss_pred EEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchh-heE
Confidence 999999999999986 67899999999999999999875421 112222 457999999999985553 468
Q ss_pred EEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchh
Q 009604 359 SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 434 (531)
Q Consensus 359 ~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~ 434 (531)
++++++++++.++......+...++...+.+...++. +....++..++++.+.+.|+++ ++. +..|.
T Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~------- 334 (404)
T 2o1b_A 264 FAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLP-FVHAK------- 334 (404)
T ss_dssp EEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-EECCC-------
T ss_pred eEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCe-ecCCC-------
Confidence 8889999998888766555555566555555445543 3444555667788888888876 442 22111
Q ss_pred hhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec
Q 009604 435 HIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG 513 (531)
Q Consensus 435 ~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvG 513 (531)
.|.++++.++.+ ....++.+.|. ..++.+..|..+.. ..++.||||++
T Consensus 335 ---------~g~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~~iRis~~ 383 (404)
T 2o1b_A 335 ---------GGIYVWLETPPG-YDSEQFEQFLVQEKSILVAPGKPFGE---------------------NGNRYVRISLA 383 (404)
T ss_dssp ---------BSSEEEEECCTT-CCHHHHHHHHHHHHCEECEESGGGCG---------------------GGTTEEEEECC
T ss_pred ---------cceEEEEeCCCC-CCHHHHHHHHHHHCCEEEeCchhhCc---------------------CCCCeEEEEEc
Confidence 234688888632 12345555543 34666666643310 02578999999
Q ss_pred C
Q 009604 514 V 514 (531)
Q Consensus 514 l 514 (531)
.
T Consensus 384 ~ 384 (404)
T 2o1b_A 384 L 384 (404)
T ss_dssp S
T ss_pred C
Confidence 7
No 93
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.90 E-value=1.6e-22 Score=213.38 Aligned_cols=269 Identities=17% Similarity=0.133 Sum_probs=183.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhccCCC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al~~~~ 286 (531)
.+.++++++|++|+.+++.+++++||+|++..+.|.+....+ ...|.++..++. .|+++|++++++.+
T Consensus 119 ~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~ 194 (421)
T 3l8a_A 119 KEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTI----RLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNN 194 (421)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHH----HHTTEEEEEEECEEETTEEECCHHHHHHHHHHTT
T ss_pred HHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHH----HHCCCEEEeccccccCCCeeeCHHHHHHHhhccC
Confidence 467888888889999999999999999999999999866444 334667666653 38999999998325
Q ss_pred cEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccc-----cCCcEEEECCccccccCC
Q 009604 287 VSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS-----LGADLVLHSATKFIGGHN 353 (531)
Q Consensus 287 tklV~lesP~NPtG~v~---dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~-----~gaDivv~S~sK~lgg~g 353 (531)
+++|++++|+||+|.+. ++++|.++|+++|++||+||+|..... ..... .+.++++.|++|.++..|
T Consensus 195 ~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 274 (421)
T 3l8a_A 195 VKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAG 274 (421)
T ss_dssp EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGG
T ss_pred CeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCch
Confidence 99999999999999984 688999999999999999999864321 11111 245599999999998555
Q ss_pred CceEEEEEeC-hHHHHHHHHHhhhcCC-CchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCC
Q 009604 354 DVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPG 427 (531)
Q Consensus 354 ~v~gG~iv~~-~~li~~l~~~~~~~G~-~~s~~~a~l~l~~L~----tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pg 427 (531)
. ..|+++.+ +++.+.+.......+. ..++..+..+...++ .+..+.++..++.+.+.+.|+++|.+..+ .|.
T Consensus 275 ~-~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~-~~~ 352 (421)
T 3l8a_A 275 T-KNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVM-EPE 352 (421)
T ss_dssp G-CCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEE-CCS
T ss_pred h-heEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEe-CCC
Confidence 3 46777776 7888888765533332 445554444333333 34555666778888888999877766433 221
Q ss_pred CCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCC
Q 009604 428 LKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 506 (531)
Q Consensus 428 l~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~ 506 (531)
.+.+++++++.......++.+.| +..++.++.|..+.. ..++
T Consensus 353 ----------------~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~ 395 (421)
T 3l8a_A 353 ----------------GTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGK---------------------EGKY 395 (421)
T ss_dssp ----------------BSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCG---------------------GGTT
T ss_pred ----------------eeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCC---------------------CCCC
Confidence 22345577753111234556666 345777776654321 1258
Q ss_pred eEEEEecCCCHHHHHHHHHHHH
Q 009604 507 LVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 507 lIRlSvGlE~~edli~dL~~AL 528 (531)
.|||+++. +++.++...+.|
T Consensus 396 ~iRi~~~~--~~~~i~~~l~~l 415 (421)
T 3l8a_A 396 FARLNVAT--PKNTVQEALSRI 415 (421)
T ss_dssp EEEEECCS--CHHHHHHHHHHH
T ss_pred EEEEEecC--CHHHHHHHHHHH
Confidence 99999995 333344444433
No 94
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.90 E-value=1.6e-22 Score=207.51 Aligned_cols=261 Identities=10% Similarity=0.051 Sum_probs=187.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCcEEEEEe
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTE 293 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-~d~e~Le~al~~~~tklV~le 293 (531)
.++++++++|++|+.+++.++. ||+|+++.++|.+... .++..|+++..++. ++.+.+ ...++++|+++
T Consensus 67 ~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~----~~~~~~~v~i~ 136 (350)
T 3fkd_A 67 NNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYED----ACRMYEHEVCFYPSNEDIGEA----DFSNMDFCWLC 136 (350)
T ss_dssp GGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHH----HHHHTTCEEEEEETTSCGGGS----CCTTCSEEEEE
T ss_pred HHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHH----HHHHcCCeEEEEecCCccccC----ccCCCCEEEEe
Confidence 4578888888899999999887 9999999999988653 34556889988887 433332 21258999999
Q ss_pred CCCCCCCcccCHHHHHHHHHhcC-CEEEEeCCCCCCcccc------ccccCCcEEEECCccccccCCCceEEEEEeChHH
Q 009604 294 SPTNPFLRCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQK------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL 366 (531)
Q Consensus 294 sP~NPtG~v~dl~~I~~la~~~g-i~lIvD~a~a~~~~~~------~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~l 366 (531)
+|+||||.++++++|.++++.++ .+||+|++|....... ....+.++++.|+||.++.+|. ..|++++++++
T Consensus 137 ~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~ 215 (350)
T 3fkd_A 137 NPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGL-RIGYIVANKDF 215 (350)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGG-CCEEEECCHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcch-heEeEEeCHHH
Confidence 99999999999999999998875 7999999987533211 1123566999999999985553 36888889999
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCC
Q 009604 367 VTQIRNLHHVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTG 443 (531)
Q Consensus 367 i~~l~~~~~~~G~~~s~~~a~l~l~~L~tl---~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g 443 (531)
++.++.....+ ..++...+.+...++.. ..++++..++++.+.+.|+++|++.. +|.
T Consensus 216 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~---------------- 275 (350)
T 3fkd_A 216 MKRVAAFSTPW--AVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEV--HPS---------------- 275 (350)
T ss_dssp HHHHHTTCCTT--CSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEE--CCC----------------
T ss_pred HHHHHHhCCCC--CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE--CCC----------------
Confidence 98887655433 45566666555555543 34555666888899999998877642 232
Q ss_pred cccEEEEEEcCCHHHHHHHHHHcCC-CCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCC-HHHHH
Q 009604 444 FGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED-FEDLK 521 (531)
Q Consensus 444 ~g~ivsf~l~g~~~~~~~fl~~L~~-~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~-~edli 521 (531)
.++++++.++.. ...++.+.|.. .++.++.|..+. +..++.||||++.++ .++++
T Consensus 276 ~~~~~~~~~~~~--~~~~l~~~L~~~~gi~v~~g~~f~---------------------~~~~~~iRis~~~~~~~~~l~ 332 (350)
T 3fkd_A 276 GTTFFLLRLKKG--TAAELKKYMLEEYNMLIRDASNFR---------------------GLDESYVRITTQRPAQNQLFI 332 (350)
T ss_dssp SSSEEEEEESSS--CHHHHHHHHHHTTCEECEECTTST---------------------TCCTTEEEEECCCHHHHHHHH
T ss_pred CCcEEEEECCCC--CHHHHHHHHHHHCCEEEEeCccCC---------------------CCCCCEEEEEcCCHHHHHHHH
Confidence 366788899753 45677777765 788888775531 123689999999532 34566
Q ss_pred HHHHHHHH
Q 009604 522 ADVLQALH 529 (531)
Q Consensus 522 ~dL~~AL~ 529 (531)
+.|.+.++
T Consensus 333 ~al~~~~~ 340 (350)
T 3fkd_A 333 KALETFLE 340 (350)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66655543
No 95
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.90 E-value=1.3e-22 Score=212.07 Aligned_cols=272 Identities=15% Similarity=0.134 Sum_probs=184.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCHHHHHHhccCCCcEEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNNNNVSLF 290 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~d~e~Le~al~~~~tklV 290 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|.++..++. .|+++|++++++.++++|
T Consensus 91 ~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v 166 (397)
T 2zyj_A 91 PEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQA----FRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFL 166 (397)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTCCEEEEEEEETTEECHHHHHHHHHHCCCSCE
T ss_pred hhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEE
Confidence 35677777778999999999999999999999999886543 3446777766653 389999999875348888
Q ss_pred E-EeCCCCCCCcccCHH---HHHHHHHhcCCEEEEeCCCCCCcc-----cccccc------CCcEEEECCccccccCCCc
Q 009604 291 F-TESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN-----QKALSL------GADLVLHSATKFIGGHNDV 355 (531)
Q Consensus 291 ~-lesP~NPtG~v~dl~---~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~------gaDivv~S~sK~lgg~g~v 355 (531)
+ +++|+||||.+.+.+ +|.++|+++|++||+|++|..... .....+ +.++++.|+||+++ +| .
T Consensus 167 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G-~ 244 (397)
T 2zyj_A 167 YLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PG-L 244 (397)
T ss_dssp EECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GG-G
T ss_pred EECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-cc-c
Confidence 5 699999999999855 899999999999999999876432 111222 33489999999998 44 3
Q ss_pred eEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcC-C-CceEEeCCCC
Q 009604 356 LAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKILEAH-P-KVKRVHYPGL 428 (531)
Q Consensus 356 ~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~-----tl~~r~~~~~~na~~La~~L~~~-p-~v~~V~~pgl 428 (531)
..|++++++++++.++..........++...+.+...++ .+....++..++++.+.+.|+++ | ++. +..|.
T Consensus 245 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~-~~~~~- 322 (397)
T 2zyj_A 245 RVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVR-YTRPK- 322 (397)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSE-ECCCS-
T ss_pred eeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-EccCC-
Confidence 468999999988888765443322234544444444443 23444455567778888888763 5 343 22222
Q ss_pred CCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeE
Q 009604 429 KSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLV 508 (531)
Q Consensus 429 ~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lI 508 (531)
.|.+++++++.+ ....++.+.|...++.+..|..+.. .+..++.|
T Consensus 323 ---------------~g~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~f~~-------------------~~~~~~~i 367 (397)
T 2zyj_A 323 ---------------GGMFVWMELPKG-LSAEGLFRRALEENVAFVPGGPFFA-------------------NGGGENTL 367 (397)
T ss_dssp ---------------BSSEEEEECSTT-CCHHHHHHHHHHTTEEEEESGGGCT-------------------TSCCTTEE
T ss_pred ---------------ccEEEEEEcCCC-CCHHHHHHHHHHCCCEEechHHhcC-------------------CCCCCCeE
Confidence 366888988642 2345666666555777766643211 01135789
Q ss_pred EEEecCC---CHHHHHHHHHHHHH
Q 009604 509 RFSFGVE---DFEDLKADVLQALH 529 (531)
Q Consensus 509 RlSvGlE---~~edli~dL~~AL~ 529 (531)
|||++.. +.++.++.|.++++
T Consensus 368 Ris~~~~~~~~i~~~~~~l~~~l~ 391 (397)
T 2zyj_A 368 RLSYATLDREGIAEGVRRLGRALK 391 (397)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHH
Confidence 9999975 23444555555554
No 96
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.90 E-value=2.4e-22 Score=210.24 Aligned_cols=273 Identities=17% Similarity=0.209 Sum_probs=187.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCHHHHHHhcc----C-C
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALN----N-N 285 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~d~e~Le~al~----~-~ 285 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|+++..++. .|+++|+++++ + .
T Consensus 98 ~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~ 173 (407)
T 2zc0_A 98 PENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLA----FEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQ 173 (407)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTC
T ss_pred cceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH----HHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcccC
Confidence 45677777778999999999999999999999999886543 3456777777654 38999999987 5 2
Q ss_pred CcEEEE-EeCCCCCCCcccCHH---HHHHHHHhcCCEEEEeCCCCCCcc-----cccccc---CCcEEEECCccccccCC
Q 009604 286 NVSLFF-TESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN-----QKALSL---GADLVLHSATKFIGGHN 353 (531)
Q Consensus 286 ~tklV~-lesP~NPtG~v~dl~---~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~---gaDivv~S~sK~lgg~g 353 (531)
++++|+ +++|+||||.+.|++ +|.++|+++|++||+|++|+.... .....+ +.++++.|+||.++ .|
T Consensus 174 ~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G 252 (407)
T 2zc0_A 174 KVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TG 252 (407)
T ss_dssp CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TT
T ss_pred CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CC
Confidence 489874 789999999999876 999999999999999999875422 111122 45689999999999 44
Q ss_pred CceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHcC-CCceEEeC
Q 009604 354 DVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTALRMAKILEAH-PKVKRVHY 425 (531)
Q Consensus 354 ~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t-------l~~r~~~~~~na~~La~~L~~~-p~v~~V~~ 425 (531)
..+|++++++++++.++......+...++.....+...++. +....++..++++.+.+.|+++ |++. +..
T Consensus 253 -~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~ 330 (407)
T 2zc0_A 253 -FRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAE-FTK 330 (407)
T ss_dssp -SCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSC-BCC
T ss_pred -cceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCE-Eec
Confidence 34789999999888887765544433455544444444432 2233444556777888888763 4432 112
Q ss_pred CCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-CcccccCCcccccccCccccccCCCHHHHHhcCCC
Q 009604 426 PGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 504 (531)
Q Consensus 426 pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~-~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~ 504 (531)
|. .|.+++|.++.+ ....++.+.|... ++.+..|..+.. + +..
T Consensus 331 ~~----------------~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~~~~---~----------------~~~ 374 (407)
T 2zc0_A 331 PI----------------AGMFVMFFLPEG-ADGISFANELMEREGVVVVPGKPFYT---D----------------ESG 374 (407)
T ss_dssp CS----------------BSSEEEEECSTT-CCHHHHHHHHHHHTCEECBCSGGGCS---S----------------SCC
T ss_pred CC----------------CcEEEEEEcCCC-CCHHHHHHHHHHhCCeEEECchhccC---C----------------CCC
Confidence 21 356888988642 2345566666544 667766643311 0 012
Q ss_pred CCeEEEEecCC---CHHHHHHHHHHHHHh
Q 009604 505 DNLVRFSFGVE---DFEDLKADVLQALHA 530 (531)
Q Consensus 505 ~~lIRlSvGlE---~~edli~dL~~AL~~ 530 (531)
++.+|||++.. +.+..++.|.+++++
T Consensus 375 ~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 375 KNAIRLNFSRPSKEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp TTEEEEECSSSCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999963 456667777776653
No 97
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.90 E-value=3.1e-22 Score=206.80 Aligned_cols=272 Identities=15% Similarity=0.160 Sum_probs=182.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhc---cCCCEEEEcCC-CccchHHHHHhhcccCCcEEEEeCC------CCHHHHHHhccC
Q 009604 215 AESTVIMASGMSASTVMLLALV---PAGGHIVTTTD-CYRKTRIFIETVLPKMGITATVIDP------ADMEGLEAALNN 284 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all---~pGD~VIv~~~-~y~~t~~~~~~~l~~~Gi~v~~vd~------~d~e~Le~al~~ 284 (531)
.++++++++|++|+.+++.++. ++||+|++..+ .|+... ...++..|+++..++. .|+++|++++++
T Consensus 59 ~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 135 (385)
T 2bkw_A 59 SQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ 135 (385)
T ss_dssp CEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred CceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc
Confidence 3578888889999999999998 89999988744 444432 1334556888888876 489999999976
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHhc--CCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEE
Q 009604 285 NNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSIS 361 (531)
Q Consensus 285 ~~tklV~lesP~NPtG~v~dl~~I~~la~~~--gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv 361 (531)
.++++|++++|+||||.+.|+++|.++|+++ |++||+|++++.+.. .....+++|+++.|+||+++++.+ .|+++
T Consensus 136 ~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G--~G~~~ 213 (385)
T 2bkw_A 136 NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAG--LSISL 213 (385)
T ss_dssp SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSC--EEEEE
T ss_pred CCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCc--ceEEE
Confidence 3489999999999999999999999999999 999999999875432 223345789999999997765432 38888
Q ss_pred eChHHHH-HHH------------------HHh--hhcC-----CCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 009604 362 GSGKLVT-QIR------------------NLH--HVLG-----GALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRM 410 (531)
Q Consensus 362 ~~~~li~-~l~------------------~~~--~~~G-----~~~s~~~a~l~l~~L~t-----l~~r~~~~~~na~~L 410 (531)
+++++++ .++ ... ...+ .+.+....+.+...++. +....++..++++.+
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 293 (385)
T 2bkw_A 214 CSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWF 293 (385)
T ss_dssp ECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 8887766 431 110 1111 23444433333333333 334456667888888
Q ss_pred HHHH-HcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCcccc
Q 009604 411 AKIL-EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS 489 (531)
Q Consensus 411 a~~L-~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s 489 (531)
.+.| ++. ++. +..|. +.. ...+++++|.+++ ..++.+.|...++.++.|..+
T Consensus 294 ~~~L~~~~-g~~-~~~~~----~~~-------~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g~~~---------- 346 (385)
T 2bkw_A 294 KDSLVNGL-QLT-SVSRY----PSN-------MSAHGLTAVYVAD----PPDVIAFLKSHGVVIAGGIHK---------- 346 (385)
T ss_dssp HHHHHTTT-CCE-ESSCS----SST-------TBCSSCEEEECSC----HHHHHHHHHHTTEECBCCCCT----------
T ss_pred HHHHHHhc-Cce-ecccC----ccc-------ccCCceEEEecCC----HHHHHHHHHHCCeEEeCCCCc----------
Confidence 8888 765 442 22111 000 0146788999864 455666665557666655321
Q ss_pred ccCCCHHHHHhcCCCCCeEEEE-ecC-------CCHHHHHHHHHHHHHh
Q 009604 490 YWDLSQSERLKYGIMDNLVRFS-FGV-------EDFEDLKADVLQALHA 530 (531)
Q Consensus 490 ~~~~~~~~~~~~gi~~~lIRlS-vGl-------E~~edli~dL~~AL~~ 530 (531)
...++.+||| +|. |+.+.+++.|.+++++
T Consensus 347 ------------~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 347 ------------DIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp ------------TTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred ------------ccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 0124689999 872 3455666666665543
No 98
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.90 E-value=7.1e-23 Score=210.47 Aligned_cols=240 Identities=15% Similarity=0.134 Sum_probs=170.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCC--EEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCHHHHHHhccCCCc
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGG--HIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNNNNV 287 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD--~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~d~e~Le~al~~~~t 287 (531)
|.+..+++++|++|+.+++.+++.+|| .|+++.+.|...+... ......|+++..++. .|+++|+++. + +
T Consensus 61 ~~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~d~~~l~~~~--~-~ 136 (357)
T 3lws_A 61 GMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQD-GLKELHPIETILVGAADRLMTLDEIKALP--D-I 136 (357)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHSSCEEEECSCTTSCCCHHHHHTCC--S-C
T ss_pred CCCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccc-hhhhccCcEEEEecCCCCCcCHHHHhcCc--C-c
Confidence 445678899999999999999999998 6777766655433210 012234788877764 3789999873 3 8
Q ss_pred EEEEEeCCCCCC-CcccC---HHHHHHHHHhcCCEEEEeCCCCC------CccccccccCCcEEEECCccccccCCCceE
Q 009604 288 SLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGADLVLHSATKFIGGHNDVLA 357 (531)
Q Consensus 288 klV~lesP~NPt-G~v~d---l~~I~~la~~~gi~lIvD~a~a~------~~~~~~l~~gaDivv~S~sK~lgg~g~v~g 357 (531)
++|++++|+||+ |.+.+ +++|.++|++||++||+|++|.. +.....+..+.|+++.|+||++++.. +
T Consensus 137 ~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---g 213 (357)
T 3lws_A 137 ACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIA---G 213 (357)
T ss_dssp SEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSS---C
T ss_pred ceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCc---e
Confidence 999999999998 98885 88999999999999999999751 11112222457899999999996654 5
Q ss_pred EEEEeChHHHHHHHHHhhhcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhh
Q 009604 358 GSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHH 435 (531)
Q Consensus 358 G~iv~~~~li~~l~~~~~~~G~~~--s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~ 435 (531)
|++++++++++.++..+..++... ....+..+..+++....++++..++++.+.+.|+++|++.....|.
T Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-------- 285 (357)
T 3lws_A 214 AILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVP-------- 285 (357)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEEEESSSC--------
T ss_pred EEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccCCC--------
Confidence 899999999998887665555332 2222333345566665666777788899999999888774323332
Q ss_pred hhhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCCcccccC
Q 009604 436 IATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFG 476 (531)
Q Consensus 436 l~~~~~~g~g~ivsf~l~g~~-~~~~~fl~~L~~~~iavS~G 476 (531)
.++++++.+++.. .....+.+.|...++.+..|
T Consensus 286 --------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g 319 (357)
T 3lws_A 286 --------VSNMFHLHFDGQAADISPKLEQVQEETGLGFVGY 319 (357)
T ss_dssp --------SSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSC
T ss_pred --------cceEEEEEecCChHHHHHHHHHHHHhcCeEEecc
Confidence 3578899987542 23566677776667776665
No 99
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.90 E-value=8.1e-23 Score=215.98 Aligned_cols=272 Identities=13% Similarity=0.114 Sum_probs=183.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCHHHHHHhccC------
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNN------ 284 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~d~e~Le~al~~------ 284 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|+++..++. .|+++|++++++
T Consensus 109 ~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~ 184 (425)
T 1vp4_A 109 EDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAF----RQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGK 184 (425)
T ss_dssp GGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTC
T ss_pred cccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHH----HHcCCEEEEeccCCCCCCHHHHHHHHHhhhhccc
Confidence 356777777789999999999999999999999998865433 446777776653 389999998865
Q ss_pred -CCcEEEE-EeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccc--c-ccCCcEEEECCcccccc
Q 009604 285 -NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKA--L-SLGADLVLHSATKFIGG 351 (531)
Q Consensus 285 -~~tklV~-lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~--l-~~gaDivv~S~sK~lgg 351 (531)
.++++|+ +++|+||||.+++ +++|.++|+++|++||+|++|..... ... + ..+.++++.|+||.++
T Consensus 185 ~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~- 263 (425)
T 1vp4_A 185 IKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA- 263 (425)
T ss_dssp GGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-
T ss_pred CCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-
Confidence 1489985 7899999999987 56888999999999999999875421 111 1 1256799999999998
Q ss_pred CCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcC-C---Cce
Q 009604 352 HNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAH-P---KVK 421 (531)
Q Consensus 352 ~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~-p---~v~ 421 (531)
.| ...|++++++++++.++......+...++...+.+...++. +....++..++++.+.+.|+++ | ++.
T Consensus 264 ~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~ 342 (425)
T 1vp4_A 264 PG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVK 342 (425)
T ss_dssp GG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCE
T ss_pred cc-cceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 54 45789999999988887655443333455555555555543 2333445557778888888764 4 232
Q ss_pred EEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhc
Q 009604 422 RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 501 (531)
Q Consensus 422 ~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~ 501 (531)
+..|. .|.++++.++.+ .+..++.+.|...++.+..|..+.. .
T Consensus 343 -~~~~~----------------~g~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~g~~f~~-------------------~ 385 (425)
T 1vp4_A 343 -WVKSE----------------GGLFIWLTLPEG-FDTWEMFEYAKRKKVFYVPGRVFKV-------------------Y 385 (425)
T ss_dssp -ECCCS----------------BSSEEEEECCTT-CCTTTTHHHHHHHTEECEEGGGGCT-------------------T
T ss_pred -EecCC----------------ccEEEEEEcCCC-CCHHHHHHHHHHCCCEEECchhhcC-------------------C
Confidence 22221 366889988632 1123444444333666665543211 0
Q ss_pred CCCCCeEEEEecCC---CHHHHHHHHHHHHH
Q 009604 502 GIMDNLVRFSFGVE---DFEDLKADVLQALH 529 (531)
Q Consensus 502 gi~~~lIRlSvGlE---~~edli~dL~~AL~ 529 (531)
+..++.||||++.. +.+..++.|.++++
T Consensus 386 ~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~ 416 (425)
T 1vp4_A 386 DEPSPSMRLSFCLPPDEKIVEGIKRLREVVL 416 (425)
T ss_dssp CCCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 11257899999974 33445555555554
No 100
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.90 E-value=2.6e-22 Score=212.02 Aligned_cols=262 Identities=12% Similarity=0.066 Sum_probs=184.0
Q ss_pred EEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhccc-CCcEEEEeCC------CCHHHHHHhccCC--CcE
Q 009604 218 TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK-MGITATVIDP------ADMEGLEAALNNN--NVS 288 (531)
Q Consensus 218 ~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~-~Gi~v~~vd~------~d~e~Le~al~~~--~tk 288 (531)
++++++|++|+.+++.+++++||+|+++.+.|.+... .+.. .|+++..++. .|+++|++++++. +++
T Consensus 116 i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 191 (430)
T 2x5f_A 116 PIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL----VFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKV 191 (430)
T ss_dssp CEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH----HHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEE
T ss_pred EEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH----HHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCE
Confidence 7777777899999999999999999999999998653 3445 6888877753 3689999998751 489
Q ss_pred EEEEeCCCCCCCcccC---HHHHHHHHHh-----cCCEEEEeCCCCCCccc-----c---cc-c-cCC---cEEEECCcc
Q 009604 289 LFFTESPTNPFLRCVD---VKLVSDLCHK-----KGAIVCIDGTFATPLNQ-----K---AL-S-LGA---DLVLHSATK 347 (531)
Q Consensus 289 lV~lesP~NPtG~v~d---l~~I~~la~~-----~gi~lIvD~a~a~~~~~-----~---~l-~-~ga---Divv~S~sK 347 (531)
+|++++|+||||.+++ +++|.++|++ +|+++|+|++|...... . .+ . .+. ++++.|+||
T Consensus 192 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 271 (430)
T 2x5f_A 192 IMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATK 271 (430)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHH
T ss_pred EEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEeccc
Confidence 9999999999999998 8899999999 99999999998753211 1 11 2 345 688999999
Q ss_pred ccccCCCceEEEEEe---ChHHHHHHHHHhhh----cCCCchHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHH
Q 009604 348 FIGGHNDVLAGSISG---SGKLVTQIRNLHHV----LGGALNPNAAYLIIRGMK----TLHL---RVQQQNSTALRMAKI 413 (531)
Q Consensus 348 ~lgg~g~v~gG~iv~---~~~li~~l~~~~~~----~G~~~s~~~a~l~l~~L~----tl~~---r~~~~~~na~~La~~ 413 (531)
.++.+|.+ .|++++ ++++++.+...... .....++...+.+...++ .+.. ..++..++++.+.+.
T Consensus 272 ~~~~~G~r-iG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (430)
T 2x5f_A 272 EFFAWGFR-VGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEV 350 (430)
T ss_dssp HTTCGGGC-CEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCC-eEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99866643 578888 88888888765543 333456665555555555 2222 455566777788888
Q ss_pred HHcC--C-CceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CCcccccCCcccccccCcccc
Q 009604 414 LEAH--P-KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMS 489 (531)
Q Consensus 414 L~~~--p-~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~-~~iavS~Gg~~Sli~~p~~~s 489 (531)
|+++ + ++. + ++. ..|.++++.+++ .+..+|.+.|.. .++.+..|
T Consensus 351 L~~~~~~~g~~-~-~~~---------------~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g------------- 398 (430)
T 2x5f_A 351 VYADQYHSHWQ-A-YDF---------------NSGYFMAIKVHD--VDPEALRKHLIDKYSIGVIAL------------- 398 (430)
T ss_dssp HTCGGGTTTEE-E-CCC---------------CBSSEEEEEESS--SCHHHHHHHHHHHHCEECEEC-------------
T ss_pred HHhhCCCCCce-e-eCC---------------CceEEEEeCCCC--CCHHHHHHHHHHhCCEEEecC-------------
Confidence 8732 1 232 2 111 124468888872 234456666644 45555443
Q ss_pred ccCCCHHHHHhcCCCCCeEEEEec---CCCHHHHHHHHHHHHHh
Q 009604 490 YWDLSQSERLKYGIMDNLVRFSFG---VEDFEDLKADVLQALHA 530 (531)
Q Consensus 490 ~~~~~~~~~~~~gi~~~lIRlSvG---lE~~edli~dL~~AL~~ 530 (531)
.++.+|||++ .|+.++.++.|.+++++
T Consensus 399 --------------~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 399 --------------NATDIRIAFSCVEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp --------------SSSEEEEEGGGSCGGGHHHHHHHHHHHHHH
T ss_pred --------------CCCeEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 1468999999 34566777777777654
No 101
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.90 E-value=8.9e-23 Score=211.22 Aligned_cols=271 Identities=15% Similarity=0.180 Sum_probs=184.3
Q ss_pred cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEEE
Q 009604 217 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFF 291 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV~ 291 (531)
.++++++|++|+.+++.+++++||+|+++.+.|.+.. +...+...|.++..++. .|+++|++++++.++++|+
T Consensus 76 ~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~ 153 (393)
T 3kgw_A 76 TLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLF 153 (393)
T ss_dssp EEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEE
T ss_pred EEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEE
Confidence 4677788889999999999999999999987775432 22445566888877763 4899999999862489999
Q ss_pred EeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCc-cccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHH
Q 009604 292 TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI 370 (531)
Q Consensus 292 lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~-~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l 370 (531)
+++|+||||.+.|+++|.++|+++|++||+|++++.+. .......++|+++.|+||++++..+ .|++++++++++.+
T Consensus 154 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g--~g~~~~~~~~~~~~ 231 (393)
T 3kgw_A 154 LVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPG--ISLISFNDKAKYKV 231 (393)
T ss_dssp EESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSS--CEEEEECHHHHHHH
T ss_pred EeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCc--eeEEEECHHHHHHH
Confidence 99999999999999999999999999999999987432 2333446789999999998754433 58888999988887
Q ss_pred HHHhh--------------hc---------CCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCceE
Q 009604 371 RNLHH--------------VL---------GGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPKVKR 422 (531)
Q Consensus 371 ~~~~~--------------~~---------G~~~s~~~a~l~l~~L~t-----l~~r~~~~~~na~~La~~L~~~p~v~~ 422 (531)
..... .+ ..+.+....+.+...++. +....++..++++.+.+.|++. ++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~- 309 (393)
T 3kgw_A 232 YSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLK- 309 (393)
T ss_dssp HTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-
T ss_pred hccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCe-
Confidence 64221 11 123333333333333332 3555667778888899999876 332
Q ss_pred EeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-CcccccCCcccccccCccccccCCCHHHHHhc
Q 009604 423 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 501 (531)
Q Consensus 423 V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~-~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~ 501 (531)
+..|. +. ...+.+++|.++.+ ....++.+.|... ++.+..|...
T Consensus 310 ~~~~~----~~--------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~---------------------- 354 (393)
T 3kgw_A 310 FFVKD----PE--------IRLPTITTVTVPAG-YNWRDIVSYVLDHFSIEISGGLGP---------------------- 354 (393)
T ss_dssp BSSSS----GG--------GBCSSEEEEECCTT-BCHHHHHHHHHHHHCEECBCCCGG----------------------
T ss_pred eccCC----hh--------hcCCeEEEEeCCCC-CCHHHHHHHHHHhCCEEEeCCccc----------------------
Confidence 11111 00 11356788888532 2344566665433 6666655311
Q ss_pred CCCCCeEEEEe-cCC----CHHHHHHHHHHHHH
Q 009604 502 GIMDNLVRFSF-GVE----DFEDLKADVLQALH 529 (531)
Q Consensus 502 gi~~~lIRlSv-GlE----~~edli~dL~~AL~ 529 (531)
..++.|||++ |.. +.+++++.|.++++
T Consensus 355 -~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~ 386 (393)
T 3kgw_A 355 -TEERVLRIGLLGYNATTENVDRVAEALREALQ 386 (393)
T ss_dssp -GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 1257899998 764 34555666666554
No 102
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.90 E-value=8.9e-23 Score=208.89 Aligned_cols=271 Identities=16% Similarity=0.124 Sum_probs=183.7
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcC-CCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCC-CcE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNN-NVS 288 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~-~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~-~tk 288 (531)
++++++++|++|+.+++.+++++||+|++.. +.|+..+ ...+...|+++..++. .|+++|+++++++ +++
T Consensus 57 ~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 133 (366)
T 1m32_A 57 TSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTIS 133 (366)
T ss_dssp EEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCC
T ss_pred cEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeE
Confidence 4688999999999999999999999987765 4454433 2233445777776653 4899999999753 489
Q ss_pred EEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHH
Q 009604 289 LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV 367 (531)
Q Consensus 289 lV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li 367 (531)
+|++++|+||||.+.|+++|.++|+++|++||+|++++.+.. ......++|+++.|+||+++++.+ .|+++++++++
T Consensus 134 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g--~G~~~~~~~~~ 211 (366)
T 1m32_A 134 HIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPG--FAFVIAREQKL 211 (366)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSS--EEEEEEEHHHH
T ss_pred EEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCc--eEEEEECHHHH
Confidence 999999999999999999999999999999999999875432 222235789999999998755432 48999988877
Q ss_pred HHHHHHh---------------hhcC---CCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCceEE
Q 009604 368 TQIRNLH---------------HVLG---GALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAHPKVKRV 423 (531)
Q Consensus 368 ~~l~~~~---------------~~~G---~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~p~v~~V 423 (531)
+.++... ...+ .+.+....+.+...++. +....++..++++.+.+.|++. ++. +
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~-~ 289 (366)
T 1m32_A 212 AACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFN-T 289 (366)
T ss_dssp TTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCC-B
T ss_pred HhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCe-e
Confidence 6543210 0001 23444443333334433 2345566677888888888876 332 1
Q ss_pred eCCCCCCCchhhhhhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcC
Q 009604 424 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 502 (531)
Q Consensus 424 ~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~-~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~g 502 (531)
..|. . ...+.+++|.++.. .....++.+.|...++.+..|..+
T Consensus 290 ~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~----------------------- 333 (366)
T 1m32_A 290 LLDD-----E--------LHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS----------------------- 333 (366)
T ss_dssp SSCG-----G--------GBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCS-----------------------
T ss_pred ccCc-----h--------hcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCC-----------------------
Confidence 1110 0 01355899998630 123456666665556666555321
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 503 IMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 503 i~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.++.|||+++..++++.++.+.++|++
T Consensus 334 -~~~~iRi~~~~~~~~~~i~~~~~~l~~ 360 (366)
T 1m32_A 334 -QSDCFRIGNIGEVYAADITALLTAIRT 360 (366)
T ss_dssp -SSCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 147899999988777777777777653
No 103
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.90 E-value=4.5e-22 Score=207.33 Aligned_cols=267 Identities=16% Similarity=0.158 Sum_probs=185.4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccC----------CCEEEEcCCCccchHHHHHhhccc---------CCcEEEEeCCCC
Q 009604 214 GAESTVIMASGMSASTVMLLALVPA----------GGHIVTTTDCYRKTRIFIETVLPK---------MGITATVIDPAD 274 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~p----------GD~VIv~~~~y~~t~~~~~~~l~~---------~Gi~v~~vd~~d 274 (531)
|.+++++++||++|+.+++..+..+ ||+|++..+.|++........... ....+..++..|
T Consensus 92 g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (392)
T 3ruy_A 92 NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGD 171 (392)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTC
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCccc
Confidence 7889999999999999999877654 689999999997754333222111 112355667779
Q ss_pred HHHHHHhccCCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCC------ccccccccCCcEEEEC
Q 009604 275 MEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGADLVLHS 344 (531)
Q Consensus 275 ~e~Le~al~~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~------~~~~~l~~gaDivv~S 344 (531)
+++|++++++ ++++|++++|+||+|.+.| +++|.++|+++|++||+|++|... ..........|+++
T Consensus 172 ~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~-- 248 (392)
T 3ruy_A 172 LEALKAAITP-NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYI-- 248 (392)
T ss_dssp HHHHHHHCCT-TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--
T ss_pred HHHHHHHhcc-CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEE--
Confidence 9999999986 5999999999999999998 999999999999999999998532 11222234568775
Q ss_pred CccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCCceE
Q 009604 345 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEAHPKVKR 422 (531)
Q Consensus 345 ~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~La~~L~~~p~v~~ 422 (531)
++|.++| |...+|++++++++++.+...........++..++.+...++.+. ...++..++++.+.+.|++...
T Consensus 249 ~SK~l~g-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~--- 324 (392)
T 3ruy_A 249 LGKALGG-GVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDN--- 324 (392)
T ss_dssp ECGGGGT-TTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCC---
T ss_pred EchhhhC-ChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC---
Confidence 5699887 323478999998887776554433344556666666666666553 3345566777777777776421
Q ss_pred EeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcC
Q 009604 423 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 502 (531)
Q Consensus 423 V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~g 502 (531)
|.+. ...+.|+++.+.+++ ...++.+.|...++.++.|+
T Consensus 325 ---~~~~----------~~~~~g~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~------------------------- 363 (392)
T 3ruy_A 325 ---PMIT----------EVRGKGLFIGIELNE---PARPYCEQLKAAGLLCKETH------------------------- 363 (392)
T ss_dssp ---TTEE----------EEEEETTEEEEEESS---CSHHHHHHHHTTTEECCCBT-------------------------
T ss_pred ---CCce----------EEEeeeeEEEEEEcc---hHHHHHHHHHHCCcEEecCC-------------------------
Confidence 1110 011247789998864 34566777766565555331
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 503 IMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 503 i~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
++.|||++++..+++.++.+.++|++
T Consensus 364 --~~~iRi~~~~~~~~~~i~~~~~~l~~ 389 (392)
T 3ruy_A 364 --ENVIRIAPPLVISEEDLEWAFQKIKA 389 (392)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899998887777777777666653
No 104
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.90 E-value=1.1e-22 Score=210.35 Aligned_cols=263 Identities=14% Similarity=0.054 Sum_probs=179.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhccC--CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHH----HHHHhccCCCcE
Q 009604 215 AESTVIMASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME----GLEAALNNNNVS 288 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~p--GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e----~Le~al~~~~tk 288 (531)
.++++++++|++++.+++.+++++ ||+|+++.++|.+.... ++..|.++..++.++.+ +|++++++ +++
T Consensus 82 ~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 156 (376)
T 3ezs_A 82 ENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGA----AKFIKAKSLLMPLTKENDFTPSLNEKELQ-EVD 156 (376)
T ss_dssp GGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHH----HHHTTCEEEEEECCGGGTSCCCCCHHHHH-HCS
T ss_pred HHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHH----HHHcCCEEEEcccCCCCCcchhHHhhhcc-CCC
Confidence 467888999999999999999999 99999999999886543 44568888877654221 56666665 489
Q ss_pred EEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc----cccc---------ccCCcEEEECCccccccC
Q 009604 289 LFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL---------SLGADLVLHSATKFIGGH 352 (531)
Q Consensus 289 lV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~----~~~l---------~~gaDivv~S~sK~lgg~ 352 (531)
+|++++|+||||.+++ +++|+++|+++|++||+|++|..... .... ..+.++++.|+||.+|..
T Consensus 157 ~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 157 LVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc
Confidence 9999999999999987 56777779999999999999875322 1111 356789999999999755
Q ss_pred CCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 353 NDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 353 g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t---l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
|. ..|++++++++++.+.......+...++...+.+...++. +....++..++.+.+.+.|+ .+ ..|
T Consensus 237 G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~---~~~--- 306 (376)
T 3ezs_A 237 GL-RSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---NT---LIY--- 306 (376)
T ss_dssp GG-CCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---TC---CCC---
T ss_pred cc-eeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---CC---CCC---
Confidence 53 4688889999999888776655556666665555555543 33444444555566665554 11 111
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeE
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLV 508 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~-~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lI 508 (531)
..|.++++.++ + ...+.+.|.. .++.+..|..+..- +..++.|
T Consensus 307 -------------~~~~~~~~~~~-~---~~~~~~~l~~~~gi~v~~g~~~~~~-------------------~~~~~~i 350 (376)
T 3ezs_A 307 -------------PYSFYVYLPVQ-N---GENFAKTLYQNEGIITLPALYLGRN-------------------RIGADYV 350 (376)
T ss_dssp -------------SBSSEEEEECS-C---HHHHHHHHHHHHCCBCEEGGGGCST-------------------TTTTTEE
T ss_pred -------------CcceEEEEECC-C---HHHHHHHHHHhCCEEEeCcHHhCCC-------------------CCCCCeE
Confidence 14678888886 2 3445555543 46666666543210 1236899
Q ss_pred EEEecC--CCHHHHHHHHHHHH
Q 009604 509 RFSFGV--EDFEDLKADVLQAL 528 (531)
Q Consensus 509 RlSvGl--E~~edli~dL~~AL 528 (531)
|||++. |+.+..++.|.+++
T Consensus 351 Ris~~~~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 351 RLALVYDTPLLEKPLEIIETYR 372 (376)
T ss_dssp EEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHH
Confidence 999986 12233344444444
No 105
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.90 E-value=3.2e-22 Score=210.14 Aligned_cols=277 Identities=15% Similarity=0.136 Sum_probs=181.9
Q ss_pred cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhccCCCcE
Q 009604 217 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNNNNVS 288 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al~~~~tk 288 (531)
+++++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|+++..++. .|+++|++++++ +++
T Consensus 88 ~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-~~~ 162 (411)
T 2o0r_A 88 EVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVV----AMAGAHRVTVPLVPDGRGFALDADALRRAVTP-RTR 162 (411)
T ss_dssp SEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEEETTEEECCHHHHHHHCCT-TEE
T ss_pred eEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHH----HHcCCEEEEeeccccccCCCCCHHHHHHhhcc-Cce
Confidence 6888888889999999999999999999999999865433 445777766653 489999999987 499
Q ss_pred EEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccc----cCCcEEEECCccccccCCCce
Q 009604 289 LFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS----LGADLVLHSATKFIGGHNDVL 356 (531)
Q Consensus 289 lV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~----~gaDivv~S~sK~lgg~g~v~ 356 (531)
+|++++|+||+|.+.+ +++|.++|+++|++||+|++|..... ..... .+.|+++.|++|.++.+|. .
T Consensus 163 ~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r 241 (411)
T 2o0r_A 163 ALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGW-K 241 (411)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTT-C
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccc-e
Confidence 9999999999999987 48999999999999999999875321 11111 4679999999999986663 4
Q ss_pred EEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCc
Q 009604 357 AGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHP 432 (531)
Q Consensus 357 gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~----tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p 432 (531)
+|++++++++++.+.......+...++.....+...++ .+....++..++++.+.+.|+++ ++. +..|.
T Consensus 242 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----- 314 (411)
T 2o0r_A 242 IGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI-GFA-VHDSY----- 314 (411)
T ss_dssp EEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-TCE-ECCCC-----
T ss_pred EEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCE-ecCCC-----
Confidence 78999999988888765543332223222222223333 23444455667777888888765 332 21111
Q ss_pred hhhhhhhhcCCcccEEEEEEcCC-HHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEE
Q 009604 433 EHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRF 510 (531)
Q Consensus 433 ~~~l~~~~~~g~g~ivsf~l~g~-~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRl 510 (531)
.|.++++.++.. .....++.+.|. ..++.+..|..+.-. ....+|. . ....++.|||
T Consensus 315 -----------~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~~~~------~--~~~~~~~iRi 373 (411)
T 2o0r_A 315 -----------GTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDP--AAGQASQ------Q--ADVWNHLVRF 373 (411)
T ss_dssp -----------BSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCC--C----------------CCGGGCEEE
T ss_pred -----------eeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCC--ccccccc------c--ccCCCCeEEE
Confidence 245788888631 012345555542 346666666443110 0000010 0 0112468999
Q ss_pred EecCCCHHHHHHHHHHHHH
Q 009604 511 SFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 511 SvGlE~~edli~dL~~AL~ 529 (531)
|++. +++.++.+.++|+
T Consensus 374 s~~~--~~e~i~~~~~~l~ 390 (411)
T 2o0r_A 374 TFCK--RDDTLDEAIRRLS 390 (411)
T ss_dssp ECCS--CHHHHHHHHHHHG
T ss_pred EecC--CHHHHHHHHHHHH
Confidence 9986 3445555555554
No 106
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.90 E-value=1.5e-22 Score=210.22 Aligned_cols=270 Identities=14% Similarity=0.151 Sum_probs=180.2
Q ss_pred cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEEE
Q 009604 217 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFF 291 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV~ 291 (531)
.++++++|++|+.+++.+++++||+|+++.+.|.+.. +...++..|+++.+++. .|+++|++++++.++++|+
T Consensus 72 ~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~ 149 (393)
T 2huf_A 72 TFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR--SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLF 149 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEE
T ss_pred EEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEE
Confidence 4667788889999999999999999999999998742 22344556888888763 5899999999761389999
Q ss_pred EeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHH
Q 009604 292 TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI 370 (531)
Q Consensus 292 lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l 370 (531)
+++|+||||.+.|+++|.++|+++|++||+|+++..+.. .....+++|+++.|+||+++|..+ .|++++++++++.+
T Consensus 150 ~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G--~G~~~~~~~~~~~~ 227 (393)
T 2huf_A 150 LTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPG--ITPVSFSHRAVERY 227 (393)
T ss_dssp EESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSS--CEEEEECHHHHHHH
T ss_pred EEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCC--eEEEEECHHHHHHH
Confidence 999999999999999999999999999999999764422 222245789999999998654333 28888899888887
Q ss_pred HHHh----h-h---------cC---------CCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCceE
Q 009604 371 RNLH----H-V---------LG---------GALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPKVKR 422 (531)
Q Consensus 371 ~~~~----~-~---------~G---------~~~s~~~a~l~l~~L~t-----l~~r~~~~~~na~~La~~L~~~p~v~~ 422 (531)
+... . . ++ ++.+......+...++. +....++..++++.+.+.|++. ++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~- 305 (393)
T 2huf_A 228 KRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFE- 305 (393)
T ss_dssp HTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-
T ss_pred hhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCe-
Confidence 6431 0 0 11 12233322222223332 3445666778888888888876 432
Q ss_pred EeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhc
Q 009604 423 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 501 (531)
Q Consensus 423 V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~ 501 (531)
+..|. . ...+++++|.++.+ ....++.+.|. ..++.+..|..+
T Consensus 306 ~~~~~-----~--------~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~g~~~---------------------- 349 (393)
T 2huf_A 306 LYADP-----K--------DRLSTVTTIKVPQG-VDWLKAAQYAMKTYLVEISGGLGP---------------------- 349 (393)
T ss_dssp BSSCG-----G--------GBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECBCCCGG----------------------
T ss_pred eccCc-----c--------ccCCcEEEEEcCCC-CCHHHHHHHHHHhCCEEEecCccc----------------------
Confidence 11110 0 01245888988622 22345666653 236666655321
Q ss_pred CCCCCeEEEEe-cCCCH----HHHHHHHHHHHH
Q 009604 502 GIMDNLVRFSF-GVEDF----EDLKADVLQALH 529 (531)
Q Consensus 502 gi~~~lIRlSv-GlE~~----edli~dL~~AL~ 529 (531)
..++.|||++ +...+ +.+++.|.++++
T Consensus 350 -~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~ 381 (393)
T 2huf_A 350 -TAGQVFRIGLMGQNATTERVDRVLQVFQEAVA 381 (393)
T ss_dssp -GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred -ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHH
Confidence 0257899999 75433 444455554443
No 107
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.7e-22 Score=211.33 Aligned_cols=273 Identities=14% Similarity=0.127 Sum_probs=185.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-----------------CCCHHH
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----------------PADMEG 277 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-----------------~~d~e~ 277 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+....+ +..|.++..++ ..|+++
T Consensus 118 ~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~ 193 (447)
T 3b46_A 118 AENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNI----ELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQ 193 (447)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHH
T ss_pred hhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEeCCCccccccccccccCcccCHHH
Confidence 456777877889999999999999999999999999866443 34466665553 137899
Q ss_pred HHHhccCCCcEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCEEEEeCCCCCCcc------cccc---ccCCcEEEECC
Q 009604 278 LEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN------QKAL---SLGADLVLHSA 345 (531)
Q Consensus 278 Le~al~~~~tklV~lesP~NPtG~v~---dl~~I~~la~~~gi~lIvD~a~a~~~~------~~~l---~~gaDivv~S~ 345 (531)
|++++++ ++++|++++|+||||.++ ++++|+++|++||++||+|++|..... ...+ ..+.|+++.|+
T Consensus 194 l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~ 272 (447)
T 3b46_A 194 FEKAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSA 272 (447)
T ss_dssp HHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEH
T ss_pred HHHhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecC
Confidence 9999986 499999999999999997 488999999999999999999875321 1111 24789999999
Q ss_pred ccccccCCCceEEEEEe-ChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCC
Q 009604 346 TKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAHP 418 (531)
Q Consensus 346 sK~lgg~g~v~gG~iv~-~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~p 418 (531)
||+++..|.+ .|++++ ++++++.+.........+.++...+.+...|+. +....++..++++.+.+.|+++
T Consensus 273 sK~~~~~G~r-iG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 350 (447)
T 3b46_A 273 GKSFAATGWR-IGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL- 350 (447)
T ss_dssp HHHTTCTTSC-CEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred chhcCCcchh-hEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 9999866654 688888 889988887654433333444444443344443 2334455567777888888765
Q ss_pred CceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC--------------HHHHHHHHHHcC-CCCcccccCCcccccc
Q 009604 419 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--------------LTATIKFIDALK-IPYIAPSFGGCESIVD 483 (531)
Q Consensus 419 ~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~--------------~~~~~~fl~~L~-~~~iavS~Gg~~Sli~ 483 (531)
++. +..|. .|.+++++++.. .....+|.+.|. ..++.+..|+.+..-
T Consensus 351 g~~-~~~~~----------------~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~- 412 (447)
T 3b46_A 351 GLP-YTAPE----------------GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIK- 412 (447)
T ss_dssp TCC-EECCS----------------BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCG-
T ss_pred CCe-ecCCC----------------eeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCC-
Confidence 332 22221 356788887531 124456776663 457777666443210
Q ss_pred cCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 484 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 484 ~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
+ + .+..++.||||++. + ++.++...+.|.
T Consensus 413 -~----~----------~~~~~~~iRls~~~-~-~e~l~~~~~~l~ 441 (447)
T 3b46_A 413 -E----H----------EKAAENLLRFAVCK-D-DAYLENAVERLK 441 (447)
T ss_dssp -G----G----------GGGGTTEEEEECCS-C-HHHHHHHHHHGG
T ss_pred -C----c----------cCCCCCEEEEEEeC-C-HHHHHHHHHHHH
Confidence 0 0 00125789999996 3 444555444443
No 108
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.90 E-value=7.1e-22 Score=200.91 Aligned_cols=252 Identities=15% Similarity=0.163 Sum_probs=173.5
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCcEEE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSLF 290 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~~tklV 290 (531)
+++++++++++++.+++..+ +||+|+++.+.|.+.. ..++..|+++..++.+ |+++|+++ . ++++|
T Consensus 69 ~~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~-~~~~v 139 (337)
T 3p1t_A 69 DNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYR----ARIAVSGLRHFEIGLTDDLLLDPNDLAQV--S-RDDCV 139 (337)
T ss_dssp GGEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHH----HHHTTSCCEEEEECBCTTSSBCHHHHTTC--C-TTEEE
T ss_pred HHEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHH----HHHHHcCCEEEEecCCCCCCCCHHHHHhh--c-CCCEE
Confidence 45556555568999998877 9999999999998855 3456678888888643 78888876 3 48999
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcccc---ccccCCcEEEECCccccccCCCceEEEEEeChHHH
Q 009604 291 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV 367 (531)
Q Consensus 291 ~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~---~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li 367 (531)
++++|+||||.++|+++|.++|+++++ +|+|++|....... ....+.++++.|+||.++.+|. ..|+++++++++
T Consensus 140 ~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~~~~~ 217 (337)
T 3p1t_A 140 VLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGL-RLGALFGPSELI 217 (337)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTT-CCEEEECCHHHH
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcch-heEEEEeCHHHH
Confidence 999999999999999999999999997 66699987432211 1123567999999999975554 368999999998
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCc
Q 009604 368 TQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF 444 (531)
Q Consensus 368 ~~l~~~~~~~G~~~s~~~a~l~l~~L---~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~ 444 (531)
+.++.....+ ..+......+...+ +.+..++++..++++.+.+.|+++ ++. + ++. .
T Consensus 218 ~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~----------------~ 276 (337)
T 3p1t_A 218 AAMKRKQWFC--NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYR-V-ASS----------------E 276 (337)
T ss_dssp HHHHTTSCTT--CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-B-CCC----------------S
T ss_pred HHHHhhcCCC--CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCE-E-CCC----------------C
Confidence 8887654332 23333333323333 345566677777888888999876 332 1 111 3
Q ss_pred ccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 009604 445 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 524 (531)
Q Consensus 445 g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL 524 (531)
++++++.++.. + .+.+.|+..++.++.|..+. . ++.||||++. ++.++.|
T Consensus 277 ~~~~~~~~~~~-~---~~~~~l~~~gi~v~~g~~~~----------------------~-~~~iRis~~~---~~~~~~l 326 (337)
T 3p1t_A 277 ANFVLVENAAG-E---RTLRFLRERGIQVKDAGQFG----------------------L-HHHIRISIGR---EEDNDRL 326 (337)
T ss_dssp SSEEEEECTTT-H---HHHHHHHHTTEECEEGGGGT----------------------C-CSEEEEECCC---HHHHHHH
T ss_pred CeEEEEEcCCH-H---HHHHHHHHCCeEEEECccCC----------------------C-CCeEEEecCC---HHHHHHH
Confidence 56788877543 2 33444544577777664431 1 4789999994 4444555
Q ss_pred HHHHH
Q 009604 525 LQALH 529 (531)
Q Consensus 525 ~~AL~ 529 (531)
.++|+
T Consensus 327 ~~al~ 331 (337)
T 3p1t_A 327 LAALA 331 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 109
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.90 E-value=4.8e-22 Score=208.86 Aligned_cols=271 Identities=14% Similarity=0.146 Sum_probs=183.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCC------HHHHHHhccCCCcE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD------MEGLEAALNNNNVS 288 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d------~e~Le~al~~~~tk 288 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+....+ ...|+++..++.++ +++|++++++ +++
T Consensus 102 ~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~-~~~ 176 (409)
T 2gb3_A 102 PENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFA----KIAGVKLIPVTRRMEEGFAIPQNLESFINE-RTK 176 (409)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHH----HHHTCEEEEEECCGGGTSCCCTTGGGGCCT-TEE
T ss_pred HHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEEeccCCCCCCccHHHHHHhhCc-CCe
Confidence 467888888999999999999999999999999998865433 34577777776532 7888998887 499
Q ss_pred EEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc----ccccc--cCCcEEEECCccccccCCCceEEE
Q 009604 289 LFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--LGADLVLHSATKFIGGHNDVLAGS 359 (531)
Q Consensus 289 lV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~----~~~l~--~gaDivv~S~sK~lgg~g~v~gG~ 359 (531)
+|++++|+||+|.+++ +++|.++|+++|++||+|++|+.... ...+. .+.|+++.|+||.++..|. .+|+
T Consensus 177 ~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~ 255 (409)
T 2gb3_A 177 GIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGA-RVGC 255 (409)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGG-CCEE
T ss_pred EEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccc-eEEE
Confidence 9999999999999874 88999999999999999999875432 11122 3579999999999986553 4688
Q ss_pred EEeCh-HHHHHHHHHhhhcCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchh
Q 009604 360 ISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 434 (531)
Q Consensus 360 iv~~~-~li~~l~~~~~~~G~~~s~~~a~l~l~~L~----tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~ 434 (531)
+++++ ++++.++....... ..++...+.+...++ .+....++..++++.+.+.|+++ ++..+..|.
T Consensus 256 ~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~------- 326 (409)
T 2gb3_A 256 LITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPS------- 326 (409)
T ss_dssp EECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCS-------
T ss_pred EEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCC-------
Confidence 88888 88888877655443 445554444444442 24444555667788888888876 332101111
Q ss_pred hhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC------CcccccCCcccccccCccccccCCCHHHHHhcCCCCCeE
Q 009604 435 HIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP------YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLV 508 (531)
Q Consensus 435 ~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~------~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lI 508 (531)
.|.++++.+++ ....++.+.|... ++.+..|..+.. . .+..++.|
T Consensus 327 ---------~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~--~----------------~~~~~~~i 377 (409)
T 2gb3_A 327 ---------GAFYITAELPV--EDAEEFARWMLTDFNMDGETTMVAPLRGFYL--T----------------PGLGKKEI 377 (409)
T ss_dssp ---------BSSEEEEECSS--SCHHHHHHHHHHSCCBTTEEEECEEGGGGCS--S----------------TTTTSSEE
T ss_pred ---------eeEEEEEEeCC--CCHHHHHHHHHhccccccCcEEEeCchHhCC--C----------------CCCCCCEE
Confidence 24567777752 2344566666432 666655533210 0 01235789
Q ss_pred EEEecCC--CHHHHHHHHHHHHH
Q 009604 509 RFSFGVE--DFEDLKADVLQALH 529 (531)
Q Consensus 509 RlSvGlE--~~edli~dL~~AL~ 529 (531)
||+++.. +.+..++.|.++++
T Consensus 378 Ris~~~~~e~i~~~~~~l~~~l~ 400 (409)
T 2gb3_A 378 RIACVLEKDLLSRAIDVLMEGLK 400 (409)
T ss_dssp EEECCSCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHH
Confidence 9999931 12334444444443
No 110
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.90 E-value=7.1e-22 Score=206.40 Aligned_cols=266 Identities=16% Similarity=0.078 Sum_probs=187.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhcc----CCCc
Q 009604 214 GAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN----NNNV 287 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all--~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~----~~~t 287 (531)
+.++.+++++|+.++..++..+. ++||+|+++.+.|.++...+ +..|+++..++.+|+++|+++++ + ++
T Consensus 105 ~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~d~~~le~~l~~~~~~-~~ 179 (401)
T 2bwn_A 105 QKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGI----KRNAGPKRIFRHNDVAHLRELIAADDPA-AP 179 (401)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHH----HHSCCCEEEECTTCHHHHHHHHHHSCTT-SC
T ss_pred CCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHH----HHcCCeEEEEcCCCHHHHHHHHHhhccC-Cc
Confidence 56788999999987777776653 59999999999998876544 34688888898889999998886 4 48
Q ss_pred EEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc-------cccc--cCCcEEEECCccccccCCCceEE
Q 009604 288 SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALS--LGADLVLHSATKFIGGHNDVLAG 358 (531)
Q Consensus 288 klV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~-------~~l~--~gaDivv~S~sK~lgg~g~v~gG 358 (531)
++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... .... ...|+++.|++|.+++. ||
T Consensus 180 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~----GG 255 (401)
T 2bwn_A 180 KLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF----GG 255 (401)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC----CE
T ss_pred eEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCC----CC
Confidence 99999999999999999999999999999999999998743210 0011 13589999999999975 48
Q ss_pred EEEeChHHHHHHHHHhh--hcCCCchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCC
Q 009604 359 SISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSH 431 (531)
Q Consensus 359 ~iv~~~~li~~l~~~~~--~~G~~~s~~~a~l~l~~L~tl-----~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~ 431 (531)
++++++++++.++.... .+....++..+..+...++.+ ....++..++++.+.+.|++. ++. +..|
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----- 328 (401)
T 2bwn_A 256 YIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMP-IIDH----- 328 (401)
T ss_dssp EEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCC-BCCC-----
T ss_pred EEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCc-ccCC-----
Confidence 88899888887764322 222223344444444444443 344566667788888888765 332 1111
Q ss_pred chhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCC--CCCeE
Q 009604 432 PEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI--MDNLV 508 (531)
Q Consensus 432 p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi--~~~lI 508 (531)
.+++++|.++. .....++.+.|. ..++.+..+... +. ..+.|
T Consensus 329 ------------~~~~~~~~~~~-~~~~~~~~~~L~~~~gi~v~~~~~~----------------------~~~~~~~~i 373 (401)
T 2bwn_A 329 ------------GSHIVPVVIGD-PVHTKAVSDMLLSDYGVYVQPINFP----------------------TVPRGTERL 373 (401)
T ss_dssp ------------SSSCEEEECCC-HHHHHHHHHHHHHHHCEECCEECTT----------------------TSCTTCCEE
T ss_pred ------------CCCeEEEEeCC-hHHHHHHHHHHHhcCCEEEeecCCC----------------------CCCCCCceE
Confidence 14588998864 244566777763 456665543211 11 13689
Q ss_pred EEEecCCCHHHHHHHHHHHHHh
Q 009604 509 RFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 509 RlSvGlE~~edli~dL~~AL~~ 530 (531)
|||++..++++.++.+.++|++
T Consensus 374 Ris~~~~~t~~~i~~~~~~l~~ 395 (401)
T 2bwn_A 374 RFTPSPVHDLKQIDGLVHAMDL 395 (401)
T ss_dssp EECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEeeCCCCHHHHHHHHHHHHH
Confidence 9999988777777777777754
No 111
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.90 E-value=1.7e-22 Score=207.64 Aligned_cols=259 Identities=15% Similarity=0.090 Sum_probs=178.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCE--EEEcCCCccchHHHHHhhcccCCcEEEEeCCC----CHHHHHHhccCCCcE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITATVIDPA----DMEGLEAALNNNNVS 288 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~--VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~----d~e~Le~al~~~~tk 288 (531)
.+..++++||++|+.+++.+++++||+ |+++.+.|...+... ......|+++..++.. |+++|+++ .+ +++
T Consensus 63 ~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~d~~~l~~~-~~-~~~ 139 (359)
T 3pj0_A 63 KQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD-GLKELQQITPLLLGTANQLLTIDDIKSL-RE-PVS 139 (359)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHHCCEEEECSCTTSCCCHHHHHTC-SS-CCS
T ss_pred CCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc-hHHHhcCceEEecCCcCCCcCHHHHHhc-cC-Cce
Confidence 455688899999999999999999987 555555543322110 0112247888777643 88999988 55 599
Q ss_pred EEEEeCCCCCC-CcccCHHHH---HHHHHhcCCEEEEeCCCCCCc------cccccccCCcEEEECCccccccCCCceEE
Q 009604 289 LFFTESPTNPF-LRCVDVKLV---SDLCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAG 358 (531)
Q Consensus 289 lV~lesP~NPt-G~v~dl~~I---~~la~~~gi~lIvD~a~a~~~------~~~~l~~gaDivv~S~sK~lgg~g~v~gG 358 (531)
+|++++|+||+ |.+.+.+++ .++|+++|++||+|+++.... ....+..+.|+++.|+||+++++. +|
T Consensus 140 ~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---gg 216 (359)
T 3pj0_A 140 SVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIA---GA 216 (359)
T ss_dssp EEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSS---CE
T ss_pred EEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcc---eE
Confidence 99999999998 788876555 999999999999999975322 112233568999999999998774 58
Q ss_pred EEEeChHHHHHHHHHhhhcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhh
Q 009604 359 SISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHI 436 (531)
Q Consensus 359 ~iv~~~~li~~l~~~~~~~G~~~--s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l 436 (531)
++++++++++.++......+... ....+......++....++++..++++.+.+.|+++|++.....|.
T Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--------- 287 (359)
T 3pj0_A 217 ILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVP--------- 287 (359)
T ss_dssp EEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEEEESSSC---------
T ss_pred EEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCceeeccCC---------
Confidence 89999999999887655554322 1222222234555555667777888999999999887764322332
Q ss_pred hhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC
Q 009604 437 ATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE 515 (531)
Q Consensus 437 ~~~~~~g~g~ivsf~l~g~~-~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE 515 (531)
.++++++.++... .....+.+.|...++.+..|..+.. + ..+.+|+++|..
T Consensus 288 -------~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~---~------------------~~~~~r~~i~~~ 339 (359)
T 3pj0_A 288 -------VSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS---A------------------DVCAFEVSVGDA 339 (359)
T ss_dssp -------SSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE---T------------------TEEEEEEECCTT
T ss_pred -------cceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC---C------------------CceEEEEEecCc
Confidence 3567888886432 3456677777666777776633211 0 246899999965
Q ss_pred C
Q 009604 516 D 516 (531)
Q Consensus 516 ~ 516 (531)
.
T Consensus 340 ~ 340 (359)
T 3pj0_A 340 F 340 (359)
T ss_dssp G
T ss_pred c
Confidence 3
No 112
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.89 E-value=3.5e-22 Score=208.23 Aligned_cols=289 Identities=15% Similarity=0.116 Sum_probs=200.8
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHHhccCCC
Q 009604 214 GAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEAALNNNN 286 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~al~~~~ 286 (531)
+.+++++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|+++.+++.+ |+++|++++++ +
T Consensus 70 ~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~-~ 144 (391)
T 3dr4_A 70 GVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSV----TYCGATPVLVDNDPRTFNLDAAKLEALITP-R 144 (391)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTTCSBCGGGSGGGCCT-T
T ss_pred CCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHH----HHCCCEEEEEecCccccCcCHHHHHHhcCC-C
Confidence 6778999999999999999999 999999999999999876444 4458888888754 78999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccC--CcEEEECCc--cccccCCCceEEEEEe
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--KFIGGHNDVLAGSISG 362 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g--aDivv~S~s--K~lgg~g~v~gG~iv~ 362 (531)
+++|+ |+||+|.+.|+++|.++|+++|++||+|++|+.+........+ .|+++.|++ |++++ + .+|+++.
T Consensus 145 ~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~-g--~gg~~~~ 218 (391)
T 3dr4_A 145 TKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT-G--EGGMITT 218 (391)
T ss_dssp EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCC-B--SCEEEEE
T ss_pred ceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCc-C--CeEEEEE
Confidence 89888 5789999999999999999999999999999865433222222 478888855 99987 3 2677766
Q ss_pred C-hHHHHHHHHHhhhc--------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeC--
Q 009604 363 S-GKLVTQIRNLHHVL--------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHY-- 425 (531)
Q Consensus 363 ~-~~li~~l~~~~~~~--------------G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~-- 425 (531)
+ +++.+.++...... ...+.+..+.+.+..++.+....++..++++.+.+.|++. ++.....
T Consensus 219 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 297 (391)
T 3dr4_A 219 NDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHV 297 (391)
T ss_dssp SCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCC
T ss_pred CCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCC
Confidence 5 45667666543211 1234566666666666777777778888888999999876 4432221
Q ss_pred CCCCCCchhhhhhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCCcccccCCcccccccCccccc--cCCCHHHHHhcC
Q 009604 426 PGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY--WDLSQSERLKYG 502 (531)
Q Consensus 426 pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~-~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~--~~~~~~~~~~~g 502 (531)
+... ...+.++.+.++.. .....++.+.|...++.++.|.. .+.+.|....+ ..++..+.
T Consensus 298 ~~~~------------~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~-p~~~~~~~~~~~~~~~~~~~~---- 360 (391)
T 3dr4_A 298 ALTG------------RHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFH-PMHIMPPYAHLATDDLKIAEA---- 360 (391)
T ss_dssp CTTS------------CCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCC-CGGGSGGGGGGCCTTCHHHHH----
T ss_pred CCCC------------cceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCC-ccccChhhhhcCcCCChHHHH----
Confidence 1100 11234567777641 12345677777666777775532 23333322111 11222111
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 503 IMDNLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 503 i~~~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
+.+..|||+++...+++.++.+.++|+++
T Consensus 361 ~~~~~lrl~~~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 361 CGVDGLNLPTHAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp HHHHEEEECCCTTCCHHHHHHHHHHHHTT
T ss_pred HHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 12468999999999999999999998753
No 113
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.89 E-value=5.7e-22 Score=206.16 Aligned_cols=287 Identities=18% Similarity=0.184 Sum_probs=200.2
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------CCHHHHHHhccCCC
Q 009604 214 GAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ADMEGLEAALNNNN 286 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------~d~e~Le~al~~~~ 286 (531)
+.++++++++|++|+.+++.++ +++||+|+++.++|.++...+ +..|+++.+++. .|+++|++++++ +
T Consensus 53 ~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~ 127 (393)
T 1mdo_A 53 GNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMI----VLLGANPVMVDVDRDTLMVTPEHIEAAITP-Q 127 (393)
T ss_dssp CCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEECBCTTTCCBCHHHHHHHCCT-T
T ss_pred CCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHH----HHCCCEEEEEeccCCcCCCCHHHHHHhcCC-C
Confidence 6678999999999999999999 999999999999999876443 456888888763 378999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccC-CcEEEECCc--cccccCCCceEEEEEeC
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG-ADLVLHSAT--KFIGGHNDVLAGSISGS 363 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g-aDivv~S~s--K~lgg~g~v~gG~iv~~ 363 (531)
+++|+++ ||+|.+.|+++|.++|+++|+++|+|++|+.+.......++ .|+++.|++ |+++|. .+|+++.+
T Consensus 128 ~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~~~---~~g~~~~~ 201 (393)
T 1mdo_A 128 TKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCA---EGGIVVTD 201 (393)
T ss_dssp EEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSS---SCEEEEES
T ss_pred ceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCCccccc---cceEEEeC
Confidence 9999974 58999999999999999999999999999865332222345 899999999 998763 37888886
Q ss_pred -hHHHHHHHHHhhh----------------------cC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 009604 364 -GKLVTQIRNLHHV----------------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHP 418 (531)
Q Consensus 364 -~~li~~l~~~~~~----------------------~G--~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p 418 (531)
+++++.++..... .| ..+++..+.+.+..++.+....++..++++.+.+.|.+.+
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~ 281 (393)
T 1mdo_A 202 NPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLP 281 (393)
T ss_dssp CHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7888877654321 01 1245666666666777777777888888999999998876
Q ss_pred CceEEeC-CCCCCCchhhhhhhhcCCcccEEEEEEcC---CHHHHHHHHHHcCCCCcccccCCcccccccCccccc---c
Q 009604 419 KVKRVHY-PGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY---W 491 (531)
Q Consensus 419 ~v~~V~~-pgl~s~p~~~l~~~~~~g~g~ivsf~l~g---~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~---~ 491 (531)
+. +.. |.. .. .+.+.+++|.++. + ....++.+.|...++.++.|..+.. ..|..... .
T Consensus 282 -~~-~~~~~~~-~~----------~~~~~~~~v~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~~~~-~~~~~~~~~~~~ 346 (393)
T 1mdo_A 282 -FQ-PLSLPSW-EH----------IHAWHLFIIRVDEARCG-ITRDALMASLKTKGIGTGLHFRAAH-TQKYYRERFPTL 346 (393)
T ss_dssp -CE-ECCCCSS-CE----------ECCCSCEEEECCHHHHS-SCHHHHHHHHHHTTBCCBCCCCCGG-GSHHHHHHSTTC
T ss_pred -cc-cccCCCC-CC----------CceeEEEEEEecccccc-cCHHHHHHHHHhCCCCcccccCccc-cChhhhccCCcc
Confidence 43 221 110 00 1134578888862 1 2345667777666777777653310 01100000 0
Q ss_pred CCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 492 DLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 492 ~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.++..++ +.++.|||+++...+++.++.+.++|++
T Consensus 347 ~~~~~~~----~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 381 (393)
T 1mdo_A 347 TLPDTEW----NSERICSLPLFPDMTESDFDRVITALHQ 381 (393)
T ss_dssp CCHHHHH----HHTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CChhHHH----HHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 0111111 1246899999988888888888777764
No 114
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.89 E-value=1.4e-21 Score=206.31 Aligned_cols=268 Identities=14% Similarity=0.150 Sum_probs=178.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccC---
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN--- 284 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~~--- 284 (531)
.+.++++++|++++.+++.+++++||+|+++.+.|.+... ......|+++..++. .|+++|++++++
T Consensus 108 ~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 184 (428)
T 1iay_A 108 PERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR---DLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQK 184 (428)
T ss_dssp TTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH---HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHH
T ss_pred hhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHH---HHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHh
Confidence 4556666666799999999999999999999999988542 123456888887764 278999988863
Q ss_pred --CCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----cc--cccc-------CCc--EEEE
Q 009604 285 --NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QK--ALSL-------GAD--LVLH 343 (531)
Q Consensus 285 --~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~~--~l~~-------gaD--ivv~ 343 (531)
.++++|++++|+||||.+.+ +++|.++|+++|++||+|++|..... .. .+.. +.| +++.
T Consensus 185 ~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~ 264 (428)
T 1iay_A 185 SNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVY 264 (428)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEE
T ss_pred cCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEe
Confidence 24899999999999999999 89999999999999999999875321 11 1111 257 8999
Q ss_pred CCccccccCCCceEEEEEe-ChHHHHHHHHHhhhcCCCchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 009604 344 SATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-------TLHLRVQQQNSTALRMAKILE 415 (531)
Q Consensus 344 S~sK~lgg~g~v~gG~iv~-~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~-------tl~~r~~~~~~na~~La~~L~ 415 (531)
|+||.+|.+|. ..|++++ ++++++.++.....++ .++.....+...++ .+....++..++++.+.+.|+
T Consensus 265 s~sK~~g~~Gl-r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 341 (428)
T 1iay_A 265 SLSKDMGLPGF-RVGIIYSFNDDVVNCARKMSSFGL--VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLE 341 (428)
T ss_dssp ESTTTSSCGGG-CEEEEEESCHHHHHHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCc-eEEEEEeCCHHHHHHHHHHHhccc--CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986654 3677777 6788888776544332 33333333333332 223344555677788888888
Q ss_pred cCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC-----HHHHHHHHHHcCC-CCcccccCCcccccccCcccc
Q 009604 416 AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----LTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMS 489 (531)
Q Consensus 416 ~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~-----~~~~~~fl~~L~~-~~iavS~Gg~~Sli~~p~~~s 489 (531)
++ ++. + ++. ..|.+++++++.. ......+.+.|.. .++.+..|+.+..
T Consensus 342 ~~-g~~-~-~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~-------- 395 (428)
T 1iay_A 342 VV-GIK-C-LKN---------------NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC-------- 395 (428)
T ss_dssp HT-TCC-B-CCC---------------SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC--------
T ss_pred hc-CCc-c-cCC---------------CeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCC--------
Confidence 76 332 1 111 1366888888631 1244567777743 4766665543211
Q ss_pred ccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009604 490 YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 490 ~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL 528 (531)
..++.+||+++. .+++.++.+.++|
T Consensus 396 -------------~~~~~iRis~~~-~~~e~i~~~~~~l 420 (428)
T 1iay_A 396 -------------QEPGWFRVCFAN-MDDGTVDIALARI 420 (428)
T ss_dssp -------------SSSSEEEEECSS-SCHHHHHHHHHHH
T ss_pred -------------CCCCEEEEEEec-CCHHHHHHHHHHH
Confidence 015789999993 3333444444443
No 115
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.89 E-value=5.5e-22 Score=206.27 Aligned_cols=271 Identities=15% Similarity=0.133 Sum_probs=179.6
Q ss_pred cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEEE
Q 009604 217 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFF 291 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV~ 291 (531)
+++++++|++|+.+++.+++++||+|+++.+.|.+.. +...++..|+++..++. .|+++|++++++.++++|+
T Consensus 71 ~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~ 148 (396)
T 2ch1_A 71 TMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER--AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLF 148 (396)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEE
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEE
Confidence 4667778889999999999999999999999998742 11345566888888763 5899999999762389999
Q ss_pred EeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHH
Q 009604 292 TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI 370 (531)
Q Consensus 292 lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l 370 (531)
+++|+||||.+.|+++|.++|+++|++||+|++|+.+.. .....+++|+++.|++|+++++.+ .|+++.++++++.+
T Consensus 149 ~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g--~g~~~~~~~~~~~~ 226 (396)
T 2ch1_A 149 LTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPG--ITPISISPKALDVI 226 (396)
T ss_dssp EESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSS--CEEEEECHHHHHHH
T ss_pred EECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCC--eEEEEECHHHHHhh
Confidence 999999999999999999999999999999999874321 222345789999999998776543 38888888887776
Q ss_pred HHH--------------hhhc---------CCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCceE
Q 009604 371 RNL--------------HHVL---------GGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPKVKR 422 (531)
Q Consensus 371 ~~~--------------~~~~---------G~~~s~~~a~l~l~~L~t-----l~~r~~~~~~na~~La~~L~~~p~v~~ 422 (531)
... ...+ ..+.+......+...++. +....++..++++.+.+.|+++ ++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~- 304 (396)
T 2ch1_A 227 RNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLD- 304 (396)
T ss_dssp HTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCC-
T ss_pred hhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCe-
Confidence 431 0001 112333332322223332 3445566677888888888875 332
Q ss_pred EeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CCcccccCCcccccccCccccccCCCHHHHHhc
Q 009604 423 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 501 (531)
Q Consensus 423 V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~-~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~ 501 (531)
+..|. ..+ ..++++.|.++.+ ....++.+.|.. .++.+..|..+
T Consensus 305 ~~~~~----~~~--------~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~g~~~---------------------- 349 (396)
T 2ch1_A 305 IFVKD----PRH--------RLPTVTGIMIPKG-VDWWKVSQYAMNNFSLEVQGGLGP---------------------- 349 (396)
T ss_dssp BSSCS----GGG--------BCTTEEEEECCTT-CCHHHHHHHHHHHHCBCCBCCCGG----------------------
T ss_pred eccCC----ccc--------cCCceEEEEcCCC-CCHHHHHHHHHHhCCEEEecCccc----------------------
Confidence 11111 001 1356889988522 234456666532 35555544210
Q ss_pred CCCCCeEEEEe-cCCC----HHHHHHHHHHHHH
Q 009604 502 GIMDNLVRFSF-GVED----FEDLKADVLQALH 529 (531)
Q Consensus 502 gi~~~lIRlSv-GlE~----~edli~dL~~AL~ 529 (531)
..++.|||++ |... .+.+++.|.++++
T Consensus 350 -~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~ 381 (396)
T 2ch1_A 350 -TFGKAWRVGIMGECSTVQKIQFYLYGFKESLK 381 (396)
T ss_dssp -GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred -cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH
Confidence 0257899999 7543 4445555555543
No 116
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.89 E-value=7.9e-22 Score=203.62 Aligned_cols=266 Identities=14% Similarity=0.100 Sum_probs=174.8
Q ss_pred cEEE-eCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEE
Q 009604 217 STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLF 290 (531)
Q Consensus 217 ~~i~-~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV 290 (531)
+.++ ++||++|+.+++.+++++||+|+++.+.|.+.. +. ..+...|+++..++. .|+++|++++++ ++++|
T Consensus 72 ~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~-~~-~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~-~~~~v 148 (376)
T 3f0h_A 72 KAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHR-FV-QLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQ-NFTGL 148 (376)
T ss_dssp EEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHH-HH-HHHHHTTCCEEEEECCTTCCCCHHHHHTTTTS-CCCEE
T ss_pred eEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHH-HH-HHHHHcCCceEEEeCCCCCCCCHHHHHHhhcc-CceEE
Confidence 4555 567789999999999999999999988776633 22 345556777776653 489999998877 49999
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHH
Q 009604 291 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 369 (531)
Q Consensus 291 ~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~ 369 (531)
++++|+||+|.+.|+++|.++|+++|++||+|++++.+.. ......|+|+++.|+||++++..+ .|+++.++++++.
T Consensus 149 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~ 226 (376)
T 3f0h_A 149 LVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPG--ISVIVLAPRGVER 226 (376)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSS--CEEEEECHHHHHH
T ss_pred EEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCc--eEEEEECHHHHHH
Confidence 9999999999999999999999999999999999875432 233346799999999999994433 4788899988887
Q ss_pred HHHHhh-----------------hcCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCceEEeCC
Q 009604 370 IRNLHH-----------------VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAHPKVKRVHYP 426 (531)
Q Consensus 370 l~~~~~-----------------~~G~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~p~v~~V~~p 426 (531)
+..... ....+.+....+.+..+++. +....++..++++.+.+.|++.+ + .+ ++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~-~~-~~ 303 (376)
T 3f0h_A 227 VEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP-F-EL-VS 303 (376)
T ss_dssp HHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-E-EE-CC
T ss_pred hhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-C-cc-Cc
Confidence 763110 00112222221222233332 33344555566667777776542 2 12 11
Q ss_pred CCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-CcccccCCcccccccCccccccCCCHHHHHhcCCCC
Q 009604 427 GLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 505 (531)
Q Consensus 427 gl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~-~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~ 505 (531)
. . ..+.++.+..++ ....++.+.|... ++.+..|.. + ..+
T Consensus 304 ~---~-----------~~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~------~-----------------~~~ 344 (376)
T 3f0h_A 304 E---S-----------PANGVTSVHPTT--ANAYDIFLKLKDEYGIWICPNGG------E-----------------MKD 344 (376)
T ss_dssp S---S-----------BBTTEEEEEESS--SCHHHHHHHHHHHSSEECEECCG------G-----------------GTT
T ss_pred c---c-----------cCceEEEEeCCC--CCHHHHHHHHHHhCCEEEecCcc------c-----------------cCC
Confidence 1 0 123455565543 2344566666443 666655411 0 125
Q ss_pred CeEEEEecCCCHHHHHHHHHHHHH
Q 009604 506 NLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 506 ~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
+.||||++...+++.++.+.++|+
T Consensus 345 ~~lRis~~~~~t~e~i~~~~~~l~ 368 (376)
T 3f0h_A 345 TIFRVGHIGALTHEDNTTLVNAFK 368 (376)
T ss_dssp TCEEEECCSSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCHHHHHHHHHHHH
Confidence 789999997666666666555554
No 117
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.89 E-value=9.5e-22 Score=208.41 Aligned_cols=283 Identities=14% Similarity=0.068 Sum_probs=182.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCC--------------EEEEc-CCCccchHHHHH--hhcccCCcEEEEeC-----
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGG--------------HIVTT-TDCYRKTRIFIE--TVLPKMGITATVID----- 271 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD--------------~VIv~-~~~y~~t~~~~~--~~l~~~Gi~v~~vd----- 271 (531)
..++++++++|++|+.+++.+++++|| +|+++ .++|........ ..+...|..+..++
T Consensus 105 ~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (444)
T 3if2_A 105 TSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEE 184 (444)
T ss_dssp CGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEE
T ss_pred CHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccccccc
Confidence 357899999999999999999999998 78876 888887542110 12445566666554
Q ss_pred -----CCCHHHHHHh---ccCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc------cccc
Q 009604 272 -----PADMEGLEAA---LNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN------QKAL 334 (531)
Q Consensus 272 -----~~d~e~Le~a---l~~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~------~~~l 334 (531)
..|+++|+++ +++ ++++|++++|+||||.+++ +++|+++|+++|++||+|++|+.+.. ..+.
T Consensus 185 g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 263 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLN 263 (444)
T ss_dssp EEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCC
T ss_pred CccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccccc
Confidence 2489999988 566 4999999999999999999 78899999999999999999975322 1112
Q ss_pred ccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH------HHH-HHHHHHHHH
Q 009604 335 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHL-RVQQQNSTA 407 (531)
Q Consensus 335 ~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t------l~~-r~~~~~~na 407 (531)
..+.++++.|+||+ +++| ...|++++++++++.+.......+...++.....+...++. +.. ..+...++.
T Consensus 264 ~~~~~i~~~S~sK~-~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 341 (444)
T 3if2_A 264 WDNNTILCFSLSKI-GLPG-MRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQA 341 (444)
T ss_dssp CCTTEEEEEESTTT-TCGG-GCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHH
T ss_pred CCCCEEEEechhhc-cCCC-CceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 24678999999997 5444 34789999999998887765544333333333332222222 111 122344556
Q ss_pred HHHHHHHHc-CCCce-EEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccC
Q 009604 408 LRMAKILEA-HPKVK-RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP 485 (531)
Q Consensus 408 ~~La~~L~~-~p~v~-~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p 485 (531)
+.+.+.|.+ .+.+. .+..|. .|.++++.++........|.+.|...++.++.|..+......
T Consensus 342 ~~~~~~l~~~l~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~ 405 (444)
T 3if2_A 342 TLAVKLLKQALGDYPLMIHKPE----------------GAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDV 405 (444)
T ss_dssp HHHHHHHHHHSSSSSEEEECCC----------------BSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCC
T ss_pred HHHHHHHHHhcccCCceEecCC----------------ccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCC
Confidence 667777765 34431 222222 466888888741123456677776678888877654321000
Q ss_pred ccccccCCCHHHHHhcCCCCCeEEEEecCCCHH---HHHHHHHHHHH
Q 009604 486 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFE---DLKADVLQALH 529 (531)
Q Consensus 486 ~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~e---dli~dL~~AL~ 529 (531)
.. ....++.||||++. +.+ +.++.|.++++
T Consensus 406 ~~-------------~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~ 438 (444)
T 3if2_A 406 SD-------------YQHAHECIRMSIAA-DEQTLIDGIKVIGEVVR 438 (444)
T ss_dssp TT-------------CSGGGSEEEEESSS-CHHHHHHHHHHHHHHHH
T ss_pred cc-------------cccCCCeEEEEEeC-CHHHHHHHHHHHHHHHH
Confidence 00 00014789999998 433 33444444443
No 118
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.89 E-value=1.5e-21 Score=204.95 Aligned_cols=253 Identities=11% Similarity=0.096 Sum_probs=171.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccCCCc
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNNNV 287 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~~~~t 287 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... ++..|+++..++. .|+++|+++++++ +
T Consensus 104 ~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~ 178 (416)
T 1bw0_A 104 KDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETV----CKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK-T 178 (416)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT-E
T ss_pred cceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHH----HHHcCcEEEEeecCcccCCCCCHHHHHHHhccC-C
Confidence 56788888888999999999999999999999999986543 3445777766642 3799999999874 8
Q ss_pred EEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-c--------ccccc---CCcEEEECCccccccC
Q 009604 288 SLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-Q--------KALSL---GADLVLHSATKFIGGH 352 (531)
Q Consensus 288 klV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-~--------~~l~~---gaDivv~S~sK~lgg~ 352 (531)
++|++++|+||||.+.+ +++|.++|+++|++||+|++|..... . ....+ +.++++.|+||.++.+
T Consensus 179 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 258 (416)
T 1bw0_A 179 KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVP 258 (416)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG
T ss_pred eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCC
Confidence 99999999999999998 89999999999999999999875321 1 11111 2358889999998876
Q ss_pred CCceEEEEEeCh--HHHHHHH----HHhhhcCCCchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCce
Q 009604 353 NDVLAGSISGSG--KLVTQIR----NLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKILEAHPKVK 421 (531)
Q Consensus 353 g~v~gG~iv~~~--~li~~l~----~~~~~~G~~~s~~~a~l~l~~L~-----tl~~r~~~~~~na~~La~~L~~~p~v~ 421 (531)
|.. .|++++++ ++++.+. ..... ....++...+.+...++ .+....++..++++.+.+.|+++|++.
T Consensus 259 Glr-~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 336 (416)
T 1bw0_A 259 GWR-LGWLLYVDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA 336 (416)
T ss_dssp GGC-CEEEEEECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred Cce-EEEEEeeCchhhHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 643 57777654 3444333 22111 12334444444444443 345556667788888889998776653
Q ss_pred EEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC----HHHHHHHHHHc-CCCCcccccCCcccccccCccccccCCCHH
Q 009604 422 RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQS 496 (531)
Q Consensus 422 ~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~----~~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~ 496 (531)
+..|. .|.++++.++.. ......+.+.| +..++.+..|..+.
T Consensus 337 -~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~---------------- 383 (416)
T 1bw0_A 337 -PTMPR----------------GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH---------------- 383 (416)
T ss_dssp -ECCCC----------------BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT----------------
T ss_pred -ccCCC----------------eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC----------------
Confidence 22221 356778887521 01234555655 34566666553321
Q ss_pred HHHhcCCCCCeEEEEecC
Q 009604 497 ERLKYGIMDNLVRFSFGV 514 (531)
Q Consensus 497 ~~~~~gi~~~lIRlSvGl 514 (531)
.++.+|||++.
T Consensus 384 -------~~~~iRis~~~ 394 (416)
T 1bw0_A 384 -------APGFTRLTTTR 394 (416)
T ss_dssp -------CTTEEEEECCS
T ss_pred -------CCCeEEEEecC
Confidence 14689999985
No 119
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.89 E-value=1e-21 Score=202.41 Aligned_cols=289 Identities=16% Similarity=0.164 Sum_probs=193.6
Q ss_pred CCCcEEEeCChHHHHHHHHHHh---ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCC
Q 009604 214 GAESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNN 285 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al---l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~ 285 (531)
|.+++++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|+++.+++.+ |+++|++++++
T Consensus 46 ~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~d~~~l~~~i~~- 120 (375)
T 2fnu_A 46 GVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANML----LESGYTPVFAGIKNDGNIDELALEKLINE- 120 (375)
T ss_dssp TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHH----HHTTCEEEECCBCTTSSBCGGGSGGGCCT-
T ss_pred CCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHH----HHCCCEEEEeccCCCCCCCHHHHHhhcCc-
Confidence 4457999999999999999999 899999999999999876544 3368888888753 78999999987
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccC--CcEEEECCc--cccccCCCceEEEEE
Q 009604 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--KFIGGHNDVLAGSIS 361 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g--aDivv~S~s--K~lgg~g~v~gG~iv 361 (531)
++++|++++| +|.+.|+++|.++|+++|++||+|++++.+........+ .|+++.|++ |++++ | +||+++
T Consensus 121 ~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~-g--~g~~~~ 194 (375)
T 2fnu_A 121 RTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-A--EGGAVV 194 (375)
T ss_dssp TEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-S--SCEEEE
T ss_pred CceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc-c--CceEEE
Confidence 4999888766 899999999999999999999999998765432211122 378888887 99976 4 466666
Q ss_pred eC-hHHHHHHHHHhhh--------------cC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEe
Q 009604 362 GS-GKLVTQIRNLHHV--------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVH 424 (531)
Q Consensus 362 ~~-~~li~~l~~~~~~--------------~G--~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~ 424 (531)
.+ +++++.++..... .+ ..+.+..+.+.+..++.+..+.++..++++.+.+.|++.|++. +.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~ 273 (375)
T 2fnu_A 195 TNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFT-PL 273 (375)
T ss_dssp ESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEE-ES
T ss_pred eCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cc
Confidence 54 6787877664321 11 1355666666665667777778888899999999999877653 22
Q ss_pred CCCCCCCchhhhhhhhcCCcccEEEEEEcCCHH-HHHHHHHHcCCCCcccccCCcccccccCccc-c--ccCCCHHHHHh
Q 009604 425 YPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT-ATIKFIDALKIPYIAPSFGGCESIVDQPAIM-S--YWDLSQSERLK 500 (531)
Q Consensus 425 ~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~-~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~-s--~~~~~~~~~~~ 500 (531)
.+.... .+.+.++.+.++.... ....+.+.|...++.++.+ +..+..++... . ...++..+
T Consensus 274 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~-~~p~~~~~~~~~~~~~~~~~~~~--- 338 (375)
T 2fnu_A 274 HPLLKD-----------KSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVH-YKPIYQYQLYQQLFNTAPLKSAE--- 338 (375)
T ss_dssp GGGCSS-----------CCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCC-CCCGGGSHHHHHHHCCCCCHHHH---
T ss_pred CCCCCC-----------CcceEEEEEEeCccccchHHHHHHHHHHCCCCcccc-ccccccchhhhcCCCccCChHHH---
Confidence 110000 0123455667753111 4566777776567666632 11111111000 0 00011000
Q ss_pred cCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 501 YGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 501 ~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
...++.|||+++.+.+++.++.+.++|++
T Consensus 339 -~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 367 (375)
T 2fnu_A 339 -DFYHAEISLPCHANLNLESVQNIAHSVLK 367 (375)
T ss_dssp -HHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred -HHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 01246899999998887777877777753
No 120
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.89 E-value=1.6e-21 Score=204.33 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=179.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCC-----EEEEc-CCCccchHHHHHh--hcccCCcEEEEeCC------CCHHHHH
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGG-----HIVTT-TDCYRKTRIFIET--VLPKMGITATVIDP------ADMEGLE 279 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD-----~VIv~-~~~y~~t~~~~~~--~l~~~Gi~v~~vd~------~d~e~Le 279 (531)
.+++++++++|++|+.+++.+++++|| +|+++ .++|.+....... .+...+..+..++. .|+++|+
T Consensus 97 ~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 176 (417)
T 3g7q_A 97 EPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH 176 (417)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC
T ss_pred CcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc
Confidence 357889999999999999999999988 99997 8999875533211 12233455555543 3777777
Q ss_pred HhccCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc------ccccccCCcEEEECCccccc
Q 009604 280 AALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIG 350 (531)
Q Consensus 280 ~al~~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~------~~~l~~gaDivv~S~sK~lg 350 (531)
+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.+.. ..+...+.++++.|+||+ +
T Consensus 177 --~~~-~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~ 252 (417)
T 3g7q_A 177 --IGE-ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKL-G 252 (417)
T ss_dssp --CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGG-T
T ss_pred --ccc-CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechhc-c
Confidence 666 4999999999999999998 88899999999999999999975321 112224678999999994 5
Q ss_pred cCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH------HHH-HHHHHHHHHHHHHHHHHc-CCCc-e
Q 009604 351 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHL-RVQQQNSTALRMAKILEA-HPKV-K 421 (531)
Q Consensus 351 g~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t------l~~-r~~~~~~na~~La~~L~~-~p~v-~ 421 (531)
+.|. ..|++++++++++.+.......+...++.....+...++. +.. ..++..++.+.+.+.|.+ .+.+ -
T Consensus 253 ~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 331 (417)
T 3g7q_A 253 LPGS-RCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERC 331 (417)
T ss_dssp CTTS-CCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTC
T ss_pred CCCc-ceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 5553 4689999999999888766655544444444433333322 111 223344566677777766 3432 1
Q ss_pred EEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhc
Q 009604 422 RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 501 (531)
Q Consensus 422 ~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~ 501 (531)
.+..|. .|.++++.++........+.+.|...++.+..|..+...... . .
T Consensus 332 ~~~~~~----------------~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~------~--------~ 381 (417)
T 3g7q_A 332 LIHKPE----------------GAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDK------P--------W 381 (417)
T ss_dssp EEECCC----------------BSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSS------C--------C
T ss_pred eeeCCC----------------cceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCcc------c--------c
Confidence 222232 466888888741123456667676667888777654321000 0 0
Q ss_pred CCCCCeEEEEecCCCH---HHHHHHHHHHHH
Q 009604 502 GIMDNLVRFSFGVEDF---EDLKADVLQALH 529 (531)
Q Consensus 502 gi~~~lIRlSvGlE~~---edli~dL~~AL~ 529 (531)
+..++.||||++. +. ++.++.|.++++
T Consensus 382 ~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~ 411 (417)
T 3g7q_A 382 PHTHQCMRMNYVP-EPDKIEAGVKILAEEIE 411 (417)
T ss_dssp GGGGGEEEEESCS-CHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 0014789999997 33 333444444443
No 121
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.89 E-value=4.8e-22 Score=202.41 Aligned_cols=239 Identities=13% Similarity=0.098 Sum_probs=164.0
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEE
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLF 290 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV 290 (531)
++++++++|++|+.+++.++++ |+|+++.+.|.+. . +...++..|+++..++. .|+++|++++++.++++|
T Consensus 53 ~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~-~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v 128 (353)
T 2yrr_A 53 LVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQ-R-VAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMV 128 (353)
T ss_dssp EEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHH-H-HHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEE
T ss_pred ceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchH-H-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEE
Confidence 4566777788999999998876 8999999888875 2 22345566888877764 489999999976238999
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHH
Q 009604 291 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 369 (531)
Q Consensus 291 ~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~ 369 (531)
++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. .....+++|+++.|++|+++++.+ .|++++++++++.
T Consensus 129 ~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~ 206 (353)
T 2yrr_A 129 ALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPG--LAPIAASLEARKA 206 (353)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSS--CEEEEECHHHHHH
T ss_pred EEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCc--eEEEEECHHHHHH
Confidence 9999999999999999999999999999999999864322 222335789999999997665433 4899999988776
Q ss_pred HHH-------------H--hhhcCCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 370 IRN-------------L--HHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 370 l~~-------------~--~~~~G~~~s~~~a~l~l~~L~t-----l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
++. . ......+.+....+.+...++. +....++..++++.+.+.|++. ++. +..|.
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-- 282 (353)
T 2yrr_A 207 FTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFR-PYPKA-- 282 (353)
T ss_dssp CCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCE-ESCSS--
T ss_pred hccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCc-cccCc--
Confidence 541 0 1112223444333333333333 3345566777888888888876 443 22111
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCC
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGG 477 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg 477 (531)
...+.+++|.++.+ ....++.+.|...++.+..|.
T Consensus 283 ------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~ 317 (353)
T 2yrr_A 283 ------------SPLPTVLVVRPPEG-VDADRLVRALYAEGVAVAGGI 317 (353)
T ss_dssp ------------SBCTTEEEEECCTT-CCHHHHHHHHHHTTEECEECC
T ss_pred ------------cCCCeEEEEECCCC-CCHHHHHHHHHHCCEEEeCCc
Confidence 01356788888522 234566666655566666553
No 122
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.88 E-value=1.8e-21 Score=205.70 Aligned_cols=274 Identities=13% Similarity=0.056 Sum_probs=181.2
Q ss_pred CCCcEEEeCChHHHH--HHHHHHhcc--C----------CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCH
Q 009604 214 GAESTVIMASGMSAS--TVMLLALVP--A----------GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADM 275 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai--~~al~all~--p----------GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~d~ 275 (531)
..+++++++++++++ .+++.+++. | ||+|+++.|+|.+....+ +..|.++..++. .|+
T Consensus 94 ~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~----~~~g~~~~~v~~~~~g~d~ 169 (427)
T 3ppl_A 94 PVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSIT----ERFGFEMISVPMNEDGPDM 169 (427)
T ss_dssp CGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH----HHTTCEEEEEEEETTEECH
T ss_pred CcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHH----HHcCCEEEEeCCCCCCCCH
Confidence 346777777777999 578888877 6 999999999998866443 445777776653 389
Q ss_pred HHHHHhccCCCcEEEEEe-CCCCCCCcccCHH---HHHHHH-HhcCCEEEEeCCCCCCcc-------cccc-------cc
Q 009604 276 EGLEAALNNNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLN-------QKAL-------SL 336 (531)
Q Consensus 276 e~Le~al~~~~tklV~le-sP~NPtG~v~dl~---~I~~la-~~~gi~lIvD~a~a~~~~-------~~~l-------~~ 336 (531)
++|+++++..++++|++. +|+||||.+++.+ +|+++| +++|++||+|++|+.... .+.. ..
T Consensus 170 ~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (427)
T 3ppl_A 170 DAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNP 249 (427)
T ss_dssp HHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCT
T ss_pred HHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCC
Confidence 999999953359999876 8899999999877 888888 899999999999875211 0111 23
Q ss_pred CCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 009604 337 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTALR 409 (531)
Q Consensus 337 gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t-------l~~r~~~~~~na~~ 409 (531)
+.++++.|+||. +++|. ..|++++++++++.+.......+...+......+...++. +....+...++.+.
T Consensus 250 ~~~i~~~S~SK~-~~~G~-r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (427)
T 3ppl_A 250 NRFWAFTSTSKI-TLAGA-GVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNK 327 (427)
T ss_dssp TSEEEEEESTTT-SCTTS-SCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEechhhc-cCcCc-cEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHH
Confidence 567999999999 44443 4789999999999888776655555555544443333322 22222333445556
Q ss_pred HHHHHHcC-C---CceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccC
Q 009604 410 MAKILEAH-P---KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP 485 (531)
Q Consensus 410 La~~L~~~-p---~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p 485 (531)
+.+.|.++ + .+ .+..|. .|.++++.+++. ....+.+.|...++.+..|+.+....
T Consensus 328 l~~~L~~~l~~~~~~-~~~~p~----------------~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~g~~~~~~-- 386 (427)
T 3ppl_A 328 VLEILDSRLAEYGVA-QWTVPA----------------GGYFISLDVVPG--TASRVAELAKEAGIALTGAGSSYPLR-- 386 (427)
T ss_dssp HHHHHHHHHGGGTCC-EECCCS----------------BSSCEEEECSTT--CHHHHHHHHHHTTEECCCTTTTSGGG--
T ss_pred HHHHHHHhcCCCCce-EEeCCC----------------ccEEEEEECCcc--hHHHHHHHHHHCCCEEecCcCcCCCC--
Confidence 66666542 2 22 222221 367889998753 34566677766788888754321100
Q ss_pred ccccccCCCHHHHHhcCCCCCeEEEEecCCC---HHHHHHHHHHHHH
Q 009604 486 AIMSYWDLSQSERLKYGIMDNLVRFSFGVED---FEDLKADVLQALH 529 (531)
Q Consensus 486 ~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~---~edli~dL~~AL~ 529 (531)
.+..++.||||++..+ .++.++.|.++++
T Consensus 387 ---------------~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~ 418 (427)
T 3ppl_A 387 ---------------QDPENKNLRLAPSLPPVEELEVAMDGVATCVL 418 (427)
T ss_dssp ---------------CCTTSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCCeEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 0113689999999853 3344455555543
No 123
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.88 E-value=3.8e-21 Score=202.53 Aligned_cols=290 Identities=13% Similarity=0.116 Sum_probs=194.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHHhccCCC
Q 009604 214 GAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEAALNNNN 286 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~al~~~~ 286 (531)
|.+++++++||++|+.+++.++ +++||+|+++.++|.+....+ ...|+++.+++.+ |+++|++++++ +
T Consensus 56 g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~ 130 (418)
T 2c81_A 56 GVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAV----LNVNALPVFVDVEADTYCIDPQLIKSAITD-K 130 (418)
T ss_dssp TCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTTCSBCHHHHGGGCCT-T
T ss_pred CCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHH----HHcCCEEEEEecCCCCCCcCHHHHHHhhCC-C
Confidence 5667999999999999999999 899999999999999876444 3568888887643 79999999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc--ccccccCCcEEEECC--ccccccCCCceEEEEEe
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKALSLGADLVLHSA--TKFIGGHNDVLAGSISG 362 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~--~~~l~~gaDivv~S~--sK~lgg~g~v~gG~iv~ 362 (531)
+++|++ +||+|.+.|+++|.++|+++|++||+|++|+.+.. ......-.|+++.|+ ||++++ | .+|++++
T Consensus 131 ~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~-g--~~g~~~~ 204 (418)
T 2c81_A 131 TKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTA-G--EGGIIVT 204 (418)
T ss_dssp EEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCS-S--SCEEEEE
T ss_pred CeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCC-C--CeEEEEE
Confidence 999986 56899999999999999999999999999987642 122222247888887 999988 5 3788888
Q ss_pred C-hHHHHHHHHHhhh--------------cC------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009604 363 S-GKLVTQIRNLHHV--------------LG------------GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILE 415 (531)
Q Consensus 363 ~-~~li~~l~~~~~~--------------~G------------~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~ 415 (531)
+ +++++.++..... +. ..+.+..+.+....++.+..+.++..++++.+.+.|.
T Consensus 205 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~ 284 (418)
T 2c81_A 205 KNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALS 284 (418)
T ss_dssp SCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 6777777654321 10 1134555555555667777778888888999999998
Q ss_pred cCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcC---CHHHHHHHHHHcCCC-Ccc---cccCCcccccccCccc
Q 009604 416 AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALKIP-YIA---PSFGGCESIVDQPAIM 488 (531)
Q Consensus 416 ~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g---~~~~~~~fl~~L~~~-~ia---vS~Gg~~Sli~~p~~~ 488 (531)
+.|++.....|. .... ..-.++.|.++. ......++.+.|... ++. ++.|.. .+...|...
T Consensus 285 ~~~g~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~-p~~~~~~~~ 352 (418)
T 2c81_A 285 KIDGIKVMKRPP---QVSR--------QTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYL-PVHKNPLFC 352 (418)
T ss_dssp TSTTEEECCCCT---TEEE--------CCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCC-CGGGCTTCC
T ss_pred cCCCcccCCCCC---CCcc--------cccEEEEEEEccccccccCHHHHHHHHHHcCCCCccccccccc-ccccCchhc
Confidence 877653211111 0000 011367788862 012345666666544 666 666542 111112110
Q ss_pred c--c----------------cCCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHHHh
Q 009604 489 S--Y----------------WDLSQSERLKYGIMDNLVRFSFGVED-FEDLKADVLQALHA 530 (531)
Q Consensus 489 s--~----------------~~~~~~~~~~~gi~~~lIRlSvGlE~-~edli~dL~~AL~~ 530 (531)
. + ..++..+. +.++.|||+++... +++.++.+.++|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lrl~~~~~~gt~edi~~~~~~l~~ 409 (418)
T 2c81_A 353 PWTKNRYLKSVRKTEAYWRGLHYPVSER----ASGQSIVIHHAILLAEPSHLSLLVDAVAE 409 (418)
T ss_dssp GGGCTTSCHHHHCCHHHHHTCCCHHHHH----HHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCChHHHH----HHhCEEEecCCccCCCHHHHHHHHHHHHH
Confidence 0 0 00111000 11368999998888 88888888877764
No 124
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.88 E-value=1.2e-21 Score=205.70 Aligned_cols=260 Identities=13% Similarity=0.080 Sum_probs=172.2
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------CCHHHHHHhccCC---C
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ADMEGLEAALNNN---N 286 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------~d~e~Le~al~~~---~ 286 (531)
++++++++|++|+.+++.+++++||+|+++.|.|.+....+ +..|.++..++. .|+++|++++++. +
T Consensus 102 ~~i~~t~g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 177 (413)
T 3t18_A 102 ISAIATPGGTGAIRSAIFSYLDEGDPLICHDYYWAPYRKIC----EEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDS 177 (413)
T ss_dssp EEEEEESHHHHHHHHHHHHHCCSSCEEEEESSCCTHHHHHH----HHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHC
T ss_pred CcEEEcCccHHHHHHHHHHhcCCCCEEEECCCCcccHHHHH----HHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcC
Confidence 37788888889999999999999999999999998865443 345778777763 3789999998741 2
Q ss_pred cE-EEEEeCC-CCCCCcccCHHHHH---HHHH------hcCCEEEEeCCCCCCccc-----ccc----ccCCc---EEEE
Q 009604 287 VS-LFFTESP-TNPFLRCVDVKLVS---DLCH------KKGAIVCIDGTFATPLNQ-----KAL----SLGAD---LVLH 343 (531)
Q Consensus 287 tk-lV~lesP-~NPtG~v~dl~~I~---~la~------~~gi~lIvD~a~a~~~~~-----~~l----~~gaD---ivv~ 343 (531)
++ +|++++| +||||.+.+.+++. ++|+ ++|++||+||+|...... ... ..+.+ +++.
T Consensus 178 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (413)
T 3t18_A 178 DRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAF 257 (413)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEE
Confidence 66 8999999 99999999876555 5555 899999999997532211 111 12223 7889
Q ss_pred CCccccccCCCceEEEEEe---ChHHHHHHHHHhhhc--C--CCchHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 009604 344 SATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHVL--G--GALNPNAAYLIIRGMK---------TLHLRVQQQNSTA 407 (531)
Q Consensus 344 S~sK~lgg~g~v~gG~iv~---~~~li~~l~~~~~~~--G--~~~s~~~a~l~l~~L~---------tl~~r~~~~~~na 407 (531)
|+||.++..|.+ .|++++ ++++++.+....... + ...+......+...++ .+....++..++.
T Consensus 258 S~sK~~~~~G~r-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 336 (413)
T 3t18_A 258 SMSKSHTAYGLR-SGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRA 336 (413)
T ss_dssp EHHHHTTCGGGC-CEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCccCCCcCcC-cEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999977644 577777 888888887654321 1 2234443333333222 2223334555677
Q ss_pred HHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCcc
Q 009604 408 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI 487 (531)
Q Consensus 408 ~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~ 487 (531)
+.+.+.|+++ ++. +..|. .+.++++.+. + ..+|.+.|...++.+..|
T Consensus 337 ~~l~~~l~~~-g~~-~~~~~----------------~~~~~~~~~~-~---~~~~~~~l~~~gv~v~~g----------- 383 (413)
T 3t18_A 337 DVFVTAAKEN-KLT-MIPYF----------------GGFFTFIPTD-K---AFDIVKDLEKENIFTIPS----------- 383 (413)
T ss_dssp HHHHHHHHHT-TCC-CBCCC----------------SSSCEEEECS-C---HHHHHHHHHHTTEECEEC-----------
T ss_pred HHHHHHHHHc-CCC-ccCCC----------------ceEEEEeCCC-C---HHHHHHHHHhCCEEEecC-----------
Confidence 7778888775 332 11111 1234555543 2 334555554445555433
Q ss_pred ccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 488 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 488 ~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
++.||||++..+.+++++.|.++|++
T Consensus 384 -----------------~~~iRis~~~~~~~~~l~~l~~~l~~ 409 (413)
T 3t18_A 384 -----------------AKGIRVAICGVGEEKIPKLVQRLAFY 409 (413)
T ss_dssp -----------------SSEEEECTTTSCGGGHHHHHHHHHHH
T ss_pred -----------------CCceEEEEeeCCHHHHHHHHHHHHHH
Confidence 36799999977777779999988864
No 125
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.88 E-value=4.1e-21 Score=202.63 Aligned_cols=290 Identities=16% Similarity=0.151 Sum_probs=174.1
Q ss_pred CcEEEeCChHHHHHHHHHHhc--------cCCCEEEEcCCCcc-------------chHHHHHhhcccCCcEEEEeCC--
Q 009604 216 ESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYR-------------KTRIFIETVLPKMGITATVIDP-- 272 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all--------~pGD~VIv~~~~y~-------------~t~~~~~~~l~~~Gi~v~~vd~-- 272 (531)
++++++++|++|+.+++.+++ ++||+|++..|.|. ++...+....+..|+++.+++.
T Consensus 79 ~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~ 158 (432)
T 3a9z_A 79 QDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSK 158 (432)
T ss_dssp GGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCT
T ss_pred CeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCc
Confidence 567888888899999998886 58986666666654 3333343444556888888874
Q ss_pred ----CCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcC----------CEEEEeCCCCCCcc-ccccccC
Q 009604 273 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG----------AIVCIDGTFATPLN-QKALSLG 337 (531)
Q Consensus 273 ----~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~g----------i~lIvD~a~a~~~~-~~~l~~g 337 (531)
.|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++| ++||+|++|+.+.. ......+
T Consensus 159 ~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~ 237 (432)
T 3a9z_A 159 VNGQVEVEDILAAVRP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLG 237 (432)
T ss_dssp TTSSCCHHHHHHTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHC
T ss_pred ccCCcCHHHHHHhccC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcC
Confidence 378999999987 4999999999999999999999999999999 99999999976532 2223457
Q ss_pred CcEEEECCccccccCCCceEEEEEeChHH-HHHHHHH-------hhhcCCCchHHHHHHHHHHHHHH----HHHHHHHHH
Q 009604 338 ADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNL-------HHVLGGALNPNAAYLIIRGMKTL----HLRVQQQNS 405 (531)
Q Consensus 338 aDivv~S~sK~lgg~g~v~gG~iv~~~~l-i~~l~~~-------~~~~G~~~s~~~a~l~l~~L~tl----~~r~~~~~~ 405 (531)
.|+++.|+||++| . . +|+++++++. ...++.. ......+.+....+.+..+++.+ ....++..+
T Consensus 238 ~d~~~~s~~K~~g-~--~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~ 313 (432)
T 3a9z_A 238 VDFLTIVGHKFYG-P--R-IGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRD 313 (432)
T ss_dssp CSEEEEEGGGTTC-C--S-CEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEehhHhcC-C--c-ceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999885 2 2 6888887654 2222211 11111233443333333344433 333445556
Q ss_pred HHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccC
Q 009604 406 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP 485 (531)
Q Consensus 406 na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p 485 (531)
+++.+.+.|++.+++. +.+++.. +. ....+++++|.+++.......+++.++ ++.++.|..++..
T Consensus 314 ~~~~l~~~L~~~~g~~-~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~G~~~~~~--- 378 (432)
T 3a9z_A 314 IRDYLEERLEAEFGKR-IHLNSRF--PG-------VERLPNTCNFSIQGSQLRGYMVLAQCQ--TLLASVGASCHSD--- 378 (432)
T ss_dssp HHHHHHHHHHHHHGGG-EEESSCC--TT-------CCBCTTEEEEEECSTTCCHHHHHHHCS--SEECBSSCGGGGG---
T ss_pred HHHHHHHHHHhccCCc-EEEeCCC--Cc-------ccCCCCEEEEEeCCCCCcHHHHHHHhc--CeEEeccccccCC---
Confidence 6777777777654332 2221110 00 012466889998741112355666664 5666666544321
Q ss_pred ccccccCCCHHHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 486 AIMSYWDLSQSERLKYGIM----DNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 486 ~~~s~~~~~~~~~~~~gi~----~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
+...........|+. ++.||||++..++++.++.+.++|+
T Consensus 379 ----~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~ 422 (432)
T 3a9z_A 379 ----HEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLK 422 (432)
T ss_dssp ----GTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ----CCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 000011223344543 4899999997655555555555544
No 126
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.88 E-value=7.7e-21 Score=201.26 Aligned_cols=270 Identities=14% Similarity=0.126 Sum_probs=179.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcc-cCCcEEEEeCC-------CCHHHHHHhccC-
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KMGITATVIDP-------ADMEGLEAALNN- 284 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~-~~Gi~v~~vd~-------~d~e~Le~al~~- 284 (531)
..++++++++|++|+.+++.+++++||+|+++.+.|.+... .+. ..|.++..++. .|+++|++++++
T Consensus 110 ~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 185 (435)
T 3piu_A 110 DPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR----DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEA 185 (435)
T ss_dssp CGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH----HTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHH
T ss_pred CHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHH----HHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHH
Confidence 35788889999999999999999999999999999988653 333 56888877764 378999999864
Q ss_pred ----CCcEEEEEeCCCCCCCcccCH---HHHHHHHHhcCCEEEEeCCCCCCcc-----cccc----c---------cCCc
Q 009604 285 ----NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN-----QKAL----S---------LGAD 339 (531)
Q Consensus 285 ----~~tklV~lesP~NPtG~v~dl---~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l----~---------~gaD 339 (531)
.++++|++++|+||||.+++. ++|+++|+++|++||+|++|+.... .... + .+.+
T Consensus 186 ~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 265 (435)
T 3piu_A 186 EKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRV 265 (435)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGE
T ss_pred HhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCE
Confidence 148999999999999999875 7888889999999999999865211 1111 1 1223
Q ss_pred EEEECCccccccCCCceEEEEEe-ChHHHHHHHHHhhhcCCCchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 009604 340 LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-------TLHLRVQQQNSTALRMA 411 (531)
Q Consensus 340 ivv~S~sK~lgg~g~v~gG~iv~-~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~-------tl~~r~~~~~~na~~La 411 (531)
+++.|+||.+|..|. ..|++++ ++++.+.++......+. ++.....+...++ .+..+.++..++++.+.
T Consensus 266 i~i~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (435)
T 3piu_A 266 HVVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATKMSSFGLV--SSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLV 342 (435)
T ss_dssp EEEEESSSSSCCGGG-CEEEEEESCHHHHHHHHHHGGGSCC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeecccCCCce-eEEEEEeCCHHHHHHHHHHhhcCCC--CHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999975553 4677777 56677777655443332 2222222222222 22334455567777888
Q ss_pred HHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC-----HHHHHHHHHHc-CCCCcccccCCcccccccC
Q 009604 412 KILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----LTATIKFIDAL-KIPYIAPSFGGCESIVDQP 485 (531)
Q Consensus 412 ~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~-----~~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p 485 (531)
+.|+++ ++. + ++. ..|.++++.++.. .....++.+.| +..++.+..|..+..
T Consensus 343 ~~L~~~-g~~-~-~~~---------------~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---- 400 (435)
T 3piu_A 343 SGLQKS-GIS-C-LNG---------------NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC---- 400 (435)
T ss_dssp HHHHTT-TCE-E-CCC---------------CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC----
T ss_pred HHHHhc-CCc-c-cCC---------------CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC----
Confidence 888765 332 1 111 1346888888641 11445666665 344776666644321
Q ss_pred ccccccCCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHH
Q 009604 486 AIMSYWDLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH 529 (531)
Q Consensus 486 ~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE---~~edli~dL~~AL~ 529 (531)
..++.+||+++.. +.++.++.|.++++
T Consensus 401 -----------------~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~ 430 (435)
T 3piu_A 401 -----------------TEPGWFRVCFANLPERTLDLAMQRLKAFVG 430 (435)
T ss_dssp -----------------SSTTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 1257899999874 33444555555554
No 127
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.88 E-value=3.2e-21 Score=202.03 Aligned_cols=264 Identities=17% Similarity=0.178 Sum_probs=176.5
Q ss_pred CcEEEeCChHHHHHHHHHHhc------cCCCE-EEEcCCCccchHHHHHhhcccC--CcEEEEeCCCCHHHHHHhccCCC
Q 009604 216 ESTVIMASGMSASTVMLLALV------PAGGH-IVTTTDCYRKTRIFIETVLPKM--GITATVIDPADMEGLEAALNNNN 286 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all------~pGD~-VIv~~~~y~~t~~~~~~~l~~~--Gi~v~~vd~~d~e~Le~al~~~~ 286 (531)
++++++++|++++.+++.+++ ++||+ |+++.+.|+++...+....+.. |+++.+++. +++|++++++ +
T Consensus 89 ~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~l~~~i~~-~ 165 (416)
T 1qz9_A 89 GEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--PEELPQAIDQ-D 165 (416)
T ss_dssp TSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--GGGHHHHCST-T
T ss_pred ccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--HHHHHHHhCC-C
Confidence 567788888899988888776 89996 5566667776654443332333 888888887 8899999987 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccc-cCCCceE-EEEEeC
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG-GHNDVLA-GSISGS 363 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lg-g~g~v~g-G~iv~~ 363 (531)
+++|++++|+||||.+.|+++|.++|+++|++||+|++++.+.. .....+++|+++.|++|+++ |.+ + |+++.+
T Consensus 166 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~---~~g~l~~~ 242 (416)
T 1qz9_A 166 TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPG---SQAFVWVS 242 (416)
T ss_dssp EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTT---CCCEEEEC
T ss_pred ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCC---CeEEEEEC
Confidence 99999999999999999999999999999999999999875432 22224578999999999975 444 4 888888
Q ss_pred hHHHHHHHHHh-----------------------hhcCCCchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 009604 364 GKLVTQIRNLH-----------------------HVLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAKILE 415 (531)
Q Consensus 364 ~~li~~l~~~~-----------------------~~~G~~~s~~~a~l~l~~L~tl-----~~r~~~~~~na~~La~~L~ 415 (531)
+++++.++... ....++.+......+...++.+ ....++..++++.+.+.|+
T Consensus 243 ~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (416)
T 1qz9_A 243 PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVE 322 (416)
T ss_dssp TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 87766554311 1111233443333333334332 3455666777888888887
Q ss_pred cC-C--CceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccC
Q 009604 416 AH-P--KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD 492 (531)
Q Consensus 416 ~~-p--~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~ 492 (531)
+. | ++. +..|. .+ ...+++++|.+++ ...+.+.|...++.+..
T Consensus 323 ~~~~~~g~~-~~~~~---~~---------~~~~~~~~~~~~~----~~~l~~~l~~~gi~~~~----------------- 368 (416)
T 1qz9_A 323 QRCAAHELT-LVTPR---EH---------AKRGSHVSFEHPE----GYAVIQALIDRGVIGDY----------------- 368 (416)
T ss_dssp HHHTTSCCE-ECSCS---SG---------GGBCSEEEEECTT----HHHHHHHHHTTTEECEE-----------------
T ss_pred hhccCCCeE-EeCCC---CH---------HHcCCEEEEecCC----HHHHHHHHHhCCcEecc-----------------
Confidence 74 4 443 22221 00 0135688998863 34566666544443210
Q ss_pred CCHHHHHhcCCCCCeEEEEec-CCCHHHHHHHHHHHHH
Q 009604 493 LSQSERLKYGIMDNLVRFSFG-VEDFEDLKADVLQALH 529 (531)
Q Consensus 493 ~~~~~~~~~gi~~~lIRlSvG-lE~~edli~dL~~AL~ 529 (531)
..++.||||++ +..+++.++.+.++|+
T Consensus 369 ----------~~~~~lRis~~~~~~t~~~i~~~~~~l~ 396 (416)
T 1qz9_A 369 ----------REPRIMRFGFTPLYTTFTEVWDAVQILG 396 (416)
T ss_dssp ----------ETTTEEEEECCTTTCCHHHHHHHHHHHH
T ss_pred ----------CCCCeEEEeCcccCCCHHHHHHHHHHHH
Confidence 02578999998 4566665666555554
No 128
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.88 E-value=9.7e-22 Score=210.27 Aligned_cols=269 Identities=10% Similarity=0.073 Sum_probs=179.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCE---EEEcCCCccchHHHHHhhcccCCcEE-----EEeCC-----CCHHHHHHh
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGH---IVTTTDCYRKTRIFIETVLPKMGITA-----TVIDP-----ADMEGLEAA 281 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~---VIv~~~~y~~t~~~~~~~l~~~Gi~v-----~~vd~-----~d~e~Le~a 281 (531)
.+++++++++++++.+++.+++++||. |+++.+.|++....+...++..|+++ ...+. .|+++|+++
T Consensus 128 ~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~ 207 (465)
T 3e9k_A 128 EKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEV 207 (465)
T ss_dssp GGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHH
T ss_pred cCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHH
Confidence 357788888889999999999877665 99999999987765655566667653 22222 279999999
Q ss_pred cc---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-ccccccCCcEEEECCccccc-cCCCce
Q 009604 282 LN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG-GHNDVL 356 (531)
Q Consensus 282 l~---~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~gaDivv~S~sK~lg-g~g~v~ 356 (531)
|+ + ++++|++++|+||||.+.|+++|.++|+++|++||+|++++.+.. .+...+++|+++.|++|+++ |++.
T Consensus 208 i~~~~~-~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~-- 284 (465)
T 3e9k_A 208 IEKEGD-SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGG-- 284 (465)
T ss_dssp HHHHGG-GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTC--
T ss_pred HHhcCC-CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCc--
Confidence 96 4 499999999999999999999999999999999999999887643 33345789999999999994 4442
Q ss_pred EEEEEeChHHHHHHHHHhh-------------------------hcCCCchHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 009604 357 AGSISGSGKLVTQIRNLHH-------------------------VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNST 406 (531)
Q Consensus 357 gG~iv~~~~li~~l~~~~~-------------------------~~G~~~s~~~a~l~l~~L~tl-----~~r~~~~~~n 406 (531)
.|+++.++++++.+..... ...++.+......+..+++.+ ....++..++
T Consensus 285 ~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~ 364 (465)
T 3e9k_A 285 IAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLL 364 (465)
T ss_dssp CCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred eEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3667777776554331100 001133343333333444433 3334455566
Q ss_pred HHHHHHHHHcC----------CCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccC
Q 009604 407 ALRMAKILEAH----------PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG 476 (531)
Q Consensus 407 a~~La~~L~~~----------p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~G 476 (531)
++.+.+.|+++ ++++ +..|. .+ ...|++++|.++.+ ...+.+.|...++.+.++
T Consensus 365 ~~~l~~~L~~~~~~~~~~~~~~g~~-~~~p~---~~---------~~~g~~~~~~~~~~---~~~l~~~L~~~Gi~v~~~ 428 (465)
T 3e9k_A 365 TGYLEYLIKHNYGKDKAATKKPVVN-IITPS---HV---------EERGCQLTITFSVP---NKDVFQELEKRGVVCDKR 428 (465)
T ss_dssp HHHHHHHHHHHCC---------CEE-ECSCS---SG---------GGBCSCEEEEECCT---TCCHHHHHHTTTEECEEE
T ss_pred HHHHHHHHHhhccccccccCCCCeE-EeCCC---CH---------hhcccEEEEEecCC---HHHHHHHHHHCCEEEecC
Confidence 77777777764 3332 22221 01 12478899998632 234555555445444311
Q ss_pred CcccccccCccccccCCCHHHHHhcCCCCCeEEEEe-cCCCHHHHHHHHHHHHH
Q 009604 477 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GVEDFEDLKADVLQALH 529 (531)
Q Consensus 477 g~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSv-GlE~~edli~dL~~AL~ 529 (531)
.++.||||+ ++.++++.++.+.++|+
T Consensus 429 ---------------------------~~~~iRis~~~~~~t~edi~~~~~~l~ 455 (465)
T 3e9k_A 429 ---------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLT 455 (465)
T ss_dssp ---------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHH
T ss_pred ---------------------------CCCEEEEeCcccCCCHHHHHHHHHHHH
Confidence 247899998 67777766666666665
No 129
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.87 E-value=9.3e-21 Score=199.51 Aligned_cols=273 Identities=11% Similarity=0.091 Sum_probs=178.7
Q ss_pred CCcEEEeCChHHHHH--HHHHHhcc--C---------CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCHHH
Q 009604 215 AESTVIMASGMSAST--VMLLALVP--A---------GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEG 277 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~--~al~all~--p---------GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~d~e~ 277 (531)
.++++++++|++++. +++.+++. + ||+|+++.|.|.+....+ +..|.++..++. .|+++
T Consensus 87 ~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~g~d~~~ 162 (423)
T 3ez1_A 87 AENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL----QTLGFELLTVDMQSDGPDVDA 162 (423)
T ss_dssp GGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHH----HHHTCEEEEEEEETTEECHHH
T ss_pred hhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHH----HHcCCEEEeccCCCCCCCHHH
Confidence 457777777789997 88888888 8 599999999998866544 334777766653 38999
Q ss_pred HHHhcc-CCCcEEEEEe-CCCCCCCcccCHH---HHHHHH-HhcCCEEEEeCCCCCCcc-c-------ccc-------cc
Q 009604 278 LEAALN-NNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLN-Q-------KAL-------SL 336 (531)
Q Consensus 278 Le~al~-~~~tklV~le-sP~NPtG~v~dl~---~I~~la-~~~gi~lIvD~a~a~~~~-~-------~~l-------~~ 336 (531)
|+++++ ..++++|++. +|+||||.+++.+ +|+++| +++|++||+|++|..... . ... ..
T Consensus 163 l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (423)
T 3ez1_A 163 VERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYP 242 (423)
T ss_dssp HHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCT
T ss_pred HHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCC
Confidence 999994 2259999865 8999999999877 777888 899999999999873211 0 111 23
Q ss_pred CCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 009604 337 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT--------LHLRVQQQNSTAL 408 (531)
Q Consensus 337 gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t--------l~~r~~~~~~na~ 408 (531)
+.++++.|+||.+ .+|. ..|++++++++++.++......+...++...+.+...++. +....+...++.+
T Consensus 243 ~~~i~~~S~sK~~-~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 320 (423)
T 3ez1_A 243 DRAFVFASTSKIT-FAGA-GLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFR 320 (423)
T ss_dssp TSEEEEEESTTTS-CSSS-SCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCchhhc-cCCc-ceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 5679999999973 3343 3789999999999988777666555566555544444443 1122222334445
Q ss_pred HHHHHHHc-CCCc---eEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCC-cccccc
Q 009604 409 RMAKILEA-HPKV---KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGG-CESIVD 483 (531)
Q Consensus 409 ~La~~L~~-~p~v---~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg-~~Sli~ 483 (531)
.+.+.|.+ .+.+ ..+..|. .|.++++.+++. ..+.+.+.|+..++.+..|| .+...
T Consensus 321 ~l~~~l~~~l~~~~~~~~~~~p~----------------~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~g~~~~~~- 381 (423)
T 3ez1_A 321 AVDEVLRAELGEGGEYATWTLPK----------------GGYFISLDTAEP--VADRVVKLAEAAGVSLTPAGATYPAG- 381 (423)
T ss_dssp HHHHHHHHHHTTTTSSEEECCCS----------------BSSCEEEEESSS--CHHHHHHHHHHTTEECCCTTTTSSTT-
T ss_pred HHHHHHHHhcCcCCCceEEeCCC----------------ccEEEEEECCCC--cHHHHHHHHHHCCcEEecCcccccCC-
Confidence 55555543 2221 1233332 466889999753 34556666666677777733 32110
Q ss_pred cCccccccCCCHHHHHhcCCCCCeEEEEecCCCH---HHHHHHHHHHHH
Q 009604 484 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF---EDLKADVLQALH 529 (531)
Q Consensus 484 ~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~---edli~dL~~AL~ 529 (531)
.+..++.||||++..+. ++.++.|.++++
T Consensus 382 -----------------~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~ 413 (423)
T 3ez1_A 382 -----------------QDPHNRNLRLAPTRPPVEEVRTAMQVVAACIR 413 (423)
T ss_dssp -----------------CCSSSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 01136899999997533 344455555544
No 130
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.87 E-value=1.2e-20 Score=196.68 Aligned_cols=286 Identities=16% Similarity=0.151 Sum_probs=193.4
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-------ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHH
Q 009604 214 GAESTVIMASGMSASTVMLLAL-------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEA 280 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al-------l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~ 280 (531)
|.+++++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|.++.+++.+ |+++|++
T Consensus 48 ~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~d~~~l~~ 123 (390)
T 3b8x_A 48 GSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPL----QQYGLRVKFVDIDINTLNIDIESLKE 123 (390)
T ss_dssp TCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEECBCTTTCSBCHHHHHH
T ss_pred CCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCccccCcCHHHHHH
Confidence 5668999999999999999998 889999999999999876544 3468888887643 8999999
Q ss_pred hccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCC--cEEEECC--ccccccCCCce
Q 009604 281 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVLHSA--TKFIGGHNDVL 356 (531)
Q Consensus 281 al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~ga--Divv~S~--sK~lgg~g~v~ 356 (531)
++++ ++++|+++ |++|.+.|+++|.++|+++|++||+|++++.+...+....|. |+.+.|+ +|.+++. .
T Consensus 124 ~i~~-~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s~~~~k~~~~g---~ 196 (390)
T 3b8x_A 124 AVTD-STKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATM---E 196 (390)
T ss_dssp HCCT-TEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSS---S
T ss_pred HhCc-CCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEEEEccCCCCCccC---C
Confidence 9987 49999986 466788999999999999999999999998665444444565 5555442 3334321 3
Q ss_pred EEEEEeCh-HHHHHHHHHhhh-----------------------------cC--CCchHHHHHHHHHHHHHHHHHHHHHH
Q 009604 357 AGSISGSG-KLVTQIRNLHHV-----------------------------LG--GALNPNAAYLIIRGMKTLHLRVQQQN 404 (531)
Q Consensus 357 gG~iv~~~-~li~~l~~~~~~-----------------------------~G--~~~s~~~a~l~l~~L~tl~~r~~~~~ 404 (531)
||++++++ ++.++++..... .| ..+++..+++++..++.+..+.++..
T Consensus 197 gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~ 276 (390)
T 3b8x_A 197 GGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRR 276 (390)
T ss_dssp CEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888876 666666543310 11 12567777777777888888888888
Q ss_pred HHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCCcccccCCcccccc
Q 009604 405 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVD 483 (531)
Q Consensus 405 ~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~-~~~~~~fl~~L~~~~iavS~Gg~~Sli~ 483 (531)
++++.+.+.|++.|++. +..+ +. .....++.+.++.. ....+.+.+.|+..++.++.+-..++..
T Consensus 277 ~~~~~l~~~L~~~~~~~-~~~~--~~-----------~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~ 342 (390)
T 3b8x_A 277 KNAEYFLDKFKDHPYLD-VQQE--TG-----------ESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLK 342 (390)
T ss_dssp HHHHHHHHHHTTCSSEE-ECCC--CS-----------BCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGG
T ss_pred HHHHHHHHHhcCCCCcc-cCCC--CC-----------CcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhh
Confidence 99999999998877653 2211 10 01123466666521 0124456666655566666521112212
Q ss_pred c-Cccc--cc---cCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009604 484 Q-PAIM--SY---WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 484 ~-p~~~--s~---~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL 528 (531)
+ |... .| ..++..+.. ..+.|||+++...+++.++.+.++|
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 343 NTDVLKYFDYTVHNNVDNAEYL----DKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp CHHHHTTCEEEESSCCHHHHHH----HHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred cchhhhcCCCCCcCCChHHHHH----hcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 2 2211 11 112212211 2468999999999999999998876
No 131
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.87 E-value=4.6e-21 Score=201.55 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=166.8
Q ss_pred cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------CCHHHHHHhccCC---Cc
Q 009604 217 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ADMEGLEAALNNN---NV 287 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------~d~e~Le~al~~~---~t 287 (531)
+++++++|++|+.+++.+++++||+|+++.|.|.+.... +...|.++..++. .|+++|++++++. ++
T Consensus 104 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 104 RSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVI----CSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQT 179 (418)
T ss_dssp EEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHH----HHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCS
T ss_pred cEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHH----HHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCC
Confidence 677788888999999999999999999999999876543 4456888888763 2789999998741 25
Q ss_pred E-EEEEeCC-CCCCCcccCHHHHH---HHHH------hcCCEEEEeCCCCCCccc-----ccc----ccCCc---EEEEC
Q 009604 288 S-LFFTESP-TNPFLRCVDVKLVS---DLCH------KKGAIVCIDGTFATPLNQ-----KAL----SLGAD---LVLHS 344 (531)
Q Consensus 288 k-lV~lesP-~NPtG~v~dl~~I~---~la~------~~gi~lIvD~a~a~~~~~-----~~l----~~gaD---ivv~S 344 (531)
+ +|++++| +||||.+.+.+++. ++|+ ++|++||+|++|...... ... ....| +++.|
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 259 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYS 259 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEe
Confidence 5 8999999 99999999866555 5555 899999999998543211 011 12223 78899
Q ss_pred CccccccCCCceEEEEEe---ChHHHHHHHHHhhhc----CCCchHHHHHHHHHHHHH----------HHHHHHHHHHHH
Q 009604 345 ATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHVL----GGALNPNAAYLIIRGMKT----------LHLRVQQQNSTA 407 (531)
Q Consensus 345 ~sK~lgg~g~v~gG~iv~---~~~li~~l~~~~~~~----G~~~s~~~a~l~l~~L~t----------l~~r~~~~~~na 407 (531)
+||.++.+|.+ .|++++ ++++++.+....... ....+......+...++. +....++..+++
T Consensus 260 ~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 338 (418)
T 3rq1_A 260 LSKGFTMYGQR-VGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRA 338 (418)
T ss_dssp STTTTTCCSSC-CEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCCc-ceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877654 577777 888888887654321 122344444333333321 112234445666
Q ss_pred HHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCcc
Q 009604 408 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI 487 (531)
Q Consensus 408 ~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~ 487 (531)
+.+.+.|+++ ++. + ++. ..|.++++.+. +..+|.+.|...++.+..|
T Consensus 339 ~~l~~~L~~~-g~~-~-~~~---------------~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g----------- 385 (418)
T 3rq1_A 339 DIFKQEAAQV-GLP-M-LPY---------------RGGFFITIPTD----SANAICEELKKEHIYVIAL----------- 385 (418)
T ss_dssp HHHHHHHHHH-TCC-C-CCC---------------CSSSEEEEECT----THHHHHHHHHHTTEECEEC-----------
T ss_pred HHHHHHHHhc-CCC-C-CCC---------------CceEEEEcCCC----CHHHHHHHHHhCCEEEecC-----------
Confidence 7777777764 321 1 111 02335555553 2344555555445554433
Q ss_pred ccccCCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHHh
Q 009604 488 MSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALHA 530 (531)
Q Consensus 488 ~s~~~~~~~~~~~~gi~~~lIRlSvGl---E~~edli~dL~~AL~~ 530 (531)
++.||||++. |+.+..++.|.+++++
T Consensus 386 -----------------~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 414 (418)
T 3rq1_A 386 -----------------ANGIRIAACGIPKCQMTGLAEKIYNAMKS 414 (418)
T ss_dssp -----------------SSEEEEEGGGSCHHHHTTHHHHHHHHHHH
T ss_pred -----------------CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 3579999983 2334556666666654
No 132
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.87 E-value=2.3e-20 Score=190.70 Aligned_cols=262 Identities=17% Similarity=0.157 Sum_probs=177.0
Q ss_pred CCCc-EEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccC--CcEEEEeCCC----CHHHHHH-hccCC
Q 009604 214 GAES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM--GITATVIDPA----DMEGLEA-ALNNN 285 (531)
Q Consensus 214 g~e~-~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~--Gi~v~~vd~~----d~e~Le~-al~~~ 285 (531)
|.+. ++++++|++|+.+++.+++++||+|+++.+.|.+++.. ..+... |+++..++.+ |+++|++ ++++.
T Consensus 57 g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~~ 134 (356)
T 1v72_A 57 ERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKV 134 (356)
T ss_dssp TSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSST
T ss_pred CCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhcc
Confidence 5444 68889999999999999999999999999988775432 002333 7788777753 7999999 88751
Q ss_pred ------CcEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCEEEEeCCCCCC------cccccc--ccCCcEEEECCccc
Q 009604 286 ------NVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATP------LNQKAL--SLGADLVLHSATKF 348 (531)
Q Consensus 286 ------~tklV~lesP~NPtG~v~---dl~~I~~la~~~gi~lIvD~a~a~~------~~~~~l--~~gaDivv~S~sK~ 348 (531)
++++|++++|+| +|.++ ++++|.++|++||++||+|++|..+ ...... ..++|+++.|+||+
T Consensus 135 ~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~ 213 (356)
T 1v72_A 135 GDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN 213 (356)
T ss_dssp TCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG
T ss_pred hhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC
Confidence 489999999987 99955 5789999999999999999998532 111111 13689999999999
Q ss_pred cccCCCceE-EEEEeChHHHHHHHHHhhhcCCCch--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCceEE
Q 009604 349 IGGHNDVLA-GSISGSGKLVTQIRNLHHVLGGALN--PNAAYLIIRGMK--TLHLRVQQQNSTALRMAKILEAHPKVKRV 423 (531)
Q Consensus 349 lgg~g~v~g-G~iv~~~~li~~l~~~~~~~G~~~s--~~~a~l~l~~L~--tl~~r~~~~~~na~~La~~L~~~p~v~~V 423 (531)
+++ +| |++++++++++.++......|.... ...+...++.++ .+....++..++++.+.+.|++.+++..
T Consensus 214 -g~~---~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~- 288 (356)
T 1v72_A 214 -GVL---AAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEV- 288 (356)
T ss_dssp -TCS---SCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE-
T ss_pred -CCc---CccEEEEECHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEE-
Confidence 432 34 6888898888887665443342211 122211222221 1223455666778888889987776643
Q ss_pred eCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCC
Q 009604 424 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI 503 (531)
Q Consensus 424 ~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi 503 (531)
..|. .++++++.++. ++.+.|...++.+..|.. +
T Consensus 289 ~~~~----------------~~~~~~~~~~~------~~~~~l~~~gi~v~~g~~-----------------------~- 322 (356)
T 1v72_A 289 LGGT----------------EANILFCRLDS------AMIDALLKAGFGFYHDRW-----------------------G- 322 (356)
T ss_dssp ESCC----------------CSSEEEEEECH------HHHHHHHHTTCBCBCSSS-----------------------S-
T ss_pred ccCC----------------CccEEEEEcCH------HHHHHHHhcCeEEecccc-----------------------C-
Confidence 2332 35678888741 455555444555554420 1
Q ss_pred CCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 504 MDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 504 ~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
++.+||+++...+++.++.+.++|++
T Consensus 323 -~~~iRi~~~~~~~~~~i~~~~~~l~~ 348 (356)
T 1v72_A 323 -PNVVRFVTSFATTAEDVDHLLNQVRL 348 (356)
T ss_dssp -TTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred -CCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 46899999988777777777777654
No 133
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.87 E-value=1.9e-20 Score=202.90 Aligned_cols=272 Identities=13% Similarity=0.061 Sum_probs=179.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeC-------CCCHHHHHHhccCC-
Q 009604 215 AESTVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-------PADMEGLEAALNNN- 285 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all-~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd-------~~d~e~Le~al~~~- 285 (531)
.++++++++|++++.+++.+++ ++||+|+++.|.|......+ ...|.++..++ ..|+++|++++++.
T Consensus 157 ~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 232 (500)
T 3tcm_A 157 ADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASI----ALHGGALVPYYLNESTGWGLETSDVKKQLEDAR 232 (500)
T ss_dssp GGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHH----HHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHH
T ss_pred cccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHH----HHcCCEEEEEecccccCCCCCHHHHHHHHHHHH
Confidence 5788888899999999999998 89999999999998765443 44577777665 34899999998751
Q ss_pred ----CcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc-----ccc-----ccC------CcEEE
Q 009604 286 ----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL-----SLG------ADLVL 342 (531)
Q Consensus 286 ----~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~-----~~l-----~~g------aDivv 342 (531)
++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... ..+ .+| ..+++
T Consensus 233 ~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~ 312 (500)
T 3tcm_A 233 SRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSY 312 (500)
T ss_dssp HTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEE
T ss_pred hcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEE
Confidence 4899999999999999987 556777799999999999998764321 110 111 13778
Q ss_pred ECCcccc-ccCCCceEEEEEe---ChHHHHHHHHHhhhcCCCchHHHHHHHHHH--------------HHHHHHHHHHHH
Q 009604 343 HSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIRG--------------MKTLHLRVQQQN 404 (531)
Q Consensus 343 ~S~sK~l-gg~g~v~gG~iv~---~~~li~~l~~~~~~~G~~~s~~~a~l~l~~--------------L~tl~~r~~~~~ 404 (531)
+|+||.+ |..| ..+|++++ ++++++.+....... .+.+....+++... .+.+....++..
T Consensus 313 ~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 390 (500)
T 3tcm_A 313 QSVSKGYYGECG-KRGGYFEITGFSAPVREQIYKIASVN-LCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLA 390 (500)
T ss_dssp EESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHHHHHTT-CCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHH
T ss_pred ecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHHHHhcc-cCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHH
Confidence 8999998 4344 44788876 888888887765432 23333333322222 234455556677
Q ss_pred HHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHH-----------HHHH-HHHcCCCCcc
Q 009604 405 STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA-----------TIKF-IDALKIPYIA 472 (531)
Q Consensus 405 ~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~-----------~~~f-l~~L~~~~ia 472 (531)
++++.+.+.|++.|++.. ..|. .|.++++.+.-.... ...+ .+.|+..++.
T Consensus 391 ~~~~~l~~~L~~~~g~~~-~~~~----------------g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~ 453 (500)
T 3tcm_A 391 RRAKALEHAFNKLEGITC-NEAE----------------GAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIV 453 (500)
T ss_dssp HHHHHHHHHHHTSTTEEC-CCCC----------------BTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHhcCCCcEE-ecCC----------------eEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEE
Confidence 888899999998776532 1111 223344334321110 1122 2444445777
Q ss_pred cccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHH
Q 009604 473 PSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH 529 (531)
Q Consensus 473 vS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGl--E~~edli~dL~~AL~ 529 (531)
+..|..+.. + -..+.||||++. |+.++.++.|.++++
T Consensus 454 v~pg~~f~~---~-----------------~g~~~iRis~~~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 454 VVPGSGFGQ---V-----------------PGTWHFRCTILPQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp CEESTTTCC---C-----------------TTCCBEEEESCSCTTTHHHHHHHHHHHHH
T ss_pred EEeCcccCC---C-----------------CCCCEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 777754421 0 124689999994 345666777777665
No 134
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.87 E-value=6.9e-21 Score=206.62 Aligned_cols=258 Identities=12% Similarity=0.062 Sum_probs=180.8
Q ss_pred EEeCChHHHHHHHHHHhccCC--------CEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCC
Q 009604 219 VIMASGMSASTVMLLALVPAG--------GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNN 285 (531)
Q Consensus 219 i~~sSG~~Ai~~al~all~pG--------D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~ 285 (531)
+++++|++|+.+++.++.++| |+|+++.+.|.+.... +...|+++..++.+ |+++|+++++++
T Consensus 164 ~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~----~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~ 239 (514)
T 3mad_A 164 TVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKA----AQYFGIKLVRTPLDADYRADVAAMREAITPN 239 (514)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHH----HHHHTCEEEEECBCTTSCBCHHHHHHHCCTT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHH----HHHcCCeeEEeeeCCCCCCCHHHHHHHhccC
Confidence 889999999999999998777 9999999999986543 34458888888754 899999999874
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc------------ccccccCCcEEEECCccccccCC
Q 009604 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------------QKALSLGADLVLHSATKFIGGHN 353 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~------------~~~l~~gaDivv~S~sK~lgg~g 353 (531)
+++|++++|+||+|.+.|+++|.++|+++|++||+|++|+.+.. ......|+|+++.|++|+++++.
T Consensus 240 -~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~ 318 (514)
T 3mad_A 240 -TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAK 318 (514)
T ss_dssp -EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCS
T ss_pred -CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCC
Confidence 99999999999999999999999999999999999999875432 22234588999999999965543
Q ss_pred CceEEEEEeChHHHHHHHHH-hh-----------hcCCCch--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcC
Q 009604 354 DVLAGSISGSGKLVTQIRNL-HH-----------VLGGALN--PNAAYLIIRGM--KTLHLRVQQQNSTALRMAKILEAH 417 (531)
Q Consensus 354 ~v~gG~iv~~~~li~~l~~~-~~-----------~~G~~~s--~~~a~l~l~~L--~tl~~r~~~~~~na~~La~~L~~~ 417 (531)
+ .|+++.+++........ .. ..|.... ...++.+++.+ ..+..++++..++++++.+.|++.
T Consensus 319 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~ 396 (514)
T 3mad_A 319 G--TSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI 396 (514)
T ss_dssp S--CEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred C--eEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 2 46666665544322110 00 0122211 23344444333 345667788889999999999987
Q ss_pred CCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHH
Q 009604 418 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSE 497 (531)
Q Consensus 418 p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~ 497 (531)
+++..+ .+. .++++|..++ ....++.+.|...++.+ .+.
T Consensus 397 ~g~~~~-~~~-----------------~~~~~~~~~~--~~~~~l~~~L~~~Gi~v--~g~------------------- 435 (514)
T 3mad_A 397 PSLKIL-GDP-----------------LWVIAVASDE--LNIYQVMEEMAGRGWRL--NGL------------------- 435 (514)
T ss_dssp TTCEES-SCC-----------------SSEEEEECSS--SCHHHHHHHHHTTTCBC--EEE-------------------
T ss_pred CCeEEe-CCC-----------------eEEEEEeCCC--CCHHHHHHHHHhcCCEe--ccC-------------------
Confidence 766422 111 2478887754 23456667775544433 111
Q ss_pred HHhcCCCCCeEEEEec-----CCCHHHHHHHHHHHHH
Q 009604 498 RLKYGIMDNLVRFSFG-----VEDFEDLKADVLQALH 529 (531)
Q Consensus 498 ~~~~gi~~~lIRlSvG-----lE~~edli~dL~~AL~ 529 (531)
+ .++.+|++++ .|+.+++++.|.++++
T Consensus 436 ----~-~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 436 ----H-RPPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp ----T-TTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred ----C-CCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 0 1357999998 2566777888877765
No 135
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.86 E-value=8.3e-21 Score=198.22 Aligned_cols=269 Identities=14% Similarity=0.153 Sum_probs=182.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc-------CC-CEEEEcCCCccchHHHHHhhc---------ccCCcEEEEeCCCCHH
Q 009604 214 GAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVL---------PKMGITATVIDPADME 276 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~-------pG-D~VIv~~~~y~~t~~~~~~~l---------~~~Gi~v~~vd~~d~e 276 (531)
+.++++++++|++|+.+++..++. +| |+|++..+.|++......... ...+..+..++..|++
T Consensus 95 ~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 174 (406)
T 4adb_A 95 FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDIN 174 (406)
T ss_dssp SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHH
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHH
Confidence 667899999999999999998765 66 999999999988643322221 1223456677778999
Q ss_pred HHHHhccCCCcEEEEEeCCCCCCCccc-----CHHHHHHHHHhcCCEEEEeCCCCCCc------cccccccCCcEEEECC
Q 009604 277 GLEAALNNNNVSLFFTESPTNPFLRCV-----DVKLVSDLCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSA 345 (531)
Q Consensus 277 ~Le~al~~~~tklV~lesP~NPtG~v~-----dl~~I~~la~~~gi~lIvD~a~a~~~------~~~~l~~gaDivv~S~ 345 (531)
+|++++++ ++++|+++ |+||+|.+. ++++|.++|++||++||+||+|.... .........|++ |+
T Consensus 175 ~l~~~l~~-~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~ 250 (406)
T 4adb_A 175 SASALIDD-STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TT 250 (406)
T ss_dssp HHHTTCST-TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EE
T ss_pred HHHHHhcC-CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Ee
Confidence 99999987 49999998 999999765 58999999999999999999986321 112233456777 56
Q ss_pred ccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCCceEE
Q 009604 346 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAHPKVKRV 423 (531)
Q Consensus 346 sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl--~~r~~~~~~na~~La~~L~~~p~v~~V 423 (531)
+|.++ .| ..+|++++++++++.+...........++..+..+...++.+ ....++..++++.+.+.|++...
T Consensus 251 sK~~~-~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~---- 324 (406)
T 4adb_A 251 AKALG-GG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINH---- 324 (406)
T ss_dssp CGGGG-TT-SCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred chhhc-CC-CCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----
Confidence 99999 34 457889999988877765433333445666666666666654 44455666777777777765311
Q ss_pred eCCCCCCCchhhhhhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcC
Q 009604 424 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 502 (531)
Q Consensus 424 ~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~-~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~g 502 (531)
.++.. ....+.|.+++|+++... ....++.+.|...++.+..++
T Consensus 325 ~~~~~----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~------------------------- 369 (406)
T 4adb_A 325 RYGLF----------SEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAG------------------------- 369 (406)
T ss_dssp HHCCE----------EEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESS-------------------------
T ss_pred hCCCc----------eEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecC-------------------------
Confidence 00100 011235789999997531 135567777755455544321
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 503 IMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 503 i~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
++.|||+++...+++.++.+.++|+
T Consensus 370 --~~~iRi~~~~~~~~e~i~~~~~~l~ 394 (406)
T 4adb_A 370 --GNVVRFAPALNVSEEEVTTGLDRFA 394 (406)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4789998877665555555554443
No 136
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.86 E-value=7.5e-21 Score=196.43 Aligned_cols=261 Identities=11% Similarity=0.071 Sum_probs=178.0
Q ss_pred CcEEEeCChHHHHHHHHHH---hc---cCC-CEEEEcCCCccchHHHHHhhccc----CCcE-----EEEeCCCCHHHHH
Q 009604 216 ESTVIMASGMSASTVMLLA---LV---PAG-GHIVTTTDCYRKTRIFIETVLPK----MGIT-----ATVIDPADMEGLE 279 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~a---ll---~pG-D~VIv~~~~y~~t~~~~~~~l~~----~Gi~-----v~~vd~~d~e~Le 279 (531)
++++++++|++|+.+++.. +. +|| |+|+++++.|++........... .+.. +..++..|+++|+
T Consensus 87 ~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 166 (375)
T 2eh6_A 87 GKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVY 166 (375)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHH
T ss_pred CeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHH
Confidence 6788899999999999865 35 788 99999999988754333222111 1222 5566777999999
Q ss_pred HhccCCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc-c---ccccccC--CcEEEECCcccc
Q 009604 280 AALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-N---QKALSLG--ADLVLHSATKFI 349 (531)
Q Consensus 280 ~al~~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~-~---~~~l~~g--aDivv~S~sK~l 349 (531)
+++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+... . .....+| .|++ |+||.+
T Consensus 167 ~~l~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~--s~SK~~ 243 (375)
T 2eh6_A 167 KLLDE-ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI--ALAKGL 243 (375)
T ss_dssp TTCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGG
T ss_pred HHhcC-CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE--EEcccc
Confidence 99987 4999999999999999988 9999999999999999999987321 1 1112335 7887 556999
Q ss_pred ccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 350 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 350 gg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
++ |. ..|++++++++++.++..........++..+..+...++.+....++..++++.+.+.|++.+.. . .
T Consensus 244 ~~-g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~-~--~---- 314 (375)
T 2eh6_A 244 GG-GV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGNYFKEKLKELGKG-K--V---- 314 (375)
T ss_dssp GT-TS-CCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-E--E----
T ss_pred cC-CC-CeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--c----
Confidence 85 33 35777777777766554211112233566665556666666555566677888888888875420 0 0
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEE
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVR 509 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIR 509 (531)
.+.|++++++++.+ ..++.+.|...++.+..+ .++.||
T Consensus 315 ------------~~~g~~~~~~~~~~---~~~~~~~l~~~gi~~~~~---------------------------~~~~iR 352 (375)
T 2eh6_A 315 ------------KGRGLMLGLELERE---CKDYVLKALEKGLLINCT---------------------------AGKVLR 352 (375)
T ss_dssp ------------EEETTEEEEECSSC---CHHHHHHHHHTTEECEEE---------------------------TTTEEE
T ss_pred ------------eEEEEEEEEEEcCc---HHHHHHHHHHCCCEEecC---------------------------CCCEEE
Confidence 12467899988643 234555554334333221 147899
Q ss_pred EEecCCCHHHHHHHHHHHHHh
Q 009604 510 FSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 510 lSvGlE~~edli~dL~~AL~~ 530 (531)
|+++...+++.++.+.++|++
T Consensus 353 i~~~~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 353 FLPPLIIQKEHIDRAISVLRE 373 (375)
T ss_dssp ECCCTTCCHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999987777777777777764
No 137
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.86 E-value=1.4e-20 Score=204.29 Aligned_cols=271 Identities=14% Similarity=0.047 Sum_probs=183.6
Q ss_pred cEEEeCChHHHHHHHHHHhccC--------CC-----EEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHH
Q 009604 217 STVIMASGMSASTVMLLALVPA--------GG-----HIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEG 277 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~p--------GD-----~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~ 277 (531)
..+++++|++|+.+++.++..+ || +|+++.+.|.... ..++..|++++.++.+ |+++
T Consensus 119 ~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~----~~~~~~G~~~~~v~~~~~~~~~d~~~ 194 (502)
T 3hbx_A 119 VGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE----KFARYFEVELKEVKLSEGYYVMDPQQ 194 (502)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH----HHHHHTTCEEEEECCBTTBCSCCHHH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH----HHHHHcCceeEEEecCCCcCcCCHHH
Confidence 3557889999999998887655 87 9999999998754 3445568888888632 8999
Q ss_pred HHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhc------CCEEEEeCCCCCCcc---cccc-----ccCCcEEEE
Q 009604 278 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPLN---QKAL-----SLGADLVLH 343 (531)
Q Consensus 278 Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~------gi~lIvD~a~a~~~~---~~~l-----~~gaDivv~ 343 (531)
|+++++++ |++|++++|+||+|.+.|+++|.++|+++ |++|++|++|+.+.. .... ..++|++..
T Consensus 195 l~~~i~~~-t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~ 273 (502)
T 3hbx_A 195 AVDMVDEN-TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINV 273 (502)
T ss_dssp HHHHCCTT-EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEE
T ss_pred HHHHHhhC-CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEE
Confidence 99999885 99999999999999999999999999999 999999999974321 1111 237899999
Q ss_pred CCccccccCCCceEEEEEeChHHHHHHHHH-hhhcC----------CCc--hHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 009604 344 SATKFIGGHNDVLAGSISGSGKLVTQIRNL-HHVLG----------GAL--NPNAAYLIIR--GMKTLHLRVQQQNSTAL 408 (531)
Q Consensus 344 S~sK~lgg~g~v~gG~iv~~~~li~~l~~~-~~~~G----------~~~--s~~~a~l~l~--~L~tl~~r~~~~~~na~ 408 (531)
|+||+++++.++ |++++.+++++...... ....+ ... .....|.+++ +.+.+..++++..++++
T Consensus 274 s~hK~l~~p~g~-G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~ 352 (502)
T 3hbx_A 274 SGHKYGLVYAGI-GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMI 352 (502)
T ss_dssp ETTTTTCCCSSC-EEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCCe-EEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999766543 44444455544221110 01111 111 2333444443 45667788899999999
Q ss_pred HHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCCcccccCCcccccccCcc
Q 009604 409 RMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQPAI 487 (531)
Q Consensus 409 ~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~-~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~ 487 (531)
++.+.|+++++++.+. +. + ..++++|.++++. .....+.+.|...++.++. ...|..
T Consensus 353 ~l~~~L~~~~~~~~~~-~~----~-----------~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~------~~~p~~ 410 (502)
T 3hbx_A 353 VLREGLEKTERFNIVS-KD----E-----------GVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPA------YTMPPN 410 (502)
T ss_dssp HHHHHHHTTTCEEECS-CS----S-----------SSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCE------EECCTT
T ss_pred HHHHHHHhCCCEEEEe-CC----C-----------CceEEEEEecCCCcCCHHHHHHHHHhCCcEEee------ccCCcc
Confidence 9999999988765332 21 0 2468999997531 2344677777665654431 111211
Q ss_pred ccccCCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHH
Q 009604 488 MSYWDLSQSERLKYGIMDNLVRFSFGVED----FEDLKADVLQALH 529 (531)
Q Consensus 488 ~s~~~~~~~~~~~~gi~~~lIRlSvGlE~----~edli~dL~~AL~ 529 (531)
. -....+||+++... .++++++|.++++
T Consensus 411 ~--------------~~~~~lRisv~~~~t~edid~li~~L~~~l~ 442 (502)
T 3hbx_A 411 A--------------QHITVLRVVIREDFSRTLAERLVIDIEKVMR 442 (502)
T ss_dssp C--------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred c--------------CCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 1 02468999999544 4555566655554
No 138
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.86 E-value=3e-20 Score=197.28 Aligned_cols=293 Identities=15% Similarity=0.151 Sum_probs=193.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHh---------ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHH
Q 009604 214 GAESTVIMASGMSASTVMLLAL---------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGL 278 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al---------l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~L 278 (531)
|.+++++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|+++.+++.+ |+++|
T Consensus 76 g~~~~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~~d~~~l 151 (437)
T 3bb8_A 76 GVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPT----IQNGLIPVFVDVDIPTYNVNASLI 151 (437)
T ss_dssp TCSEEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHH----HHTTCEEEECCEETTTTEECGGGH
T ss_pred CCCcEEEeCCHHHHHHHHHHHhhhcccccccCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEeccCccCCcCHHHH
Confidence 7778999999999999999998 889999999999999876544 3468888887643 78999
Q ss_pred HHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccC--CcEEEECCccccccCCCce
Q 009604 279 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSATKFIGGHNDVL 356 (531)
Q Consensus 279 e~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g--aDivv~S~sK~lgg~g~v~ 356 (531)
++++++ +|++|++++ ++|...|+++|.++|+++|++||+|++|+.+...+....| .|+++.|++|..+-.+. .
T Consensus 152 ~~~i~~-~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~s~~~~k~l~~g-~ 226 (437)
T 3bb8_A 152 EAAVSD-KTKAIMIAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAKHITMG-E 226 (437)
T ss_dssp HHHCCT-TEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECSTTSSSCCS-S
T ss_pred HHhcCC-CCeEEEEeC---CCCChhcHHHHHHHHHHcCCEEEEECccccCceECCeecccccCEEEEECcCCcCCCCC-C
Confidence 999987 499999964 3455589999999999999999999999865433333345 79998887544433332 3
Q ss_pred EEEEEeChHHHHH-HHHHhhh-------------------------------------cC--CCchHHHHHHHHHHHHHH
Q 009604 357 AGSISGSGKLVTQ-IRNLHHV-------------------------------------LG--GALNPNAAYLIIRGMKTL 396 (531)
Q Consensus 357 gG~iv~~~~li~~-l~~~~~~-------------------------------------~G--~~~s~~~a~l~l~~L~tl 396 (531)
+|+++++++.+.. ++..... .| ..+++..+.+++..++.+
T Consensus 227 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~ 306 (437)
T 3bb8_A 227 GGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERI 306 (437)
T ss_dssp CEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHH
Confidence 7999988665443 2221100 01 123466666666678887
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCc-ccEEEEEEcCCHHHHHHHHHHcCCCCccccc
Q 009604 397 HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGF-GGVVSFEVDGDLTATIKFIDALKIPYIAPSF 475 (531)
Q Consensus 397 ~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~-g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~ 475 (531)
..+++++.++++++.+.|++.+++.. +|..+.... .+. ..++.|..+.+ .....+.+.|...++.++.
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~l~~~L~~~GI~v~~ 375 (437)
T 3bb8_A 307 EEFVEKRKANFKYLKDALQSCADFIE--LPEATENSD--------PSWFGFPITLKEDSG-VSRIDLVKFLDEAKVGTRL 375 (437)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTTTEE--CCCCCTTEE--------CCCSSEEEEECGGGS-SCHHHHHHHHHHTTBCCBC
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccc--cCCCCCCCc--------eeeEEEEEEECCcCc-CcHHHHHHHHHHCCCceec
Confidence 78888888889999999988766532 332211000 011 11344443211 1345666777666777776
Q ss_pred CCcccccccCcccc-----ccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 476 GGCESIVDQPAIMS-----YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 476 Gg~~Sli~~p~~~s-----~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
+....+..+|.... ...++..++. ..+.|||+++...+++.++.+.++|.+
T Consensus 376 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~~~~t~~di~~i~~~l~~ 431 (437)
T 3bb8_A 376 LFAGNLTRQPYFHDVKYRVVGELTNTDRI----MNQTFWIGIYPGLTHDHLDYVVSKFEE 431 (437)
T ss_dssp CTTSSGGGSGGGSSCCCEECSCCHHHHHH----HHHEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred cCCcccccCchhhccCccccCCCcHHHHH----hcCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 64322212232100 0112222221 245799999999999999999888864
No 139
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.86 E-value=5.9e-21 Score=199.03 Aligned_cols=265 Identities=15% Similarity=0.152 Sum_probs=176.2
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--cCCCEEEEcCCCccchHH-HHHhhccc---------CCcEEEEeCCCCHHHHHHh
Q 009604 214 GAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRI-FIETVLPK---------MGITATVIDPADMEGLEAA 281 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all--~pGD~VIv~~~~y~~t~~-~~~~~l~~---------~Gi~v~~vd~~d~e~Le~a 281 (531)
+.++++++++|++|+.+++.++. .+||+||+.++.|++.+. .+. .... ....+..++..|+++|+++
T Consensus 103 ~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~-~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~ 181 (395)
T 1vef_A 103 ELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLS-VTWEPKYREPFLPLVEPVEFIPYNDVEALKRA 181 (395)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHH-TCCCHHHHGGGCSCSSCEEEECTTCHHHHHHH
T ss_pred CcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhh-hcCCcccccccCCCCCCeeEeCCCcHHHHHHH
Confidence 35678899999999999998764 678999999998876432 222 1111 1112555666799999999
Q ss_pred ccCCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCcc------ccccccCCcEEEECCcccccc
Q 009604 282 LNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGG 351 (531)
Q Consensus 282 l~~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~~------~~~l~~gaDivv~S~sK~lgg 351 (531)
+++ ++++|++++++||||.+.+ +++|.++|+++|++||+|++|+.... ......+.|++ |++|++++
T Consensus 182 i~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~ 258 (395)
T 1vef_A 182 VDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGG 258 (395)
T ss_dssp CCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT
T ss_pred hcc-CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccC
Confidence 987 4999999888899999988 99999999999999999999873211 12233457876 78999997
Q ss_pred CCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 352 HNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 352 ~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
|. ..|++++++++++.++..........++..++.+...++.+.. ..++..++++.+.+.|++.+. |..
T Consensus 259 -g~-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~- 329 (395)
T 1vef_A 259 -GV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS------PKI- 329 (395)
T ss_dssp -TS-SCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC------TTE-
T ss_pred -CC-ceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc------Cce-
Confidence 43 3577777777766654321112223456666555556655432 345566777778888876532 100
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeE
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLV 508 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lI 508 (531)
....+.|++++|.++++ ..++.+.|. ..++.+..+ .++.|
T Consensus 330 ---------~~~~~~g~~~~~~~~~~---~~~l~~~l~~~~gi~v~~~---------------------------~~~~i 370 (395)
T 1vef_A 330 ---------REVRGMGLMVGLELKEK---AAPYIARLEKEHRVLALQA---------------------------GPTVI 370 (395)
T ss_dssp ---------EEEEEETTEEEEEESSC---SHHHHHHHHHHHCEECEES---------------------------STTEE
T ss_pred ---------EEEEEEEEEEEEEEcCh---HHHHHHHHHHHCCeEEecC---------------------------CCCEE
Confidence 00112467999999743 344555554 444444322 14789
Q ss_pred EEEecCCCHHHHHHHHHHHHHh
Q 009604 509 RFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 509 RlSvGlE~~edli~dL~~AL~~ 530 (531)
||++++..+++.++.+.++|++
T Consensus 371 Ri~~~~~~~~~~i~~~~~~l~~ 392 (395)
T 1vef_A 371 RFLPPLVIEKEDLERVVEAVRA 392 (395)
T ss_dssp EECCCTTCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999887777777777766653
No 140
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.86 E-value=4.4e-20 Score=200.04 Aligned_cols=202 Identities=12% Similarity=0.136 Sum_probs=145.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCC----EEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-------CHHHHHHhcc
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-------DMEGLEAALN 283 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD----~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-------d~e~Le~al~ 283 (531)
.+++++++++++++.+++.+++++|| +|+++.|.|...... +...|.++..++.+ |+++|+++++
T Consensus 153 ~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~----~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~ 228 (498)
T 3ihj_A 153 PDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAV----ISELDAIQVNYYLDEENCWALNVNELRRAVQ 228 (498)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHH----HHHTTCEEEEEECBGGGTTBCCHHHHHHHHH
T ss_pred cccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeeccccccCCCCHHHHHHHHH
Confidence 56788888888999999999999876 999999999876543 34457777766543 8999999987
Q ss_pred CC----CcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcccc-----cc-c----cC------C-c
Q 009604 284 NN----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----AL-S----LG------A-D 339 (531)
Q Consensus 284 ~~----~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~-----~l-~----~g------a-D 339 (531)
+. ++++|++++|+||||.+++ +++|+++|+++|++||+|++|....... .+ . .+ . .
T Consensus 229 ~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 308 (498)
T 3ihj_A 229 EAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVEL 308 (498)
T ss_dssp HHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCE
T ss_pred hhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeE
Confidence 52 3899999999999999986 5678899999999999999987643211 11 0 11 1 3
Q ss_pred EEEECCccccccCCCceEEEEE---eChHHHHHHHHHhhhcCCCchHHHHHHHHHH--------------HHHHHHHHHH
Q 009604 340 LVLHSATKFIGGHNDVLAGSIS---GSGKLVTQIRNLHHVLGGALNPNAAYLIIRG--------------MKTLHLRVQQ 402 (531)
Q Consensus 340 ivv~S~sK~lgg~g~v~gG~iv---~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~--------------L~tl~~r~~~ 402 (531)
++++|+||.+.|..+..+|+++ .++++++.+........ +.+......+... ++.+..+.++
T Consensus 309 i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 387 (498)
T 3ihj_A 309 ASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRL-CPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGN 387 (498)
T ss_dssp EEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHH
T ss_pred EEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHH
Confidence 7889999999542234577777 58888888877655332 2233322222222 2334455566
Q ss_pred HHHHHHHHHHHHHcCCCce
Q 009604 403 QNSTALRMAKILEAHPKVK 421 (531)
Q Consensus 403 ~~~na~~La~~L~~~p~v~ 421 (531)
..++++.+.+.|+++|++.
T Consensus 388 l~~~~~~l~~~L~~~~g~~ 406 (498)
T 3ihj_A 388 LAKKAKLTEDLFNQVPGIH 406 (498)
T ss_dssp HHHHHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHHhcCCCcE
Confidence 7788899999999887653
No 141
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.86 E-value=1.1e-19 Score=191.93 Aligned_cols=287 Identities=15% Similarity=0.136 Sum_probs=187.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHHhccCCCc
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEAALNNNNV 287 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~al~~~~t 287 (531)
+.++++++++|++|+.+++.++. +||+|+++.++|.+.... +...|+++.+++.+ |+++|++++++ ++
T Consensus 66 ~~~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~----~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~ 139 (424)
T 2po3_A 66 GVRHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAATPHA----LRWIGLTPVFADIDPDTGNLDPDQVAAAVTP-RT 139 (424)
T ss_dssp TSSEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTSSBCHHHHGGGCCT-TE
T ss_pred CCCeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCcCCcCHHHHHHhhCc-CC
Confidence 77899999999999999999875 799999999999987643 34468888888643 78999999987 49
Q ss_pred EEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc--cccccCCcEEEECCc--cccccCCCceEEEEEeC
Q 009604 288 SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSAT--KFIGGHNDVLAGSISGS 363 (531)
Q Consensus 288 klV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~--~~l~~gaDivv~S~s--K~lgg~g~v~gG~iv~~ 363 (531)
++|+++ ||+|.+.++++|.++|+++|++||+|++|+.+... .++....|+++.|++ |.++|. .+|+++++
T Consensus 140 ~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~~---~~G~~v~~ 213 (424)
T 2po3_A 140 SAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNAF---EGGAVVTD 213 (424)
T ss_dssp EEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS---SCEEEEES
T ss_pred cEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCCccCC---CCeEEEeC
Confidence 999984 58999999999999999999999999998854322 222223689999998 888763 37899888
Q ss_pred -hHHHHHHHHHhhhc------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCC
Q 009604 364 -GKLVTQIRNLHHVL------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 430 (531)
Q Consensus 364 -~~li~~l~~~~~~~------------G~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s 430 (531)
+++++.++...... ...+++..+++++..++.+....++..++++.+.+.|.+.+++..+..|.- .
T Consensus 214 ~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~ 292 (424)
T 2po3_A 214 DADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRH-G 292 (424)
T ss_dssp CHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGG-S
T ss_pred CHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCC-C
Confidence 78888877644321 113456666666666777777777777888888888877665532110100 0
Q ss_pred CchhhhhhhhcCCcccEEEEEEcC---CHHHHHHHHHHcCCCCcccccCCcccccccCccccc--cCCCHHHHHhcCCCC
Q 009604 431 HPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY--WDLSQSERLKYGIMD 505 (531)
Q Consensus 431 ~p~~~l~~~~~~g~g~ivsf~l~g---~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~--~~~~~~~~~~~gi~~ 505 (531)
.....++.|.++. + .....+.+.|...++.++......+...+..... ...+...|. .+
T Consensus 293 -----------~~~~~~~~i~~~~~~~~-~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~----~~ 356 (424)
T 2po3_A 293 -----------LNNHQYVIVEIDEATTG-IHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERL----AA 356 (424)
T ss_dssp -----------CCCCCCEEEEECHHHHS-SCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHH----HT
T ss_pred -----------ccccEEEEEEECCccch-hhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHH----hc
Confidence 0012466777752 1 1234556666555655543110001000000000 001111111 13
Q ss_pred CeEEEEecCCCHHHHHHHHHHHHH
Q 009604 506 NLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 506 ~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
..||+++....+++.++.+.++|+
T Consensus 357 ~~l~l~~~~~~t~e~i~~~~~~L~ 380 (424)
T 2po3_A 357 RVLSLPTGTAIGDDDIRRVADLLR 380 (424)
T ss_dssp TEEEECCSTTCCHHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHH
Confidence 458887667777777777766665
No 142
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.86 E-value=2.3e-20 Score=197.10 Aligned_cols=272 Identities=11% Similarity=0.067 Sum_probs=174.1
Q ss_pred CCcEEEeCChHHHH--HHHHHHhccC------------CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----CCHH
Q 009604 215 AESTVIMASGMSAS--TVMLLALVPA------------GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADME 276 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai--~~al~all~p------------GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~d~e 276 (531)
++++++++++++++ .+++..+.++ ||+|+++.|+|.+....+ +..|.++..++. .|++
T Consensus 93 ~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~~g~d~~ 168 (422)
T 3d6k_A 93 ADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT----EHFGFEMINVPMTDEGPDMG 168 (422)
T ss_dssp GGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH----HHHTCEEEEEEEETTEECHH
T ss_pred hhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHH----HHcCCEEEecCCCCCCCCHH
Confidence 45666666666886 6666777766 348999999998866444 334777666653 4799
Q ss_pred HHHHhccCCCcEEEE-EeCCCCCCCcccCHH---HHHHHHH-hcCCEEEEeCCCCC-Ccc-----cccc--------ccC
Q 009604 277 GLEAALNNNNVSLFF-TESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFAT-PLN-----QKAL--------SLG 337 (531)
Q Consensus 277 ~Le~al~~~~tklV~-lesP~NPtG~v~dl~---~I~~la~-~~gi~lIvD~a~a~-~~~-----~~~l--------~~g 337 (531)
+|++++++.++++|+ +++|+||||.+++.+ +|.++|+ ++|++||+|++|.. .+. ..++ ..+
T Consensus 169 ~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (422)
T 3d6k_A 169 VVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPN 248 (422)
T ss_dssp HHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT
T ss_pred HHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCC
Confidence 999999753589988 689999999999876 7777787 89999999999963 111 1111 235
Q ss_pred CcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 009604 338 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTALRM 410 (531)
Q Consensus 338 aDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~t-------l~~r~~~~~~na~~L 410 (531)
.++++.|+||. +++|. ..|++++++++++.+.......+...++.....+...++. +....+...++.+.+
T Consensus 249 ~~i~~~S~SK~-~~~Gl-riG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 326 (422)
T 3d6k_A 249 RFWFMSSTSKI-THAGS-GVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERV 326 (422)
T ss_dssp CEEEEEESTTT-SCTTS-SCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcChhhh-cCccc-ceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Confidence 67999999998 44453 4789999999999888766655544555554444444432 222223334456666
Q ss_pred HHHHHcC----CCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCc-ccccccC
Q 009604 411 AKILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGC-ESIVDQP 485 (531)
Q Consensus 411 a~~L~~~----p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~-~Sli~~p 485 (531)
.+.|.++ +.+ .+..|. .|.++++.++.. ....+.+.|+..++.+..|+. +... +
T Consensus 327 ~~~L~~~l~~~~~~-~~~~p~----------------~g~~~~~~~~~~--~~~~~~~~l~~~gV~v~~~g~~f~~~--~ 385 (422)
T 3d6k_A 327 LEILDSRLSEYGVA-KWTSPT----------------GGYFISVDVVPG--TASRVVELAKEAGIALTGAGSSFPLH--N 385 (422)
T ss_dssp HHHHHHHHGGGTCE-EECCCS----------------BSSCEEEEESTT--CHHHHHHHHHHTTEECCCTTTTSGGG--C
T ss_pred HHHHHHhcCcCCce-EEeCCC----------------cceEEEEECCCC--CHHHHHHHHHHCCeEEEcCccccCCC--C
Confidence 6666542 222 222332 356789999753 234555666666777777432 2100 0
Q ss_pred ccccccCCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHH
Q 009604 486 AIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALH 529 (531)
Q Consensus 486 ~~~s~~~~~~~~~~~~gi~~~lIRlSvGl---E~~edli~dL~~AL~ 529 (531)
.-.++.||||++. |+.+..++.|.++++
T Consensus 386 ----------------~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~ 416 (422)
T 3d6k_A 386 ----------------DPNNENIRLAPSLPPVAELEVAMDGFATCVL 416 (422)
T ss_dssp ----------------CTTSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCCCeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 0125789999996 233444555555543
No 143
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-20 Score=203.13 Aligned_cols=263 Identities=11% Similarity=0.083 Sum_probs=183.4
Q ss_pred CcEEEeCChHHHHHHHHHHhcc-----CC---CEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHHHHHh
Q 009604 216 ESTVIMASGMSASTVMLLALVP-----AG---GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEGLEAA 281 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~-----pG---D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~Le~a 281 (531)
+.++++++|++|+.+++.++.+ +| |+|+++.+.|.+.... +...|+++..++.+ |+++|+++
T Consensus 127 ~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~----~~~~G~~~~~v~~~~~~~~~d~~~l~~~ 202 (497)
T 3mc6_A 127 GCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKA----AYYFGMKLRHVELDPTTYQVDLGKVKKF 202 (497)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHH----HHHSCCEEEEECBCTTTCSBCTTTTGGG
T ss_pred CeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHH----HHHcCCeEEEEecCcccCcCCHHHHHHH
Confidence 4788888999999999998865 56 8999999999886543 44458888887643 58999999
Q ss_pred ccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCc-------------cccccccCCcEEEECCccc
Q 009604 282 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-------------NQKALSLGADLVLHSATKF 348 (531)
Q Consensus 282 l~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~-------------~~~~l~~gaDivv~S~sK~ 348 (531)
++++ +++|++++|+||+|.+.|+++|.++|+++|++||+|++|+.+. .......|+|+++.|++|+
T Consensus 203 i~~~-~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~ 281 (497)
T 3mc6_A 203 INKN-TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKY 281 (497)
T ss_dssp CCSS-EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTT
T ss_pred HhhC-CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhh
Confidence 9874 9999999999999999999999999999999999999987321 1233446899999999999
Q ss_pred cccCCCceEEEEEeChHHHHHHHHH-hh-hcCC----------Cch--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 009604 349 IGGHNDVLAGSISGSGKLVTQIRNL-HH-VLGG----------ALN--PNAAYLIIRGM--KTLHLRVQQQNSTALRMAK 412 (531)
Q Consensus 349 lgg~g~v~gG~iv~~~~li~~l~~~-~~-~~G~----------~~s--~~~a~l~l~~L--~tl~~r~~~~~~na~~La~ 412 (531)
++++.+ .|+++.+++.+...... .. ..+. ... ...+|.+++.+ ..+..++++..++++++.+
T Consensus 282 l~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~ 359 (497)
T 3mc6_A 282 GFAPKG--SSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKK 359 (497)
T ss_dssp TCCCSS--CEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCC--ceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 754432 57777766554432111 00 0111 111 22344444443 3345667788889999999
Q ss_pred HHHc-CCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCcccccc
Q 009604 413 ILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW 491 (531)
Q Consensus 413 ~L~~-~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~ 491 (531)
.|++ .|++..+ .+. .++++.|..++ ....++.+.|...++.++.+.
T Consensus 360 ~L~~~~~g~~~~-~~~----------------~~~~v~~~~~~--~~~~~l~~~L~~~Gi~v~~~~-------------- 406 (497)
T 3mc6_A 360 YIQENIPDLDIM-GNP----------------RYSVISFSSKT--LNIHELSDRLSKKGWHFNALQ-------------- 406 (497)
T ss_dssp HHHHSCTTCEEC-SCC----------------CSSEEEEECTT--TTHHHHHHHHHTTTCBCEECC--------------
T ss_pred HHHhcCCCEEEe-cCC----------------CeeEEEEeCCC--CCHHHHHHHHHhCCEEEecCC--------------
Confidence 9998 4776432 221 35688887754 245667777765555443221
Q ss_pred CCCHHHHHhcCCCCCeEEEEec---CCCHHHHHHHHHHHHHh
Q 009604 492 DLSQSERLKYGIMDNLVRFSFG---VEDFEDLKADVLQALHA 530 (531)
Q Consensus 492 ~~~~~~~~~~gi~~~lIRlSvG---lE~~edli~dL~~AL~~ 530 (531)
.+..+|+++. .|+.++++++|.++++.
T Consensus 407 ------------~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 407 ------------KPVALHMAFTRLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp ------------SSCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred ------------CCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 1235788876 46778888888887753
No 144
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.86 E-value=2.3e-20 Score=194.73 Aligned_cols=265 Identities=13% Similarity=0.113 Sum_probs=179.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc-------cCCCEEEEcCCCccchHHH---------HHhhcccCCcEEEEeCCCCHHH
Q 009604 214 GAESTVIMASGMSASTVMLLALV-------PAGGHIVTTTDCYRKTRIF---------IETVLPKMGITATVIDPADMEG 277 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all-------~pGD~VIv~~~~y~~t~~~---------~~~~l~~~Gi~v~~vd~~d~e~ 277 (531)
+.++++++++|++|+..++..+. .++|+|++.++.|++.... +...+...+..+..++..|+++
T Consensus 92 ~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 171 (395)
T 3nx3_A 92 ALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISS 171 (395)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHH
Confidence 67889999999999999998765 3579999999999775321 2222334455677788889999
Q ss_pred HHHhccCCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCC------ccccccccCCcEEEECCcc
Q 009604 278 LEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATK 347 (531)
Q Consensus 278 Le~al~~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~------~~~~~l~~gaDivv~S~sK 347 (531)
|++++++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|... ..........|++ +++|
T Consensus 172 l~~~l~~-~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK 248 (395)
T 3nx3_A 172 VEKLVNE-KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAK 248 (395)
T ss_dssp HHTTCCT-TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECG
T ss_pred HHHhccC-CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--Eecc
Confidence 9999987 4999999999999999887 999999999999999999997632 1122233345665 4679
Q ss_pred ccccCCCceEEEEEeChHH-HHHHHHHhhhcCCCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHc----CCCc
Q 009604 348 FIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA----HPKV 420 (531)
Q Consensus 348 ~lgg~g~v~gG~iv~~~~l-i~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~La~~L~~----~p~v 420 (531)
.+++ | ...|++++++++ ++.++..........++..+..+...++.+. ...++..++.+++.+.|.+ +|.+
T Consensus 249 ~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (395)
T 3nx3_A 249 ALGC-G-LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFC 326 (395)
T ss_dssp GGTT-T-SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred cccC-C-CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 9986 4 357888899888 7776543222223445666666556665442 2344444555555555543 3432
Q ss_pred eEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHh
Q 009604 421 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK 500 (531)
Q Consensus 421 ~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~ 500 (531)
..+ .+.|++++|++++. .....+.+.|...++.++.|
T Consensus 327 ~~~------------------~~~g~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~------------------------ 363 (395)
T 3nx3_A 327 KKR------------------KGLGFMQGLSLDKS-VKVAKVIQKCQENALLLISC------------------------ 363 (395)
T ss_dssp EEE------------------EEETTEEEEEECTT-SCHHHHHHHHHHTTEECEEE------------------------
T ss_pred EEE------------------EeEEEEEEEEeCCc-chHHHHHHHHHHCCCEEecC------------------------
Confidence 211 23578999999753 24566777775545444332
Q ss_pred cCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 501 YGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 501 ~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
.++.|||++++..+++.++.+.++|+
T Consensus 364 ---~~~~iRi~~~~~~t~e~i~~~l~~l~ 389 (395)
T 3nx3_A 364 ---GENDLRFLPPLILQKEHIDEMSEKLR 389 (395)
T ss_dssp ---TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ---CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 14789999887666555555555544
No 145
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.85 E-value=1.9e-20 Score=195.32 Aligned_cols=271 Identities=14% Similarity=0.066 Sum_probs=178.2
Q ss_pred EEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCc--EEEEeC------CCCHHHHHHhccCCCcEE
Q 009604 218 TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVID------PADMEGLEAALNNNNVSL 289 (531)
Q Consensus 218 ~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi--~v~~vd------~~d~e~Le~al~~~~tkl 289 (531)
.+++++|++|+.+++.+++++||+|+++.+.|++..... ..+...|. ....++ ..|+++|++++++.++++
T Consensus 88 ~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 166 (407)
T 2dkj_A 88 NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKV 166 (407)
T ss_dssp ECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSE
T ss_pred eEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeE
Confidence 477899999999999999999999999999998753111 11222233 333342 247999999997424899
Q ss_pred EEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccccCCcEEEECCccccccCCCceEEEEEeC-
Q 009604 290 FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGS- 363 (531)
Q Consensus 290 V~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~- 363 (531)
|++++|+|| .+.|+++|.++|+++|++||+|++|+.+.. ..+.. ..|+++.|+||+++|.. +|+++++
T Consensus 167 v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~---~G~~~~~~ 240 (407)
T 2dkj_A 167 IVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTLRGPR---GGLILSND 240 (407)
T ss_dssp EEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGGCCCS---CEEEEESC
T ss_pred EEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEeccccCCCCC---ceEEEECC
Confidence 999999997 678999999999999999999999875321 11122 37999999999887653 6999998
Q ss_pred hHHHHHHHHHhhhcC-CCchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhh
Q 009604 364 GKLVTQIRNLHHVLG-GALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIA 437 (531)
Q Consensus 364 ~~li~~l~~~~~~~G-~~~s~~~a~l~l~~L-----~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~ 437 (531)
+++++.++.....+. ...++.....+...+ +.+....++..++++.+.+.|+++ ++. +..+
T Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------- 307 (407)
T 2dkj_A 241 PELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYR-IVTG----------- 307 (407)
T ss_dssp HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-EGGG-----------
T ss_pred HHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-Cce-eecC-----------
Confidence 788888876543222 223332221222222 234556667778888888999876 442 2211
Q ss_pred hhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEec----
Q 009604 438 TQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG---- 513 (531)
Q Consensus 438 ~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvG---- 513 (531)
.+.+++++|.++........+.+.|...++.+..|.... |.. . . ..++.+|||++
T Consensus 308 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~---------~~~-~------~-~~~~~iRis~~~~~~ 366 (407)
T 2dkj_A 308 ----GTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPF---------DPK-P------P-RVTSGIRIGTPAITT 366 (407)
T ss_dssp ----SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTT---------CSS-C------T-TTCSEEEEECHHHHH
T ss_pred ----CCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCcc---------ccc-c------c-cCCCceeeecccccc
Confidence 014678899886311134456666655677666654210 000 0 0 12468999995
Q ss_pred ----CCCHHHHHHHHHHHHH
Q 009604 514 ----VEDFEDLKADVLQALH 529 (531)
Q Consensus 514 ----lE~~edli~dL~~AL~ 529 (531)
.|+.+.+++.|.++++
T Consensus 367 ~~~~~~~i~~~~~~l~~~~~ 386 (407)
T 2dkj_A 367 RGFTPEEMPLVAELIDRALL 386 (407)
T ss_dssp TTCCGGGHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHh
Confidence 3456677777776664
No 146
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.85 E-value=4.7e-20 Score=188.29 Aligned_cols=246 Identities=13% Similarity=0.156 Sum_probs=171.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCcEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSL 289 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~~tkl 289 (531)
.++++++++|++++.+++.++ ||+|+++ +.|.+....+ +..|+++..++.+ |+++| + ++++
T Consensus 76 ~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l-----~-~~~~ 141 (335)
T 1uu1_A 76 KNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFA----KAVGAKFLEVPLTKDLRIPEVNV-----G-EGDV 141 (335)
T ss_dssp GGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHH----HHHTCEEEECCCCTTSCCCCCCC-----C-TTEE
T ss_pred HHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHH----HHcCCeEEEeccCCCCCCCHHHc-----C-CCCE
Confidence 457788888889999999887 8999999 9998865433 4457888777643 33433 4 4899
Q ss_pred EEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc---cc-ccccCCcEEEECCccccccCCCceEEEEEeChH
Q 009604 290 FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QK-ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 365 (531)
Q Consensus 290 V~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~---~~-~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~ 365 (531)
|++++|+||||.+.+.+++.++++..| ++|+|++|..... .. ....+.++++.|+||.++.+| ...|+++++++
T Consensus 142 v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~ 219 (335)
T 1uu1_A 142 VFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAA-QRVGYVVASEK 219 (335)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGG-GCCEEEEECHH
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcc-cCeEEEEeCHH
Confidence 999999999999999999999999889 9999999864211 11 112456899999999998555 34688888999
Q ss_pred HHHHHHHHhhhcCCCchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcC
Q 009604 366 LVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT 442 (531)
Q Consensus 366 li~~l~~~~~~~G~~~s~~~a~l~l~~L~---tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~ 442 (531)
+++.++.....+ +.++...+.+...++ .+..+.++..++++.+.+.|+++ ++. + +|.
T Consensus 220 ~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~--------------- 279 (335)
T 1uu1_A 220 FIDAYNRVRLPF--NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYR-I-TDS--------------- 279 (335)
T ss_dssp HHHHHHHHSCTT--CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CCC---------------
T ss_pred HHHHHHHhcCCC--CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcE-E-cCC---------------
Confidence 988887655433 344554444444443 34455666777888888888875 332 2 222
Q ss_pred CcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHH
Q 009604 443 GFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKA 522 (531)
Q Consensus 443 g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~ 522 (531)
.|+++++.+++ ....+|.+.|...++.++. .++.+|||++.+ +.++
T Consensus 280 -~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~----------------------------~~~~iRis~~~~---~~i~ 325 (335)
T 1uu1_A 280 -RGNFVFVFMEK--EEKERLLEHLRTKNVAVRS----------------------------FREGVRITIGKR---EEND 325 (335)
T ss_dssp -CSSEEEEECCT--HHHHHHHHHHHHHTEEEEE----------------------------ETTEEEEECCCH---HHHH
T ss_pred -CCeEEEEECCC--CCHHHHHHHHHHCCEEEEE----------------------------CCCeEEEEeCCH---HHHH
Confidence 35678888864 3455677766544443322 146899999852 3477
Q ss_pred HHHHHHHh
Q 009604 523 DVLQALHA 530 (531)
Q Consensus 523 dL~~AL~~ 530 (531)
.+.++|++
T Consensus 326 ~~~~~l~~ 333 (335)
T 1uu1_A 326 MILRELEV 333 (335)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 77777764
No 147
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.85 E-value=3.2e-20 Score=189.57 Aligned_cols=262 Identities=13% Similarity=0.070 Sum_probs=173.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC----CHHHHHHhccCC-----
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----DMEGLEAALNNN----- 285 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~----d~e~Le~al~~~----- 285 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... ..++..|+++..++.+ |+++|+++++++
T Consensus 66 ~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~ 143 (359)
T 1svv_A 66 DADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHET--GAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHM 143 (359)
T ss_dssp TSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSST--THHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTS
T ss_pred CccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHH--HHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccC
Confidence 34688888999999999999999999999999999876431 0234568888888754 589999998763
Q ss_pred -CcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCC---CCC---cccccc--ccCCcEEEECCccccccCC
Q 009604 286 -NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF---ATP---LNQKAL--SLGADLVLHSATKFIGGHN 353 (531)
Q Consensus 286 -~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~---a~~---~~~~~l--~~gaDivv~S~sK~lgg~g 353 (531)
++++|++++| ||+|.+.+ +++|.++|+++|+++|+|+++ ..+ ...... ..+.|+++.|++|+.++.+
T Consensus 144 ~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~ 222 (359)
T 1svv_A 144 VIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFG 222 (359)
T ss_dssp CEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSC
T ss_pred CCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCc
Confidence 2899999999 79999998 889999999999999999998 211 111211 1358999999999854433
Q ss_pred CceEEEEEeChHHHHHHHHHhhhcCCCc--hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 354 DVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGM--KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 354 ~v~gG~iv~~~~li~~l~~~~~~~G~~~--s~~~a~l~l~~L--~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
.|+++.++++++.++......+... +......+...+ ..+....++..++++.+.+.| +.+++. +..|.
T Consensus 223 ---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~-~~~~~-- 295 (359)
T 1svv_A 223 ---EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EACGIR-LAWPS-- 295 (359)
T ss_dssp ---EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCC-BSSCC--
T ss_pred ---eEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeE-EccCC--
Confidence 5888888888776665432222211 111111111112 123344566667788888888 445442 11121
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-CcccccCCcccccccCccccccCCCHHHHHhcCCCCCeE
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLV 508 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~-~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lI 508 (531)
.++++++.++ .++.+.|... ++.+ +|.. + ..++.|
T Consensus 296 --------------~~~~~~~~~~------~~~~~~l~~~~gi~v-~~~~------~-----------------~~~~~i 331 (359)
T 1svv_A 296 --------------ASNQLFPILE------NTMIAELNNDFDMYT-VEPL------K-----------------DGTCIM 331 (359)
T ss_dssp --------------SSSEECBEEE------HHHHHHHTTTEECEE-EEEE------T-----------------TTEEEE
T ss_pred --------------ccceEEEEcC------HHHHHHHHHhcCEEE-Eecc------c-----------------CCCceE
Confidence 2456667664 2566666544 5444 1100 0 124689
Q ss_pred EEEecCCCHHHHHHHHHHHHHh
Q 009604 509 RFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 509 RlSvGlE~~edli~dL~~AL~~ 530 (531)
||++++..+++.++.+.++|++
T Consensus 332 Ri~~~~~~~~~~i~~~~~~l~~ 353 (359)
T 1svv_A 332 RLCTSWATEEKECHRFVEVLKR 353 (359)
T ss_dssp EEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEccCcCCHHHHHHHHHHHHH
Confidence 9999987777777777777654
No 148
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.85 E-value=1.4e-20 Score=199.83 Aligned_cols=267 Identities=12% Similarity=0.053 Sum_probs=167.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE----------EEEeCCCCHHHHHHhccC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT----------ATVIDPADMEGLEAALNN 284 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~----------v~~vd~~d~e~Le~al~~ 284 (531)
.++++++++|++++.++ .+++++||+|+++.++|.+....+.. .|.+ +..++.++.+.+...+.+
T Consensus 132 ~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~----~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (449)
T 3qgu_A 132 ADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVM----MGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSK 206 (449)
T ss_dssp GGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHH----HTCSCCBCSSSBTTEEEEECCGGGTTCCCGGG
T ss_pred HHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHH----cCCcccccccccceeEEEecccccCCcCChhH
Confidence 45777777778999988 88899999999999999987655432 2444 555554322122111111
Q ss_pred -CCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc-----cccc----cCCcEEEECCcccccc
Q 009604 285 -NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS----LGADLVLHSATKFIGG 351 (531)
Q Consensus 285 -~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~-----~~l~----~gaDivv~S~sK~lgg 351 (531)
.++++|++++|+||||.+++ +++|+++|+++|++||+|++|...... .... .+.++++.|++|.+|.
T Consensus 207 ~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 286 (449)
T 3qgu_A 207 AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGF 286 (449)
T ss_dssp CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTC
T ss_pred cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCC
Confidence 24899999999999999986 778888899999999999998753211 1111 2467999999999985
Q ss_pred CCCceEEEEEeChHHHH--------HHHHHhhhcCCCchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCC
Q 009604 352 HNDVLAGSISGSGKLVT--------QIRNLHHVLGGALNPNAAYLIIRG-----MKTLHLRVQQQNSTALRMAKILEAHP 418 (531)
Q Consensus 352 ~g~v~gG~iv~~~~li~--------~l~~~~~~~G~~~s~~~a~l~l~~-----L~tl~~r~~~~~~na~~La~~L~~~p 418 (531)
.|. ..|++++++++++ .+...........++.....+... .+.+....++..++++.+.+.|+++
T Consensus 287 ~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 364 (449)
T 3qgu_A 287 TGV-RLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM- 364 (449)
T ss_dssp TTC-CCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ccc-eeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 554 3688888877654 333333222223444443333322 2345555666778888899999876
Q ss_pred CceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHH
Q 009604 419 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSE 497 (531)
Q Consensus 419 ~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~ 497 (531)
++. +..|. .|.++++.+++ ....++.+.|. ..++.+..|..+..
T Consensus 365 g~~-~~~~~----------------~~~~~~~~~~~--~~~~~~~~~l~~~~gI~v~pg~~f~~---------------- 409 (449)
T 3qgu_A 365 GFS-VYGGD----------------DAPYIWVGFPG--KPSWDVFAEILERCNIVTTPGSGYGP---------------- 409 (449)
T ss_dssp TCC-EEESS----------------SSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCG----------------
T ss_pred CCe-eeCCC----------------CeeEEEEECCC--CCHHHHHHHHHHHCCEEEecchHhCC----------------
Confidence 332 11111 35688888862 22344554442 23666666644321
Q ss_pred HHhcCCCCCeEEEEecC--CCHHHHHHHHHHHH
Q 009604 498 RLKYGIMDNLVRFSFGV--EDFEDLKADVLQAL 528 (531)
Q Consensus 498 ~~~~gi~~~lIRlSvGl--E~~edli~dL~~AL 528 (531)
..++.||||+.. |+.++.++.|.+++
T Consensus 410 -----~~~~~iRis~~~~~e~i~~~l~~l~~~~ 437 (449)
T 3qgu_A 410 -----AGEGFVRASAFGSRENILEAVRRFKEAY 437 (449)
T ss_dssp -----GGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred -----CCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 025799999765 22333444444444
No 149
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.85 E-value=8.8e-20 Score=190.51 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=133.2
Q ss_pred CCcEEE--eCChHHHHHHHHHHhc---cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-------CHHHHHHhc
Q 009604 215 AESTVI--MASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-------DMEGLEAAL 282 (531)
Q Consensus 215 ~e~~i~--~sSG~~Ai~~al~all---~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-------d~e~Le~al 282 (531)
++++++ +++|++|+.+++..+. ++||+|+++.|+|.+....+ +..|.++..++.. |++++++.+
T Consensus 94 ~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 169 (401)
T 7aat_A 94 SGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIF----RDAGLQLQAYRYYDPKTCSLDFTGAMEDI 169 (401)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHH----HHTTCEEEEEECEETTTTEECHHHHHHHH
T ss_pred cCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHH----HHcCCeeEeeeeeccccCccCHHHHHHHH
Confidence 567765 7777899998876654 89999999999999876544 3457777666532 677666666
Q ss_pred cC--CCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccccc-----------cccCCcEEEECCc
Q 009604 283 NN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA-----------LSLGADLVLHSAT 346 (531)
Q Consensus 283 ~~--~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~~-----------l~~gaDivv~S~s 346 (531)
++ .++++|++++|+||||.+++ +++|+++|+++|+++|+|++|........ ......+++.|+|
T Consensus 170 ~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~s 249 (401)
T 7aat_A 170 SKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYA 249 (401)
T ss_dssp TTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECT
T ss_pred HhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCC
Confidence 42 24899999999999998876 67888899999999999999875432210 1123568999999
Q ss_pred cccccCCCceEEEEEe---ChH----HHHHHHHHhhhcCCCchHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 009604 347 KFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRG----------MKTLHLRVQQQNSTALR 409 (531)
Q Consensus 347 K~lgg~g~v~gG~iv~---~~~----li~~l~~~~~~~G~~~s~~~a~l~l~~----------L~tl~~r~~~~~~na~~ 409 (531)
|.++.+|.++ |+++. +++ +.+.++..........+...+..+... .+.+....++..++++.
T Consensus 250 K~~~~~G~Ri-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 328 (401)
T 7aat_A 250 KNMGLYGERA-GAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQ 328 (401)
T ss_dssp TTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCce-EEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887664 55443 555 334444433332223333333332222 22344444556677788
Q ss_pred HHHHHHcC
Q 009604 410 MAKILEAH 417 (531)
Q Consensus 410 La~~L~~~ 417 (531)
+.+.|+++
T Consensus 329 l~~~L~~~ 336 (401)
T 7aat_A 329 LVSNLKKE 336 (401)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 88888765
No 150
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.85 E-value=5.3e-20 Score=191.73 Aligned_cols=272 Identities=15% Similarity=0.127 Sum_probs=173.4
Q ss_pred cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCC--cEEEEeC--------------CCCHHHHHH
Q 009604 217 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVID--------------PADMEGLEA 280 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~G--i~v~~vd--------------~~d~e~Le~ 280 (531)
.+++++||++|+.+++. ++++||+|++..+.|.+.. +...++..| .++.+++ ..|+++|++
T Consensus 53 ~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~ 129 (379)
T 3ke3_A 53 AVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVA 129 (379)
T ss_dssp EEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHH
T ss_pred EEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHH
Confidence 45566799999999875 4579999999999887643 222333334 3555543 358999999
Q ss_pred hccCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceE
Q 009604 281 ALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLA 357 (531)
Q Consensus 281 al~~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~g 357 (531)
++++.++++|++.+++|++|.+.| +++|.++|+++|+++|+|++++.........+|+|+++.|++|+++++.+ +
T Consensus 130 ~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~g--~ 207 (379)
T 3ke3_A 130 KIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGCVWLDMKELGIDVLISAPQKGWSSTPC--A 207 (379)
T ss_dssp HHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTCTTCCCCHHHHTCSEEEECTTTTTCSCCC--E
T ss_pred HHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecccCCccccccccCCCEEEecchhhcCCCCc--e
Confidence 995324899999999999999999 99999999999999999999872233444456899999999999987643 6
Q ss_pred EEEEeChHHHHHHHHHh-----------------hhcC-----CCchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 009604 358 GSISGSGKLVTQIRNLH-----------------HVLG-----GALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRM 410 (531)
Q Consensus 358 G~iv~~~~li~~l~~~~-----------------~~~G-----~~~s~~~a~l~l~~L~tl-----~~r~~~~~~na~~L 410 (531)
|+++.++++++.+.... ...| .+.++...+.+..+++.+ ..+.++..++++.+
T Consensus 208 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l 287 (379)
T 3ke3_A 208 GLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRV 287 (379)
T ss_dssp EEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 89999998887765310 0011 244444444333444433 34445556777778
Q ss_pred HHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccc
Q 009604 411 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 490 (531)
Q Consensus 411 a~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~ 490 (531)
.+.|++. ++.. ..+. .+ ..+.+..+.+++ . .. .+.+.|+..++.++.|..++. ..|
T Consensus 288 ~~~l~~~-g~~~-~~~~-----~~--------~~~~i~~~~~~~-~-~~-~~~~~L~~~Gi~v~~g~~~~~-~~~----- 343 (379)
T 3ke3_A 288 RKVLTDK-GIES-VAAE-----GF--------EAPGVVVSYTER-D-DM-HKGSAFAEAGLQIAAGVPLKV-GEP----- 343 (379)
T ss_dssp HHHHHHT-TCCB-SBCT-----TC--------BCSSEEEEECSC-H-HH-HSSHHHHHTTCCCEECCCCSS-CCC-----
T ss_pred HHHHHHc-CCEe-cCCc-----cc--------cCceEEEEccCC-c-ch-HHHHHHHHCCeEEeCCccccc-ccc-----
Confidence 8888775 3221 1110 00 123455565543 2 22 123444445666666533211 000
Q ss_pred cCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHH
Q 009604 491 WDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH 529 (531)
Q Consensus 491 ~~~~~~~~~~~gi~~~lIRlSvGlE----~~edli~dL~~AL~ 529 (531)
...+.||||+... +.+.+++.|.++++
T Consensus 344 ------------~~~~~lRis~~~~~t~~di~~~~~~l~~~l~ 374 (379)
T 3ke3_A 344 ------------DNFKTFRLGLFGLDKLTDIDGTVERFEKALD 374 (379)
T ss_dssp ------------TTCCEEEEECCSHHHHTCHHHHHHHHHHHHH
T ss_pred ------------CcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence 1257899999764 45555555555554
No 151
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.85 E-value=6.4e-20 Score=195.70 Aligned_cols=272 Identities=12% Similarity=-0.043 Sum_probs=179.0
Q ss_pred cEEEeCChHHHHHHHHHHhcc--------CC-----CEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC------CHHH
Q 009604 217 STVIMASGMSASTVMLLALVP--------AG-----GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------DMEG 277 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~--------pG-----D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~------d~e~ 277 (531)
.++++++|++|+.+++.++.. +| ++|+++. .|.... ..+...|++++.++.+ |+++
T Consensus 105 ~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~----~~~~~~G~~v~~v~~~~~~~~~d~~~ 179 (452)
T 2dgk_A 105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWH----KFARYWDVELREIPMRPGQLFMDPKR 179 (452)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHH----HHHHHTTCEEEECCCBTTBCSCCHHH
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHH----HHHHHcCceEEEEecCCCCCeECHHH
Confidence 378888999999999888754 56 5999998 776544 3445568898888753 7999
Q ss_pred HHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhc------CCEEEEeCCCCCCcc---cc--cc---ccCCcEEEE
Q 009604 278 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPLN---QK--AL---SLGADLVLH 343 (531)
Q Consensus 278 Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~------gi~lIvD~a~a~~~~---~~--~l---~~gaDivv~ 343 (531)
|+++|+++ |++|++++|+||||.+.|+++|.++|+++ |+++++|++|+.+.. .. +. ..++|+++.
T Consensus 180 l~~~i~~~-t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 258 (452)
T 2dgk_A 180 MIEACDEN-TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISA 258 (452)
T ss_dssp HHHHCCTT-EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEE
T ss_pred HHHHHhhC-CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEE
Confidence 99999884 99999999999999999999999999995 999999999976432 11 11 237899999
Q ss_pred CCccccccCCCceEEEEEeCh-HHH-HHHHHHhhhcC----------CCc--hHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 009604 344 SATKFIGGHNDVLAGSISGSG-KLV-TQIRNLHHVLG----------GAL--NPNAAYLIIR--GMKTLHLRVQQQNSTA 407 (531)
Q Consensus 344 S~sK~lgg~g~v~gG~iv~~~-~li-~~l~~~~~~~G----------~~~--s~~~a~l~l~--~L~tl~~r~~~~~~na 407 (531)
|+||++.++.+ .|+++.++ +++ +.+.......+ ... .....|.+++ +.+.+..++++..+++
T Consensus 259 ~~hK~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a 336 (452)
T 2dgk_A 259 SGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 336 (452)
T ss_dssp ETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCC--eEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99998755443 57777754 333 33311011111 111 2233444443 3355667788888999
Q ss_pred HHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCH---HHHHHHHHHcCCCCcccccCCccccccc
Q 009604 408 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL---TATIKFIDALKIPYIAPSFGGCESIVDQ 484 (531)
Q Consensus 408 ~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~---~~~~~fl~~L~~~~iavS~Gg~~Sli~~ 484 (531)
+++.+.|++.++++.+ .|+.+. ...+++.|.+++.. ....++.+.|...++.++. + ..
T Consensus 337 ~~l~~~L~~~~~~~~~-~~~~~~------------~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~--~----~~ 397 (452)
T 2dgk_A 337 AYLADEIAKLGPYEFI-CTGRPD------------EGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPA--F----TL 397 (452)
T ss_dssp HHHHHHHHTTSSEEEE-EECCTT------------TBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCE--E----EC
T ss_pred HHHHHHHHhCCCeEEe-cCCCCC------------CCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeee--e----eC
Confidence 9999999988776433 332110 13578999987421 1235666776544443321 1 11
Q ss_pred CccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 485 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 485 p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
|... -..+.+|+|++..++++.++.|.++|+
T Consensus 398 ~~~~--------------~~~~~lRis~~~~~t~e~id~li~~l~ 428 (452)
T 2dgk_A 398 GGEA--------------TDIVVMRIMCRRGFEMDFAELLLEDYK 428 (452)
T ss_dssp STTC--------------TTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred Cccc--------------CCeEEEEEEecCCCCHHHHHHHHHHHH
Confidence 1110 024689999997655555555555543
No 152
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.84 E-value=2.7e-19 Score=187.18 Aligned_cols=288 Identities=13% Similarity=0.073 Sum_probs=195.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-----CCHHHHHHhccCC--
Q 009604 214 GAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNN-- 285 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al-l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-----~d~e~Le~al~~~-- 285 (531)
+.++++++++|++|+.+++.++ +++||+|+++.+.|.++...+. ..|+++.+++. .|+++|++++++.
T Consensus 46 ~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~ 121 (394)
T 1o69_A 46 KSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPIC----YLKAKPVFIDCDETYNIDVDLLKLAIKECEK 121 (394)
T ss_dssp CCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHH----HTTCEEEEECBCTTSSBCHHHHHHHHHHCSS
T ss_pred CCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH----HcCCEEEEEEeCCCCCcCHHHHHHHHhcccC
Confidence 5578999999999999999999 9999999999999999765443 35888888874 3789999998752
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcccccc---c-cCCcEEEECCccccccCCCceEEEEE
Q 009604 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL---S-LGADLVLHSATKFIGGHNDVLAGSIS 361 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l---~-~gaDivv~S~sK~lgg~g~v~gG~iv 361 (531)
++++|++++ |+|...|+++|.++|+++|++||+|++|+.+...... . .++|+..+|.+|.++|.+ +|+++
T Consensus 122 ~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~---~G~~~ 195 (394)
T 1o69_A 122 KPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSG---GGMLI 195 (394)
T ss_dssp CCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSS---CEEEE
T ss_pred CceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCC---ceEEE
Confidence 389999975 7899999999999999999999999999854322111 1 235677777799998654 78998
Q ss_pred eC-hHHHHHHHHHhhhcC--------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCC
Q 009604 362 GS-GKLVTQIRNLHHVLG--------------GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYP 426 (531)
Q Consensus 362 ~~-~~li~~l~~~~~~~G--------------~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~p 426 (531)
++ +++++.++....... ..+++..+.+++..++.+..++++..++++.+.+.|++. + .+ ++
T Consensus 196 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~--~-~~-~~ 271 (394)
T 1o69_A 196 GKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY--F-SF-LD 271 (394)
T ss_dssp ESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT--E-EC-CC
T ss_pred ECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c-cc-cC
Confidence 85 788888876532110 003455666655557777778888889999999999865 2 22 22
Q ss_pred CCCCCchhhhhhhhcCCcccEEEEEEcCCH--------------------HHHHHHHHHcCCCCcccccCCcccccccCc
Q 009604 427 GLKSHPEHHIATQQMTGFGGVVSFEVDGDL--------------------TATIKFIDALKIPYIAPSFGGCESIVDQPA 486 (531)
Q Consensus 427 gl~s~p~~~l~~~~~~g~g~ivsf~l~g~~--------------------~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~ 486 (531)
. .... .....++.|.++.+. .....+.+.|...++.++.|..+. .+.|.
T Consensus 272 ~-~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~-~~~p~ 340 (394)
T 1o69_A 272 E-LENS---------RSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAM-HTQEV 340 (394)
T ss_dssp C-CTTE---------ECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCG-GGCGG
T ss_pred C-CCCC---------cceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCcc-ccchh
Confidence 1 1000 001125677776321 245677777776788887775321 11221
Q ss_pred cccc--cCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 487 IMSY--WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 487 ~~s~--~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.... ..++-.+. +....+|+..+...+++.++.+.++|++
T Consensus 341 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~t~edi~~~~~~l~~ 382 (394)
T 1o69_A 341 FKGAKAYLNGNSEL----FFQKGICLPSGTAMSKDDVYEISKLILK 382 (394)
T ss_dssp GTTCEEEECSHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred hhccCCCCChHHHH----HhcCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 1100 01111111 1124567777888888888888888864
No 153
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.84 E-value=1.2e-19 Score=189.80 Aligned_cols=236 Identities=17% Similarity=0.101 Sum_probs=148.0
Q ss_pred EEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHh-hcccCCcEEEEeCC-----CCHHHHHHhccCCCcEEEE
Q 009604 218 TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFF 291 (531)
Q Consensus 218 ~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~-~l~~~Gi~v~~vd~-----~d~e~Le~al~~~~tklV~ 291 (531)
.|++++|++|+.+++.+++++||+|+++.++|.+....... .....++.+..++. .|+++|++++++.++++|+
T Consensus 90 ~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~ 169 (417)
T 3n0l_A 90 NVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIV 169 (417)
T ss_dssp ECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEE
T ss_pred ceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEE
Confidence 47889999999999999999999999999999775431111 11123444444443 4899999999732489999
Q ss_pred EeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccccCCcEEEECCccccccCCCceEEEEEeC-hH
Q 009604 292 TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GK 365 (531)
Q Consensus 292 lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~-~~ 365 (531)
+++|+| |.+.|+++|.++|+++|++||+|+++..+.. ...+. ++|+++.|+||.++|.. +|+++++ ++
T Consensus 170 ~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~---~G~~~~~~~~ 243 (417)
T 3n0l_A 170 CGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLRGPR---GGIIMTNDEE 243 (417)
T ss_dssp ECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTCSCS---CEEEEESCHH
T ss_pred ECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccCCCC---eeEEEECCHH
Confidence 888876 8899999999999999999999999654322 11222 47999999999996653 6999888 68
Q ss_pred HHHHHHHHhhhc--CCCchHHHHHH--HHHH-H-HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhh
Q 009604 366 LVTQIRNLHHVL--GGALNPNAAYL--IIRG-M-KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 439 (531)
Q Consensus 366 li~~l~~~~~~~--G~~~s~~~a~l--~l~~-L-~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~ 439 (531)
+.+.++...... ++......+.+ ++.. + +.+..+.++..++++.+.+.|.+ .++. +..++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~-~~~~~------------ 309 (417)
T 3n0l_A 244 LAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFK-LVSDG------------ 309 (417)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE-EGGGS------------
T ss_pred HHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCce-eccCC------------
Confidence 888776654321 12122211111 1111 1 34456667777888899999987 3432 11111
Q ss_pred hcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccC
Q 009604 440 QMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG 476 (531)
Q Consensus 440 ~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~G 476 (531)
..++++.+.+.+.......+.+.|+..++.++.+
T Consensus 310 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 343 (417)
T 3n0l_A 310 ---TDNHLVLMSFLDREFSGKDADLALGNAGITANKN 343 (417)
T ss_dssp ---CSSSEEEEECTTSSSCHHHHHHHHHHTTEECEEC
T ss_pred ---CCceEEEEEcccCCCCHHHHHHHHHHcCeEEecc
Confidence 1345777877532112334444444446555543
No 154
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.84 E-value=5.7e-20 Score=200.85 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=112.2
Q ss_pred CcEEEeCChHHHHHHHHHH-----hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---------CHHHHHHh
Q 009604 216 ESTVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---------DMEGLEAA 281 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~a-----ll~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---------d~e~Le~a 281 (531)
++++++++|++|+.+++.+ ++++||+|+++.++|.+.. ..+...|.++..++.. |+++|+++
T Consensus 165 ~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~ 240 (533)
T 3f6t_A 165 TDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYL----RIPELKDYELVEVDLHSYEKNDWEIEPNEIEKL 240 (533)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHH----TSGGGGGSEEEEECCCEETTTTSEECHHHHHHH
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHH----HHHHHcCCeEEEEEecCCcccCCCCCHHHHHHH
Confidence 4667777777999999998 7899999999999998754 3445557777766542 78999999
Q ss_pred ccCCCcEEEEEeCCCCCCCcccCHH---HHHHHHH-hcCCEEEEeCCCCCCccc--cc--cccCCcEEEECCccccccCC
Q 009604 282 LNNNNVSLFFTESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFATPLNQ--KA--LSLGADLVLHSATKFIGGHN 353 (531)
Q Consensus 282 l~~~~tklV~lesP~NPtG~v~dl~---~I~~la~-~~gi~lIvD~a~a~~~~~--~~--l~~gaDivv~S~sK~lgg~g 353 (531)
+++ ++++|++++|+||||.+++.+ +|+++|+ ++|+++|+|++|+..... .. ...+.++++.|+||.+|.+|
T Consensus 241 l~~-~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 319 (533)
T 3f6t_A 241 KDP-SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTG 319 (533)
T ss_dssp SCT-TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGG
T ss_pred hCC-CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcc
Confidence 987 499999999999999999866 7778888 689999999998753321 11 11235699999999998776
Q ss_pred CceEEEEEeChH
Q 009604 354 DVLAGSISGSGK 365 (531)
Q Consensus 354 ~v~gG~iv~~~~ 365 (531)
.+ .|+++++++
T Consensus 320 ~R-iG~l~~~~~ 330 (533)
T 3f6t_A 320 WR-LGVIALNEK 330 (533)
T ss_dssp GC-EEEEEEESS
T ss_pred cc-eEEEEECcH
Confidence 55 567776554
No 155
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.83 E-value=4.3e-20 Score=192.77 Aligned_cols=269 Identities=12% Similarity=0.092 Sum_probs=171.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc------C-CCEEEEcCCCccchHH-HHHhhcccC----C-----cEEEEeCCCCHH
Q 009604 214 GAESTVIMASGMSASTVMLLALVP------A-GGHIVTTTDCYRKTRI-FIETVLPKM----G-----ITATVIDPADME 276 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~------p-GD~VIv~~~~y~~t~~-~~~~~l~~~----G-----i~v~~vd~~d~e 276 (531)
|.++++++++|++|+.+++.++.. + +|+|++.++.|++... .+. ..... + ..+..++..|++
T Consensus 96 g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~-~~g~~~~~~~~~p~~~~~~~~~~~d~~ 174 (397)
T 2ord_A 96 FGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLT-ATGQPKYQKPFEPLVPGFEYFEFNNVE 174 (397)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHH-HSBCHHHHGGGCSCCTTEEEECTTCHH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhh-ccCChhhccccCCCCCCeeEecCCCHH
Confidence 457899999999999999988763 5 4789988888866443 332 21110 0 116667778999
Q ss_pred HHHHhccCCCcEEEEEeCCCCCCCc-c---cCHHHHHHHHHhcCCEEEEeCCCCCCcc----c--cccccCCcEEEECCc
Q 009604 277 GLEAALNNNNVSLFFTESPTNPFLR-C---VDVKLVSDLCHKKGAIVCIDGTFATPLN----Q--KALSLGADLVLHSAT 346 (531)
Q Consensus 277 ~Le~al~~~~tklV~lesP~NPtG~-v---~dl~~I~~la~~~gi~lIvD~a~a~~~~----~--~~l~~gaDivv~S~s 346 (531)
+|++++++ ++++|++++|+||||. + .++++|.++|+++|++||+|++|..... . ..+....|++ |++
T Consensus 175 ~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~s 251 (397)
T 2ord_A 175 DLRRKMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTA 251 (397)
T ss_dssp HHHHHCCT-TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EEC
T ss_pred HHHHHhhc-CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eec
Confidence 99999987 5999999999999999 4 4688999999999999999999863211 1 1112236866 678
Q ss_pred cccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCCceEEe
Q 009604 347 KFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEAHPKVKRVH 424 (531)
Q Consensus 347 K~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~La~~L~~~p~v~~V~ 424 (531)
|.+++ |. ..|+++++++++ .++..........++..++.+...++.+. ...++..++++.+.+.|++.+. .
T Consensus 252 K~~~~-G~-r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~ 324 (397)
T 2ord_A 252 KGLGG-GV-PIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKE----E 324 (397)
T ss_dssp GGGGT-TS-CCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred cccCC-Cc-CeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH----h
Confidence 99994 33 357777777765 44321111223346666666666666553 2345556677777777765310 0
Q ss_pred CCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCC
Q 009604 425 YPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 504 (531)
Q Consensus 425 ~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~ 504 (531)
+|... ...+.|++++|++++. ....+|.+.|...++.+..| .
T Consensus 325 ~~~~~----------~~~~~g~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~---------------------------~ 366 (397)
T 2ord_A 325 YDVVA----------DVRGMGLMIGIQFREE-VSNREVATKCFENKLLVVPA---------------------------G 366 (397)
T ss_dssp CTTEE----------EEEEETTEEEEEECTT-SCHHHHHHHHHHTTEECEEE---------------------------T
T ss_pred CCceE----------EEEEEeEEEEEEECCh-HHHHHHHHHHHHCCCEEccC---------------------------C
Confidence 11100 0112467899999642 23456666665445444322 1
Q ss_pred CCeEEEEecCCCH----HHHHHHHHHHHHhC
Q 009604 505 DNLVRFSFGVEDF----EDLKADVLQALHAI 531 (531)
Q Consensus 505 ~~lIRlSvGlE~~----edli~dL~~AL~~i 531 (531)
++.+||++++..+ +++++.|.+++++|
T Consensus 367 ~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 397 (397)
T 2ord_A 367 NNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397 (397)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEECCcCCCHHHHHHHHHHHHHHHhhC
Confidence 4689999765444 44555555555543
No 156
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.73 E-value=2.6e-22 Score=209.51 Aligned_cols=270 Identities=15% Similarity=0.112 Sum_probs=172.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhccCCC
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al~~~~ 286 (531)
.++++++++|++|+.+++.+++++||+|+++.+.|.+.... +...|.++..++. .|+++|++++++.+
T Consensus 89 ~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~ 164 (392)
T 3b1d_A 89 KEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARS----VRLNNRKLVSNSLKEENGLFQIDFEQLENDIVEND 164 (392)
Confidence 45677777778999999999999999999999999886533 3445666655543 36788998887335
Q ss_pred cEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc-----ccc---c--cCCcEEEECCccccccCC
Q 009604 287 VSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL---S--LGADLVLHSATKFIGGHN 353 (531)
Q Consensus 287 tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~-----~~l---~--~gaDivv~S~sK~lgg~g 353 (531)
+++|++++|+||+|.+.+ +++|.++|+++|++||+|++|...... ... . .+.++++.|+||.++..|
T Consensus 165 ~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 244 (392)
T 3b1d_A 165 VKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAG 244 (392)
Confidence 899999999999999986 889999999999999999998653211 111 1 345689999999997555
Q ss_pred CceEEEEEeC-hHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHc-CCCceEEeCC
Q 009604 354 DVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAKILEA-HPKVKRVHYP 426 (531)
Q Consensus 354 ~v~gG~iv~~-~~li~~l~~~~~~~G-~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~La~~L~~-~p~v~~V~~p 426 (531)
. ..|+++++ +++++.++.....++ ...++...+.+...++. +....++..++++.+.+.|++ +|++.. . +
T Consensus 245 ~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~-~ 321 (392)
T 3b1d_A 245 T-KNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKV-M-K 321 (392)
Confidence 3 46777775 458887776554442 12334333333333332 233334445566666677765 444321 1 1
Q ss_pred CCCCCchhhhhhhhcCCcccE-EEEEEcCCHHHHHHHHHHcC-CCCcccccCCcccccccCccccccCCCHHHHHhcCCC
Q 009604 427 GLKSHPEHHIATQQMTGFGGV-VSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 504 (531)
Q Consensus 427 gl~s~p~~~l~~~~~~g~g~i-vsf~l~g~~~~~~~fl~~L~-~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~ 504 (531)
..|++ ++++++.......+|.+.|. ..++.+..|..+. + ..
T Consensus 322 ----------------~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~----~-----------------~~ 364 (392)
T 3b1d_A 322 ----------------PQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYG----S-----------------EG 364 (392)
Confidence 12333 35677531123456777773 5566666553321 0 12
Q ss_pred CCeEEEEecCC--CHHHHHHHHHHHH
Q 009604 505 DNLVRFSFGVE--DFEDLKADVLQAL 528 (531)
Q Consensus 505 ~~lIRlSvGlE--~~edli~dL~~AL 528 (531)
++.+||+++.. +.++.++.|.++|
T Consensus 365 ~~~iRi~~~~~~e~i~~~l~~l~~~l 390 (392)
T 3b1d_A 365 ELHARLNIAAPKSLVEEICKRIVCCL 390 (392)
Confidence 46899999863 3334444444444
No 157
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.83 E-value=1.8e-19 Score=190.30 Aligned_cols=253 Identities=11% Similarity=0.077 Sum_probs=161.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCC---------cEEEEeCCCCH----HHHHHh
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG---------ITATVIDPADM----EGLEAA 281 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~G---------i~v~~vd~~d~----e~Le~a 281 (531)
.+++++++++++++.+ +..++++||+|+++.+.|.+....+.. ....+ .++.+++.++. .++++
T Consensus 119 ~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 195 (432)
T 3ei9_A 119 DDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVI-MGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST- 195 (432)
T ss_dssp GGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHH-HTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-
T ss_pred cceEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHH-cCCcccccccccccCceEEeccCcccCCcCChhh-
Confidence 4567777777788886 578889999999999999987765533 22222 23444443211 12222
Q ss_pred ccCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc----cccc----cCCcEEEECCccccc
Q 009604 282 LNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS----LGADLVLHSATKFIG 350 (531)
Q Consensus 282 l~~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~----~~l~----~gaDivv~S~sK~lg 350 (531)
.+ ++++|++++|+||||.+++ +++|+++|+++|++||+|++|+..... .... .+.++++.|+||.++
T Consensus 196 -~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 273 (432)
T 3ei9_A 196 -VG-RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAG 273 (432)
T ss_dssp -CC-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHC
T ss_pred -CC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccC
Confidence 23 4899999999999999986 566777799999999999998743211 1111 245699999999998
Q ss_pred cCCCceEEEEEeChHH--------HHHHHHHhhhcCCCchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcC
Q 009604 351 GHNDVLAGSISGSGKL--------VTQIRNLHHVLGGALNPNAAYLIIR-----GMKTLHLRVQQQNSTALRMAKILEAH 417 (531)
Q Consensus 351 g~g~v~gG~iv~~~~l--------i~~l~~~~~~~G~~~s~~~a~l~l~-----~L~tl~~r~~~~~~na~~La~~L~~~ 417 (531)
..|.. .|++++++++ .+.+...........++.....+.. +.+.+....++..++++.+.+.|+++
T Consensus 274 ~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 352 (432)
T 3ei9_A 274 FTGVR-LGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL 352 (432)
T ss_dssp TTTTC-CEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Ccccc-eEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 66643 6788888776 6666655443333344443332222 33445666677778889999999876
Q ss_pred CCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCCcccccCCcccccccCccccccCCCHH
Q 009604 418 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQS 496 (531)
Q Consensus 418 p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~ 496 (531)
++.. ..|. .+.++++.+++. ....+.+.| +..++.+..|..+. +
T Consensus 353 -g~~~-~~~~----------------~~~~~~~~~~~~--~~~~~~~~ll~~~gv~v~~g~~f~----~----------- 397 (432)
T 3ei9_A 353 -GYDV-YGGK----------------NAPYVWVHFPNQ--SSWDVFAEILEKTHVVTTPGSGFG----P----------- 397 (432)
T ss_dssp -TCCE-EECS----------------SSSEEEEECTTS--CHHHHHHHHHHHHCEECEEGGGGC----G-----------
T ss_pred -Ccee-cCCC----------------cceEEEEECCCC--CHHHHHHHHHHHCCEEEeCchHhC----C-----------
Confidence 3321 1111 356788988742 223344433 23366666664321 0
Q ss_pred HHHhcCCCCCeEEEEecC
Q 009604 497 ERLKYGIMDNLVRFSFGV 514 (531)
Q Consensus 497 ~~~~~gi~~~lIRlSvGl 514 (531)
..++.||||++.
T Consensus 398 ------~~~~~iRis~~~ 409 (432)
T 3ei9_A 398 ------GGEGFVRVSAFG 409 (432)
T ss_dssp ------GGTTEEEEECCS
T ss_pred ------CCCCEEEEEecC
Confidence 025789999865
No 158
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.83 E-value=2.8e-19 Score=190.04 Aligned_cols=272 Identities=15% Similarity=0.155 Sum_probs=169.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc---------cCC-CEEEEcCCCccchHHHHHhhcc---------cCCcEEEEeCCCC
Q 009604 214 GAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP---------KMGITATVIDPAD 274 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all---------~pG-D~VIv~~~~y~~t~~~~~~~l~---------~~Gi~v~~vd~~d 274 (531)
+.+++++++||++|+.+++..+. .+| |+||+.++.|++.......... .....+..++..|
T Consensus 121 g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d 200 (433)
T 1z7d_A 121 GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDD 200 (433)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTC
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCC
Confidence 56789999999999999998753 468 9999999999775321111111 0113455677789
Q ss_pred HHHHHHhccCCCcEEEEEeCCCCCCCccc----CHHHHHHHHHhcCCEEEEeCCCCCCcc------ccccccCCcEEEEC
Q 009604 275 MEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHS 344 (531)
Q Consensus 275 ~e~Le~al~~~~tklV~lesP~NPtG~v~----dl~~I~~la~~~gi~lIvD~a~a~~~~------~~~l~~gaDivv~S 344 (531)
+++|+++++..++++|++|..+|++|.+. ++++|.++|+++|++||+||++..... ........|++ |
T Consensus 201 ~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t 278 (433)
T 1z7d_A 201 LEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--L 278 (433)
T ss_dssp HHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--E
T ss_pred HHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--E
Confidence 99999999422589999988778899876 799999999999999999999853211 12223457876 6
Q ss_pred CccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCceE
Q 009604 345 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKR 422 (531)
Q Consensus 345 ~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~La~~L~~~p~v~~ 422 (531)
++|.+++ |...+|++++++++++.+...........++..++.+...++.+.. ..++..++.+.+.+.|++...
T Consensus 279 ~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~--- 354 (433)
T 1z7d_A 279 LGKALSG-GHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELK--- 354 (433)
T ss_dssp ECGGGGT-TSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT---
T ss_pred ECccccC-CCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---
Confidence 8899985 3234788999988877654321111223456666666666665532 345555666777776654210
Q ss_pred EeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcC
Q 009604 423 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 502 (531)
Q Consensus 423 V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~g 502 (531)
.+|.. ....+.|++++|+++.......++.+.|...++.+..+
T Consensus 355 -~~~~~----------~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~-------------------------- 397 (433)
T 1z7d_A 355 -DSKIV----------RDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV-------------------------- 397 (433)
T ss_dssp -TCTTE----------EEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE--------------------------
T ss_pred -hCCCe----------EEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC--------------------------
Confidence 01110 01123578999999642112456666665445433321
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 503 IMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 503 i~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
.++.|||++++..+++.++.+.++|+
T Consensus 398 -~~~~iRi~~~~~~t~e~i~~~l~~l~ 423 (433)
T 1z7d_A 398 -HDKTIRLTPPLCITKEQLDECTEIIV 423 (433)
T ss_dssp -TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred -CCCEEEEECCcCCCHHHHHHHHHHHH
Confidence 14689999987666665655555554
No 159
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.83 E-value=4.6e-19 Score=188.81 Aligned_cols=270 Identities=15% Similarity=0.113 Sum_probs=175.4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc---------cCC-CEEEEcCCCccchHHHHHhhcc---------cCCcEEEEeCCCC
Q 009604 214 GAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP---------KMGITATVIDPAD 274 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all---------~pG-D~VIv~~~~y~~t~~~~~~~l~---------~~Gi~v~~vd~~d 274 (531)
|.+++++++||++|+.+++..+. .+| |+||+.++.|++.......... .....+..++..|
T Consensus 132 g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d 211 (439)
T 2oat_A 132 NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYND 211 (439)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCC
Confidence 77889999999999999998764 367 8999999998775322211111 1114566677789
Q ss_pred HHHHHHhccCCCcEEEEEeCCCCCCCccc----CHHHHHHHHHhcCCEEEEeCCCCCCcc------ccccccCCcEEEEC
Q 009604 275 MEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHS 344 (531)
Q Consensus 275 ~e~Le~al~~~~tklV~lesP~NPtG~v~----dl~~I~~la~~~gi~lIvD~a~a~~~~------~~~l~~gaDivv~S 344 (531)
+++|+++++..++++|++|..+|++|.+. ++++|.++|++||++||+||++..... ........|++ |
T Consensus 212 ~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t 289 (439)
T 2oat_A 212 LPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--L 289 (439)
T ss_dssp HHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--E
T ss_pred HHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--E
Confidence 99999999533589999987778899876 799999999999999999999843211 12223356876 7
Q ss_pred CccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCceE
Q 009604 345 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKR 422 (531)
Q Consensus 345 ~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~La~~L~~~p~v~~ 422 (531)
++|.+++ |...+|++++++++++.+...........++..+..+...++.+.. ..++..++.+.+.+.|++..
T Consensus 290 ~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~---- 364 (439)
T 2oat_A 290 LGKALSG-GLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP---- 364 (439)
T ss_dssp ECGGGGT-TSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSC----
T ss_pred ecccccC-CCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc----
Confidence 8899986 3134789999988876664322112223456666666666665542 34555566677777776531
Q ss_pred EeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhc
Q 009604 423 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKY 501 (531)
Q Consensus 423 V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~-~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~ 501 (531)
+|.. ....+.|.+++++++... ....++.+.|...++.+..+
T Consensus 365 --~~~~----------~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~------------------------- 407 (439)
T 2oat_A 365 --SDVV----------TAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT------------------------- 407 (439)
T ss_dssp --TTTE----------EEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS-------------------------
T ss_pred --CCCc----------EEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC-------------------------
Confidence 1110 011245789999996431 12446666665445433321
Q ss_pred CCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 502 GIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 502 gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
.++.|||++++..+++.++.+.++|+
T Consensus 408 --~~~~iRi~~~~~~t~e~i~~~l~~l~ 433 (439)
T 2oat_A 408 --HGDIIRFAPPLVIKEDELRESIEIIN 433 (439)
T ss_dssp --SSSEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --CCCEEEEECccCCCHHHHHHHHHHHH
Confidence 14789999987665555555555543
No 160
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.83 E-value=4.9e-19 Score=187.19 Aligned_cols=265 Identities=14% Similarity=0.116 Sum_probs=171.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc-------CC-CEEEEcCCCccchHHHHHhhcc---------cCCcEEEEeCCCCHH
Q 009604 214 GAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP---------KMGITATVIDPADME 276 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~-------pG-D~VIv~~~~y~~t~~~~~~~l~---------~~Gi~v~~vd~~d~e 276 (531)
|.+++++++||++|+.+++..+.. +| ++||+.++.|++.......... .....+..++..|++
T Consensus 113 g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~ 192 (420)
T 2pb2_A 113 FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLH 192 (420)
T ss_dssp SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHH
Confidence 678899999999999999998765 77 4999999998765322211111 111235667777999
Q ss_pred HHHHhccCCCcEEEEEeCCCCCCCcc----cCHHHHHHHHHhcCCEEEEeCCCCCCcc------ccccccCCcEEEECCc
Q 009604 277 GLEAALNNNNVSLFFTESPTNPFLRC----VDVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVLHSAT 346 (531)
Q Consensus 277 ~Le~al~~~~tklV~lesP~NPtG~v----~dl~~I~~la~~~gi~lIvD~a~a~~~~------~~~l~~gaDivv~S~s 346 (531)
+|++++++ ++++|++|+++|++|.+ .++++|.++|+++|++||+||+|..... ........|++ |++
T Consensus 193 ~le~~i~~-~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~s 269 (420)
T 2pb2_A 193 AVKAVMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSA 269 (420)
T ss_dssp HHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EEC
T ss_pred HHHHHhcc-CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eec
Confidence 99999987 49999999999888852 3689999999999999999999853211 12233457877 578
Q ss_pred cccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcC----CCc
Q 009604 347 KFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEAH----PKV 420 (531)
Q Consensus 347 K~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~La~~L~~~----p~v 420 (531)
|.+++ |. ..|++++++++++.++..........++..++.+...++.+. ...++..++.+.+.+.|++. |.+
T Consensus 270 K~l~~-G~-~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 347 (420)
T 2pb2_A 270 KALGG-GF-PVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIF 347 (420)
T ss_dssp GGGGT-TS-CCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred ccccC-CC-ceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 99994 33 467888888876655432111122346666666666666542 34455566677777777653 222
Q ss_pred eEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHH
Q 009604 421 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL 499 (531)
Q Consensus 421 ~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~-~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~ 499 (531)
.. ..+.|++++|+++... ....++.+.|...++.+..|
T Consensus 348 ~~------------------~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~----------------------- 386 (420)
T 2pb2_A 348 SD------------------IRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNA----------------------- 386 (420)
T ss_dssp EE------------------EEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEES-----------------------
T ss_pred EE------------------EEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeC-----------------------
Confidence 11 1235788999986421 13556777765445444322
Q ss_pred hcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009604 500 KYGIMDNLVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 500 ~~gi~~~lIRlSvGlE~~edli~dL~~AL 528 (531)
.++.|||++.+..+++.++.+.++|
T Consensus 387 ----~~~~iRl~~~~~~t~eei~~~~~~l 411 (420)
T 2pb2_A 387 ----GADVMRFAPSLVVEEADIHEGMQRF 411 (420)
T ss_dssp ----STTEEEECCCTTCCHHHHHHHHHHH
T ss_pred ----CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 1468999977655444444444444
No 161
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.83 E-value=3.3e-20 Score=191.09 Aligned_cols=259 Identities=11% Similarity=0.022 Sum_probs=166.5
Q ss_pred cEEEe-CChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---------CHHHHHHhccCCC
Q 009604 217 STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---------DMEGLEAALNNNN 286 (531)
Q Consensus 217 ~~i~~-sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---------d~e~Le~al~~~~ 286 (531)
+++++ ++|++++.+++.+++++||+|++..+.|.+.+ +...++..| ++++++.. |.++++ +++ +
T Consensus 69 ~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-~ 142 (362)
T 2c0r_A 69 KVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-N 142 (362)
T ss_dssp EEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-T
T ss_pred EEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCC-C
Confidence 55555 56679999999999999999988766654432 112344456 66655421 333332 666 4
Q ss_pred cEEEEEeCCCCCCCcc-cCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeChH
Q 009604 287 VSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 365 (531)
Q Consensus 287 tklV~lesP~NPtG~v-~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~ 365 (531)
||+|++++|+||||.+ .|+++| +|+++|+|++|+.+...-.+. ..|+++.|+||++++.| .|+++++++
T Consensus 143 t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~-~~d~~~~s~~K~~g~~G---~G~l~~~~~ 212 (362)
T 2c0r_A 143 AAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLN-QFGLVYAGAQKNLGPSG---VTVVIVRED 212 (362)
T ss_dssp EEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGG-GCSEEEEETTTTTCCSS---CEEEEEEGG
T ss_pred cCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchh-HCcEEEEeccccccCcC---cEEEEEcHH
Confidence 9999999999999996 677776 899999999987653321122 14899999999998665 588888887
Q ss_pred HHHHHHHH------------hhhcCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCC
Q 009604 366 LVTQIRNL------------HHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAHPKVKRVHYPG 427 (531)
Q Consensus 366 li~~l~~~------------~~~~G~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~p~v~~V~~pg 427 (531)
+++.++.. ......+.+....+.+..+++. +..+.++..++++.+.+.|++++.+-.+..+
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~- 291 (362)
T 2c0r_A 213 LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD- 291 (362)
T ss_dssp GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC-
T ss_pred HHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCC-
Confidence 76554321 1112234444444444444432 4555667778888888999877533112111
Q ss_pred CCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009604 428 LKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL 507 (531)
Q Consensus 428 l~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~l 507 (531)
+.+ ..+++++|.+++ .....+|.+.|+..++.+..|.. ..+.
T Consensus 292 ----~~~--------~~~~~~~~~~~~-~~~~~~~~~~L~~~gi~~~~g~~-------------------------~~~~ 333 (362)
T 2c0r_A 292 ----VDS--------RSDMNITFRLAS-EELEKEFVKASEQEGFVGLKGHR-------------------------SVGG 333 (362)
T ss_dssp ----GGG--------BCSSEEEEECSC-HHHHHHHHHHHHHTTEESCBCCT-------------------------TTCS
T ss_pred ----hHH--------cCCcEEEEEcCC-cchHHHHHHHHHHCCCeeccCCC-------------------------CCCE
Confidence 111 134678888864 24567788888666665443311 0246
Q ss_pred EEEEecCCCHHHHHHHHHHHHHh
Q 009604 508 VRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 508 IRlSvGlE~~edli~dL~~AL~~ 530 (531)
||||+|..++++.++.+.++|++
T Consensus 334 iRis~~~~~~~e~i~~l~~~l~~ 356 (362)
T 2c0r_A 334 LRASIYNAVPYESCEALVQFMEH 356 (362)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999987777777777777654
No 162
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.83 E-value=2.1e-20 Score=191.81 Aligned_cols=260 Identities=11% Similarity=0.029 Sum_probs=170.3
Q ss_pred CcEEEeCCh-HHHHHHHHHHhccC---CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------CCHHHHHH-hccC
Q 009604 216 ESTVIMASG-MSASTVMLLALVPA---GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ADMEGLEA-ALNN 284 (531)
Q Consensus 216 e~~i~~sSG-~~Ai~~al~all~p---GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------~d~e~Le~-al~~ 284 (531)
+++++++++ ++|+.+++.+++.+ ||+|+++.+.|.. . ..++..| ++.+++. .|+++|++ ++++
T Consensus 67 ~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~----~-~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~ 140 (360)
T 1w23_A 67 YQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKA----L-KEAKLLG-ETHIAASTKANSYQSIPDFSEFQLNE 140 (360)
T ss_dssp EEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHH----H-HHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCT
T ss_pred ceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHH----H-HHHHHhC-CeEEeecccccCcCCccchHhhccCC
Confidence 456677666 89999999998865 5667766555433 1 2245568 7777653 36788888 8876
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeCh
Q 009604 285 NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG 364 (531)
Q Consensus 285 ~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~ 364 (531)
+||+|++++|+||||.+.+ + +++++|++||+|++|+.+.....+. ..|++++|+||.+++.| .|++++++
T Consensus 141 -~~k~v~~~~~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~~~~~~-~~di~~~s~sK~~~~~G---~G~~~~~~ 210 (360)
T 1w23_A 141 -NDAYLHITSNNTIYGTQYQ--N---FPEINHAPLIADMSSDILSRPLKVN-QFGMIYAGAQKNLGPSG---VTVVIVKK 210 (360)
T ss_dssp -TEEEEEEESEETTTTEECS--S---CCCCCSSCEEEECTTTTTSSCCCGG-GCSEEEEETTTTTSCTT---CEEEEEEH
T ss_pred -CCCEEEEeCCCCCcceecc--c---ccccCCceEEEechhhcCCCCcCcc-cCCEEEEEcccccCCCC---cEEEEEcH
Confidence 4999999999999999987 3 3348999999999987653221122 13899999999998665 57888888
Q ss_pred HHHHHHHHHhh------------hcCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCceEEeCC
Q 009604 365 KLVTQIRNLHH------------VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAHPKVKRVHYP 426 (531)
Q Consensus 365 ~li~~l~~~~~------------~~G~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~p~v~~V~~p 426 (531)
+++++++.... ....+.+....+.+..+++. +..+.++..++++.+.+.|++.+++..+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~- 289 (360)
T 1w23_A 211 DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHA- 289 (360)
T ss_dssp HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESS-
T ss_pred HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccC-
Confidence 77655433210 11123344433333334433 344566777888899999987764311110
Q ss_pred CCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCC
Q 009604 427 GLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 506 (531)
Q Consensus 427 gl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~ 506 (531)
.|.. ..+.+++|.+++ .....+|++.|...++.+..|.. .++
T Consensus 290 ----~~~~--------~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~-------------------------~~~ 331 (360)
T 1w23_A 290 ----EKGS--------RSLMNVTFNLRN-EELNQQFLAKAKEQGFVGLNGHR-------------------------SVG 331 (360)
T ss_dssp ----CGGG--------BCSSEEEEECSS-HHHHHHHHHHHHHTTEESCBCCT-------------------------TTC
T ss_pred ----Cchh--------ccCcEEEEEcCC-CccHHHHHHHHHHCCeeeecCCC-------------------------CCC
Confidence 0110 124489999864 24567788887666655543310 146
Q ss_pred eEEEEecCCCHHHHHHHHHHHHHh
Q 009604 507 LVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 507 lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.||||++..++++.++.+.++|++
T Consensus 332 ~iRis~~~~~~~~~i~~~~~~l~~ 355 (360)
T 1w23_A 332 GCRASIYNAVPIDACIALRELMIQ 355 (360)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCHHHHHHHHHHHHH
Confidence 899999988877778887777754
No 163
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.82 E-value=2.2e-19 Score=188.19 Aligned_cols=268 Identities=12% Similarity=0.074 Sum_probs=163.0
Q ss_pred cEEEeCChHHHHHHHHHHhccCCC----EEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEE
Q 009604 217 STVIMASGMSASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFT 292 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD----~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~l 292 (531)
++++++++++++.+++.+++++|| +|+++.|+|.+....+ +..|+++..++.+ .+.++ .+ ++|+|++
T Consensus 93 ~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~d-~~~l~---~~-~~k~v~l 163 (391)
T 3bwn_A 93 YIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEET----TYVRSGMYKWEGD-AWGFD---KK-GPYIELV 163 (391)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHH----HTTCBTTEEEEEE-STTCC---CC-SCEEEEE
T ss_pred eEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHH----HHcCCeEEEecCC-HHHcC---CC-CCEEEEE
Confidence 455554445999999999999999 9999999999865444 3445554444321 22222 23 5899999
Q ss_pred eCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcccccc--ccCCcEEEECCccccccCCCceEEEEEe-ChHHHHH
Q 009604 293 ESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL--SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQ 369 (531)
Q Consensus 293 esP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l--~~gaDivv~S~sK~lgg~g~v~gG~iv~-~~~li~~ 369 (531)
++|+||||.+++ +|++.++.++++||+|++|..+. ..++ ..+.++++.|+||.++.+|.+ .|+++. ++++++.
T Consensus 164 ~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~-~~~l~~~~~~~i~~~S~SK~~g~~GlR-iG~~~~~~~~l~~~ 239 (391)
T 3bwn_A 164 TSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPH-YTPITRRQDHDIMLFTFSKITGHAGSR-IGWALVKDKEVAKK 239 (391)
T ss_dssp ESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTT-TSCCCCCBCCSEEEEEHHHHHSCGGGC-EEEEEECCHHHHHH
T ss_pred CCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCC-CCccccCCCCeEEEEechhhcCCCccc-eEEEEecCHHHHHH
Confidence 999999999986 45442233349999999987421 1112 245789999999999877755 577775 8889888
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhh
Q 009604 370 IRNLHHVLGGALNPNAAYLIIRGMKT--------------LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHH 435 (531)
Q Consensus 370 l~~~~~~~G~~~s~~~a~l~l~~L~t--------------l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~ 435 (531)
+...........+......+...++. +....+...++++.+.+.|++++++. +..|. .+. ..
T Consensus 240 l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~-~~~--~~ 315 (391)
T 3bwn_A 240 MVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFT-LPKYP-EAF--CN 315 (391)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEE-CCCCC-CEE--ET
T ss_pred HHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cccCC-ccc--cc
Confidence 88766533334454444444344432 33334555677788889998876542 21121 000 00
Q ss_pred hhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC
Q 009604 436 IATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE 515 (531)
Q Consensus 436 l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE 515 (531)
.........|.++++.++.. +.. ...|+..++.+..|..+. ..++.||||++.
T Consensus 316 f~~~~~~~~g~~~~~~~~~~-~~~---~~~l~~~gV~v~pg~~fg----------------------~~~~~iRis~~~- 368 (391)
T 3bwn_A 316 YFGKSLESYPAFAWLGTKEE-TDL---VSELRRHKVMSRAGERCG----------------------SDKKHVRVSMLS- 368 (391)
T ss_dssp TTTEEECCCCSEEEEEESSS-CCH---HHHHHHTTEECEEGGGGT----------------------CCTTEEEEESCS-
T ss_pred cccccCCCcceEEEecCCcH-HHH---HHHHHHCCEEEccCCCCC----------------------CCCCEEEEEecC-
Confidence 00000112355788888642 222 333434566776664431 125789999995
Q ss_pred CHHHHHHHHHHHHH
Q 009604 516 DFEDLKADVLQALH 529 (531)
Q Consensus 516 ~~edli~dL~~AL~ 529 (531)
+++.++.+.++|.
T Consensus 369 -~~e~i~~~~~~L~ 381 (391)
T 3bwn_A 369 -REDVFNVFLERLA 381 (391)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHH
Confidence 3444555555554
No 164
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.82 E-value=6.2e-19 Score=184.65 Aligned_cols=239 Identities=17% Similarity=0.149 Sum_probs=146.5
Q ss_pred CCcE-EEeCChHHHHHHHHHHhccCCCEEEEcCCCccchH-HHHHhhcccCCcEEEEeCC------CCHHHHHHhccCCC
Q 009604 215 AEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR-IFIETVLPKMGITATVIDP------ADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~~-i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~-~~~~~~l~~~Gi~v~~vd~------~d~e~Le~al~~~~ 286 (531)
.+.. +++++|++|+..++.+++++||+|+++.+.|.+.. ..........++.+..++. .|+++|++++++.+
T Consensus 93 ~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 172 (425)
T 3ecd_A 93 AGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHK 172 (425)
T ss_dssp CSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHC
T ss_pred CCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcC
Confidence 3445 45899999999999999999999999999998732 1111112222334445543 38999999997324
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccccCCcEEEECCccccccCCCceEEEEE
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSIS 361 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv 361 (531)
+++|++++|+|| ...++++|.++|+++|++||+|+++..+.. ...+. .+|+++.|+||+++|+. +|+++
T Consensus 173 ~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~---~g~~~ 246 (425)
T 3ecd_A 173 PSLIIAGFSAYP--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRGPR---GGFVL 246 (425)
T ss_dssp CSEEEEECSCCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCCCS---CEEEE
T ss_pred CcEEEEccccCC--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccCCCC---cEEEE
Confidence 899999999985 678999999999999999999999643321 22233 27999999999996643 68888
Q ss_pred eC-hHHHHHHHHHhhh--cCCCchHHHHHH--HH-HHH-HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchh
Q 009604 362 GS-GKLVTQIRNLHHV--LGGALNPNAAYL--II-RGM-KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEH 434 (531)
Q Consensus 362 ~~-~~li~~l~~~~~~--~G~~~s~~~a~l--~l-~~L-~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~ 434 (531)
++ +++.+.+...... .+....+..+.+ ++ ..+ +.+....++..++++.+.+.|.+. ++. +..|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~------- 317 (425)
T 3ecd_A 247 TNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVD-LVTGG------- 317 (425)
T ss_dssp ESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-EGGGS-------
T ss_pred eCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCe-eccCC-------
Confidence 87 4666666553322 112222222211 11 111 334455667778888888888873 332 22111
Q ss_pred hhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccC
Q 009604 435 HIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG 476 (531)
Q Consensus 435 ~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~G 476 (531)
+.++++++.++........+.+.|+..++.+..+
T Consensus 318 --------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 351 (425)
T 3ecd_A 318 --------TDNHLLLVDLRPKGLKGAQVEQALERAGITCNKN 351 (425)
T ss_dssp --------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEC
T ss_pred --------CCceEEEEEeCCCCCCHHHHHHHHHHcCCEeccc
Confidence 1356888887531122344555555456666543
No 165
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.82 E-value=1.4e-19 Score=195.23 Aligned_cols=196 Identities=17% Similarity=0.117 Sum_probs=134.9
Q ss_pred EEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHh----hcccCC--cEEEEe--C----CCCHHHHHHhccCC
Q 009604 218 TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET----VLPKMG--ITATVI--D----PADMEGLEAALNNN 285 (531)
Q Consensus 218 ~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~----~l~~~G--i~v~~v--d----~~d~e~Le~al~~~ 285 (531)
.|+++||++|+.+++.++++|||+|+++++.|++....... .....| +.+..+ + ..|+++|++++++.
T Consensus 113 ~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~ 192 (483)
T 1rv3_A 113 NVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLF 192 (483)
T ss_dssp ECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhc
Confidence 58899999989888999999999999999999875421100 011112 344444 3 14899999999822
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCc-----cccccccCCcEEEECCccccccCCCceEEEE
Q 009604 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLVLHSATKFIGGHNDVLAGSI 360 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~-----~~~~l~~gaDivv~S~sK~lgg~g~v~gG~i 360 (531)
+||+|++ +++|++ .+.|+++|.++|+++|++||+|+++..++ ...++. ++|+++.|+||+++|+. +|++
T Consensus 193 ~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div~~s~~K~l~Gpr---gG~i 266 (483)
T 1rv3_A 193 HPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVVTTTTHKTLRGCR---AGMI 266 (483)
T ss_dssp CCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEEEEESSGGGCCCS---CEEE
T ss_pred CCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEEEecCcccCCCCC---ceEE
Confidence 5999999 999998 99999999999999999999999976432 122333 68999999999997664 6888
Q ss_pred EeChH---------------HHHHHHHHh-h-hcCCCchH-HHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCC
Q 009604 361 SGSGK---------------LVTQIRNLH-H-VLGGALNP-NAAY-LIIRGM--KTLHLRVQQQNSTALRMAKILEAHPK 419 (531)
Q Consensus 361 v~~~~---------------li~~l~~~~-~-~~G~~~s~-~~a~-l~l~~L--~tl~~r~~~~~~na~~La~~L~~~p~ 419 (531)
+++++ +.+.+.... . ..|+.... ..+. .++..+ ..+..+.++..++++.+.+.|.++ +
T Consensus 267 ~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 345 (483)
T 1rv3_A 267 FYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-G 345 (483)
T ss_dssp EEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred EEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 88764 333333221 1 12222222 1111 112222 234566777888999999999886 5
Q ss_pred c
Q 009604 420 V 420 (531)
Q Consensus 420 v 420 (531)
+
T Consensus 346 ~ 346 (483)
T 1rv3_A 346 Y 346 (483)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.82 E-value=7.5e-19 Score=188.06 Aligned_cols=267 Identities=12% Similarity=0.112 Sum_probs=173.7
Q ss_pred EEEeCChH-HHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhc-cC-
Q 009604 218 TVIMASGM-SASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAAL-NN- 284 (531)
Q Consensus 218 ~i~~sSG~-~Ai~~al~all~--pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al-~~- 284 (531)
++++++|+ .++.+++.++.. +|++||++.+.|.+... .++..|+++..++. .|+++|+++| ++
T Consensus 152 ~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~----~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~ 227 (456)
T 2z67_A 152 AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK----AVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEI 227 (456)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH----HHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHH
T ss_pred EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH----HHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHh
Confidence 77888888 566656666543 78889999999987543 34446888877764 3799999999 42
Q ss_pred --CCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-cccc---cc--CCcEEEECCccccccCCCce
Q 009604 285 --NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL---SL--GADLVLHSATKFIGGHNDVL 356 (531)
Q Consensus 285 --~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-~~~l---~~--gaDivv~S~sK~lgg~g~v~ 356 (531)
.++++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.... ..+. .+ ++|+++.|+||+++++.+
T Consensus 228 ~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g-- 305 (456)
T 2z67_A 228 ELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIG-- 305 (456)
T ss_dssp HTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSS--
T ss_pred hCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCC--
Confidence 2588899999999999999999999999999999999999875432 1111 12 799999999998665432
Q ss_pred EEEEEe-ChHHHHHHHHHhhhcCCC--chHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCC---CceEEeCCCC
Q 009604 357 AGSISG-SGKLVTQIRNLHHVLGGA--LNPNAAYLIIRG--MKTLHLRVQQQNSTALRMAKILEAHP---KVKRVHYPGL 428 (531)
Q Consensus 357 gG~iv~-~~~li~~l~~~~~~~G~~--~s~~~a~l~l~~--L~tl~~r~~~~~~na~~La~~L~~~p---~v~~V~~pgl 428 (531)
+|+++. ++++++.+... ..|.. ......+.++.. .+.+..+.++..++++++.+.|++.+ ++ .+.-|
T Consensus 306 ~G~l~~~~~~~~~~l~~~--~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-~v~~~-- 380 (456)
T 2z67_A 306 GGLVYSTDAEFIKEISLS--YPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGG-KFLDV-- 380 (456)
T ss_dssp CEEEEESCHHHHHHHHTT--SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-CBCCC--
T ss_pred eEEEEEcCHHHHhhcCcC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-EecCC--
Confidence 688888 56777776432 22321 112233333322 24455666777788899999888764 42 12111
Q ss_pred CCCchhhhhhhhcCCcccEEEEEE--cCCHHHHHHHHHHcCCCCc---ccc--cCCcccccccCccccccCCCHHHHHhc
Q 009604 429 KSHPEHHIATQQMTGFGGVVSFEV--DGDLTATIKFIDALKIPYI---APS--FGGCESIVDQPAIMSYWDLSQSERLKY 501 (531)
Q Consensus 429 ~s~p~~~l~~~~~~g~g~ivsf~l--~g~~~~~~~fl~~L~~~~i---avS--~Gg~~Sli~~p~~~s~~~~~~~~~~~~ 501 (531)
. ++++|.+ ++. ...+.+.|...++ .+. .| .+. .. |..
T Consensus 381 ---------------~-~~v~~~~~~~~~---~~~l~~~L~~~gi~~~rv~~~~g-~f~-G~------~~~--------- 424 (456)
T 2z67_A 381 ---------------E-SPIASCISVNSD---PVEIAAKLYNLRVTGPRGIKKTD-HFG-NC------YLG--------- 424 (456)
T ss_dssp ---------------C-CSSEEEEECSSC---HHHHHHHHHHTTEESCEEECTTC-HHH-HT------CSS---------
T ss_pred ---------------C-CeEEEEEecccH---HHHHHHHHHHcCCCcceEEeecC-ccc-cc------ccc---------
Confidence 1 3566766 432 2233444432221 111 00 000 00 000
Q ss_pred CCCCCeEEEEecCCCHHHHHHHHHHHHHhC
Q 009604 502 GIMDNLVRFSFGVEDFEDLKADVLQALHAI 531 (531)
Q Consensus 502 gi~~~lIRlSvGlE~~edli~dL~~AL~~i 531 (531)
....++||+|+++.++++.++.+.++|+++
T Consensus 425 ~~~~~~vr~s~~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 425 TYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp CCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred ccCcchhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 012478999999999999999999988753
No 167
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.82 E-value=1.7e-19 Score=188.57 Aligned_cols=235 Identities=16% Similarity=0.138 Sum_probs=146.5
Q ss_pred EEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHh-hcccCCcEEEEe--C---CCCHHHHHHhccCCCcEEEE
Q 009604 218 TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVI--D---PADMEGLEAALNNNNVSLFF 291 (531)
Q Consensus 218 ~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~-~l~~~Gi~v~~v--d---~~d~e~Le~al~~~~tklV~ 291 (531)
.+++++|++|+.+++.+++++||+|+++.+.|++....... .+...++....+ + ..|+++|+++++++++++|+
T Consensus 95 ~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~ 174 (420)
T 3gbx_A 95 NVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMII 174 (420)
T ss_dssp ECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEE
T ss_pred eeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEE
Confidence 45689999999999999999999999999999774311111 111112222222 2 25899999999764489999
Q ss_pred EeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccccCCcEEEECCccccccCCCceEEEEEeCh--
Q 009604 292 TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-- 364 (531)
Q Consensus 292 lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~-- 364 (531)
+++|+|| ...|+++|.++|++||++||+|+++..+.. ..... .+|+++.|+||+++|+. ||++++++
T Consensus 175 ~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~g~~---gg~~~~~~~~ 248 (420)
T 3gbx_A 175 GGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTLAGPR---GGLILAKGGD 248 (420)
T ss_dssp ECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGGCSCS---CEEEEESSCC
T ss_pred EecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccCCCCCC---ceEEEEcCCc
Confidence 9999986 478999999999999999999999754322 22222 38999999999997553 68999887
Q ss_pred -HHHHHHHHHhhh--cCCCchHHHHHH--HHH-HH-HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhh
Q 009604 365 -KLVTQIRNLHHV--LGGALNPNAAYL--IIR-GM-KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIA 437 (531)
Q Consensus 365 -~li~~l~~~~~~--~G~~~s~~~a~l--~l~-~L-~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~ 437 (531)
++.+.+...... .+....+..+.+ ++. .+ +.+..+.++..++++.+.+.|.+. ++. +..++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---------- 316 (420)
T 3gbx_A 249 EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYK-VVSGG---------- 316 (420)
T ss_dssp HHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-EGGGS----------
T ss_pred HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCe-eccCC----------
Confidence 677766653322 222222222111 111 11 344556677778888898988873 332 11111
Q ss_pred hhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCccccc
Q 009604 438 TQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF 475 (531)
Q Consensus 438 ~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~ 475 (531)
..++++++.++........+.+.|+..++.+..
T Consensus 317 -----~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 349 (420)
T 3gbx_A 317 -----TENHLFLLDLVDKNLTGKEADAALGRANITVNK 349 (420)
T ss_dssp -----CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEE
T ss_pred -----CCCeEEEEEcCCCCCCHHHHHHHHHHCCcEecc
Confidence 135678888753111233444555444555544
No 168
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.82 E-value=6e-19 Score=184.66 Aligned_cols=239 Identities=12% Similarity=0.071 Sum_probs=148.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcE-EEEeCCCCHHHHHHhccC-CCcEEEEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDPADMEGLEAALNN-NNVSLFFT 292 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~-v~~vd~~d~e~Le~al~~-~~tklV~l 292 (531)
.+++++++++++++.+++ .++++||+|+++.+.|.+....+ +..|.+ +..++.++.+.+...+.+ .++++|++
T Consensus 95 ~~~v~~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l 169 (400)
T 3asa_A 95 AKEIFISDGAKVDLFRLL-SFFGPNQTVAIQDPSYPAYLDIA----RLTGAKEIIALPCLQENAFFPEFPEDTHIDILCL 169 (400)
T ss_dssp GGGEEEESCHHHHHHHHH-HHHCSSCEEEEEESCCHHHHHHH----HHTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEE
T ss_pred HHHEEEccChHHHHHHHH-HHcCCCCEEEECCCCcHHHHHHH----HHcCCcceEecccchhcCcccChhhccCccEEEE
Confidence 456777777789998865 56689999999999998865433 345666 666654311111111111 24899999
Q ss_pred eCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc-----cccccc----CCcEEEECCccccccCCCceEEEE
Q 009604 293 ESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL----GADLVLHSATKFIGGHNDVLAGSI 360 (531)
Q Consensus 293 esP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~----gaDivv~S~sK~lgg~g~v~gG~i 360 (531)
++|+||||.+++ +++|+++|+++|+++|+|++|..... .....+ +.++++.|+||.++.+|. ..|++
T Consensus 170 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Gl-riG~~ 248 (400)
T 3asa_A 170 CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGI-RLGWT 248 (400)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTC-CCEEE
T ss_pred eCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcch-heeEE
Confidence 999999999997 56788899999999999999874211 112222 235889999999986654 36888
Q ss_pred EeChHH-------HHHHHHHhh-hcCCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCC
Q 009604 361 SGSGKL-------VTQIRNLHH-VLGGALNPNAAYLIIRGMKT--LHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKS 430 (531)
Q Consensus 361 v~~~~l-------i~~l~~~~~-~~G~~~s~~~a~l~l~~L~t--l~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s 430 (531)
++++++ ++.+..... ....+.++.....+...++. +....++..++++.+.+.|++. ++. +..|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~--- 323 (400)
T 3asa_A 249 VIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFE-VFGGE--- 323 (400)
T ss_dssp ECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCE-EEECS---
T ss_pred eeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCe-eeCCC---
Confidence 888877 565543221 11122344444433344443 3334455667788888888876 442 22111
Q ss_pred CchhhhhhhhcCCcccEEEEE-EcCCHHHHHHHHHHc-CCCCcccccCCc
Q 009604 431 HPEHHIATQQMTGFGGVVSFE-VDGDLTATIKFIDAL-KIPYIAPSFGGC 478 (531)
Q Consensus 431 ~p~~~l~~~~~~g~g~ivsf~-l~g~~~~~~~fl~~L-~~~~iavS~Gg~ 478 (531)
.|.++++. ++.+ ....++.+.| +..++.+..|..
T Consensus 324 -------------~~~~~~~~~~~~~-~~~~~~~~~l~~~~gv~v~~g~~ 359 (400)
T 3asa_A 324 -------------HAPYLWVKPTQAN-ISDRDLFDFFLREYHIAITPGIG 359 (400)
T ss_dssp -------------SSSEEEEECCCTT-CCTTTHHHHHHHHHSEECEEGGG
T ss_pred -------------CceEEEEeccCCC-CCHHHHHHHHHHhCCEEEeChhH
Confidence 35678888 7532 1122344443 223566665543
No 169
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.82 E-value=3.9e-19 Score=184.96 Aligned_cols=196 Identities=13% Similarity=0.080 Sum_probs=133.9
Q ss_pred cEEEeCChHHHHHHHH--HHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----C---CHHHHHHhccC--C
Q 009604 217 STVIMASGMSASTVML--LALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A---DMEGLEAALNN--N 285 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al--~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~---d~e~Le~al~~--~ 285 (531)
+++++++|++|+.+++ .+++++||+|+++.++|.+.... ++..|.++..++. . |+++|++++++ .
T Consensus 97 ~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 172 (397)
T 3fsl_A 97 ATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAI----FAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQA 172 (397)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHH----HHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCT
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH----HHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCC
Confidence 5677777789999984 56689999999999999886543 3446778777765 2 89999999973 2
Q ss_pred CcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc-----cc-----cccCCcEEEECCccccccC
Q 009604 286 NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KA-----LSLGADLVLHSATKFIGGH 352 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~-----~~-----l~~gaDivv~S~sK~lgg~ 352 (531)
++++|++++|+||||.+.+ +++|+++|+++|++||+|++|...... .. ...+.++++.|+||.++..
T Consensus 173 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 252 (397)
T 3fsl_A 173 GSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY 252 (397)
T ss_dssp TCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCc
Confidence 4899999999999999976 458889999999999999998754321 11 1234568999999999866
Q ss_pred CCceEEEEE---eChHHHHHHHHH-h---hhcCCCchHHHHHHH---HH--H-----HHHHHHHHHHHHHHHHHHHHHHH
Q 009604 353 NDVLAGSIS---GSGKLVTQIRNL-H---HVLGGALNPNAAYLI---IR--G-----MKTLHLRVQQQNSTALRMAKILE 415 (531)
Q Consensus 353 g~v~gG~iv---~~~~li~~l~~~-~---~~~G~~~s~~~a~l~---l~--~-----L~tl~~r~~~~~~na~~La~~L~ 415 (531)
|.+ .|+++ .++++++.+... . .......+......+ +. . .+.+..+.++..++++.+.+.|+
T Consensus 253 G~r-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 331 (397)
T 3fsl_A 253 GER-VGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLS 331 (397)
T ss_dssp GGC-CEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-eeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 46654 345655544321 1 111112222222221 11 1 23344555666778888888888
Q ss_pred cC
Q 009604 416 AH 417 (531)
Q Consensus 416 ~~ 417 (531)
++
T Consensus 332 ~~ 333 (397)
T 3fsl_A 332 TE 333 (397)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 170
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.82 E-value=1.8e-19 Score=187.75 Aligned_cols=272 Identities=13% Similarity=0.082 Sum_probs=170.7
Q ss_pred EEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCC--cEEEEeCC------CCHHHHHHhccCCCcEE
Q 009604 218 TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVIDP------ADMEGLEAALNNNNVSL 289 (531)
Q Consensus 218 ~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~G--i~v~~vd~------~d~e~Le~al~~~~tkl 289 (531)
.+++++|++|+.+++.+++++||+|+++.+.|+++.... ..+...| +++..++. .|+++|++++++.++++
T Consensus 88 ~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~ 166 (405)
T 2vi8_A 88 NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKL 166 (405)
T ss_dssp ECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTT-CTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSE
T ss_pred EEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhccc-chhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeE
Confidence 455799999999999999999999999999987753210 0001112 25555542 37999999997523888
Q ss_pred EEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc---ccccc-cCCcEEEECCccccccCCCceEEEEEeChH
Q 009604 290 FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QKALS-LGADLVLHSATKFIGGHNDVLAGSISGSGK 365 (531)
Q Consensus 290 V~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~---~~~l~-~gaDivv~S~sK~lgg~g~v~gG~iv~~~~ 365 (531)
|++ +|+|. |...|+++|.++|+++|++||+|++|+.+.. ..... .+.|+++.|+||+++|.. ||+++++++
T Consensus 167 v~~-~~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~---gG~~~~~~~ 241 (405)
T 2vi8_A 167 IVA-AAAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPR---GGMILCQEQ 241 (405)
T ss_dssp EEE-CCSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCS---CEEEEECHH
T ss_pred EEE-eCCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCC---CeEEEEcHH
Confidence 887 55553 5777899999999999999999999874221 11111 158999999999998543 499999988
Q ss_pred HHHHHHHHhhhcC-CCchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhh
Q 009604 366 LVTQIRNLHHVLG-GALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQ 439 (531)
Q Consensus 366 li~~l~~~~~~~G-~~~s~~~a~l~l~~L-----~tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~ 439 (531)
+++.++.....+. ++.++.....+...+ +.+....++..++++.+.+.|++. ++. +..|.
T Consensus 242 ~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~------------ 307 (405)
T 2vi8_A 242 FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFT-LVSGG------------ 307 (405)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-EGGGS------------
T ss_pred HHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCe-EecCC------------
Confidence 8888776542221 222232222212222 234555667778888888888876 442 22221
Q ss_pred hcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecC-----
Q 009604 440 QMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----- 514 (531)
Q Consensus 440 ~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGl----- 514 (531)
+.++++++.++........+.+.|...++.+..|.. |. |. .. ...++.+|||++.
T Consensus 308 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~------~~---~~-~~-------~~~~~~iRis~~~~~~~~ 367 (405)
T 2vi8_A 308 ---TDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTI------PY---DP-ES-------PFVTSGIRIGTAAVTTRG 367 (405)
T ss_dssp ---CSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECC------TT---CS-SC-------TTTCSEEEEECHHHHHTT
T ss_pred ---CCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcC------cc---cc-CC-------CCCCCceEEeeeeeeecC
Confidence 135788888863111234555556555666665532 10 00 00 0124679999995
Q ss_pred ---CCHHHHHHHHHHHHH
Q 009604 515 ---EDFEDLKADVLQALH 529 (531)
Q Consensus 515 ---E~~edli~dL~~AL~ 529 (531)
|+.+.+++.|.++++
T Consensus 368 ~~~~~i~~~~~~l~~~~~ 385 (405)
T 2vi8_A 368 FGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 344455555555543
No 171
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.82 E-value=8e-19 Score=183.89 Aligned_cols=198 Identities=14% Similarity=0.103 Sum_probs=135.3
Q ss_pred CCcEEE--eCChHHHHHHHHH--HhccCC-----CEEEEcCCCccchHHHHHhhcccCCcE-EEEeCC---C----CHHH
Q 009604 215 AESTVI--MASGMSASTVMLL--ALVPAG-----GHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDP---A----DMEG 277 (531)
Q Consensus 215 ~e~~i~--~sSG~~Ai~~al~--all~pG-----D~VIv~~~~y~~t~~~~~~~l~~~Gi~-v~~vd~---~----d~e~ 277 (531)
.+++++ +++|++|+.+++. .++.+| |+|+++.+.|.+....+ ...|++ +..++. . |+++
T Consensus 97 ~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 97 EKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVF----TTAGFKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHH----HHTTCSCEEEEECEETTTTEECHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHH----HHcCCceeEEEeeecCCCCccCHHH
Confidence 367888 8888899999854 556899 99999999999865433 345666 666654 2 7899
Q ss_pred HHHhccCC--CcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc----c--c---cc-c-CCcEE
Q 009604 278 LEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K--A---LS-L-GADLV 341 (531)
Q Consensus 278 Le~al~~~--~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~----~--~---l~-~-gaDiv 341 (531)
|++++++. ++++|++++|+||||.+++ +++|.++|+++|++||+|++|...... . + +. . ..+++
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFC 252 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEE
Confidence 99988641 4789999999999999976 568999999999999999997654221 1 1 11 1 23488
Q ss_pred EECCccccccCCCceEEEEEe---ChHH----HHHHHHHhhhcCCCchHHHHHHHHHHHH----------HHHHHHHHHH
Q 009604 342 LHSATKFIGGHNDVLAGSISG---SGKL----VTQIRNLHHVLGGALNPNAAYLIIRGMK----------TLHLRVQQQN 404 (531)
Q Consensus 342 v~S~sK~lgg~g~v~gG~iv~---~~~l----i~~l~~~~~~~G~~~s~~~a~l~l~~L~----------tl~~r~~~~~ 404 (531)
+.|+||.+++.|.+ .|++++ ++++ ++.+...........++...+.+...++ .+....++..
T Consensus 253 ~~s~sK~~~~~G~r-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (412)
T 1ajs_A 253 AQSFSKNFGLYNER-VGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRIL 331 (412)
T ss_dssp EEECTTTSCCGGGC-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccCCCCcc-eEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHH
Confidence 99999999987754 577777 7764 3444442222222223333333333333 2334445556
Q ss_pred HHHHHHHHHHHcC
Q 009604 405 STALRMAKILEAH 417 (531)
Q Consensus 405 ~na~~La~~L~~~ 417 (531)
++.+.+.+.|++.
T Consensus 332 ~~~~~l~~~L~~~ 344 (412)
T 1ajs_A 332 SMRSELRARLEAL 344 (412)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 7777888888765
No 172
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.81 E-value=5.8e-19 Score=188.29 Aligned_cols=201 Identities=13% Similarity=0.115 Sum_probs=138.4
Q ss_pred CcEEE--eCChHHHHHH--HHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---C-----CHHHHHHhcc
Q 009604 216 ESTVI--MASGMSASTV--MLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---A-----DMEGLEAALN 283 (531)
Q Consensus 216 e~~i~--~sSG~~Ai~~--al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---~-----d~e~Le~al~ 283 (531)
+++++ +++|++|+.+ .+.+++.+||+|+++.|+|......++..++..|.++..++. . |+++|+++++
T Consensus 118 ~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~ 197 (448)
T 3meb_A 118 GRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQ 197 (448)
T ss_dssp TCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHH
Confidence 56777 8888899987 556778999999999999998766554233366777666653 2 7899999987
Q ss_pred C--CCcEEEEEeCCCCCCCcccCH---HHHHHHHHhcCCEEEEeCCCCCCcccc------cc----ccCC-cEEEECCcc
Q 009604 284 N--NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQK------AL----SLGA-DLVLHSATK 347 (531)
Q Consensus 284 ~--~~tklV~lesP~NPtG~v~dl---~~I~~la~~~gi~lIvD~a~a~~~~~~------~l----~~ga-Divv~S~sK 347 (531)
+ .++++|++++|+||||.+++. ++|+++|+++|+++|+|++|....... .+ ..+. .+++.|+||
T Consensus 198 ~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 277 (448)
T 3meb_A 198 SAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSK 277 (448)
T ss_dssp HSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTT
T ss_pred hCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccc
Confidence 3 247899999999999999875 558999999999999999987543211 01 2233 478999999
Q ss_pred ccccCCCceEEEE--Ee---------Ch----HHHHHHHHHhhhcCCCchHHHHHHHHHHH----------HHHHHHHHH
Q 009604 348 FIGGHNDVLAGSI--SG---------SG----KLVTQIRNLHHVLGGALNPNAAYLIIRGM----------KTLHLRVQQ 402 (531)
Q Consensus 348 ~lgg~g~v~gG~i--v~---------~~----~li~~l~~~~~~~G~~~s~~~a~l~l~~L----------~tl~~r~~~ 402 (531)
.++..|.++ |++ +. ++ ++++.+...........+...++.+...+ +.+....++
T Consensus 278 ~~g~~G~Ri-G~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~ 356 (448)
T 3meb_A 278 NFGLYGERI-GCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSAR 356 (448)
T ss_dssp TSCCGGGCC-EEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccc-eeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 999777654 554 44 34 45555554443333334444444333332 224444555
Q ss_pred HHHHHHHHHHHHHcC
Q 009604 403 QNSTALRMAKILEAH 417 (531)
Q Consensus 403 ~~~na~~La~~L~~~ 417 (531)
..++++.+.+.|+++
T Consensus 357 ~~~~r~~l~~~L~~~ 371 (448)
T 3meb_A 357 IHRMRSLLHASLAKR 371 (448)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 667778888888765
No 173
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.81 E-value=2.8e-19 Score=192.31 Aligned_cols=198 Identities=19% Similarity=0.209 Sum_probs=140.7
Q ss_pred CCCcEE-EeCChHHHHHHHHHHh----ccCCC-----EEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHH
Q 009604 214 GAESTV-IMASGMSASTVMLLAL----VPAGG-----HIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGL 278 (531)
Q Consensus 214 g~e~~i-~~sSG~~Ai~~al~al----l~pGD-----~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~L 278 (531)
|.+..+ ++++|++|+.++++++ .++|| +|+++.+.|+.+... +...|+++..++.+ |+++|
T Consensus 121 g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~----~~~~G~~vv~v~~~~~~~~d~~~L 196 (474)
T 1wyu_B 121 GMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPAT----ASMAGYQVREIPSGPEGEVDLEAL 196 (474)
T ss_dssp TCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHH----HHHTTCEEEEECBCTTSSBCHHHH
T ss_pred CCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHH----HHHCCCEEEEecCCCCCCcCHHHH
Confidence 444445 4577789988866554 36888 999999999876543 34568888888754 89999
Q ss_pred HHhccCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHhcCCEEEEeCCCCCCc--cccccccCCcEEEECCccccccC---
Q 009604 279 EAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVLHSATKFIGGH--- 352 (531)
Q Consensus 279 e~al~~~~tklV~lesP~NPtG~v-~dl~~I~~la~~~gi~lIvD~a~a~~~--~~~~l~~gaDivv~S~sK~lgg~--- 352 (531)
+++++++ |++|++++| ||+|.+ .|+++|+++|+++|+++|+|++|+.+. ..++..+|+|+++.|+||+++++
T Consensus 197 ~~~i~~~-t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~ 274 (474)
T 1wyu_B 197 KRELGPH-VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGG 274 (474)
T ss_dssp HHHCSTT-EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTT
T ss_pred HHhhCCC-ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCC
Confidence 9999874 999999998 689998 699999999999999999999986543 23444568999999999999854
Q ss_pred CCceEEEEEeChHHHHHHHH-Hh------------------hhcCCCchHHH---HHHHHH--HHHHHHHHHHHHHHHHH
Q 009604 353 NDVLAGSISGSGKLVTQIRN-LH------------------HVLGGALNPNA---AYLIIR--GMKTLHLRVQQQNSTAL 408 (531)
Q Consensus 353 g~v~gG~iv~~~~li~~l~~-~~------------------~~~G~~~s~~~---a~l~l~--~L~tl~~r~~~~~~na~ 408 (531)
|+..+|++++++++++.+.. .. +......+... ++..+. +.+.+....++..++++
T Consensus 275 gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~ 354 (474)
T 1wyu_B 275 GGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNAR 354 (474)
T ss_dssp SCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22336888888887665531 00 00001122222 222222 23445555677778889
Q ss_pred HHHHHHHcC
Q 009604 409 RMAKILEAH 417 (531)
Q Consensus 409 ~La~~L~~~ 417 (531)
++.+.|++.
T Consensus 355 ~l~~~L~~~ 363 (474)
T 1wyu_B 355 YLKELLKEK 363 (474)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 999999875
No 174
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.81 E-value=4.8e-19 Score=186.76 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=133.8
Q ss_pred cEEEeCChHHHHHHH--HHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----C---CHHHHHHhccC--C
Q 009604 217 STVIMASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A---DMEGLEAALNN--N 285 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~a--l~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~---d~e~Le~al~~--~ 285 (531)
+++++++|++|+.++ +.+++++||+|+++.|.|.+....+ +..|.++..++. . |+++|++++++ .
T Consensus 119 ~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 194 (420)
T 4f4e_A 119 VTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALF----DMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEP 194 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH----HHTTCCEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred EEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHH----HHcCCeEEEeeeeccccCccCHHHHHHHHHhCCC
Confidence 567777778999999 4567899999999999998865443 445777776654 2 79999999972 2
Q ss_pred CcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc-----cc-----cccCCcEEEECCccccccC
Q 009604 286 NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KA-----LSLGADLVLHSATKFIGGH 352 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~-----~~-----l~~gaDivv~S~sK~lgg~ 352 (531)
++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... .. ...+.++++.|+||.++..
T Consensus 195 ~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 274 (420)
T 4f4e_A 195 GTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLY 274 (420)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCc
Confidence 4899999999999999976 568888899999999999998654321 01 1235679999999999977
Q ss_pred CCceEEEEE---eChHHHHHHH----HHhhhcCCCchHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 009604 353 NDVLAGSIS---GSGKLVTQIR----NLHHVLGGALNPNAAYLIIRGM----------KTLHLRVQQQNSTALRMAKILE 415 (531)
Q Consensus 353 g~v~gG~iv---~~~~li~~l~----~~~~~~G~~~s~~~a~l~l~~L----------~tl~~r~~~~~~na~~La~~L~ 415 (531)
|.+ .|+++ .++++++.+. ..........+...++.+...+ +.+....++..++++.+.+.|+
T Consensus 275 G~R-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 353 (420)
T 4f4e_A 275 GER-VGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLK 353 (420)
T ss_dssp GGC-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 45543 2456555432 2221112222333322222212 2244445566677888888888
Q ss_pred cC
Q 009604 416 AH 417 (531)
Q Consensus 416 ~~ 417 (531)
++
T Consensus 354 ~~ 355 (420)
T 4f4e_A 354 AA 355 (420)
T ss_dssp HT
T ss_pred hc
Confidence 75
No 175
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.80 E-value=1.2e-18 Score=185.70 Aligned_cols=281 Identities=17% Similarity=0.174 Sum_probs=172.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc----CCCE---EEEcCCCccchHHHHHhhcccCCcEEEEeC---------------
Q 009604 214 GAESTVIMASGMSASTVMLLALVP----AGGH---IVTTTDCYRKTRIFIETVLPKMGITATVID--------------- 271 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~----pGD~---VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd--------------- 271 (531)
+.+++++++||++|+.+++.++++ +||+ |+++.+.|..+...+ ...|.++..++
T Consensus 90 ~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~ 165 (467)
T 1ax4_A 90 NYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV----ELNGCKAINIVTEKAFDSETYDDWKG 165 (467)
T ss_dssp CCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH----HHTTCEEEECBCGGGGCTTSCCTTTT
T ss_pred CCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHH----hccCCceecccccccccccccCCccc
Confidence 567899999999999999999988 9998 888844444433333 23355554331
Q ss_pred CCCHHHHHHhccC---CCcEEEEEeCCCCCC-CcccC---HHHHHHHHHhcCCEEEEeCCCCC-----------Cc-ccc
Q 009604 272 PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT-----------PL-NQK 332 (531)
Q Consensus 272 ~~d~e~Le~al~~---~~tklV~lesP~NPt-G~v~d---l~~I~~la~~~gi~lIvD~a~a~-----------~~-~~~ 332 (531)
..|+++|++++++ .+|++|++++|+||+ |.+++ +++|.++|++||++||+|+++.. .. ...
T Consensus 166 ~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~ 245 (467)
T 1ax4_A 166 DFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT 245 (467)
T ss_dssp CBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCC
T ss_pred ccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCc
Confidence 1378999999974 148999999999999 78765 67899999999999999998543 11 111
Q ss_pred ccc------cCCcEEEECCccccccCCCceEEEEEeC-h-HHHHHHHHHhhhcCC-----CchHHHHHHHHHHHHHHH--
Q 009604 333 ALS------LGADLVLHSATKFIGGHNDVLAGSISGS-G-KLVTQIRNLHHVLGG-----ALNPNAAYLIIRGMKTLH-- 397 (531)
Q Consensus 333 ~l~------~gaDivv~S~sK~lgg~g~v~gG~iv~~-~-~li~~l~~~~~~~G~-----~~s~~~a~l~l~~L~tl~-- 397 (531)
... ..+|+++.|+||.++.+ +||+++++ + ++++.+......+++ ..+......+..+++.+.
T Consensus 246 ~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 322 (467)
T 1ax4_A 246 IKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEE 322 (467)
T ss_dssp HHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCH
T ss_pred hhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhh
Confidence 111 24789999999998754 36888887 6 788877654432111 112211111112343322
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEE-------EcCCHHHHHHHHHHc-CCC
Q 009604 398 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE-------VDGDLTATIKFIDAL-KIP 469 (531)
Q Consensus 398 ~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~-------l~g~~~~~~~fl~~L-~~~ 469 (531)
.++++..++++.+.+.|++ +++. +..|. .|..+++. ++........|.+.| +..
T Consensus 323 ~~~~~~~~~~~~l~~~L~~-~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 384 (467)
T 1ax4_A 323 EYLHYRIGQVKYLGDRLRE-AGIP-IQYPT----------------GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLES 384 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCC-BCSSC----------------CSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh-CCCC-cccCC----------------CceEEEEehhhhccccccCCCCHHHHHHHHHHhc
Confidence 2455556778888888877 3432 11121 24566666 321112356677777 666
Q ss_pred Cccccc-CCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHHh
Q 009604 470 YIAPSF-GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE-DFEDLKADVLQALHA 530 (531)
Q Consensus 470 ~iavS~-Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE-~~edli~dL~~AL~~ 530 (531)
++.++. |... ....|. + .. ......+.||||++.. .+++.++.+.++|++
T Consensus 385 gv~v~~~g~~~-~~~~~~---~-g~------~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~ 436 (467)
T 1ax4_A 385 GVRAVEIGSFL-LGRDPA---T-GE------QKHADMEFMRLTIARRVYTNDHMDYIADALIG 436 (467)
T ss_dssp CEECEEESHHH-HCBCTT---T-CS------BCCCSCCEEEEECCTTSSCHHHHHHHHHHHHT
T ss_pred CceeeecCccc-cccccc---c-cc------ccccccceEEEecccccCCHHHHHHHHHHHHH
Confidence 777766 4321 000000 0 00 0001247999999943 556666666666543
No 176
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.80 E-value=2.4e-18 Score=182.96 Aligned_cols=194 Identities=19% Similarity=0.168 Sum_probs=135.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCc-cchHHHHHhhcccCCcEEEEeCC---------------CCHHH
Q 009604 214 GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY-RKTRIFIETVLPKMGITATVIDP---------------ADMEG 277 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y-~~t~~~~~~~l~~~Gi~v~~vd~---------------~d~e~ 277 (531)
+.++++++++|++|+.+++.+++++|| +++.+.| +.+.. .+...|.++.+++. .|+++
T Consensus 89 ~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~----~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~ 162 (456)
T 2ez2_A 89 GFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRY----HQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKK 162 (456)
T ss_dssp CCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHH----HHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHH
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHH----HHHHcCCEEEEecccccccccccccccCCCCHHH
Confidence 667899999999999999999999999 6777888 44332 33445777777643 27899
Q ss_pred HHHhccCCC---cEEEEEeCCCC-CCCcccC---HHHHHHHHHhcCCEEEEeCCCCCC-----------ccccc------
Q 009604 278 LEAALNNNN---VSLFFTESPTN-PFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP-----------LNQKA------ 333 (531)
Q Consensus 278 Le~al~~~~---tklV~lesP~N-PtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~-----------~~~~~------ 333 (531)
|++++++++ +++|++++|+| |+|.+.+ +++|.++|+++|++||+|++|+.+ +....
T Consensus 163 l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~ 242 (456)
T 2ez2_A 163 LQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVH 242 (456)
T ss_dssp HHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHH
T ss_pred HHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhh
Confidence 999997631 39999999999 9999987 999999999999999999998652 11111
Q ss_pred -cccCCcEEEECCccccccCCCceEEEEEe-ChHHHHHHHHHhhhc-C------CCchHHHHHHHHHHHHHH-HHHHHHH
Q 009604 334 -LSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL-G------GALNPNAAYLIIRGMKTL-HLRVQQQ 403 (531)
Q Consensus 334 -l~~gaDivv~S~sK~lgg~g~v~gG~iv~-~~~li~~l~~~~~~~-G------~~~s~~~a~l~l~~L~tl-~~r~~~~ 403 (531)
.....|+++.|++|+++ .+ ++|++++ ++++++.++...... | .......+ ++...++.+ ...+++.
T Consensus 243 ~~~~~~d~~~~S~kk~~~-~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~a~~~~~~~~~~~~~~~ 318 (456)
T 2ez2_A 243 EMFSYADGCTMSGKKDCL-VN--IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEA-MAIGLREAMQYEYIEHR 318 (456)
T ss_dssp HHHTTCSEEEEETTTTTC-CS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHH-HHHHHHHHTCHHHHHHH
T ss_pred hhcccCCEEEEeCcccCC-CC--ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHH-HHHHHHHHhHHHHHHHH
Confidence 12347888889888865 33 3789988 678888776544321 1 11112222 122223333 3455666
Q ss_pred HHHHHHHHHHHHcC
Q 009604 404 NSTALRMAKILEAH 417 (531)
Q Consensus 404 ~~na~~La~~L~~~ 417 (531)
.++.+.+.+.|++.
T Consensus 319 ~~~~~~l~~~L~~~ 332 (456)
T 2ez2_A 319 VKQVRYLGDKLKAA 332 (456)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC
Confidence 67777888888763
No 177
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.80 E-value=1.6e-18 Score=181.74 Aligned_cols=195 Identities=16% Similarity=0.156 Sum_probs=133.3
Q ss_pred EEeCChHHHHHHH---HHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhcc--CCC
Q 009604 219 VIMASGMSASTVM---LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALN--NNN 286 (531)
Q Consensus 219 i~~sSG~~Ai~~a---l~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~--~~~ 286 (531)
+.+.+|++++.++ +.+++++||+|+++.|.|.+....+ +..|.++..++. .|+++|+++++ +.+
T Consensus 108 ~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 183 (409)
T 4eu1_A 108 CQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIF----AKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEG 183 (409)
T ss_dssp EEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHH----HHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTT
T ss_pred eecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHH----HHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCC
Confidence 3477777777764 4456789999999999998865443 446888877764 27899999986 224
Q ss_pred cEEEEEeCCCCCCCcccCH---HHHHHHHHhcCCEEEEeCCCCCCcccc------c----ccc-CCcEEEECCccccccC
Q 009604 287 VSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQK------A----LSL-GADLVLHSATKFIGGH 352 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl---~~I~~la~~~gi~lIvD~a~a~~~~~~------~----l~~-gaDivv~S~sK~lgg~ 352 (531)
++++++++|+||||.+++. ++|+++|+++|+++|+|++|....... + ... ...+++.|+||.++.+
T Consensus 184 ~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 263 (409)
T 4eu1_A 184 SVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLY 263 (409)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCG
T ss_pred cEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCc
Confidence 6788889999999999985 458899999999999999987543211 1 112 2347899999999977
Q ss_pred CCceEEE--EEeChH----HHHHHHHHhhhcCCCchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHc
Q 009604 353 NDVLAGS--ISGSGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK----------TLHLRVQQQNSTALRMAKILEA 416 (531)
Q Consensus 353 g~v~gG~--iv~~~~----li~~l~~~~~~~G~~~s~~~a~l~l~~L~----------tl~~r~~~~~~na~~La~~L~~ 416 (531)
|.++|.+ ++++++ +++.++..........+...++.+...++ .+....++..++++.+.+.|++
T Consensus 264 G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 343 (409)
T 4eu1_A 264 GHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKA 343 (409)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7654433 466777 55555554333333334444444333333 2344455666778888888876
Q ss_pred C
Q 009604 417 H 417 (531)
Q Consensus 417 ~ 417 (531)
.
T Consensus 344 ~ 344 (409)
T 4eu1_A 344 C 344 (409)
T ss_dssp T
T ss_pred c
Confidence 5
No 178
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.80 E-value=3.9e-18 Score=185.41 Aligned_cols=202 Identities=11% Similarity=0.105 Sum_probs=146.4
Q ss_pred CcEEEeCChHHHHHHHHHHhcc--------------CCCEEEEcCCCccchHHHHHhhcccCCc---EEEEeCCC-----
Q 009604 216 ESTVIMASGMSASTVMLLALVP--------------AGGHIVTTTDCYRKTRIFIETVLPKMGI---TATVIDPA----- 273 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~--------------pGD~VIv~~~~y~~t~~~~~~~l~~~Gi---~v~~vd~~----- 273 (531)
+..+++++|++|+..++.++.. ++++|+++...|.+....+ +..|+ ++..++.+
T Consensus 155 ~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~----~~~g~g~~~~~~v~~d~~~~~ 230 (511)
T 3vp6_A 155 GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAG----AALGFGTDNVILIKCNERGKI 230 (511)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHH----HHTTSCGGGEEEECBCTTSCB
T ss_pred CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHH----HHcCCCCCcEEEeecCCCCcc
Confidence 4788899999999988877654 5789999999998866544 33344 67777643
Q ss_pred CHHHHHHhccCC-----CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccc----c---ccCCcEE
Q 009604 274 DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA----L---SLGADLV 341 (531)
Q Consensus 274 d~e~Le~al~~~-----~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~----l---~~gaDiv 341 (531)
|+++|+++|++. ++++|++++|+|++|.+.|+++|+++|++||+++++|++|+.+....+ . ..++|++
T Consensus 231 d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv 310 (511)
T 3vp6_A 231 IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSV 310 (511)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEE
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEE
Confidence 899999999652 178999999999999999999999999999999999999987544211 1 1257999
Q ss_pred EECCccccccCCCceEEEEEeChHHHHHHHHHhh--h-------------------cCCCchHHHHHHHHH--HHHHHHH
Q 009604 342 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--V-------------------LGGALNPNAAYLIIR--GMKTLHL 398 (531)
Q Consensus 342 v~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~--~-------------------~G~~~s~~~a~l~l~--~L~tl~~ 398 (531)
+.++||+++++.+. +++++.+++++........ . .+........|.+++ +.+.+..
T Consensus 311 ~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~ 389 (511)
T 3vp6_A 311 TWNPHKMMGVLLQC-SAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFEN 389 (511)
T ss_dssp EECTTSTTCCCSCC-EEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EECcccccCCCcCe-EEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHH
Confidence 99999998876542 4444555555554321100 0 011122344444443 5567788
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceE
Q 009604 399 RVQQQNSTALRMAKILEAHPKVKR 422 (531)
Q Consensus 399 r~~~~~~na~~La~~L~~~p~v~~ 422 (531)
++++..++++++.+.|++.|+++.
T Consensus 390 ~~~~~~~~a~~l~~~L~~~pg~~l 413 (511)
T 3vp6_A 390 QINKCLELAEYLYAKIKNREEFEM 413 (511)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEE
Confidence 889999999999999999888753
No 179
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.80 E-value=1.9e-18 Score=179.61 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=134.9
Q ss_pred CCcEEE--eCChHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---C----CHHHHHHhcc
Q 009604 215 AESTVI--MASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---A----DMEGLEAALN 283 (531)
Q Consensus 215 ~e~~i~--~sSG~~Ai~~al~al--l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---~----d~e~Le~al~ 283 (531)
.+++++ +++|++|+.+++..+ +.+||+|+++.+.|.+.... ++..|.++..++. . |+++|+++++
T Consensus 92 ~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 167 (396)
T 2q7w_A 92 DKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSV----FNSAGLEVREYAYYDAENHTLDFDALINSLN 167 (396)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHH----HHHTTCEEEEEECEETTTTEECHHHHHHHHT
T ss_pred cccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHH----HHHcCCceEEEecccCCCCCcCHHHHHHHHH
Confidence 356766 788889999998765 46999999999999986543 3445777777765 3 7999999987
Q ss_pred CC--CcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc---c--c---c-cc-CCcEEEECCccc
Q 009604 284 NN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---K--A---L-SL-GADLVLHSATKF 348 (531)
Q Consensus 284 ~~--~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~---~--~---l-~~-gaDivv~S~sK~ 348 (531)
+. ++++|++++|+||||.+++ +++|.++|+++|++||+|++|...... . + + .. ..++++.|+||.
T Consensus 168 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 247 (396)
T 2q7w_A 168 EAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXN 247 (396)
T ss_dssp TCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTT
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccc
Confidence 52 3788999999999999986 557899999999999999998754221 0 1 1 12 245889999999
Q ss_pred cccCCCceEEEEEe---ChH----HHHHHHHHhhhcCCCchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 009604 349 IGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK----------TLHLRVQQQNSTALRMA 411 (531)
Q Consensus 349 lgg~g~v~gG~iv~---~~~----li~~l~~~~~~~G~~~s~~~a~l~l~~L~----------tl~~r~~~~~~na~~La 411 (531)
++.+|.+ .|++++ +++ +++.+...........++...+.+...++ .+....++..++++.+.
T Consensus 248 ~~~~G~r-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 326 (396)
T 2q7w_A 248 FGLYNER-VGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326 (396)
T ss_dssp TTCGGGC-CEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred ccccccc-cceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9866644 566665 554 44444432222222334544444444432 22233344556777788
Q ss_pred HHHHcC
Q 009604 412 KILEAH 417 (531)
Q Consensus 412 ~~L~~~ 417 (531)
+.|+++
T Consensus 327 ~~L~~~ 332 (396)
T 2q7w_A 327 NTLQEK 332 (396)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 888765
No 180
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.80 E-value=2.3e-18 Score=180.63 Aligned_cols=198 Identities=11% Similarity=0.088 Sum_probs=134.3
Q ss_pred CCcEEE--eCChHHHHHHH--HHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhcc
Q 009604 215 AESTVI--MASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALN 283 (531)
Q Consensus 215 ~e~~i~--~sSG~~Ai~~a--l~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~ 283 (531)
.+++++ +++|++|+.++ +..++.+||+|+++.++|.+.... ++..|+++..++. .|+++|+++++
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 171 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAI----FENQGLKTATYPYWANETKSLDLNGFLNAIQ 171 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHH----HHTTTCCEEEEECEETTTTEECHHHHHHHHH
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHH----HHHcCceEEEEeeecCCCCccCHHHHHHHHH
Confidence 456777 88888999988 345567999999999999986543 3445777766654 27899999886
Q ss_pred CC--CcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc----c--cc----ccC----CcEEEEC
Q 009604 284 NN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K--AL----SLG----ADLVLHS 344 (531)
Q Consensus 284 ~~--~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~----~--~l----~~g----aDivv~S 344 (531)
+. +++++++++|+||||.+++ +++|.++|+++|+++|+|++|...... . ++ ..+ .++++.|
T Consensus 172 ~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 251 (412)
T 1yaa_A 172 KAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQS 251 (412)
T ss_dssp HSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEE
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEec
Confidence 53 2455666999999999986 567888999999999999998643211 1 11 123 4688999
Q ss_pred CccccccCCCceEEEEE--e-----ChH----HHHHHHHHhhhcCCCchHHHHHHHHHHHH----------HHHHHHHHH
Q 009604 345 ATKFIGGHNDVLAGSIS--G-----SGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK----------TLHLRVQQQ 403 (531)
Q Consensus 345 ~sK~lgg~g~v~gG~iv--~-----~~~----li~~l~~~~~~~G~~~s~~~a~l~l~~L~----------tl~~r~~~~ 403 (531)
+||.+++.|.+ .|+++ + +++ +++.+...........+....+.+...++ .+....++.
T Consensus 252 ~sK~~~~~Glr-iG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (412)
T 1yaa_A 252 FAKNAGMYGER-VGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRI 330 (412)
T ss_dssp CTTTSCCGGGC-EEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCCc-ceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999976754 56766 6 555 66666653332222334443333333333 233444555
Q ss_pred HHHHHHHHHHHHcC
Q 009604 404 NSTALRMAKILEAH 417 (531)
Q Consensus 404 ~~na~~La~~L~~~ 417 (531)
.++++.+.+.|+++
T Consensus 331 ~~~~~~l~~~L~~~ 344 (412)
T 1yaa_A 331 TKMRHALRDHLVKL 344 (412)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 56777788888765
No 181
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.80 E-value=8.4e-19 Score=187.01 Aligned_cols=197 Identities=19% Similarity=0.153 Sum_probs=137.4
Q ss_pred CCcEEE-eCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHh-hcccCCcEEEEeC------CCCHHHHHHhccCCC
Q 009604 215 AESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVID------PADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~~i~-~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~-~l~~~Gi~v~~vd------~~d~e~Le~al~~~~ 286 (531)
.+.+.+ ++||++|+..++.+++++||+|+++.+.|.+.+..... .+...+..+..++ ..|+++|++++++.+
T Consensus 106 ~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 185 (447)
T 3h7f_A 106 AEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFR 185 (447)
T ss_dssp CSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHC
T ss_pred CCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcC
Confidence 344555 89999999999999999999999999998762210000 0111123333443 248999999985434
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCc-----cccccccCCcEEEECCccccccCCCceEEEEE
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLVLHSATKFIGGHNDVLAGSIS 361 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~-----~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv 361 (531)
+++|++++|+||++. ++++|.++|+++|++||+|+++..++ ...+. .++|+++.|+||+++|+ .+|+++
T Consensus 186 ~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~---~gG~i~ 259 (447)
T 3h7f_A 186 PKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGG---RSGLIV 259 (447)
T ss_dssp CSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCC---SCEEEE
T ss_pred CeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCC---CeEEEE
Confidence 899999999998876 99999999999999999999975432 22233 25899999999999865 379999
Q ss_pred eChHHHHHHHHHhh--hcCCCchHHHHHH--HHHH-H-HHHHHHHHHHHHHHHHHHHHHHcC
Q 009604 362 GSGKLVTQIRNLHH--VLGGALNPNAAYL--IIRG-M-KTLHLRVQQQNSTALRMAKILEAH 417 (531)
Q Consensus 362 ~~~~li~~l~~~~~--~~G~~~s~~~a~l--~l~~-L-~tl~~r~~~~~~na~~La~~L~~~ 417 (531)
+++++++.+..... ..|+...+..+.+ ++.. + +.+..+.++..++++++.+.|++.
T Consensus 260 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (447)
T 3h7f_A 260 GKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP 321 (447)
T ss_dssp ECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred ECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988888776433 2233332222221 1111 1 245566777888999999998764
No 182
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.80 E-value=3.4e-18 Score=179.70 Aligned_cols=265 Identities=14% Similarity=0.172 Sum_probs=166.6
Q ss_pred CcEEEeCChHHHHHHHHH---HhccCCCEEEEcCCCccchHHHHHhhcc-------cCCc---EEEEeCCC---------
Q 009604 216 ESTVIMASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRIFIETVLP-------KMGI---TATVIDPA--------- 273 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~---all~pGD~VIv~~~~y~~t~~~~~~~l~-------~~Gi---~v~~vd~~--------- 273 (531)
++++++++|++|+.+++. ++.++| +|++.++.|++.......... .++. .+..++..
T Consensus 103 ~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 181 (426)
T 1sff_A 103 KKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISED 181 (426)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHH
T ss_pred cEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchH
Confidence 678888888999999988 677776 888989999775432212211 1111 13344432
Q ss_pred -CHHHHHHhccC----CCcEEEEEe-CCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCcc------ccccccC
Q 009604 274 -DMEGLEAALNN----NNVSLFFTE-SPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLG 337 (531)
Q Consensus 274 -d~e~Le~al~~----~~tklV~le-sP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~~------~~~l~~g 337 (531)
|+++|++++++ .++++|+++ +++| +|.+.+ +++|.++|+++|++||+||+|..... .......
T Consensus 182 ~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 260 (426)
T 1sff_A 182 DAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVA 260 (426)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSC
T ss_pred HHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCC
Confidence 68899988862 247888885 4566 997777 99999999999999999999874211 1122233
Q ss_pred CcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 009604 338 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILE 415 (531)
Q Consensus 338 aDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~La~~L~ 415 (531)
+|++ |++|.+++ | ...|++++++++++.+...........++.....+...++.+.. ..++..++.+.+.+.|+
T Consensus 261 ~di~--s~sK~~~~-G-lriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~ 336 (426)
T 1sff_A 261 PDLT--TFAKSIAG-G-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLL 336 (426)
T ss_dssp CSEE--EECGGGGT-S-SCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCEE--EEcccccC-C-CceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 6665 78899997 5 44688888888777664322222223456655555555554432 34555566677777665
Q ss_pred cC----CCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcC-------CHHHHHHHHHHcCCCCcccccCCccccccc
Q 009604 416 AH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-------DLTATIKFIDALKIPYIAPSFGGCESIVDQ 484 (531)
Q Consensus 416 ~~----p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g-------~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~ 484 (531)
+. +.+.. ..+.|++++|++++ ......++.+.|...++.+..|+.
T Consensus 337 ~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~------ 392 (426)
T 1sff_A 337 AIAEKHPEIGD------------------VRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP------ 392 (426)
T ss_dssp HHHHTCTTEEE------------------EEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST------
T ss_pred HHHHhCCCeEE------------------EEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC------
Confidence 42 22111 11236789999952 123456677777555655554421
Q ss_pred CccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 485 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 485 p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
.++.|||++++..+++.++.+.++|+
T Consensus 393 -------------------~~~~iRi~~~~~~~~~~i~~~~~~l~ 418 (426)
T 1sff_A 393 -------------------YYNVLRILVPLTIEDAQIRQGLEIIS 418 (426)
T ss_dssp -------------------TSCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred -------------------CCCEEEEECCccCCHHHHHHHHHHHH
Confidence 14789999986665555555555543
No 183
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.79 E-value=3e-18 Score=184.40 Aligned_cols=228 Identities=16% Similarity=0.169 Sum_probs=156.5
Q ss_pred CcEEEeCChHHHHHHHHHHhccC---------CC----------EEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 009604 216 ESTVIMASGMSASTVMLLALVPA---------GG----------HIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 272 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~p---------GD----------~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---- 272 (531)
...+++++|++|+.+++.++..+ || .|+++.+.|.+.... ++..|++++.++.
T Consensus 140 ~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~----~~~~G~~v~~v~~d~~~ 215 (486)
T 1js3_A 140 GGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERA----GLIGGVKLKAIPSDGKF 215 (486)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHH----HHHHTCEEEEECCCTTS
T ss_pred CCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHH----HHhCCCceEEeecCCCC
Confidence 45789999999999988765321 43 378899999875543 3445888888875
Q ss_pred -CCHHHHHHhccCCCc------EEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcccc----cc--c-cCC
Q 009604 273 -ADMEGLEAALNNNNV------SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK----AL--S-LGA 338 (531)
Q Consensus 273 -~d~e~Le~al~~~~t------klV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~----~l--~-~ga 338 (531)
.|+++|+++|+++ + .+|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+.... .. . .++
T Consensus 216 ~~d~~~L~~~i~~~-~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~a 294 (486)
T 1js3_A 216 AMRASALQEALERD-KAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFA 294 (486)
T ss_dssp CCCHHHHHHHHHHH-HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGC
T ss_pred CCCHHHHHHHHHHH-HhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCcccc
Confidence 3899999999764 5 389999999999999999999999999999999999998643211 11 1 268
Q ss_pred cEEEECCccccccCCCceEEEEEeCh-HH-HHHHH---HHhhh-----------------cCCCchHHHHHHHHH--HHH
Q 009604 339 DLVLHSATKFIGGHNDVLAGSISGSG-KL-VTQIR---NLHHV-----------------LGGALNPNAAYLIIR--GMK 394 (531)
Q Consensus 339 Divv~S~sK~lgg~g~v~gG~iv~~~-~l-i~~l~---~~~~~-----------------~G~~~s~~~a~l~l~--~L~ 394 (531)
|.++.++||+++++.+ +|+++.++ ++ .+.+. .+... .+........|.+++ +.+
T Consensus 295 dsi~~~~hK~~~~p~~--~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~ 372 (486)
T 1js3_A 295 DSFNFNPHKWLLVNFD--CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVK 372 (486)
T ss_dssp SEEEECHHHHSSCCSS--CEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHH
T ss_pred CeeEEchhhhcCCCcc--eEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHH
Confidence 9999999999986543 46666654 33 23221 01000 111223344444433 446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcC
Q 009604 395 TLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK 467 (531)
Q Consensus 395 tl~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~ 467 (531)
.+..++++..++++++.+.|++.|+++.+..| ..+++.|.+++......++.+.|.
T Consensus 373 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~v~f~~~~~~~~~~~l~~~L~ 428 (486)
T 1js3_A 373 GLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-----------------TLGLVCFRLKGSDGLNEALLERIN 428 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-----------------CSSEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-----------------ceeEEEEEecChHHHHHHHHHHHH
Confidence 67777888889999999999988876432212 246889998753323466666664
No 184
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.79 E-value=6.3e-18 Score=178.51 Aligned_cols=270 Identities=13% Similarity=0.070 Sum_probs=168.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc---c----CCCEEEEcCCCccchHHHHHhhcc------------cCCcEEEEeC---
Q 009604 214 GAESTVIMASGMSASTVMLLALV---P----AGGHIVTTTDCYRKTRIFIETVLP------------KMGITATVID--- 271 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all---~----pGD~VIv~~~~y~~t~~~~~~~l~------------~~Gi~v~~vd--- 271 (531)
+.++++++++|++|+.+++..+. + |||+|++..+.|++.......... ..++....++
T Consensus 102 ~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
T 1s0a_A 102 PLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSR 181 (429)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSB
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCccc
Confidence 45678899999999999988653 2 699999999988774322211111 0123333332
Q ss_pred ------CCCHHHHHHhccC--CCcEEEEEeCC-CCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc------ccc
Q 009604 272 ------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL------NQK 332 (531)
Q Consensus 272 ------~~d~e~Le~al~~--~~tklV~lesP-~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~------~~~ 332 (531)
..|+++|++++++ .++++|+++.+ +||+|.+++ +++|.++|+++|++||+||+|.... ...
T Consensus 182 ~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~ 261 (429)
T 1s0a_A 182 MDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACE 261 (429)
T ss_dssp C-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred ccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhh
Confidence 2478999998872 24788887766 799998777 9999999999999999999986321 112
Q ss_pred ccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHh--h-hcC--CCchHHHHHHHHHHHHHHH--HHHHHHHH
Q 009604 333 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--H-VLG--GALNPNAAYLIIRGMKTLH--LRVQQQNS 405 (531)
Q Consensus 333 ~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~--~-~~G--~~~s~~~a~l~l~~L~tl~--~r~~~~~~ 405 (531)
......|++ |++|.+++ |-...|++++++++++.+.... . ..+ ...++..+..+...++.+. ...++..+
T Consensus 262 ~~~~~~d~~--t~sK~l~~-G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~ 338 (429)
T 1s0a_A 262 HAEIAPDIL--CLGKALTG-GTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAD 338 (429)
T ss_dssp GGTCCCSEE--EECGGGGT-SSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCCCCEE--EecccccC-CCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 223456776 57799986 3123688889988888776421 0 012 2234555555455555432 23455556
Q ss_pred HHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccC
Q 009604 406 TALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP 485 (531)
Q Consensus 406 na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p 485 (531)
+.+.+.+.|++... +|++. ...+.|++++|++++. .....+.+.|...++.++.
T Consensus 339 ~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~-~~~~~l~~~l~~~Gi~v~~---------- 392 (429)
T 1s0a_A 339 IEVQLREQLAPARD-----AEMVA----------DVRVLGAIGVVETTHP-VNMAALQKFFVEQGVWIRP---------- 392 (429)
T ss_dssp HHHHHHHHHGGGGG-----CTTEE----------EEEEETTEEEEEESSC-BCHHHHHHHHHHTTEECCC----------
T ss_pred HHHHHHHHHHHHhc-----CCCEE----------EEEEeeEEEEEEECCc-ccHHHHHHHHHHCCCEEec----------
Confidence 67777777765310 12110 0112467899998642 1234556665433443321
Q ss_pred ccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 486 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 486 ~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.++.||||+++..+++.++.+.++|++
T Consensus 393 ------------------~~~~iRis~~~~~t~e~i~~~~~~l~~ 419 (429)
T 1s0a_A 393 ------------------FGKLIYLMPPYIILPQQLQRLTAAVNR 419 (429)
T ss_dssp ------------------BTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ------------------cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 026899999987777777777766653
No 185
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.79 E-value=2.2e-18 Score=182.51 Aligned_cols=265 Identities=14% Similarity=0.088 Sum_probs=166.8
Q ss_pred CcEEEeCChHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhccc-----------CCcEEEEeCCC---------
Q 009604 216 ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPK-----------MGITATVIDPA--------- 273 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~al--l~pGD~VIv~~~~y~~t~~~~~~~l~~-----------~Gi~v~~vd~~--------- 273 (531)
++++++++|++|+..++..+ ..++++||+.++.|++.+......... ....+..++..
T Consensus 105 ~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (439)
T 3dxv_A 105 HKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGD 184 (439)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSH
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHH
Confidence 68999999999999999875 346678888888886644322111100 00011223332
Q ss_pred -CHHHHHHhcc---CCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCC------ccccccccCCc
Q 009604 274 -DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGAD 339 (531)
Q Consensus 274 -d~e~Le~al~---~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~------~~~~~l~~gaD 339 (531)
|+++|+++++ ..++++|++++++|++|.+.+ +++|.++|++||++||+||+|... ..........|
T Consensus 185 ~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~d 264 (439)
T 3dxv_A 185 AILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPD 264 (439)
T ss_dssp HHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCC
Confidence 5899999993 235899999999999999988 999999999999999999998632 11122233467
Q ss_pred EEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHc-
Q 009604 340 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEA- 416 (531)
Q Consensus 340 ivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~La~~L~~- 416 (531)
++ |++|.+++ |. ..|++++++++++.+......... .++..+..++..++.+. ..+++..++.+.+.+.|.+
T Consensus 265 i~--s~sK~~~~-G~-riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (439)
T 3dxv_A 265 IL--VLGKGLGG-GL-PLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSEL 339 (439)
T ss_dssp EE--EECGGGGT-TS-CCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred EE--EEcchhcC-Cc-ceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 66 78899996 44 468888988887766543222223 45665555555555432 2345555666666666553
Q ss_pred ---CCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEc-------CCHHHHHHHHHHcCCCCcccccCCcccccccCc
Q 009604 417 ---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD-------GDLTATIKFIDALKIPYIAPSFGGCESIVDQPA 486 (531)
Q Consensus 417 ---~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~-------g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~ 486 (531)
++.+..+ .+.|.++++++. ........|.+.|...++.+..|+
T Consensus 340 ~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------- 392 (439)
T 3dxv_A 340 AKRHPLIGDI------------------RGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVG--------- 392 (439)
T ss_dssp HHHCTTEEEE------------------EEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEES---------
T ss_pred HHhCCCeEEE------------------EEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecC---------
Confidence 3433221 235778888873 123456667776654454444331
Q ss_pred cccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009604 487 IMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 487 ~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL 528 (531)
..++.+||++++..+++.++.+.++|
T Consensus 393 ----------------~~~~~iRi~~~~~~t~e~i~~~l~~l 418 (439)
T 3dxv_A 393 ----------------MNGNVLEFTPPLTITETDIHKALDLL 418 (439)
T ss_dssp ----------------TTSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred ----------------CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 12478999988765554444444444
No 186
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.79 E-value=5e-19 Score=189.16 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=104.8
Q ss_pred CcEEEeCChH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--C---------CHHHHHHhcc
Q 009604 216 ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--A---------DMEGLEAALN 283 (531)
Q Consensus 216 e~~i~~sSG~-~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--~---------d~e~Le~al~ 283 (531)
++.+++++|+ +|+.+++.+++++||+|+++.++|.++...+.. .|+++.+++. + |+++| ++
T Consensus 72 ~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~----~G~~~~~v~~~~~~~~~~~~~~d~~~l---~~ 144 (446)
T 2x3l_A 72 YDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDI----SQQEGHFIETHQSPLTNHYNKVNLSRL---NN 144 (446)
T ss_dssp EEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHH----HTCCEEECEEEECTTTSSEEEEEC--------
T ss_pred CceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHH----cCCeEEEEeCeeccccCcCCCCCHHHH---cC
Confidence 3566777765 999999999999999999999999987755432 3555555443 1 45666 44
Q ss_pred CCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCc-----cccccccCCcEEEECCccccccCCCceEE
Q 009604 284 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLVLHSATKFIGGHNDVLAG 358 (531)
Q Consensus 284 ~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~-----~~~~l~~gaDivv~S~sK~lgg~g~v~gG 358 (531)
+ ++++|++++| |++|.+.|+++|.++|+++|++||+|++|+..+ .......|+|+++.|+||++++... +|
T Consensus 145 ~-~~~~v~~~~~-n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~~g--~g 220 (446)
T 2x3l_A 145 D-GHKLVVLTYP-NYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTM--GS 220 (446)
T ss_dssp ---CCEEEEESS-CTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHHHSSSCTT--CE
T ss_pred C-CceEEEEECC-CCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCccccccccc--cE
Confidence 4 4899999995 569999999999999999999999999987622 2334456899999999997765532 58
Q ss_pred EEEeChHHHH
Q 009604 359 SISGSGKLVT 368 (531)
Q Consensus 359 ~iv~~~~li~ 368 (531)
++++++++++
T Consensus 221 ~l~~~~~~i~ 230 (446)
T 2x3l_A 221 VLYIHKNAPY 230 (446)
T ss_dssp EEEEETTCTT
T ss_pred EEEEcCCcCC
Confidence 8887766543
No 187
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.79 E-value=2.8e-18 Score=179.46 Aligned_cols=268 Identities=11% Similarity=0.008 Sum_probs=162.9
Q ss_pred CcEEE-eCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeC
Q 009604 216 ESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 294 (531)
Q Consensus 216 e~~i~-~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~les 294 (531)
+++++ +++|++|+.+++.+++++| .+++....|........... .+|.++..++.++-......+++ +|++|++++
T Consensus 97 ~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~g~~~~~~i~~-~~~~v~~~~ 173 (398)
T 2fyf_A 97 YEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKN-PFVGEPIIITSDPGSAPEPQTDP-SVDVIAWAH 173 (398)
T ss_dssp CEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHC-TTSCCCEEEECCTTCCCCCCCCT-TCSEEEEES
T ss_pred ceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHh-CCCCceEEEecCCCCCCCccccC-CCCEEEEeC
Confidence 35676 7888899999999999987 23334444432111011111 12555555543210000112555 489999999
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHh
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH 374 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~ 374 (531)
|+||||.+.|+++|.++ +|++||+|++++.+...-.+. ++|+++.|+||+++++++ .|+++.++++++.++...
T Consensus 174 ~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~gg--~g~l~~~~~~~~~l~~~~ 247 (398)
T 2fyf_A 174 NETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDGG--LWLAIMSPAALSRIEAIA 247 (398)
T ss_dssp EETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCSS--EEEEEECHHHHHHHHHHH
T ss_pred cCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCCc--eEEEEECHHHHHHhhccc
Confidence 99999999999988887 899999999987653221122 489999999999998853 588888998887774321
Q ss_pred ----------------h-----hcCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCceEEeCCC
Q 009604 375 ----------------H-----VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAHPKVKRVHYPG 427 (531)
Q Consensus 375 ----------------~-----~~G~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~p~v~~V~~pg 427 (531)
. ....+.+....+.+..+++. +..+.++..++++.+.+.|++.+++. +..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~ 326 (398)
T 2fyf_A 248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTT-PFVTD 326 (398)
T ss_dssp HTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEE-ESCCS
T ss_pred ccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCce-eccCC
Confidence 0 00122333333333333332 44556667788888999998876653 22111
Q ss_pred CCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009604 428 LKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL 507 (531)
Q Consensus 428 l~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~l 507 (531)
|.. ..+.+++|.++.+ ....++.+.|...++.++.|. . ...++.
T Consensus 327 ----~~~--------~~~~~~~~~~~~~-~~~~~l~~~L~~~gI~v~~g~-------------~----------~~~~~~ 370 (398)
T 2fyf_A 327 ----PGL--------RSQVVGTIDFVDD-VDAGTVAKILRANGIVDTEPY-------------R----------KLGRNQ 370 (398)
T ss_dssp ----GGG--------BCSSEEEEEECTT-SCHHHHHHHHHHTTCBCCSCC-------------T----------TTCSSE
T ss_pred ----hhh--------cCCcEEEEECCCC-CCHHHHHHHHHHCCcEEecCc-------------c----------cCCCCE
Confidence 110 1234899999632 234566666654466555430 0 012578
Q ss_pred EEEEecCCCHHHHHHHHHHHHH
Q 009604 508 VRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 508 IRlSvGlE~~edli~dL~~AL~ 529 (531)
||||++...+++.++.+.++|+
T Consensus 371 iRis~~~~~t~e~i~~~~~~l~ 392 (398)
T 2fyf_A 371 LRVAMFPAVEPDDVSALTECVD 392 (398)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHH
Confidence 9999997666655665555554
No 188
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.78 E-value=1e-18 Score=181.80 Aligned_cols=198 Identities=15% Similarity=0.106 Sum_probs=132.3
Q ss_pred CCcEEE--eCChHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC---C----CHHHHHHhcc
Q 009604 215 AESTVI--MASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---A----DMEGLEAALN 283 (531)
Q Consensus 215 ~e~~i~--~sSG~~Ai~~al~all~--pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---~----d~e~Le~al~ 283 (531)
.+++++ +++|++|+.+++..+.. +||+|+++.++|.+....+ +..|.++..++. . |+++|+++++
T Consensus 89 ~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 164 (394)
T 2ay1_A 89 SETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIM----NFMGLPVQTYRYFDAETRGVDFEGMKADLA 164 (394)
T ss_dssp GGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH----HHHTCCEEEEECEETTTTEECHHHHHHHHH
T ss_pred cccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCceEEEecccccCCccCHHHHHHHHH
Confidence 356777 88888999999887754 9999999999999865443 334666666654 2 7899999987
Q ss_pred CC--CcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCcc--------cccc-ccC-CcEEEECCccc
Q 009604 284 NN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN--------QKAL-SLG-ADLVLHSATKF 348 (531)
Q Consensus 284 ~~--~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~--------~~~l-~~g-aDivv~S~sK~ 348 (531)
+. ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..... ...+ ..+ .++++.|+||.
T Consensus 165 ~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 244 (394)
T 2ay1_A 165 AAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKN 244 (394)
T ss_dssp TCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTT
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCC
Confidence 53 3678888999999999986 55788999999999999999875432 1111 123 34789999999
Q ss_pred cccCCCceEEEEEe---ChHHHHHHHH----HhhhcCCCchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 009604 349 IGGHNDVLAGSISG---SGKLVTQIRN----LHHVLGGALNPNAAYLIIRGMK----------TLHLRVQQQNSTALRMA 411 (531)
Q Consensus 349 lgg~g~v~gG~iv~---~~~li~~l~~----~~~~~G~~~s~~~a~l~l~~L~----------tl~~r~~~~~~na~~La 411 (531)
++.+|.+ .|++++ ++++++.+.. .........++..++.+...++ .+....++..++++.+.
T Consensus 245 ~~~~G~r-iG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 323 (394)
T 2ay1_A 245 FGIYRER-TGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp TTCGGGC-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCCc-cceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9866543 577776 6665544322 2111111223333333333332 23333445556667777
Q ss_pred HHHHcC
Q 009604 412 KILEAH 417 (531)
Q Consensus 412 ~~L~~~ 417 (531)
+.|+++
T Consensus 324 ~~L~~~ 329 (394)
T 2ay1_A 324 GELRDL 329 (394)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 189
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.78 E-value=1e-17 Score=178.16 Aligned_cols=269 Identities=13% Similarity=0.123 Sum_probs=167.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc--------CCCEEEEcCCCccchHH-HHHhhcc-----------cCCcEEEEeCC-
Q 009604 214 GAESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRI-FIETVLP-----------KMGITATVIDP- 272 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~--------pGD~VIv~~~~y~~t~~-~~~~~l~-----------~~Gi~v~~vd~- 272 (531)
+.++++++++|++|+.+++..+.. +||+||+.++.|++... .+. ... ..++....++.
T Consensus 109 ~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~-~~g~~~~~~~~~~~~~~~~~v~~~~~ 187 (449)
T 3a8u_X 109 NLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTS-LGGVNGNRKLFGQPMQDVDHLPHTLL 187 (449)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHH-HCCCHHHHTTTCCCSCSEEEECCCCC
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhh-ccCChhhccccCCCCCCCeEecCCcc
Confidence 356788999999999999987764 78999999999987532 221 111 01333322221
Q ss_pred -------CC--------HHHHHHhccC---CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCC-c
Q 009604 273 -------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-L 329 (531)
Q Consensus 273 -------~d--------~e~Le~al~~---~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~-~ 329 (531)
.| +++|++++++ .++++|+++..+|++|.+.+ +++|.++|++||++||+||++... .
T Consensus 188 ~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~ 267 (449)
T 3a8u_X 188 ASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGR 267 (449)
T ss_dssp GGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred ccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccc
Confidence 15 8999999872 24788888776688999888 999999999999999999998532 1
Q ss_pred c-----ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhh-------hcC--CCchHHHHHHHHHHHHH
Q 009604 330 N-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLG--GALNPNAAYLIIRGMKT 395 (531)
Q Consensus 330 ~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~-------~~G--~~~s~~~a~l~l~~L~t 395 (531)
. ........|++ |++|.+++ |....|++++++++++.+..... ..+ ...++..+..+...++.
T Consensus 268 ~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~ 344 (449)
T 3a8u_X 268 TGSMFGADSFGVTPDLM--CIAKQVTN-GAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCL 344 (449)
T ss_dssp TSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHH
T ss_pred cCcchhhhhcCCCCCEE--EEcccccC-CCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHH
Confidence 1 12222346866 67899986 31335677778888887765311 112 23356655555556655
Q ss_pred HHH--HHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCH--H--HHHHHHHHcCCC
Q 009604 396 LHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--T--ATIKFIDALKIP 469 (531)
Q Consensus 396 l~~--r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~--~--~~~~fl~~L~~~ 469 (531)
+.. ..++..++.+.+.+.|++.+.. |.. ....+.|.+++|++++.. . ....+.+.|...
T Consensus 345 ~~~~~~~~~~~~~~~~l~~~L~~l~~~-----~~~----------~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 409 (449)
T 3a8u_X 345 LQKENLVQSVAEVAPHFEKALHGIKGA-----KNV----------IDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKA 409 (449)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHTTTTS-----TTE----------EEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHhcC-----CCe----------EEEeeeEEEEEEEEecCcccccccHHHHHHHHHHC
Confidence 432 4556667777777777753211 110 001235789999996431 1 223455655433
Q ss_pred CcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 470 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 470 ~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
++.+..| .+.|||++++..+++.++.+.++|+
T Consensus 410 Gv~v~~~----------------------------g~~iRis~~~~~t~~~i~~~l~~l~ 441 (449)
T 3a8u_X 410 GFYVRFG----------------------------GDTLQFGPTFNSKPQDLDRLFDAVG 441 (449)
T ss_dssp TEECEEE----------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CcEEecC----------------------------CCEEEEECCCcCCHHHHHHHHHHHH
Confidence 4333321 1679999876665555555555543
No 190
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.78 E-value=7.4e-18 Score=182.15 Aligned_cols=240 Identities=15% Similarity=0.121 Sum_probs=144.8
Q ss_pred CCCc----E-EEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHH--HH-H-hhcccCCc--EEEEe--C----CCCHH
Q 009604 214 GAES----T-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRI--FI-E-TVLPKMGI--TATVI--D----PADME 276 (531)
Q Consensus 214 g~e~----~-i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~--~~-~-~~l~~~Gi--~v~~v--d----~~d~e 276 (531)
|.+. + ++++||++|+.+++.++++|||+|+++++.|++... .+ . ..+...|. .+..+ + ..|++
T Consensus 114 g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d 193 (490)
T 2a7v_A 114 DLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYN 193 (490)
T ss_dssp TCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHH
T ss_pred CCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHH
Confidence 6664 3 456699999999999999999999999999876421 10 0 01112232 22232 2 24899
Q ss_pred HHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCC-----ccccccccCCcEEEECCcccccc
Q 009604 277 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-----LNQKALSLGADLVLHSATKFIGG 351 (531)
Q Consensus 277 ~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~-----~~~~~l~~gaDivv~S~sK~lgg 351 (531)
+|++++++.++|+|+++.++|| .+.|+++|.++|+++|++|++|+++..+ ....++. ++|++++|+||+++|
T Consensus 194 ~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv~~S~hK~l~G 270 (490)
T 2a7v_A 194 QLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIVTTTTHKTLRG 270 (490)
T ss_dssp HHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCS
T ss_pred HHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-CCCEEEECCcccCcc
Confidence 9999986434899999888876 5679999999999999999999997532 2234444 699999999999977
Q ss_pred CCCceEEEEEeChH---------------HHHHHHHHhh--hcCCCchHHHHHH--HH-HHH-HHHHHHHHHHHHHHHHH
Q 009604 352 HNDVLAGSISGSGK---------------LVTQIRNLHH--VLGGALNPNAAYL--II-RGM-KTLHLRVQQQNSTALRM 410 (531)
Q Consensus 352 ~g~v~gG~iv~~~~---------------li~~l~~~~~--~~G~~~s~~~a~l--~l-~~L-~tl~~r~~~~~~na~~L 410 (531)
+. ||+++++++ +.++++.... ..|+......+.+ ++ ..+ +.+..+.++..+|++.|
T Consensus 271 p~---GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L 347 (490)
T 2a7v_A 271 AR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAM 347 (490)
T ss_dssp CS---CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred cc---chheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 64 788887653 4555554332 1122221211211 11 111 24456778888999999
Q ss_pred HHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccC
Q 009604 411 AKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG 476 (531)
Q Consensus 411 a~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~G 476 (531)
++.|.+. ++. +..++. -..++.+.+.........+.+.|+..++.++.+
T Consensus 348 ~~~L~~~-G~~-v~~~~t---------------~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~ 396 (490)
T 2a7v_A 348 ADALLER-GYS-LVSGGT---------------DNHLVLVDLRPKGLDGARAERVLELVSITANKN 396 (490)
T ss_dssp HHHHHHT-TCE-EGGGSC---------------SSSEEEEECTTTTCCHHHHHHHHHHTTEECEEE
T ss_pred HHHHHHc-CcE-EecCCC---------------CCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecC
Confidence 9999875 442 211111 135788887532112344455555557777754
No 191
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.78 E-value=1.7e-18 Score=183.98 Aligned_cols=258 Identities=12% Similarity=0.052 Sum_probs=162.7
Q ss_pred CCcEEEeCChHHHHHHHHHHh--------ccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCC
Q 009604 215 AESTVIMASGMSASTVMLLAL--------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNN 286 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~al--------l~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~ 286 (531)
++++++++++++++.+++.++ +++||+|+++.|.|......++ ..|+++.... .|+++|++++++ +
T Consensus 123 ~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~----~~g~~~~~~~-~d~~~l~~~~~~-~ 196 (427)
T 2hox_A 123 DRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK----YFDKKGYVWA-GNAANYVNVSNP-E 196 (427)
T ss_dssp TCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHH----HSCBTTEEEE-EEGGGGTTCSCG-G
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHH----HcCCeeeeec-CCHHHHHHhhcC-C
Confidence 355666666679999999999 9999999999999987654443 2344433322 367888888876 4
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCc-cccccccCCcEEEECCccccccCCCceEEEEEe-Ch
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SG 364 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~-~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~-~~ 364 (531)
+|+|++++|+||||.+++ + +++ ++..+.|+++..+. ....+..+.+++++|+||.++.+|.+ .|++++ ++
T Consensus 197 ~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G~R-iG~~~~~~~ 268 (427)
T 2hox_A 197 QYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSR-FGWALIKDE 268 (427)
T ss_dssp GEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGC-CEEEEECCH
T ss_pred ceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccCCCceEEEEeChhcCCCCCce-EEEEEECCH
Confidence 999999999999999999 4 233 56789999865321 11112246789999999999877654 677777 58
Q ss_pred HHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 365 KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL---------------HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 365 ~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl---------------~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
++++.++..........+.....++...|+.. ....++..++.+.+.+.|++.+++....++. +
T Consensus 269 ~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~ 347 (427)
T 2hox_A 269 SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQ-S 347 (427)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCS-C
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccc-c
Confidence 89998887766544445555444444444331 2233455577788888888776552100110 0
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeE
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLV 508 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L-~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lI 508 (531)
. +...++-.....|.++++.++.+ ...+.+.| +..++.+..|..+. ..++.|
T Consensus 348 ~--~~~~~~~~~p~~g~f~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f~----------------------~~~~~~ 400 (427)
T 2hox_A 348 E--YCNYFRRMRPPSPSYAWVKCEWE---EDKDCYQTFQNGRINTQNGVGFE----------------------ASSRYV 400 (427)
T ss_dssp E--EETTTTEEECCCCSEEEEEECSG---GGCSHHHHHHHTTEECEEGGGGT----------------------SCTTEE
T ss_pred c--ccccccccCCCCceEEEEECCCc---HHHHHHHHHHHCCEEEcCCCccC----------------------CCCCEE
Confidence 0 00000000112467888899642 12233332 23466666664321 125789
Q ss_pred EEEecC
Q 009604 509 RFSFGV 514 (531)
Q Consensus 509 RlSvGl 514 (531)
|||++.
T Consensus 401 Ris~~~ 406 (427)
T 2hox_A 401 RLSLIK 406 (427)
T ss_dssp EEECSS
T ss_pred EEEecC
Confidence 999996
No 192
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.78 E-value=1.1e-17 Score=188.50 Aligned_cols=202 Identities=12% Similarity=0.042 Sum_probs=143.3
Q ss_pred CCCcEEEeCChH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----------CCHHHH----
Q 009604 214 GAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----------ADMEGL---- 278 (531)
Q Consensus 214 g~e~~i~~sSG~-~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----------~d~e~L---- 278 (531)
|.+.++++++|+ +|+.+++.+++++||+|+++.++|.+.+.. .+...|+++.+++. .|+++|
T Consensus 187 gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~ 263 (730)
T 1c4k_A 187 NADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKK 263 (730)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEEECTTCCEEEECGGGSCHHH
T ss_pred CCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCCccccCccCCCCHHHHhhhH
Confidence 778889999998 899999999999999999999999887643 14556888776642 266777
Q ss_pred -HHhccCCC-----c----EEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc-------cccccc---CC
Q 009604 279 -EAALNNNN-----V----SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------QKALSL---GA 338 (531)
Q Consensus 279 -e~al~~~~-----t----klV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~-------~~~l~~---ga 338 (531)
++++++++ + |+|++++| |++|.+.|+++|+++|+++|++|++|++|+..+. ..++.. |+
T Consensus 264 le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~ 342 (730)
T 1c4k_A 264 IRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGP 342 (730)
T ss_dssp HHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCT
T ss_pred HHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCC
Confidence 88887631 4 89999999 5899999999999999999999999999875321 123333 78
Q ss_pred c----EEEECCccccccCCCceEEEEEeChHH---------HHHHHHHhhhc-CCCchHHHHHHHHHHHH-----HHHHH
Q 009604 339 D----LVLHSATKFIGGHNDVLAGSISGSGKL---------VTQIRNLHHVL-GGALNPNAAYLIIRGMK-----TLHLR 399 (531)
Q Consensus 339 D----ivv~S~sK~lgg~g~v~gG~iv~~~~l---------i~~l~~~~~~~-G~~~s~~~a~l~l~~L~-----tl~~r 399 (531)
| ++++|+||+++|+. .+|+++.+++. ...+......+ .++.+......+..+++ ....+
T Consensus 343 D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~ 420 (730)
T 1c4k_A 343 EDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKL 420 (730)
T ss_dssp TSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 8 99999999998765 25677543322 12333322222 22333322221111222 23556
Q ss_pred HHHHHHHHHHHHHHHHc-CCCce
Q 009604 400 VQQQNSTALRMAKILEA-HPKVK 421 (531)
Q Consensus 400 ~~~~~~na~~La~~L~~-~p~v~ 421 (531)
+++..++++.+.+.|++ .+++.
T Consensus 421 ~~~~~~~a~~lr~~L~~~i~g~~ 443 (730)
T 1c4k_A 421 WHDLLITTIEARKKLIKAGSMFR 443 (730)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSE
T ss_pred HHHHHHHHHHHHHHHhhhCCCeE
Confidence 77888889999999988 56664
No 193
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.78 E-value=1.5e-17 Score=179.96 Aligned_cols=203 Identities=11% Similarity=0.108 Sum_probs=144.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcc--------CC-----C-EEEEcCCCccchHHHHHhhcccCCc-EEEEeCCC-----C
Q 009604 215 AESTVIMASGMSASTVMLLALVP--------AG-----G-HIVTTTDCYRKTRIFIETVLPKMGI-TATVIDPA-----D 274 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~--------pG-----D-~VIv~~~~y~~t~~~~~~~l~~~Gi-~v~~vd~~-----d 274 (531)
.+.++++++|++|+.+++.++.. +| + +|+++.+.|.+....+. .+. .|. ++..++.+ |
T Consensus 151 ~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~-~~g-~g~~~v~~v~~~~~~~~d 228 (504)
T 2okj_A 151 DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA-ALG-FGTDNVILIKCNERGKII 228 (504)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTT-SCGGGEEEECBCTTSCBC
T ss_pred CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHH-HcC-CCcccEEEEecCCCCCCC
Confidence 35688888999999999887742 57 7 79999999988765543 222 243 67777653 8
Q ss_pred HHHHHHhccCC-----CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc-----cccc--cCCcEEE
Q 009604 275 MEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS--LGADLVL 342 (531)
Q Consensus 275 ~e~Le~al~~~-----~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~-----~~l~--~gaDivv 342 (531)
+++|+++|++. ++++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+... ..+. .++|+++
T Consensus 229 ~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~ 308 (504)
T 2okj_A 229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVT 308 (504)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEE
T ss_pred HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEE
Confidence 99999998651 3899999999999999999999999999999999999998765432 1122 2689999
Q ss_pred ECCccccccCCCceEEEEEeCh-HHHHHHHHH-hh-hcCC-------------------CchHHHHHHHHHHH--HHHHH
Q 009604 343 HSATKFIGGHNDVLAGSISGSG-KLVTQIRNL-HH-VLGG-------------------ALNPNAAYLIIRGM--KTLHL 398 (531)
Q Consensus 343 ~S~sK~lgg~g~v~gG~iv~~~-~li~~l~~~-~~-~~G~-------------------~~s~~~a~l~l~~L--~tl~~ 398 (531)
.++||+++++.+ .|+++.++ ++++..... .. ..+. .......|.+++.+ +.+..
T Consensus 309 ~~~hK~~~~p~~--~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~ 386 (504)
T 2okj_A 309 WNPHKMMGVLLQ--CSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFEN 386 (504)
T ss_dssp ECTTSTTCCCSC--CEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred ECchhhcCCCcc--eEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHH
Confidence 999999986543 57777665 455542211 00 1010 11244455544433 44566
Q ss_pred HHHHHHHHHHHHHHHHHcCCCce
Q 009604 399 RVQQQNSTALRMAKILEAHPKVK 421 (531)
Q Consensus 399 r~~~~~~na~~La~~L~~~p~v~ 421 (531)
++++..++++++.+.|++.|+++
T Consensus 387 ~~~~~~~~a~~l~~~L~~~~~~~ 409 (504)
T 2okj_A 387 QINKCLELAEYLYAKIKNREEFE 409 (504)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCEE
Confidence 67778889999999998887764
No 194
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.78 E-value=9.1e-18 Score=177.17 Aligned_cols=262 Identities=13% Similarity=0.015 Sum_probs=162.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcc-CCCEEEEcCCCccchHHHHHhh----------cccCCcEEEEeCCC----------
Q 009604 215 AESTVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETV----------LPKMGITATVIDPA---------- 273 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~-pGD~VIv~~~~y~~t~~~~~~~----------l~~~Gi~v~~vd~~---------- 273 (531)
.++++++++|++|+.++++.+.. +||+||+..+.|++........ .......+..++..
T Consensus 104 ~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 183 (419)
T 2eo5_A 104 QKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHIN 183 (419)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcccccccccc
Confidence 35788888899999999987543 4999999999997644322111 11111234444432
Q ss_pred -----------CHHHHH-HhccC----CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc-c--
Q 009604 274 -----------DMEGLE-AALNN----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-N-- 330 (531)
Q Consensus 274 -----------d~e~Le-~al~~----~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~-~-- 330 (531)
|+++|+ +++++ .++++|+++..+||+|.+++ +++|.++|+++|++||+||+|.... .
T Consensus 184 ~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~ 263 (419)
T 2eo5_A 184 GYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK 263 (419)
T ss_dssp TTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred ccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc
Confidence 367888 88863 24777777655578898776 9999999999999999999986321 1
Q ss_pred ---ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009604 331 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTA 407 (531)
Q Consensus 331 ---~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~~r~~~~~~na 407 (531)
........|++ |++|.+++ |-...|+++++++++ .+ ..........++..+..+...++.+....++..++.
T Consensus 264 ~~~~~~~~~~~d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~ 338 (419)
T 2eo5_A 264 LFAIENFNTVPDVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIG 338 (419)
T ss_dssp SSGGGGGTCCCSEE--EECGGGGT-TTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhcCCCCCEE--EecccccC-CccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223346765 68899986 413357777777776 55 211111223356665555566665554555666777
Q ss_pred HHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCcc
Q 009604 408 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI 487 (531)
Q Consensus 408 ~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~ 487 (531)
+.+.+.|++. +..+ .+.|++++|++........ |.+.|...++.++.+
T Consensus 339 ~~l~~~L~~~--~~~~------------------~~~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~----------- 386 (419)
T 2eo5_A 339 KIFAEELQGL--ADDV------------------RGIGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPA----------- 386 (419)
T ss_dssp HHHHHHHTTS--SSEE------------------EEETTEEEEECSCHHHHHH-HHHHHHHTTEECEEE-----------
T ss_pred HHHHHHHHHh--hhhe------------------EeeeEEEEEEEecCccHHH-HHHHHHHCCCEEecC-----------
Confidence 7787777653 1111 1246788898842212345 777765445444322
Q ss_pred ccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 488 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 488 ~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
.++.|||++++..+++.++.+.++|+
T Consensus 387 ----------------~~~~lRis~~~~~t~e~i~~~l~~l~ 412 (419)
T 2eo5_A 387 ----------------GRSAIRVIPPLVISEEEAKQGLDILK 412 (419)
T ss_dssp ----------------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ----------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 14689999887665555555555543
No 195
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.3e-17 Score=179.91 Aligned_cols=231 Identities=16% Similarity=0.163 Sum_probs=161.9
Q ss_pred CcEEEeCChHHHHHHHHHHhcc-------------------CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---
Q 009604 216 ESTVIMASGMSASTVMLLALVP-------------------AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 273 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~-------------------pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--- 273 (531)
...+++++|++|+.+++.+... ++++|+++...|.+..... ...|++++.++.+
T Consensus 146 ~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~----~~~g~~~~~v~~~~~~ 221 (481)
T 4e1o_A 146 GGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAG----LISLVKMKFLPVDDNF 221 (481)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHH----HHHTCEEEEECCCTTS
T ss_pred CceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHH----HhCCCceEEEEcCCCC
Confidence 4678999999999888876532 5789999999998866544 2347888888753
Q ss_pred --CHHHHHHhccCC-----CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc----ccccccC---Cc
Q 009604 274 --DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALSLG---AD 339 (531)
Q Consensus 274 --d~e~Le~al~~~-----~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~----~~~l~~g---aD 339 (531)
|+++|+++|+++ .+.+|+++.++|++|.+.|+++|+++|++||+++++|++|+.... .+....| +|
T Consensus 222 ~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aD 301 (481)
T 4e1o_A 222 SLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYAD 301 (481)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCS
T ss_pred cCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCC
Confidence 899999999653 167889999999999999999999999999999999999876532 1122224 59
Q ss_pred EEEECCccccccCCCceEEEEEeChHHHHHHHH----Hhh---------------hcCCCchHHHHHHHHH--HHHHHHH
Q 009604 340 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----LHH---------------VLGGALNPNAAYLIIR--GMKTLHL 398 (531)
Q Consensus 340 ivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~----~~~---------------~~G~~~s~~~a~l~l~--~L~tl~~ 398 (531)
.++.++||+++.+.+. +++++.+++++..... +.. ..+........|.+++ +.+.+..
T Consensus 302 si~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~ 380 (481)
T 4e1o_A 302 SFTFNPSKWMMVHFDC-TGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQA 380 (481)
T ss_dssp EEEECHHHHSSCCSSC-EEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEChHHhcCCCCce-EEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHH
Confidence 9999999999877653 4445545544332110 000 0011122344444443 4566778
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC
Q 009604 399 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI 468 (531)
Q Consensus 399 r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~ 468 (531)
++++..++++++.+.|++.|+++.+ .|. ..++++|.+++......++.+.|..
T Consensus 381 ~~~~~~~~a~~l~~~L~~~~g~~~~-~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~ 433 (481)
T 4e1o_A 381 HVRHGTEMAKYFESLVRNDPSFEIP-AKR----------------HLGLVVFRLKGPNSLTENVLKEIAK 433 (481)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEECC-SCC----------------CSSEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEe-cCC----------------ceeEEEEEeCCchHHHHHHHHHHHh
Confidence 8888899999999999988876432 111 2468999997654556677777643
No 196
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.77 E-value=5.6e-18 Score=183.03 Aligned_cols=270 Identities=11% Similarity=0.115 Sum_probs=169.6
Q ss_pred CcEEEeCChHHHHHHHHHHh----c---------cC------CC-EEEEcCCCccchHHHHHhhcccCCc-EEEEeCCC-
Q 009604 216 ESTVIMASGMSASTVMLLAL----V---------PA------GG-HIVTTTDCYRKTRIFIETVLPKMGI-TATVIDPA- 273 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~al----l---------~p------GD-~VIv~~~~y~~t~~~~~~~l~~~Gi-~v~~vd~~- 273 (531)
+.++++++|++|+.+++.+. + ++ || +|+++...|.+....+. .+. .|. ++..++.+
T Consensus 159 ~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~-~~g-~g~~~v~~v~~~~ 236 (497)
T 2qma_A 159 ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSAS-WMG-LGEKAVMTVDANA 236 (497)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHH-HTT-SCGGGEEEECBCT
T ss_pred CCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHH-HcC-CCcccEEEEecCC
Confidence 57888899999999988873 3 13 46 89999989988765443 222 133 56667654
Q ss_pred ----CHHHHHHhccCC---CcE--EEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccc-----ccc-CC
Q 009604 274 ----DMEGLEAALNNN---NVS--LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-----LSL-GA 338 (531)
Q Consensus 274 ----d~e~Le~al~~~---~tk--lV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~-----l~~-ga 338 (531)
|+++|+++|+++ .++ +|+++.++|++|.+.|+++|.++|+++|+++|+|++|+.+..... ... ++
T Consensus 237 ~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~ 316 (497)
T 2qma_A 237 DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERA 316 (497)
T ss_dssp TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGC
T ss_pred CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccC
Confidence 789999888642 134 888999999999999999999999999999999999876543211 122 67
Q ss_pred cEEEECCccccccCCCceEEEEEe-ChHHHHHHHHHhhhc-C----------C------CchHHHHHHHHHH--HHHHHH
Q 009604 339 DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL-G----------G------ALNPNAAYLIIRG--MKTLHL 398 (531)
Q Consensus 339 Divv~S~sK~lgg~g~v~gG~iv~-~~~li~~l~~~~~~~-G----------~------~~s~~~a~l~l~~--L~tl~~ 398 (531)
|+++.|+||+++++.+ .|+++. ++..++.+....... + . .......|.+++. .+.+..
T Consensus 317 D~i~~s~hK~l~~p~~--~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~ 394 (497)
T 2qma_A 317 HSISVDFHKLFYQTIS--CGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGD 394 (497)
T ss_dssp SEEEEETTTTTCCCSS--CEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHH
T ss_pred CEEEEcchhccCCCcc--eEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHH
Confidence 9999999998887653 355555 444333321100000 0 0 0112233433332 345566
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCH----HHHHHHHHHcCCCCcccc
Q 009604 399 RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL----TATIKFIDALKIPYIAPS 474 (531)
Q Consensus 399 r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~----~~~~~fl~~L~~~~iavS 474 (531)
++++..++++++.+.|++.++++.+.-| .+++++|.+.+.. ....++.+.|...++.+.
T Consensus 395 ~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~ 457 (497)
T 2qma_A 395 MYDHLLAQTLEVADMIRTNDQFELLAEP-----------------SLSTVLFRATHETADLDELNKALRLEALTRGIAVL 457 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEECSCC-----------------SSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBC
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEcCC-----------------CceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEE
Confidence 7777888999999999988776432211 2468999986421 112345555533232221
Q ss_pred cCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEe-cCCCHHHHHHHHHHHHH
Q 009604 475 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GVEDFEDLKADVLQALH 529 (531)
Q Consensus 475 ~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSv-GlE~~edli~dL~~AL~ 529 (531)
+... .+ ..+.||+++ +..++++.++.+.++|+
T Consensus 458 ----------~~~~------------~~-g~~~lRis~~~~~~t~edi~~~~~~l~ 490 (497)
T 2qma_A 458 ----------GETI------------VD-GKTALKFTILNPCLTTSDFESLLSKIN 490 (497)
T ss_dssp ----------EEEE------------ET-TEEEEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ----------EeeE------------EC-CEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 1000 00 135899998 66666666666665554
No 197
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.77 E-value=2.1e-17 Score=181.07 Aligned_cols=151 Identities=16% Similarity=0.270 Sum_probs=113.4
Q ss_pred CcEEEeCChHHHHHHHHHH-----hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhcc
Q 009604 216 ESTVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALN 283 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~a-----ll~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~ 283 (531)
+++++++++++++.+++.+ ++++||+|+++.|.|.+..... .+...|+++..++. .|+++|+++++
T Consensus 166 ~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 243 (546)
T 2zy4_A 166 VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIP--ELAQYALEEVAINADPSLNWQYPDSELDKLKD 243 (546)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHH--HSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHH--HHcCCCcEEEEEecCcccCCCCCHHHHHHhhC
Confidence 3455555555999999887 5789999999999998755432 24455777777653 47899998887
Q ss_pred CCCcEEEEEeCCCCCCCcccC---HHHHHHHH--HhcCCEEEEeCCCCCCcc--ccccc--cCCcEEEECCccccccCCC
Q 009604 284 NNNVSLFFTESPTNPFLRCVD---VKLVSDLC--HKKGAIVCIDGTFATPLN--QKALS--LGADLVLHSATKFIGGHND 354 (531)
Q Consensus 284 ~~~tklV~lesP~NPtG~v~d---l~~I~~la--~~~gi~lIvD~a~a~~~~--~~~l~--~gaDivv~S~sK~lgg~g~ 354 (531)
+ ++++|++++|+||||.+++ +++|.++| +++|++||+|++|..... ..... .+.++++.|+||.+|.+|.
T Consensus 244 ~-~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~Gl 322 (546)
T 2zy4_A 244 P-AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGW 322 (546)
T ss_dssp T-TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGG
T ss_pred C-CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCc
Confidence 6 4999999999999999997 55678888 789999999999875432 11111 2467999999999986765
Q ss_pred ceEEEEEeChH-HHHHH
Q 009604 355 VLAGSISGSGK-LVTQI 370 (531)
Q Consensus 355 v~gG~iv~~~~-li~~l 370 (531)
+ .|+++++++ +++.+
T Consensus 323 R-iG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 323 R-LGVVAAHQQNVFDLA 338 (546)
T ss_dssp C-EEEEEEESSCHHHHH
T ss_pred c-eEEEEECCHHHHHHH
Confidence 4 677777664 76665
No 198
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.77 E-value=8.8e-18 Score=190.54 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=141.3
Q ss_pred CCCcEEEeCChH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---------------CHHH
Q 009604 214 GAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---------------DMEG 277 (531)
Q Consensus 214 g~e~~i~~sSG~-~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---------------d~e~ 277 (531)
|.++.+++++|+ +|+.+++.+++++||+|+++.++|.+.+..+ ...|+++.+++.. |+++
T Consensus 219 G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~----~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~ 294 (755)
T 2vyc_A 219 GADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGL----MLTGAKPVYMVPSRNRYGIIGPIYPQEMQPET 294 (755)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHHCCEEEEECCCBCTTSCBCCCCGGGGSHHH
T ss_pred CCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHH----HHcCCEEEEEeCCCCccccccccCcCCCCHHH
Confidence 778888999997 8899999999999999999999999877554 2347888777531 8999
Q ss_pred HHHhccCC-CcE--------EEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc-------cccccC--Cc
Q 009604 278 LEAALNNN-NVS--------LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALSLG--AD 339 (531)
Q Consensus 278 Le~al~~~-~tk--------lV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~-------~~l~~g--aD 339 (531)
|+++++++ +++ +|++++| ||+|.+.|+++|+++|+++|++|++|++|+..... .++ .| +|
T Consensus 295 le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~-~g~~aD 372 (755)
T 2vyc_A 295 LQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAM-RGEPGD 372 (755)
T ss_dssp HHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSS-CSCCCC
T ss_pred HHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchh-cCCcCC
Confidence 99998642 244 8999998 69999999999999999999999999998754321 223 56 78
Q ss_pred E------EEECCccccccCCCceEEEEEeChH--H--HHHHHHHhhhcC-CCchHHHHHHHHHHHHH-----HHHHHHHH
Q 009604 340 L------VLHSATKFIGGHNDVLAGSISGSGK--L--VTQIRNLHHVLG-GALNPNAAYLIIRGMKT-----LHLRVQQQ 403 (531)
Q Consensus 340 i------vv~S~sK~lgg~g~v~gG~iv~~~~--l--i~~l~~~~~~~G-~~~s~~~a~l~l~~L~t-----l~~r~~~~ 403 (531)
+ +++|+||+++|+.. +|+++.+++ . ...+......+. ++.+......+..+++. ...++++.
T Consensus 373 ~~~~~~iv~~S~hK~L~g~~~--g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~ 450 (755)
T 2vyc_A 373 HNGPTVFATHSTHKLLNALSQ--ASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEV 450 (755)
T ss_dssp CSSBEEEEEEETTTSSSCCTT--CEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHH
T ss_pred ccCCCeEEEECccccccCcCC--eeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6 99999999987652 577766443 1 233333322222 33333322222222221 34567777
Q ss_pred HHHHHHHHHHHHcCCC
Q 009604 404 NSTALRMAKILEAHPK 419 (531)
Q Consensus 404 ~~na~~La~~L~~~p~ 419 (531)
.++++.+.+.|++.++
T Consensus 451 ~~~a~~~r~~L~~l~~ 466 (755)
T 2vyc_A 451 IDEAVDFRQAMARLYK 466 (755)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc
Confidence 7888888888876544
No 199
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.77 E-value=2.6e-17 Score=174.79 Aligned_cols=260 Identities=15% Similarity=0.141 Sum_probs=166.2
Q ss_pred EEeCChHHHHHHHHHH-hccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC----CHHHHHHhccCCCcEEEEEe
Q 009604 219 VIMASGMSASTVMLLA-LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----DMEGLEAALNNNNVSLFFTE 293 (531)
Q Consensus 219 i~~sSG~~Ai~~al~a-ll~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~----d~e~Le~al~~~~tklV~le 293 (531)
+++++|++++..++.+ .+++||+|+++.+.|..+...+...++..|+++++++.. |+++ +++ +|++|+++
T Consensus 129 ~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~----i~~-~t~~v~i~ 203 (438)
T 1wyu_A 129 SMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPE----VGE-EVGAVVVQ 203 (438)
T ss_dssp CBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCC----CCT-TEEEEEEE
T ss_pred EEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHH----hCC-CeEEEEEE
Confidence 5566666444444333 357999999999999988777766566779999988742 3333 666 49999999
Q ss_pred CCCCCCCcccCHHHHHHHHHhcCCEEEEeCC-CCCCccccccccCCcEEEECCcc-----ccccCCCceEEEEEeChHHH
Q 009604 294 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATK-----FIGGHNDVLAGSISGSGKLV 367 (531)
Q Consensus 294 sP~NPtG~v~dl~~I~~la~~~gi~lIvD~a-~a~~~~~~~l~~gaDivv~S~sK-----~lgg~g~v~gG~iv~~~~li 367 (531)
+| ||+|.+.|+++|.++||++|+++|+|.. .+.+....+..+|+|+++.|.+| +++|++ +|+++++++++
T Consensus 204 ~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp~---~G~l~~~~~~~ 279 (438)
T 1wyu_A 204 NP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPH---FGFLATKKAFV 279 (438)
T ss_dssp SS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSC---CEEEEECGGGG
T ss_pred CC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCccCCCCC---eeEEEEcHHHH
Confidence 99 9999999999999999999999997743 32222223345789999999555 344543 68999988776
Q ss_pred HHHHHH-------------------------hhhcCC-Cc---hHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009604 368 TQIRNL-------------------------HHVLGG-AL---NPNA---AY--LIIRGMKTLHLRVQQQNSTALRMAKI 413 (531)
Q Consensus 368 ~~l~~~-------------------------~~~~G~-~~---s~~~---a~--l~l~~L~tl~~r~~~~~~na~~La~~ 413 (531)
+.+... +...+. .. .... ++ +...+-+.+....++..++++++.+.
T Consensus 280 ~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~ 359 (438)
T 1wyu_A 280 RQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHAL 359 (438)
T ss_dssp GGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 554210 111121 11 1221 12 11112223445566677888899999
Q ss_pred HHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCccc--ccCCcccccccCcccccc
Q 009604 414 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAP--SFGGCESIVDQPAIMSYW 491 (531)
Q Consensus 414 L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iav--S~Gg~~Sli~~p~~~s~~ 491 (531)
|++.++++ +..|. + +-.++.|.++. ....+.+.|...++.+ ..|..+
T Consensus 360 L~~~~g~~-~~~~~----~-----------~~~~~~~~~~~---~~~~~~~~L~~~gi~v~~~~~~~~------------ 408 (438)
T 1wyu_A 360 LLEVPGVR-PFTPK----P-----------FFNEFALALPK---DPEAVRRALAERGFHGATPVPREY------------ 408 (438)
T ss_dssp HTTSTTCE-ECSCS----S-----------BCSEEEEECSS---CHHHHHHHHHHTTCCCCEECCTTS------------
T ss_pred HhcCCCeE-ECCCC----C-----------eEEEEEEeCCC---CHHHHHHHHHHCCceecccccccc------------
Confidence 98877664 32221 1 12345565532 2345666664445544 223110
Q ss_pred CCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Q 009604 492 DLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 492 ~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.++.||||++..++++.++.+.++|++
T Consensus 409 ------------~~~~lRis~~~~~t~edi~~~~~~l~~ 435 (438)
T 1wyu_A 409 ------------GENLALFAATELHEEEDLLALREALKE 435 (438)
T ss_dssp ------------CSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ------------CCCeEEEEecccCCHHHHHHHHHHHHH
Confidence 157899999988888888888888764
No 200
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.77 E-value=2.9e-17 Score=173.48 Aligned_cols=270 Identities=14% Similarity=0.110 Sum_probs=167.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhc----------ccCCcEEEEeCC------C---
Q 009604 215 AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL----------PKMGITATVIDP------A--- 273 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all--~pGD~VIv~~~~y~~t~~~~~~~l----------~~~Gi~v~~vd~------~--- 273 (531)
.++++++++|++|+.++++.+. ..+|+|++.++.|++......... ...|+....++. .
T Consensus 102 ~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (433)
T 1zod_A 102 LDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNG 181 (433)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETT
T ss_pred cCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCch
Confidence 4678889999999999998653 346899999999876432221110 012444332221 1
Q ss_pred ------CHHHHHHhccC---CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc-c-----cccc
Q 009604 274 ------DMEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-N-----QKAL 334 (531)
Q Consensus 274 ------d~e~Le~al~~---~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~-~-----~~~l 334 (531)
|+++|++++++ .++++|+++..+||+|.+.+ +++|.++|++||++||+||+|.... . ....
T Consensus 182 ~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~ 261 (433)
T 1zod_A 182 AYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRD 261 (433)
T ss_dssp EECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhc
Confidence 38899998862 34788888766788998766 9999999999999999999987321 1 1112
Q ss_pred ccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhc--CCCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 009604 335 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL--GGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRM 410 (531)
Q Consensus 335 ~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~--G~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~L 410 (531)
....|++ |++|.+++ | ...|++++++++++.+....... ....++..+..+...++.+. ...++..++.+.+
T Consensus 262 ~~~~di~--s~sK~~~~-G-~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l 337 (433)
T 1zod_A 262 GVTPDIL--TLSKTLGA-G-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRL 337 (433)
T ss_dssp TCCCSEE--EECHHHHT-T-SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCCEE--EecccccC-C-CCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2345654 68899997 4 34688889998888876532111 12235555555445554432 2345555666666
Q ss_pred HHHHHc----CCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC-------HHHHHHHHHHcCCCCcccccCCcc
Q 009604 411 AKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------LTATIKFIDALKIPYIAPSFGGCE 479 (531)
Q Consensus 411 a~~L~~----~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~-------~~~~~~fl~~L~~~~iavS~Gg~~ 479 (531)
.+.|++ ++.+..+ .+.|.+++|++... .....+|.+.|...++.+..|+.+
T Consensus 338 ~~~l~~l~~~~~~~~~~------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 399 (433)
T 1zod_A 338 RRGLLDLMERFDCIGDV------------------RGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLP 399 (433)
T ss_dssp HHHHHHHHHHCTTEEEE------------------EEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCT
T ss_pred HHHHHHHHHhCCCeEEE------------------EEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCC
Confidence 666654 2322111 12467888887531 123566777765556555544210
Q ss_pred cccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 480 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 480 Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
+ .++.|||++.+..+++.++.+.++|+
T Consensus 400 ----------------------~-~~~~lRi~~~~~~t~~~i~~~l~~l~ 426 (433)
T 1zod_A 400 ----------------------G-MGGVFRIAPPLTVSEDEIDLGLSLLG 426 (433)
T ss_dssp ----------------------T-SCCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ----------------------C-CCCEEEEECCcCCCHHHHHHHHHHHH
Confidence 1 14789999887665555555554443
No 201
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.76 E-value=2.9e-17 Score=176.93 Aligned_cols=231 Identities=13% Similarity=0.103 Sum_probs=158.8
Q ss_pred CcEEEeCChHHHHHHHHHHhc-------------------cCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----
Q 009604 216 ESTVIMASGMSASTVMLLALV-------------------PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 272 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all-------------------~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~---- 272 (531)
...+++++|++|+.+++.+.. .++++|+++...|.+..... ...|++++.++.
T Consensus 140 ~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~----~~~g~~~~~v~~d~~~ 215 (475)
T 3k40_A 140 GGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAG----LLGGVKLRSVQSENHR 215 (475)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHH----HHHTCEEEEECCBTTB
T ss_pred CCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHH----HHcCCceEEEECCCCC
Confidence 368899999999888887652 13578999999998876544 335888888876
Q ss_pred CCHHHHHHhccCC-----CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc----ccccc---CCcE
Q 009604 273 ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSL---GADL 340 (531)
Q Consensus 273 ~d~e~Le~al~~~-----~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~----~~l~~---gaDi 340 (531)
.|+++|+++|+++ .+++|++..++|++|.+.|+++|+++|++||+++++|++|+.+... ..... .+|.
T Consensus 216 ~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds 295 (475)
T 3k40_A 216 MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADS 295 (475)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSE
T ss_pred cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCE
Confidence 4899999998653 1678889999999999999999999999999999999999765321 11112 3699
Q ss_pred EEECCccccccCCCceEEEEEeChHHH-HHHHH---Hh-hh--------------cCCCchHHHHHHHHH--HHHHHHHH
Q 009604 341 VLHSATKFIGGHNDVLAGSISGSGKLV-TQIRN---LH-HV--------------LGGALNPNAAYLIIR--GMKTLHLR 399 (531)
Q Consensus 341 vv~S~sK~lgg~g~v~gG~iv~~~~li-~~l~~---~~-~~--------------~G~~~s~~~a~l~l~--~L~tl~~r 399 (531)
++.++||+++++.++ +++++.+++++ +.+.. +. .. .+........|.+++ +.+.+..+
T Consensus 296 ~~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~ 374 (475)
T 3k40_A 296 FNFNPHKWMLVNFDC-SAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAH 374 (475)
T ss_dssp EEECHHHHSSCCSSC-EEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHH
T ss_pred EEECchhccCCCCce-EEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHH
Confidence 999999998876543 44444444442 21110 00 00 000112333344333 45566777
Q ss_pred HHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC
Q 009604 400 VQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI 468 (531)
Q Consensus 400 ~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~ 468 (531)
+++..++++++.+.|++.|+++.+ .|. ..++++|.+++......++.+.|..
T Consensus 375 ~~~~~~~a~~l~~~L~~~~g~~l~-~~~----------------~~~iv~f~~~~~~~~~~~l~~~L~~ 426 (475)
T 3k40_A 375 IRRHCNFAKQFGDLCVADSRFELA-AEI----------------NMGLVCFRLKGSNERNEALLKRING 426 (475)
T ss_dssp HHHHHHHHHHHHHHHHHSTTEEES-SCC----------------BTTEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEe-cCC----------------ceEEEEEEeCCchHHHHHHHHHHHh
Confidence 888889999999999998876432 221 2468999997654556677777753
No 202
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.76 E-value=5.8e-17 Score=176.03 Aligned_cols=202 Identities=14% Similarity=0.187 Sum_probs=142.1
Q ss_pred CcEEEeCChHHHHHHHHHHhc-------c-CCC------EEEEcCCCccchHHHHHhhcccCCc-EEEEeCCC-----CH
Q 009604 216 ESTVIMASGMSASTVMLLALV-------P-AGG------HIVTTTDCYRKTRIFIETVLPKMGI-TATVIDPA-----DM 275 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all-------~-pGD------~VIv~~~~y~~t~~~~~~~l~~~Gi-~v~~vd~~-----d~ 275 (531)
+.++++++|++|+.+++.++. + +|| +|+++...|.+....+. .+. .|. ++..++.+ |+
T Consensus 166 ~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~-~~g-~g~~~v~~v~~~~~~~~d~ 243 (515)
T 2jis_A 166 GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAA-FLG-LGTDSVRVVKADERGKMVP 243 (515)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTT-SCGGGEEEECBCTTSCBCH
T ss_pred CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHH-HcC-CCCCcEEEEecCCCCcCCH
Confidence 468888899999988887763 2 576 89999999988765543 221 133 67777643 79
Q ss_pred HHHHHhccCC-----CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccccc-----c-cc-CCcEEEE
Q 009604 276 EGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-----L-SL-GADLVLH 343 (531)
Q Consensus 276 e~Le~al~~~-----~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~~~-----l-~~-gaDivv~ 343 (531)
++|+++|++. ++++|++++|+|++|.+.|+++|.++|+++|+++|+|++|+.+....+ + .. ++|+++.
T Consensus 244 ~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~ 323 (515)
T 2jis_A 244 EDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAW 323 (515)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEE
T ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEE
Confidence 9999998641 389999999999999999999999999999999999999876543211 2 22 6899999
Q ss_pred CCccccccCCCceEEEEEeChH--HHHHHH----HHhhh-----------------cCCCchHHHHHHHHHHH--HHHHH
Q 009604 344 SATKFIGGHNDVLAGSISGSGK--LVTQIR----NLHHV-----------------LGGALNPNAAYLIIRGM--KTLHL 398 (531)
Q Consensus 344 S~sK~lgg~g~v~gG~iv~~~~--li~~l~----~~~~~-----------------~G~~~s~~~a~l~l~~L--~tl~~ 398 (531)
|+||+++++.+ .|+++.+++ +++... .+... .+........|.+++.+ +.+..
T Consensus 324 s~hK~l~~p~g--~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~ 401 (515)
T 2jis_A 324 NPHKLLAAGLQ--CSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLER 401 (515)
T ss_dssp CTTSTTCCCSC--CEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCC--eeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHH
Confidence 99999986543 477766654 655421 11100 01111234444444333 44556
Q ss_pred HHHHHHHHHHHHHHHHHcCCCce
Q 009604 399 RVQQQNSTALRMAKILEAHPKVK 421 (531)
Q Consensus 399 r~~~~~~na~~La~~L~~~p~v~ 421 (531)
.+++..++++++.+.|++.|+++
T Consensus 402 ~~~~~~~~a~~l~~~L~~~~g~~ 424 (515)
T 2jis_A 402 RIDQAFVLARYLVEEMKKREGFE 424 (515)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCEE
Confidence 67777888999999999887764
No 203
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.75 E-value=8.3e-17 Score=169.97 Aligned_cols=274 Identities=13% Similarity=0.068 Sum_probs=157.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--------cCCCEEEEcCCCccchHHHHHhhccc---------CCc--EEEEeCCC--
Q 009604 215 AESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETVLPK---------MGI--TATVIDPA-- 273 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all--------~pGD~VIv~~~~y~~t~~~~~~~l~~---------~Gi--~v~~vd~~-- 273 (531)
.++++++++|++|+..+++.++ ..+|+||+.++.|++........... ... .+.+++..
T Consensus 89 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
T 3i4j_A 89 TFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDP 168 (430)
T ss_dssp TCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCT
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcc
Confidence 4678899999999999998876 34789999999998744221111000 000 22233433
Q ss_pred ------CHHHHHHhccC---CCcEEEEEeCCCC-CCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCcc------ccc
Q 009604 274 ------DMEGLEAALNN---NNVSLFFTESPTN-PFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN------QKA 333 (531)
Q Consensus 274 ------d~e~Le~al~~---~~tklV~lesP~N-PtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~~------~~~ 333 (531)
|+++|++++++ +++++|+++.++| ++|.+.+ +++|.++|++||++||+||+|..... ...
T Consensus 169 ~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~ 248 (430)
T 3i4j_A 169 ARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSR 248 (430)
T ss_dssp TSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred cchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhh
Confidence 34888888862 3478888888888 9998777 99999999999999999999764211 111
Q ss_pred c-ccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHH----hhhcCCCchHHHHHHHHHHHHHHH--HHHHHHHHH
Q 009604 334 L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST 406 (531)
Q Consensus 334 l-~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~----~~~~G~~~s~~~a~l~l~~L~tl~--~r~~~~~~n 406 (531)
. ....|+++ ++|.+++ |-...|++++++++++.+... ........++..+..++..++.+. ..+++..++
T Consensus 249 ~~~~~~di~t--~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~ 325 (430)
T 3i4j_A 249 WSGVTPDIAV--LGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKER 325 (430)
T ss_dssp TTTCCCSEEE--ECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hcCCCCcEEE--EcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 2 23356664 7799986 413467888899998888753 211222345665555555555432 224444555
Q ss_pred HHHHHHHHH----cCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC--------HHHHHHHHHHcCCCCcccc
Q 009604 407 ALRMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--------LTATIKFIDALKIPYIAPS 474 (531)
Q Consensus 407 a~~La~~L~----~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~--------~~~~~~fl~~L~~~~iavS 474 (531)
.+.+.+.|. ++|.+..+ .+.|.++.|++.+. ...+.++.+.|...++.+.
T Consensus 326 ~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 387 (430)
T 3i4j_A 326 GAQLLAGLQALQARFPQMMQV------------------RGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITY 387 (430)
T ss_dssp HHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEC------------CHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEE
Confidence 555555554 34444322 12467888888521 1113456666654454444
Q ss_pred cCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHH----HHHHHHHHHH
Q 009604 475 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED----LKADVLQALH 529 (531)
Q Consensus 475 ~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~ed----li~dL~~AL~ 529 (531)
.+... . .+..++.+||++++..+++ .++.|.++|+
T Consensus 388 ~~~~~-~-------------------~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 426 (430)
T 3i4j_A 388 PGSGA-E-------------------PNGRGDHLLLGPPLSITAAEVDGLLALLAGALE 426 (430)
T ss_dssp -------------------------------CEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ecccc-c-------------------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 33110 0 1123578999988654444 4445555544
No 204
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.74 E-value=2e-17 Score=176.24 Aligned_cols=280 Identities=18% Similarity=0.134 Sum_probs=164.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhccC-----C----CEEEEcCCCccchHHHHHhhcccCCcEEEE------eC-------
Q 009604 214 GAESTVIMASGMSASTVMLLALVPA-----G----GHIVTTTDCYRKTRIFIETVLPKMGITATV------ID------- 271 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~p-----G----D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~------vd------- 271 (531)
+.+++++++||++|+.+++.+++++ | |+|++. ..|..++...... .|..+.. ++
T Consensus 88 ~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 163 (467)
T 2oqx_A 88 GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQI---NGCTVRNVYIKEAFDTGVRYDF 163 (467)
T ss_dssp CCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHH---TTCEEEECBCTTTTCTTSCCTT
T ss_pred CcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccchhhhhc---cCcceeeccccccccCCCCCCc
Confidence 6678999999999999999999888 9 998877 4554443222111 1222211 11
Q ss_pred --CCCHHHHHHhccC---CCcEEEEEeCCCCCC-CcccC---HHHHHHHHHhcCCEEEEeCCCCC--------------C
Q 009604 272 --PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT--------------P 328 (531)
Q Consensus 272 --~~d~e~Le~al~~---~~tklV~lesP~NPt-G~v~d---l~~I~~la~~~gi~lIvD~a~a~--------------~ 328 (531)
..|+++|++++++ .+|++|++++|+||+ |.+.+ +++|.++|++||++||+|+++.. +
T Consensus 164 ~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g 243 (467)
T 2oqx_A 164 KGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKD 243 (467)
T ss_dssp TTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTT
T ss_pred cCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccC
Confidence 1389999999973 248999999999998 77765 77999999999999999976432 1
Q ss_pred ccccccc----cCCcEEEECCccccccCCCceEEEEEeChH-HHHH---HHHHhhhcC-----CCchHHHHHHHHHHHHH
Q 009604 329 LNQKALS----LGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQ---IRNLHHVLG-----GALNPNAAYLIIRGMKT 395 (531)
Q Consensus 329 ~~~~~l~----~gaDivv~S~sK~lgg~g~v~gG~iv~~~~-li~~---l~~~~~~~G-----~~~s~~~a~l~l~~L~t 395 (531)
.....+. .++|+++.|+||.++.+ +||+++++++ +++. ++......+ +.........+..+++.
T Consensus 244 ~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~ 320 (467)
T 2oqx_A 244 WTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_dssp SCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH
T ss_pred ccHHHHhhhhhccCCeEEEecccccCCC---CceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHh
Confidence 1111111 24788899999999754 3688888766 4443 333221111 11222222112223333
Q ss_pred H--HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEc----C-CHHH--HHHHHHHc
Q 009604 396 L--HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD----G-DLTA--TIKFIDAL 466 (531)
Q Consensus 396 l--~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~----g-~~~~--~~~fl~~L 466 (531)
. ..++++..++++.+.+.|++. ++..+ |. .+.++++.++ + +... ..++.+.|
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 381 (467)
T 2oqx_A 321 GMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ--QA----------------GGHAAFVDAGKLLPHIPADQFPAQALACEL 381 (467)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHT-TCCEE--EE----------------CSSCEEEEHHHHSTTSCGGGCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHC-CCeee--cC----------------CceEEEEechhhcccCCcccccHHHHHHHH
Confidence 2 235566667888899999876 44322 31 2346677763 1 1111 44556666
Q ss_pred -CCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHH
Q 009604 467 -KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE-DFEDLKADVLQALH 529 (531)
Q Consensus 467 -~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE-~~edli~dL~~AL~ 529 (531)
...++.++.|+.+.....|. +. . ......+.|||+++.. .+++.++.+.++|+
T Consensus 382 ~~~~gv~~~~~~~~~~~~~~~---~g-~------~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~ 436 (467)
T 2oqx_A 382 YKVAGIRAVEIGSFLLGRDPK---TG-K------QLPCPAELLRLTIPRATYTQTHMDFIIEAFK 436 (467)
T ss_dssp HHHHCEECEEESHHHHCBCTT---TC-S------BCCCSCCEEEECCCTTTSCHHHHHHHHHHHH
T ss_pred HHhcCceeccccccccccccc---cc-c------cccCccCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 55677777654321110010 00 0 0001247899999987 55555555555443
No 205
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.74 E-value=1.1e-16 Score=169.09 Aligned_cols=192 Identities=16% Similarity=0.107 Sum_probs=128.3
Q ss_pred EEEeCChHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhccC-CCc
Q 009604 218 TVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN-NNV 287 (531)
Q Consensus 218 ~i~~sSG~~Ai~~al~all~--pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-------~d~e~Le~al~~-~~t 287 (531)
++++.+|++|+.+++..++. | |+|+++.|.|..... .++..|.++..++. .|+++|++++++ .++
T Consensus 100 i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 174 (405)
T 3k7y_A 100 TIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVN----MIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNG 174 (405)
T ss_dssp EEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHH----HHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSS
T ss_pred EEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHH----HHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCC
Confidence 46666677999999998887 8 999999999988653 34556888777653 278999998863 236
Q ss_pred EEEEEeCC-CCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc---------ccc-cc-CCcEEEECCccccccC
Q 009604 288 SLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---------KAL-SL-GADLVLHSATKFIGGH 352 (531)
Q Consensus 288 klV~lesP-~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~---------~~l-~~-gaDivv~S~sK~lgg~ 352 (531)
++|++.+| |||||.+++ +++|+++|+++|+++|+|++|...... ..+ .. ..-+++.|+||.|+-.
T Consensus 175 ~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~ 254 (405)
T 3k7y_A 175 SSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLY 254 (405)
T ss_dssp CEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCT
T ss_pred eEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCc
Confidence 88888765 899999997 557788899999999999998754321 011 11 2348899999999977
Q ss_pred CCceEEEEE---eChHHHHHHHH----HhhhcCCCchHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 009604 353 NDVLAGSIS---GSGKLVTQIRN----LHHVLGGALNPNAAYLIIRGM----------KTLHLRVQQQNSTALRMAKILE 415 (531)
Q Consensus 353 g~v~gG~iv---~~~~li~~l~~----~~~~~G~~~s~~~a~l~l~~L----------~tl~~r~~~~~~na~~La~~L~ 415 (531)
|.+ .|+++ .++++++.+.. .....-...+.+.+.++...+ +.+....++..++++.+.+.|+
T Consensus 255 GlR-iG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~ 333 (405)
T 3k7y_A 255 GER-AGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLE 333 (405)
T ss_dssp TTT-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-ceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766 45553 36666655532 222111222333332222222 2222223445677788888888
No 206
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.74 E-value=2.6e-17 Score=175.27 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=134.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcc----CC----CEEEEcCCCccchHHHHHhh---------cccCCcEEEEeCCC----
Q 009604 215 AESTVIMASGMSASTVMLLALVP----AG----GHIVTTTDCYRKTRIFIETV---------LPKMGITATVIDPA---- 273 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~----pG----D~VIv~~~~y~~t~~~~~~~---------l~~~Gi~v~~vd~~---- 273 (531)
.+.+++++||++|+..+++.+.. +| |+||+..+.|++........ +......+..++..
T Consensus 104 ~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (448)
T 3dod_A 104 LTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYR 183 (448)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTT
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCcccc
Confidence 46899999999999999988765 55 99999999997743211110 00001122333332
Q ss_pred ------------CHHHHHHhcc--CCCcEEEEEeCCC-CCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc-----
Q 009604 274 ------------DMEGLEAALN--NNNVSLFFTESPT-NPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL----- 329 (531)
Q Consensus 274 ------------d~e~Le~al~--~~~tklV~lesP~-NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~----- 329 (531)
|+++|+++++ ..++++|++|.++ |++|.+.+ +++|.++|++||++||+||+|....
T Consensus 184 ~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~ 263 (448)
T 3dod_A 184 SESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKM 263 (448)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred CCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccch
Confidence 3788999886 2248899999998 99998776 9999999999999999999976321
Q ss_pred -cccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHH-------HhhhcCCCchHHHHHHHHHHHHHHH--HH
Q 009604 330 -NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-------LHHVLGGALNPNAAYLIIRGMKTLH--LR 399 (531)
Q Consensus 330 -~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~-------~~~~~G~~~s~~~a~l~l~~L~tl~--~r 399 (531)
.........|++ +++|.+++ |....|++++++++++.+.. .........++..+..++..++.+. ..
T Consensus 264 ~a~~~~~~~~di~--t~sK~l~~-G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 340 (448)
T 3dod_A 264 FACEHENVQPDLM--AAGKGITG-GYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENI 340 (448)
T ss_dssp SGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTH
T ss_pred hhhhhcCCCCCEE--EecccccC-CcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccH
Confidence 112223335666 46799986 42346888888888887654 2111222345666666666666542 23
Q ss_pred HHHHHHHHHHHHHHHHc---CCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcC
Q 009604 400 VQQQNSTALRMAKILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG 454 (531)
Q Consensus 400 ~~~~~~na~~La~~L~~---~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g 454 (531)
+++..++.+++.+.|.+ ++.+..+ ++.|.++++++..
T Consensus 341 ~~~~~~~~~~~~~~l~~l~~~~~~~~~------------------~~~g~~~~~~~~~ 380 (448)
T 3dod_A 341 VEQVAEKSKKLHFLLQDLHALPHVGDI------------------RQLGFMCGAELVR 380 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EeeeEEEEEEEcc
Confidence 45555666666666654 2322211 2357788999864
No 207
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.74 E-value=1.1e-16 Score=170.37 Aligned_cols=269 Identities=14% Similarity=0.146 Sum_probs=166.3
Q ss_pred EEEeCChHHHHHHHHHHhc-----c---CCCEEEEcCCCccchHHHHHhhc---------ccCCcEEEEeCC--------
Q 009604 218 TVIMASGMSASTVMLLALV-----P---AGGHIVTTTDCYRKTRIFIETVL---------PKMGITATVIDP-------- 272 (531)
Q Consensus 218 ~i~~sSG~~Ai~~al~all-----~---pGD~VIv~~~~y~~t~~~~~~~l---------~~~Gi~v~~vd~-------- 272 (531)
+++++||++|+..+++.+. . ++|+|++..+.|++........- ......+.+++.
T Consensus 110 v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (452)
T 3n5m_A 110 IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPG 189 (452)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTT
T ss_pred EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCcc
Confidence 8889999999999998876 5 78999999999987432221110 001112333432
Q ss_pred CC---------HHHHHHhcc---CCCcEEEEEeCC-CCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc------
Q 009604 273 AD---------MEGLEAALN---NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL------ 329 (531)
Q Consensus 273 ~d---------~e~Le~al~---~~~tklV~lesP-~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~------ 329 (531)
.| +++|+++++ ..++++|++|++ +| +|.+++ +++|.++|++||++||+||+|....
T Consensus 190 ~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~ 268 (452)
T 3n5m_A 190 IERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAF 268 (452)
T ss_dssp TTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred CCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccc
Confidence 23 899999987 224899999999 89 998886 9999999999999999999976321
Q ss_pred cccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHH---Hhh-hcC--CCchHHHHHHHHHHHHHHH--HHHH
Q 009604 330 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LHH-VLG--GALNPNAAYLIIRGMKTLH--LRVQ 401 (531)
Q Consensus 330 ~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~---~~~-~~G--~~~s~~~a~l~l~~L~tl~--~r~~ 401 (531)
.........|+++ ++|.+++ |-...|++++++++++.+.. ... ..+ ...++..+..++..++.+. ..++
T Consensus 269 ~~~~~~~~~di~t--~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 345 (452)
T 3n5m_A 269 GFMNYDVKPDIIT--MAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIE 345 (452)
T ss_dssp GGGGTTCCCSEEE--ECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhhcCCCCCEEe--ecccccC-CCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 1122223356664 7799986 41336788888888877642 111 112 2345666666555665442 2244
Q ss_pred HHHHHHHHHHHHHHc----CCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC--------HHHHHHHHHHcCCC
Q 009604 402 QQNSTALRMAKILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--------LTATIKFIDALKIP 469 (531)
Q Consensus 402 ~~~~na~~La~~L~~----~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~--------~~~~~~fl~~L~~~ 469 (531)
+..++.+.+.+.|++ +|.+..+ ++.|.++.|++..+ .....++.+.|...
T Consensus 346 ~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (452)
T 3n5m_A 346 RSAQMGSLLLEQLKEEIGEHPLVGDI------------------RGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEK 407 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEE------------------EESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEE------------------EEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHC
Confidence 555556666665543 3433222 23566778877321 12344566666555
Q ss_pred CcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 470 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 470 ~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
++.+..++.+. + ..++.|||++++..+++.++.+.++|+
T Consensus 408 Gv~~~~~~~~~----~-----------------~~~~~iRi~~~~~~t~e~i~~~l~~l~ 446 (452)
T 3n5m_A 408 GLIIGRNGMTT----A-----------------GYNNILTLAPPLVISSEEIAFVIGTLK 446 (452)
T ss_dssp TEECEECTTSS----T-----------------TCCCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CcEEeecCccc----C-----------------CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 65555443211 0 125789999887655555555544443
No 208
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.74 E-value=2.7e-16 Score=168.09 Aligned_cols=268 Identities=12% Similarity=0.058 Sum_probs=164.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc--------CCCEEEEcCCCccchHHHHHhh---------cccCCcEEEEeC--C--
Q 009604 214 GAESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV---------LPKMGITATVID--P-- 272 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~--------pGD~VIv~~~~y~~t~~~~~~~---------l~~~Gi~v~~vd--~-- 272 (531)
+.+++++++||++|+..+++.+.. ++++||+.++.|++........ +......+..++ .
T Consensus 111 ~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (460)
T 3gju_A 111 GMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYF 190 (460)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGG
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccc
Confidence 456789999999999999988764 4689999999997754322111 111111233333 1
Q ss_pred --CC------------HHHHHHhccC---CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc-c
Q 009604 273 --AD------------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-N 330 (531)
Q Consensus 273 --~d------------~e~Le~al~~---~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~-~ 330 (531)
+| +++|++++++ +++++|++|.++|++|.+.+ +++|.++|++||++||+||+|.... .
T Consensus 191 ~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~ 270 (460)
T 3gju_A 191 RRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRL 270 (460)
T ss_dssp GCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred cCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence 22 6889988862 24899999998899998766 9999999999999999999976321 1
Q ss_pred -----ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHH-------hhhcCCCchHHHHHHHHHHHHHHH-
Q 009604 331 -----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLGGALNPNAAYLIIRGMKTLH- 397 (531)
Q Consensus 331 -----~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~-------~~~~G~~~s~~~a~l~l~~L~tl~- 397 (531)
........|+++ ++|.+++.. ...|++++++++++.+... ........++..+..++..|+.+.
T Consensus 271 g~~~~~~~~~~~pdi~t--~sK~l~gG~-~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 347 (460)
T 3gju_A 271 GTMFGSDHYGIKPDLIT--IAKGLTSAY-APLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE 347 (460)
T ss_dssp SSSCHHHHHTCCCSEEE--ECGGGTTTS-SCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred cccchHhhcCCCCCeee--eehhhcCCC-CCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 112223456664 679998732 2367888899988887532 111122345666666556666432
Q ss_pred -HHHHHHHHHHHHHHHHH----HcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCH----------HHHHHH
Q 009604 398 -LRVQQQNSTALRMAKIL----EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL----------TATIKF 462 (531)
Q Consensus 398 -~r~~~~~~na~~La~~L----~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~----------~~~~~f 462 (531)
..+++..++.+++.+.| .+++.+..+ ++.|.++.|++..+. ....++
T Consensus 348 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (460)
T 3gju_A 348 MDLVTNAGETGAYFRAELAKAVGGHKNVGEV------------------RGDGMLAAVEFVADKDDRVFFDASQKIGPQV 409 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------eeeeEEEEEEEccCccccccccchHHHHHHH
Confidence 22444445555555544 344433322 235778889886321 124456
Q ss_pred HHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009604 463 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 463 l~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL 528 (531)
.+.|...++.+..++ .++.|||++.+..+++.++.+.++|
T Consensus 410 ~~~l~~~Gv~v~~~~--------------------------~~~~iRi~~~~~~t~e~i~~~l~~l 449 (460)
T 3gju_A 410 ATALAASGVIGRAMP--------------------------QGDILGFAPPLCLTREQADIVVSKT 449 (460)
T ss_dssp HHHHHHTTEECEECS--------------------------SSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCeEEecCC--------------------------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 665544444333221 1478999977655544444444443
No 209
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.73 E-value=7e-17 Score=173.00 Aligned_cols=267 Identities=13% Similarity=0.094 Sum_probs=166.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc-------CCC-EEEEcCCCccchHHHHHhh----------cccCCcEEEEeCC---
Q 009604 214 GAESTVIMASGMSASTVMLLALVP-------AGG-HIVTTTDCYRKTRIFIETV----------LPKMGITATVIDP--- 272 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~-------pGD-~VIv~~~~y~~t~~~~~~~----------l~~~Gi~v~~vd~--- 272 (531)
+.+++++++||++|+..+++.+.+ +|+ +||+.++.|++........ .......+.+++.
T Consensus 134 ~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 213 (457)
T 3tfu_A 134 GLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR 213 (457)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS
T ss_pred CcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc
Confidence 346899999999999999988765 554 8888888887643221111 1111112223332
Q ss_pred ----CCHHHHHHhcc---CCCcEEEEEeC-CCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc------ccccc
Q 009604 273 ----ADMEGLEAALN---NNNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL------NQKAL 334 (531)
Q Consensus 273 ----~d~e~Le~al~---~~~tklV~les-P~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~------~~~~l 334 (531)
.|+++|+++++ + ++++|++|+ ++|++|.+++ +++|.++|++||++||+||++.... .....
T Consensus 214 ~~~~~d~~~le~~l~~~~~-~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~ 292 (457)
T 3tfu_A 214 DYDPAYSAAFEAQLAQHAG-ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA 292 (457)
T ss_dssp SCCHHHHHHHHHHHHHHGG-GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHH
T ss_pred ccCHHHHHHHHHHHHhCCC-CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhc
Confidence 37889999987 4 489999999 9999998876 9999999999999999999975321 11222
Q ss_pred ccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHH--h-hhcC--CCchHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 009604 335 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--H-HVLG--GALNPNAAYLIIRGMKTLH--LRVQQQNSTA 407 (531)
Q Consensus 335 ~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~--~-~~~G--~~~s~~~a~l~l~~L~tl~--~r~~~~~~na 407 (531)
....|++ +++|.++|.. ...|++++++++++.+... . ...+ ...++..+..++..|+.+. ...++..++.
T Consensus 293 ~~~pdii--t~sK~l~gG~-~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~ 369 (457)
T 3tfu_A 293 GVSPDIM--CVGKALTGGY-LSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELA 369 (457)
T ss_dssp TCCCSEE--EECGGGGTTS-SCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCceEE--EEChhhhCCC-cceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3346777 6789998732 2367888899888887521 1 0122 2345666666666666543 2245555666
Q ss_pred HHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCcc
Q 009604 408 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI 487 (531)
Q Consensus 408 ~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~ 487 (531)
+++.+.|++.. .+|.+. ..++.|.++.|+++.. ....++.+.|...++.+. |
T Consensus 370 ~~l~~~L~~l~-----~~~~v~----------~vr~~G~~~~i~l~~~-~~~~~~~~~l~~~Gv~v~----------~-- 421 (457)
T 3tfu_A 370 AGLTAGLDTAR-----ALPAVT----------DVRVCGAIGVIECDRP-VDLAVATPAALDRGVWLR----------P-- 421 (457)
T ss_dssp HHHHHHHGGGG-----GSTTEE----------EEEECSSCEEEEESSC-CCHHHHHHHHHHTTEECC----------C--
T ss_pred HHHHHHHHHHh-----cCCCee----------eeecCCeEEEEEECCc-ccHHHHHHHHHHCCeEEE----------e--
Confidence 67777776531 112110 1123577899999653 224556666644343322 1
Q ss_pred ccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009604 488 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 488 ~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL 528 (531)
..+.|||+..+-.+++.++.+.++|
T Consensus 422 ----------------~~~~lRi~p~~~~t~eei~~~l~~L 446 (457)
T 3tfu_A 422 ----------------FRNLVYAMPPYICTPAEITQITSAM 446 (457)
T ss_dssp ----------------BTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred ----------------cCCEEEEECCCCCCHHHHHHHHHHH
Confidence 1357999877654444444444444
No 210
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.73 E-value=1.4e-16 Score=168.50 Aligned_cols=199 Identities=20% Similarity=0.262 Sum_probs=132.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhhc----------ccCCc------EEEEeCCCCH
Q 009604 214 GAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVL----------PKMGI------TATVIDPADM 275 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~--pGD~VIv~~~~y~~t~~~~~~~l----------~~~Gi------~v~~vd~~d~ 275 (531)
+.+++++++||++|+.++++.+.. ++|+||+..+.|++......... ...++ .+..++..|+
T Consensus 110 ~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 189 (434)
T 3l44_A 110 ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNV 189 (434)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCH
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccH
Confidence 357899999999999999987654 78999999999877431110000 00111 3455666799
Q ss_pred HHHHHhccC--CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCC---cc--ccccccCCcEEEEC
Q 009604 276 EGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---LN--QKALSLGADLVLHS 344 (531)
Q Consensus 276 e~Le~al~~--~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~---~~--~~~l~~gaDivv~S 344 (531)
++|++++++ .++++|++|.++|++|.+.+ +++|.++|++||++||+||+|... .. ........|++ +
T Consensus 190 ~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~--t 267 (434)
T 3l44_A 190 ETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLT--A 267 (434)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEE--E
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCee--e
Confidence 999999872 24788999888888888887 999999999999999999998643 11 11223345655 5
Q ss_pred CccccccCCCceEEEEEeChHHHHHHHHHhh-hcC--CCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Q 009604 345 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEA 416 (531)
Q Consensus 345 ~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~-~~G--~~~s~~~a~l~l~~L~tl--~~r~~~~~~na~~La~~L~~ 416 (531)
++|.+++ | ...|++++++++++.+..... ..+ ...++..+..++..++.+ ...+++..++.+.+.+.|++
T Consensus 268 ~sK~~~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 342 (434)
T 3l44_A 268 LGKVIGG-G-LPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILE 342 (434)
T ss_dssp EEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcC-C-cCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 7899984 4 346778899988877654211 112 234566555555555543 23345555666666666654
No 211
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.72 E-value=3.2e-16 Score=167.45 Aligned_cols=266 Identities=14% Similarity=0.075 Sum_probs=162.8
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc--------CCCEEEEcCCCccchHHHHHhh---------cccCCcEEEEeCCC---
Q 009604 214 GAESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV---------LPKMGITATVIDPA--- 273 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~--------pGD~VIv~~~~y~~t~~~~~~~---------l~~~Gi~v~~vd~~--- 273 (531)
+.+.+++++||++|+..+++.+.+ ++|+||+..+.|++........ .......+..++..
T Consensus 110 ~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 189 (459)
T 4a6r_A 110 GFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWY 189 (459)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccc
Confidence 356889999999999999998875 5789999999998754222111 01111123333311
Q ss_pred ------C--------HHHHHHhccC---CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCcc--
Q 009604 274 ------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-- 330 (531)
Q Consensus 274 ------d--------~e~Le~al~~---~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~~-- 330 (531)
| +++|++++++ +++++|++|.++|++|.+.+ +++|.++|++||++||+||+|.....
T Consensus 190 ~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G 269 (459)
T 4a6r_A 190 KHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG 269 (459)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 2 7888888862 24788988888888888777 99999999999999999999763211
Q ss_pred ----ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHH---HhhhcCCCchHHHHHHHHHHHHHHH--HHHH
Q 009604 331 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LHHVLGGALNPNAAYLIIRGMKTLH--LRVQ 401 (531)
Q Consensus 331 ----~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~---~~~~~G~~~s~~~a~l~l~~L~tl~--~r~~ 401 (531)
........|+++ ++|.+++.+. ..|++++++++++.+.. .........++..+..++..|+.+. ..++
T Consensus 270 ~~~~~~~~~~~pdi~t--~sK~l~gg~~-~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 346 (459)
T 4a6r_A 270 EWFGHQHFGFQPDLFT--AAKGLSSGYL-PIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQ 346 (459)
T ss_dssp SSSHHHHHTCCCSEEE--ECGGGGTTSS-CCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccchHhhcCCCCCeee--hhhhhcCCCC-CccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHH
Confidence 112233467765 6799987543 35788889999888862 1211112334555555555665432 2234
Q ss_pred HHH-HHHHHHHHHH----HcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCH----------HHHHHHHHHc
Q 009604 402 QQN-STALRMAKIL----EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL----------TATIKFIDAL 466 (531)
Q Consensus 402 ~~~-~na~~La~~L----~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~----------~~~~~fl~~L 466 (531)
+.. ++.+++.+.| .+++.+..+ ++.|.++.|++..+. .....+.+.|
T Consensus 347 ~~~~~~~~~~~~~l~~~l~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 408 (459)
T 4a6r_A 347 RVKDDIGPYMQKRWRETFSRFEHVDDV------------------RGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIF 408 (459)
T ss_dssp HHHHTHHHHHHHHHHHHHTTCTTEEEE------------------EEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EEEEEEEEEEEecCccccccccchHHHHHHHHHHH
Confidence 444 4555555555 333433222 235778889885321 1245566655
Q ss_pred CCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009604 467 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 467 ~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL 528 (531)
...++.+..+ .+.|||++.+-.+++.++.+.++|
T Consensus 409 ~~~Gv~v~~~----------------------------g~~iRi~~~~~~t~e~i~~~l~~l 442 (459)
T 4a6r_A 409 FRNNLIMRAC----------------------------GDHIVSAPPLVMTRAEVDEMLAVA 442 (459)
T ss_dssp HHTTEECEEE----------------------------TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHCCeEEecC----------------------------CCEEEEECCCCCCHHHHHHHHHHH
Confidence 4434333211 167999977655544444444443
No 212
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.72 E-value=5.9e-17 Score=171.44 Aligned_cols=241 Identities=13% Similarity=0.152 Sum_probs=156.2
Q ss_pred CCCcEEEeCChHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhc----------ccCCc------EEEEeCCCCH
Q 009604 214 GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL----------PKMGI------TATVIDPADM 275 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~al--l~pGD~VIv~~~~y~~t~~~~~~~l----------~~~Gi------~v~~vd~~d~ 275 (531)
+.+++++++||++|+.++++.. +.++|+||+..+.|++......... ...|+ .+..++..|+
T Consensus 111 ~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~ 190 (434)
T 2epj_A 111 RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDV 190 (434)
T ss_dssp TTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCH
Confidence 3577899999999999999861 3456788888888876332110000 11243 2445566799
Q ss_pred HHHHHhccC--CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccccCCcEEEEC
Q 009604 276 EGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHS 344 (531)
Q Consensus 276 e~Le~al~~--~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~gaDivv~S 344 (531)
++|++++++ .++++|+++..+|++|.+.+ +++|.++|++||++||+||+|..... ........|++ |
T Consensus 191 ~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s 268 (434)
T 2epj_A 191 EALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGDII--V 268 (434)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCSEE--E
T ss_pred HHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCCee--e
Confidence 999999873 24889988877788999988 99999999999999999999873211 11122346765 7
Q ss_pred CccccccCCCceEEEEEeChHHHHHHHHHhh-hcCC--CchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcC--
Q 009604 345 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKILEAH-- 417 (531)
Q Consensus 345 ~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~-~~G~--~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~La~~L~~~-- 417 (531)
++|.+++ | ..+|++++++++++.+..... ..+. ..++..+..+...++.+. ...++..++.+.+.+.|++.
T Consensus 269 ~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 346 (434)
T 2epj_A 269 LGKIIGG-G-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLD 346 (434)
T ss_dssp EEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhcC-C-cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 7899997 4 347889999888776654111 1222 345666666555666553 23455566677777777653
Q ss_pred --CCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC------------HHHHHHHHHHcCCCCcccccC
Q 009604 418 --PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------------LTATIKFIDALKIPYIAPSFG 476 (531)
Q Consensus 418 --p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~------------~~~~~~fl~~L~~~~iavS~G 476 (531)
+.+.. ..+.|.+++|+++.. .....+|.+.|...++.+..|
T Consensus 347 ~~~~~~~------------------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 401 (434)
T 2epj_A 347 RTGLPYT------------------INRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPS 401 (434)
T ss_dssp HHTCCEE------------------EEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSS
T ss_pred hCCCcEE------------------EEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEecc
Confidence 21111 123578999999641 234566777776556555544
No 213
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.72 E-value=1.4e-16 Score=170.19 Aligned_cols=268 Identities=15% Similarity=0.126 Sum_probs=162.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhh----------cccCCcEEEEeCCC---------
Q 009604 215 AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV----------LPKMGITATVIDPA--------- 273 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~--pGD~VIv~~~~y~~t~~~~~~~----------l~~~Gi~v~~vd~~--------- 273 (531)
.+++++++||++|+.++++.+.. .+++|++..+.|++........ +......+..++..
T Consensus 122 ~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 201 (451)
T 3oks_A 122 DKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFG 201 (451)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGC
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccc
Confidence 36799999999999999976653 4589999999988754322111 11111134444432
Q ss_pred ---------CHHHHHHhc----cCCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc------c
Q 009604 274 ---------DMEGLEAAL----NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL------N 330 (531)
Q Consensus 274 ---------d~e~Le~al----~~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~------~ 330 (531)
+++.+++.+ .++++++|++|..++..|.+.+ +++|.++|++||++||+||+|.... .
T Consensus 202 ~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~ 281 (451)
T 3oks_A 202 KELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFA 281 (451)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG
T ss_pred cccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchh
Confidence 233333433 3334778888776666677766 9999999999999999999976321 1
Q ss_pred ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 009604 331 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTAL 408 (531)
Q Consensus 331 ~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~~--r~~~~~~na~ 408 (531)
........|++ |++|.+++ | ...|++++++++++.+...........++..++.++..++.+.. .+++..++.+
T Consensus 282 ~~~~~~~pdi~--t~sK~l~~-G-~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 357 (451)
T 3oks_A 282 CEHEGIDPDLI--VTAKGIAG-G-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEK 357 (451)
T ss_dssp GGGGTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhcCCCCCee--eehhhhhC-C-cceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 22223345666 67899987 4 34678888888887765433322334466666666666654432 2444445555
Q ss_pred HHHHHHH----cCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcC------CHHHHHHHHHHcCCCCcccccCCc
Q 009604 409 RMAKILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------DLTATIKFIDALKIPYIAPSFGGC 478 (531)
Q Consensus 409 ~La~~L~----~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g------~~~~~~~fl~~L~~~~iavS~Gg~ 478 (531)
++.+.|. +++.+..+ ++.|.+++|++.. ......++.+.|...++.+..++.
T Consensus 358 ~l~~~L~~~~~~~~~~~~~------------------~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 419 (451)
T 3oks_A 358 IMKDRLGRLQAEDDRIGDV------------------RGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGT 419 (451)
T ss_dssp HHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECT
T ss_pred HHHHHHHHHHhhCCCeEEE------------------EEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCC
Confidence 5555554 34433222 2357799999842 234566777776554544432211
Q ss_pred ccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 479 ESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 479 ~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
..+.+||++.+..+++.++.+.++|+
T Consensus 420 -------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~ 445 (451)
T 3oks_A 420 -------------------------YGNVVRFLPPLSIGDDLLNEGLDVLE 445 (451)
T ss_dssp -------------------------TSCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred -------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 24689999887655555554444443
No 214
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.72 E-value=1.6e-16 Score=169.62 Aligned_cols=261 Identities=14% Similarity=0.101 Sum_probs=161.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhc---c-----------CCCEEEEcCCCccchHHHH----------HhhcccCCcEEEEe
Q 009604 215 AESTVIMASGMSASTVMLLALV---P-----------AGGHIVTTTDCYRKTRIFI----------ETVLPKMGITATVI 270 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all---~-----------pGD~VIv~~~~y~~t~~~~----------~~~l~~~Gi~v~~v 270 (531)
.+++++++||++|+..+++.+. + +||+||+.++.|++..... +.........+.++
T Consensus 119 ~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (449)
T 2cjg_A 119 LPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDA 198 (449)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEE
Confidence 4678899999999999987542 2 2899999999988743211 11111112245555
Q ss_pred CCCC--H-------------HHHHHhcc--CCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCC-
Q 009604 271 DPAD--M-------------EGLEAALN--NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP- 328 (531)
Q Consensus 271 d~~d--~-------------e~Le~al~--~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~- 328 (531)
+..| . ++|+++++ ..++++|+++.++||+|.+.+ +++|.++|++||++||+||+|...
T Consensus 199 ~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g 278 (449)
T 2cjg_A 199 PYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278 (449)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred cCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCC
Confidence 5544 2 34888885 125899999888899998776 999999999999999999998732
Q ss_pred cc-----ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHH--Hh-hhcC--CCchHHHHHHHHHHHHHHH-
Q 009604 329 LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LH-HVLG--GALNPNAAYLIIRGMKTLH- 397 (531)
Q Consensus 329 ~~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~--~~-~~~G--~~~s~~~a~l~l~~L~tl~- 397 (531)
.. ........|++ +++|.+ + .|++++++++++.+.. .. ...+ ...++..+..+...++.+.
T Consensus 279 ~~g~~~~~~~~~~~~di~--t~sK~l--~----iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~ 350 (449)
T 2cjg_A 279 LTGTAWAYQQLDVAPDIV--AFGKKT--Q----VCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEA 350 (449)
T ss_dssp TTSSSSTHHHHTCCCSEE--EECGGG--S----SEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred ccCcceeecccCCCceEE--EecCcc--c----EEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHh
Confidence 11 12223456776 577998 2 4677788887765321 00 1111 2234555555555555432
Q ss_pred -HHHHHHHHHHHHHHHHHHc----CCC-ceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCc
Q 009604 398 -LRVQQQNSTALRMAKILEA----HPK-VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI 471 (531)
Q Consensus 398 -~r~~~~~~na~~La~~L~~----~p~-v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~i 471 (531)
...++..++.+.+.+.|++ ++. +..+ .+.|+++.|++++ ......|.+.|...++
T Consensus 351 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~------------------~~~g~~~~~~~~~-~~~~~~~~~~l~~~Gv 411 (449)
T 2cjg_A 351 EGLFERAVQHGKYLRARLDELAADFPAVVLDP------------------RGRGLMCAFSLPT-TADRDELIRQLWQRAV 411 (449)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE------------------EEETTEEEEECSS-HHHHHHHHHHHHHTTE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE------------------eeccEEEEEEECC-hHHHHHHHHHHHHCCe
Confidence 2345555667777777764 232 2211 2357789998864 2345567776654444
Q ss_pred ccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 472 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 472 avS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
.+..| .++.|||++++..+++.++.+.++|+
T Consensus 412 ~v~~~---------------------------g~~~iRi~~~~~~t~e~i~~~l~~l~ 442 (449)
T 2cjg_A 412 IVLPA---------------------------GADTVRFRPPLTVSTAEIDAAIAAVR 442 (449)
T ss_dssp ECEEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 33322 14789999887666665555555554
No 215
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.72 E-value=2e-16 Score=168.47 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=125.6
Q ss_pred CCcEEEeCChHHHHHHHHHH---hccCCCEEEEcCCCccchHHHHHhhc------c-cCCc------EEEEeCCCCHHHH
Q 009604 215 AESTVIMASGMSASTVMLLA---LVPAGGHIVTTTDCYRKTRIFIETVL------P-KMGI------TATVIDPADMEGL 278 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~a---ll~pGD~VIv~~~~y~~t~~~~~~~l------~-~~Gi------~v~~vd~~d~e~L 278 (531)
.+++++++||++|+.++++. +.+ +++||+..+.|++......... . ..|+ .+..++..|+++|
T Consensus 113 ~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l 191 (453)
T 2cy8_A 113 IRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGM 191 (453)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEECTTCHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHH
Confidence 57789999999999999987 555 4678888888876433211100 0 1233 2445566799999
Q ss_pred HHhccC--CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccccCCcEEEECCcc
Q 009604 279 EAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATK 347 (531)
Q Consensus 279 e~al~~--~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~gaDivv~S~sK 347 (531)
++++++ .++++|+++.++|++|.+.+ +++|.++|++||++||+||+|..... ........|++ |++|
T Consensus 192 e~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK 269 (453)
T 2cy8_A 192 REVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPDLT--CLAK 269 (453)
T ss_dssp HHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCCSEE--EEEG
T ss_pred HHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCCcEE--EECh
Confidence 999873 24888888777788998887 99999999999999999999873211 11122346765 7889
Q ss_pred ccccCCCceEEEEEeChHHHHHHHH---HhhhcC--CCchHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHc
Q 009604 348 FIGGHNDVLAGSISGSGKLVTQIRN---LHHVLG--GALNPNAAYLIIRGMKT-L-HLRVQQQNSTALRMAKILEA 416 (531)
Q Consensus 348 ~lgg~g~v~gG~iv~~~~li~~l~~---~~~~~G--~~~s~~~a~l~l~~L~t-l-~~r~~~~~~na~~La~~L~~ 416 (531)
.+++ | ..+|++++++++++.+.. .....+ ...++..++.+...++. + ....++..++.+.+.+.|++
T Consensus 270 ~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 343 (453)
T 2cy8_A 270 ASAG-G-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNH 343 (453)
T ss_dssp GGGT-T-SSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhC-C-cceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 9996 3 347899999888776643 111111 23456666666666665 3 33445556667777776654
No 216
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=166.75 Aligned_cols=263 Identities=13% Similarity=0.047 Sum_probs=175.1
Q ss_pred cEEEe-CChHHHHHHHHHHhccC--CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCcE
Q 009604 217 STVIM-ASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNVS 288 (531)
Q Consensus 217 ~~i~~-sSG~~Ai~~al~all~p--GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~e~Le~al~~~~tk 288 (531)
+++++ ++|++++++++..++.+ ||+|++....+.+. .++ ..+++.|..+..++.+ ++++++.++++ +|+
T Consensus 78 evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~-~~~-~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~-~t~ 154 (377)
T 3e77_A 78 KVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSA-KAA-EEAKKFGTINIVHPKLGSYTKIPDPSTWNLNP-DAS 154 (377)
T ss_dssp EEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHH-HHH-HHHTTTSEEEECSCCCSSSCSCCCGGGCCCCT-TCS
T ss_pred eEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHH-HHH-HHHHHhCCceEEeccCCCcCCCCChHHhccCC-Ccc
Confidence 46664 57789999999999875 99998877766653 333 5678889887765532 45667777777 499
Q ss_pred EEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCC-ccccccccCCcEEEECCccccccCCCceEEEEEeChHHH
Q 009604 289 LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV 367 (531)
Q Consensus 289 lV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~-~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li 367 (531)
+|.+.+..|.+|.+.|+ +|+++|+++++|.+++.+ .+.+..++| +++.|.+|++|+.| .|+++.+++++
T Consensus 155 lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G---~g~l~~~~~~l 224 (377)
T 3e77_A 155 YVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAG---VTVVIVRDDLL 224 (377)
T ss_dssp CEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTT---CEEEEEETTSC
T ss_pred EEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCc---cEEEEEcHHHH
Confidence 99998888889999998 478899999999998765 344554554 68899999998777 57777665543
Q ss_pred HHHH----------HHh--hhcCCCchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC
Q 009604 368 TQIR----------NLH--HVLGGALNPNAAYLIIRGMKTL------HLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK 429 (531)
Q Consensus 368 ~~l~----------~~~--~~~G~~~s~~~a~l~l~~L~tl------~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~ 429 (531)
+++. ... .....+.+....+.+..+++.+ ..+.++..+.++++.+.|++.|++. + .+.
T Consensus 225 ~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~-~-~~~-- 300 (377)
T 3e77_A 225 GFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFY-V-CPV-- 300 (377)
T ss_dssp SCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSE-E-CCS--
T ss_pred hhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCce-e-cCC--
Confidence 2211 010 1112344444444444444433 3444556677788888888877653 2 221
Q ss_pred CCchhhhhhhhcCCcccEEEEEEcCC--HHHH-HHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCC
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVDGD--LTAT-IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 506 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~g~--~~~~-~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~ 506 (531)
.+.+ ..+.+++|.+++- .++. ..|++.++..++.+..|. . ..+
T Consensus 301 -~~~~--------rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~-------------~------------~~g 346 (377)
T 3e77_A 301 -EPQN--------RSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGH-------------R------------SVG 346 (377)
T ss_dssp -CGGG--------BCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCC-------------T------------TTC
T ss_pred -CHHH--------cCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCC-------------C------------cCC
Confidence 1111 1356799999862 1222 467777765565543331 0 124
Q ss_pred eEEEEecCCCHHHHHHHHHHHHHh
Q 009604 507 LVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 507 lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.+|+|++..++++.|+.|.++|++
T Consensus 347 ~iRiS~~~~~t~edId~l~~al~~ 370 (377)
T 3e77_A 347 GIRASLYNAVTIEDVQKLAAFMKK 370 (377)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999988874
No 217
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.70 E-value=8.8e-16 Score=164.07 Aligned_cols=267 Identities=13% Similarity=0.113 Sum_probs=159.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhc----------ccCCcEEEEeCCC----C----
Q 009604 215 AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL----------PKMGITATVIDPA----D---- 274 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all--~pGD~VIv~~~~y~~t~~~~~~~l----------~~~Gi~v~~vd~~----d---- 274 (531)
.+++++++||++|+..+++.+. ..+++||+..+.|++........- ......+..++.. |
T Consensus 125 ~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (453)
T 4ffc_A 125 DKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGL 204 (453)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTC
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCcccc
Confidence 3679999999999999997654 245899999999887543322111 1111133344322 2
Q ss_pred ---------HHHHHHhccCCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCcc------ccccc
Q 009604 275 ---------MEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN------QKALS 335 (531)
Q Consensus 275 ---------~e~Le~al~~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~~------~~~l~ 335 (531)
+++|++++.++++++|++|..++..|.+.+ +++|.++|++||++||+||+|..... .....
T Consensus 205 ~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~ 284 (453)
T 4ffc_A 205 TGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEG 284 (453)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHT
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcC
Confidence 366777775544666666555445566665 99999999999999999999863211 11122
Q ss_pred cCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 009604 336 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAKI 413 (531)
Q Consensus 336 ~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~La~~ 413 (531)
...|++ +++|.+++ |. ..|++++++++++.+...........++..+..++..++.+. ..+++..++.+++.+.
T Consensus 285 ~~pdi~--t~sK~~~~-G~-~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 360 (453)
T 4ffc_A 285 IVPDIV--TMAKGIAG-GM-PLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSR 360 (453)
T ss_dssp CCCSEE--EECGGGGT-TS-SCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCcchH--hhhhhhcC-Cc-CeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 335665 47799987 53 467888888888776543322223345666655555555432 2234444455555554
Q ss_pred HH----cCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcC------CHHHHHHHHHHcCCCCcccccCCcccccc
Q 009604 414 LE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------DLTATIKFIDALKIPYIAPSFGGCESIVD 483 (531)
Q Consensus 414 L~----~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g------~~~~~~~fl~~L~~~~iavS~Gg~~Sli~ 483 (531)
|+ +++.+..+ ++.|.+++|++.. ......++.+.|...++.+..++.
T Consensus 361 l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----- 417 (453)
T 4ffc_A 361 LSALAEEVDIIGEV------------------RGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT----- 417 (453)
T ss_dssp HHHHHHHCSSEEEE------------------EEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT-----
T ss_pred HHHHHhhCCCeEEE------------------EeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC-----
Confidence 44 34433222 2357799998842 234566777776554544433211
Q ss_pred cCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009604 484 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 528 (531)
Q Consensus 484 ~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL 528 (531)
.++.+||++.+-.+++.++.+.++|
T Consensus 418 --------------------~~~~iRi~~~~~~t~e~i~~~l~~l 442 (453)
T 4ffc_A 418 --------------------FGNVIRLLPPLVIGDDLLDEGITAL 442 (453)
T ss_dssp --------------------TSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred --------------------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 2468999988765555444444444
No 218
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.70 E-value=1.7e-16 Score=167.79 Aligned_cols=199 Identities=17% Similarity=0.200 Sum_probs=132.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc--CCCEEEEcCCCccchHHHHHhh---------cc-cCCc------EEEEeCCCCH
Q 009604 214 GAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV---------LP-KMGI------TATVIDPADM 275 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~--pGD~VIv~~~~y~~t~~~~~~~---------l~-~~Gi------~v~~vd~~d~ 275 (531)
+.+++++++||++|+..+++.+.. ++++|++..+.|++........ .. ..++ .+..++..|+
T Consensus 108 ~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 187 (429)
T 3k28_A 108 SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDL 187 (429)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCH
Confidence 357899999999999999987654 6789999888887633111000 00 0011 3444556689
Q ss_pred HHHHHhccC--CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc-----cccccccCCcEEEEC
Q 009604 276 EGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLVLHS 344 (531)
Q Consensus 276 e~Le~al~~--~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~-----~~~~l~~gaDivv~S 344 (531)
++|++++++ .++++|+++.++|++|.+.+ +++|.++|++||++||+||+|.... .........|++ +
T Consensus 188 ~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~--t 265 (429)
T 3k28_A 188 ESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLT--C 265 (429)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--E
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCcee--h
Confidence 999998862 24789999888888898888 9999999999999999999986421 011223345665 5
Q ss_pred CccccccCCCceEEEEEeChHHHHHHHHHhh-hcC--CCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Q 009604 345 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTL-HLRVQQQNSTALRMAKILEA 416 (531)
Q Consensus 345 ~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~-~~G--~~~s~~~a~l~l~~L~tl-~~r~~~~~~na~~La~~L~~ 416 (531)
++|.+++ | ...|++++++++++.+..... ..+ ...++..+..++..++.+ ....++..++.+.+.+.|++
T Consensus 266 ~sK~~~~-G-~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~l~~~L~~ 339 (429)
T 3k28_A 266 LGKVIGG-G-LPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRK 339 (429)
T ss_dssp ECGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcC-C-CCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899975 4 346888899988877654221 122 234566655555555533 34445556666777766654
No 219
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.69 E-value=3e-16 Score=165.80 Aligned_cols=241 Identities=15% Similarity=0.140 Sum_probs=151.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHH----------hhcccCC------cEEEEeCCCCH
Q 009604 214 GAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKMG------ITATVIDPADM 275 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all--~pGD~VIv~~~~y~~t~~~~~----------~~l~~~G------i~v~~vd~~d~ 275 (531)
+.+++++++||++|+.++++... ..+++||+..+.|++...... ......+ ..+..++..|+
T Consensus 108 ~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 187 (429)
T 4e77_A 108 TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDL 187 (429)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCH
Confidence 35789999999999999988543 356788888888877542110 0000111 13455666799
Q ss_pred HHHHHhccC--CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCC---cc--ccccccCCcEEEEC
Q 009604 276 EGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---LN--QKALSLGADLVLHS 344 (531)
Q Consensus 276 e~Le~al~~--~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~---~~--~~~l~~gaDivv~S 344 (531)
++|++++++ .++++|+++..++++|.+.+ +++|.++|++||++||+||+|... .. ........|++ |
T Consensus 188 ~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t 265 (429)
T 4e77_A 188 ASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--C 265 (429)
T ss_dssp HHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--E
T ss_pred HHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCee--e
Confidence 999999873 24788887666666777777 999999999999999999998732 11 12223345765 6
Q ss_pred CccccccCCCceEEEEEeChHHHHHHHHHhh-hcC--CCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcC--
Q 009604 345 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEAH-- 417 (531)
Q Consensus 345 ~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~-~~G--~~~s~~~a~l~l~~L~tl--~~r~~~~~~na~~La~~L~~~-- 417 (531)
++|.+++ | ..+|++++++++++.+..... ..+ ...++..+..++..++.+ ...+++..++.+.+.+.|++.
T Consensus 266 ~sK~~~~-G-~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 343 (429)
T 4e77_A 266 LGKIIGG-G-MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAK 343 (429)
T ss_dssp EEGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccC-C-CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 7899985 4 357889999988877654211 112 245666666666666654 233455556666666666542
Q ss_pred --CCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC-------------HHHHHHHHHHcCCCCcccccC
Q 009604 418 --PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------------LTATIKFIDALKIPYIAPSFG 476 (531)
Q Consensus 418 --p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~-------------~~~~~~fl~~L~~~~iavS~G 476 (531)
+.+.. ..+.|.+++|++... .....+|.+.|...++.+..+
T Consensus 344 ~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~ 399 (429)
T 4e77_A 344 EENIPLV------------------VNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPS 399 (429)
T ss_dssp HTTCCCE------------------EEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSS
T ss_pred hCCCceE------------------EEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeec
Confidence 22111 123578899998643 133466777775555555443
No 220
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.69 E-value=8.6e-17 Score=168.89 Aligned_cols=259 Identities=12% Similarity=-0.010 Sum_probs=166.4
Q ss_pred cEEE-eCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC--------CHHHHHHhccCCCc
Q 009604 217 STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--------DMEGLEAALNNNNV 287 (531)
Q Consensus 217 ~~i~-~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--------d~e~Le~al~~~~t 287 (531)
++++ +++||+++++++..++++||+|++....+.+. .+. ..+++.| ++.+++.+ ++++++.++++ +|
T Consensus 92 evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~-~~~-~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~-~t 167 (386)
T 3qm2_A 92 KVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAA-SAI-KEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSD-NA 167 (386)
T ss_dssp EEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHH-HHH-HHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCT-TC
T ss_pred eEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHH-HHH-HHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCC-CC
Confidence 4666 47889999999999999999987655555543 233 4467778 77776533 45677888887 49
Q ss_pred EEEEEeCCCCCCCcc-cCHHHHHHHHHhcCCEEEEeCCCCCC-ccccccccCCcEEEECCccccccCCCceEEEEEeChH
Q 009604 288 SLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 365 (531)
Q Consensus 288 klV~lesP~NPtG~v-~dl~~I~~la~~~gi~lIvD~a~a~~-~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~ 365 (531)
++|.+.+..|.+|.+ .|+++|. +|+++++|.+++.+ .+.+..++| +++.|.+|++|+.| .|+++.+++
T Consensus 168 ~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G---~g~l~v~~~ 237 (386)
T 3qm2_A 168 AYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAG---LTLVIVRED 237 (386)
T ss_dssp SCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTT---EEEEEEEGG
T ss_pred cEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCc---cEEEEECHH
Confidence 999998888888996 8888885 79999999998765 344544554 67799999998777 688887766
Q ss_pred HHHHHHH----------Hh---hhcCCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCceEEeCC
Q 009604 366 LVTQIRN----------LH---HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRMAKILEAHPKVKRVHYP 426 (531)
Q Consensus 366 li~~l~~----------~~---~~~G~~~s~~~a~l~l~~L~t------l~~r~~~~~~na~~La~~L~~~p~v~~V~~p 426 (531)
+++++.. .. ...| +.+....+.+..+++. +..+.++..+.++++.+.|++.+ +. ..+
T Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~g-Tp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~-~~--~~~ 313 (386)
T 3qm2_A 238 LLGKAHESCPSILDYTVLNDNDSMFN-TPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FY--RND 313 (386)
T ss_dssp GCSCCCTTSCGGGCHHHHHHC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS-SE--ECC
T ss_pred HHhhhcccCCcHHHHHHHhhcCCCCC-CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-Cc--ccC
Confidence 5322110 00 0111 2222222323333333 23334455566677777777652 21 111
Q ss_pred CCCCCchhhhhhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCC
Q 009604 427 GLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDN 506 (531)
Q Consensus 427 gl~s~p~~~l~~~~~~g~g~ivsf~l~g~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~ 506 (531)
. .+.+ ..+++++|.+++...+ ..++..|+..++.+..|..+ .+
T Consensus 314 ~---~~~~--------rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g~~~-------------------------~~ 356 (386)
T 3qm2_A 314 V---AQAN--------RSRMNVPFQLADNTLD-KVFLEESFAAGLHALKGHRV-------------------------VG 356 (386)
T ss_dssp B---CGGG--------BCSSEEEEEESSGGGH-HHHHHHHHHTTEECCBCCTT-------------------------TC
T ss_pred C---CHHH--------cCceEEEEECCCcccc-HHHHHHHHHCCCEEeCCCCC-------------------------cC
Confidence 1 1111 1357999999852223 56777776666655433110 13
Q ss_pred eEEEEecCCCHHHHHHHHHHHHHh
Q 009604 507 LVRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 507 lIRlSvGlE~~edli~dL~~AL~~ 530 (531)
.+|+|++..++++.|+.|.++|++
T Consensus 357 ~iRiS~~~~~t~edId~l~~~l~~ 380 (386)
T 3qm2_A 357 GMRASIYNAMPIEGVKALTDFMID 380 (386)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999998875
No 221
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.69 E-value=1.9e-15 Score=162.56 Aligned_cols=222 Identities=14% Similarity=0.136 Sum_probs=142.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc--------CCCEEEEcCCCccchHHHHHhh---------cccCCcEEEEeCCC---
Q 009604 214 GAESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV---------LPKMGITATVIDPA--- 273 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~--------pGD~VIv~~~~y~~t~~~~~~~---------l~~~Gi~v~~vd~~--- 273 (531)
+.+.+++++||++|+..+++.+.. ++++||+..+.|++........ +. ....+..++..
T Consensus 115 ~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~-~~~~~~~v~~p~~~ 193 (472)
T 3hmu_A 115 DLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG-LIPDVHHINQPNWW 193 (472)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC-CCSSEEEECCCCHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC-CCCCcEEeCCCccc
Confidence 356899999999999999988764 4689999999987743221111 11 11123333311
Q ss_pred ------C--------HHHHHHhccC---CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCcc--
Q 009604 274 ------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-- 330 (531)
Q Consensus 274 ------d--------~e~Le~al~~---~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~~-- 330 (531)
| +++|++++++ .++++|++|.++|++|.+.+ +++|.++|+++|++||+||+|.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G 273 (472)
T 3hmu_A 194 AEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG 273 (472)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccC
Confidence 2 7888888861 24899999999999999887 99999999999999999999763211
Q ss_pred ----ccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcC--CCchHHHHHHHHHHHHHHH--HHHHH
Q 009604 331 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GALNPNAAYLIIRGMKTLH--LRVQQ 402 (531)
Q Consensus 331 ----~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G--~~~s~~~a~l~l~~L~tl~--~r~~~ 402 (531)
........|+++ ++|.+++.+.. .|++++++++++.+.......+ ...++..+..++..|+.+. ..+++
T Consensus 274 ~~~a~~~~~v~pdi~t--~sK~l~gg~~p-lG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~ 350 (472)
T 3hmu_A 274 NWFGTQTMGIRPHIMT--IAKGLSSGYAP-IGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDH 350 (472)
T ss_dssp SSCHHHHHTCCCSEEE--ECGGGTTTSSC-CEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccchhHHhCCCCceee--echhhhcCCcc-eEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 122233467775 66999875433 5778888888888732111222 2345666666666666543 23455
Q ss_pred HH-HHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcC
Q 009604 403 QN-STALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG 454 (531)
Q Consensus 403 ~~-~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g 454 (531)
.. ++.+++.+.|++... +|.+ ...++.|.++.|++..
T Consensus 351 ~~~~~~~~l~~~L~~l~~-----~~~v----------~~vr~~G~~~~i~~~~ 388 (472)
T 3hmu_A 351 VRNVAAPYLKEKWEALTD-----HPLV----------GEAKIVGMMASIALTP 388 (472)
T ss_dssp HHHTHHHHHHHHHHGGGG-----STTE----------EEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHhc-----CCCe----------EEEEecCceEEEEEec
Confidence 55 566677777754311 1111 1113467899999864
No 222
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.69 E-value=4.6e-15 Score=159.64 Aligned_cols=223 Identities=13% Similarity=0.116 Sum_probs=143.4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcc--------CCCEEEEcCCCccchHHHHHhh---------cccCCcEEEEeCC----
Q 009604 214 GAESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV---------LPKMGITATVIDP---- 272 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all~--------pGD~VIv~~~~y~~t~~~~~~~---------l~~~Gi~v~~vd~---- 272 (531)
+.+.+++++||++|+..+++.+.+ .++.||+.++.|++........ .....-.+.+++.
T Consensus 113 ~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 192 (476)
T 3i5t_A 113 DLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPR 192 (476)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGG
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccc
Confidence 346899999999999999988753 3578999999988754222111 0001112333331
Q ss_pred ---C-C--------HHHHHHhccC---CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCc----
Q 009604 273 ---A-D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL---- 329 (531)
Q Consensus 273 ---~-d--------~e~Le~al~~---~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~---- 329 (531)
+ + +++|++++++ .++++|++|.++|++|.+.+ +++|.++|++||++||+||++....
T Consensus 193 ~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~ 272 (476)
T 3i5t_A 193 HAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE 272 (476)
T ss_dssp GCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC
Confidence 1 1 7888888862 24899999999999997665 9999999999999999999976321
Q ss_pred c--cc-ccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHh-------hhcCCCchHHHHHHHHHHHHHHH--
Q 009604 330 N--QK-ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGMKTLH-- 397 (531)
Q Consensus 330 ~--~~-~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~-------~~~G~~~s~~~a~l~l~~L~tl~-- 397 (531)
. .. ......|+++ ++|.+++ |-...|++++++++++.+.... .......++..+..++..|+.+.
T Consensus 273 ~~~~~~~~~v~pdi~t--~sK~l~~-G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~ 349 (476)
T 3i5t_A 273 WFASEKVFGVVPDIIT--FAKGVTS-GYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMERE 349 (476)
T ss_dssp SCHHHHTTCCCCSEEE--ECGGGGT-TSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred ceeeecccCCCcchhh--hhhhhcC-CCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhH
Confidence 1 11 2233467775 6799986 3134678888998888776431 11122345666666666666543
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcC
Q 009604 398 LRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG 454 (531)
Q Consensus 398 ~r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g 454 (531)
..+++..++.+++.+.|++... +|.. ...++.|.++.|++..
T Consensus 350 ~~~~~~~~~~~~l~~~L~~l~~-----~~~v----------~~v~~~G~~~~i~~~~ 391 (476)
T 3i5t_A 350 GIVDQAREMADYFAAALASLRD-----LPGV----------AETRSVGLVGCVQCLL 391 (476)
T ss_dssp THHHHHHHHHHHHHHHHHTTTT-----STTE----------EEEEEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CCCe----------EEEEecCceeEEEEec
Confidence 2345556677777777764321 1111 1123467889999864
No 223
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.69 E-value=8.2e-16 Score=162.15 Aligned_cols=239 Identities=17% Similarity=0.151 Sum_probs=152.3
Q ss_pred CCcEEEeCChHHHHHHHHHH--hccCCCEEEEcCCCccchHHHHHhhc----------ccCCc------EEEEeCCCCHH
Q 009604 215 AESTVIMASGMSASTVMLLA--LVPAGGHIVTTTDCYRKTRIFIETVL----------PKMGI------TATVIDPADME 276 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~a--ll~pGD~VIv~~~~y~~t~~~~~~~l----------~~~Gi------~v~~vd~~d~e 276 (531)
.+++++++||++|+.++++. .+..+|.||+.++.|++......... ...|+ .+..++..|++
T Consensus 108 ~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~ 187 (424)
T 2e7u_A 108 VDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPE 187 (424)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHH
Confidence 57789999999999999885 23345788888888877432110000 01232 34556667999
Q ss_pred HHHHhccC--CCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCcc-----ccccccCCcEEEECC
Q 009604 277 GLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSA 345 (531)
Q Consensus 277 ~Le~al~~--~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~~-----~~~l~~gaDivv~S~ 345 (531)
+|++++++ .++++|+++..++++|.+.+ +++|.++ ++||++||+||+|..... ........|++ |+
T Consensus 188 ~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~ 264 (424)
T 2e7u_A 188 GLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPDLV--TL 264 (424)
T ss_dssp HHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EE
T ss_pred HHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcchh--hh
Confidence 99999863 24777777554455898887 9999999 999999999999873311 11122346765 78
Q ss_pred ccccccCCCceEEEEEeChHHHHHHHHHhh-hcCC--CchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcC--
Q 009604 346 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTLHL---RVQQQNSTALRMAKILEAH-- 417 (531)
Q Consensus 346 sK~lgg~g~v~gG~iv~~~~li~~l~~~~~-~~G~--~~s~~~a~l~l~~L~tl~~---r~~~~~~na~~La~~L~~~-- 417 (531)
+|.+++ | ..+|++++++++++.+..... ..+. ..++..+..+...++.+.. ..++..++.+.+.+.|++.
T Consensus 265 sK~l~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 342 (424)
T 2e7u_A 265 GKILGG-G-LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLK 342 (424)
T ss_dssp CGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhC-C-cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 899996 4 347889999888876654111 1221 3456665555556655432 4556666777777777653
Q ss_pred --CCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC------------HHHHHHHHHHcCCCCcccccC
Q 009604 418 --PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------------LTATIKFIDALKIPYIAPSFG 476 (531)
Q Consensus 418 --p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~------------~~~~~~fl~~L~~~~iavS~G 476 (531)
+.+.. ..+.|.+++|++... .....+|.+.|...++.+..|
T Consensus 343 ~~~~~~~------------------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 397 (424)
T 2e7u_A 343 EKGLPHT------------------VNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPS 397 (424)
T ss_dssp HTTCCCE------------------EEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSS
T ss_pred hCCCceE------------------EEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEecc
Confidence 21111 123577999998641 234567777776556555543
No 224
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.68 E-value=3.1e-16 Score=165.44 Aligned_cols=198 Identities=18% Similarity=0.224 Sum_probs=131.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHH----------hhcccCCc------EEEEeCCCCHH
Q 009604 215 AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKMGI------TATVIDPADME 276 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all--~pGD~VIv~~~~y~~t~~~~~----------~~l~~~Gi------~v~~vd~~d~e 276 (531)
.++++++++|++|+.++++... ..+++||+..+.|++...... ......|+ .+..++..|++
T Consensus 108 ~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 187 (427)
T 3fq8_A 108 IEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLE 187 (427)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHH
Confidence 5789999999999999985321 345788888888876321110 00001121 24455666999
Q ss_pred HHHHhccCC--CcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCC---cc--ccccccCCcEEEECC
Q 009604 277 GLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---LN--QKALSLGADLVLHSA 345 (531)
Q Consensus 277 ~Le~al~~~--~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~---~~--~~~l~~gaDivv~S~ 345 (531)
+|+++++++ ++++|+++.++|++|.+.+ +++|.++|++||++||+||+|... .. ........|++ |+
T Consensus 188 ~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~--t~ 265 (427)
T 3fq8_A 188 AVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLT--TL 265 (427)
T ss_dssp HHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEE--EE
T ss_pred HHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChh--hh
Confidence 999998752 4899999999999999998 999999999999999999998732 11 11222345665 56
Q ss_pred ccccccCCCceEEEEEeChHHHHHHHHHhh-hcCC--CchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Q 009604 346 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEA 416 (531)
Q Consensus 346 sK~lgg~g~v~gG~iv~~~~li~~l~~~~~-~~G~--~~s~~~a~l~l~~L~tl--~~r~~~~~~na~~La~~L~~ 416 (531)
+|.+++ | ..+|++++++++++.+..... ..+. ..++..+..+...++.+ ...+++..++.+.+.+.|++
T Consensus 266 sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (427)
T 3fq8_A 266 GKIIGG-G-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLA 339 (427)
T ss_dssp CGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhC-C-cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 799985 4 357888999988877654211 1232 23566666666566544 23345555666666666654
No 225
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.65 E-value=1.7e-15 Score=157.63 Aligned_cols=257 Identities=11% Similarity=-0.006 Sum_probs=165.6
Q ss_pred cEEE-eCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC-------CHHHHHHhccCCCcE
Q 009604 217 STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-------DMEGLEAALNNNNVS 288 (531)
Q Consensus 217 ~~i~-~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-------d~e~Le~al~~~~tk 288 (531)
+++| +++|++++++++..++ +||+++.....+.+. .+. ..+++.|+++++++.+ ++++ + |++ +|+
T Consensus 70 ~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~-~~~-~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~-~t~ 142 (361)
T 3m5u_A 70 EVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTK-KAI-KEAQILGVNVKTVASSEESNFDHIPRV--E-FSD-NAD 142 (361)
T ss_dssp EEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHH-HHH-HHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCT-TSS
T ss_pred eEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHH-HHH-HHHHHcCCceEEEecccCcCCCcCChh--h-cCC-CCC
Confidence 4666 5677799999999998 888652211122222 233 3456678887776421 3444 4 777 499
Q ss_pred EEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCc-cccccccCCcEEEECCccccccCCCceEEEEEeChHHH
Q 009604 289 LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV 367 (531)
Q Consensus 289 lV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~-~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li 367 (531)
+|.+.+..|.+|.+.|. +++ +|+++++|.+++.+. +.+.. ..|+++.|.+|++|++| .|+++.+++++
T Consensus 143 lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~K~~gp~G---~g~l~~~~~~~ 211 (361)
T 3m5u_A 143 YAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQKNAGISG---LSCIFIRKDML 211 (361)
T ss_dssp EEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETTTTSSCTT---CEEEEEEHHHH
T ss_pred EEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEechhccCCCc---cEEEEEcHHHH
Confidence 99998888888998772 344 499999999987653 23332 36899999999998777 68888888887
Q ss_pred HHHHH--------Hh-----hhcCCCchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCCCceEEeCCCC
Q 009604 368 TQIRN--------LH-----HVLGGALNPNAAYLIIRGMKTL------HLRVQQQNSTALRMAKILEAHPKVKRVHYPGL 428 (531)
Q Consensus 368 ~~l~~--------~~-----~~~G~~~s~~~a~l~l~~L~tl------~~r~~~~~~na~~La~~L~~~p~v~~V~~pgl 428 (531)
+++.. +. .....+.+....+.+..+++.+ +.+.++..+.++++.+.|++.+++.....+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~-- 289 (361)
T 3m5u_A 212 ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD-- 289 (361)
T ss_dssp HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC--
T ss_pred hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC--
Confidence 76643 00 0111244444444444455433 333455556777788888887755222211
Q ss_pred CCCchhhhhhhhcCCcccEEEEEEcC-CHHHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCe
Q 009604 429 KSHPEHHIATQQMTGFGGVVSFEVDG-DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL 507 (531)
Q Consensus 429 ~s~p~~~l~~~~~~g~g~ivsf~l~g-~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~l 507 (531)
+.+ ..+++++|.+++ ...+ ..++..|+..++.+..|.. . .+.
T Consensus 290 ---~~~--------rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~-------------~------------~g~ 332 (361)
T 3m5u_A 290 ---KKD--------RSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHR-------------I------------LGG 332 (361)
T ss_dssp ---GGG--------BCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCT-------------T------------TCS
T ss_pred ---HHH--------cCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCC-------------c------------cCe
Confidence 111 135799999986 2222 4677777666666544411 0 135
Q ss_pred EEEEecCCCHHHHHHHHHHHHHh
Q 009604 508 VRFSFGVEDFEDLKADVLQALHA 530 (531)
Q Consensus 508 IRlSvGlE~~edli~dL~~AL~~ 530 (531)
+|+|++..++++.|+.|.++|++
T Consensus 333 iRiS~~~~~t~edId~l~~al~~ 355 (361)
T 3m5u_A 333 IRASIYNALNLDQVKTLCEFMKE 355 (361)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 226
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.63 E-value=7.7e-15 Score=157.76 Aligned_cols=263 Identities=14% Similarity=0.146 Sum_probs=157.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc-------c------------------CC---CEEEEcCCCccchHHHHHhhcc----
Q 009604 214 GAESTVIMASGMSASTVMLLALV-------P------------------AG---GHIVTTTDCYRKTRIFIETVLP---- 261 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all-------~------------------pG---D~VIv~~~~y~~t~~~~~~~l~---- 261 (531)
+.+.+++++||++|+..+++.+. + || ++||+.++.|++..........
T Consensus 126 ~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~ 205 (472)
T 1ohv_A 126 GMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI 205 (472)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHH
T ss_pred CcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccc
Confidence 35689999999999999998663 1 46 8999999988774322211111
Q ss_pred -cCCcE-----EEEeC----C-------------CCHHHHHHhccCC-----CcEEEEEeCCCCCCCcccC----HHHHH
Q 009604 262 -KMGIT-----ATVID----P-------------ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD----VKLVS 309 (531)
Q Consensus 262 -~~Gi~-----v~~vd----~-------------~d~e~Le~al~~~-----~tklV~lesP~NPtG~v~d----l~~I~ 309 (531)
..+.. ...++ . .|+++|+++|++. ++++|++|+.+|++|.+++ +++|.
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~ 285 (472)
T 1ohv_A 206 HKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLR 285 (472)
T ss_dssp HHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHH
T ss_pred cccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHH
Confidence 11111 11111 0 1578899888751 4899999998899999887 99999
Q ss_pred HHHHhcCCEEEEeCCCCC-Ccc---ccccccC----CcEEEECCccc-cccCCCceEEEEEeChHHHHHHHHHhhhcCC-
Q 009604 310 DLCHKKGAIVCIDGTFAT-PLN---QKALSLG----ADLVLHSATKF-IGGHNDVLAGSISGSGKLVTQIRNLHHVLGG- 379 (531)
Q Consensus 310 ~la~~~gi~lIvD~a~a~-~~~---~~~l~~g----aDivv~S~sK~-lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~- 379 (531)
++|++||++||+||+|.. +.. .....+| .|++ |++|. ++ ||+++ ++++. .+... ...+.
T Consensus 286 ~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~-~~~~~-~~~~~-~~~~T~ 354 (472)
T 1ohv_A 286 DISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH-KEEFR-PNAPY-RIFNTW 354 (472)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE-CGGGS-CSSSS-SSCCSS
T ss_pred HHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC-chhhc-ccccc-cccCcc
Confidence 999999999999999863 111 1111234 6766 57798 55 47766 55542 11111 11122
Q ss_pred CchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCceEEeCCC-CCCCchhhhhhhhcCCcccEEEEEEcCCH
Q 009604 380 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPG-LKSHPEHHIATQQMTGFGGVVSFEVDGDL 456 (531)
Q Consensus 380 ~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~La~~L~~~p~v~~V~~pg-l~s~p~~~l~~~~~~g~g~ivsf~l~g~~ 456 (531)
..++..+..++..++.+.. ..++..+..+.+.+.|++... .+|. + ...++.|.++.|++++ .
T Consensus 355 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~v----------~~~~~~g~~~~~~~~~-~ 419 (472)
T 1ohv_A 355 LGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQA----RYPQFI----------SRVRGRGTFCSFDTPD-E 419 (472)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH----HCTTTC----------EEEEEETTEEEEECSS-H
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh----hCCCcE----------EeecCCceEEEEEeCC-h
Confidence 2356655555555554422 234445556666666654210 1121 0 0012347789998864 2
Q ss_pred HHHHHHHHHcCCCCcccccCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 457 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 457 ~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
.....|.+.|...++.+..+ .++.|||++++..+++.++.+.++|+
T Consensus 420 ~~~~~~~~~l~~~Gv~~~~~---------------------------g~~~iRi~~~~~~t~e~i~~~~~~l~ 465 (472)
T 1ohv_A 420 SIRNKLISIARNKGVMLGGC---------------------------GDKSIRFRPTLVFRDHHAHLFLNIFS 465 (472)
T ss_dssp HHHHHHHHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566777764434322211 14689999998877777776666664
No 227
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.61 E-value=7.7e-15 Score=164.58 Aligned_cols=196 Identities=12% Similarity=0.146 Sum_probs=140.4
Q ss_pred CCCcEEEeCChH-HHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---------------CHHH
Q 009604 214 GAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---------------DMEG 277 (531)
Q Consensus 214 g~e~~i~~sSG~-~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---------------d~e~ 277 (531)
|+++++++++|+ .|+..++.++++|||+|++++++|.+++.. +...|+++.+++.. |+++
T Consensus 209 Ga~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~----l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~ 284 (715)
T 3n75_A 209 NADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHL----MMMSDVTPIYFRPTRNAYGILGGIPQSEFQHAT 284 (715)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHH
T ss_pred CCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEeccccccccccCcccccCCHHH
Confidence 899999999996 899999999999999999999999997754 34458888887642 7999
Q ss_pred HHHhccCC-CcE---EEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc-------cccccC--CcEE---
Q 009604 278 LEAALNNN-NVS---LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALSLG--ADLV--- 341 (531)
Q Consensus 278 Le~al~~~-~tk---lV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~-------~~l~~g--aDiv--- 341 (531)
|+++++++ ++| +|++++| |++|.+.|+++|.++|++++ +++|++|+..+.. .++..| +|++
T Consensus 285 Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~ 361 (715)
T 3n75_A 285 IAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYE 361 (715)
T ss_dssp HHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEE
T ss_pred HHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccccccccccCcCCCEEEEE
Confidence 99999742 244 8999999 89999999999999998764 7999998765421 223333 6766
Q ss_pred EECCccccccCCCceEEEEEeChHH-HHHHHHHhhhcC-CCchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 009604 342 LHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLG-GALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAKIL 414 (531)
Q Consensus 342 v~S~sK~lgg~g~v~gG~iv~~~~l-i~~l~~~~~~~G-~~~s~~~a~l~l~~L~-----tl~~r~~~~~~na~~La~~L 414 (531)
++|+||++++.. .+|++..++++ .+++......+. +.+++.....+..+++ .-..++++..++++++.+.|
T Consensus 362 ~~S~hKtL~glt--qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L 439 (715)
T 3n75_A 362 TQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEI 439 (715)
T ss_dssp EECHHHHSSCCT--TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccccCCC--CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 999999999753 26777765442 334444444443 3444433222222332 22345677778888888887
Q ss_pred HcCC
Q 009604 415 EAHP 418 (531)
Q Consensus 415 ~~~p 418 (531)
++.+
T Consensus 440 ~~i~ 443 (715)
T 3n75_A 440 KRLR 443 (715)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6653
No 228
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.33 E-value=3.1e-16 Score=168.47 Aligned_cols=221 Identities=15% Similarity=0.153 Sum_probs=139.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhhcccCCc--EEEEeCCCCHHHHHHhccC--CCcE
Q 009604 215 AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVIDPADMEGLEAALNN--NNVS 288 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all--~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi--~v~~vd~~d~e~Le~al~~--~~tk 288 (531)
.+.+++++||++|+..+++... ..+|+||+.+..|++............|+ .+..++..|+++|++++++ .+++
T Consensus 156 ~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~~~a 235 (465)
T 2yky_A 156 IDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCA 235 (465)
Confidence 4678999999999999987642 34589999999987743211100012244 3344556789999999973 2589
Q ss_pred EEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCCccc-----cccccCCcEEEECCccccccCCCceEEE
Q 009604 289 LFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALSLGADLVLHSATKFIGGHNDVLAGS 359 (531)
Q Consensus 289 lV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~~~~-----~~l~~gaDivv~S~sK~lgg~g~v~gG~ 359 (531)
+|++|.+.|++|.+.+ +++|.++|+++|++||+||++. +-.. .......|++ +++|.+++ | ...|+
T Consensus 236 avi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~-G-~piG~ 310 (465)
T 2yky_A 236 AILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGG-G-MSFGA 310 (465)
Confidence 9999987777998776 9999999999999999999998 4111 1111224554 78999997 4 45788
Q ss_pred EEeChHHHHHHHHH--h---hhcCCCchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCceEEeCCCCCCCc
Q 009604 360 ISGSGKLVTQIRNL--H---HVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHP 432 (531)
Q Consensus 360 iv~~~~li~~l~~~--~---~~~G~~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~La~~L~~~p~v~~V~~pgl~s~p 432 (531)
+++++++++.+... . .......++..+..++..|+.+.. ..++..+..+++.+.|++.. . .++.
T Consensus 311 v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~--~--~~~~----- 381 (465)
T 2yky_A 311 FGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIA--V--ENQA----- 381 (465)
Confidence 88999988877651 1 111122345555544445544321 23333444445555544321 0 0110
Q ss_pred hhhhhhhhcCCcccEEEEEEcC
Q 009604 433 EHHIATQQMTGFGGVVSFEVDG 454 (531)
Q Consensus 433 ~~~l~~~~~~g~g~ivsf~l~g 454 (531)
....++.|.+++|++.+
T Consensus 382 -----~~~v~g~G~~~~i~~~~ 398 (465)
T 2yky_A 382 -----PLQFTGLGSLGTIHFSR 398 (465)
Confidence 01124578899998853
No 229
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.54 E-value=8.5e-13 Score=139.95 Aligned_cols=195 Identities=15% Similarity=0.089 Sum_probs=118.6
Q ss_pred EEEeCChHHHHHHHHH----HhccCCCEEEEcCCCccchHHHHHhhcccCCcE-EEE---eCC----CCHHHHHHhcc--
Q 009604 218 TVIMASGMSASTVMLL----ALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATV---IDP----ADMEGLEAALN-- 283 (531)
Q Consensus 218 ~i~~sSG~~Ai~~al~----all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~-v~~---vd~----~d~e~Le~al~-- 283 (531)
.+.+.+|+.|+..++. .++.|||+|++++|.|......++ ..|.+ +.. .+. .|.+.+.+.+.
T Consensus 112 ~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~----~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~ 187 (420)
T 4h51_A 112 AVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVK----AAGWKNICTYAYYDPKTVSLNFEGMKKDILAA 187 (420)
T ss_dssp EEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHH----HTTCCCEEEEECEEGGGTEECHHHHHHHHHHS
T ss_pred eeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHH----HcCCeEEEeeccccccccCCCHHHHHHHHhcc
Confidence 4456777777666554 345799999999999987665443 23443 222 222 25666666553
Q ss_pred CCCcEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCEEEEeCCCCCCccc----cc------cccC-CcEEEECCcccc
Q 009604 284 NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA------LSLG-ADLVLHSATKFI 349 (531)
Q Consensus 284 ~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~lIvD~a~a~~~~~----~~------l~~g-aDivv~S~sK~l 349 (531)
..+++++++.+|+||||.+.+ +++|+++|+++++++++|++|...... .. .+.+ .-+++.|+||.+
T Consensus 188 ~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 267 (420)
T 4h51_A 188 PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNM 267 (420)
T ss_dssp CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccc
Confidence 224789999999999999986 668888899999999999998654321 11 1111 248889999999
Q ss_pred ccCCCceEEEEEeChHHH---H----HHHHHhhhcCCCchHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 009604 350 GGHNDVLAGSISGSGKLV---T----QIRNLHHVLGGALNPNAAYLIIRGM----------KTLHLRVQQQNSTALRMAK 412 (531)
Q Consensus 350 gg~g~v~gG~iv~~~~li---~----~l~~~~~~~G~~~s~~~a~l~l~~L----------~tl~~r~~~~~~na~~La~ 412 (531)
+..|.++ |++++..+.. . .+....+......+...+.++...+ +.+....++..+.++.|.+
T Consensus 268 ~~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~ 346 (420)
T 4h51_A 268 GLYSERA-GTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYD 346 (420)
T ss_dssp CCGGGCE-EEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCce-EEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888774 5555432222 2 2222222222333334333332222 1222233444566677777
Q ss_pred HHHcC
Q 009604 413 ILEAH 417 (531)
Q Consensus 413 ~L~~~ 417 (531)
.|++.
T Consensus 347 ~L~~~ 351 (420)
T 4h51_A 347 ELLRL 351 (420)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88764
No 230
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.53 E-value=1.6e-13 Score=145.04 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=131.5
Q ss_pred CcEEEeCChHHHHHHHHHHhccC----CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhcc
Q 009604 216 ESTVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALN 283 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~p----GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al~ 283 (531)
...++++.++.++.+++++.+++ ||.||+++.+|.+.+..+ ...|++++++++ .|+++|+++|+
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAl----iL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~ 210 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM----ITAGFEPVVIENVLEGDELRTDLKAVEAKVQ 210 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH----HHTTCEEEEECEEEETTEEEECHHHHHHHHH
T ss_pred CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHH----HHcCCeEEEEeeeecccccCCCHHHHHHHHH
Confidence 34566666666666666666664 499999999999977544 334777777754 27899999996
Q ss_pred CC---CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCcc------ccccccC-CcEEEECCccccccCC
Q 009604 284 NN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLG-ADLVLHSATKFIGGHN 353 (531)
Q Consensus 284 ~~---~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~------~~~l~~g-aDivv~S~sK~lgg~g 353 (531)
++ ...+|+.++++|..+.+.|+++|+++||+||++++|||+|+..+. ...+.+| +|+++.|.||.+--+-
T Consensus 211 e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpI 290 (501)
T 3hl2_A 211 ELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPV 290 (501)
T ss_dssp HHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCS
T ss_pred hcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeec
Confidence 53 234444444455445668999999999999999999999987542 2334568 9999999999986552
Q ss_pred CceEEEEEe-ChHHHHHHHHHhhhcCCCchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 009604 354 DVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAKILEAH 417 (531)
Q Consensus 354 ~v~gG~iv~-~~~li~~l~~~~~~~G~~~s~~~a~l~l--~~L~tl~~r~~~~~~na~~La~~L~~~ 417 (531)
+ ||++.. ++++++++.......-......+.|+.+ .|.+.+...+++..++++++.+.|++.
T Consensus 291 G--G~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l 355 (501)
T 3hl2_A 291 G--GAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL 355 (501)
T ss_dssp S--CEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--ceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 334434 5567766543221001122233345433 344566667778888888888888764
No 231
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.48 E-value=4.5e-12 Score=134.78 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=129.6
Q ss_pred cEEEeCChHHHHHHHHHHhccC----CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC--------CCHHHHHHhccC
Q 009604 217 STVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALNN 284 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~p----GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--------~d~e~Le~al~~ 284 (531)
..++++++|.++.+++++.+++ |+.||+++..|.+.+..+ ...|+...++++ .|+++|+++|++
T Consensus 118 ~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl----~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~ 193 (450)
T 3bc8_A 118 SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM----VTAGFEPVVIENVLEGDELRTDLKAVEAKIQE 193 (450)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH----HHTTCEEEEECCEEETTEEECCHHHHHHHHHH
T ss_pred eEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHH----HHcCCeeEEEEeeecCccCCcCHHHHHHHHHh
Confidence 3477777764444444444444 899999999999876443 445777777754 289999999965
Q ss_pred CC--cEEEEEeCCCC-CCCcccCHHHHHHHHHhcCCEEEEeCCCCCCccc------ccccc-CCcEEEECCccccccCCC
Q 009604 285 NN--VSLFFTESPTN-PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALSL-GADLVLHSATKFIGGHND 354 (531)
Q Consensus 285 ~~--tklV~lesP~N-PtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~~~------~~l~~-gaDivv~S~sK~lgg~g~ 354 (531)
++ .+++++.+|++ .+|.+.|+++|+++||+||++|+||++|+..... ..+.. ++|+++.|+||++..+-+
T Consensus 194 ~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~ 273 (450)
T 3bc8_A 194 LGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG 273 (450)
T ss_dssp HCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSS
T ss_pred cCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhc
Confidence 21 34555556654 3568899999999999999999999999864321 22233 799999999999886642
Q ss_pred ceEEEEEe-ChHHHHHHHHHhhhcCCCchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 009604 355 VLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAKILEAHP 418 (531)
Q Consensus 355 v~gG~iv~-~~~li~~l~~~~~~~G~~~s~~~a~l~l~--~L~tl~~r~~~~~~na~~La~~L~~~p 418 (531)
++++.. ++++++.+...........+....|..+. |.+.+...+++..++++++.+.|++.+
T Consensus 274 --~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~ 338 (450)
T 3bc8_A 274 --GAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA 338 (450)
T ss_dssp --CEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455554 55666555433211122222344444332 334455556666788888888887655
No 232
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.42 E-value=3e-12 Score=134.73 Aligned_cols=193 Identities=18% Similarity=0.164 Sum_probs=126.6
Q ss_pred EEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHH--HHh--hcccCCcEEEE----eCC----CCHHHHHHhccCCC
Q 009604 219 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF--IET--VLPKMGITATV----IDP----ADMEGLEAALNNNN 286 (531)
Q Consensus 219 i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~--~~~--~l~~~Gi~v~~----vd~----~d~e~Le~al~~~~ 286 (531)
+=.-||+.|+..++.++++|||+|+..+..+++-..- ... .....|.-+.. +|. .|.|++++...+.+
T Consensus 124 VQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~k 203 (490)
T 3ou5_A 124 VQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR 203 (490)
T ss_dssp CCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcC
Confidence 4467999999999999999999999998887763211 000 00001111111 121 38899998887667
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCC-----CCccccccccCCcEEEECCccccccCCCceEEEEE
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-----TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS 361 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a-----~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv 361 (531)
+|+|++-.-. .-...|.+++.+||++.|++|++|-++- .+...+|+.+ +|+|..|.||.|.|+. ||+|.
T Consensus 204 PklIi~G~Sa--Y~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVTtTTHKTLrGPr---GG~Il 277 (490)
T 3ou5_A 204 PRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIF 277 (490)
T ss_dssp CSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSSTTCSCS---CEEEE
T ss_pred CCeEEECCcc--CccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ceEEeccccccccCCC---ceEEE
Confidence 8999984433 4578899999999999999999999964 4556788887 9999999999999985 89998
Q ss_pred eCh---------------HHHHHHHHHh--hhcCCCchHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHcC
Q 009604 362 GSG---------------KLVTQIRNLH--HVLGGALNPNAAYLII---RGM-KTLHLRVQQQNSTALRMAKILEAH 417 (531)
Q Consensus 362 ~~~---------------~li~~l~~~~--~~~G~~~s~~~a~l~l---~~L-~tl~~r~~~~~~na~~La~~L~~~ 417 (531)
.++ ++.+++.... ...|+...-..+..+. ..+ .......++..+|++.|++.|.+.
T Consensus 278 ~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~ 354 (490)
T 3ou5_A 278 YRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER 354 (490)
T ss_dssp EECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 765 4556665432 2334332222222221 112 234566678889999999999876
No 233
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.34 E-value=2.9e-11 Score=129.24 Aligned_cols=218 Identities=16% Similarity=0.169 Sum_probs=142.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--cCCCEEEEcCCCccchHHHHHhh--cccCCcEEEEeCCCCHHHHHHhccCC--Cc
Q 009604 214 GAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV--LPKMGITATVIDPADMEGLEAALNNN--NV 287 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all--~pGD~VIv~~~~y~~t~~~~~~~--l~~~Gi~v~~vd~~d~e~Le~al~~~--~t 287 (531)
+.+.+.+++||++|+..+++... ...++||....+|++.....-.. ..........++.+|++++++.++++ ++
T Consensus 142 ~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~i 221 (454)
T 4ao9_A 142 QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEI 221 (454)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGGE
T ss_pred CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCCce
Confidence 45788999999999999987543 23467888888887732111000 01122345566788999999988642 48
Q ss_pred EEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCC----CccccccccCCcEEEECCccccccCCCceEEE
Q 009604 288 SLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PLNQKALSLGADLVLHSATKFIGGHNDVLAGS 359 (531)
Q Consensus 288 klV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~----~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~ 359 (531)
.+|++|...+..|.+.+ +++|.++|++||++||+||++.. ...+.....-.|+++ +.|.++|.. ..|+
T Consensus 222 AavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t--~gK~lggG~--Piga 297 (454)
T 4ao9_A 222 AVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT--LGKYIGGGM--SFGA 297 (454)
T ss_dssp EEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE--EEGGGGTTS--SCEE
T ss_pred EEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE--eccccCCCC--ccee
Confidence 99999999888898877 89999999999999999999752 111222333468876 789998653 4688
Q ss_pred EEeChHHHHHHHHHh--hhcCCC--chHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc----CCCceEEeCCCCC
Q 009604 360 ISGSGKLVTQIRNLH--HVLGGA--LNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAKILEA----HPKVKRVHYPGLK 429 (531)
Q Consensus 360 iv~~~~li~~l~~~~--~~~G~~--~s~~~a~l~l~~L~tl--~~r~~~~~~na~~La~~L~~----~p~v~~V~~pgl~ 429 (531)
+.+++++++.+.... ..++.+ -+|..+..++..|+.+ +..+++..++.++|.+.|++ ++.+..
T Consensus 298 ~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~------- 370 (454)
T 4ao9_A 298 FGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQ------- 370 (454)
T ss_dssp EEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCE-------
T ss_pred eeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEE-------
Confidence 889998887664311 112333 2466666666666654 23344455555666665543 332222
Q ss_pred CCchhhhhhhhcCCcccEEEEEEc
Q 009604 430 SHPEHHIATQQMTGFGGVVSFEVD 453 (531)
Q Consensus 430 s~p~~~l~~~~~~g~g~ivsf~l~ 453 (531)
.+|.|.|+.+++.
T Consensus 371 -----------vrg~G~m~gi~f~ 383 (454)
T 4ao9_A 371 -----------FTGIGSLMNAHFV 383 (454)
T ss_dssp -----------EEEETTEEEEESC
T ss_pred -----------EeeeceEEEEEEe
Confidence 2456788888874
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.33 E-value=1.7e-10 Score=123.40 Aligned_cols=278 Identities=15% Similarity=0.106 Sum_probs=156.2
Q ss_pred CCcEEEeCChHHHHHHHHHHh--ccCCCEEEEcCCCccchHHHHHhhc----------ccCCcEEEEeCCC---------
Q 009604 215 AESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL----------PKMGITATVIDPA--------- 273 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~al--l~pGD~VIv~~~~y~~t~~~~~~~l----------~~~Gi~v~~vd~~--------- 273 (531)
.+.+++++||++|+..+++.. ....++|+.....|++......... ..+...+..++..
T Consensus 125 ~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~ 204 (456)
T 4atq_A 125 AKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPE 204 (456)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTT
T ss_pred CcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCc
Confidence 456889999999999998643 2234678888888877432211110 0111223334321
Q ss_pred --CHH-------HHHHhccCCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCC----C--cccccc
Q 009604 274 --DME-------GLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----P--LNQKAL 334 (531)
Q Consensus 274 --d~e-------~Le~al~~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~----~--~~~~~l 334 (531)
+.+ .+++.+..+++.+|++|......|.+.+ +++|.++|++||++||+||++.. + +.....
T Consensus 205 ~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~ 284 (456)
T 4atq_A 205 ITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHE 284 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGT
T ss_pred ccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcccccccccc
Confidence 222 2333333335899999998887787764 89999999999999999999643 1 122333
Q ss_pred ccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 009604 335 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR--VQQQNSTALRMAK 412 (531)
Q Consensus 335 ~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~~~G~~~s~~~a~l~l~~L~tl~~r--~~~~~~na~~La~ 412 (531)
..-.|+++ +.|.++|. ...|++++++++.+.+..........-+|..+..++..|+.+... +++..+..+.+.+
T Consensus 285 gv~PDivt--~gK~lggg--~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~ 360 (456)
T 4atq_A 285 GVVPDIIT--MAKGIAGG--LPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALG 360 (456)
T ss_dssp TCCCSEEE--ECGGGGTT--SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCCchhh--hhhcccCc--CCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 34579987 56988754 346778888887766543222111223577777666666665321 2222233333333
Q ss_pred HHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcC------CHHHHHHHHHHcCCCCcccccCCcccccccCc
Q 009604 413 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------DLTATIKFIDALKIPYIAPSFGGCESIVDQPA 486 (531)
Q Consensus 413 ~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g------~~~~~~~fl~~L~~~~iavS~Gg~~Sli~~p~ 486 (531)
.|++... .||.. . +.+ -...+|.|.|+.|++.. ..+...++.+.+...++-+...
T Consensus 361 ~L~~l~~----~~~~~-~---~~~-v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~---------- 421 (456)
T 4atq_A 361 KLRELAA----ELSAG-G---GSV-VGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTC---------- 421 (456)
T ss_dssp HHHHHHH----HCC---------C-EEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEE----------
T ss_pred HHHHHHH----hcccc-c---CCc-eEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEec----------
Confidence 3332100 01100 0 000 01235678899999853 1234556666664434322111
Q ss_pred cccccCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHHh
Q 009604 487 IMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA 530 (531)
Q Consensus 487 ~~s~~~~~~~~~~~~gi~~~lIRlSvGl----E~~edli~dL~~AL~~ 530 (531)
|...+.|||..-+ |+.++.++.|+++|++
T Consensus 422 ---------------g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 422 ---------------GTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp ---------------CTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1124678887544 4556666777777764
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.18 E-value=2.1e-09 Score=115.43 Aligned_cols=219 Identities=14% Similarity=0.152 Sum_probs=132.6
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc-------cCC-CEEEEcCCCccchH-HHHHhh----cccCCc---EEEEeCCC----
Q 009604 214 GAESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRKTR-IFIETV----LPKMGI---TATVIDPA---- 273 (531)
Q Consensus 214 g~e~~i~~sSG~~Ai~~al~all-------~pG-D~VIv~~~~y~~t~-~~~~~~----l~~~Gi---~v~~vd~~---- 273 (531)
+.+.+++++||++|+..+++... +++ .+||.-...|++.. ..+... -+.++. ....++..
T Consensus 127 ~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~ 206 (473)
T 4e3q_A 127 DSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWR 206 (473)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHH
T ss_pred CccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccc
Confidence 34679999999999999987532 233 46787777777632 222100 001111 12222211
Q ss_pred ------C--------HHHHHHhcc---CCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCC----
Q 009604 274 ------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---- 328 (531)
Q Consensus 274 ------d--------~e~Le~al~---~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~---- 328 (531)
. .+++++.+. .+++.+|++|......|.+.+ +++|.++|++||++||.||++...
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG 286 (473)
T 4e3q_A 207 YGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG 286 (473)
T ss_dssp HSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc
Confidence 1 234455443 224789999998877787664 899999999999999999996432
Q ss_pred --ccccccccCCcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhh-----hcCCC--chHHHHHHHHHHHHHHHHH
Q 009604 329 --LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-----VLGGA--LNPNAAYLIIRGMKTLHLR 399 (531)
Q Consensus 329 --~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~-----~~G~~--~s~~~a~l~l~~L~tl~~r 399 (531)
+.......-.|+++ +.|.+++.. ...|++++++++.+.+..... ..|.+ -+|..+..++..|+.+...
T Consensus 287 ~~fa~e~~gv~PDi~t--~~K~l~gG~-~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~ 363 (473)
T 4e3q_A 287 NTWGCVTYDFTPDAII--SSKNLTAGF-FPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNE 363 (473)
T ss_dssp SSCHHHHTTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHS
T ss_pred chhHHHhcCCCCChHH--hcccccCCC-CCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccc
Confidence 11223334578887 679998653 346788889998887764321 12333 3477777766666665421
Q ss_pred --HHHHHHHHHHHHHHHHc---CCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEc
Q 009604 400 --VQQQNSTALRMAKILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD 453 (531)
Q Consensus 400 --~~~~~~na~~La~~L~~---~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~ 453 (531)
+++..+...+|.+.|++ +|.|.. .+|.|.|+.|++.
T Consensus 364 ~l~~~~~~~g~~l~~~L~~l~~~~~v~~------------------vRG~Gl~~gielv 404 (473)
T 4e3q_A 364 GLAENVRRLAPRFEERLKHIAERPNIGE------------------YRGIGFMWALEAV 404 (473)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTSTTEEE------------------EEEETTEEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCeeE------------------EeecceEEEEEEe
Confidence 23333444455555543 333332 2457889999984
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.11 E-value=6.8e-10 Score=126.99 Aligned_cols=205 Identities=14% Similarity=0.168 Sum_probs=120.7
Q ss_pred HHHHHhcc-------CCCcEEEEEeCC-CCCCCcccC----HHHHHHHHHhcCCEEEEeCCCCCC----cc--ccccccC
Q 009604 276 EGLEAALN-------NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----LN--QKALSLG 337 (531)
Q Consensus 276 e~Le~al~-------~~~tklV~lesP-~NPtG~v~d----l~~I~~la~~~gi~lIvD~a~a~~----~~--~~~l~~g 337 (531)
++|++.|+ ..++.+|++|.. .+..|.+.+ +++|.++|++||++||+||++... -. ......-
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~ 656 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK 656 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSC
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCC
Confidence 56777775 224889999987 788887764 899999999999999999986521 11 1222334
Q ss_pred CcEEEECCccccccCCCceEEEEEeChHHHHHHHHHhh----hcC--CCchHHHHHHHHHHHHHHHHH--HHHHHHH---
Q 009604 338 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----VLG--GALNPNAAYLIIRGMKTLHLR--VQQQNST--- 406 (531)
Q Consensus 338 aDivv~S~sK~lgg~g~v~gG~iv~~~~li~~l~~~~~----~~G--~~~s~~~a~l~l~~L~tl~~r--~~~~~~n--- 406 (531)
.|+++ ++|.+++ |-...|++++++++++.+..... .+| ...+|..+..++..|+.+... .++..++
T Consensus 657 PDiit--lsK~L~g-G~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~ 733 (831)
T 4a0g_A 657 PDIAC--FAKLLTG-GMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKT 733 (831)
T ss_dssp CSEEE--ECGGGGT-TSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSB
T ss_pred CcEEE--Eeccccc-CccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 68775 8899987 32346888899988877643211 123 234577777766666654310 0111010
Q ss_pred -----HHHHHHHHHcCCCceEEeCCCCCCCchhhhhhhhcCCcccEEEEEEcCC-------HHHHHHHHHHcCCCCcccc
Q 009604 407 -----ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------LTATIKFIDALKIPYIAPS 474 (531)
Q Consensus 407 -----a~~La~~L~~~p~v~~V~~pgl~s~p~~~l~~~~~~g~g~ivsf~l~g~-------~~~~~~fl~~L~~~~iavS 474 (531)
.+.+.+.|.++|.|..| +|.|.|+.|++..+ ...+.++.+.|...++.+.
T Consensus 734 l~~~l~~~l~~~l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~ 795 (831)
T 4a0g_A 734 LRELWDEELVQQISSHSAVQRV------------------VVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTR 795 (831)
T ss_dssp BCCCSCHHHHHHHHHSTTEEEE------------------EEETTEEEEEEC---------CHHHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHHHHHHhhCCCceeE------------------eecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEE
Confidence 11233445555554433 34678999998532 1234556666644343221
Q ss_pred cCCcccccccCccccccCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Q 009604 475 FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 529 (531)
Q Consensus 475 ~Gg~~Sli~~p~~~s~~~~~~~~~~~~gi~~~lIRlSvGlE~~edli~dL~~AL~ 529 (531)
| ..+.|||+.-+-.+++.|+.+.++|+
T Consensus 796 ----------p------------------~g~~lrl~pp~~~t~e~id~~~~~l~ 822 (831)
T 4a0g_A 796 ----------P------------------LGNVIYLMCGPCTSPEICRRLLTKLY 822 (831)
T ss_dssp ----------C------------------BTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ----------e------------------cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 13689999666555555555544443
No 237
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=55.99 E-value=59 Score=25.74 Aligned_cols=90 Identities=17% Similarity=0.274 Sum_probs=55.2
Q ss_pred cEEEeCChHHHHHHHHHHhccCC-CEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCC
Q 009604 217 STVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESP 295 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pG-D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP 295 (531)
.+++++.|.-+..++ ..+.+.| .+|++.+..- .-.+ .+...++.....|..+.+.+++.+.. ..+|+.+.|
T Consensus 7 ~v~I~G~G~iG~~~~-~~l~~~g~~~v~~~~r~~----~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~--~d~vi~~~~ 78 (118)
T 3ic5_A 7 NICVVGAGKIGQMIA-ALLKTSSNYSVTVADHDL----AALA-VLNRMGVATKQVDAKDEAGLAKALGG--FDAVISAAP 78 (118)
T ss_dssp EEEEECCSHHHHHHH-HHHHHCSSEEEEEEESCH----HHHH-HHHTTTCEEEECCTTCHHHHHHHTTT--CSEEEECSC
T ss_pred eEEEECCCHHHHHHH-HHHHhCCCceEEEEeCCH----HHHH-HHHhCCCcEEEecCCCHHHHHHHHcC--CCEEEECCC
Confidence 466777776444333 3455567 5565543221 1121 12245777777888889999998864 677777654
Q ss_pred CCCCCcccCHHHHHHHHHhcCCEEE
Q 009604 296 TNPFLRCVDVKLVSDLCHKKGAIVC 320 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~gi~lI 320 (531)
.. ....+.+.|.+.|+..+
T Consensus 79 ~~------~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 79 FF------LTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp GG------GHHHHHHHHHHTTCEEE
T ss_pred ch------hhHHHHHHHHHhCCCEE
Confidence 32 24678888888888754
No 238
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=48.62 E-value=57 Score=31.39 Aligned_cols=67 Identities=9% Similarity=0.034 Sum_probs=44.3
Q ss_pred CCcEEEEeCCC--CHHHHHHhc----cCCCcEEEEEe----CCCCCCCcccCHHHHHHHHHhcCCEEEEeCCCCCCc
Q 009604 263 MGITATVIDPA--DMEGLEAAL----NNNNVSLFFTE----SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL 329 (531)
Q Consensus 263 ~Gi~v~~vd~~--d~e~Le~al----~~~~tklV~le----sP~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a~~~ 329 (531)
.|.++..-... +++++..++ +..+..+++++ +..|..-...|+..+..+.+..+++||+|..++.+.
T Consensus 129 ~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~ 205 (262)
T 1zco_A 129 VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGR 205 (262)
T ss_dssp SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTCS
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCCc
Confidence 56665544433 566666555 22234677776 433555566788888888777799999999998664
No 239
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=46.05 E-value=22 Score=30.60 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=51.6
Q ss_pred CCcEEEeCChH--HHHHHHHHHhccCCCEEEEcCCCccch-HHHHHhhcccCCcEEEEe--C--C----CC---------
Q 009604 215 AESTVIMASGM--SASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPKMGITATVI--D--P----AD--------- 274 (531)
Q Consensus 215 ~e~~i~~sSG~--~Ai~~al~all~pGD~VIv~~~~y~~t-~~~~~~~l~~~Gi~v~~v--d--~----~d--------- 274 (531)
....++++.|+ +-+..++..+.+.|..|.+- ..... ..++...++.+..++.+. - . +|
T Consensus 18 ~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~--g~R~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~d~~~g~~G~v 95 (142)
T 3lyu_A 18 FGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTL--HVTFEPMVILKEELEKAVTRHIVEPVPLNPNQDFLANMKNVSQRL 95 (142)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEE--EEEEGGGCCSHHHHHTTSSEEEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEE--EeCCHHHhhHHHHHHHHHhheEEEEeecccccCCCCCCCCCccch
Confidence 35677777665 66777777787777665432 11110 001112223333333322 1 0 11
Q ss_pred HHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEE
Q 009604 275 MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 321 (531)
Q Consensus 275 ~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIv 321 (531)
.+.|++.+...+...||+|.|.-. ++.+.+.++++|++.+.
T Consensus 96 ~~~l~~~~~~~~~~~vy~CGP~~M------m~av~~~l~~~~~~~~~ 136 (142)
T 3lyu_A 96 KEKVRELLESEDWDLVFMVGPVGD------QKQVFEVVKEYGVPMLE 136 (142)
T ss_dssp HHHHHHHHHSSCCSEEEEESCHHH------HHHHHHHHHHHTCCBC-
T ss_pred hHHHHHhcccCCCCEEEEECCHHH------HHHHHHHHHHcCCchhh
Confidence 123444443323457898888621 67888999999987653
No 240
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=45.20 E-value=78 Score=26.37 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=49.9
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCC
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESP 295 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP 295 (531)
..+++++.|.-+..++ ..|.+.|-.|++-+..- ..++ .+...|+.+...|..+.+.++++--+ +..+|++..+
T Consensus 7 ~~v~I~G~G~iG~~la-~~L~~~g~~V~~id~~~----~~~~-~~~~~~~~~~~gd~~~~~~l~~~~~~-~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLV-RELTAAGKKVLAVDKSK----EKIE-LLEDEGFDAVIADPTDESFYRSLDLE-GVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHHHHHHH-HHHHHTTCCEEEEESCH----HHHH-HHHHTTCEEEECCTTCHHHHHHSCCT-TCSEEEECCS
T ss_pred CEEEEECCCHHHHHHH-HHHHHCCCeEEEEECCH----HHHH-HHHHCCCcEEECCCCCHHHHHhCCcc-cCCEEEEecC
Confidence 4588888887444333 34455676555543321 1122 22334777777788888888876333 3678887665
Q ss_pred CCCCCcccCHHHHHHHHHhcC
Q 009604 296 TNPFLRCVDVKLVSDLCHKKG 316 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~g 316 (531)
+ . ..-..+...+++.+
T Consensus 80 ~-~----~~n~~~~~~a~~~~ 95 (141)
T 3llv_A 80 D-D----EFNLKILKALRSVS 95 (141)
T ss_dssp C-H----HHHHHHHHHHHHHC
T ss_pred C-H----HHHHHHHHHHHHhC
Confidence 3 1 11124455566654
No 241
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=44.43 E-value=25 Score=32.75 Aligned_cols=36 Identities=8% Similarity=-0.077 Sum_probs=31.8
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEE
Q 009604 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 321 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIv 321 (531)
++..|++|-..|+.|.+..++++.++|++||++++.
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 367888888878999999999999999999998763
No 242
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=43.68 E-value=28 Score=30.87 Aligned_cols=67 Identities=10% Similarity=-0.006 Sum_probs=44.8
Q ss_pred CccchHHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcC
Q 009604 248 CYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG 316 (531)
Q Consensus 248 ~y~~t~~~~~~~l~~~Gi~v~~vd~-~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~g 316 (531)
.|.--..++...++..|.++.+... ..++++.+++.+.+..+|.++.-. +.....++++.+.+++.|
T Consensus 30 ~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~--~~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 30 GHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILN--GAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp SCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESS--SCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeec--hhhHHHHHHHHHHHHhcC
Confidence 4443345566678888999987764 367888777765557888885544 234456777777777653
No 243
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=41.44 E-value=91 Score=29.59 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=38.5
Q ss_pred ccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCC-CCCCcccCHHHHHHHHHhcC-CEEEE
Q 009604 261 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT-NPFLRCVDVKLVSDLCHKKG-AIVCI 321 (531)
Q Consensus 261 ~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~-NPtG~v~dl~~I~~la~~~g-i~lIv 321 (531)
...++++...|..|.+.+.++++. ...|+..... ++...+.....+.+.|++.| +.-++
T Consensus 53 ~~~~~~~~~~D~~d~~~l~~~~~~--~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v 113 (313)
T 1qyd_A 53 KQLGAKLIEASLDDHQRLVDALKQ--VDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 113 (313)
T ss_dssp HTTTCEEECCCSSCHHHHHHHHTT--CSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred HhCCeEEEeCCCCCHHHHHHHHhC--CCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence 345788877888899999999974 5555543332 11113444678889998887 64333
No 244
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=40.84 E-value=1.5e+02 Score=25.06 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=52.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcc-cCCcEEEEeCCCCHHHHHHh-ccCCCcEEEEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KMGITATVIDPADMEGLEAA-LNNNNVSLFFT 292 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~-~~Gi~v~~vd~~d~e~Le~a-l~~~~tklV~l 292 (531)
...+++++.|.-+..++. .+.+.|-.|++.+..-.. + ..+. ..|+.+...+..+.+.++++ +.. ..+|++
T Consensus 19 ~~~v~IiG~G~iG~~la~-~L~~~g~~V~vid~~~~~----~-~~~~~~~g~~~~~~d~~~~~~l~~~~~~~--ad~Vi~ 90 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIAN-LASSSGHSVVVVDKNEYA----F-HRLNSEFSGFTVVGDAAEFETLKECGMEK--ADMVFA 90 (155)
T ss_dssp CCEEEEECCSHHHHHHHH-HHHHTTCEEEEEESCGGG----G-GGSCTTCCSEEEESCTTSHHHHHTTTGGG--CSEEEE
T ss_pred CCcEEEECCCHHHHHHHH-HHHhCCCeEEEEECCHHH----H-HHHHhcCCCcEEEecCCCHHHHHHcCccc--CCEEEE
Confidence 356888998885554433 344556666554332111 1 2334 55776655566677777765 432 578887
Q ss_pred eCCCCCCCcccCHHHHHHHHHh-cC-CEEEEe
Q 009604 293 ESPTNPFLRCVDVKLVSDLCHK-KG-AIVCID 322 (531)
Q Consensus 293 esP~NPtG~v~dl~~I~~la~~-~g-i~lIvD 322 (531)
+.++. .....+.+++++ .+ ..++..
T Consensus 91 ~~~~~-----~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 91 FTNDD-----STNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp CSSCH-----HHHHHHHHHHHHTSCCSEEEEE
T ss_pred EeCCc-----HHHHHHHHHHHHHCCCCeEEEE
Confidence 66641 123455666766 44 344443
No 245
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=40.75 E-value=1.7e+02 Score=28.18 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=69.9
Q ss_pred EeCChHHHHHHHHHHhccCCCEEEEcC---CCccchHHHHHhh--------cccC-CcEEEEeCCC-CHHHHHHhccCCC
Q 009604 220 IMASGMSASTVMLLALVPAGGHIVTTT---DCYRKTRIFIETV--------LPKM-GITATVIDPA-DMEGLEAALNNNN 286 (531)
Q Consensus 220 ~~sSG~~Ai~~al~all~pGD~VIv~~---~~y~~t~~~~~~~--------l~~~-Gi~v~~vd~~-d~e~Le~al~~~~ 286 (531)
+.+.-+..+...+........+|++.. ..|.--..++..+ ++.. |.++.++-.. .++++.+++.+.+
T Consensus 101 ~s~~~~~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~ 180 (262)
T 1xrs_B 101 SEILSMEETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE 180 (262)
T ss_dssp -CCCCHHHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC
Confidence 334445555555555544334555432 3454334455555 7888 9999876543 6777777766546
Q ss_pred cEEEEEeCCCCCCC--cccCHHHHHHHHHhcC----CEEEEeCCCCCCccccccccCCcEEEECC
Q 009604 287 VSLFFTESPTNPFL--RCVDVKLVSDLCHKKG----AIVCIDGTFATPLNQKALSLGADLVLHSA 345 (531)
Q Consensus 287 tklV~lesP~NPtG--~v~dl~~I~~la~~~g----i~lIvD~a~a~~~~~~~l~~gaDivv~S~ 345 (531)
..+|.+..-..+ + .+..+.++.+.+++.| +++++=.+..+. .-....|+|.+....
T Consensus 181 ~d~VglS~l~t~-~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~--~~a~~iGad~~~~da 242 (262)
T 1xrs_B 181 ADVLLVSQTVTQ-KNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINN--EIAKELGYDAGFGPG 242 (262)
T ss_dssp CSEEEEECCCCT-TSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCH--HHHHTTTCSEEECTT
T ss_pred CCEEEEEeecCC-ccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCH--HHHHHcCCeEEECCc
Confidence 888888554422 1 3445777888777765 778775553211 112345677665443
No 246
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=40.40 E-value=72 Score=28.10 Aligned_cols=76 Identities=21% Similarity=0.135 Sum_probs=41.7
Q ss_pred cccCCcEEEEeCCCC--HHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEE--EeCCCCCCccccccc
Q 009604 260 LPKMGITATVIDPAD--MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC--IDGTFATPLNQKALS 335 (531)
Q Consensus 260 l~~~Gi~v~~vd~~d--~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lI--vD~a~a~~~~~~~l~ 335 (531)
+.+.|..+..++.+. .......++++ .-+|++ +..|...++-++++.++++|+.+| .|.. ..++.
T Consensus 61 l~~~g~~~~~~~~~~~~~~~~~~~~~~~-d~~i~i----S~sG~t~~~~~~~~~ak~~g~~vi~IT~~~------~s~l~ 129 (187)
T 3sho_A 61 LNSLGIRTTVLTEGGSTLTITLANLRPT-DLMIGV----SVWRYLRDTVAALAGAAERGVPTMALTDSS------VSPPA 129 (187)
T ss_dssp HHHTTCCEEEECCCTHHHHHHHHTCCTT-EEEEEE----CCSSCCHHHHHHHHHHHHTTCCEEEEESCT------TSHHH
T ss_pred HHhcCCCEEEecCCchhHHHHHhcCCCC-CEEEEE----eCCCCCHHHHHHHHHHHHCCCCEEEEeCCC------CCcch
Confidence 344566666555222 11222344443 334444 345788888889999999987554 3332 23343
Q ss_pred cCCcEEEECCc
Q 009604 336 LGADLVLHSAT 346 (531)
Q Consensus 336 ~gaDivv~S~s 346 (531)
..+|+++...+
T Consensus 130 ~~ad~~l~~~~ 140 (187)
T 3sho_A 130 RIADHVLVAAT 140 (187)
T ss_dssp HHCSEEEECCC
T ss_pred hhCcEEEEecC
Confidence 34777775433
No 247
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=40.22 E-value=76 Score=27.39 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=59.2
Q ss_pred EEEeCCh--HHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCH-------HHHHHhccCCCcE
Q 009604 218 TVIMASG--MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM-------EGLEAALNNNNVS 288 (531)
Q Consensus 218 ~i~~sSG--~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~-------e~Le~al~~~~tk 288 (531)
+++.-+. -..+.-....+..-|=+|+.+ ++|..++ +..|+++..+..... ..+.+.|++++..
T Consensus 27 vliSv~d~dK~~l~~~a~~l~~lGf~i~AT----~GTa~~L----~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~ 98 (143)
T 2yvq_A 27 ILIGIQQSFRPRFLGVAEQLHNEGFKLFAT----EATSDWL----NANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSID 98 (143)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTCEEEEE----HHHHHHH----HHTTCCCEEECCGGGC-----CBCHHHHHHTTSCC
T ss_pred EEEEecccchHHHHHHHHHHHHCCCEEEEC----chHHHHH----HHcCCeEEEEEeccCCCcccccccHHHHHHCCCce
Confidence 4444455 244444555676778888876 4665444 456888877753211 2477778776677
Q ss_pred EEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEE
Q 009604 289 LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 321 (531)
Q Consensus 289 lV~lesP~NPtG~v~dl~~I~~la~~~gi~lIv 321 (531)
+|+. +|..-.....|-..|.+.|-+++++++.
T Consensus 99 lVIn-t~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 99 LVIN-LPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp EEEE-CCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred EEEE-CCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 7764 4432112234677899999999999874
No 248
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=39.73 E-value=65 Score=31.45 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=56.5
Q ss_pred EEEeCC-hHHHHHHHHHHhccCCCEEEE-cCCC--ccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEe
Q 009604 218 TVIMAS-GMSASTVMLLALVPAGGHIVT-TTDC--YRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTE 293 (531)
Q Consensus 218 ~i~~sS-G~~Ai~~al~all~pGD~VIv-~~~~--y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~le 293 (531)
+++++. |.-+-. ++..|++.|.+|.+ .+.. .......+ ..+...++++...|..|.+.+.+++++.+...|+..
T Consensus 13 IlVtGatG~iG~~-l~~~L~~~g~~V~~l~R~~~~~~~~~~~~-~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~ 90 (346)
T 3i6i_A 13 VLIAGATGFIGQF-VATASLDAHRPTYILARPGPRSPSKAKIF-KALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVST 90 (346)
T ss_dssp EEEECTTSHHHHH-HHHHHHHTTCCEEEEECSSCCCHHHHHHH-HHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred EEEECCCcHHHHH-HHHHHHHCCCCEEEEECCCCCChhHHHHH-HHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEEC
Confidence 555553 543322 23345556655443 3322 11111112 123345888888899999999999973225556543
Q ss_pred CCCCCCCcccCHHHHHHHHHhcC-CEEEEeCCCC
Q 009604 294 SPTNPFLRCVDVKLVSDLCHKKG-AIVCIDGTFA 326 (531)
Q Consensus 294 sP~NPtG~v~dl~~I~~la~~~g-i~lIvD~a~a 326 (531)
... ..+.....|.+.|++.| +..++=..|+
T Consensus 91 a~~---~n~~~~~~l~~aa~~~g~v~~~v~S~~g 121 (346)
T 3i6i_A 91 VGG---ESILDQIALVKAMKAVGTIKRFLPSEFG 121 (346)
T ss_dssp CCG---GGGGGHHHHHHHHHHHCCCSEEECSCCS
T ss_pred Cch---hhHHHHHHHHHHHHHcCCceEEeecccC
Confidence 322 12334568889999888 6555423443
No 249
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=38.42 E-value=16 Score=37.76 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=27.7
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
+.+..|+..|++++++.||++|+.||+|-++
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 99 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNVGVRIYVDAVI 99 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4556888899999999999999999999984
No 250
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=37.67 E-value=94 Score=30.71 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=56.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCC-EEEEcCCC---ccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGG-HIVTTTDC---YRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLF 290 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD-~VIv~~~~---y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV 290 (531)
...+++++.|-.+ ..++.+|.+.|- +|.+..-. ......+.+.+-...+.++..++..+.+++.+.+.+ ..+|
T Consensus 154 gk~~lVlGaGG~g-~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~--aDiI 230 (315)
T 3tnl_A 154 GKKMTICGAGGAA-TAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAE--SVIF 230 (315)
T ss_dssp TSEEEEECCSHHH-HHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHT--CSEE
T ss_pred CCEEEEECCChHH-HHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcC--CCEE
Confidence 4568888877432 233344555664 56554333 333333333333345666666777777888887764 5688
Q ss_pred EEeCCCCCCCc----cc-CHHHHHHHHHhcCCEEEEeCCCC
Q 009604 291 FTESPTNPFLR----CV-DVKLVSDLCHKKGAIVCIDGTFA 326 (531)
Q Consensus 291 ~lesP~NPtG~----v~-dl~~I~~la~~~gi~lIvD~a~a 326 (531)
+-++|....+. .. +.+.+ ..-.+++|-+|.
T Consensus 231 INaTp~Gm~~~~~~~p~~~~~~l------~~~~~V~DlvY~ 265 (315)
T 3tnl_A 231 TNATGVGMKPFEGETLLPSADML------RPELIVSDVVYK 265 (315)
T ss_dssp EECSSTTSTTSTTCCSCCCGGGC------CTTCEEEESCCS
T ss_pred EECccCCCCCCCCCCCCCcHHHc------CCCCEEEEeccC
Confidence 87777543322 12 22222 123577898885
No 251
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=37.66 E-value=96 Score=29.63 Aligned_cols=83 Identities=12% Similarity=0.014 Sum_probs=42.4
Q ss_pred CEEEEcCCCccchHHHHHhhcccCCcEEE-EeCC-CCHHHHHHhccCCCcEEEEEeCCCCCCCcccC-----HHHHHHHH
Q 009604 240 GHIVTTTDCYRKTRIFIETVLPKMGITAT-VIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD-----VKLVSDLC 312 (531)
Q Consensus 240 D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~-~vd~-~d~e~Le~al~~~~tklV~lesP~NPtG~v~d-----l~~I~~la 312 (531)
|-|++++..+.....+. ..++..|++.. .+.+ .+.+.++...... ...|++.+....||...+ .+.|.++.
T Consensus 124 dgii~~d~~~e~~~~~~-~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~-~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr 201 (268)
T 1qop_A 124 DSVLVADVPVEESAPFR-QAALRHNIAPIFICPPNADDDLLRQVASYG-RGYTYLLSRSGVTGAENRGALPLHHLIEKLK 201 (268)
T ss_dssp CEEEETTCCGGGCHHHH-HHHHHTTCEEECEECTTCCHHHHHHHHHHC-CSCEEEESSSSCCCSSSCC--CCHHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHH-HHHHHcCCcEEEEECCCCCHHHHHHHHhhC-CCcEEEEecCCcCCCccCCCchHHHHHHHHH
Confidence 55777665543333333 44566676533 2333 3445555544332 235566565556666332 44555554
Q ss_pred HhcCCEEEEeCC
Q 009604 313 HKKGAIVCIDGT 324 (531)
Q Consensus 313 ~~~gi~lIvD~a 324 (531)
+..++++++|.=
T Consensus 202 ~~~~~pi~vggG 213 (268)
T 1qop_A 202 EYHAAPALQGFG 213 (268)
T ss_dssp HTTCCCEEEESS
T ss_pred hccCCcEEEECC
Confidence 444677777543
No 252
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=37.13 E-value=65 Score=28.29 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=50.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhccC-CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHh--ccCCCcEEEE
Q 009604 215 AESTVIMASGMSASTVMLLALVPA-GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA--LNNNNVSLFF 291 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~p-GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~a--l~~~~tklV~ 291 (531)
...+++++.|.-+..++- .|.+. |-.|++-+..- .-.+ .+...|+.+...|..+.+.++++ +.. .++|+
T Consensus 39 ~~~v~IiG~G~~G~~~a~-~L~~~~g~~V~vid~~~----~~~~-~~~~~g~~~~~gd~~~~~~l~~~~~~~~--ad~vi 110 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYD-ELRARYGKISLGIEIRE----EAAQ-QHRSEGRNVISGDATDPDFWERILDTGH--VKLVL 110 (183)
T ss_dssp TCSEEEECCSHHHHHHHH-HHHHHHCSCEEEEESCH----HHHH-HHHHTTCCEEECCTTCHHHHHTBCSCCC--CCEEE
T ss_pred CCcEEEECCCHHHHHHHH-HHHhccCCeEEEEECCH----HHHH-HHHHCCCCEEEcCCCCHHHHHhccCCCC--CCEEE
Confidence 457889998875555443 34444 54454433221 1121 23345777766677788888776 543 67888
Q ss_pred EeCCCCCCCcccCHHHHHHHHHhcC
Q 009604 292 TESPTNPFLRCVDVKLVSDLCHKKG 316 (531)
Q Consensus 292 lesP~NPtG~v~dl~~I~~la~~~g 316 (531)
+..|+. .....+...+++.+
T Consensus 111 ~~~~~~-----~~~~~~~~~~~~~~ 130 (183)
T 3c85_A 111 LAMPHH-----QGNQTALEQLQRRN 130 (183)
T ss_dssp ECCSSH-----HHHHHHHHHHHHTT
T ss_pred EeCCCh-----HHHHHHHHHHHHHC
Confidence 766641 12334555666644
No 253
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=36.22 E-value=1.6e+02 Score=23.84 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=47.9
Q ss_pred cEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCC
Q 009604 217 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT 296 (531)
Q Consensus 217 ~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~ 296 (531)
.+++++.|.-+..++ ..|.+.|..|++-+..- ...+......++.+...+..+.+.+.+..-+ +..+|+++.|.
T Consensus 6 ~i~IiG~G~iG~~~a-~~L~~~g~~v~~~d~~~----~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~-~~d~vi~~~~~ 79 (140)
T 1lss_A 6 YIIIAGIGRVGYTLA-KSLSEKGHDIVLIDIDK----DICKKASAEIDALVINGDCTKIKTLEDAGIE-DADMYIAVTGK 79 (140)
T ss_dssp EEEEECCSHHHHHHH-HHHHHTTCEEEEEESCH----HHHHHHHHHCSSEEEESCTTSHHHHHHTTTT-TCSEEEECCSC
T ss_pred EEEEECCCHHHHHHH-HHHHhCCCeEEEEECCH----HHHHHHHHhcCcEEEEcCCCCHHHHHHcCcc-cCCEEEEeeCC
Confidence 467788887555443 34555676665543221 1122222234676655566677777655223 36788887665
Q ss_pred CCCCcccCHHHHHHHHHhcC
Q 009604 297 NPFLRCVDVKLVSDLCHKKG 316 (531)
Q Consensus 297 NPtG~v~dl~~I~~la~~~g 316 (531)
. ..-..+.+++++.+
T Consensus 80 ~-----~~~~~~~~~~~~~~ 94 (140)
T 1lss_A 80 E-----EVNLMSSLLAKSYG 94 (140)
T ss_dssp H-----HHHHHHHHHHHHTT
T ss_pred c-----hHHHHHHHHHHHcC
Confidence 2 11124556666654
No 254
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=34.41 E-value=89 Score=30.15 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=23.5
Q ss_pred CEEEEcCCCccchHHHHHhhcccCCcEEEE-eCC-CCHHHHHHhccCCCcEEEEEeCCCCCCCc
Q 009604 240 GHIVTTTDCYRKTRIFIETVLPKMGITATV-IDP-ADMEGLEAALNNNNVSLFFTESPTNPFLR 301 (531)
Q Consensus 240 D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~-vd~-~d~e~Le~al~~~~tklV~lesP~NPtG~ 301 (531)
|-|++++..+.-...+. ..++..|++..+ +.+ .+.+.++...+.. ...||+.+..-.||.
T Consensus 125 dgvii~Dlp~ee~~~~~-~~~~~~gl~~i~liaP~t~~eri~~i~~~~-~gfvY~vS~~GvTG~ 186 (267)
T 3vnd_A 125 DSVLIADVPVEESAPFS-KAAKAHGIAPIFIAPPNADADTLKMVSEQG-EGYTYLLSRAGVTGT 186 (267)
T ss_dssp CEEEETTSCGGGCHHHH-HHHHHTTCEEECEECTTCCHHHHHHHHHHC-CSCEEESCCCCCC--
T ss_pred CEEEeCCCCHhhHHHHH-HHHHHcCCeEEEEECCCCCHHHHHHHHHhC-CCcEEEEecCCCCCC
Confidence 45555544433322222 344555555432 222 2344444443321 234555444334454
No 255
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=34.38 E-value=72 Score=29.12 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=50.1
Q ss_pred CccchHHHHHhhcccCCcEEEEeCCC-CHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcC----CEEEEe
Q 009604 248 CYRKTRIFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG----AIVCID 322 (531)
Q Consensus 248 ~y~~t~~~~~~~l~~~Gi~v~~vd~~-d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~g----i~lIvD 322 (531)
.|.--..++...++..|.++.++..+ .++++.+++.+.++.+|.+..-. +.....+.++.+.+++.+ +++++=
T Consensus 100 ~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 100 LHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALL--TTTMMNMKSTIDALIAAGLRDRVKVIVG 177 (210)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCS--GGGTHHHHHHHHHHHHTTCGGGCEEEEE
T ss_pred ccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 44434455666788889999887754 57888777764457888885533 234556778887777754 777774
Q ss_pred CC
Q 009604 323 GT 324 (531)
Q Consensus 323 ~a 324 (531)
..
T Consensus 178 G~ 179 (210)
T 1y80_A 178 GA 179 (210)
T ss_dssp ST
T ss_pred CC
Confidence 44
No 256
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=34.10 E-value=76 Score=30.41 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=53.2
Q ss_pred EEEeC-ChHHHHHHHHHHhccCCCEEEE-cCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCC
Q 009604 218 TVIMA-SGMSASTVMLLALVPAGGHIVT-TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESP 295 (531)
Q Consensus 218 ~i~~s-SG~~Ai~~al~all~pGD~VIv-~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP 295 (531)
+++++ +|.-+-. ++..|++.|.+|++ ....- .....+.. +...|+++...|..|.+.+.++++. ...|+....
T Consensus 14 ilVtGatG~iG~~-l~~~L~~~g~~V~~l~R~~~-~~~~~~~~-l~~~~v~~v~~Dl~d~~~l~~a~~~--~d~vi~~a~ 88 (318)
T 2r6j_A 14 ILIFGGTGYIGNH-MVKGSLKLGHPTYVFTRPNS-SKTTLLDE-FQSLGAIIVKGELDEHEKLVELMKK--VDVVISALA 88 (318)
T ss_dssp EEEETTTSTTHHH-HHHHHHHTTCCEEEEECTTC-SCHHHHHH-HHHTTCEEEECCTTCHHHHHHHHTT--CSEEEECCC
T ss_pred EEEECCCchHHHH-HHHHHHHCCCcEEEEECCCC-chhhHHHH-hhcCCCEEEEecCCCHHHHHHHHcC--CCEEEECCc
Confidence 55555 3442222 22345556755543 33321 11122211 2335788888899999999999974 556664332
Q ss_pred CCCCCcccCHHHHHHHHHhcC-CEEEE
Q 009604 296 TNPFLRCVDVKLVSDLCHKKG-AIVCI 321 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~g-i~lIv 321 (531)
. . .+.....+.+.|++.| +.-++
T Consensus 89 ~--~-~~~~~~~l~~aa~~~g~v~~~v 112 (318)
T 2r6j_A 89 F--P-QILDQFKILEAIKVAGNIKRFL 112 (318)
T ss_dssp G--G-GSTTHHHHHHHHHHHCCCCEEE
T ss_pred h--h-hhHHHHHHHHHHHhcCCCCEEE
Confidence 1 1 1334678888888877 64444
No 257
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=33.89 E-value=51 Score=28.92 Aligned_cols=55 Identities=13% Similarity=0.031 Sum_probs=40.0
Q ss_pred CHHHHHHhccCCCcEEEEEeCCCCCCCcccCH----HHHH-HHHHhcCCE-EEEeCCCCCC
Q 009604 274 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDV----KLVS-DLCHKKGAI-VCIDGTFATP 328 (531)
Q Consensus 274 d~e~Le~al~~~~tklV~lesP~NPtG~v~dl----~~I~-~la~~~gi~-lIvD~a~a~~ 328 (531)
+.+.|.+.+++.++..|+++-|-|..|+.... +.++ .++++.+++ ..+||.+.+-
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts~ 103 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTTM 103 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCCHH
Confidence 57889999988779999999998888876542 3344 344456765 5579988654
No 258
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=31.37 E-value=69 Score=31.06 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=41.2
Q ss_pred CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCC---------CHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHH
Q 009604 238 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLV 308 (531)
Q Consensus 238 pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---------d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I 308 (531)
++..+++.-+.|+ -+++.+|++...+... ++.+|.+.++++++++||.|.-.++ +.+
T Consensus 178 ~~~~~v~~H~af~-------Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~ 243 (286)
T 3gi1_A 178 RSKTFVTQHTAFS-------YLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNP-------KIA 243 (286)
T ss_dssp SCCEEEEEESCCH-------HHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCT-------HHH
T ss_pred CCCEEEEECCchH-------HHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHH
Confidence 4677776544442 1345567765543211 3455666666656899998655543 233
Q ss_pred HHHHHhcCCEEEE
Q 009604 309 SDLCHKKGAIVCI 321 (531)
Q Consensus 309 ~~la~~~gi~lIv 321 (531)
..++++.|+.+++
T Consensus 244 ~~la~~~g~~v~~ 256 (286)
T 3gi1_A 244 HAIAKSTGAKVKT 256 (286)
T ss_dssp HHHHHTTTCEEEE
T ss_pred HHHHHHhCCeEEE
Confidence 4567888888764
No 259
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=30.69 E-value=1.3e+02 Score=27.93 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=32.0
Q ss_pred CCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCC
Q 009604 263 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA 317 (531)
Q Consensus 263 ~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi 317 (531)
.++++...|..|.+.++++++. ...|+.....++...+.-...+.+.|++.|+
T Consensus 44 ~~~~~~~~D~~d~~~~~~~~~~--~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~ 96 (286)
T 2zcu_A 44 QGITVRQADYGDEAALTSALQG--VEKLLLISSSEVGQRAPQHRNVINAAKAAGV 96 (286)
T ss_dssp TTCEEEECCTTCHHHHHHHTTT--CSEEEECC--------CHHHHHHHHHHHHTC
T ss_pred CCCeEEEcCCCCHHHHHHHHhC--CCEEEEeCCCCchHHHHHHHHHHHHHHHcCC
Confidence 3677777888899999999864 4556543332221222335677888887775
No 260
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=30.61 E-value=23 Score=36.71 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=27.3
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
+....|...|++++++.||++|+.||+|-++
T Consensus 57 idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 87 (448)
T 1g94_A 57 LQSRGGNRAQFIDMVNRCSAAGVDIYVDTLI 87 (448)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEee
Confidence 4445788889999999999999999999985
No 261
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=30.22 E-value=57 Score=30.83 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=35.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcc-cCCcEEEEeCCCCHHHHHHhccCCCcEEEEEe
Q 009604 215 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KMGITATVIDPADMEGLEAALNNNNVSLFFTE 293 (531)
Q Consensus 215 ~e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~-~~Gi~v~~vd~~d~e~Le~al~~~~tklV~le 293 (531)
++.++-++.|+......+.-.+.|..+|+.-+..-..... +...++ .-++.....+..+++...... . ...+||..
T Consensus 78 G~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~-l~~~a~~~~ni~~V~~d~~~p~~~~~~~-~-~vDvVf~d 154 (233)
T 4df3_A 78 GDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRD-LLTVVRDRRNIFPILGDARFPEKYRHLV-E-GVDGLYAD 154 (233)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHH-HHHHSTTCTTEEEEESCTTCGGGGTTTC-C-CEEEEEEC
T ss_pred CCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHH-HHHhhHhhcCeeEEEEeccCcccccccc-c-eEEEEEEe
Confidence 4556666666644444444455566666655443322222 222332 234555444544544332222 2 25566654
Q ss_pred C
Q 009604 294 S 294 (531)
Q Consensus 294 s 294 (531)
.
T Consensus 155 ~ 155 (233)
T 4df3_A 155 V 155 (233)
T ss_dssp C
T ss_pred c
Confidence 3
No 262
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=30.10 E-value=83 Score=28.55 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=53.9
Q ss_pred HHHHHHHHHhccC--CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCC---HHHHHHhccCCCcEEEEEeCCC--CC
Q 009604 226 SASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD---MEGLEAALNNNNVSLFFTESPT--NP 298 (531)
Q Consensus 226 ~Ai~~al~all~p--GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d---~e~Le~al~~~~tklV~lesP~--NP 298 (531)
..+......+..- |=+|+.+ ++|-.+++. ..|+++..+.... -.++.+.|.++++.+|+. +|. ++
T Consensus 40 ~~lv~~ak~~~~lL~Gf~L~AT----~gTa~~L~e---~~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVIn-t~dPl~~ 111 (178)
T 1vmd_A 40 RDLLEWVSFNLGTLSKHELYAT----GTTGALLQE---KLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIF-FWDPLEP 111 (178)
T ss_dssp HHHHHHHHHSHHHHTTSEEEEC----HHHHHHHHH---HHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEE-ECCSSSC
T ss_pred HHHHHHHHHHHHHhcCCEEEEc----hHHHHHHHH---HhCceeEEEeecCCCCCchHHHHHHCCCccEEEE-ccCccCC
Confidence 3343444444433 6677765 456544433 1477776664321 136788888766777664 333 43
Q ss_pred CCcccCHHHHHHHHHhcCCEEEE
Q 009604 299 FLRCVDVKLVSDLCHKKGAIVCI 321 (531)
Q Consensus 299 tG~v~dl~~I~~la~~~gi~lIv 321 (531)
.....|...|.+.|-.++++++.
T Consensus 112 ~~h~~D~~~IRR~A~~~~IP~~T 134 (178)
T 1vmd_A 112 QAHDVDVKALIRIATVYNIPVAI 134 (178)
T ss_dssp CTTSCCHHHHHHHHHHTTCCEES
T ss_pred CcccccHHHHHHHHHHcCCCEEe
Confidence 22256899999999999999874
No 263
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=29.90 E-value=57 Score=33.35 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=48.8
Q ss_pred cccCCcEEEEeCC--CCHHHHHHhc----cCCCcEEEEEeC-CC-CCC--CcccCHHHHHHHHHhcCCEEEEeCCCCCC-
Q 009604 260 LPKMGITATVIDP--ADMEGLEAAL----NNNNVSLFFTES-PT-NPF--LRCVDVKLVSDLCHKKGAIVCIDGTFATP- 328 (531)
Q Consensus 260 l~~~Gi~v~~vd~--~d~e~Le~al----~~~~tklV~les-P~-NPt--G~v~dl~~I~~la~~~gi~lIvD~a~a~~- 328 (531)
+...|.+|..-.. .++++++.++ ...+..+++++. .+ -|+ -...|+..|..+.+..+++|++|-+++.+
T Consensus 245 ~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV~~D~th~~G~ 324 (385)
T 3nvt_A 245 AGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTHSTGR 324 (385)
T ss_dssp HHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEEHHHHHCC
T ss_pred HHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCEEEcCCCCCCc
Confidence 3445665554332 3556555443 233356777764 33 233 24568888888877789999999998753
Q ss_pred ------ccccccccCCc
Q 009604 329 ------LNQKALSLGAD 339 (531)
Q Consensus 329 ------~~~~~l~~gaD 339 (531)
+......+|+|
T Consensus 325 r~~v~~~a~AAvA~GA~ 341 (385)
T 3nvt_A 325 KDLLLPCAKAALAIEAD 341 (385)
T ss_dssp GGGHHHHHHHHHHTTCS
T ss_pred cchHHHHHHHHHHhCCC
Confidence 22334567888
No 264
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=29.65 E-value=82 Score=31.22 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=39.6
Q ss_pred hccCCCEEEEcCCCccc------hHHHHHhhcccCCcEEEEeCCC-------------CHHHHHHhccCCCcEEEEEeCC
Q 009604 235 LVPAGGHIVTTTDCYRK------TRIFIETVLPKMGITATVIDPA-------------DMEGLEAALNNNNVSLFFTESP 295 (531)
Q Consensus 235 ll~pGD~VIv~~~~y~~------t~~~~~~~l~~~Gi~v~~vd~~-------------d~e~Le~al~~~~tklV~lesP 295 (531)
.+++||+|-+..|..+. .+......++.+|.++.+-+.. -.++|.+++.+..+++|+...-
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 47899999887776432 1222234567789998865421 1467777776656899987443
Q ss_pred C
Q 009604 296 T 296 (531)
Q Consensus 296 ~ 296 (531)
.
T Consensus 88 G 88 (327)
T 4h1h_A 88 G 88 (327)
T ss_dssp C
T ss_pred c
Confidence 3
No 265
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=29.62 E-value=72 Score=28.18 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=54.1
Q ss_pred HHHHHHHHHhccC--CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCC---HHHHHHhccCCCcEEEEEeCCC--CC
Q 009604 226 SASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD---MEGLEAALNNNNVSLFFTESPT--NP 298 (531)
Q Consensus 226 ~Ai~~al~all~p--GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d---~e~Le~al~~~~tklV~lesP~--NP 298 (531)
..+......+..- |=+|+.+ ++|-.++++ ..|+++..+.... -.++.+.|.+++..+|+. .|. ++
T Consensus 24 ~~~v~~ak~~~~ll~Gf~l~AT----~gTa~~L~e---~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVIn-t~~pl~~ 95 (152)
T 1b93_A 24 QMLMSWVERHQPLLEQHVLYAT----GTTGNLISR---ATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIF-FWDPLNA 95 (152)
T ss_dssp HHHHHHHHHTHHHHTTSEEEEE----TTHHHHHHH---HHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEE-ECCTTSC
T ss_pred HHHHHHHHHHHHHhCCCEEEEc----cHHHHHHHH---HhCceeEEEEecCCCCCchHHHHHHCCCccEEEE-cCCcccC
Confidence 3333344444443 6677766 456554433 1477777664321 136788888776777764 333 32
Q ss_pred CCcccCHHHHHHHHHhcCCEEEEe
Q 009604 299 FLRCVDVKLVSDLCHKKGAIVCID 322 (531)
Q Consensus 299 tG~v~dl~~I~~la~~~gi~lIvD 322 (531)
.....|...|.+.|-.++++++.-
T Consensus 96 ~~h~~D~~~IrR~A~~~~IP~~T~ 119 (152)
T 1b93_A 96 VPHDPDVKALLRLATVWNIPVATN 119 (152)
T ss_dssp CTTHHHHHHHHHHHHHTTCCEESS
T ss_pred CcccccHHHHHHHHHHcCCCEEeC
Confidence 222457889999999999998753
No 266
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=29.46 E-value=1.6e+02 Score=28.31 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=39.5
Q ss_pred cEEEeC-ChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhccc------CCcEEEEeCCCCHHHHHHhccCCCcEE
Q 009604 217 STVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK------MGITATVIDPADMEGLEAALNNNNVSL 289 (531)
Q Consensus 217 ~~i~~s-SG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~------~Gi~v~~vd~~d~e~Le~al~~~~tkl 289 (531)
.+++++ +|.-+-. ++..|++.|.+|++..-.-......+...... .++++...|..|.+.++++++. ...
T Consensus 27 ~vlVtGatG~iG~~-l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~ 103 (351)
T 3ruf_A 27 TWLITGVAGFIGSN-LLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG--VDH 103 (351)
T ss_dssp EEEEETTTSHHHHH-HHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTT--CSE
T ss_pred eEEEECCCcHHHHH-HHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcC--CCE
Confidence 355554 3443332 23456677877766432211111112121111 4678777888899999999874 555
Q ss_pred EEE
Q 009604 290 FFT 292 (531)
Q Consensus 290 V~l 292 (531)
|+-
T Consensus 104 Vih 106 (351)
T 3ruf_A 104 VLH 106 (351)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 267
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=28.66 E-value=1e+02 Score=31.31 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=38.0
Q ss_pred hccCCCEEEEcCCCccch------HHHHHhhcccCCcEEEEeCCC-------------CHHHHHHhccCCCcEEEEEeCC
Q 009604 235 LVPAGGHIVTTTDCYRKT------RIFIETVLPKMGITATVIDPA-------------DMEGLEAALNNNNVSLFFTESP 295 (531)
Q Consensus 235 ll~pGD~VIv~~~~y~~t------~~~~~~~l~~~Gi~v~~vd~~-------------d~e~Le~al~~~~tklV~lesP 295 (531)
.+++||+|-+..|..+.. +......++.+|.++++-+.. -.++|.+++.+..+++|++..-
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 367889888877775432 112223466778888765421 1467777776545888887443
Q ss_pred C
Q 009604 296 T 296 (531)
Q Consensus 296 ~ 296 (531)
.
T Consensus 119 G 119 (371)
T 3tla_A 119 G 119 (371)
T ss_dssp C
T ss_pred c
Confidence 3
No 268
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=28.47 E-value=31 Score=35.98 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=27.0
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
+....|...|++++++.||++|+.||+|-++
T Consensus 71 id~~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 101 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSRNVQVYGDVVL 101 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 3444688889999999999999999999984
No 269
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=28.35 E-value=75 Score=27.43 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=48.6
Q ss_pred CCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCC---HHHHHHhccCCCcEEEEEeCCC--CCCCcccCHHHHHHHHH
Q 009604 239 GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD---MEGLEAALNNNNVSLFFTESPT--NPFLRCVDVKLVSDLCH 313 (531)
Q Consensus 239 GD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d---~e~Le~al~~~~tklV~lesP~--NPtG~v~dl~~I~~la~ 313 (531)
|=+|+.+ ++|-.++++. .|+++..+.... -..+.+.|.+++..+|+. +|. ++.....|...|.+.|-
T Consensus 31 Gf~l~AT----~gTa~~L~e~---~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVIn-t~~pl~~~~h~~D~~~IrR~A~ 102 (134)
T 2xw6_A 31 RFPLVAT----GTTGRRIEEA---TGLTVEKLLSGPLGGDQQMGARVAEGRILAVIF-FRDPLTAQPHEPDVQALLRVCD 102 (134)
T ss_dssp TSCEEEC----HHHHHHHHHH---HCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEE-ECCTTTCCTTSCCSHHHHHHHH
T ss_pred CCEEEEc----cHHHHHHHHh---hCceEEEEEecCCCCcchHHHHHHCCCccEEEE-ccCcccCCCccchHHHHHHHHH
Confidence 5566655 4665554331 477777664322 236888888776777664 333 43322568999999999
Q ss_pred hcCCEEEE
Q 009604 314 KKGAIVCI 321 (531)
Q Consensus 314 ~~gi~lIv 321 (531)
.++++++.
T Consensus 103 ~~~IP~~T 110 (134)
T 2xw6_A 103 VHGVPLAT 110 (134)
T ss_dssp HHTCCEEC
T ss_pred HcCCCeEc
Confidence 99999875
No 270
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=28.19 E-value=1e+02 Score=32.98 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=66.0
Q ss_pred HHhccCCCEEEEcCCCccchHHHHH---hhcccC-CcEEEEeCCCCHHHHHHhccCCCcEEEEEe-CCC------CCCCc
Q 009604 233 LALVPAGGHIVTTTDCYRKTRIFIE---TVLPKM-GITATVIDPADMEGLEAALNNNNVSLFFTE-SPT------NPFLR 301 (531)
Q Consensus 233 ~all~pGD~VIv~~~~y~~t~~~~~---~~l~~~-Gi~v~~vd~~d~e~Le~al~~~~tklV~le-sP~------NPtG~ 301 (531)
.+|++.|--+|+-+..|+.....++ .+-+.+ .+.+.--+..+.+..+++++.. ..+|-+- .|. -.+|.
T Consensus 287 ~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aG-AD~vkVGiGpGSiCtTr~v~Gv 365 (556)
T 4af0_A 287 KLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAG-ADGLRIGMGSGSICITQEVMAV 365 (556)
T ss_dssp HHHHHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT-CSEEEECSSCSTTBCCTTTCCS
T ss_pred HHHHhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcC-CCEEeecCCCCcccccccccCC
Confidence 4566778555555556654433332 211122 4555444556777777777653 5555441 222 12343
Q ss_pred ccC----HHHHHHHHHhcCCEEEEeCCCCC-CccccccccCCcEEEECCccccccC
Q 009604 302 CVD----VKLVSDLCHKKGAIVCIDGTFAT-PLNQKALSLGADLVLHSATKFIGGH 352 (531)
Q Consensus 302 v~d----l~~I~~la~~~gi~lIvD~a~a~-~~~~~~l~~gaDivv~S~sK~lgg~ 352 (531)
-.| +.++++.++++|+++|.|.-.-. +-..+.+..|+|.|+- --+|+|.
T Consensus 366 G~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMl--GsllAGt 419 (556)
T 4af0_A 366 GRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMM--GGLLAGT 419 (556)
T ss_dssp CCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE--STTTTTB
T ss_pred CCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEE--chhhccc
Confidence 333 44566678889999999986432 3345678889998873 2344444
No 271
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=27.69 E-value=1.5e+02 Score=27.68 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=36.0
Q ss_pred ccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCC-CCCC-cccCHHHHHHHHHhcCC
Q 009604 261 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT-NPFL-RCVDVKLVSDLCHKKGA 317 (531)
Q Consensus 261 ~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~-NPtG-~v~dl~~I~~la~~~gi 317 (531)
...++++...|..|.+.++++++. ...|+..... ++.. .+.....+.+.|++.|+
T Consensus 42 ~~~~v~~~~~D~~d~~~l~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv 98 (289)
T 3e48_A 42 WRGKVSVRQLDYFNQESMVEAFKG--MDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGV 98 (289)
T ss_dssp GBTTBEEEECCTTCHHHHHHHTTT--CSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred hhCCCEEEEcCCCCHHHHHHHHhC--CCEEEEeCCCCccchhhHHHHHHHHHHHHHcCC
Confidence 345788888899999999999974 5566543322 2111 12234678888888875
No 272
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=27.63 E-value=2.2e+02 Score=26.36 Aligned_cols=53 Identities=21% Similarity=0.095 Sum_probs=32.9
Q ss_pred CCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCC--cccCHHHHHHHHHhcCC
Q 009604 263 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL--RCVDVKLVSDLCHKKGA 317 (531)
Q Consensus 263 ~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG--~v~dl~~I~~la~~~gi 317 (531)
.++++...|..|.+.++++++. ...|+.....++.. .+.-...+.+.|++.|+
T Consensus 45 ~~~~~~~~D~~d~~~l~~~~~~--~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~ 99 (287)
T 2jl1_A 45 QGVEVRHGDYNQPESLQKAFAG--VSKLLFISGPHYDNTLLIVQHANVVKAARDAGV 99 (287)
T ss_dssp TTCEEEECCTTCHHHHHHHTTT--CSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEEEeccCCHHHHHHHHhc--CCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCC
Confidence 3677777888899999999874 55565433322211 11123467777877775
No 273
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=27.48 E-value=87 Score=30.80 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=41.5
Q ss_pred CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC------C---CHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHH
Q 009604 238 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------A---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLV 308 (531)
Q Consensus 238 pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~------~---d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I 308 (531)
++..+++.-+.|+ -+++.+|++...+.. . ++.+|.+.++++++++||.|.-.+ -+.+
T Consensus 189 ~~~~~v~~H~af~-------Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~-------~~~~ 254 (312)
T 2o1e_A 189 EKKEFITQHTAFG-------YLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIAS-------SKVA 254 (312)
T ss_dssp SCCEEEESSCTTH-------HHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCC-------HHHH
T ss_pred CCCEEEEECCchH-------HHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-------hHHH
Confidence 4667777544432 234566777654421 1 345666667766788998765443 2445
Q ss_pred HHHHHhcCCEEE
Q 009604 309 SDLCHKKGAIVC 320 (531)
Q Consensus 309 ~~la~~~gi~lI 320 (531)
..++++.|+.++
T Consensus 255 ~~ia~e~g~~v~ 266 (312)
T 2o1e_A 255 DTLASEIGAKTE 266 (312)
T ss_dssp HHHHHHTCCEEE
T ss_pred HHHHHHhCCcEE
Confidence 556788888764
No 274
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=27.03 E-value=99 Score=30.76 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=39.9
Q ss_pred hccCCCEEEEcCCCccch---HHHH---HhhcccCCcEEEEeCCC-------------CHHHHHHhccCCCcEEEEEeCC
Q 009604 235 LVPAGGHIVTTTDCYRKT---RIFI---ETVLPKMGITATVIDPA-------------DMEGLEAALNNNNVSLFFTESP 295 (531)
Q Consensus 235 ll~pGD~VIv~~~~y~~t---~~~~---~~~l~~~Gi~v~~vd~~-------------d~e~Le~al~~~~tklV~lesP 295 (531)
.+++||+|-+..|..+.. ...+ ...++.+|.++++-+.. -.++|.+++.+..+++|+...-
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 478999998887776543 2222 23567789998865521 1466777776545888887444
Q ss_pred C
Q 009604 296 T 296 (531)
Q Consensus 296 ~ 296 (531)
.
T Consensus 88 G 88 (331)
T 4e5s_A 88 G 88 (331)
T ss_dssp C
T ss_pred c
Confidence 3
No 275
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=27.02 E-value=1.4e+02 Score=28.93 Aligned_cols=96 Identities=16% Similarity=0.086 Sum_probs=57.8
Q ss_pred EEEEcCCCccchHHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEE
Q 009604 241 HIVTTTDCYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV 319 (531)
Q Consensus 241 ~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~l 319 (531)
+|++....|.+....+...-+..++++..-|. .|+.++.++..-. ..+|.+-... ....+++++.+.|++.|..+
T Consensus 97 sVltd~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~G-AD~VlLi~a~---L~~~~l~~l~~~a~~lGl~~ 172 (272)
T 3tsm_A 97 SVLTDTPSFQGAPEFLTAARQACSLPALRKDFLFDPYQVYEARSWG-ADCILIIMAS---VDDDLAKELEDTAFALGMDA 172 (272)
T ss_dssp EEECCSTTTCCCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTT-CSEEEEETTT---SCHHHHHHHHHHHHHTTCEE
T ss_pred EEeccccccCCCHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcC-CCEEEEcccc---cCHHHHHHHHHHHHHcCCeE
Confidence 45555556667776665554556677654453 4666777776553 6666663321 12235778888999999988
Q ss_pred EEeCCCCCCccccccccCCcEE
Q 009604 320 CIDGTFATPLNQKALSLGADLV 341 (531)
Q Consensus 320 IvD~a~a~~~~~~~l~~gaDiv 341 (531)
++|-.-.. -....+..|+|++
T Consensus 173 lvevh~~e-El~~A~~~ga~iI 193 (272)
T 3tsm_A 173 LIEVHDEA-EMERALKLSSRLL 193 (272)
T ss_dssp EEEECSHH-HHHHHTTSCCSEE
T ss_pred EEEeCCHH-HHHHHHhcCCCEE
Confidence 88753211 1133455677755
No 276
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=26.97 E-value=34 Score=35.75 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=26.4
Q ss_pred CCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 296 TNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
....|...|++++++.||++|+.||+|-++
T Consensus 76 dp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~ 105 (485)
T 1wpc_A 76 RTKYGTRSQLQAAVTSLKNNGIQVYGDVVM 105 (485)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 334788889999999999999999999984
No 277
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=26.94 E-value=34 Score=35.68 Aligned_cols=30 Identities=7% Similarity=-0.071 Sum_probs=26.4
Q ss_pred CCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 296 TNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
....|...|++++++.||++|+.||+|-++
T Consensus 74 dp~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 103 (480)
T 1ud2_A 74 RTKYGTKAQLERAIGSLKSNDINVYGDVVM 103 (480)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 334788889999999999999999999984
No 278
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=26.45 E-value=35 Score=35.18 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=26.3
Q ss_pred CCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 296 TNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
....|...|++++++.||++|+.||+|-++
T Consensus 80 d~~~Gt~~df~~lv~~~H~~Gi~VilD~V~ 109 (435)
T 1mxg_A 80 ETRFGSKEELVRLIQTAHAYGIKVIADVVI 109 (435)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 334688889999999999999999999984
No 279
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=26.36 E-value=35 Score=36.06 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=26.5
Q ss_pred CCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 296 TNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
..-.|...|++++++.||++|+.||+|-++
T Consensus 75 dp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 104 (515)
T 1hvx_A 75 RTKYGTKAQYLQAIQAAHAAGMQVYADVVF 104 (515)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 334688889999999999999999999984
No 280
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=25.67 E-value=1.4e+02 Score=28.71 Aligned_cols=80 Identities=13% Similarity=0.052 Sum_probs=32.9
Q ss_pred CEEEEcCCCccchHHHHHhhcccCCcEEEE-eCC-CCHHHHHHhccCCCcEEEEEeCCCCCCCccc----CHHHHHHHHH
Q 009604 240 GHIVTTTDCYRKTRIFIETVLPKMGITATV-IDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCH 313 (531)
Q Consensus 240 D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~-vd~-~d~e~Le~al~~~~tklV~lesP~NPtG~v~----dl~~I~~la~ 313 (531)
|-|++++..+.-... +...++.+|+.+.+ +.+ .+.+.+++..+.. ...||+.+-...||.-. ++.++.+.++
T Consensus 127 dGvIipDlp~ee~~~-~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~-~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr 204 (271)
T 3nav_A 127 DSVLIADVPTNESQP-FVAAAEKFGIQPIFIAPPTASDETLRAVAQLG-KGYTYLLSRAGVTGAETKANMPVHALLERLQ 204 (271)
T ss_dssp CEEEETTSCGGGCHH-HHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC-CSCEEECCCC--------CCHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHH-HHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC-CCeEEEEeccCCCCcccCCchhHHHHHHHHH
Confidence 556666554433322 22445566665443 222 2344444443321 34555544333455432 2334444344
Q ss_pred hc-CCEEEE
Q 009604 314 KK-GAIVCI 321 (531)
Q Consensus 314 ~~-gi~lIv 321 (531)
++ ++++++
T Consensus 205 ~~~~~Pv~v 213 (271)
T 3nav_A 205 QFDAPPALL 213 (271)
T ss_dssp HTTCCCEEE
T ss_pred HhcCCCEEE
Confidence 43 556665
No 281
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=25.65 E-value=99 Score=28.98 Aligned_cols=34 Identities=9% Similarity=-0.035 Sum_probs=29.1
Q ss_pred cEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEE
Q 009604 287 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 321 (531)
Q Consensus 287 tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIv 321 (531)
+.+|++|-. |..|.....+++.++|++||++++.
T Consensus 168 Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 168 PAGVLCELT-NDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp SCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEEE
Confidence 577877766 6789999999999999999998873
No 282
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=25.62 E-value=2e+02 Score=31.89 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHhc---cCCCEEEEcC---CCccchHHHHHhhcccCCcEEEEeCCC-CHHHHHHhccCCCcEEEEEeCC
Q 009604 223 SGMSASTVMLLALV---PAGGHIVTTT---DCYRKTRIFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESP 295 (531)
Q Consensus 223 SG~~Ai~~al~all---~pGD~VIv~~---~~y~~t~~~~~~~l~~~Gi~v~~vd~~-d~e~Le~al~~~~tklV~lesP 295 (531)
.+.+.+...+..+. ...-+|++.. ..|.--..++..+++..|++|.....+ .++++.++..+.+..+|.++.-
T Consensus 577 ~~fe~Lr~~~~~~~~~~g~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl 656 (727)
T 1req_A 577 PEVEEARELVEEFEQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSL 656 (727)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEeee
Confidence 34555554444433 1223555543 345544556666788889999876543 5777766655445889998765
Q ss_pred CCCCCcccCHHHHHHHHHhcC---CEEEEeCCCCCCccccccccCCcEEEE
Q 009604 296 TNPFLRCVDVKLVSDLCHKKG---AIVCIDGTFATPLNQKALSLGADLVLH 343 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~g---i~lIvD~a~a~~~~~~~l~~gaDivv~ 343 (531)
. +.....++++++.+++.| ++|++=.+....-.......|+|-++.
T Consensus 657 ~--~~~~~~~~~vi~~L~~~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f~ 705 (727)
T 1req_A 657 A--GGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYT 705 (727)
T ss_dssp S--SCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHTTEEEEEC
T ss_pred c--HhHHHHHHHHHHHHHhcCCCCCEEEEcCCCccccHHHHHhCCCCEEEc
Confidence 4 334444778888888766 477764422111001113456666553
No 283
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=25.62 E-value=81 Score=25.50 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=35.8
Q ss_pred CHHHHHHhccCCCcEEEEEeCCCCCCCcccC----HHHHHHHHHhcCCE-EEEeCCCC
Q 009604 274 DMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI-VCIDGTFA 326 (531)
Q Consensus 274 d~e~Le~al~~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~-lIvD~a~a 326 (531)
+.+.|++.++++++..|++--|-|+.|..-+ ..+.++..++.+++ ..+||-+.
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERlT 96 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSCC
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4677888787656888999999998887755 34444433333765 45788654
No 284
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=25.25 E-value=39 Score=35.85 Aligned_cols=29 Identities=10% Similarity=0.005 Sum_probs=26.3
Q ss_pred CCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 297 NPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 297 NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
...|...|++++++.||++|+.||+|-++
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~ 115 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVVP 115 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEee
Confidence 45788899999999999999999999984
No 285
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=25.15 E-value=33 Score=36.08 Aligned_cols=30 Identities=7% Similarity=0.065 Sum_probs=26.4
Q ss_pred CCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 296 TNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
..-.|+..|++++++.||++|+.||+|-++
T Consensus 73 dp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 102 (549)
T 4aie_A 73 DPQYGTMADMDELISKAKEHHIKIVMDLVV 102 (549)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 334688889999999999999999999985
No 286
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=24.92 E-value=1.2e+02 Score=30.17 Aligned_cols=62 Identities=18% Similarity=0.058 Sum_probs=38.6
Q ss_pred hccCCCEEEEcCCCccch------HHHHHhhcccCCcEEEEeCCC-------------CHHHHHHhccCCCcEEEEEeCC
Q 009604 235 LVPAGGHIVTTTDCYRKT------RIFIETVLPKMGITATVIDPA-------------DMEGLEAALNNNNVSLFFTESP 295 (531)
Q Consensus 235 ll~pGD~VIv~~~~y~~t------~~~~~~~l~~~Gi~v~~vd~~-------------d~e~Le~al~~~~tklV~lesP 295 (531)
.+++||+|-+..|..+.. +......++.+|.++..-+.. -.++|.+++.+..+++|++..-
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 478999998888776532 112223567789888764421 1456777776545888886443
Q ss_pred C
Q 009604 296 T 296 (531)
Q Consensus 296 ~ 296 (531)
.
T Consensus 89 G 89 (336)
T 3sr3_A 89 G 89 (336)
T ss_dssp C
T ss_pred c
Confidence 3
No 287
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=24.80 E-value=1.4e+02 Score=25.06 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=33.7
Q ss_pred cCCcEEEEeCCCCHHHHHHhccC----------CCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEE
Q 009604 262 KMGITATVIDPADMEGLEAALNN----------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 320 (531)
Q Consensus 262 ~~Gi~v~~vd~~d~e~Le~al~~----------~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lI 320 (531)
.+++.+..+...|+++|.+.|++ +.+-+|-++.-. ...|+.+|.++++++|+.+|
T Consensus 14 ~~~l~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~----~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 14 SFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE----SPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp CCCCEEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC----SSCCHHHHHHHHHTTTCEEE
T ss_pred eeeEEEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEccccC----ChHHHHHHHHHHHHcCCEEE
Confidence 34566666656677776665542 112233333222 23689999999999998775
No 288
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=24.80 E-value=60 Score=27.74 Aligned_cols=75 Identities=15% Similarity=0.249 Sum_probs=46.7
Q ss_pred CccchHHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhc---CCEEEEeC
Q 009604 248 CYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK---GAIVCIDG 323 (531)
Q Consensus 248 ~y~~t~~~~~~~l~~~Gi~v~~vd~-~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~---gi~lIvD~ 323 (531)
.|.--..++...++..|.++.+... ..++++.+++.+.+..+|.++.-..+ ....++++.+..++. ++.+++=.
T Consensus 15 ~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~--~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 15 CHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQ--GEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSST--HHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcC--cHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 4444445566678888999987653 36778777665445788888655522 233455666666654 36666644
Q ss_pred C
Q 009604 324 T 324 (531)
Q Consensus 324 a 324 (531)
.
T Consensus 93 ~ 93 (137)
T 1ccw_A 93 N 93 (137)
T ss_dssp S
T ss_pred C
Confidence 3
No 289
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=24.76 E-value=1.1e+02 Score=28.87 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=36.7
Q ss_pred ccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CEEEE
Q 009604 261 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCI 321 (531)
Q Consensus 261 ~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~g-i~lIv 321 (531)
...|+++...|..|.+.|.++++. ...|+...... .+.....+.+.|++.| +.-++
T Consensus 54 ~~~~v~~v~~D~~d~~~l~~~~~~--~d~vi~~a~~~---~~~~~~~l~~aa~~~g~v~~~v 110 (308)
T 1qyc_A 54 KASGANIVHGSIDDHASLVEAVKN--VDVVISTVGSL---QIESQVNIIKAIKEVGTVKRFF 110 (308)
T ss_dssp HTTTCEEECCCTTCHHHHHHHHHT--CSEEEECCCGG---GSGGGHHHHHHHHHHCCCSEEE
T ss_pred HhCCCEEEEeccCCHHHHHHHHcC--CCEEEECCcch---hhhhHHHHHHHHHhcCCCceEe
Confidence 345888887888899999999874 55666433221 1233467888888877 54333
No 290
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=24.68 E-value=98 Score=28.75 Aligned_cols=35 Identities=6% Similarity=-0.091 Sum_probs=29.8
Q ss_pred cEEEEEeCC-CCCCCcccCHHHHHHHHHhcCCEEEE
Q 009604 287 VSLFFTESP-TNPFLRCVDVKLVSDLCHKKGAIVCI 321 (531)
Q Consensus 287 tklV~lesP-~NPtG~v~dl~~I~~la~~~gi~lIv 321 (531)
+..|++|-. -|..|.+...+++.++|++||++++.
T Consensus 159 Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 159 PAGAICEIVSQKDEGSMAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp SBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEE
T ss_pred ceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 678888873 46789999999999999999998873
No 291
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=24.57 E-value=35 Score=35.13 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=25.9
Q ss_pred CCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 297 NPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 297 NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
.-.|...|++++++.||++|+.||+|-++
T Consensus 64 p~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 92 (441)
T 1lwj_A 64 AEYGSEREFKEMIEAFHDSGIKVVLDLPI 92 (441)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34688889999999999999999999984
No 292
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=24.48 E-value=89 Score=28.69 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=51.2
Q ss_pred CCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEE--eCCCCCCccccccccCCcEEEECCccccc
Q 009604 273 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI--DGTFATPLNQKALSLGADLVLHSATKFIG 350 (531)
Q Consensus 273 ~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIv--D~a~a~~~~~~~l~~gaDivv~S~sK~lg 350 (531)
.+.++|+++++.. ...||+ -+|.+..++++.+.++++|-.+++ |-.-+ +..+ +.+.+++ .+..+
T Consensus 17 r~~~~l~~al~s~-~~~ifl-----l~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~G--ls~d--~~ai~fL----~~~~~ 82 (192)
T 3kts_A 17 HNQKDMEKILELD-LTYMVM-----LETHVAQLKALVKYAQAGGKKVLLHADLVNG--LKND--DYAIDFL----CTEIC 82 (192)
T ss_dssp SSSHHHHHHTTSS-CCEEEE-----CSEETTTHHHHHHHHHHTTCEEEEEGGGEET--CCCS--HHHHHHH----HHTTC
T ss_pred cCHHHHHHHHcCC-CCEEEE-----ecCcHHHHHHHHHHHHHcCCeEEEecCchhc--cCCc--HHHHHHH----HhCCC
Confidence 4789999999874 678887 247888999999999999866555 33322 1111 1112222 13333
Q ss_pred cCCCceEEEEEeChHHHHHHHH
Q 009604 351 GHNDVLAGSISGSGKLVTQIRN 372 (531)
Q Consensus 351 g~g~v~gG~iv~~~~li~~l~~ 372 (531)
+ -|++..+...+...++
T Consensus 83 p-----dGIIsTk~~~i~~Ak~ 99 (192)
T 3kts_A 83 P-----DGIISTRGNAIMKAKQ 99 (192)
T ss_dssp C-----SEEEESCHHHHHHHHH
T ss_pred C-----CEEEeCcHHHHHHHHH
Confidence 2 3777777777777665
No 293
>1lu0_A CMTI-I, trypsin inhibitor I; serine protease inhibitor, metal coordination, hydrolase INH; 1.03A {Cucurbita maxima} SCOP: g.3.2.1 PDB: 2v1v_A 1cti_A 1ppe_I 2cti_A 2sta_I 3cti_A 2btc_I 2stb_I 2eti_A 2it7_A
Probab=23.70 E-value=18 Score=22.71 Aligned_cols=15 Identities=40% Similarity=0.855 Sum_probs=12.5
Q ss_pred cccccccccCCCCcccccCCCCC
Q 009604 7 SSQKILSFSSSCSSFECRSDPDF 29 (531)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (531)
.|||++ .+|..|.|-
T Consensus 2 ~CPrIl--------m~CK~DsDC 16 (29)
T 1lu0_A 2 VCPRIL--------LECKKDSDC 16 (29)
T ss_dssp CCCSCC--------CBCSSGGGS
T ss_pred CCchhh--------hhccccccc
Confidence 389999 899998874
No 294
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=23.32 E-value=38 Score=35.22 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=26.6
Q ss_pred CCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 296 TNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
+...|...|++++++.||++|+.||+|-++
T Consensus 91 dp~~Gt~~df~~lv~~~H~~Gi~VilD~V~ 120 (478)
T 2guy_A 91 NENYGTADDLKALSSALHERGMYLMVDVVA 120 (478)
T ss_dssp CTTSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 344788899999999999999999999985
No 295
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=22.97 E-value=2.2e+02 Score=29.02 Aligned_cols=89 Identities=20% Similarity=0.169 Sum_probs=48.9
Q ss_pred HHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEe-CCCC------CCCc-ccCHH---HHHHHHHhcCCEEEEe
Q 009604 254 IFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTE-SPTN------PFLR-CVDVK---LVSDLCHKKGAIVCID 322 (531)
Q Consensus 254 ~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~le-sP~N------PtG~-v~dl~---~I~~la~~~gi~lIvD 322 (531)
..++.+-+.+++++..-...+.++.+.+++.. ..+|.+- .|.+ ..|. ..++. ++.+.+++.+++||.|
T Consensus 174 e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aG-AD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~ 252 (400)
T 3ffs_A 174 RTLKEIKSKMNIDVIVGNVVTEEATKELIENG-ADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIAD 252 (400)
T ss_dssp HHHHHHHTTCCCEEEEEEECSHHHHHHHHHTT-CSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEE
T ss_pred HHHHHHHhcCCCeEEEeecCCHHHHHHHHHcC-CCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEec
Confidence 44444334457766533446788888777664 6777761 0111 0111 22344 4444455679999998
Q ss_pred CCCCCCc-cccccccCCcEEEE
Q 009604 323 GTFATPL-NQKALSLGADLVLH 343 (531)
Q Consensus 323 ~a~a~~~-~~~~l~~gaDivv~ 343 (531)
.=..++- ....+.+|+|.|..
T Consensus 253 GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 253 GGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp SCCCSHHHHHHHHTTTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 7654332 24456778887653
No 296
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=22.80 E-value=1.4e+02 Score=28.52 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=37.4
Q ss_pred cCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CEEEE
Q 009604 262 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCI 321 (531)
Q Consensus 262 ~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~g-i~lIv 321 (531)
..++++...|..|.+.+.++++. ...|+..... . .+.-...+.+.|++.| +.-++
T Consensus 55 ~~~v~~v~~D~~d~~~l~~a~~~--~d~vi~~a~~--~-~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 55 SMGVTIIEGEMEEHEKMVSVLKQ--VDIVISALPF--P-MISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp HTTCEEEECCTTCHHHHHHHHTT--CSEEEECCCG--G-GSGGGHHHHHHHHHHCCCCEEE
T ss_pred cCCcEEEEecCCCHHHHHHHHcC--CCEEEECCCc--c-chhhHHHHHHHHHHhCCccEEe
Confidence 35788888899999999999975 5566643221 1 1334567888888887 64444
No 297
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=22.36 E-value=41 Score=34.25 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=25.2
Q ss_pred CCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 298 PFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 298 PtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
..|...|++++++.||++|+.||+|-++
T Consensus 64 ~~Gt~~d~~~lv~~~h~~Gi~VilD~V~ 91 (405)
T 1ht6_A 64 KYGNAAELKSLIGALHGKGVQAIADIVI 91 (405)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3588888999999999999999999984
No 298
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=22.36 E-value=3.9e+02 Score=23.30 Aligned_cols=37 Identities=8% Similarity=-0.022 Sum_probs=25.6
Q ss_pred HHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEE
Q 009604 279 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 320 (531)
Q Consensus 279 e~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lI 320 (531)
...++++ .-+|++ +..|...++-++++.++++|+.+|
T Consensus 104 ~~~~~~~-DvvI~i----S~SG~t~~~i~~~~~ak~~g~~vI 140 (196)
T 2yva_A 104 RALGHAG-DVLLAI----STRGNSRDIVKAVEAAVTRDMTIV 140 (196)
T ss_dssp HHHCCTT-CEEEEE----CSSSCCHHHHHHHHHHHHTTCEEE
T ss_pred HhcCCCC-CEEEEE----eCCCCCHHHHHHHHHHHHCCCEEE
Confidence 3456654 344444 345888888899999999997665
No 299
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=22.18 E-value=42 Score=35.04 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.9
Q ss_pred CCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 299 FLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 299 tG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
.|...|++++++.||++|+.||+|-++
T Consensus 78 ~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 104 (488)
T 1wza_A 78 YGTLEDFHKLVEAAHQRGIKVIIDLPI 104 (488)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 688889999999999999999999984
No 300
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=22.18 E-value=1e+02 Score=29.11 Aligned_cols=35 Identities=9% Similarity=-0.147 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEEEE
Q 009604 286 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 321 (531)
Q Consensus 286 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~lIv 321 (531)
++..|++|-. |..|.....+++.++|++||++++.
T Consensus 178 ~Pa~VicEi~-~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 178 VPITTICEMM-GDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp CSEEEEEEEB-CTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 3678887776 5779999999999999999998874
No 301
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=22.00 E-value=1.4e+02 Score=28.90 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=40.2
Q ss_pred CCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCC----C---CHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 009604 238 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSD 310 (531)
Q Consensus 238 pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~----~---d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~ 310 (531)
++..+++.-+.|+- +++.+|++...+.. . ++.+|.+.++++++++||.|.-.++- .+..
T Consensus 189 ~~~~~v~~H~af~Y-------f~~~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~-------~~~~ 254 (291)
T 1pq4_A 189 PQRKFIVFHPSWAY-------FARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTMVFGETQFSTK-------SSEA 254 (291)
T ss_dssp SCCEEEESSCCCHH-------HHHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCEEEEETTSCCH-------HHHH
T ss_pred CCCEEEEECCchHH-------HHHHCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChH-------HHHH
Confidence 46778876555432 34556776554321 1 34556666666668888887655431 2234
Q ss_pred HHHhcCCEEEE
Q 009604 311 LCHKKGAIVCI 321 (531)
Q Consensus 311 la~~~gi~lIv 321 (531)
++++.|+.++.
T Consensus 255 ia~~~g~~v~~ 265 (291)
T 1pq4_A 255 IAAEIGAGVEL 265 (291)
T ss_dssp HHHHHTCEEEE
T ss_pred HHHHcCCeEEE
Confidence 56777776643
No 302
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=21.85 E-value=44 Score=34.40 Aligned_cols=30 Identities=23% Similarity=0.073 Sum_probs=26.6
Q ss_pred CCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 296 TNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 296 ~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
....|...|++++++.||++|+.||+|-++
T Consensus 75 dp~~Gt~~d~~~lv~~ah~~Gi~vilD~V~ 104 (424)
T 2dh2_A 75 DPNFGSKEDFDSLLQSAKKKSIRVILDLTP 104 (424)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred CccCCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 344788899999999999999999999985
No 303
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.71 E-value=1.1e+02 Score=29.12 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=50.9
Q ss_pred CEEEEcC---CCccchHHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhc
Q 009604 240 GHIVTTT---DCYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK 315 (531)
Q Consensus 240 D~VIv~~---~~y~~t~~~~~~~l~~~Gi~v~~vd~-~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~ 315 (531)
.+|++.. ..|.--..++...++..|.++.++.. ..++++.+++.+.++.+|.+..-. +.....+.++.+..++.
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~--~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALM--TTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCC--TTTTTHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeec--cCCHHHHHHHHHHHHhc
Confidence 3455432 23443445566678888999887653 356777666654457788875543 33445678888888775
Q ss_pred C--CEEEEeC
Q 009604 316 G--AIVCIDG 323 (531)
Q Consensus 316 g--i~lIvD~ 323 (531)
+ +++++=.
T Consensus 202 ~~~~~v~vGG 211 (258)
T 2i2x_B 202 GIKIPFACGG 211 (258)
T ss_dssp TCCCCEEEES
T ss_pred CCCCcEEEEC
Confidence 4 6666643
No 304
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=21.59 E-value=1.8e+02 Score=27.24 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=37.0
Q ss_pred cCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CEEEE
Q 009604 262 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCI 321 (531)
Q Consensus 262 ~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~g-i~lIv 321 (531)
..|+++...|..|.+.+.++++. ...|+...... .+.....+.+.|++.| +.-++
T Consensus 54 ~~~v~~v~~D~~d~~~l~~~~~~--~d~vi~~a~~~---~~~~~~~l~~aa~~~g~v~~~v 109 (307)
T 2gas_A 54 SLGVILLEGDINDHETLVKAIKQ--VDIVICAAGRL---LIEDQVKIIKAIKEAGNVKKFF 109 (307)
T ss_dssp HTTCEEEECCTTCHHHHHHHHTT--CSEEEECSSSS---CGGGHHHHHHHHHHHCCCSEEE
T ss_pred hCCCEEEEeCCCCHHHHHHHHhC--CCEEEECCccc---ccccHHHHHHHHHhcCCceEEe
Confidence 35788888899999999999974 55666433221 1344567888888877 54333
No 305
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=21.49 E-value=2.4e+02 Score=25.61 Aligned_cols=93 Identities=16% Similarity=0.083 Sum_probs=54.0
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHh-ccCCCcEEEEEeC
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA-LNNNNVSLFFTES 294 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~a-l~~~~tklV~les 294 (531)
.++++++.|.-+-.+ ...|.+.|. |++-+..-. . ++. +. .|+.+...|..|.+.|+++ +.. .++|++..
T Consensus 10 ~~viI~G~G~~G~~l-a~~L~~~g~-v~vid~~~~-~---~~~-~~-~~~~~i~gd~~~~~~l~~a~i~~--ad~vi~~~ 79 (234)
T 2aef_A 10 RHVVICGWSESTLEC-LRELRGSEV-FVLAEDENV-R---KKV-LR-SGANFVHGDPTRVSDLEKANVRG--ARAVIVDL 79 (234)
T ss_dssp CEEEEESCCHHHHHH-HHHSTTSEE-EEEESCGGG-H---HHH-HH-TTCEEEESCTTCHHHHHHTTCTT--CSEEEECC
T ss_pred CEEEEECCChHHHHH-HHHHHhCCe-EEEEECCHH-H---HHH-Hh-cCCeEEEcCCCCHHHHHhcCcch--hcEEEEcC
Confidence 468889888755433 344555565 555433221 1 212 22 5788877788899999877 543 67777765
Q ss_pred CCCCCCcccCHHHHHHHHHhcC--CEEEEeC
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKG--AIVCIDG 323 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~g--i~lIvD~ 323 (531)
++. ..-..++..+++.+ +.+++..
T Consensus 80 ~~d-----~~n~~~~~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 80 ESD-----SETIHCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp SCH-----HHHHHHHHHHHHHCSSSEEEEEC
T ss_pred CCc-----HHHHHHHHHHHHHCCCCeEEEEE
Confidence 541 11224556677754 4566543
No 306
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=21.45 E-value=2.8e+02 Score=25.01 Aligned_cols=76 Identities=9% Similarity=-0.061 Sum_probs=41.0
Q ss_pred HHHhccCC-CEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 009604 232 LLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSD 310 (531)
Q Consensus 232 l~all~pG-D~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~ 310 (531)
+..|++.| -+|++..-.-.. + ..+...++++...|..|.++++++++. ...|+.+... .......+.+.+
T Consensus 40 ~~~L~~~G~~~V~~~~R~~~~----~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~D~vv~~a~~--~~~~~~~~~~~~ 110 (236)
T 3qvo_A 40 INQLADKQTIKQTLFARQPAK----I-HKPYPTNSQIIMGDVLNHAALKQAMQG--QDIVYANLTG--EDLDIQANSVIA 110 (236)
T ss_dssp HHHHTTCTTEEEEEEESSGGG----S-CSSCCTTEEEEECCTTCHHHHHHHHTT--CSEEEEECCS--TTHHHHHHHHHH
T ss_pred HHHHHhCCCceEEEEEcChhh----h-cccccCCcEEEEecCCCHHHHHHHhcC--CCEEEEcCCC--CchhHHHHHHHH
Confidence 34567788 455543211110 0 112233677777788899999999874 5666643321 111122455666
Q ss_pred HHHhcC
Q 009604 311 LCHKKG 316 (531)
Q Consensus 311 la~~~g 316 (531)
.+++.+
T Consensus 111 ~~~~~~ 116 (236)
T 3qvo_A 111 AMKACD 116 (236)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 666654
No 307
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=21.40 E-value=43 Score=34.89 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=27.0
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
++.-.|...|++++++.||++|+.||+|-++
T Consensus 90 id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~ 120 (484)
T 2aaa_A 90 VNSNFGTADNLKSLSDALHARGMYLMVDVVP 120 (484)
T ss_dssp ECTTTCCHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3444788899999999999999999999984
No 308
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=21.35 E-value=38 Score=37.47 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=25.5
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCEEEEeCCCC
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 326 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a 326 (531)
|..|++...+++++++.||++|+.||+|-++.
T Consensus 247 ~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~N 278 (714)
T 2ya0_A 247 PKNPEKRIAEFKNLINEIHKRGMGAILDVVYN 278 (714)
T ss_dssp TTSTTHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCccchHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 33444446789999999999999999999853
No 309
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=21.33 E-value=34 Score=35.68 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=26.9
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
+....|...|++++++.||++|+.||+|-++
T Consensus 67 idp~~Gt~~d~~~lv~~~h~~Gi~VilD~V~ 97 (471)
T 1jae_A 67 INTRSGDESAFTDMTRRCNDAGVRIYVDAVI 97 (471)
T ss_dssp SEETTEEHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 4444788889999999999999999999984
No 310
>1mct_I Trypsin inhibitor A; complex(proteinase/inhibitor); 1.60A {Momordica charantia} SCOP: g.3.2.1 PDB: 1f2s_I
Probab=21.29 E-value=19 Score=22.37 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=12.3
Q ss_pred cccccccccCCCCcccccCCCCC
Q 009604 7 SSQKILSFSSSCSSFECRSDPDF 29 (531)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (531)
.|||++ .+|..|.|-
T Consensus 2 ~CPrIl--------m~Ck~DsDC 16 (28)
T 1mct_I 2 ICPRIW--------MECTRDSDC 16 (28)
T ss_dssp CEECCC--------CBCSSGGGS
T ss_pred CCchhh--------hhccccccc
Confidence 389999 899988874
No 311
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=21.04 E-value=52 Score=35.36 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=27.0
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCEEEEeCCCC
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 326 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~gi~lIvD~a~a 326 (531)
|..-.|...|++++++.||++|+.||+|-++.
T Consensus 211 idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 242 (583)
T 1ea9_C 211 IDPQFGDKDTLKKLVDLCHERGIRVLLDAVFN 242 (583)
T ss_dssp CCTTTCCHHHHHHHHHHHTTTTCEEEEECCCS
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 34446788899999999999999999999853
No 312
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=20.81 E-value=44 Score=34.41 Aligned_cols=27 Identities=26% Similarity=0.392 Sum_probs=23.4
Q ss_pred CCcccCHHHHHHHHHhcCCEEEEeCCC
Q 009604 299 FLRCVDVKLVSDLCHKKGAIVCIDGTF 325 (531)
Q Consensus 299 tG~v~dl~~I~~la~~~gi~lIvD~a~ 325 (531)
.|...|++++++.||++|+.||+|-++
T Consensus 80 ~Gt~~~~~~lv~~~h~~Gi~vi~D~V~ 106 (449)
T 3dhu_A 80 YGTLADFKALTDRAHELGMKVMLDIVY 106 (449)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 456667899999999999999999984
No 313
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=20.43 E-value=29 Score=38.47 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.5
Q ss_pred CcccCHHHHHHHHHhcCCEEEEeCCCC
Q 009604 300 LRCVDVKLVSDLCHKKGAIVCIDGTFA 326 (531)
Q Consensus 300 G~v~dl~~I~~la~~~gi~lIvD~a~a 326 (531)
|+..+++++++.||++|+.||+|-++.
T Consensus 313 ~~~~dfk~LV~~aH~~GI~VIlDvV~N 339 (718)
T 2e8y_A 313 TRKTELKQMINTLHQHGLRVILDVVFN 339 (718)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ccHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 346789999999999999999999853
No 314
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=20.41 E-value=2.5e+02 Score=22.70 Aligned_cols=89 Identities=10% Similarity=0.122 Sum_probs=46.8
Q ss_pred CcEEEeCChHHHHHHHHHHhccCCCEEEEcCCCccchHHHHHhhcccCCcEEEEeCCCCHHHHHHh-ccCCCcEEEEEeC
Q 009604 216 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA-LNNNNVSLFFTES 294 (531)
Q Consensus 216 e~~i~~sSG~~Ai~~al~all~pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~e~Le~a-l~~~~tklV~les 294 (531)
..+++++.|.-+..++ ..+.+.|.+|++.+.. ....+ .+...+..+...|..+.+.++++ +.. ..+|+++.
T Consensus 7 ~~v~I~G~G~iG~~~a-~~l~~~g~~v~~~d~~----~~~~~-~~~~~~~~~~~~d~~~~~~l~~~~~~~--~d~vi~~~ 78 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIV-KELHRMGHEVLAVDIN----EEKVN-AYASYATHAVIANATEENELLSLGIRN--FEYVIVAI 78 (144)
T ss_dssp CSEEEECCSHHHHHHH-HHHHHTTCCCEEEESC----HHHHH-TTTTTCSEEEECCTTCHHHHHTTTGGG--CSEEEECC
T ss_pred CcEEEECCCHHHHHHH-HHHHHCCCEEEEEeCC----HHHHH-HHHHhCCEEEEeCCCCHHHHHhcCCCC--CCEEEECC
Confidence 3578888887554433 3344556555443221 11122 23444666655576777777765 432 67787766
Q ss_pred CCCCCCcccCHHHHHHHHHhcC
Q 009604 295 PTNPFLRCVDVKLVSDLCHKKG 316 (531)
Q Consensus 295 P~NPtG~v~dl~~I~~la~~~g 316 (531)
+... ..-..+.+.+++.+
T Consensus 79 ~~~~----~~~~~~~~~~~~~~ 96 (144)
T 2hmt_A 79 GANI----QASTLTTLLLKELD 96 (144)
T ss_dssp CSCH----HHHHHHHHHHHHTT
T ss_pred CCch----HHHHHHHHHHHHcC
Confidence 5421 01124556666655
No 315
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=20.17 E-value=1.5e+02 Score=29.05 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=33.2
Q ss_pred cccCCcEEEEeCC------C---CHHHHHHhccCCCcEEEEEeCCCCCCCcccCHHHHHHHHHhcCCEE
Q 009604 260 LPKMGITATVIDP------A---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV 319 (531)
Q Consensus 260 l~~~Gi~v~~vd~------~---d~e~Le~al~~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~l 319 (531)
++.+|++...+.. . ++.+|.+.++++++++||.|.-.++ +.+..++++.|+.+
T Consensus 204 a~~yGl~~~~~~~i~~~~ePs~~~l~~l~~~ik~~~v~~If~e~~~~~-------k~~~~ia~e~g~~v 265 (307)
T 3ujp_A 204 ARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD-------KGQKQVAQATGARF 265 (307)
T ss_dssp HHHTTCEEEEEESSCCSSCCCHHHHHHHHHHHHTTTCSEEEEETTSCS-------HHHHHTTTTTCCEE
T ss_pred HHHCCCcEEEeeccCCCCCCCHHHHHHHHHHHHhcCCcEEEEeCCCCh-------HHHHHHHHHhCCce
Confidence 4566777654421 1 3556666666667889998765554 34556677778775
No 316
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=20.15 E-value=5.7e+02 Score=25.38 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=43.9
Q ss_pred CCCEEEEcCCCccchHHHHHhhcccCCcE---EEEeCCCCHHHH-HHh------ccCCCcEEEEEeCCCCCCC------c
Q 009604 238 AGGHIVTTTDCYRKTRIFIETVLPKMGIT---ATVIDPADMEGL-EAA------LNNNNVSLFFTESPTNPFL------R 301 (531)
Q Consensus 238 pGD~VIv~~~~y~~t~~~~~~~l~~~Gi~---v~~vd~~d~e~L-e~a------l~~~~tklV~lesP~NPtG------~ 301 (531)
+|..++.-+.++..... .++++|+. +....+.+.+++ .+. +.+.++++|++.+.....- .
T Consensus 57 ~g~~vlyId~E~s~~~~----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~ 132 (333)
T 3io5_A 57 PDAVCLFYDSEFGITPA----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDA 132 (333)
T ss_dssp TTCEEEEEESSCCCCHH----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC------
T ss_pred CCceEEEEeccchhhHH----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCc
Confidence 36777766655543222 23334442 333445565554 222 4555689999999886531 1
Q ss_pred c--------cC-------HHHHHHHHHhcCCEEEE
Q 009604 302 C--------VD-------VKLVSDLCHKKGAIVCI 321 (531)
Q Consensus 302 v--------~d-------l~~I~~la~~~gi~lIv 321 (531)
. .. +.+|..+++++|+.+|+
T Consensus 133 ~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 133 LNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp --------CTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 1 11 33455578889987664
Done!