Query 009605
Match_columns 531
No_of_seqs 55 out of 57
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 15:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05708 DUF830: Orthopoxvirus 99.4 2.1E-12 4.6E-17 114.4 8.8 101 224-341 1-101 (158)
2 PRK11479 hypothetical protein; 99.1 2.1E-10 4.5E-15 115.0 11.0 179 218-471 58-242 (274)
3 PRK10030 hypothetical protein; 99.0 1.5E-09 3.3E-14 103.4 11.7 99 223-339 19-117 (197)
4 PRK11470 hypothetical protein; 98.7 1.1E-07 2.4E-12 92.0 12.1 102 222-339 6-107 (200)
5 PF05382 Amidase_5: Bacterioph 86.5 2.1 4.5E-05 40.4 6.5 54 223-296 74-127 (145)
6 PF05257 CHAP: CHAP domain; I 84.3 2.6 5.7E-05 36.7 5.8 43 221-277 59-102 (124)
7 TIGR02219 phage_NlpC_fam putat 84.0 1.2 2.5E-05 40.3 3.6 54 219-295 71-124 (134)
8 PF07313 DUF1460: Protein of u 79.1 3.6 7.9E-05 41.0 5.3 58 222-295 151-208 (216)
9 COG3863 Uncharacterized distan 77.1 5.4 0.00012 40.1 5.8 96 218-340 72-173 (231)
10 PF00877 NLPC_P60: NlpC/P60 fa 65.3 6.2 0.00014 33.3 2.9 37 219-275 46-82 (105)
11 PRK10838 spr outer membrane li 54.5 23 0.00051 34.7 5.1 52 219-295 123-175 (190)
12 PF01436 NHL: NHL repeat; Int 49.4 27 0.00058 23.9 3.4 18 259-277 6-23 (28)
13 PRK13914 invasion associated s 42.3 42 0.00091 37.5 5.3 38 219-276 421-458 (481)
14 COG5008 PilU Tfp pilus assembl 41.0 16 0.00035 38.9 1.8 109 147-263 110-232 (375)
15 PF14133 DUF4300: Domain of un 37.8 26 0.00057 35.9 2.7 37 254-295 185-221 (250)
16 TIGR02594 conserved hypothetic 35.3 78 0.0017 29.1 5.1 27 423-450 30-56 (129)
17 PRK15231 fimbrial adhesin prot 34.7 38 0.00082 32.7 3.0 101 159-288 10-117 (150)
18 PF05382 Amidase_5: Bacterioph 29.4 39 0.00084 32.1 2.2 30 427-458 24-54 (145)
19 PF07646 Kelch_2: Kelch motif; 29.4 56 0.0012 24.2 2.7 16 254-272 2-17 (49)
20 TIGR01293 Kv_beta voltage-depe 28.5 68 0.0015 32.4 3.9 63 375-464 95-157 (317)
21 PF04970 LRAT: Lecithin retino 28.1 2.4E+02 0.0053 24.8 6.8 92 222-340 4-106 (125)
22 COG0791 Spr Cell wall-associat 27.0 1.6E+02 0.0035 27.6 5.8 44 205-263 115-163 (197)
23 smart00739 KOW KOW (Kyprides, 25.7 1.2E+02 0.0027 19.7 3.5 23 225-263 2-24 (28)
24 PF07576 BRAP2: BRCA1-associat 24.8 49 0.0011 29.9 1.9 20 319-338 60-80 (110)
25 PF07494 Reg_prop: Two compone 24.1 70 0.0015 21.4 2.1 12 261-272 10-21 (24)
26 TIGR02594 conserved hypothetic 23.8 1.7E+02 0.0036 26.9 5.2 38 224-278 73-112 (129)
27 TIGR03228 anthran_1_2_A anthra 21.3 2.4E+02 0.0053 31.0 6.6 115 216-362 39-162 (438)
28 KOG4456 Inner centromere prote 21.0 1.6E+02 0.0035 28.1 4.5 70 334-410 41-119 (134)
29 PF09124 Endonuc-dimeris: T4 r 20.3 1.2E+02 0.0026 25.0 3.1 34 394-439 15-48 (54)
No 1
>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C.
Probab=99.36 E-value=2.1e-12 Score=114.36 Aligned_cols=101 Identities=23% Similarity=0.360 Sum_probs=74.4
Q ss_pred cCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhhhhccCCCC
Q 009605 224 EIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWDFEVNKDDS 303 (531)
Q Consensus 224 dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~~kd~a 303 (531)
.+|+||+|... |. +.++..++-+|++..||++|++.+.+++.+|+|+.. .++|++.++++|.+ .
T Consensus 1 ~l~~GDIil~~---~~-~~~s~~i~~~t~~~~~HvgI~~~~~~~~~~viea~~-----~~Gv~~~~l~~~~~------~- 64 (158)
T PF05708_consen 1 KLQTGDIILTR---GK-SSLSKAIRPVTSSPYSHVGIVIGDEGQEPYVIEATP-----GDGVRLEPLSDFLK------R- 64 (158)
T ss_dssp ---TT-EEEEE---E--SCCHHHHHHHHTSS--EEEEEEEETTE-EEEEEEET-----TTCEEEEECHHHHH------C-
T ss_pred CCCCeeEEEEE---CC-chHHHHHHHHhCCCCCEEEEEEecCCCceEEEEecc-----CCCeEEeeHHHHhc------C-
Confidence 36899999998 66 889999999999999999999998777899999942 12799999999977 1
Q ss_pred CCceEEeeCChhHHhhcchhHHHHHHHHhcCCcccccc
Q 009605 304 NPHIALLPLHPDMRAKFNETAAWEYALSMDGKPYGYHN 341 (531)
Q Consensus 304 ~~~va~LPL~~e~RakFN~tAAwef~~~~eG~PYGyhN 341 (531)
+-+++++.+.+. +..=...+|.+|++++-|+||++..
T Consensus 65 ~~~~~V~r~~~~-~~~~~~~~~~~~a~~~~g~~Y~~~~ 101 (158)
T PF05708_consen 65 NEKIAVYRLKDP-LSEEQRQKAAEFAKSYIGKPYDFNF 101 (158)
T ss_dssp CCEEEEEEECCG-TTCHHHHHHHHHHHCCTTS-B-CC-
T ss_pred CceEEEEEECCC-CCHHHHHHHHHHHHHHcCCCccccc
Confidence 557999988887 2222455688899999999999753
No 2
>PRK11479 hypothetical protein; Provisional
Probab=99.15 E-value=2.1e-10 Score=115.00 Aligned_cols=179 Identities=20% Similarity=0.231 Sum_probs=117.0
Q ss_pred ccCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhhhh
Q 009605 218 TNVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWDFE 297 (531)
Q Consensus 218 ~~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~ 297 (531)
..|+.+++|+||+|.++ |. +.++..|++.|+|...|++|.+-| | .++|+.. .+|++.+.++|...
T Consensus 58 ~~Vs~~~LqpGDLVFfs---t~-t~~S~~Ik~~T~s~~SHVgIylGd--g--~vIEA~g------~GVri~pL~~~~~~- 122 (274)
T PRK11479 58 KEITAPDLKPGDLLFSS---SL-GVTSFGIRVFSTSSVSHVAIYLGE--N--NVAEATG------AGVQIVSLKKAIKH- 122 (274)
T ss_pred cccChhhCCCCCEEEEe---cC-CccccceecccCCCCcEEEEEecC--C--eEEEcCC------CCEEEEechhhhcc-
Confidence 36888999999999998 44 678999999999999999999863 4 3799832 36999999999762
Q ss_pred ccCCCCCCceEEe---eCChhHHhhcchhHHHHHHHHhcCCcccccceeeeeeecCCCCCCCCcchhhHHHHhhhhhc-c
Q 009605 298 VNKDDSNPHIALL---PLHPDMRAKFNETAAWEYALSMDGKPYGYHNMIFSWIDTRSGNYPPPLDAHLVASGMTMWNH-I 373 (531)
Q Consensus 298 ~~kd~a~~~va~L---PL~~e~RakFN~tAAwef~~~~eG~PYGyhN~iFsWIDT~~dNyPppLd~~~v~~v~s~~~~-~ 373 (531)
+-.|..+ .|.+|.+++ +.+|+.+..|+||.|.+.+.=. =-|+++ +
T Consensus 123 ------~~~I~a~Rv~~lt~e~~~k-----l~~fa~~~lGy~YN~~gI~~i~--------------------~y~~~~~~ 171 (274)
T PRK11479 123 ------SDKLFALRVPDLTPQQATK-----ITAFANKIKDSGYNYRGIVEFI--------------------PFMVTRQM 171 (274)
T ss_pred ------cceEEEEeCCCCCHHHHHH-----HHHHHHHhcCCCCCHHHHHHHH--------------------Hhhhhhhh
Confidence 2347777 555555554 8899999999999988743110 000000 0
Q ss_pred --chHHHHHHHHHHHhhhcCCCCCChhHHHHHHhhcCCChhhccCcccCCcccccCCCcchHHHHHHHHHHHcCCCCCCC
Q 009605 374 --QPAYAANMWNEALNKRLGTEGLDLPDILVETERRGTPFDELLTIPEQDDWIYSDGKSTSCVAFVLEMYKEAGLFDPIG 451 (531)
Q Consensus 374 --~P~~a~~mwneALNKRLgT~gL~l~~il~ea~krg~sf~~LlaiPEqD~W~Y~DG~S~~CsafV~~myKaAGlFg~l~ 451 (531)
.|-+ .+.+=+|+ |..+... .-|.- .+ .|..+++||.||+++|+++|+-- .
T Consensus 172 ~~~p~~-----~~~~r~~~------~~~la~i--~lg~~-~~------------~~~~~~fCSqfVaeaf~~aG~pi--~ 223 (274)
T PRK11479 172 CSLNPF-----SEDFRQQC------VSGLAKA--QLGSV-GE------------GDKKSWFCSEFVTEAFAKAGHPL--T 223 (274)
T ss_pred ccCCCC-----cHHHHHHH------HHhhhhh--hhccc-cc------------CCCCcEEHHHHHHHHHHHcCCcc--c
Confidence 0000 01111111 1100000 01110 11 46789999999999999999843 2
Q ss_pred Cceeecccccccceeeeecc
Q 009605 452 SSIQVTEFTIKDAYSLRFFE 471 (531)
Q Consensus 452 ~sIn~tEFTpkD~Y~l~iFe 471 (531)
.-+..-.||.|++.++==|
T Consensus 224 -~~~~~~v~P~Dl~~ir~~~ 242 (274)
T PRK11479 224 -LAQSGWISPADLLHMREGD 242 (274)
T ss_pred -cCCcCccCHHHHHhcccCC
Confidence 3455666999999887443
No 3
>PRK10030 hypothetical protein; Provisional
Probab=99.05 E-value=1.5e-09 Score=103.36 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=80.5
Q ss_pred ccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhhhhccCCC
Q 009605 223 EEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWDFEVNKDD 302 (531)
Q Consensus 223 ~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~~kd~ 302 (531)
.++|+||+|-.+ |+ +..+..|+.+|+|.-.|++|..+. +|+.+|+|+. .+|+.+|+++|.+- .
T Consensus 19 ~~l~~GDlif~~---g~-~~~s~aI~~~T~s~~SHVGIi~~~-~~~~~ViEAv-------~~V~~~pL~~Fl~~-----~ 81 (197)
T PRK10030 19 WQPQTGDIIFQI---SR-SSQSKAIQLATHSDYSHTGMIVKR-NKKPYVFEAV-------GPVKYTPLKQWIAH-----G 81 (197)
T ss_pred cCCCCCCEEEEe---CC-CcHhHHHhHhhCCCCceEEEEEEE-CCcEEEEEec-------CceEEEEHHHHhhc-----C
Confidence 388999999988 66 678999999999999999999984 7899999994 24999999999773 3
Q ss_pred CCCceEEeeCChhHHhhcchhHHHHHHHHhcCCcccc
Q 009605 303 SNPHIALLPLHPDMRAKFNETAAWEYALSMDGKPYGY 339 (531)
Q Consensus 303 a~~~va~LPL~~e~RakFN~tAAwef~~~~eG~PYGy 339 (531)
.+.++++..++..+... ...++.+|+.++-|+||++
T Consensus 82 ~~~~~~V~Rl~~~lt~~-~~~~li~~A~~~lGkpYD~ 117 (197)
T PRK10030 82 EKGKYVVRRLENGLSVE-QQQKLAQTAKRYLGKPYDF 117 (197)
T ss_pred ccCcEEEEEeCCCCCHH-HHHHHHHHHHHHcCCCCCc
Confidence 35688988877643332 1445788999999999984
No 4
>PRK11470 hypothetical protein; Provisional
Probab=98.73 E-value=1.1e-07 Score=91.97 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=79.4
Q ss_pred cccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhhhhccCC
Q 009605 222 VEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWDFEVNKD 301 (531)
Q Consensus 222 ~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~~kd 301 (531)
+.++|+||+|-++- |. ..+ .-|+.+|||-..|++|+.+-..++.+|+||.. .+++++|+++|++-
T Consensus 6 ~~~l~~GDLvF~~~--~~-~~~-~aI~~aT~s~~sHvGII~~~~~~~~~VlEA~~------~~vr~TpLs~fi~r----- 70 (200)
T PRK11470 6 PAEYEIGDIVFTCI--GA-ALF-GQISAASNCWSNHVGIIIGHNGEDFLVAESRV------PLSTVTTLSRFIKR----- 70 (200)
T ss_pred cCCCCCCCEEEEeC--Cc-chh-HHHHhccCCccceEEEEEEEcCCceEEEEecC------CceEEeEHHHHHhc-----
Confidence 46899999998872 22 333 45888999999999999954356889999953 23899999999874
Q ss_pred CCCCceEEeeCChhHHhhcchhHHHHHHHHhcCCcccc
Q 009605 302 DSNPHIALLPLHPDMRAKFNETAAWEYALSMDGKPYGY 339 (531)
Q Consensus 302 ~a~~~va~LPL~~e~RakFN~tAAwef~~~~eG~PYGy 339 (531)
..+..+++-.|+..+++. =..+|.+++.++-|+||++
T Consensus 71 ~~~g~i~v~Rl~~~l~~~-~~~~~~~~A~~~lGkpYD~ 107 (200)
T PRK11470 71 SANQRYAIKRLDAGLTEQ-QKQRIVEQVPSRLRKLYHT 107 (200)
T ss_pred CcCceEEEEEecCCCCHH-HHHHHHHHHHHHcCCCCCC
Confidence 457889999997655542 1455899999999999994
No 5
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=86.54 E-value=2.1 Score=40.39 Aligned_cols=54 Identities=22% Similarity=0.463 Sum_probs=38.8
Q ss_pred ccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhhh
Q 009605 223 EEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWDF 296 (531)
Q Consensus 223 ~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~ 296 (531)
.++|.||++..++- |. ++...|||+|+|.. +. +|.-. | +..+|.++..+..|.+
T Consensus 74 ~~~q~GDI~I~g~~-g~-----------S~G~~GHtgif~~~--~~--iIhc~---y-~~~g~~~~~~~~~~~~ 127 (145)
T PF05382_consen 74 WNLQRGDIFIWGRR-GN-----------SAGAGGHTGIFMDN--DT--IIHCN---Y-GANGIAINNYDWYWYY 127 (145)
T ss_pred ccccCCCEEEEcCC-CC-----------CCCCCCeEEEEeCC--Cc--EEEec---C-CCCCeEecCCCeeeec
Confidence 37899999997733 33 55678999999842 22 33332 3 8889999998888775
No 6
>PF05257 CHAP: CHAP domain; InterPro: IPR007921 The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain is a region between 110 and 140 amino acids that is found in proteins from bacteria, bacteriophages, archaea and eukaryotes of the Trypanosomidae family. Many of these proteins are uncharacterised, but it has been proposed that they may function mainly in peptidoglycan hydrolysis. The CHAP domain is found in a wide range of protein architectures; it is commonly associated with bacterial type SH3 domains and with several families of amidase domains. It has been suggested that CHAP domain containing proteins utilise a catalytic cysteine residue in a nucleophilic-attack mechanism [, ]. The CHAP domain contains two invariant residues, a cysteine and a histidine. These residues form part of the putative active site of CHAP domain containing proteins. Secondary structure predictions show that the CHAP domain belongs to the alpha + beta structural class, with the N-terminal half largely containing predicted alpha helices and the C-terminal half principally composed of predicted beta strands [, ]. Some proteins known to contain a CHAP domain are listed below: Bacterial and trypanosomal glutathionylspermidine amidases. A variety of bacterial autolysins. A Nocardia aerocolonigenes putative esterase. Streptococcus pneumoniae choline-binding protein D. Methanosarcina mazei protein MM2478, a putative chloride channel. Several phage-encoded peptidoglycan hydrolases. Cysteine peptidases belonging to MEROPS peptidase family C51 (D-alanyl-glycyl endopeptidase, clan CA). ; PDB: 2LRJ_A 2VPM_B 2VOB_B 2VPS_A 2K3A_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B ....
Probab=84.32 E-value=2.6 Score=36.65 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=32.0
Q ss_pred CcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEc-CCCcEEEEEcCCC
Q 009605 221 TVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRD-SEGKLWVGESGHE 277 (531)
Q Consensus 221 ~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd-~dG~L~v~ES~~~ 277 (531)
.....++||++.+. ..++...||+||+... .+|.+.++|....
T Consensus 59 ~~~~P~~Gdivv~~--------------~~~~~~~GHVaIV~~v~~~~~i~v~e~N~~ 102 (124)
T PF05257_consen 59 TGSTPQPGDIVVWD--------------SGSGGGYGHVAIVESVNDGGTITVIEQNWG 102 (124)
T ss_dssp ECS---TTEEEEEE--------------ECTTTTT-EEEEEEEE-TTSEEEEEECSST
T ss_pred cCcccccceEEEec--------------cCCCCCCCeEEEEEEECCCCEEEEEECCcC
Confidence 45677899999885 2457789999999997 6799999999864
No 7
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=83.97 E-value=1.2 Score=40.30 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=34.8
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhh
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWD 295 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~ 295 (531)
.++.+++|+||+|.+. . ..|..++|++|.+ + +|++ |-+.. + .++.+...+.||.
T Consensus 71 ~v~~~~~qpGDlvff~-~-------------~~~~~~~HvGIy~-G-~g~~--iHa~~----~-~~v~~~~~~~yw~ 124 (134)
T TIGR02219 71 PVPCDAAQPGDVLVFR-W-------------RPGAAAKHAAIAA-S-PTRF--IHAYD----G-AAVVESALVPWWR 124 (134)
T ss_pred ccchhcCCCCCEEEEe-e-------------CCCCCCcEEEEEe-C-CCcE--EEECC----C-CCEEEeCCcHHHH
Confidence 5677899999999875 2 2355689999888 2 5664 44322 1 1344555667775
No 8
>PF07313 DUF1460: Protein of unknown function (DUF1460); InterPro: IPR010846 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.; PDB: 2P1G_B 2IM9_A.
Probab=79.12 E-value=3.6 Score=40.95 Aligned_cols=58 Identities=17% Similarity=0.358 Sum_probs=42.3
Q ss_pred cccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhh
Q 009605 222 VEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWD 295 (531)
Q Consensus 222 ~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~ 295 (531)
.+.||+||+|+|..= . .|=-+.|++++.|..+| ++...+.. -.++..|.-.|+.||.+
T Consensus 151 ~~~i~~GDiI~i~t~--~-----------~GLDvsH~Giav~~~~~-l~l~hASs--~~~~~~vvd~pl~~Yl~ 208 (216)
T PF07313_consen 151 LSQIKNGDIIAIVTN--I-----------KGLDVSHVGIAVWKNDG-LHLRHASS--LHKKVVVVDEPLSEYLK 208 (216)
T ss_dssp HTTS-TT-EEEEEEE--C-----------TTECEEEEEEEEEETTE-EEEEEEET--TTTEEEEECCEHHHHHH
T ss_pred HhcCCCCCEEEEEeC--C-----------CCCceeeEEEEEEECCe-EEEEeCCC--CCCCcEEeccCHHHHHh
Confidence 478999999999832 1 55568999999997445 99887665 34445688889999876
No 9
>COG3863 Uncharacterized distant relative of cell wall-associated hydrolases [Function unknown]
Probab=77.07 E-value=5.4 Score=40.12 Aligned_cols=96 Identities=23% Similarity=0.392 Sum_probs=59.3
Q ss_pred ccCCcccCCCCCEEEEeeecccCCchhhHHHhhc------CcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchh
Q 009605 218 TNVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVT------GAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWD 291 (531)
Q Consensus 218 ~~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~t------Gs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~ 291 (531)
.+.++.-.||||.|.= ++--| +|- -|.| +.|-||.+|.. + .|+ ++||... ||++.+..
T Consensus 72 ~~~dr~v~~~gd~~~g-dyPTr-~g~----i~~t~~~~~~~~H~gHagmy~-~-a~~--~VEs~ps------GVr~v~~n 135 (231)
T COG3863 72 NNLDRSVLQPGDILLG-DYPTR-GGA----IWLTDTFGNIVGHWGHAGMYI-G-AGQ--MVESWPS------GVRVVSVN 135 (231)
T ss_pred hhhhhhhcCCcchhhc-cCCCC-cce----EEEEcccccccccccceEEEE-c-CCc--EEeeccC------ceEEecch
Confidence 4677778889987753 33223 221 2433 44668888655 2 354 5788764 47777766
Q ss_pred hhhhhhccCCCCCCceEEeeCChhHHhhcchhHHHHHHHHhcCCccccc
Q 009605 292 EWWDFEVNKDDSNPHIALLPLHPDMRAKFNETAAWEYALSMDGKPYGYH 340 (531)
Q Consensus 292 eW~~~~~~kd~a~~~va~LPL~~e~RakFN~tAAwef~~~~eG~PYGyh 340 (531)
-|.. +|+ +++-..+-..-+ .++|-+|+.+..|+||.|.
T Consensus 136 ~~~~----~dn----~iV~~vsts~~q---k~~AadWa~~kVG~PY~~n 173 (231)
T COG3863 136 MARN----ADN----VIVYRVSTSNDQ---KSKAADWALTKVGLPYDYN 173 (231)
T ss_pred hhhc----ccc----eEEEEEecchhh---hHHHHHHHHhccCCcccce
Confidence 6633 333 444333332222 3789999999999999984
No 10
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=65.29 E-value=6.2 Score=33.29 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=27.1
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcC
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESG 275 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~ 275 (531)
.++.++.++||+|.+.. +..+.|++|.+ .+|+ +++++
T Consensus 46 ~~~~~~~~pGDlif~~~----------------~~~~~Hvgiy~--g~~~--~iha~ 82 (105)
T PF00877_consen 46 RVPISELQPGDLIFFKG----------------GGGISHVGIYL--GDGK--FIHAS 82 (105)
T ss_dssp HEEGGG-TTTEEEEEEG----------------TGGEEEEEEEE--ETTE--EEEEE
T ss_pred ccchhcCCcccEEEEeC----------------CccCCEeEEEE--eCCe--EEEeC
Confidence 36789999999999981 67899999998 2343 45554
No 11
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=54.55 E-value=23 Score=34.66 Aligned_cols=52 Identities=13% Similarity=0.400 Sum_probs=31.9
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchh-hhhh
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWD-EWWD 295 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~-eW~~ 295 (531)
.|+.+++++||.+.+. +|+..+|++|.+= +|+ +|.+... .+|.+..++ .||+
T Consensus 123 ~V~~~~lqpGDLVfF~----------------~~~~~~HVGIyiG--ng~--~IHAs~~-----~gV~i~~l~~~yw~ 175 (190)
T PRK10838 123 SVSRSKLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHASTS-----SGVIISSMNEPYWK 175 (190)
T ss_pred CcccCCCCCCcEEEEC----------------CCCCCCEEEEEec--CCE--EEEeCCC-----CCEEEEeCCchHhH
Confidence 3556899999998775 2334689999884 565 3444331 235555554 4443
No 12
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=49.37 E-value=27 Score=23.92 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=14.0
Q ss_pred EEEEEcCCCcEEEEEcCCC
Q 009605 259 AVCLRDSEGKLWVGESGHE 277 (531)
Q Consensus 259 av~Lrd~dG~L~v~ES~~~ 277 (531)
.|++ +++|++||.|++..
T Consensus 6 gvav-~~~g~i~VaD~~n~ 23 (28)
T PF01436_consen 6 GVAV-DSDGNIYVADSGNH 23 (28)
T ss_dssp EEEE-ETTSEEEEEECCCT
T ss_pred EEEE-eCCCCEEEEECCCC
Confidence 4566 47999999998763
No 13
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=42.32 E-value=42 Score=37.47 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=27.4
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCC
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGH 276 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~ 276 (531)
.++.+++++||+|.+. +|+..+|.+|.+- +|+ +|.+.+
T Consensus 421 ~Vs~selqpGDLVFF~----------------~~~~~~HVGIYiG--nG~--~IHA~~ 458 (481)
T PRK13914 421 RISESQAKPGDLVFFD----------------YGSGISHVGIYVG--NGQ--MINAQD 458 (481)
T ss_pred ccccccCCCCCEEEeC----------------CCCCCCEEEEEeC--CCE--EEEcCC
Confidence 5677899999999885 1345789999983 566 345543
No 14
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.96 E-value=16 Score=38.85 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=74.4
Q ss_pred Eeecccchhh--HHhhhcCEEEEEeechh--hhhhhhhhcccccccC-Cccc----ccccHHHHHHhcCCceeecCCC--
Q 009605 147 FNEWEGKLEY--EYVKNKGVSIFLMQAGM--LGTLEALWDVFPLFTN-TGWG----ENSNIGFLKKHMGASFEQRPEP-- 215 (531)
Q Consensus 147 ~~~w~~~~e~--e~ik~~Gv~vFlm~~G~--~gtl~sl~d~~plF~n-t~wg----e~~Nl~FL~~~mG~~fe~R~~~-- 215 (531)
|.+++=++-+ -.+++.|+-||.=..|- --|+-+..+- .| +--| ...=++|+.+|-+--+..|+.-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~y----RN~~s~gHIiTIEDPIEfih~h~~CIvTQREvGvD 185 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGY----RNKNSTGHIITIEDPIEFIHKHKRCIVTQREVGVD 185 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcc----cccCCCCceEEecChHHHHhcccceeEEeeeeccc
Confidence 3344433333 35678999998755543 3344333322 22 1112 3556899999999999999843
Q ss_pred ---ccccCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEE
Q 009605 216 ---WFTNVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLR 263 (531)
Q Consensus 216 ---~v~~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lr 263 (531)
|-+.+.-..=|+-|+|.|+.+|-| |+++-=.+=|-.||-.||-.
T Consensus 186 Tesw~~AlkNtlRQapDvI~IGEvRsr----etMeyAi~fAeTGHLcmaTL 232 (375)
T COG5008 186 TESWEVALKNTLRQAPDVILIGEVRSR----ETMEYAIQFAETGHLCMATL 232 (375)
T ss_pred hHHHHHHHHHHHhcCCCeEEEeecccH----hHHHHHHHHHhcCceEEEEe
Confidence 333344466799999999999999 99998888899999887765
No 15
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=37.81 E-value=26 Score=35.87 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=24.9
Q ss_pred CcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhh
Q 009605 254 YAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWD 295 (531)
Q Consensus 254 ~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~ 295 (531)
++||++|.+.+.|| ++.+|=.. .++--|.+++..|-+
T Consensus 185 FvGH~GVLv~~~dg-~LFiEKla----f~ePYQa~kF~~~~e 221 (250)
T PF14133_consen 185 FVGHTGVLVPTKDG-YLFIEKLA----FEEPYQATKFNNKEE 221 (250)
T ss_pred EeeeEEEEEEcCCc-EEEEEeeC----CCCCceeEEeCCHHH
Confidence 46899999988667 88888654 344455555555533
No 16
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=35.34 E-value=78 Score=29.05 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=20.9
Q ss_pred ccccCCCcchHHHHHHHHHHHcCCCCCC
Q 009605 423 WIYSDGKSTSCVAFVLEMYKEAGLFDPI 450 (531)
Q Consensus 423 W~Y~DG~S~~CsafV~~myKaAGlFg~l 450 (531)
|-..|.-.+ ||+||--+|+++|+-.+-
T Consensus 30 ~~~~~~~~W-Cs~FV~~~~~qaG~~~~r 56 (129)
T TIGR02594 30 VRTDDETPW-CGSFVNMCLEKTGRKGTG 56 (129)
T ss_pred ccCCCCCcH-HHHHHHHHHHHcCCCCCC
Confidence 333456555 999999999999997654
No 17
>PRK15231 fimbrial adhesin protein SefD; Provisional
Probab=34.66 E-value=38 Score=32.74 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=68.0
Q ss_pred hhhcCEEEEEeechhhhhhhhhhcccccccCCcccccccHHHHHHhcCCceeecCCCccccCCcccCCCCCEEEEeeecc
Q 009605 159 VKNKGVSIFLMQAGMLGTLEALWDVFPLFTNTGWGENSNIGFLKKHMGASFEQRPEPWFTNVTVEEIHSGDFLAVSKIRG 238 (531)
Q Consensus 159 ik~~Gv~vFlm~~G~~gtl~sl~d~~plF~nt~wge~~Nl~FL~~~mG~~fe~R~~~~v~~i~~~dI~sGDflaiskirG 238 (531)
|-+.=++||++-.|...++...-++ .|-++ +.|| .=-+.+++|..||-+||--
T Consensus 10 ~~~~~~~~~~~~~~~~Ss~sqA~el-~L~~~-------------~~~~-------------~~~~~l~dg~~laTGri~c 62 (150)
T PRK15231 10 IPKFIVSVFLIVTGFFSSTIKAQEL-KLMIK-------------INEA-------------VFYDRITSNKIIGTGHLFN 62 (150)
T ss_pred cccceeeEeeEeehhhhhhhhceee-EEEee-------------cccc-------------chhhhccCCcEEeeeeEEe
Confidence 4556689999999998887544433 11111 1111 0126789999999999988
Q ss_pred cCCchhhHHHhhc----CcCcceeEEE-EEcCCCcEEEEEcCCCCcC--ccceeeec
Q 009605 239 RWGGFETLEKWVT----GAYAGHTAVC-LRDSEGKLWVGESGHENDE--GQDIIAIL 288 (531)
Q Consensus 239 r~~Gf~~l~kw~t----Gs~aGHtav~-Lrd~dG~L~v~ES~~~~~~--g~~~I~~~ 288 (531)
| +||- +.||.. |..+||--|- .+|+.-||+|-=.|.+|-. +.+||.+.
T Consensus 63 r-egfh-iwmns~~~q~gg~P~~YIvqGk~dsqh~LrVRlgGeGWqPd~~g~Giv~~ 117 (150)
T PRK15231 63 R-EGKK-ILISSSLEKIKNTPGAYIIRGQNNSAHKLRIRIGGEDWQPDNSGIGMVSH 117 (150)
T ss_pred c-CCeE-EEEecchhhcCCCccEEEEECCCCCcceEEEEecCCCccCCCCCCceEee
Confidence 8 7998 888877 7788888766 4577789998766666533 33444443
No 18
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=29.39 E-value=39 Score=32.06 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCCc-chHHHHHHHHHHHcCCCCCCCCceeecc
Q 009605 427 DGKS-TSCVAFVLEMYKEAGLFDPIGSSIQVTE 458 (531)
Q Consensus 427 DG~S-~~CsafV~~myKaAGlFg~l~~sIn~tE 458 (531)
.|++ +-||.||..++|+||+.- ..++--||
T Consensus 24 ~G~~s~DCSs~V~~ALr~aG~~~--~g~~~nT~ 54 (145)
T PF05382_consen 24 NGPDSYDCSSFVYQALRAAGFKI--PGSAGNTE 54 (145)
T ss_pred CCCCcCchHHHHHHHHHHcCCCC--CCCccCHH
Confidence 4444 799999999999999963 23344444
No 19
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=29.37 E-value=56 Score=24.21 Aligned_cols=16 Identities=50% Similarity=0.781 Sum_probs=13.2
Q ss_pred CcceeEEEEEcCCCcEEEE
Q 009605 254 YAGHTAVCLRDSEGKLWVG 272 (531)
Q Consensus 254 ~aGHtav~Lrd~dG~L~v~ 272 (531)
+.||+++++ ++|+||+
T Consensus 2 r~~hs~~~~---~~kiyv~ 17 (49)
T PF07646_consen 2 RYGHSAVVL---DGKIYVF 17 (49)
T ss_pred ccceEEEEE---CCEEEEE
Confidence 579999876 7899976
No 20
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=28.45 E-value=68 Score=32.40 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhhhcCCCCCChhHHHHHHhhcCCChhhccCcccCCcccccCCCcchHHHHHHHHHHHcCCCCCCCCce
Q 009605 375 PAYAANMWNEALNKRLGTEGLDLPDILVETERRGTPFDELLTIPEQDDWIYSDGKSTSCVAFVLEMYKEAGLFDPIGSSI 454 (531)
Q Consensus 375 P~~a~~mwneALNKRLgT~gL~l~~il~ea~krg~sf~~LlaiPEqD~W~Y~DG~S~~CsafV~~myKaAGlFg~l~~sI 454 (531)
|+....-+.+.| |||||.-+|+..+ +.... ..|-.+. .=.++-+|++|++. .|
T Consensus 95 ~~~i~~~~~~SL-~rL~td~iDl~~l------H~~~~----~~~~~e~------------~~aL~~l~~~G~ir----~i 147 (317)
T TIGR01293 95 RKHIIEGLKASL-ERLQLEYVDIVFA------NRPDP----NTPMEET------------VRAMTYVINQGMAM----YW 147 (317)
T ss_pred HHHHHHHHHHHH-HHhCCCcEeEEEe------ccCCC----CCCHHHH------------HHHHHHHHHcCCee----EE
Confidence 444444555555 8999999999843 22210 0110000 12455678888888 56
Q ss_pred eecccccccc
Q 009605 455 QVTEFTIKDA 464 (531)
Q Consensus 455 n~tEFTpkD~ 464 (531)
-++.|++.++
T Consensus 148 GvSn~~~~~l 157 (317)
T TIGR01293 148 GTSRWSSMEI 157 (317)
T ss_pred EecCCCHHHH
Confidence 6777776664
No 21
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=28.14 E-value=2.4e+02 Score=24.80 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=49.6
Q ss_pred cccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEE-EEEcCC----------CCcCccceeeecch
Q 009605 222 VEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLW-VGESGH----------ENDEGQDIIAILPW 290 (531)
Q Consensus 222 ~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~-v~ES~~----------~~~~g~~~I~~~~w 290 (531)
...+++||.|.+-|. ..-|.++.+= ||+.. ....+. .....+..|...++
T Consensus 4 ~~~~~~GD~I~~~r~-----------------~y~H~gIYvG--~~~ViH~~~~~~~~~~~~~~~~~~~~~~~~V~~~~l 64 (125)
T PF04970_consen 4 KKRLKPGDHIEVPRG-----------------LYEHWGIYVG--DGEVIHFSGPGEISVSNRSSICGFSKKKAEVKKDSL 64 (125)
T ss_dssp --S--TT-EEEEEET-----------------TEEEEEEEEE--TTEEEEEE-S-SSS-SSSSGGGGT--S-EEEEEEEH
T ss_pred ccCCCCCCEEEEecC-----------------CccEEEEEec--CCeEEEecccccccccccccccceecCCCEEEEEEh
Confidence 456899999999932 5679998885 46544 221111 11234677888899
Q ss_pred hhhhhhhccCCCCCCceEEeeCChhHHhhcchhHHHHHHHHhcCCccccc
Q 009605 291 DEWWDFEVNKDDSNPHIALLPLHPDMRAKFNETAAWEYALSMDGKPYGYH 340 (531)
Q Consensus 291 ~eW~~~~~~kd~a~~~va~LPL~~e~RakFN~tAAwef~~~~eG~PYGyh 340 (531)
+++.. +. .+-+....+.....+....+.+-|+++-|+...|+
T Consensus 65 ~~~~~------~~--~~~v~~~~~~~~~~~~~~~iv~rA~~~lg~~~~Y~ 106 (125)
T PF04970_consen 65 EEFAQ------GR--KVRVNNYLDHRYKPFPPEEIVERAESRLGKEFEYN 106 (125)
T ss_dssp HHHHT------TS--EEEE--GGGGTS--S-HHHHHHHHHHTTT-EESS-
T ss_pred HHhcC------CC--EEEEEecCCccCCCCCHHHHHHHHHHHHcCCCccC
Confidence 99854 22 24444443344455677778888999988655665
No 22
>COG0791 Spr Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]
Probab=26.96 E-value=1.6e+02 Score=27.62 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=30.5
Q ss_pred cCCceeecCCC-----ccccCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEE
Q 009605 205 MGASFEQRPEP-----WFTNVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLR 263 (531)
Q Consensus 205 mG~~fe~R~~~-----~v~~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lr 263 (531)
+|..+ +|..+ .-..+..+++++||+|-+. .+ .++.+.|.++-+-
T Consensus 115 ~gi~l-pr~~~~~q~~~g~~v~~~~~~~GDlvff~------~~--------~~~~~~Hvgiy~g 163 (197)
T COG0791 115 VGIQL-PRTTRADQWNVGTAVDDSDLQPGDLVFFN------TG--------GGSSANHVGIYLG 163 (197)
T ss_pred cCccC-CCCccHHHHhccCccChhhCCCCCEEEEe------cC--------CCCCCCeEEEEec
Confidence 66666 55541 1146677889999999988 22 4667889998875
No 23
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=25.66 E-value=1.2e+02 Score=19.70 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=17.3
Q ss_pred CCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEE
Q 009605 225 IHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLR 263 (531)
Q Consensus 225 I~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lr 263 (531)
+++||.+.|. .|.+.|+.+..+.
T Consensus 2 ~~~G~~V~I~----------------~G~~~g~~g~i~~ 24 (28)
T smart00739 2 FEVGDTVRVI----------------AGPFKGKVGKVLE 24 (28)
T ss_pred CCCCCEEEEe----------------ECCCCCcEEEEEE
Confidence 5688888887 5777888886664
No 24
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=24.84 E-value=49 Score=29.90 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=17.0
Q ss_pred hc-chhHHHHHHHHhcCCccc
Q 009605 319 KF-NETAAWEYALSMDGKPYG 338 (531)
Q Consensus 319 kF-N~tAAwef~~~~eG~PYG 338 (531)
|| +..+|-+|....+||||-
T Consensus 60 kF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 60 KFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EECCHHHHHHHHHHhCCCccC
Confidence 45 677888999999999984
No 25
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=24.14 E-value=70 Score=21.37 Aligned_cols=12 Identities=50% Similarity=1.226 Sum_probs=8.8
Q ss_pred EEEcCCCcEEEE
Q 009605 261 CLRDSEGKLWVG 272 (531)
Q Consensus 261 ~Lrd~dG~L~v~ 272 (531)
.+.|.+|.|||+
T Consensus 10 i~~D~~G~lWig 21 (24)
T PF07494_consen 10 IYEDSDGNLWIG 21 (24)
T ss_dssp EEE-TTSCEEEE
T ss_pred EEEcCCcCEEEE
Confidence 455888999997
No 26
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=23.84 E-value=1.7e+02 Score=26.92 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=28.3
Q ss_pred cCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcC-C-CcEEEEEcCCCC
Q 009605 224 EIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDS-E-GKLWVGESGHEN 278 (531)
Q Consensus 224 dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~-d-G~L~v~ES~~~~ 278 (531)
+-++||++.+. | +| .||+++++... + |.++++|--.++
T Consensus 73 ~p~~GDiv~f~----~-~~------------~~HVGi~~g~~~~~g~i~~lgGNq~~ 112 (129)
T TIGR02594 73 KPAYGCIAVKR----R-GG------------GGHVGFVVGKDKQTGTIIVLGGNQGD 112 (129)
T ss_pred CCCccEEEEEE----C-CC------------CCEEEEEEeEcCCCCEEEEeeCCCCC
Confidence 56999999885 1 21 68999999743 2 689999976654
No 27
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=21.32 E-value=2.4e+02 Score=31.00 Aligned_cols=115 Identities=17% Similarity=0.374 Sum_probs=69.9
Q ss_pred ccccCCcccC-CCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcC--CC------CcCccceee
Q 009605 216 WFTNVTVEEI-HSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESG--HE------NDEGQDIIA 286 (531)
Q Consensus 216 ~v~~i~~~dI-~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~--~~------~~~g~~~I~ 286 (531)
|+.=--+++| ++|||+.+. | .|...|+.|+.||++.+..-. |. -..|....-
T Consensus 39 W~~v~h~selp~~GDy~t~~-i------------------g~~pviv~R~~dG~i~a~~N~C~HRGa~L~~~~~Gn~~~~ 99 (438)
T TIGR03228 39 WIYACHESELPNNHDFVTVR-A------------------GRQPMIVTRDGKGELHALVNACQHRGATLTRVGKGNQSTF 99 (438)
T ss_pred CEEEEEHHHCCCCCCeEEEE-E------------------CCeEEEEEECCCCCEEEEcccCCCCCCccccCCccccCEE
Confidence 5433335666 569999865 3 235677789999999976531 11 124444556
Q ss_pred ecchhhhhhhhccCCCCCCceEEeeCChhHHhhcchhHHHHHHHHhcCCcccccceeeeeeecCCCCCCCCcchhh
Q 009605 287 ILPWDEWWDFEVNKDDSNPHIALLPLHPDMRAKFNETAAWEYALSMDGKPYGYHNMIFSWIDTRSGNYPPPLDAHL 362 (531)
Q Consensus 287 ~~~w~eW~~~~~~kd~a~~~va~LPL~~e~RakFN~tAAwef~~~~eG~PYGyhN~iFsWIDT~~dNyPppLd~~~ 362 (531)
+=||-.| .| +.+++..-+|...+....|+.. .+-- ++. +=--|+.|||.+.|... |+||+..+
T Consensus 100 ~CPYHgW-~y-----~~dG~L~~vp~~~~y~~~fd~~-~~~L-~~~--rv~~y~GfIFv~l~~~a---~~~l~e~l 162 (438)
T TIGR03228 100 TCPFHAW-CY-----KSDGRLVKVKAPGEYCEGFDKA-TRGL-KKA--RIASYRGFVFVSLDVAA---TDSLEDFL 162 (438)
T ss_pred EcCCCCC-cc-----cCCCceeecCcccccCCCCChh-hCCC-cce--eEEEECCEEEEEeCCCC---CCCHHHHh
Confidence 7799998 23 5577788888766665666642 1110 111 11235689999999633 45677654
No 28
>KOG4456 consensus Inner centromere protein (INCENP), C-terminal domain [Cell cycle control, cell division, chromosome partitioning]
Probab=21.01 E-value=1.6e+02 Score=28.08 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=42.9
Q ss_pred CCcccccceeeeeeecCCCCCCC-Ccch----hhHHHHhhhhhccchHHHHHHHHHHHhhhcCCCCCChhHHHHHH----
Q 009605 334 GKPYGYHNMIFSWIDTRSGNYPP-PLDA----HLVASGMTMWNHIQPAYAANMWNEALNKRLGTEGLDLPDILVET---- 404 (531)
Q Consensus 334 G~PYGyhN~iFsWIDT~~dNyPp-pLd~----~~v~~v~s~~~~~~P~~a~~mwneALNKRLgT~gL~l~~il~ea---- 404 (531)
-++|||.++|=|=--|-++--|. |.+. +.+.-.+-+-..=-|...+.++.- +++ +||.||+.++
T Consensus 41 ~n~~~~~~dlnsDdstDdE~hpRkp~PtWar~~v~~eai~~qa~~pp~~v~~Ff~~-----~pk--pdLkeIF~~~~p~~ 113 (134)
T KOG4456|consen 41 ANDYGVESDLNSDDSTDDEKHPRKPFPTWARDMVIVEAIEEQAKNPPFNVNTFFGS-----MPK--PDLKEIFGEMVPSK 113 (134)
T ss_pred CCccchhhhcccccccccccCCCCCCchhhhhchHHHHHHHHhhCCchHHHHHhcc-----cCC--cCHHHHHHhhhhhh
Confidence 57899999998866665555443 3332 333333333333445555555543 233 8999999887
Q ss_pred hhcCCC
Q 009605 405 ERRGTP 410 (531)
Q Consensus 405 ~krg~s 410 (531)
.|||.|
T Consensus 114 ~KR~SS 119 (134)
T KOG4456|consen 114 KKRGSS 119 (134)
T ss_pred hhcccc
Confidence 678887
No 29
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=20.29 E-value=1.2e+02 Score=24.95 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=21.4
Q ss_pred CCChhHHHHHHhhcCCChhhccCcccCCcccccCCCcchHHHHHHH
Q 009605 394 GLDLPDILVETERRGTPFDELLTIPEQDDWIYSDGKSTSCVAFVLE 439 (531)
Q Consensus 394 gL~l~~il~ea~krg~sf~~LlaiPEqD~W~Y~DG~S~~CsafV~~ 439 (531)
-|+++|.++|+.++|+.+++ .|.+..-|-.|==+
T Consensus 15 Rl~k~eMiaem~~~G~~y~~------------~~tK~~Lvk~fkKq 48 (54)
T PF09124_consen 15 RLTKPEMIAEMDSYGFEYNE------------KDTKAQLVKIFKKQ 48 (54)
T ss_dssp TS-HHHHHHHHHHTT----T------------TS-HHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhCCcCCc------------cccHHHHHHHHHHH
Confidence 46899999999999999999 77776666555433
Done!