Query 009605
Match_columns 531
No_of_seqs 55 out of 57
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 08:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kw0_A Cysteine peptidase; str 99.4 9.9E-13 3.4E-17 124.2 12.8 161 222-469 37-206 (214)
2 2if6_A Hypothetical protein YI 99.3 1.5E-11 5.1E-16 112.2 11.1 101 221-339 1-101 (186)
3 4h4j_A Hypothetical protein; P 89.3 0.5 1.7E-05 46.0 5.9 72 222-313 168-239 (240)
4 2jyx_A Lipoprotein SPR; soluti 79.7 2 6.7E-05 37.6 4.6 52 219-295 62-114 (136)
5 2p1g_A Putative xylanase; stru 76.7 4.5 0.00015 39.9 6.6 69 223-313 170-240 (249)
6 2im9_A Hypothetical protein; s 74.4 5.3 0.00018 40.9 6.7 63 223-296 239-302 (333)
7 2k1g_A Lipoprotein SPR; soluti 61.4 5.4 0.00019 35.4 3.2 48 219-291 62-109 (135)
8 2hbw_A NLP/P60 protein; NLP/P6 53.5 22 0.00074 34.1 6.2 53 219-292 155-207 (235)
9 4hpe_A Putative cell WALL hydr 39.2 14 0.00047 36.6 2.4 40 219-274 243-282 (308)
10 3gt2_A Putative uncharacterize 37.3 50 0.0017 28.8 5.5 31 219-268 84-114 (142)
11 3jxo_A TRKA-N domain protein; 31.8 38 0.0013 26.2 3.4 28 222-252 58-85 (86)
12 3pbi_A Invasion protein; pepti 31.4 57 0.0019 31.1 5.2 51 219-294 153-203 (214)
13 4fdy_A Similar to lipoprotein, 31.2 28 0.00097 34.8 3.2 40 219-274 247-286 (313)
14 3a2z_A Bifunctional glutathion 31.1 53 0.0018 31.1 4.8 43 222-277 109-151 (197)
15 3ne0_A Resuscitation promoting 27.1 73 0.0025 30.4 5.1 37 219-276 153-189 (214)
16 3h41_A NLP/P60 family protein; 25.1 51 0.0018 32.2 3.8 41 218-275 243-283 (311)
17 3npf_A Putative dipeptidyl-pep 24.9 68 0.0023 30.9 4.5 41 221-275 217-257 (306)
18 2jrn_A CHAP domain protein; mo 23.4 2.4E+02 0.0081 26.4 7.6 24 254-277 106-130 (163)
No 1
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=99.42 E-value=9.9e-13 Score=124.22 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=115.5
Q ss_pred cccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhhhhc-cC
Q 009605 222 VEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWDFEV-NK 300 (531)
Q Consensus 222 ~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~-~k 300 (531)
++++++||+|.+. |+ +.++.+|+++|+|..+|++|++.+ +++++|+|+.. ..||++.++++|.+-.. ..
T Consensus 37 ~~~l~~GDlif~~---~~-~~~s~~I~~~T~s~~sHvgI~~~~-~~~~~vieA~~-----~~GV~~~~L~~fl~~~~~~~ 106 (214)
T 3kw0_A 37 INVLKTGDIFLCS---GN-YLVSKLIKKVSESMFSHTGIIVKW-GEHTLIMESVE-----DDGVRIVPLEHYIKNYENSN 106 (214)
T ss_dssp TTTCCTTCEEEEE---EC-SHHHHHHHHHTTSSCCEEEEEEEE-TTEEEEEEEET-----TTEEEEEETHHHHHCGGGSS
T ss_pred HhhCCCCCEEEEe---CC-CcHHHHHHHhcCCCCcEEEEEEec-CCceEEEEecC-----CCCEEEecHHHHHHHhhccc
Confidence 5799999999997 77 889999999999999999999986 68999999964 36799999999986321 01
Q ss_pred CCCCCceEEeeC--------ChhHHhhcchhHHHHHHHHhcCCcccccceeeeeeecCCCCCCCCcchhhHHHHhhhhhc
Q 009605 301 DDSNPHIALLPL--------HPDMRAKFNETAAWEYALSMDGKPYGYHNMIFSWIDTRSGNYPPPLDAHLVASGMTMWNH 372 (531)
Q Consensus 301 d~a~~~va~LPL--------~~e~RakFN~tAAwef~~~~eG~PYGyhN~iFsWIDT~~dNyPppLd~~~v~~v~s~~~~ 372 (531)
+.++..|++..| .++.+ .++.+|+.++.|+||++.+++. +.
T Consensus 107 ~~y~~~i~V~Rl~~~~~v~lt~~~~-----~~l~~~a~~~lGkpYd~~~~~~------------------------l~-- 155 (214)
T 3kw0_A 107 NRYNGSLFIARHELLQNVNDDSEMI-----RNLIKVGFSLLNSGYDKNEIAQ------------------------IV-- 155 (214)
T ss_dssp SCCSEEEEEEEEGGGTTSCTTSHHH-----HHHHHHHHHHCCSCCCHHHHHH------------------------HH--
T ss_pred ccccCceEEEEeccccccCCCHHHH-----HHHHHHHHHhcCCCCCcHHHHH------------------------HH--
Confidence 234456888755 44444 4589999999999999765210 00
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCChhHHHHHHhhcCCChhhccCcccCCcccccCCCcchHHHHHHHHHHHcCCCCCCCC
Q 009605 373 IQPAYAANMWNEALNKRLGTEGLDLPDILVETERRGTPFDELLTIPEQDDWIYSDGKSTSCVAFVLEMYKEAGLFDPIGS 452 (531)
Q Consensus 373 ~~P~~a~~mwneALNKRLgT~gL~l~~il~ea~krg~sf~~LlaiPEqD~W~Y~DG~S~~CsafV~~myKaAGlFg~l~~ 452 (531)
.|. + .|..+ -.+...+.||.||+++|+++|+--.
T Consensus 156 ---------------~r~----------~-----~~~~~-------------~~~~~~~~CSelv~~a~~~~g~~~~--- 189 (214)
T 3kw0_A 156 ---------------ARI----------G-----LGIGR-------------HEDNNEYICSEFVNECFKKIGVEFL--- 189 (214)
T ss_dssp ---------------HHH----------H-----HTCCC-------------CSSCCCCCHHHHHHHHHHTTTCCCC---
T ss_pred ---------------Hhh----------h-----hcccc-------------cCCCCcEEeHHHHHHHHHHcCCCcc---
Confidence 010 0 12221 1367889999999999999998542
Q ss_pred ceeecccccccceeeee
Q 009605 453 SIQVTEFTIKDAYSLRF 469 (531)
Q Consensus 453 sIn~tEFTpkD~Y~l~i 469 (531)
.-+..-+||.|..+-.-
T Consensus 190 ~~~~~~v~P~dl~~s~~ 206 (214)
T 3kw0_A 190 TDSEGFIFPEHIAADHH 206 (214)
T ss_dssp -----CCCHHHHHHCTT
T ss_pred CCCCCEEecHHHhCCCC
Confidence 22566799999875443
No 2
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=99.28 E-value=1.5e-11 Score=112.17 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=80.3
Q ss_pred CcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhhhhccC
Q 009605 221 TVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWDFEVNK 300 (531)
Q Consensus 221 ~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~~k 300 (531)
+++++|+||+|.+. |+ +.++.+|+.+|++..+|++|.+.+ +|+.+|+|+.. +|++.++++|.+.
T Consensus 1 ~~~~l~~GDlvf~~---~~-~~~s~~I~~~t~~~~sHvgI~~~~-~~~~~viea~~-------gV~~~~l~~f~~~---- 64 (186)
T 2if6_A 1 SLWQPQTGDIIFQI---SR-SSQSKAIQLATHSDYSHTGMLVMR-NKKPYVFEAVG-------PVKYTPLKQWIAH---- 64 (186)
T ss_dssp --CCCCTTCEEEEC---CC-STTHHHHHHHHTSSCCEEEEEEEE-TTEEEEEEESS-------SEEEEEHHHHHHT----
T ss_pred CcccCCCCCEEEEE---cC-CchHHHHHHHcCCCCceEEEEEEe-CCcEEEEEeCC-------CeEEEEHHHHHhh----
Confidence 46789999999886 66 788999999999999999999975 68899999972 5999999999773
Q ss_pred CCCCCceEEeeCChhHHhhcchhHHHHHHHHhcCCcccc
Q 009605 301 DDSNPHIALLPLHPDMRAKFNETAAWEYALSMDGKPYGY 339 (531)
Q Consensus 301 d~a~~~va~LPL~~e~RakFN~tAAwef~~~~eG~PYGy 339 (531)
..+-++++.+|+.++.+. ...++.+++.++.|+||+|
T Consensus 65 -~~~~~~~v~Rl~~~ls~~-~~~~~~~~a~~~~G~pY~~ 101 (186)
T 2if6_A 65 -GEKGKYVVRRVEGGLSVE-QQQKLAQTAKRYLGKPYDF 101 (186)
T ss_dssp -SGGGCEEEEEETTCCCHH-HHHHHHHHHGGGTTCCBCT
T ss_pred -ccCCcEEEEEeCCCCCHH-HHHHHHHHHHHHcCCcCCc
Confidence 123478999887533222 2456888999999999997
No 3
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=89.26 E-value=0.5 Score=46.03 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=53.1
Q ss_pred cccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhhhhccCC
Q 009605 222 VEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWDFEVNKD 301 (531)
Q Consensus 222 ~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~~~~kd 301 (531)
.+.||+||+|+|..= ..|--+.|+++++|. +|+++...... ..++-.|...|+.|+.+. .
T Consensus 168 ~~~l~~GDiIai~t~-------------~~GLDvsH~Giai~~-~~~l~l~hASS--~~~~vvv~d~pl~~Yl~~----~ 227 (240)
T 4h4j_A 168 LPWIKDGDIIAITTN-------------TPGLDVAHMGIAFYA-DNKLLLVHASS--TDKKVVVSKVPLSQMLKD----N 227 (240)
T ss_dssp CTTSCTTCEEEEEEC-------------STTCSEEEEEEEEEE-TTEEEEEEEET--TTTEEEECSSCHHHHHHH----C
T ss_pred HhhCCCCcEEEEEec-------------CCCceEEEEEEEEEE-CCeEEEEEcCC--CCCceEEcCccHHHHHhh----C
Confidence 467999999999832 257788999999995 88899988665 445566667899999872 2
Q ss_pred CCCCceEEeeCC
Q 009605 302 DSNPHIALLPLH 313 (531)
Q Consensus 302 ~a~~~va~LPL~ 313 (531)
.+.+-|.++.++
T Consensus 228 ~~~~GI~V~R~k 239 (240)
T 4h4j_A 228 NKWTGIRVLRMK 239 (240)
T ss_dssp TTEEEEEEEEEC
T ss_pred CCCCCeEEEEeC
Confidence 344557666543
No 4
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=79.71 E-value=2 Score=37.65 Aligned_cols=52 Identities=15% Similarity=0.424 Sum_probs=35.2
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhh-hhh
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDE-WWD 295 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~e-W~~ 295 (531)
.++.+++++||+|.+. +|+.++|.+|.+= +|+ +|++.. ..+|++.+.++ ||.
T Consensus 62 ~v~~~~l~pGDLvff~----------------~~~~~~HVgIy~G--~g~--~IHa~~-----~~gV~i~~l~~~yw~ 114 (136)
T 2jyx_A 62 SVSRSNLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHAST-----SSGVIISSMNEPYWK 114 (136)
T ss_dssp ECCTTTCCTTEEEEEE----------------CSSSSEEEEEEEE--TTE--EEEEET-----TTEEEEEETTSHHHH
T ss_pred EcchHhCCCCCEEEEC----------------CCCCCCEEEEEEc--CCE--EEEECC-----CCCEEEEECCchHhH
Confidence 5677899999999886 1234789999884 564 555543 23577777765 444
No 5
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=76.66 E-value=4.5 Score=39.89 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=46.7
Q ss_pred ccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeee--cchhhhhhhhccC
Q 009605 223 EEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAI--LPWDEWWDFEVNK 300 (531)
Q Consensus 223 ~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~--~~w~eW~~~~~~k 300 (531)
+.|++||+|+|..= ..|--++|++++.+. +|+++.+-+... .+ .|.. .++.|+++-
T Consensus 170 ~~l~~GDiI~i~t~-------------~~GLDVsHvGi~i~~-~~~l~f~hASs~--~~--kVv~s~~~l~~Y~~~---- 227 (249)
T 2p1g_A 170 PWIKNGDIIALTTN-------------TPGLDVSHMGIAIYI-KGQLHLLHASSK--EG--KVVVGKTALSQMLKD---- 227 (249)
T ss_dssp TTSCTTCEEEEEEC-------------STTCSEEEEEEEEEE-TTEEEEEEEETT--TT--EEEECSSCHHHHHHT----
T ss_pred hcCCCCCEEEEEeC-------------CCCCceeEEEEEEEE-CCeEEEEEcCCC--CC--eEEECCcCHHHHHhc----
Confidence 77999999999832 156678999999997 799998766552 22 3443 499999872
Q ss_pred CCCCCceEEeeCC
Q 009605 301 DDSNPHIALLPLH 313 (531)
Q Consensus 301 d~a~~~va~LPL~ 313 (531)
..+.--|.++...
T Consensus 228 ~~~~~GI~V~R~~ 240 (249)
T 2p1g_A 228 RKSLTGIRVLRMK 240 (249)
T ss_dssp CTTEEEEEEEEC-
T ss_pred CCCCccEEEEeeC
Confidence 1222246665544
No 6
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=74.43 E-value=5.3 Score=40.90 Aligned_cols=63 Identities=13% Similarity=0.261 Sum_probs=45.8
Q ss_pred ccCCCCCEEEEeeecccCCchhhHHHhh-cCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhhhh
Q 009605 223 EEIHSGDFLAVSKIRGRWGGFETLEKWV-TGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWWDF 296 (531)
Q Consensus 223 ~dI~sGDflaiskirGr~~Gf~~l~kw~-tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~~~ 296 (531)
+.||+||+|+|..= .| .+.++. +|=-+.|++++.|. +|+|+..-.-.. .+ .|.-.|+.|+.+.
T Consensus 239 ~~I~~GDII~I~t~--~~----~l~~~ig~GLDVsHvGiai~~-~g~l~lrhASS~---~~-kVVd~pL~~Yl~~ 302 (333)
T 2im9_A 239 SQIPNGAVIEIIRP--NW----DLRQQIGTELDISHLGFAIWI-NNELFFRQASSQ---YG-KVVDVSLIDYLDK 302 (333)
T ss_dssp TTSCTTCEEEEEEE--EE----CCHHHHSSCEEEEEEEEEEEE-TTEEEEEEEETT---TT-EEEEEEHHHHHHH
T ss_pred hhCCCCCEEEEEec--Cc----cccccccCCCcceEEEEEEEE-CCeEEEEecCCC---CC-eEEeccHHHHHhh
Confidence 78999999999942 12 122332 57889999999997 799997765553 22 4558889999884
No 7
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=61.36 E-value=5.4 Score=35.43 Aligned_cols=48 Identities=13% Similarity=0.304 Sum_probs=31.3
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchh
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWD 291 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~ 291 (531)
.++.+++||||+|-+. +|+...|+++.+= +|+ +|++... .+|++.+.+
T Consensus 62 ~V~~~~l~pGDLvFf~----------------~~~~~~HVGIyiG--~g~--~IHA~~~-----~gV~i~~l~ 109 (135)
T 2k1g_A 62 SVSRSNLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHASTS-----SGVIISSMN 109 (135)
T ss_dssp EECGGGCCTTEEEEEE----------------ETTTEEEEEEEEE--TTE--EEEEETT-----TEEEEEETT
T ss_pred EecHHHccCCcEEEEC----------------CCCCCeEEEEEec--CCE--EEEECCC-----CCEEEEeCC
Confidence 5678999999998875 2345679998884 566 3444321 245555554
No 8
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=53.48 E-value=22 Score=34.12 Aligned_cols=53 Identities=28% Similarity=0.386 Sum_probs=36.7
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhh
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDE 292 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~e 292 (531)
.|+.+++++||+|-+. ++..++|++|.+- +|++ |.+... ..|..+|++.+.++
T Consensus 155 ~v~~~~l~pGDLvff~----------------~~~~~~HVgIy~G--~g~~--IHa~~~-~~g~~gV~i~~l~~ 207 (235)
T 2hbw_A 155 AITIDELAPGDLVFFG----------------TPVKATHVGLYLG--DGCY--IHSSGK-AQGRDGIGIDILSE 207 (235)
T ss_dssp EECGGGCCTTCEEEEE----------------CSSCEEEEEEEEE--TTEE--EEEECT-TTSCSEEEEEESST
T ss_pred cccHhhCCCCCEEEEC----------------CCCCCCEEEEEeC--CCEE--EEECCC-CCCCCCEEEEECCc
Confidence 5667899999998876 1246899999884 5653 444321 23567788887776
No 9
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=39.17 E-value=14 Score=36.65 Aligned_cols=40 Identities=13% Similarity=0.413 Sum_probs=28.7
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEc
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGES 274 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES 274 (531)
.++.+++++||+|.+. +. +..|..++|+++.+= +|+ +|.+
T Consensus 243 ~v~~~~l~pGDLvff~---~~---------~~~~~~~~HVgIy~G--~g~--~iha 282 (308)
T 4hpe_A 243 HLPLSQAKAGDLVFFH---ST---------YNAGSYVTHVGIYVG--NNQ--MYHA 282 (308)
T ss_dssp EECGGGCCTTCEEEEE---CS---------SSCSSSEEEEEEECS--TTE--EEEC
T ss_pred eechhhCCCCCEEEEc---CC---------CCCCCCccEEEEEEc--CCE--EEEe
Confidence 4677899999999887 22 234667899998883 565 4454
No 10
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=37.34 E-value=50 Score=28.84 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=22.6
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCc
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGK 268 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~ 268 (531)
.++.+++|+||+|.+. . + | .+|.+|.|- +|+
T Consensus 84 ~v~~~~~~pGDlvff~----~-~----------~--~~HVgIy~G--~g~ 114 (142)
T 3gt2_A 84 KILPQQARKGDLIFYG----P-E----------G--TQSVAMYLG--NNQ 114 (142)
T ss_dssp EECGGGCCTTCEEEES----G-G----------G--CSEEEEEEE--TTE
T ss_pred eechhhCCCCCEEEeC----C-C----------C--CCEEEEEec--CCE
Confidence 5567899999999764 1 1 1 589999885 465
No 11
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=31.77 E-value=38 Score=26.15 Aligned_cols=28 Identities=39% Similarity=0.262 Sum_probs=22.7
Q ss_pred cccCCCCCEEEEeeecccCCchhhHHHhhcC
Q 009605 222 VEEIHSGDFLAVSKIRGRWGGFETLEKWVTG 252 (531)
Q Consensus 222 ~~dI~sGDflaiskirGr~~Gf~~l~kw~tG 252 (531)
...+++||.|.|. |+-+.++.+.++.+|
T Consensus 58 ~~~l~~GD~l~v~---g~~~~~~~~~~~~~~ 85 (86)
T 3jxo_A 58 DTEILSGDKLYVI---VSAEAKETVEETLLG 85 (86)
T ss_dssp TCBCCTTCEEEEE---EETTTHHHHHHHHC-
T ss_pred CCEECCCCEEEEE---ECHHHHHHHHHHHcC
Confidence 4679999999988 777888888887665
No 12
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=31.41 E-value=57 Score=31.08 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=33.3
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCCCcCccceeeecchhhhh
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENDEGQDIIAILPWDEWW 294 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~~~~g~~~I~~~~w~eW~ 294 (531)
.++.+++|+||+|.+. +| ..+|++|.|= +|+ +|++... ...|++.+...||
T Consensus 153 ~V~~~~lqpGDLVff~----------------~g-~~~HVgIYlG--~g~--~IHA~~~----~~~V~i~~l~~~~ 203 (214)
T 3pbi_A 153 HVPPAEAKRGDLIFYG----------------PG-GGQHVTLYLG--NGQ--MLEASGS----AGKVTVSPVRKAG 203 (214)
T ss_dssp EECGGGCCTTCEEEES----------------GG-GCSEEEEEEE--TTE--EEEEETT----TTEEEEEECCCTT
T ss_pred eechhhCCCCCEEEec----------------CC-CCCEEEEEec--CCE--EEEECCC----CCcEEEEECcccC
Confidence 4567899999998874 11 1479999884 565 4555442 2346666666654
No 13
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=31.23 E-value=28 Score=34.81 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=28.5
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEc
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGES 274 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES 274 (531)
.++.++++|||+|.+. +. +..|..++|++|.|- +|+ +|.+
T Consensus 247 ~V~~~~lqpGDLvff~---~~---------~~~g~~~~HVGIYlG--~g~--~IHA 286 (313)
T 4fdy_A 247 EISMEEAQAGDLIFFH---ST---------YNAGTYVTHVAIYLE--GNR--FYHA 286 (313)
T ss_dssp EECTTTCCTTCEEEES---SS---------SCCSSSCCEEEEEEE--TTE--EEES
T ss_pred eechhhCCCCCEEEEe---cC---------CCCCCCCcEEEEEec--CCE--EEEe
Confidence 4677899999999886 11 234567899999984 565 4555
No 14
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=31.08 E-value=53 Score=31.15 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=32.0
Q ss_pred cccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCCC
Q 009605 222 VEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHE 277 (531)
Q Consensus 222 ~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~~ 277 (531)
+..=+.||+|... +| ..+...||+||+..-.++.+.|+|....
T Consensus 109 ~~~P~~Gdl~V~~------~g-------~~~~~yGHVAvV~~V~~~~i~i~EQN~~ 151 (197)
T 3a2z_A 109 PRAPVAGALLIWD------KG-------GEFKDTGHVAIITQLHGNKVRIAEQNVI 151 (197)
T ss_dssp SSCCCTTCEEEEC------SC-------GGGTTTCEEEEEEEECSSEEEEECSSSC
T ss_pred CCCCCCCeEEEEC------CC-------CcCCCCccEEEEEEEcCCeEEEEecccC
Confidence 3455889999887 21 0146789999999865789999998654
No 15
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=27.11 E-value=73 Score=30.42 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=25.7
Q ss_pred cCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcCC
Q 009605 219 NVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGH 276 (531)
Q Consensus 219 ~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~~ 276 (531)
.++.+++++||+|.+. +| ..+|++|.|- +|+ +|++..
T Consensus 153 ~V~~~~lqpGDLvFf~----------------~g-~~~HVgIYlG--~g~--~IHA~~ 189 (214)
T 3ne0_A 153 KIPSSQMRRGDVIFYG----------------PN-GSQHVTIYLG--NGQ--MLEAPD 189 (214)
T ss_dssp EEEGGGCCTTCEEEES----------------GG-GCSEEEEEEE--TTE--EEECCS
T ss_pred eechhhCCCCCEEEec----------------CC-CCCEEEEEeC--CCE--EEEeCC
Confidence 4566899999999764 11 2589999985 464 566643
No 16
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=25.14 E-value=51 Score=32.24 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=28.1
Q ss_pred ccCCcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcC
Q 009605 218 TNVTVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESG 275 (531)
Q Consensus 218 ~~i~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~ 275 (531)
..++.+++++||+|.+..=.| ...++|.+|.+= +|+ +|.+.
T Consensus 243 ~~v~~~~~~pGDlvff~~~~~-------------~~~~~HVgiy~G--~g~--~iha~ 283 (311)
T 3h41_A 243 VAVDKEHLQKGDLIFFAHDQG-------------KGSVHHVAMYIG--DGN--MIHSP 283 (311)
T ss_dssp EEECGGGCCTTCEEEEEHHHH-------------TSCEEEEEEEEE--TTE--EEECC
T ss_pred EEEcHHHCCCCCEEEEecCCC-------------CCCCcEEEEEEe--CCE--EEEEC
Confidence 356778999999999872111 235789999884 565 45553
No 17
>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A
Probab=24.89 E-value=68 Score=30.91 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=26.0
Q ss_pred CcccCCCCCEEEEeeecccCCchhhHHHhhcCcCcceeEEEEEcCCCcEEEEEcC
Q 009605 221 TVEEIHSGDFLAVSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESG 275 (531)
Q Consensus 221 ~~~dI~sGDflaiskirGr~~Gf~~l~kw~tGs~aGHtav~Lrd~dG~L~v~ES~ 275 (531)
+.+++++||+|-+..- +. -..+..++|.+|.+= +|+ +|.+.
T Consensus 217 ~~~~~~pGDLvff~~~-~~---------~~~~~~~~Hvgiy~g--~~~--~iha~ 257 (306)
T 3npf_A 217 DFSNVKRGDLVFFGRK-AT---------AERKEGISHVGIYLG--NKQ--FIHAL 257 (306)
T ss_dssp TCTTCCTTCEEEEEEC-CC---------SSSCCEEEEEEEEEE--TTE--EEEES
T ss_pred ccccCCCccEEEECCC-Cc---------cCCCCCCeEEEEEEC--CCE--EEEcC
Confidence 3489999999887720 10 013556789999884 564 44443
No 18
>2jrn_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus} PDB: 2k3a_A 2lrj_A
Probab=23.36 E-value=2.4e+02 Score=26.39 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=20.3
Q ss_pred CcceeEEEEE-cCCCcEEEEEcCCC
Q 009605 254 YAGHTAVCLR-DSEGKLWVGESGHE 277 (531)
Q Consensus 254 ~aGHtav~Lr-d~dG~L~v~ES~~~ 277 (531)
.-||+|++-. +.||.+.|.|+...
T Consensus 106 ~YGHVAvVe~V~~DGsI~IsE~Ny~ 130 (163)
T 2jrn_A 106 GYGHVAYVENVNSDGSVEVSEMNYN 130 (163)
T ss_dssp TTCEEEEEEECSSSSCEEEEEESTT
T ss_pred CCCEEEEEEEECCCCcEEEEEcccC
Confidence 5799999887 66899999998763
Done!