BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009606
(531 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q57837|Y392_METJA Zinc metalloprotease MJ0392 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0392 PE=1 SV=1
Length = 339
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 45/178 (25%)
Query: 275 LSTFDNLNLLTNGLPGALVTALV---IGVHELGHILAAKSTGVELGVPYFVPSWQIGSFG 331
L L+++ N + A++ L+ + +HELGH AK GV++ +P IG
Sbjct: 25 LVVIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP---IGGVA 81
Query: 332 AITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 391
+ +I +E L++ AGPL F +G VL +V F
Sbjct: 82 MMDKI-----PKEGELRIGIAGPLVSFIIGIVLLIVSQFF-------------------- 116
Query: 392 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 449
D+ +G P+ ++ G N IPA +DGGRI A+ +K
Sbjct: 117 ----------DININGYPLLYTLSLLNLMLG----GFNLIPAFPMDGGRILRAILSKK 160
>sp|Q99155|PEX2_YARLI Peroxisomal biogenesis factor 2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PEX2 PE=3 SV=2
Length = 381
Score = 35.4 bits (80), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 139 GSPLPGVKPQQLDEYIRIPKETIDILKDQVF-GFDTFFVTNQEPYE 183
G+P+P V+ QLD + + E +D+LK+Q+F GF F ++ YE
Sbjct: 11 GAPVPNVRVHQLDASL-LDAELVDLLKNQLFKGFTNFHPEFRDKYE 55
>sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767
/ JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2
Length = 1616
Score = 35.4 bits (80), Expect = 1.0, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 67 TQTEPDSNNDKEKEVHDGQ--ENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADT 124
T+ E DSN+D + DG +++ + +D+ED+ P S D P+++ + N +DV
Sbjct: 705 TEDEEDSNDDVSAD-SDGNVSDDENMSTTDEEDEPKTPKSSED--PKMDEKENESDV--- 758
Query: 125 KGGVQDDGNGEVASGSPLP 143
++++ NG PLP
Sbjct: 759 ---LEEEVNGSKVRDVPLP 774
>sp|P87294|TCP4_SCHPO Putative RNA polymerase II transcriptional coactivator
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16A10.02 PE=1 SV=1
Length = 136
Score = 35.0 bits (79), Expect = 1.4, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 55 RKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 114
+K ++LI V D+ DS +D E E+ + EN + +D++D ++ +++ D VEN
Sbjct: 78 KKLKQLIHEVDDSLGLVDSGSDSEDEIKEKAENNASLKNDEDDLNTKTENKTDDS-SVEN 136
>sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MLH1 PE=1 SV=2
Length = 769
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 109 QPQVENQINGNDVADTKGGVQDDGNGEVAS-GSPLPGVKPQQLDEYIRIPKETIDI 163
QP+ N IN ND+ D Q G+ +V S P D YIR+PKE +++
Sbjct: 454 QPRDANTINDNDLKDQPKKKQKLGDYKVPSIADDEKNALPISKDGYIRVPKERVNV 509
>sp|Q9PNM6|Y1068_CAMJE Putative zinc metalloprotease Cj1068 OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=Cj1068 PE=3
SV=1
Length = 368
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 288 LPGALVTALVIGVHELGHILAAKSTGVELGV 318
L LV + +I HELGH LAA+S GV++ V
Sbjct: 23 LATVLVISFLIFFHELGHFLAARSLGVKVEV 53
>sp|Q9PKW7|Y344_CHLMU Putative zinc metalloprotease TC_0344 OS=Chlamydia muridarum
(strain MoPn / Nigg) GN=TC_0344 PE=3 SV=1
Length = 619
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 54/133 (40%), Gaps = 42/133 (31%)
Query: 290 GALVTALVIGVHELGHILAAKSTG--VELGVPYFVPS----------WQIGS--FGAITR 335
AL +I +HELGH+LAAK+ G VE F P+ ++IG+ FG R
Sbjct: 9 AALALGFLILIHELGHLLAAKAVGMTVESFSIGFGPALVRKKMGSIEYRIGAIPFGGYVR 68
Query: 336 I----RNIVSKREDLLK-------------------VAAAGPLAG-----FSLGFVLFLV 367
I RN ED K V AAGPLA F+ G + F
Sbjct: 69 IKGMDRNDKEISEDREKTVYDIPGGFFSKSPWKRIFVLAAGPLANILVALFAFGILYFSG 128
Query: 368 GFIFPPSDGIGIV 380
G P S+ IV
Sbjct: 129 GRTKPFSEHTSIV 141
>sp|Q5RDM4|HSP74_PONAB Heat shock 70 kDa protein 4 OS=Pongo abelii GN=HSPA4 PE=2 SV=1
Length = 840
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 13/154 (8%)
Query: 80 EVHDGQENQPATASDQ---EDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGEV 136
EVH +EN+ +DQ E++K Q D + +P VE Q A+ K ++ +
Sbjct: 499 EVHKSEENEEPMETDQNAKEEEKMQVDQE---EPHVEEQ-QQQTPAENKAESEEMETSQA 554
Query: 137 ASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNL---R 193
S PQ ++ + I ++ D + EG ++ + L R
Sbjct: 555 GSKDKKMDQPPQAKKAKVKTSTVDLPIENQLLWQIDREMLNLYIENEGKMIMQDKLEKER 614
Query: 194 GQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDK 227
A E+ M++K +Y+ F+ EDD+
Sbjct: 615 NDAKNAVEEYVYEMRDKLSGEYEKFV---SEDDR 645
>sp|O84075|Y072_CHLTR Putative zinc metalloprotease CT_072 OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=CT_072 PE=3 SV=1
Length = 619
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 290 GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR 335
AL +I +HELGH+LAAK+ G+ V S+ IG A+ R
Sbjct: 9 AALALGFLILIHELGHLLAAKAVGMS------VESFSIGFGPALVR 48
>sp|A8N936|DNLI4_COPC7 DNA ligase 4 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC
MYA-4618 / FGSC 9003) GN=LIG4 PE=3 SV=2
Length = 1025
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 86/188 (45%), Gaps = 15/188 (7%)
Query: 66 DTQTEPDSNNDKEKEVH-----DGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGND 120
D + P+ +++ E+H D +++ A D+ED ++ DS ++ E + + +D
Sbjct: 812 DEEQAPEIKEEQDGELHEWLKVDDRKSPALPAHDEEDSVTEDDSD-NADVADEEEPDLDD 870
Query: 121 VADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRI--PKETIDILKDQVFGFDTFFVTN 178
KG +D+G G +A+ S P +D +++ +E +D D +F F++ +
Sbjct: 871 WFQVKGETEDEGAGALATASRHRETTP-DVDGDVKMGESEEAMDYDPDVIFKHLCFYLDS 929
Query: 179 -QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFG-----DQYKLFLLVNPEDDKPVAVV 232
G+ + K++E++ +K+ G D+ KL +V + D V
Sbjct: 930 PANAQRHGMATRPKYEAAITKSFEEVEKLIKDNGGKIVDLDEPKLTHVVLDKRDDSRRVE 989
Query: 233 VPRKTLQP 240
+ ++T +P
Sbjct: 990 LMKRTSKP 997
>sp|P34932|HSP74_HUMAN Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4
Length = 840
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 13/154 (8%)
Query: 80 EVHDGQENQPATASDQ---EDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGEV 136
EVH +EN+ +DQ E++K Q D + +P VE Q A+ K ++ +
Sbjct: 499 EVHKSEENEEPMETDQNAKEEEKMQVDQE---EPHVEEQ-QQQTPAENKAESEEMETSQA 554
Query: 137 ASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNL---R 193
S PQ ++ + I ++ D + EG ++ + L R
Sbjct: 555 GSKDKKMDQPPQAKKAKVKTSTVDLPIENQLLWQIDREMLNLYIENEGKMIMQDKLEKER 614
Query: 194 GQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDK 227
A E+ M++K +Y+ F+ EDD+
Sbjct: 615 NDAKNAVEEYVYEMRDKLSGEYEKFV---SEDDR 645
>sp|Q7Z7W5|DNLI4_COPCI DNA ligase 4 OS=Coprinopsis cinerea GN=LIG4 PE=2 SV=1
Length = 1025
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 86/188 (45%), Gaps = 15/188 (7%)
Query: 66 DTQTEPDSNNDKEKEVH-----DGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGND 120
D + P+ +++ E+H D +++ A D+ED ++ DS ++ E + + +D
Sbjct: 812 DEEQAPEIKEEQDGELHEWLKVDDRKSPALPAHDEEDSVTEDDSD-NADVADEEEPDLDD 870
Query: 121 VADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRI--PKETIDILKDQVFGFDTFFVTN 178
KG +D+G G +A+ S P +D +++ +E +D D +F F++ +
Sbjct: 871 WFQVKGETEDEGAGALATASRHRETTP-DVDGDVKMGESEEAMDYDPDVIFKHLCFYLDS 929
Query: 179 -QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFG-----DQYKLFLLVNPEDDKPVAVV 232
G+ + K++E++ +K+ G D+ KL +V + D V
Sbjct: 930 PANAQRHGMATRPKYEAAITKSFEEVEKLIKDNGGKIVDLDEPKLTHVVLDKRDDSRRVE 989
Query: 233 VPRKTLQP 240
+ ++T +P
Sbjct: 990 LMKRTSKP 997
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,420,686
Number of Sequences: 539616
Number of extensions: 9495127
Number of successful extensions: 29976
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 29296
Number of HSP's gapped (non-prelim): 661
length of query: 531
length of database: 191,569,459
effective HSP length: 122
effective length of query: 409
effective length of database: 125,736,307
effective search space: 51426149563
effective search space used: 51426149563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)