BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009607
         (531 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZSH|B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della
          Recognition By The Gibberellin Receptor
 pdb|2ZSI|B Chain B, Structural Basis Of Gibberellin(Ga4)-Induced Della
          Recognition By The Gibberellin Receptor
          Length = 110

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 53/66 (80%), Gaps = 1/66 (1%)

Query: 30 IDGLLAGAGYKVRSSELRQVAQRLERLETVMVN-SPADISQLASDTVHYNPSDLASWVDS 88
          +D LLA  GYKVRSSE+  VAQ+LE+LE +M N    D+SQLA++TVHYNP++L +W+DS
Sbjct: 24 MDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLATETVHYNPAELYTWLDS 83

Query: 89 LLSEFN 94
          +L++ N
Sbjct: 84 MLTDLN 89


>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
           Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
           Homolog Osfd1
 pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
           Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
           Homolog Osfd1
 pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
           Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
           Homolog Osfd1
 pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
           Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
           Homolog Osfd1
          Length = 170

 Score = 32.7 bits (73), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 302 RDSL---REIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLH 358
           RD L   R +G  L    RS N++ T+     S   ++KP M+   P+  +  N +   +
Sbjct: 8   RDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFY 67

Query: 359 KLLGSDPARNSPME 372
            L+  DP   SP +
Sbjct: 68  TLVMVDPDAPSPSD 81


>pdb|2OC6|A Chain A, Crystal Structure Of A Protein From The Duf1801 Family
           (Ydhg, Bsu05750) From Bacillus Subtilis At 1.75 A
           Resolution
 pdb|2OC6|B Chain B, Crystal Structure Of A Protein From The Duf1801 Family
           (Ydhg, Bsu05750) From Bacillus Subtilis At 1.75 A
           Resolution
          Length = 124

 Score = 30.8 bits (68), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 363 SDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFT 405
           +DP      E VL WI+N  P + T    E   NQP F D  T
Sbjct: 13  ADPFHRERTEEVLTWIKNKYPNLHT----EIKWNQPXFTDHGT 51


>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
           Acidocaldarius
 pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
           Acidocaldarius Co- Crystallized With Its Ligand
          Length = 453

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 15/66 (22%)

Query: 33  LLAGAGYKVRSSELRQVAQRLERLETVMVNSPADISQLASDTVHYNPSDLASW---VDSL 89
           +++G G      +L+ VA+ +++++ + +N P             +PS L SW   VD++
Sbjct: 397 VISGLGRPSLLFKLKAVAESMKKIKELYLNYPR------------SPSSLGSWRREVDNV 444

Query: 90  LSEFNQ 95
           L+EFN+
Sbjct: 445 LTEFNK 450


>pdb|2ZQ5|A Chain A, Crystal Structure Of Sulfotransferase Stf1 From
           Mycobacterium Tuberculosis H37rv (Type1 Form)
          Length = 384

 Score = 28.5 bits (62), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 322 RFTFRGVAASRLEDVKPWM-----LQVSPKEALAVNSILQ-----LHKLLGSDPA 366
           RF  RG   +RL     W      + V+ K  + V  +++     LH+LLG+DPA
Sbjct: 62  RFFLRGALVARLLSQSAWKQYPEHVDVAIKRPIFVTGLVRTGTTALHRLLGADPA 116


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,206,489
Number of Sequences: 62578
Number of extensions: 465233
Number of successful extensions: 984
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 9
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)