Query 009607
Match_columns 531
No_of_seqs 195 out of 726
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 15:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 1E-110 3E-115 880.5 38.0 359 156-518 1-374 (374)
2 PF12041 DELLA: Transcriptiona 100.0 7.4E-41 1.6E-45 270.4 5.1 68 31-98 1-69 (73)
3 PRK15451 tRNA cmo(5)U34 methyl 97.3 0.0053 1.2E-07 61.4 14.5 192 233-472 34-227 (247)
4 TIGR00740 methyltransferase, p 96.4 0.16 3.4E-06 50.3 16.3 106 257-389 53-159 (239)
5 TIGR02716 C20_methyl_CrtF C-20 95.8 0.11 2.3E-06 53.6 12.2 116 246-393 138-257 (306)
6 TIGR02752 MenG_heptapren 2-hep 95.1 2.4 5.2E-05 41.4 18.2 178 247-473 35-216 (231)
7 PLN02233 ubiquinone biosynthes 94.5 2.7 5.9E-05 42.6 17.4 132 246-405 62-195 (261)
8 PRK14103 trans-aconitate 2-met 94.0 2.9 6.2E-05 41.8 16.3 109 247-393 19-128 (255)
9 PRK06202 hypothetical protein; 92.7 2.6 5.6E-05 41.5 13.4 107 254-389 57-165 (232)
10 PF13489 Methyltransf_23: Meth 92.3 0.56 1.2E-05 42.3 7.6 34 255-297 20-53 (161)
11 PTZ00098 phosphoethanolamine N 91.9 3.9 8.5E-05 41.5 13.9 114 243-389 38-154 (263)
12 PF01209 Ubie_methyltran: ubiE 91.5 0.47 1E-05 47.6 6.7 182 248-476 38-221 (233)
13 COG2226 UbiE Methylase involve 91.5 7.5 0.00016 39.5 15.2 189 234-472 27-221 (238)
14 PLN02336 phosphoethanolamine N 90.3 9.6 0.00021 41.7 16.0 113 246-390 255-368 (475)
15 PRK08317 hypothetical protein; 90.0 14 0.0003 35.4 15.1 43 249-297 11-53 (241)
16 TIGR01934 MenG_MenH_UbiE ubiqu 89.7 19 0.00041 34.3 16.5 48 244-297 26-73 (223)
17 PRK00216 ubiE ubiquinone/menaq 89.2 15 0.00033 35.3 14.9 43 249-297 43-85 (239)
18 PLN02396 hexaprenyldihydroxybe 89.2 5.9 0.00013 41.8 12.8 152 259-473 133-287 (322)
19 PF12847 Methyltransf_18: Meth 87.8 1.6 3.4E-05 37.2 6.2 105 260-390 4-110 (112)
20 PLN02585 magnesium protoporphy 86.8 5.6 0.00012 41.9 10.7 103 257-389 144-248 (315)
21 PF09243 Rsm22: Mitochondrial 85.9 5.2 0.00011 41.1 9.8 138 241-408 13-156 (274)
22 PLN02336 phosphoethanolamine N 85.1 9.1 0.0002 41.9 11.9 137 247-417 27-172 (475)
23 smart00138 MeTrc Methyltransfe 84.7 1.5 3.3E-05 44.7 5.2 53 254-310 96-150 (264)
24 TIGR00477 tehB tellurite resis 82.9 6.7 0.00015 37.8 8.6 111 244-386 17-128 (195)
25 PRK12335 tellurite resistance 82.8 8.5 0.00018 39.4 9.8 95 260-386 123-218 (287)
26 PF13649 Methyltransf_25: Meth 82.1 1.6 3.5E-05 37.1 3.6 97 261-383 1-99 (101)
27 PF03291 Pox_MCEL: mRNA cappin 81.5 5.8 0.00012 42.1 8.2 116 257-388 62-183 (331)
28 PF13847 Methyltransf_31: Meth 81.4 4.5 9.7E-05 37.0 6.5 105 256-389 2-108 (152)
29 PRK05134 bifunctional 3-demeth 81.3 49 0.0011 32.3 14.2 23 452-474 182-204 (233)
30 PRK05785 hypothetical protein; 81.2 21 0.00046 35.4 11.7 94 258-391 52-146 (226)
31 TIGR03438 probable methyltrans 81.1 14 0.00031 38.2 10.8 122 248-392 56-178 (301)
32 TIGR02072 BioC biotin biosynth 80.6 35 0.00075 32.7 12.7 109 246-390 20-134 (240)
33 PRK01683 trans-aconitate 2-met 79.2 30 0.00064 34.4 12.1 114 245-394 19-133 (258)
34 TIGR02021 BchM-ChlM magnesium 77.9 17 0.00036 35.4 9.6 116 239-388 35-155 (219)
35 PLN02244 tocopherol O-methyltr 77.8 34 0.00073 36.1 12.5 99 257-387 118-219 (340)
36 PRK11207 tellurite resistance 77.6 18 0.00039 35.0 9.7 112 245-388 18-131 (197)
37 TIGR02081 metW methionine bios 77.4 45 0.00096 31.8 12.3 40 248-297 6-45 (194)
38 TIGR03587 Pse_Me-ase pseudamin 75.6 35 0.00075 33.4 11.2 98 260-393 46-145 (204)
39 PRK11036 putative S-adenosyl-L 71.9 35 0.00077 34.1 10.4 108 247-389 35-147 (255)
40 COG2227 UbiG 2-polyprenyl-3-me 71.0 14 0.00031 37.7 7.3 99 257-388 59-158 (243)
41 PF00891 Methyltransf_2: O-met 70.5 13 0.00027 36.8 6.8 111 247-395 90-204 (241)
42 PLN02490 MPBQ/MSBQ methyltrans 67.8 70 0.0015 34.2 12.0 98 257-389 113-213 (340)
43 PF05269 Phage_CII: Bacterioph 66.3 4 8.6E-05 35.7 1.9 26 30-55 51-76 (91)
44 smart00828 PKS_MT Methyltransf 63.7 63 0.0014 31.2 10.0 100 260-389 2-102 (224)
45 PRK11705 cyclopropane fatty ac 61.9 64 0.0014 34.8 10.6 112 244-390 154-266 (383)
46 PF08241 Methyltransf_11: Meth 61.1 21 0.00046 28.6 5.4 93 262-388 1-94 (95)
47 PF08242 Methyltransf_12: Meth 60.4 8 0.00017 32.4 2.7 30 262-298 1-30 (99)
48 COG4106 Tam Trans-aconitate me 60.2 20 0.00043 36.5 5.8 114 250-398 23-136 (257)
49 TIGR00138 gidB 16S rRNA methyl 58.7 1.1E+02 0.0024 29.3 10.6 97 259-391 44-142 (181)
50 PRK15068 tRNA mo(5)U34 methylt 58.0 1.4E+02 0.0031 31.3 12.2 101 260-390 125-225 (322)
51 PRK15001 SAM-dependent 23S rib 57.6 56 0.0012 35.5 9.2 109 260-391 231-340 (378)
52 TIGR00452 methyltransferase, p 56.3 1.4E+02 0.0029 31.6 11.6 113 248-390 112-224 (314)
53 PRK14968 putative methyltransf 54.6 1.2E+02 0.0027 27.9 10.0 43 257-312 23-65 (188)
54 PRK00107 gidB 16S rRNA methylt 54.1 2.2E+02 0.0047 27.7 12.7 97 259-391 47-145 (187)
55 COG2230 Cfa Cyclopropane fatty 52.5 2.2E+02 0.0048 29.8 12.2 115 241-386 56-171 (283)
56 TIGR03439 methyl_EasF probable 49.4 1.4E+02 0.003 31.7 10.3 150 248-417 69-234 (319)
57 PF13679 Methyltransf_32: Meth 47.7 49 0.0011 30.2 6.0 41 253-297 21-62 (141)
58 PRK10258 biotin biosynthesis p 46.0 2.8E+02 0.0061 27.3 11.6 44 245-297 30-73 (251)
59 PF07521 RMMBL: RNA-metabolisi 45.6 21 0.00045 26.5 2.6 24 368-391 17-40 (43)
60 PF02353 CMAS: Mycolic acid cy 45.4 74 0.0016 32.8 7.5 114 246-390 51-165 (273)
61 PRK10909 rsmD 16S rRNA m(2)G96 44.9 1.7E+02 0.0037 28.7 9.6 105 260-396 56-164 (199)
62 PRK06922 hypothetical protein; 42.0 1.6E+02 0.0035 34.5 10.1 111 259-390 420-537 (677)
63 PLN02232 ubiquinone biosynthes 41.9 2.4E+02 0.0052 26.2 9.8 25 455-479 127-151 (160)
64 PRK00121 trmB tRNA (guanine-N( 40.3 1.3E+02 0.0028 29.2 7.9 110 257-389 40-154 (202)
65 PRK13255 thiopurine S-methyltr 40.1 2.7E+02 0.0058 27.6 10.3 117 258-400 38-168 (218)
66 PRK07580 Mg-protoporphyrin IX 39.8 1.3E+02 0.0028 29.0 7.9 99 256-388 62-163 (230)
67 PLN02446 (5-phosphoribosyl)-5- 38.7 39 0.00084 35.0 4.2 27 254-281 55-81 (262)
68 PF03848 TehB: Tellurite resis 38.6 1.5E+02 0.0032 29.2 8.1 111 247-389 20-131 (192)
69 PRK03522 rumB 23S rRNA methylu 37.8 2.8E+02 0.006 28.9 10.4 100 259-392 175-275 (315)
70 PRK00050 16S rRNA m(4)C1402 me 36.4 81 0.0017 33.1 6.1 58 247-314 9-66 (296)
71 PRK09489 rsmC 16S ribosomal RN 35.7 2.5E+02 0.0055 29.9 9.9 103 260-390 199-302 (342)
72 TIGR01983 UbiG ubiquinone bios 35.3 4.1E+02 0.0088 25.4 14.5 100 258-389 46-147 (224)
73 TIGR02085 meth_trns_rumB 23S r 34.3 3.7E+02 0.008 28.8 11.0 98 260-391 236-334 (374)
74 TIGR00537 hemK_rel_arch HemK-r 34.1 3.8E+02 0.0083 25.0 9.9 49 260-325 22-70 (179)
75 KOG4300 Predicted methyltransf 32.3 3.9E+02 0.0086 27.3 9.8 128 254-418 73-202 (252)
76 TIGR03534 RF_mod_PrmC protein- 31.1 3.4E+02 0.0074 26.4 9.4 34 257-297 87-120 (251)
77 COG1093 SUI2 Translation initi 30.9 68 0.0015 33.3 4.4 43 285-327 219-261 (269)
78 COG2242 CobL Precorrin-6B meth 30.6 92 0.002 30.7 5.1 53 250-316 27-82 (187)
79 TIGR02129 hisA_euk phosphoribo 29.9 56 0.0012 33.7 3.6 24 254-281 50-73 (253)
80 TIGR01626 ytfJ_HI0045 conserve 29.7 1.1E+02 0.0023 30.1 5.3 113 257-381 59-182 (184)
81 PRK14751 tetracycline resistan 29.5 22 0.00047 24.2 0.4 10 74-83 7-16 (28)
82 TIGR02469 CbiT precorrin-6Y C5 27.9 1.4E+02 0.0031 25.2 5.5 31 260-297 22-52 (124)
83 PRK03646 dadX alanine racemase 27.4 1.5E+02 0.0032 31.6 6.5 56 257-317 117-177 (355)
84 PF11455 DUF3018: Protein of 26.8 32 0.0007 28.4 1.0 21 454-474 3-23 (65)
85 PF08499 PDEase_I_N: 3'5'-cycl 26.6 29 0.00062 28.1 0.7 26 64-92 5-31 (59)
86 TIGR01007 eps_fam capsular exo 26.6 4.3E+02 0.0093 25.1 9.0 28 369-396 166-193 (204)
87 KOG1270 Methyltransferases [Co 26.5 1.9E+02 0.0041 30.3 6.7 102 251-384 86-188 (282)
88 PRK00517 prmA ribosomal protei 26.4 2.1E+02 0.0045 28.7 7.0 59 242-312 102-162 (250)
89 COG1500 Predicted exosome subu 25.9 1.8E+02 0.0038 29.7 6.2 54 434-488 99-153 (234)
90 smart00650 rADc Ribosomal RNA 25.6 1.4E+02 0.0031 27.7 5.4 42 247-297 3-44 (169)
91 TIGR03533 L3_gln_methyl protei 25.5 4.6E+02 0.01 26.9 9.5 53 258-325 122-176 (284)
92 PRK00274 ksgA 16S ribosomal RN 24.7 1.4E+02 0.003 30.4 5.5 40 249-297 34-73 (272)
93 PHA03411 putative methyltransf 23.9 92 0.002 32.6 4.0 67 223-297 29-97 (279)
94 PRK13168 rumA 23S rRNA m(5)U19 23.1 6.6E+02 0.014 27.5 10.6 109 250-391 290-400 (443)
95 COG0075 Serine-pyruvate aminot 21.8 5.7E+02 0.012 28.0 9.6 100 235-344 86-185 (383)
96 PRK11873 arsM arsenite S-adeno 21.8 7.3E+02 0.016 24.7 10.0 99 259-388 79-180 (272)
97 KOG1165 Casein kinase (serine/ 21.3 53 0.0012 35.6 1.7 14 254-267 163-176 (449)
98 TIGR01088 aroQ 3-dehydroquinat 21.3 1.4E+02 0.0029 28.3 4.1 41 287-327 8-48 (141)
99 COG0357 GidB Predicted S-adeno 20.1 2.8E+02 0.0061 27.9 6.4 108 195-338 21-131 (215)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=1.2e-110 Score=880.45 Aligned_cols=359 Identities=52% Similarity=0.911 Sum_probs=336.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhccCCCCCc--chHHHHHHHHHHHHhhccCCCCcc-----CC-----Cch
Q 009607 156 LVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSCG--IGKVAGCFIDALSFRIMGVGGSIC-----GS-----VSE 223 (531)
Q Consensus 156 Lv~lLl~CAeAV~~gd~~~A~~lL~~i~~las~~~s~~G--~qRlA~yFaeAL~~Rl~~~~~~~~-----~~-----~~~ 223 (531)
|++||++||+||+.||...|+.+|++|+++++ +.| +||||+||++||.+||.+.++..+ .. ...
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as----~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~ 76 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLAS----PTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSE 76 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHH
Confidence 68999999999999999999999999999975 566 999999999999999999654321 11 111
Q ss_pred HHHHHHHHHhhCChhhhHHHHHHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChh
Q 009607 224 NEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRD 303 (531)
Q Consensus 224 ~~~~~~~f~e~~P~~kFahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~ 303 (531)
...+|+.||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++|.++..+
T Consensus 77 ~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~ 156 (374)
T PF03514_consen 77 QLAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSAD 156 (374)
T ss_pred HHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHH
Confidence 22358999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCC
Q 009607 304 SLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNP 383 (531)
Q Consensus 304 ~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~P 383 (531)
.+++||+||++||+++||||||++|...++|++++++|++++||+|||||+|+||||++++....++++.||+.||+|+|
T Consensus 157 ~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P 236 (374)
T PF03514_consen 157 ELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNP 236 (374)
T ss_pred HHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCC
Confidence 99999999999999999999999988889999999999999999999999999999998877777899999999999999
Q ss_pred cEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhhhhcCC--CCHHHHHHHH-HHhhhhhhhhhccCCCccccccchhhHH
Q 009607 384 KIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACP--LQPEKALAEI-YLQREICNVVCCEGSARVERHEPLAKWR 460 (531)
Q Consensus 384 kIvtlvEqEanhN~p~F~~RF~eAL~yYsalFDSLea~~--~s~er~~~E~-~lgreI~NiVAcEG~~RvERhE~~~~Wr 460 (531)
+|||++|+|+|||+|+|++||.|||+||+++|||||++. .+.+|..+|+ +||++|+|||||||.+|+||||++++|+
T Consensus 237 ~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~ 316 (374)
T PF03514_consen 237 KVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWR 316 (374)
T ss_pred CEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHH
Confidence 999999999999999999999999999999999999985 5678877675 6999999999999999999999999999
Q ss_pred HHHhcCCceeccCChHHHHHHHHHHhhcCCCCceEEecCCEEEEeeCCceeEEEecce
Q 009607 461 NRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWH 518 (531)
Q Consensus 461 ~rm~~AGF~~vpls~~a~~qAk~Ll~~~~~~gy~v~e~~g~L~LgWk~rpL~aaSAWr 518 (531)
.||.+|||+++|+|++++.|||+||++|+++||+|++++|||+||||++||+++||||
T Consensus 317 ~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 317 RRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 9999999999999999999999999999888999999999999999999999999997
No 2
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=100.00 E-value=7.4e-41 Score=270.37 Aligned_cols=68 Identities=69% Similarity=1.009 Sum_probs=49.9
Q ss_pred hhhhhhcCCcccchhHHHHHHHHHHHHHHhhCCccc-cccccccccccCCCchhhHHHHhhhccCCCCC
Q 009607 31 DGLLAGAGYKVRSSELRQVAQRLERLETVMVNSPAD-ISQLASDTVHYNPSDLASWVDSLLSEFNQPPL 98 (531)
Q Consensus 31 d~~l~~~~~~~~~~~~~~~~~~le~le~~~~~~~~~-~~~~~~dtvh~npsd~~~w~~~~~~e~~~~~~ 98 (531)
||+||++|||||||||+||||||||||+||||+|+| |+||||||||||||||++||||||+||||+|+
T Consensus 1 DellA~lGYkVrsSdmadVAQkLEqLE~vmg~~~~d~ls~lasDTVhyNPSDLs~WvesMLsEln~~~~ 69 (73)
T PF12041_consen 1 DELLAVLGYKVRSSDMADVAQKLEQLEMVMGNAQEDGLSQLASDTVHYNPSDLSSWVESMLSELNPPPN 69 (73)
T ss_dssp -HHHHTTT-B-BGGGHHHHHHHHHHHHHHHTT---------HCCHCCS-TTBHHHHHHHHHHC------
T ss_pred CchhhhhcccccchHHHHHHHHHHHHHHHHcccccchHHHhhhhhhccChHHHHHHHHHHHHhcCCCCC
Confidence 899999999999999999999999999999999999 99999999999999999999999999998753
No 3
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.32 E-value=0.0053 Score=61.43 Aligned_cols=192 Identities=12% Similarity=0.090 Sum_probs=100.5
Q ss_pred hhCChhhhHHHHHHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHH
Q 009607 233 EACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRL 312 (531)
Q Consensus 233 e~~P~~kFahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL 312 (531)
...|.+...|-.++..+-.-+. ..-+|+|+|.|.|.--..|.+.+ ..|..++|||++.. ..++...+++
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~l~~~~-----~~~~~~v~gvD~S~----~ml~~A~~~~ 102 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNI-----HHDNCKIIAIDNSP----AMIERCRRHI 102 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHHHHHhc-----CCCCCeEEEEeCCH----HHHHHHHHHH
Confidence 4567777777666543322222 23479999999987433333222 13557999998753 4566665555
Q ss_pred HHHHHhCCceEEEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCc-EEEEEe
Q 009607 313 AELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPK-IMTVVE 390 (531)
Q Consensus 313 ~~fA~~lgvpFeF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~Pk-IvtlvE 390 (531)
.++. ..-.++|.. . ...++. .....+++ +.+.||++.. ..+..+|+.| +.|+|. +++++|
T Consensus 103 ~~~~--~~~~v~~~~--~-d~~~~~-----~~~~D~vv--~~~~l~~l~~------~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 103 DAYK--APTPVDVIE--G-DIRDIA-----IENASMVV--LNFTLQFLEP------SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhcC--CCCCeEEEe--C-ChhhCC-----CCCCCEEe--hhhHHHhCCH------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4431 111344432 2 333332 12224444 4466888743 3466777666 678997 556666
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHhhhhhhhhhccCCCccccccchhhHHHHHhcCCcee
Q 009607 391 QESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRP 470 (531)
Q Consensus 391 qEanhN~p~F~~RF~eAL~yYsalFDSLea~~~s~er~~~E~~lgreI~NiVAcEG~~RvERhE~~~~Wr~rm~~AGF~~ 470 (531)
.=... .+.+-+.+.+..+.|. .....+..+ +.+. ..... ++-++.+.++...+|++|||+.
T Consensus 165 ~~~~~-~~~~~~~~~~~~~~~~-----~~~g~s~~e--i~~~--~~~~~---------~~~~~~~~~~~~~~L~~aGF~~ 225 (247)
T PRK15451 165 KFSFE-DAKVGELLFNMHHDFK-----RANGYSELE--ISQK--RSMLE---------NVMLTDSVETHKARLHKAGFEH 225 (247)
T ss_pred ecCCC-cchhHHHHHHHHHHHH-----HHcCCCHHH--HHHH--HHHHH---------hhcccCCHHHHHHHHHHcCchh
Confidence 43322 2233344444332221 111111111 1110 01112 2445678889999999999987
Q ss_pred cc
Q 009607 471 LH 472 (531)
Q Consensus 471 vp 472 (531)
+-
T Consensus 226 v~ 227 (247)
T PRK15451 226 SE 227 (247)
T ss_pred HH
Confidence 54
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.42 E-value=0.16 Score=50.35 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=59.7
Q ss_pred ceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCcccc
Q 009607 257 DCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDV 336 (531)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl 336 (531)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||+... ..++.+.+++.++. .+...+|.. . .+.++
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~----~ml~~a~~~~~~~~--~~~~v~~~~--~-d~~~~ 118 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQ----PMVERCRQHIAAYH--SEIPVEILC--N-DIRHV 118 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCH----HHHHHHHHHHHhcC--CCCCeEEEE--C-ChhhC
Confidence 33479999999985 4455554421 2567999998742 45666655554432 122344432 1 33333
Q ss_pred cccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEE
Q 009607 337 KPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVV 389 (531)
Q Consensus 337 ~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlv 389 (531)
. .....+++ |.+.||++.+ ..+..+|+.+ |.|+|.-.+++
T Consensus 119 ~-----~~~~d~v~--~~~~l~~~~~------~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 119 E-----IKNASMVI--LNFTLQFLPP------EDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred C-----CCCCCEEe--eecchhhCCH------HHHHHHHHHHHHhcCCCeEEEE
Confidence 2 12223433 4556788743 3355677666 66799877554
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.82 E-value=0.11 Score=53.56 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=66.6
Q ss_pred HHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce--E
Q 009607 246 NQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR--F 323 (531)
Q Consensus 246 NqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp--F 323 (531)
.+.|++.+.-.+.-+|+|+|.|.|. +..+++++. |.+++|+++.| ..++.+.+ .++..|+. +
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-----~~~~~a~~----~~~~~gl~~rv 201 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-----GAIDLVNE----NAAEKGVADRM 201 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-----HHHHHHHH----HHHhCCccceE
Confidence 5677787766666799999999984 445555552 66899999764 34544443 44445553 4
Q ss_pred EEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCc-EEEEEecCC
Q 009607 324 TFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPK-IMTVVEQES 393 (531)
Q Consensus 324 eF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~Pk-IvtlvEqEa 393 (531)
+|.. . ...+.. +...+++.+.. -||+..+ .....+|+.+ +.|+|. .++++|.-.
T Consensus 202 ~~~~--~-d~~~~~-----~~~~D~v~~~~--~lh~~~~------~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 202 RGIA--V-DIYKES-----YPEADAVLFCR--ILYSANE------QLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EEEe--c-CccCCC-----CCCCCEEEeEh--hhhcCCh------HHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 4433 2 111111 11234444433 4676433 3345677665 678995 556666543
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.05 E-value=2.4 Score=41.36 Aligned_cols=178 Identities=13% Similarity=0.151 Sum_probs=85.3
Q ss_pred HHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce-EEE
Q 009607 247 QAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR-FTF 325 (531)
Q Consensus 247 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp-FeF 325 (531)
+.++..+.-.+.-+|+|+|.|.|.-.. .|+.+ .+|..++|||+... ..++.+.+++. ..+++ .+|
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~----~la~~--~~~~~~v~gvD~s~----~~~~~a~~~~~----~~~~~~v~~ 100 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSI----ALAEA--VGPEGHVIGLDFSE----NMLSVGRQKVK----DAGLHNVEL 100 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHH----HHHHH--hCCCCEEEEEECCH----HHHHHHHHHHH----hcCCCceEE
Confidence 456666654445689999999987333 33333 13456999998642 34444444443 23332 333
Q ss_pred EEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHH-HHHhcCCcEEEEEecCCCCCCcchHHHH
Q 009607 326 RGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLG-WIRNLNPKIMTVVEQESNHNQPEFLDRF 404 (531)
Q Consensus 326 ~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~-~Ir~L~PkIvtlvEqEanhN~p~F~~RF 404 (531)
. .. ..+++. +.-..=+.|+.+ +.+|++.+ ...+|+ ..|.|+|.-.+++-.....+.+. +
T Consensus 101 ~--~~-d~~~~~---~~~~~fD~V~~~--~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~----~ 160 (231)
T TIGR02752 101 V--HG-NAMELP---FDDNSFDYVTIG--FGLRNVPD--------YMQVLREMYRVVKPGGKVVCLETSQPTIPG----F 160 (231)
T ss_pred E--Ee-chhcCC---CCCCCccEEEEe--cccccCCC--------HHHHHHHHHHHcCcCeEEEEEECCCCCChH----H
Confidence 2 11 222221 110111445444 44676533 345665 45778998554433222223222 3
Q ss_pred HHHHHHHHHHhhhhhc-CCCCHHHHHHH-HHHhhhhhhhhhccCCCccccccchhhHHHHHhcCCceeccC
Q 009607 405 TTALYYYSTMFDSLEA-CPLQPEKALAE-IYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHL 473 (531)
Q Consensus 405 ~eAL~yYsalFDSLea-~~~s~er~~~E-~~lgreI~NiVAcEG~~RvERhE~~~~Wr~rm~~AGF~~vpl 473 (531)
...+.+|...+-.+.. ...... .+ .++... +.+--+.++++..|+.+||+.+.+
T Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~------------~~~~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 161 KQLYFFYFKYIMPLFGKLFAKSY---KEYSWLQES------------TRDFPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred HHHHHHHHcChhHHhhHHhcCCH---HHHHHHHHH------------HHHcCCHHHHHHHHHHcCCCeeEE
Confidence 3333333211111111 000000 01 111111 223446678999999999987654
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.45 E-value=2.7 Score=42.62 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=69.0
Q ss_pred HHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEE
Q 009607 246 NQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTF 325 (531)
Q Consensus 246 NqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF 325 (531)
...+++.+.-.+.-+|+|+|.|.|. +...|+.+. +|.-++|||+... +.++.+.++....++...-..+|
T Consensus 62 r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~----~ml~~A~~r~~~~~~~~~~~i~~ 131 (261)
T PLN02233 62 KRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSS----EQLAVAASRQELKAKSCYKNIEW 131 (261)
T ss_pred HHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCH----HHHHHHHHHhhhhhhccCCCeEE
Confidence 3444444443445689999999997 334455442 2345999998753 45666655543222222223444
Q ss_pred EEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHH-HHHhcCCcE-EEEEecCCCCCCcchHHH
Q 009607 326 RGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLG-WIRNLNPKI-MTVVEQESNHNQPEFLDR 403 (531)
Q Consensus 326 ~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~-~Ir~L~PkI-vtlvEqEanhN~p~F~~R 403 (531)
..- ..+++ .+.++..=+|-+.+.||++.+ ...+|+ ..|-|+|.- ++++|-.. ....|...
T Consensus 132 ~~~---d~~~l-----p~~~~sfD~V~~~~~l~~~~d--------~~~~l~ei~rvLkpGG~l~i~d~~~--~~~~~~~~ 193 (261)
T PLN02233 132 IEG---DATDL-----PFDDCYFDAITMGYGLRNVVD--------RLKAMQEMYRVLKPGSRVSILDFNK--STQPFTTS 193 (261)
T ss_pred EEc---ccccC-----CCCCCCEeEEEEecccccCCC--------HHHHHHHHHHHcCcCcEEEEEECCC--CCcHHHHH
Confidence 321 22332 233333334445566888643 345565 457789974 34554432 23345555
Q ss_pred HH
Q 009607 404 FT 405 (531)
Q Consensus 404 F~ 405 (531)
+.
T Consensus 194 ~~ 195 (261)
T PLN02233 194 MQ 195 (261)
T ss_pred HH
Confidence 43
No 8
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=93.96 E-value=2.9 Score=41.83 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=62.7
Q ss_pred HHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEE
Q 009607 247 QAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFR 326 (531)
Q Consensus 247 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~ 326 (531)
+.+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..++|||+... ..+ +.|+..++.|.-
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~----~~~--------~~a~~~~~~~~~- 78 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSP----EMV--------AAARERGVDART- 78 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCH----HHH--------HHHHhcCCcEEE-
Confidence 356777765566789999999984 556677663 345899998742 223 334444655421
Q ss_pred EeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHH-HHHhcCCcEEEEEecCC
Q 009607 327 GVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLG-WIRNLNPKIMTVVEQES 393 (531)
Q Consensus 327 ~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~-~Ir~L~PkIvtlvEqEa 393 (531)
. ..+++.+. ..=+.|+.|. .||++.+ + +.+|+ ..+.|+|.-.+++....
T Consensus 79 ---~-d~~~~~~~----~~fD~v~~~~--~l~~~~d-------~-~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 79 ---G-DVRDWKPK----PDTDVVVSNA--ALQWVPE-------H-ADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred ---c-ChhhCCCC----CCceEEEEeh--hhhhCCC-------H-HHHHHHHHHhCCCCcEEEEEcCC
Confidence 1 22332110 1114555555 4688743 3 44555 45778999776665433
No 9
>PRK06202 hypothetical protein; Provisional
Probab=92.70 E-value=2.6 Score=41.49 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=56.4
Q ss_pred CCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCc
Q 009607 254 DGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRL 333 (531)
Q Consensus 254 ~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~l 333 (531)
...+...|+|+|.|.|. +...|.....+ ..|..+||||+... +.++...++. ...++.|.. ..+..+
T Consensus 57 ~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~----~~l~~a~~~~----~~~~~~~~~--~~~~~l 123 (232)
T PRK06202 57 SADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDP----RAVAFARANP----RRPGVTFRQ--AVSDEL 123 (232)
T ss_pred CCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCH----HHHHHHHhcc----ccCCCeEEE--Eecccc
Confidence 33456789999999996 33332222211 13457999998753 3444333221 123455544 222122
Q ss_pred ccccccccccCCC--CeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCcEEEEE
Q 009607 334 EDVKPWMLQVSPK--EALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVV 389 (531)
Q Consensus 334 edl~~~~L~i~~g--EaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~PkIvtlv 389 (531)
.. .++ +.|+.| +.|||+.+ ..+..+|+.+.++.-..+++.
T Consensus 124 ~~--------~~~~fD~V~~~--~~lhh~~d------~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 124 VA--------EGERFDVVTSN--HFLHHLDD------AEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred cc--------cCCCccEEEEC--CeeecCCh------HHHHHHHHHHHHhcCeeEEEe
Confidence 11 122 344444 45899855 235678887766554555543
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=92.28 E-value=0.56 Score=42.25 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=24.7
Q ss_pred CCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 255 GHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 255 g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
..+.-.|+|+|.|.| .| .+.|+.+ |. ++||+++.
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~ 53 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDIS 53 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESS
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECC
Confidence 456679999999999 44 5555554 32 99999875
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=91.89 E-value=3.9 Score=41.49 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce
Q 009607 243 FTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR 322 (531)
Q Consensus 243 ftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp 322 (531)
+-+.+.|++.+.-.+.-+|+|+|.+.|.-- ..|+.+.+ .++|||+... ..++...++... .-.
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~~----~~v~giD~s~----~~~~~a~~~~~~-----~~~ 100 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKYG----AHVHGVDICE----KMVNIAKLRNSD-----KNK 100 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhcC----CEEEEEECCH----HHHHHHHHHcCc-----CCc
Confidence 345677778776666778999999998732 33444432 4899998642 334444333221 112
Q ss_pred EEEEEeccCCcccccccccccCCC--CeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEE
Q 009607 323 FTFRGVAASRLEDVKPWMLQVSPK--EALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVV 389 (531)
Q Consensus 323 FeF~~v~~~~ledl~~~~L~i~~g--EaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlv 389 (531)
.+|... ...+ ....++ +.|.. ...+||+.. ..+..+|+.+ +.|+|.-.+++
T Consensus 101 i~~~~~---D~~~-----~~~~~~~FD~V~s--~~~l~h~~~------~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 101 IEFEAN---DILK-----KDFPENTFDMIYS--RDAILHLSY------ADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred eEEEEC---Cccc-----CCCCCCCeEEEEE--hhhHHhCCH------HHHHHHHHHHHHHcCCCcEEEE
Confidence 334321 1111 111222 33333 334566532 2466777666 66899866554
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=91.53 E-value=0.47 Score=47.61 Aligned_cols=182 Identities=20% Similarity=0.201 Sum_probs=66.3
Q ss_pred HHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEE
Q 009607 248 AILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRG 327 (531)
Q Consensus 248 AILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~ 327 (531)
.+++.+...+--+|+|.+.|.|--+..| +.+. +|.-+|||++... ..|+...+|+.+.... ..+|..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~--~~~~~v~~vD~s~----~ML~~a~~k~~~~~~~---~i~~v~ 104 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRV--GPNGKVVGVDISP----GMLEVARKKLKREGLQ---NIEFVQ 104 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGS--S---EEEEEES-H----HHHHHHHHHHHHTT-----SEEEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHC--CCccEEEEecCCH----HHHHHHHHHHHhhCCC---CeeEEE
Confidence 3455556666779999999999655444 4332 2445999998753 5677777776654333 334422
Q ss_pred eccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHH-HHHhcCCcE-EEEEecCCCCCCcchHHHHH
Q 009607 328 VAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLG-WIRNLNPKI-MTVVEQESNHNQPEFLDRFT 405 (531)
Q Consensus 328 v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~-~Ir~L~PkI-vtlvEqEanhN~p~F~~RF~ 405 (531)
. ..++ |.+.++..=+|-|.|.||++.+ ++..|+ ..|-|+|.- ++++|-.-..| .++.
T Consensus 105 --~-da~~-----lp~~d~sfD~v~~~fglrn~~d--------~~~~l~E~~RVLkPGG~l~ile~~~p~~--~~~~--- 163 (233)
T PF01209_consen 105 --G-DAED-----LPFPDNSFDAVTCSFGLRNFPD--------RERALREMYRVLKPGGRLVILEFSKPRN--PLLR--- 163 (233)
T ss_dssp ----BTTB-------S-TT-EEEEEEES-GGG-SS--------HHHHHHHHHHHEEEEEEEEEEEEEB-SS--HHHH---
T ss_pred --c-CHHH-----hcCCCCceeEEEHHhhHHhhCC--------HHHHHHHHHHHcCCCeEEEEeeccCCCC--chhh---
Confidence 2 2222 4455666778888999999865 455665 557789965 34555433222 2333
Q ss_pred HHHHHHHHHhhhhhcCCCCHHHHHHHHHHhhhhhhhhhccCCCccccccchhhHHHHHhcCCceeccCChH
Q 009607 406 TALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSN 476 (531)
Q Consensus 406 eAL~yYsalFDSLea~~~s~er~~~E~~lgreI~NiVAcEG~~RvERhE~~~~Wr~rm~~AGF~~vpls~~ 476 (531)
....+|...+==+=+..-..++. .=.||.+-|.+. .+.++-.+.|+.+||+.|....-
T Consensus 164 ~~~~~y~~~ilP~~g~l~~~~~~-~Y~yL~~Si~~f------------~~~~~~~~~l~~~Gf~~v~~~~~ 221 (233)
T PF01209_consen 164 ALYKFYFKYILPLIGRLLSGDRE-AYRYLPESIRRF------------PSPEELKELLEEAGFKNVEYRPL 221 (233)
T ss_dssp HHHHH------------------------------------------------------------------
T ss_pred ceeeeeecccccccccccccccc-cccccccccccc------------ccccccccccccccccccccccc
Confidence 33334444322111111111110 013555555543 33345677889999988765443
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=91.49 E-value=7.5 Score=39.52 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=110.9
Q ss_pred hCChhhhH-HHHHHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHH
Q 009607 234 ACPYLKFA-HFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRL 312 (531)
Q Consensus 234 ~~P~~kFa-hftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL 312 (531)
..+++.|+ |.+=+++..+.+.-.+--+|+|.+.|-|- | .-.|+.+-| .-+|||++... ..|+...+|+
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd-~---a~~~~k~~g---~g~v~~~D~s~----~ML~~a~~k~ 95 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD-M---ALLLAKSVG---TGEVVGLDISE----SMLEVAREKL 95 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH-H---HHHHHHhcC---CceEEEEECCH----HHHHHHHHHh
Confidence 45666666 35667777776654467899999998873 2 333444433 67999998753 5566666555
Q ss_pred HHHHHhCCce-EEEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEe
Q 009607 313 AELARSVNIR-FTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVE 390 (531)
Q Consensus 313 ~~fA~~lgvp-FeF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvE 390 (531)
.+. |+. ++| |.+ +++.|...+.-.=+|-+.|.||++.+ ++.+|+-+ |=|+|...+++-
T Consensus 96 ~~~----~~~~i~f--v~~------dAe~LPf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 96 KKK----GVQNVEF--VVG------DAENLPFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hcc----CccceEE--EEe------chhhCCCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcCCeEEEEE
Confidence 442 322 555 333 22334556666667888889999865 77888765 668999876555
Q ss_pred cCCCCCCcchHHHHHHHHH-HHHH-HhhhhhcCCC-CHHHHHHHHHHhhhhhhhhhccCCCccccccchhhHHHHHhcCC
Q 009607 391 QESNHNQPEFLDRFTTALY-YYST-MFDSLEACPL-QPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAG 467 (531)
Q Consensus 391 qEanhN~p~F~~RF~eAL~-yYsa-lFDSLea~~~-s~er~~~E~~lgreI~NiVAcEG~~RvERhE~~~~Wr~rm~~AG 467 (531)
.=.....+.|. ..++ ||.. ++=.+..... ..+- -.||-.- ++++...+.-...|+.+|
T Consensus 156 e~~~p~~~~~~----~~~~~~~~~~v~P~~g~~~~~~~~~---y~yL~eS------------i~~~p~~~~l~~~~~~~g 216 (238)
T COG2226 156 EFSKPDNPVLR----KAYILYYFKYVLPLIGKLVAKDAEA---YEYLAES------------IRRFPDQEELKQMIEKAG 216 (238)
T ss_pred EcCCCCchhhH----HHHHHHHHHhHhhhhceeeecChHH---HHHHHHH------------HHhCCCHHHHHHHHHhcC
Confidence 44444444332 3333 4433 4333333221 1110 0223222 345556667777888899
Q ss_pred ceecc
Q 009607 468 FRPLH 472 (531)
Q Consensus 468 F~~vp 472 (531)
|..+.
T Consensus 217 f~~i~ 221 (238)
T COG2226 217 FEEVR 221 (238)
T ss_pred ceEEe
Confidence 98765
No 14
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=90.31 E-value=9.6 Score=41.69 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=62.8
Q ss_pred HHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEE
Q 009607 246 NQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTF 325 (531)
Q Consensus 246 NqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF 325 (531)
...+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+... ..++...++ +...+...+|
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~----~~l~~A~~~----~~~~~~~v~~ 318 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSV----NMISFALER----AIGRKCSVEF 318 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCH----HHHHHHHHH----hhcCCCceEE
Confidence 3556666544445689999999985 3455676653 3899998752 344444332 2233444555
Q ss_pred EEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEe
Q 009607 326 RGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVE 390 (531)
Q Consensus 326 ~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvE 390 (531)
... .+.++. +.++..=+|-|...++|+.+ .+.+|+.+ |.|+|.-.+++.
T Consensus 319 ~~~---d~~~~~-----~~~~~fD~I~s~~~l~h~~d--------~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 319 EVA---DCTKKT-----YPDNSFDVIYSRDTILHIQD--------KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEc---CcccCC-----CCCCCEEEEEECCcccccCC--------HHHHHHHHHHHcCCCeEEEEE
Confidence 432 122211 11222333344445677643 34566544 678999886655
No 15
>PRK08317 hypothetical protein; Provisional
Probab=90.01 E-value=14 Score=35.39 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=28.9
Q ss_pred HHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 249 ILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 249 ILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
+++.+.-.+.-+|+|+|.|.|. |. ..++.+. +|.-++|||+..
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~~ 53 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDRS 53 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeCC
Confidence 5666666666789999999874 33 3344332 245699999864
No 16
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=89.68 E-value=19 Score=34.25 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 244 TANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 244 tANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
..-+.+++.+.-.+...|+|+|.+.|. +...++.+ +|+..++|+|+..
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~ 73 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFS 73 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECC
Confidence 334556666665567799999999985 23334433 2344789999864
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=89.25 E-value=15 Score=35.35 Aligned_cols=43 Identities=19% Similarity=0.061 Sum_probs=27.2
Q ss_pred HHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 249 ILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 249 ILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
+++.+.-.+..+|+|+|.+.|. +...++.+ +|+..++|+++..
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s 85 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFS 85 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCC
Confidence 3444443445789999999985 23333333 2346899999874
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=89.24 E-value=5.9 Score=41.82 Aligned_cols=152 Identities=17% Similarity=0.131 Sum_probs=79.3
Q ss_pred eEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCc--eEEEEEeccCCcccc
Q 009607 259 VHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNI--RFTFRGVAASRLEDV 336 (531)
Q Consensus 259 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgv--pFeF~~v~~~~ledl 336 (531)
-.|+|+|.|.|. +...||. .| .++|||+... ..++...++ ++..++ ..+|..- +.+++
T Consensus 133 ~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~s~----~~i~~Ar~~----~~~~~~~~~i~~~~~---dae~l 192 (322)
T PLN02396 133 LKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDAVD----KNVKIARLH----ADMDPVTSTIEYLCT---TAEKL 192 (322)
T ss_pred CEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeCCH----HHHHHHHHH----HHhcCcccceeEEec---CHHHh
Confidence 479999999997 4556664 33 4899998652 334333322 222121 3444322 23333
Q ss_pred cccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHH-hcCCcEEEEEecCCCCCCcchHHHHHHHHHHHHHHh
Q 009607 337 KPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIR-NLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMF 415 (531)
Q Consensus 337 ~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir-~L~PkIvtlvEqEanhN~p~F~~RF~eAL~yYsalF 415 (531)
.. .++..=+|-|..-|||+.+ .+.+|+.++ -|+|.-.+++..- |.+.. .|...++
T Consensus 193 ~~-----~~~~FD~Vi~~~vLeHv~d--------~~~~L~~l~r~LkPGG~liist~-nr~~~----------~~~~~i~ 248 (322)
T PLN02396 193 AD-----EGRKFDAVLSLEVIEHVAN--------PAEFCKSLSALTIPNGATVLSTI-NRTMR----------AYASTIV 248 (322)
T ss_pred hh-----ccCCCCEEEEhhHHHhcCC--------HHHHHHHHHHHcCCCcEEEEEEC-CcCHH----------HHHHhhh
Confidence 21 1222333444556899865 356777664 4699877665521 21110 1111110
Q ss_pred hhhhcCCCCHHHHHHHHHHhhhhhhhhhccCCCccccccchhhHHHHHhcCCceeccC
Q 009607 416 DSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHL 473 (531)
Q Consensus 416 DSLea~~~s~er~~~E~~lgreI~NiVAcEG~~RvERhE~~~~Wr~rm~~AGF~~vpl 473 (531)
....|.+.+- .|.....+.-+.+.++..++++||+.+.+
T Consensus 249 ------------------~~eyi~~~lp-~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 249 ------------------GAEYILRWLP-KGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred ------------------hHHHHHhcCC-CCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 0111222222 34444455567788899999999987654
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=87.78 E-value=1.6 Score=37.24 Aligned_cols=105 Identities=27% Similarity=0.221 Sum_probs=59.4
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCccccccc
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPW 339 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~ 339 (531)
+|+|+|.+.|. +...|+.+ -|..|+|||+.. ...++...++..+....-+|.|.-.- + . .
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~---~~~~~v~gvD~s----~~~~~~a~~~~~~~~~~~~i~~~~~d-----~-~---~ 63 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARL---FPGARVVGVDIS----PEMLEIARERAAEEGLSDRITFVQGD-----A-E---F 63 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHH---HTTSEEEEEESS----HHHHHHHHHHHHHTTTTTTEEEEESC-----C-H---G
T ss_pred EEEEEcCcCCH----HHHHHHhc---CCCCEEEEEeCC----HHHHHHHHHHHHhcCCCCCeEEEECc-----c-c---c
Confidence 68999999985 33444432 134589999874 35667666666443333344433322 2 0 0
Q ss_pred ccccCC-CCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEe
Q 009607 340 MLQVSP-KEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVE 390 (531)
Q Consensus 340 ~L~i~~-gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvE 390 (531)
...... =+.|+.+. +.+|+++. . ..+..+|+.+ +.|+|.-+++++
T Consensus 64 ~~~~~~~~D~v~~~~-~~~~~~~~----~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 64 DPDFLEPFDLVICSG-FTLHFLLP----L-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GTTTSSCEEEEEECS-GSGGGCCH----H-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccCCCCCEEEECC-Cccccccc----h-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 011111 14566666 56666654 1 3466778766 567998887765
No 20
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=86.75 E-value=5.6 Score=41.90 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=57.8
Q ss_pred ceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHH-hC-CceEEEEEeccCCcc
Q 009607 257 DCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELAR-SV-NIRFTFRGVAASRLE 334 (531)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~-~l-gvpFeF~~v~~~~le 334 (531)
+...|+|+|.|.|. +...|+.+ | .++|||+... ..++...++..+.-. .. +...+|... .++
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~----~ml~~A~~~~~~~~~~~~~~~~~~f~~~---Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISA----AMVAEAERRAKEALAALPPEVLPKFEAN---DLE 207 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCH----HHHHHHHHHHHhcccccccccceEEEEc---chh
Confidence 45689999999886 44556654 3 3899998653 456555554432100 01 233455432 233
Q ss_pred cccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCcEEEEE
Q 009607 335 DVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVV 389 (531)
Q Consensus 335 dl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~PkIvtlv 389 (531)
+++ ..+ + +|| |...|||+.+ .....+++.++++.|+.+++.
T Consensus 208 ~l~-~~f-----D-~Vv-~~~vL~H~p~------~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 208 SLS-GKY-----D-TVT-CLDVLIHYPQ------DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hcC-CCc-----C-EEE-EcCEEEecCH------HHHHHHHHHHHhhcCCEEEEE
Confidence 321 111 2 222 4444677654 345678888888888877763
No 21
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=85.87 E-value=5.2 Score=41.06 Aligned_cols=138 Identities=18% Similarity=0.250 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhhCC----CceeEEEEcccCCCC-chHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 009607 241 AHFTANQAILEAFDG----HDCVHVVDFNLMHGL-QWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAEL 315 (531)
Q Consensus 241 ahftANqAILEA~~g----~~~VHIIDf~I~~G~-QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~f 315 (531)
+++++-..||+.+.. -+--+|+|||-|-|. =|.. .+.+ +-..++|.|+.. ..+.++|++|.+-
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~s-----~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDRS-----PEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecCC-----HHHHHHHHHHHhc
Confidence 566777778887753 345599999999874 3322 2222 135689999864 3566788877653
Q ss_pred HHhCCceEEEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEecCCC
Q 009607 316 ARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVEQESN 394 (531)
Q Consensus 316 A~~lgvpFeF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvEqEan 394 (531)
...... .+.+.. +......+.+.+-|++. +.|-.|.+ ..+..+++.+ +.++| ++|+||....
T Consensus 81 ~~~~~~-~~~~~~-------~~~~~~~~~~~DLvi~s--~~L~EL~~------~~r~~lv~~LW~~~~~-~LVlVEpGt~ 143 (274)
T PF09243_consen 81 GPNNRN-AEWRRV-------LYRDFLPFPPDDLVIAS--YVLNELPS------AARAELVRSLWNKTAP-VLVLVEPGTP 143 (274)
T ss_pred cccccc-chhhhh-------hhcccccCCCCcEEEEe--hhhhcCCc------hHHHHHHHHHHHhccC-cEEEEcCCCh
Confidence 322111 111111 11111222222333322 12333322 5677888877 55666 8888887665
Q ss_pred CCCcchHHHHHHHH
Q 009607 395 HNQPEFLDRFTTAL 408 (531)
Q Consensus 395 hN~p~F~~RF~eAL 408 (531)
.+-.++.+.++.|
T Consensus 144 -~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 144 -AGFRRIAEARDQL 156 (274)
T ss_pred -HHHHHHHHHHHHH
Confidence 3445666666655
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=85.14 E-value=9.1 Score=41.86 Aligned_cols=137 Identities=14% Similarity=0.126 Sum_probs=71.0
Q ss_pred HHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEE
Q 009607 247 QAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFR 326 (531)
Q Consensus 247 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~ 326 (531)
..|++.+...+.-+|+|+|.|.|.-- ..|+.+ ++ ++|||+... ..++.. .++ .. ..-..+|.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~-~~----~v~giD~s~----~~l~~a-~~~---~~-~~~~i~~~ 88 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKK-AG----QVIALDFIE----SVIKKN-ESI---NG-HYKNVKFM 88 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhh-CC----EEEEEeCCH----HHHHHH-HHH---hc-cCCceEEE
Confidence 45666666544448999999999544 445544 21 899998642 334322 111 11 11123332
Q ss_pred EeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEecCCCCC--------C
Q 009607 327 GVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVEQESNHN--------Q 397 (531)
Q Consensus 327 ~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvEqEanhN--------~ 397 (531)
.. ...+. .+...++..=+|-|.+.|||+.+ ..+..+|+.+ |-|+|.-.++....+-++ .
T Consensus 89 ~~---d~~~~---~~~~~~~~fD~I~~~~~l~~l~~------~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~ 156 (475)
T PLN02336 89 CA---DVTSP---DLNISDGSVDLIFSNWLLMYLSD------KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNN 156 (475)
T ss_pred Ee---ccccc---ccCCCCCCEEEEehhhhHHhCCH------HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCC
Confidence 21 11111 11222333334445567899854 3466788766 448999876654333222 2
Q ss_pred cchHHHHHHHHHHHHHHhhh
Q 009607 398 PEFLDRFTTALYYYSTMFDS 417 (531)
Q Consensus 398 p~F~~RF~eAL~yYsalFDS 417 (531)
|++. -...+|..+|..
T Consensus 157 ~~~~----~~~~~~~~~f~~ 172 (475)
T PLN02336 157 PTHY----REPRFYTKVFKE 172 (475)
T ss_pred CCee----cChHHHHHHHHH
Confidence 2332 125577777766
No 23
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=84.74 E-value=1.5 Score=44.66 Aligned_cols=53 Identities=13% Similarity=0.004 Sum_probs=36.5
Q ss_pred CCCceeEEEEcccCCCCchHHHHHHHhcCCC--CCCeEEEEEeCCCCCCChhHHHHHHH
Q 009607 254 DGHDCVHVVDFNLMHGLQWPALIQALALRPG--GPPLLRLTGIGPPSPDGRDSLREIGL 310 (531)
Q Consensus 254 ~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~g--GPP~LRITgI~~p~~~~~~~L~etG~ 310 (531)
...+.++|.|.|.+.|--.-+|--.|+..-. ..+.++|+|++... ..|+.+.+
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~----~~L~~Ar~ 150 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL----KALEKARA 150 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH----HHHHHHHc
Confidence 3456799999999999887777655654321 23478999998753 45555544
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=82.88 E-value=6.7 Score=37.84 Aligned_cols=111 Identities=13% Similarity=0.154 Sum_probs=64.3
Q ss_pred HHHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceE
Q 009607 244 TANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRF 323 (531)
Q Consensus 244 tANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpF 323 (531)
++...|++++.-.+.-+|+|+|.|.|.--. .||.+ | .++|||+... ..++.+ .+.++.-|++.
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s~----~~l~~a----~~~~~~~~~~v 79 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHNP----ASIASV----LDMKARENLPL 79 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECCH----HHHHHH----HHHHHHhCCCc
Confidence 567788888876666799999999987433 34444 3 4899998642 333333 34455556664
Q ss_pred EEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEE
Q 009607 324 TFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIM 386 (531)
Q Consensus 324 eF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIv 386 (531)
.+.... +.... +. ..=+.|+.+.+ +|++.. ..++.+++.+ |.|+|.-.
T Consensus 80 ~~~~~d---~~~~~---~~-~~fD~I~~~~~--~~~~~~------~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 80 RTDAYD---INAAA---LN-EDYDFIFSTVV--FMFLQA------GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred eeEecc---chhcc---cc-CCCCEEEEecc--cccCCH------HHHHHHHHHHHHHhCCCcE
Confidence 443221 11111 11 01144444443 576632 4567788766 66799975
No 25
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=82.81 E-value=8.5 Score=39.43 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=54.9
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCccccccc
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPW 339 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~ 339 (531)
+|+|+|.|.|. +...||.+ | .++|||+... ..++ .+.+.|+..++.+++... .+++..
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s~----~ai~----~~~~~~~~~~l~v~~~~~---D~~~~~-- 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDINQ----QSLE----NLQEIAEKENLNIRTGLY---DINSAS-- 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECCH----HHHH----HHHHHHHHcCCceEEEEe---chhccc--
Confidence 89999999986 34445654 2 5899998642 3333 334556666776666432 122111
Q ss_pred ccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEE
Q 009607 340 MLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIM 386 (531)
Q Consensus 340 ~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIv 386 (531)
+. ..=+.|+.+.+ ||++.. ..+..+|+.+ +.|+|.-+
T Consensus 181 -~~-~~fD~I~~~~v--l~~l~~------~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 181 -IQ-EEYDFILSTVV--LMFLNR------ERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred -cc-CCccEEEEcch--hhhCCH------HHHHHHHHHHHHhcCCCcE
Confidence 10 01144554544 677632 4567788766 66799766
No 26
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=82.13 E-value=1.6 Score=37.08 Aligned_cols=97 Identities=28% Similarity=0.343 Sum_probs=51.9
Q ss_pred EEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCcccccccc
Q 009607 261 VVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWM 340 (531)
Q Consensus 261 IIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~~ 340 (531)
|+|+|.|.|.-=..|.+.+ .. | |..++|||+... ..++.+.++..+ .+++.+|. .. ...++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~--~~-~-~~~~~~gvD~s~----~~l~~~~~~~~~----~~~~~~~~--~~-D~~~l~--- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF--DA-G-PSSRVIGVDISP----EMLELAKKRFSE----DGPKVRFV--QA-DARDLP--- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-H----HHHHHHHHHSHH----TTTTSEEE--ES-CTTCHH---
T ss_pred CEEeecCCcHHHHHHHHHh--hh-c-ccceEEEEECCH----HHHHHHHHhchh----cCCceEEE--EC-CHhHCc---
Confidence 7999999997766666665 11 2 568999998642 455554443333 45566663 22 333332
Q ss_pred cccCCCCe-EEeehHHHhhhhcCCCCCCCChHHHHHHHHHh-cCC
Q 009607 341 LQVSPKEA-LAVNSILQLHKLLGSDPARNSPMEMVLGWIRN-LNP 383 (531)
Q Consensus 341 L~i~~gEa-LaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~-L~P 383 (531)
...+.. +||.+...+||+.+ ..+..+|+.+.+ ++|
T Consensus 63 --~~~~~~D~v~~~~~~~~~~~~------~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 63 --FSDGKFDLVVCSGLSLHHLSP------EELEALLRRIARLLRP 99 (101)
T ss_dssp --HHSSSEEEEEE-TTGGGGSSH------HHHHHHHHHHHHTEEE
T ss_pred --ccCCCeeEEEEcCCccCCCCH------HHHHHHHHHHHHHhCC
Confidence 122222 44443444788633 567888877654 355
No 27
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=81.54 E-value=5.8 Score=42.10 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=65.8
Q ss_pred ceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhC---CceEEEEEe--ccC
Q 009607 257 DCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSV---NIRFTFRGV--AAS 331 (531)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~l---gvpFeF~~v--~~~ 331 (531)
+..+|+|++.|.|.= |.+-...+ .=++.||+.. ...++++.+|..+.-+.. ...+.|... ..+
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~~-----i~~~vg~Dis----~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D 129 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKAK-----IKHYVGIDIS----EESIEEARERYKQLKKRNNSKQYRFDFIAEFIAAD 129 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHTT------SEEEEEES-----HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEEST
T ss_pred CCCeEEEecCCCchh---HHHHHhcC-----CCEEEEEeCC----HHHHHHHHHHHHHhccccccccccccchhheeccc
Confidence 678999999998852 22222222 2377888765 378999999986665432 223333322 222
Q ss_pred CcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEE
Q 009607 332 RLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTV 388 (531)
Q Consensus 332 ~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtl 388 (531)
....--...+.-..+..=+|+|.|.||+... .......+|+.| +.|+|.-+.+
T Consensus 130 ~f~~~l~~~~~~~~~~FDvVScQFalHY~Fe----se~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 130 CFSESLREKLPPRSRKFDVVSCQFALHYAFE----SEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TCCSHHHCTSSSTTS-EEEEEEES-GGGGGS----SHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cccchhhhhccccCCCcceeehHHHHHHhcC----CHHHHHHHHHHHHHhcCCCCEEE
Confidence 1111001112222246779999999999987 345566677766 6689987643
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=81.42 E-value=4.5 Score=36.96 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=58.4
Q ss_pred CceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce-EEEEEeccCCcc
Q 009607 256 HDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR-FTFRGVAASRLE 334 (531)
Q Consensus 256 ~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp-FeF~~v~~~~le 334 (531)
.+..+|+|+|.|.|..= ..|+.+- .|..++|||+... ..++ +..+.++..+++ .+|..- +++
T Consensus 2 ~~~~~iLDlGcG~G~~~----~~l~~~~--~~~~~i~gvD~s~----~~i~----~a~~~~~~~~~~ni~~~~~---d~~ 64 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLL----IQLAKEL--NPGAKIIGVDISE----EMIE----YAKKRAKELGLDNIEFIQG---DIE 64 (152)
T ss_dssp TTTSEEEEET-TTSHHH----HHHHHHS--TTTSEEEEEESSH----HHHH----HHHHHHHHTTSTTEEEEES---BTT
T ss_pred CCCCEEEEecCcCcHHH----HHHHHhc--CCCCEEEEEECcH----HHHH----HhhcccccccccccceEEe---ehh
Confidence 35678999999998643 3344221 2345799997642 3333 344566677876 666542 444
Q ss_pred cccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHH-HHHhcCCcEEEEE
Q 009607 335 DVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLG-WIRNLNPKIMTVV 389 (531)
Q Consensus 335 dl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~-~Ir~L~PkIvtlv 389 (531)
++... +. ..=+.|..+.++ |++.+ .+.+|+ ..+.|+|+-++++
T Consensus 65 ~l~~~-~~-~~~D~I~~~~~l--~~~~~--------~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 65 DLPQE-LE-EKFDIIISNGVL--HHFPD--------PEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp CGCGC-SS-TTEEEEEEESTG--GGTSH--------HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccc-cC-CCeeEEEEcCch--hhccC--------HHHHHHHHHHHcCCCcEEEE
Confidence 44422 22 111455555554 66533 345555 4677888866543
No 29
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=81.32 E-value=49 Score=32.26 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=18.0
Q ss_pred cccchhhHHHHHhcCCceeccCC
Q 009607 452 RHEPLAKWRNRLAGAGFRPLHLG 474 (531)
Q Consensus 452 RhE~~~~Wr~rm~~AGF~~vpls 474 (531)
+.-+...|...+..+||+.+...
T Consensus 182 ~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 182 KFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hcCCHHHHHHHHHHCCCeEeeee
Confidence 34456789999999999988653
No 30
>PRK05785 hypothetical protein; Provisional
Probab=81.17 E-value=21 Score=35.41 Aligned_cols=94 Identities=16% Similarity=0.069 Sum_probs=50.2
Q ss_pred eeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCccccc
Q 009607 258 CVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVK 337 (531)
Q Consensus 258 ~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~ 337 (531)
.-.|+|+|.|.|.- ...|+.+.+ .++|||+... +.++....+ + + + +.. ..++
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S~----~Ml~~a~~~--------~-~--~--~~~-d~~~-- 103 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYAE----NMLKMNLVA--------D-D--K--VVG-SFEA-- 103 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCCH----HHHHHHHhc--------c-c--e--EEe-chhh--
Confidence 34799999999944 334554432 4899998752 334332211 1 1 1 111 2232
Q ss_pred ccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEec
Q 009607 338 PWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVEQ 391 (531)
Q Consensus 338 ~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvEq 391 (531)
+...++..=+|-|.+.||++.+ .+.+|+.+ |-|+|.++ ++|-
T Consensus 104 ---lp~~d~sfD~v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~-ile~ 146 (226)
T PRK05785 104 ---LPFRDKSFDVVMSSFALHASDN--------IEKVIAEFTRVSRKQVG-FIAM 146 (226)
T ss_pred ---CCCCCCCEEEEEecChhhccCC--------HHHHHHHHHHHhcCceE-EEEe
Confidence 2333443334444556788644 45677665 56789543 4443
No 31
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=81.09 E-value=14 Score=38.18 Aligned_cols=122 Identities=16% Similarity=0.079 Sum_probs=71.6
Q ss_pred HHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEE
Q 009607 248 AILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRG 327 (531)
Q Consensus 248 AILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~ 327 (531)
.|.+++. ....|||+|.|.|.-=..|+++|.. ..++|||+.+. +.|+.+.++|.+- --++++++
T Consensus 56 ~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~----~mL~~a~~~l~~~--~p~~~v~~-- 119 (301)
T TIGR03438 56 EIAAATG--AGCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISA----DALKESAAALAAD--YPQLEVHG-- 119 (301)
T ss_pred HHHHhhC--CCCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCH----HHHHHHHHHHHhh--CCCceEEE--
Confidence 3555553 2347999999999777778887742 36899998763 6778888777641 13455444
Q ss_pred eccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEecC
Q 009607 328 VAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVEQE 392 (531)
Q Consensus 328 v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvEqE 392 (531)
+.. ...+.....-....+..+++.+...+|++.. .....+|+.| +.|+|.-..++.-+
T Consensus 120 i~g-D~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~------~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 120 ICA-DFTQPLALPPEPAAGRRLGFFPGSTIGNFTP------EEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EEE-cccchhhhhcccccCCeEEEEecccccCCCH------HHHHHHHHHHHHhcCCCCEEEEecc
Confidence 332 2221100000011124666766566777632 4466788877 56899766655443
No 32
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=80.59 E-value=35 Score=32.69 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=55.7
Q ss_pred HHHHHhhhCC---CceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce
Q 009607 246 NQAILEAFDG---HDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR 322 (531)
Q Consensus 246 NqAILEA~~g---~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp 322 (531)
.+.+++.+.. .+..+|+|+|.|.|.- ...|+.+ + |..++|||+... ..++....++. -++
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~----~~~l~~~--~-~~~~~~~~D~~~----~~~~~~~~~~~-----~~~- 82 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYL----TRALLKR--F-PQAEFIALDISA----GMLAQAKTKLS-----ENV- 82 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHH----HHHHHHh--C-CCCcEEEEeChH----HHHHHHHHhcC-----CCC-
Confidence 3334444443 2346899999999963 3333433 2 456799998642 33333333322 022
Q ss_pred EEEEEeccCCcccccccccccCCC--CeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEe
Q 009607 323 FTFRGVAASRLEDVKPWMLQVSPK--EALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVE 390 (531)
Q Consensus 323 FeF~~v~~~~ledl~~~~L~i~~g--EaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvE 390 (531)
+| +.. .++++. ..++ +.|+ +.+.||++.+ ...+|..+ +.|+|.-++++.
T Consensus 83 -~~--~~~-d~~~~~-----~~~~~fD~vi--~~~~l~~~~~--------~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 83 -QF--ICG-DAEKLP-----LEDSSFDLIV--SNLALQWCDD--------LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred -eE--Eec-chhhCC-----CCCCceeEEE--EhhhhhhccC--------HHHHHHHHHHHcCCCcEEEEE
Confidence 23 222 233322 1122 3443 3445777633 34567665 557998766654
No 33
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=79.18 E-value=30 Score=34.40 Aligned_cols=114 Identities=22% Similarity=0.206 Sum_probs=62.7
Q ss_pred HHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEE
Q 009607 245 ANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFT 324 (531)
Q Consensus 245 ANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFe 324 (531)
-+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++||+... ..++...+++ -+ .+
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~----~~i~~a~~~~------~~--~~ 79 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSP----AMLAEARSRL------PD--CQ 79 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCH----HHHHHHHHhC------CC--Ce
Confidence 35567777765666789999999983 345566553 335999998652 3333333221 12 33
Q ss_pred EEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHH-HHHhcCCcEEEEEecCCC
Q 009607 325 FRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLG-WIRNLNPKIMTVVEQESN 394 (531)
Q Consensus 325 F~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~-~Ir~L~PkIvtlvEqEan 394 (531)
|... ..+++.+. ..=+.|+.| +.||++.+ . ..+|+ ..+.|+|.-.+++....+
T Consensus 80 ~~~~---d~~~~~~~----~~fD~v~~~--~~l~~~~d-------~-~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 80 FVEA---DIASWQPP----QALDLIFAN--ASLQWLPD-------H-LELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred EEEC---chhccCCC----CCccEEEEc--cChhhCCC-------H-HHHHHHHHHhcCCCcEEEEECCCC
Confidence 4321 22222111 111344444 45687644 2 34554 457789998877764333
No 34
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=77.87 E-value=17 Score=35.40 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHhhhC--CCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHH
Q 009607 239 KFAHFTANQAILEAFD--GHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELA 316 (531)
Q Consensus 239 kFahftANqAILEA~~--g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA 316 (531)
..+|-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+ + .++|||+... +.+....+++..
T Consensus 35 ~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~--~---~~v~gvD~s~----~~i~~a~~~~~~-- 99 (219)
T TIGR02021 35 REGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR--G---AIVKAVDISE----QMVQMARNRAQG-- 99 (219)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC--C---CEEEEEECCH----HHHHHHHHHHHh--
Confidence 3455666677777776 2456799999999985 55566654 1 3899998642 445444444432
Q ss_pred HhCCc--eEEEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHh-cCCcEEEE
Q 009607 317 RSVNI--RFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRN-LNPKIMTV 388 (531)
Q Consensus 317 ~~lgv--pFeF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~-L~PkIvtl 388 (531)
.++ ..+|... .++++. ..=+.|+. ...++|+.. ..+..+++.+.+ ++|.+++.
T Consensus 100 --~~~~~~i~~~~~---d~~~~~------~~fD~ii~--~~~l~~~~~------~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 100 --RDVAGNVEFEVN---DLLSLC------GEFDIVVC--MDVLIHYPA------SDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred --cCCCCceEEEEC---ChhhCC------CCcCEEEE--hhHHHhCCH------HHHHHHHHHHHHHhCCCEEEE
Confidence 232 3455322 233322 11133333 233566532 235667766654 56766654
No 35
>PLN02244 tocopherol O-methyltransferase
Probab=77.79 E-value=34 Score=36.11 Aligned_cols=99 Identities=15% Similarity=0.043 Sum_probs=53.8
Q ss_pred ceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCc--eEEEEEeccCCcc
Q 009607 257 DCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNI--RFTFRGVAASRLE 334 (531)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgv--pFeF~~v~~~~le 334 (531)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+... ..++.. .+.++..|+ ..+|..- ...
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~----~~i~~a----~~~~~~~g~~~~v~~~~~---D~~ 178 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSP----VQAARA----NALAAAQGLSDKVSFQVA---DAL 178 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCH----HHHHHH----HHHHHhcCCCCceEEEEc---Ccc
Confidence 34579999999885 4556666543 3899998642 223322 233444454 3555322 222
Q ss_pred cccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHH-HHhcCCcEEE
Q 009607 335 DVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGW-IRNLNPKIMT 387 (531)
Q Consensus 335 dl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~-Ir~L~PkIvt 387 (531)
++ ...++..=+|-|...+||+.+ ...+|+. .|-|+|.-.+
T Consensus 179 ~~-----~~~~~~FD~V~s~~~~~h~~d--------~~~~l~e~~rvLkpGG~l 219 (340)
T PLN02244 179 NQ-----PFEDGQFDLVWSMESGEHMPD--------KRKFVQELARVAAPGGRI 219 (340)
T ss_pred cC-----CCCCCCccEEEECCchhccCC--------HHHHHHHHHHHcCCCcEE
Confidence 22 122333333444556788754 3456654 5778996443
No 36
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=77.64 E-value=18 Score=34.96 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=61.5
Q ss_pred HHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce-E
Q 009607 245 ANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR-F 323 (531)
Q Consensus 245 ANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp-F 323 (531)
+++.+++.+...+.-.|+|+|.|.|. +...||.+ | .++|||+... ..++...+ .++..++. .
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S~----~~i~~a~~----~~~~~~~~~v 80 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKNP----MSIANLER----IKAAENLDNL 80 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCCH----HHHHHHHH----HHHHcCCCcc
Confidence 45566666665555689999999987 33445655 2 3899998642 33443332 23334543 3
Q ss_pred EEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEE
Q 009607 324 TFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTV 388 (531)
Q Consensus 324 eF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtl 388 (531)
++.. . .+.++. +. ..=+.|+.+.+ +|++.. ..+..+++.+ +.|+|.-.++
T Consensus 81 ~~~~--~-d~~~~~---~~-~~fD~I~~~~~--~~~~~~------~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 81 HTAV--V-DLNNLT---FD-GEYDFILSTVV--LMFLEA------KTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred eEEe--c-ChhhCC---cC-CCcCEEEEecc--hhhCCH------HHHHHHHHHHHHHcCCCcEEE
Confidence 3322 1 233322 11 11144554443 576532 4567777766 6679998643
No 37
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=77.35 E-value=45 Score=31.85 Aligned_cols=40 Identities=25% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 248 AILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 248 AILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
.|.+.+... -+|+|+|.|.|. +++.|+.+.+ .+++||+..
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s 45 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEID 45 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCC
Confidence 455555433 379999999995 5566765532 356899754
No 38
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=75.65 E-value=35 Score=33.41 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=55.4
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCccccccc
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPW 339 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~ 339 (531)
.|+|+|.|.|..-..|.+ +. |..++|||+... ..++.+.+++ -++.+ .. . .+.+ +
T Consensus 46 ~VLDiGCG~G~~~~~L~~----~~---~~~~v~giDiS~----~~l~~A~~~~------~~~~~--~~--~-d~~~--~- 100 (204)
T TIGR03587 46 SILELGANIGMNLAALKR----LL---PFKHIYGVEINE----YAVEKAKAYL------PNINI--IQ--G-SLFD--P- 100 (204)
T ss_pred cEEEEecCCCHHHHHHHH----hC---CCCeEEEEECCH----HHHHHHHhhC------CCCcE--EE--e-eccC--C-
Confidence 499999999965544433 31 235899998652 4454443322 12322 21 1 1111 1
Q ss_pred ccccCCC--CeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCcEEEEEecCC
Q 009607 340 MLQVSPK--EALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQES 393 (531)
Q Consensus 340 ~L~i~~g--EaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~PkIvtlvEqEa 393 (531)
..++ +.|+.|. .|||+. +..+..+++.+.+..-+.++++|-..
T Consensus 101 ---~~~~sfD~V~~~~--vL~hl~------p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 101 ---FKDNFFDLVLTKG--VLIHIN------PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---CCCCCEEEEEECC--hhhhCC------HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 1122 3444444 467762 35677888888777778888888754
No 39
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=71.94 E-value=35 Score=34.08 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=59.8
Q ss_pred HHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce--EE
Q 009607 247 QAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR--FT 324 (531)
Q Consensus 247 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp--Fe 324 (531)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ + .++|||+... ..++...++ ++..|+. .+
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s~----~~l~~a~~~----~~~~g~~~~v~ 96 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLSA----EMIQRAKQA----AEAKGVSDNMQ 96 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECCH----HHHHHHHHH----HHhcCCccceE
Confidence 34677665 344699999999993 45566655 2 4899998642 445544443 3334543 33
Q ss_pred EEEeccCCcccccccccccCCC--CeEEeehHHHhhhhcCCCCCCCChHHHHHH-HHHhcCCcEEEEE
Q 009607 325 FRGVAASRLEDVKPWMLQVSPK--EALAVNSILQLHKLLGSDPARNSPMEMVLG-WIRNLNPKIMTVV 389 (531)
Q Consensus 325 F~~v~~~~ledl~~~~L~i~~g--EaLaVN~~f~LH~L~~e~~~~~~~~~~vL~-~Ir~L~PkIvtlv 389 (531)
|. .. ..+++.+ ..++ ..|+ |...||++.+ +. .+|. ..+-|+|.-.+++
T Consensus 97 ~~--~~-d~~~l~~----~~~~~fD~V~--~~~vl~~~~~-------~~-~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 97 FI--HC-AAQDIAQ----HLETPVDLIL--FHAVLEWVAD-------PK-SVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EE--Ec-CHHHHhh----hcCCCCCEEE--ehhHHHhhCC-------HH-HHHHHHHHHcCCCeEEEE
Confidence 42 22 2233221 1122 3333 4455788743 33 4554 4567899877654
No 40
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=71.01 E-value=14 Score=37.69 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=63.7
Q ss_pred ceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCcccc
Q 009607 257 DCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDV 336 (531)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl 336 (531)
...-|.|+|.|-| .|-+.||.. | .++|||+... ..++... ..|.+-|+..+|..... |++
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se----~~I~~Ak----~ha~e~gv~i~y~~~~~---edl 118 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASE----KPIEVAK----LHALESGVNIDYRQATV---EDL 118 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCCh----HHHHHHH----HhhhhccccccchhhhH---HHH
Confidence 3457899999998 678888854 3 7999998642 2233222 44566788888876644 444
Q ss_pred cccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEE
Q 009607 337 KPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTV 388 (531)
Q Consensus 337 ~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtl 388 (531)
.... +-.=+|-|+=.|+|+.+ |.. |++.. +-++|.-+++
T Consensus 119 ~~~~-----~~FDvV~cmEVlEHv~d-------p~~-~~~~c~~lvkP~G~lf 158 (243)
T COG2227 119 ASAG-----GQFDVVTCMEVLEHVPD-------PES-FLRACAKLVKPGGILF 158 (243)
T ss_pred HhcC-----CCccEEEEhhHHHccCC-------HHH-HHHHHHHHcCCCcEEE
Confidence 3221 33446778888999865 333 66544 5669975544
No 41
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=70.48 E-value=13 Score=36.79 Aligned_cols=111 Identities=24% Similarity=0.221 Sum_probs=61.3
Q ss_pred HHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEE
Q 009607 247 QAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFR 326 (531)
Q Consensus 247 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~ 326 (531)
..+++++.=.+.-+|||+|-+.|. +..+|+.+ =|.+|+|..+.|. .++.+.+ .=..+|.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~---~P~l~~~v~Dlp~-----v~~~~~~---------~~rv~~~ 148 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARA---YPNLRATVFDLPE-----VIEQAKE---------ADRVEFV 148 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHH---STTSEEEEEE-HH-----HHCCHHH---------TTTEEEE
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHH---CCCCcceeeccHh-----hhhcccc---------ccccccc
Confidence 456677666666689999999993 34444444 2788999998763 2222222 2223443
Q ss_pred EeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCc---EEEEEecCCCC
Q 009607 327 GVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPK---IMTVVEQESNH 395 (531)
Q Consensus 327 ~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~Pk---IvtlvEqEanh 395 (531)
+-- -++. +.. .+++.+.- -||...+ .....+|+.+ +.|+|. .++|+|.=.+.
T Consensus 149 ~gd--~f~~-----~P~--~D~~~l~~--vLh~~~d------~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 149 PGD--FFDP-----LPV--ADVYLLRH--VLHDWSD------EDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp ES---TTTC-----CSS--ESEEEEES--SGGGS-H------HHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred ccc--HHhh-----hcc--ccceeeeh--hhhhcch------HHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 221 1111 211 24444443 4788766 3455677666 678987 77777764443
No 42
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=67.77 E-value=70 Score=34.22 Aligned_cols=98 Identities=10% Similarity=0.039 Sum_probs=51.4
Q ss_pred ceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCcccc
Q 009607 257 DCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDV 336 (531)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl 336 (531)
...+|+|+|.|.|.-.. .|+.+.++ .++|+++... ..++...++. ..-++.| +. ...+++
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~~---~~VtgVD~S~----~mL~~A~~k~----~~~~i~~----i~-gD~e~l 172 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVDA---KNVTILDQSP----HQLAKAKQKE----PLKECKI----IE-GDAEDL 172 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCCC---CEEEEEECCH----HHHHHHHHhh----hccCCeE----Ee-ccHHhC
Confidence 35689999999987433 34443222 5899998642 3344444332 1223433 22 233332
Q ss_pred cccccccCCC--CeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEE
Q 009607 337 KPWMLQVSPK--EALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVV 389 (531)
Q Consensus 337 ~~~~L~i~~g--EaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlv 389 (531)
. ...+ +.|+.|.. ||++.+ .+.+|+.+ |.|+|.-.+++
T Consensus 173 p-----~~~~sFDvVIs~~~--L~~~~d--------~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 173 P-----FPTDYADRYVSAGS--IEYWPD--------PQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred C-----CCCCceeEEEEcCh--hhhCCC--------HHHHHHHHHHhcCCCcEEEE
Confidence 2 2222 45555544 576543 23466544 67899866544
No 43
>PF05269 Phage_CII: Bacteriophage CII protein; InterPro: IPR007933 The CII protein is a transcription activator, conserved in bacteriophage lambda and related phages, that plays a key role in the decision between lytic or lysogenic phage development. CII is regulated at multiple levels including transcription, translation initiation, mRNA stability, and proteolysis []. Conditions that stabilise cII favour lysogenic development. The lambda CII protein activates three specific promoters, binding to direct repeat sequences rather than the more usual inverted repeats. Structurally, CII is a homotetramer where each monomer is composed of four alpha helices and a disordered C terminus [, ]. The alpha helical region is responsible for DNA binding and multimerisation. The homotetramer has an unusual spatial arrangement that allows recognition of the direct repeat sequences.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1ZS4_C 1ZPQ_C 1XWR_A.
Probab=66.33 E-value=4 Score=35.68 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.9
Q ss_pred hhhhhhhcCCcccchhHHHHHHHHHH
Q 009607 30 IDGLLAGAGYKVRSSELRQVAQRLER 55 (531)
Q Consensus 30 ~d~~l~~~~~~~~~~~~~~~~~~le~ 55 (531)
|=-+||++||++..+||+++++++.+
T Consensus 51 ~a~lLa~L~~~v~~~~i~~~~~~~~~ 76 (91)
T PF05269_consen 51 MAMLLAALELGVEDSEIARVAKQAAE 76 (91)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHH
Confidence 55689999999999999999988765
No 44
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=63.65 E-value=63 Score=31.22 Aligned_cols=100 Identities=21% Similarity=0.185 Sum_probs=50.8
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCccccccc
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPW 339 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~ 339 (531)
+|+|+|.+.|. +...++.+. |..++|||+.. ...++...+++ +..|+......+..+-.++..+.
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s----~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~~~~ 66 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTIS----PEQAEVGRERI----RALGLQGRIRIFYRDSAKDPFPD 66 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECC----HHHHHHHHHHH----HhcCCCcceEEEecccccCCCCC
Confidence 68999998885 344555543 33689999863 23444444433 33344332222222111110011
Q ss_pred ccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEE
Q 009607 340 MLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVV 389 (531)
Q Consensus 340 ~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlv 389 (531)
.+ +.| -+...+||+.+ .+.+|+.+ +.|+|.-.+++
T Consensus 67 ~f-----D~I--~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 67 TY-----DLV--FGFEVIHHIKD--------KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CC-----CEe--ehHHHHHhCCC--------HHHHHHHHHHHcCCCCEEEE
Confidence 11 222 24455677632 45677766 55799866443
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=61.90 E-value=64 Score=34.82 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=58.9
Q ss_pred HHHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceE
Q 009607 244 TANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRF 323 (531)
Q Consensus 244 tANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpF 323 (531)
..-..|++.+.-+..=+|+|+|.|.|. +...+|.+.+ .++|||+... ..++...++. + ++..
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~----~~l~~A~~~~----~--~l~v 215 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISA----EQQKLAQERC----A--GLPV 215 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCH----HHHHHHHHHh----c--cCeE
Confidence 334456666554444589999987764 4455665543 3899997642 4444444433 2 2334
Q ss_pred EEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEe
Q 009607 324 TFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVE 390 (531)
Q Consensus 324 eF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvE 390 (531)
+|.. . ...+++ ..+ +.|+.+- .++|+.. ...+.+++.+ +-|+|.-.+++.
T Consensus 216 ~~~~--~-D~~~l~-~~f-----D~Ivs~~--~~ehvg~------~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 216 EIRL--Q-DYRDLN-GQF-----DRIVSVG--MFEHVGP------KNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEEE--C-chhhcC-CCC-----CEEEEeC--chhhCCh------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 4422 1 222221 011 3333332 3566533 3345677655 567998766553
No 46
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=61.14 E-value=21 Score=28.63 Aligned_cols=93 Identities=27% Similarity=0.232 Sum_probs=49.8
Q ss_pred EEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCccccccccc
Q 009607 262 VDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWML 341 (531)
Q Consensus 262 IDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~~L 341 (531)
+|+|.|.|.....|.+ + +-.++||++... ..++. ..+..+..+++ |.. .+.+++
T Consensus 1 LdiG~G~G~~~~~l~~----~----~~~~v~~~D~~~----~~~~~----~~~~~~~~~~~--~~~---~d~~~l----- 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAK----R----GGASVTGIDISE----EMLEQ----ARKRLKNEGVS--FRQ---GDAEDL----- 54 (95)
T ss_dssp EEET-TTSHHHHHHHH----T----TTCEEEEEES-H----HHHHH----HHHHTTTSTEE--EEE---SBTTSS-----
T ss_pred CEecCcCCHHHHHHHh----c----cCCEEEEEeCCH----HHHHH----HHhcccccCch--hee---ehHHhC-----
Confidence 5788888776666555 3 446999998642 33333 33333444555 221 123333
Q ss_pred ccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEE
Q 009607 342 QVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTV 388 (531)
Q Consensus 342 ~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtl 388 (531)
.+.++..=+|-|...+|++ ..++.+++.+ |-|+|.-..+
T Consensus 55 ~~~~~sfD~v~~~~~~~~~--------~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 55 PFPDNSFDVVFSNSVLHHL--------EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SS-TT-EEEEEEESHGGGS--------SHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccccccccceeec--------cCHHHHHHHHHHHcCcCeEEe
Confidence 3444544455555567887 2356666655 6678876654
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=60.36 E-value=8 Score=32.42 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=19.7
Q ss_pred EEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCC
Q 009607 262 VDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPS 298 (531)
Q Consensus 262 IDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~ 298 (531)
+|+|.+.|.==..|++.+ |..++||++...
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~ 30 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISP 30 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSS
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCH
Confidence 477887776544555544 889999999765
No 48
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=60.22 E-value=20 Score=36.54 Aligned_cols=114 Identities=26% Similarity=0.277 Sum_probs=68.5
Q ss_pred HhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEec
Q 009607 250 LEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVA 329 (531)
Q Consensus 250 LEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~ 329 (531)
+.-+.-+.---|+|+|.|-|.+= +-|+.|- |-=.||||+++. +.|.+...|| .++.|+--
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsT----elL~~Rw---P~A~i~GiDsS~----~Mla~Aa~rl------p~~~f~~a--- 82 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNST----ELLARRW---PDAVITGIDSSP----AMLAKAAQRL------PDATFEEA--- 82 (257)
T ss_pred HhhCCccccceeeecCCCCCHHH----HHHHHhC---CCCeEeeccCCH----HHHHHHHHhC------CCCceecc---
Confidence 33444555668999999999764 3455563 445899998753 4444333322 23344321
Q ss_pred cCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCcEEEEEecCCCCCCc
Q 009607 330 ASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQP 398 (531)
Q Consensus 330 ~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~PkIvtlvEqEanhN~p 398 (531)
.+.+.+++ .+-..|.-|.+| |-|.+ ..+.|-+.+-.|.|.-+.-|-.-.|+..|
T Consensus 83 --Dl~~w~p~----~~~dllfaNAvl--qWlpd-------H~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 83 --DLRTWKPE----QPTDLLFANAVL--QWLPD-------HPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred --cHhhcCCC----Cccchhhhhhhh--hhccc-------cHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 22222221 122456678875 55544 45667788899999999888877776554
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=58.72 E-value=1.1e+02 Score=29.34 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=51.2
Q ss_pred eEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce-EEEEEeccCCccccc
Q 009607 259 VHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR-FTFRGVAASRLEDVK 337 (531)
Q Consensus 259 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp-FeF~~v~~~~ledl~ 337 (531)
-+|+|+|.|.|.- ++. ||.+ .|..++|||+... ..++.+ .+.++..|++ ++|..- +.+++.
T Consensus 44 ~~vLDiGcGtG~~--s~~--la~~---~~~~~V~~iD~s~----~~~~~a----~~~~~~~~~~~i~~i~~---d~~~~~ 105 (181)
T TIGR00138 44 KKVIDIGSGAGFP--GIP--LAIA---RPELKLTLLESNH----KKVAFL----REVKAELGLNNVEIVNG---RAEDFQ 105 (181)
T ss_pred CeEEEecCCCCcc--HHH--HHHH---CCCCeEEEEeCcH----HHHHHH----HHHHHHhCCCCeEEEec---chhhcc
Confidence 3899999999832 221 1222 1346899998652 233333 2344555663 555332 334432
Q ss_pred ccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEec
Q 009607 338 PWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVEQ 391 (531)
Q Consensus 338 ~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvEq 391 (531)
. -.+=+.|+.|+ +|+ .+.++..+ +-|+|.-+++++.
T Consensus 106 ~----~~~fD~I~s~~---~~~-----------~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 106 H----EEQFDVITSRA---LAS-----------LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred c----cCCccEEEehh---hhC-----------HHHHHHHHHHhcCCCCEEEEEc
Confidence 1 01114666655 343 23455554 4479998888763
No 50
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=57.97 E-value=1.4e+02 Score=31.30 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=50.1
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCccccccc
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPW 339 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~ 339 (531)
+|+|+|.|.|. ++..++.+ |+- +++||++.. ..+.+. +...+++.. +.+.+|... .++++..
T Consensus 125 ~VLDIGCG~G~----~~~~la~~--g~~--~V~GiD~S~----~~l~q~-~a~~~~~~~-~~~i~~~~~---d~e~lp~- 186 (322)
T PRK15068 125 TVLDVGCGNGY----HMWRMLGA--GAK--LVVGIDPSQ----LFLCQF-EAVRKLLGN-DQRAHLLPL---GIEQLPA- 186 (322)
T ss_pred EEEEeccCCcH----HHHHHHHc--CCC--EEEEEcCCH----HHHHHH-HHHHHhcCC-CCCeEEEeC---CHHHCCC-
Confidence 79999999984 33345544 332 599998642 122111 111122211 223444332 3333321
Q ss_pred ccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCcEEEEEe
Q 009607 340 MLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVE 390 (531)
Q Consensus 340 ~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~PkIvtlvE 390 (531)
-..=++|+.+. .|||+. ++.+.+-..-+.|+|.-.++.|
T Consensus 187 ---~~~FD~V~s~~--vl~H~~-------dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 187 ---LKAFDTVFSMG--VLYHRR-------SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ---cCCcCEEEECC--hhhccC-------CHHHHHHHHHHhcCCCcEEEEE
Confidence 00114444333 467753 4555444555778998776665
No 51
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=57.55 E-value=56 Score=35.46 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=58.4
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCccccccc
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPW 339 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~ 339 (531)
.|+|+|.|.|. +--.|+.+. |..++|+|+.+. ..++.+.+++......-.-.++|. ..+-++++...
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~----~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~ 297 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESP----MAVASSRLNVETNMPEALDRCEFM--INNALSGVEPF 297 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECCH----HHHHHHHHHHHHcCcccCceEEEE--EccccccCCCC
Confidence 79999999996 344555552 567999998652 455555555433211101134443 22223332221
Q ss_pred ccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHH-HHHhcCCcEEEEEec
Q 009607 340 MLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLG-WIRNLNPKIMTVVEQ 391 (531)
Q Consensus 340 ~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~-~Ir~L~PkIvtlvEq 391 (531)
.+ +.|+.|-.|...+-.. ......+++ .-+-|+|.-...++.
T Consensus 298 ~f-----DlIlsNPPfh~~~~~~-----~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RF-----NAVLCNPPFHQQHALT-----DNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CE-----EEEEECcCcccCccCC-----HHHHHHHHHHHHHhcccCCEEEEEE
Confidence 11 5777787764322111 122345554 446789987766663
No 52
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=56.28 E-value=1.4e+02 Score=31.63 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=55.7
Q ss_pred HHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEE
Q 009607 248 AILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRG 327 (531)
Q Consensus 248 AILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~ 327 (531)
+|++.+...+.=+|+|+|.|.|. ++..++.+ |+- +++||++.. ..+.+ -+...+++.. .-...+..
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~~--~v~GiDpS~----~ml~q-~~~~~~~~~~-~~~v~~~~ 177 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GAK--SLVGIDPTV----LFLCQ-FEAVRKLLDN-DKRAILEP 177 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CCC--EEEEEcCCH----HHHHH-HHHHHHHhcc-CCCeEEEE
Confidence 34554433333489999999986 34445543 332 789998753 22222 1122222211 11233322
Q ss_pred eccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCcEEEEEe
Q 009607 328 VAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVE 390 (531)
Q Consensus 328 v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~PkIvtlvE 390 (531)
. .++++... ..=++|..+. .|||+. ++.+.+-..-+.|+|.-.+++|
T Consensus 178 ~---~ie~lp~~----~~FD~V~s~g--vL~H~~-------dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 178 L---GIEQLHEL----YAFDTVFSMG--VLYHRK-------SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred C---CHHHCCCC----CCcCEEEEcc--hhhccC-------CHHHHHHHHHHhcCCCCEEEEE
Confidence 2 33444321 0113444443 467753 4555444455668998666654
No 53
>PRK14968 putative methyltransferase; Provisional
Probab=54.61 E-value=1.2e+02 Score=27.89 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=28.0
Q ss_pred ceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHH
Q 009607 257 DCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRL 312 (531)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL 312 (531)
+.-.|+|+|.+.|. +...|+.+ + .++||++.. .+.++.+.+++
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~s----~~~~~~a~~~~ 65 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDIN----PYAVECAKCNA 65 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-c----ceEEEEECC----HHHHHHHHHHH
Confidence 34469999999998 45556655 2 489999754 24455444443
No 54
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=54.09 E-value=2.2e+02 Score=27.66 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=54.2
Q ss_pred eEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce-EEEEEeccCCccccc
Q 009607 259 VHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR-FTFRGVAASRLEDVK 337 (531)
Q Consensus 259 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp-FeF~~v~~~~ledl~ 337 (531)
-.|+|+|.|.|. .+++ +|.+ .|..++|||+... +.++.+. +.++..+++ ++|..- ..+++.
T Consensus 47 ~~VLDiGcGtG~--~al~--la~~---~~~~~V~giD~s~----~~l~~A~----~~~~~~~l~~i~~~~~---d~~~~~ 108 (187)
T PRK00107 47 ERVLDVGSGAGF--PGIP--LAIA---RPELKVTLVDSLG----KKIAFLR----EVAAELGLKNVTVVHG---RAEEFG 108 (187)
T ss_pred CeEEEEcCCCCH--HHHH--HHHH---CCCCeEEEEeCcH----HHHHHHH----HHHHHcCCCCEEEEec---cHhhCC
Confidence 468999999883 2332 2222 1345999998642 3344333 444455664 555432 233332
Q ss_pred ccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEec
Q 009607 338 PWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVEQ 391 (531)
Q Consensus 338 ~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvEq 391 (531)
. -.+=+.|..|+. ..++.+++.+ +.|+|.-.+++..
T Consensus 109 ~----~~~fDlV~~~~~--------------~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 109 Q----EEKFDVVTSRAV--------------ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred C----CCCccEEEEccc--------------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 112356666641 2356677765 7889998877663
No 55
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=52.52 E-value=2.2e+02 Score=29.84 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCC
Q 009607 241 AHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVN 320 (531)
Q Consensus 241 ahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lg 320 (531)
|.+..-..|++-+.=+.--||+|||.| |-.|+.-.|.+-| .++|||..+. ..+....+| ++..|
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS~----~Q~~~~~~r----~~~~g 119 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLSE----EQLAYAEKR----IAARG 119 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCCH----HHHHHHHHH----HHHcC
Confidence 344455566666666778899999766 7889999998875 5999997642 333333333 34455
Q ss_pred ceEEEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHh-cCCcEE
Q 009607 321 IRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRN-LNPKIM 386 (531)
Q Consensus 321 vpFeF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~-L~PkIv 386 (531)
++=..+... ..+.++... .=.|-++=.++|+.. ...+.+++.+++ |+|+-.
T Consensus 120 l~~~v~v~l-~d~rd~~e~--------fDrIvSvgmfEhvg~------~~~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 120 LEDNVEVRL-QDYRDFEEP--------FDRIVSVGMFEHVGK------ENYDDFFKKVYALLKPGGR 171 (283)
T ss_pred CCcccEEEe-ccccccccc--------cceeeehhhHHHhCc------ccHHHHHHHHHhhcCCCce
Confidence 551111111 244554432 122334455677743 557889998866 577644
No 56
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=49.36 E-value=1.4e+02 Score=31.73 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=84.0
Q ss_pred HHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce-EEEE
Q 009607 248 AILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR-FTFR 326 (531)
Q Consensus 248 AILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp-FeF~ 326 (531)
.|..++. ....|||||.|.|..=..|+++|..+ +. ..+-.+|+-. .+.|++...+|. .-..| .+++
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS----~~~L~~a~~~L~----~~~~p~l~v~ 135 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVS----RSELQRTLAELP----LGNFSHVRCA 135 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECC----HHHHHHHHHhhh----hccCCCeEEE
Confidence 3444443 23479999999999999999999732 22 3577888765 378888888886 12234 7777
Q ss_pred EeccCCcccccccc--cccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHh--cCCcEEEEEecCCC--------
Q 009607 327 GVAASRLEDVKPWM--LQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRN--LNPKIMTVVEQESN-------- 394 (531)
Q Consensus 327 ~v~~~~ledl~~~~--L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~--L~PkIvtlvEqEan-------- 394 (531)
++..+ ..+.-.+. -.....-.++.-.-..+.++ .+.....||+.+++ |+|.=..++=-|..
T Consensus 136 ~l~gd-y~~~l~~l~~~~~~~~~r~~~flGSsiGNf------~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~ 208 (319)
T TIGR03439 136 GLLGT-YDDGLAWLKRPENRSRPTTILWLGSSIGNF------SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLR 208 (319)
T ss_pred EEEec-HHHHHhhcccccccCCccEEEEeCccccCC------CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHH
Confidence 77652 21110000 00111112222211222222 23456679999987 89976666544443
Q ss_pred -CCCc-chHHH-HHHHHHHHHHHhhh
Q 009607 395 -HNQP-EFLDR-FTTALYYYSTMFDS 417 (531)
Q Consensus 395 -hN~p-~F~~R-F~eAL~yYsalFDS 417 (531)
+|.+ ....+ ..+.|++.-..+++
T Consensus 209 AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 209 AYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred HhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 2222 23233 34566666666554
No 57
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=47.67 E-value=49 Score=30.15 Aligned_cols=41 Identities=34% Similarity=0.435 Sum_probs=28.1
Q ss_pred hCCCceeEEEEcccCCCCchHHHHHHHhcCCC-CCCeEEEEEeCCC
Q 009607 253 FDGHDCVHVVDFNLMHGLQWPALIQALALRPG-GPPLLRLTGIGPP 297 (531)
Q Consensus 253 ~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~g-GPP~LRITgI~~p 297 (531)
-...+..+|||||-|.|. |=+.|+..-. -.|.++|+||+..
T Consensus 21 ~~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~~ 62 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDCN 62 (141)
T ss_pred hccCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEECC
Confidence 345789999999999985 4444443100 0278999999865
No 58
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=46.04 E-value=2.8e+02 Score=27.32 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=30.2
Q ss_pred HHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 245 ANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 245 ANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
.-+.+++.+...+.-+|+|+|.|.|. +.+.|+.+ + -++||++..
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s 73 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLS 73 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECC
Confidence 44556676665444579999999983 55666654 2 489999864
No 59
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=45.59 E-value=21 Score=26.52 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHhcCCcEEEEEec
Q 009607 368 NSPMEMVLGWIRNLNPKIMTVVEQ 391 (531)
Q Consensus 368 ~~~~~~vL~~Ir~L~PkIvtlvEq 391 (531)
...++.++.+|+.++|+-+++|=.
T Consensus 17 Had~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 17 HADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp S-BHHHHHHHHHHHCSSEEEEESS
T ss_pred CCCHHHHHHHHHhcCCCEEEEecC
Confidence 567889999999999999988743
No 60
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=45.45 E-value=74 Score=32.79 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=62.5
Q ss_pred HHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEE
Q 009607 246 NQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTF 325 (531)
Q Consensus 246 NqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF 325 (531)
..-|+|.+.=+.-=||+|+|.| |-.++..+|.|.| .++|||... ....+. ..+.++..|++=..
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS----~~Q~~~----a~~~~~~~gl~~~v 114 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLS----EEQAEY----ARERIREAGLEDRV 114 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-----HHHHHH----HHHHHHCSTSSSTE
T ss_pred HHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECC----HHHHHH----HHHHHHhcCCCCce
Confidence 3456777665566699999876 6688999998864 589999753 122332 33455667765222
Q ss_pred EEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEEe
Q 009607 326 RGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVVE 390 (531)
Q Consensus 326 ~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlvE 390 (531)
..+.. ...+++. +=+-.|.|- .+.|+. +...+.+++.+ +-|+|.-..++.
T Consensus 115 ~v~~~-D~~~~~~-----~fD~IvSi~---~~Ehvg------~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 115 EVRLQ-DYRDLPG-----KFDRIVSIE---MFEHVG------RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEES--GGG--------S-SEEEEES---EGGGTC------GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEEe-eccccCC-----CCCEEEEEe---chhhcC------hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 22222 3334333 122233333 345552 24578899888 557999887664
No 61
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=44.91 E-value=1.7e+02 Score=28.70 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=57.6
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce-EEEEEeccCCcccccc
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR-FTFRGVAASRLEDVKP 338 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp-FeF~~v~~~~ledl~~ 338 (531)
.|+|++.|.|. --+.+|+.. . -++|+|+.. .+.++.+.+.+ +..|+. .+|. .. .+.+.-+
T Consensus 56 ~vLDl~~GsG~---l~l~~lsr~---a--~~V~~vE~~----~~a~~~a~~Nl----~~~~~~~v~~~--~~-D~~~~l~ 116 (199)
T PRK10909 56 RCLDCFAGSGA---LGLEALSRY---A--AGATLLEMD----RAVAQQLIKNL----ATLKAGNARVV--NT-NALSFLA 116 (199)
T ss_pred EEEEcCCCccH---HHHHHHHcC---C--CEEEEEECC----HHHHHHHHHHH----HHhCCCcEEEE--Ec-hHHHHHh
Confidence 68999999882 223445532 1 389999753 23444443333 333442 3332 22 1111100
Q ss_pred cccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 009607 339 WMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRN---LNPKIMTVVEQESNHN 396 (531)
Q Consensus 339 ~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~---L~PkIvtlvEqEanhN 396 (531)
. . -.+=+.|++|=.| +.+-.+.++..|.. ++|+-++++|.....+
T Consensus 117 ~-~-~~~fDlV~~DPPy-----------~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 117 Q-P-GTPHNVVFVDPPF-----------RKGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred h-c-CCCceEEEECCCC-----------CCChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 0 0 0112566666543 23556778888887 6999999999877644
No 62
>PRK06922 hypothetical protein; Provisional
Probab=41.99 E-value=1.6e+02 Score=34.53 Aligned_cols=111 Identities=11% Similarity=0.104 Sum_probs=57.9
Q ss_pred eEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCcccccc
Q 009607 259 VHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKP 338 (531)
Q Consensus 259 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~ 338 (531)
-.|+|+|.|.|. +...|+.+. |..++|||+.+. ..++.+.+++ +..+.+++|. .. ...++.
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~----~MLe~Ararl----~~~g~~ie~I--~g-Da~dLp- 480 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISE----NVIDTLKKKK----QNEGRSWNVI--KG-DAINLS- 480 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCH----HHHHHHHHHh----hhcCCCeEEE--Ec-chHhCc-
Confidence 479999999984 445566552 457999998763 4455554443 2334555542 22 122221
Q ss_pred cccccCCCCeEEeehHHHhhhhcCC----C-CCCCChHHHHHHHH-HhcCCcEE-EEEe
Q 009607 339 WMLQVSPKEALAVNSILQLHKLLGS----D-PARNSPMEMVLGWI-RNLNPKIM-TVVE 390 (531)
Q Consensus 339 ~~L~i~~gEaLaVN~~f~LH~L~~e----~-~~~~~~~~~vL~~I-r~L~PkIv-tlvE 390 (531)
. .+.++.+=+|-+.+.+|++.+- + .........+|+.+ |.|+|.-. +++|
T Consensus 481 ~--~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 481 S--SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred c--ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 0 0233433333344557877431 0 00112345566554 78999754 4444
No 63
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=41.86 E-value=2.4e+02 Score=26.18 Aligned_cols=25 Identities=12% Similarity=-0.106 Sum_probs=17.4
Q ss_pred chhhHHHHHhcCCceeccCChHHHH
Q 009607 455 PLAKWRNRLAGAGFRPLHLGSNAFR 479 (531)
Q Consensus 455 ~~~~Wr~rm~~AGF~~vpls~~a~~ 479 (531)
+.+.....|+++||..+.....++.
T Consensus 127 ~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 127 TGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred CHHHHHHHHHHcCCCcceEEECcch
Confidence 4456888899999998765444333
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=40.32 E-value=1.3e+02 Score=29.19 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=55.3
Q ss_pred ceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCc-eEEEEEeccCCc-c
Q 009607 257 DCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNI-RFTFRGVAASRL-E 334 (531)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgv-pFeF~~v~~~~l-e 334 (531)
+.-.|+|+|.|.|.-...|.+ + .|.-++|||+... +.++.+.+++. ..++ .++|.. . .. +
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~---~p~~~v~gVD~s~----~~i~~a~~~~~----~~~~~~v~~~~--~-d~~~ 101 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----A---NPDINFIGIEVHE----PGVGKALKKIE----EEGLTNLRLLC--G-DAVE 101 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----H---CCCccEEEEEech----HHHHHHHHHHH----HcCCCCEEEEe--c-CHHH
Confidence 445799999999976555543 3 1445899998753 44544444333 2333 244432 2 22 3
Q ss_pred cccccccccCCC--CeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEE
Q 009607 335 DVKPWMLQVSPK--EALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVV 389 (531)
Q Consensus 335 dl~~~~L~i~~g--EaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlv 389 (531)
.+.. .+.++ +.|++|.....++.... ......+.+|+.+ +-|+|.-+++.
T Consensus 102 ~l~~---~~~~~~~D~V~~~~~~p~~~~~~~--~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 102 VLLD---MFPDGSLDRIYLNFPDPWPKKRHH--KRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHH---HcCccccceEEEECCCCCCCcccc--ccccCCHHHHHHHHHHcCCCCEEEE
Confidence 2220 01122 45666654322211110 0111246778776 57899766543
No 65
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=40.14 E-value=2.7e+02 Score=27.63 Aligned_cols=117 Identities=15% Similarity=0.041 Sum_probs=57.8
Q ss_pred eeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEE------EeccC
Q 009607 258 CVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFR------GVAAS 331 (531)
Q Consensus 258 ~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~------~v~~~ 331 (531)
.-.|+|.|.|.|. =+..||.+ | ..+|||+... ..++ ++++..++..+.. .....
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~-G----~~V~avD~s~----~Ai~-------~~~~~~~l~~~~~~~~~~~~~~~~ 97 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ-G----HEVLGVELSE----LAVE-------QFFAENGLTPQTRQSGEFEHYQAG 97 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC-C----CeEEEEccCH----HHHH-------HHHHHcCCCccccccccccccccC
Confidence 3478999998883 34446654 2 5899998653 2333 2334455543210 00000
Q ss_pred CcccccccccccCC---CCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHh-cCCc--EEEEEe--cCCCCCCcch
Q 009607 332 RLEDVKPWMLQVSP---KEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRN-LNPK--IMTVVE--QESNHNQPEF 400 (531)
Q Consensus 332 ~ledl~~~~L~i~~---gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~-L~Pk--IvtlvE--qEanhN~p~F 400 (531)
++.-...+.+.+.+ +..=.|.-.-.+|++. +..|..++..|.+ |+|. +++++. .+...++|+|
T Consensus 98 ~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~------~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~ 168 (218)
T PRK13255 98 EITIYCGDFFALTAADLADVDAVYDRAALIALP------EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPF 168 (218)
T ss_pred ceEEEECcccCCCcccCCCeeEEEehHhHhhCC------HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCC
Confidence 11000111111111 1222233233567764 3668889988865 7999 554444 3334456654
No 66
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=39.82 E-value=1.3e+02 Score=28.95 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=51.0
Q ss_pred CceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCc--eEEEEEeccCCc
Q 009607 256 HDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNI--RFTFRGVAASRL 333 (531)
Q Consensus 256 ~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgv--pFeF~~v~~~~l 333 (531)
.+.-.|+|+|.|.|.- ...|+.+ + .++|||+... ..++...+++. ..++ ...|.. . .+
T Consensus 62 ~~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s~----~~i~~a~~~~~----~~~~~~~i~~~~--~-d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGSL----SIPLARR--G---AKVVASDISP----QMVEEARERAP----EAGLAGNITFEV--G-DL 121 (230)
T ss_pred CCCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECCH----HHHHHHHHHHH----hcCCccCcEEEE--c-Cc
Confidence 3456899999999853 3345543 2 2599998642 44555544432 2333 344432 2 12
Q ss_pred ccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhc-CCcEEEE
Q 009607 334 EDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNL-NPKIMTV 388 (531)
Q Consensus 334 edl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L-~PkIvtl 388 (531)
+..+ ..=+.++.+ ..|||+.+ .....+++.+.++ ++.+++.
T Consensus 122 ~~~~------~~fD~v~~~--~~l~~~~~------~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 122 ESLL------GRFDTVVCL--DVLIHYPQ------EDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcc------CCcCEEEEc--chhhcCCH------HHHHHHHHHHHhhcCCeEEEE
Confidence 2211 111334433 33566543 3466788777665 4444443
No 67
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=38.70 E-value=39 Score=34.97 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=19.9
Q ss_pred CCCceeEEEEcccCCCCchHHHHHHHhc
Q 009607 254 DGHDCVHVVDFNLMHGLQWPALIQALAL 281 (531)
Q Consensus 254 ~g~~~VHIIDf~I~~G~QWpsLiqaLA~ 281 (531)
.|.+.+||||++-+.+.+ -.+|.+++.
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 689999999998766666 345555654
No 68
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=38.59 E-value=1.5e+02 Score=29.22 Aligned_cols=111 Identities=20% Similarity=0.209 Sum_probs=65.6
Q ss_pred HHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEE
Q 009607 247 QAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFR 326 (531)
Q Consensus 247 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~ 326 (531)
..|++|+.--+.--++|+|.|.|.= + --||.+ | +.+|+++... ..+ ++|.+.|+.-+++.+..
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN--a--lyLA~~--G---~~VtAvD~s~----~al----~~l~~~a~~~~l~i~~~ 82 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN--A--LYLASQ--G---FDVTAVDISP----VAL----EKLQRLAEEEGLDIRTR 82 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH--H--HHHHHT--T----EEEEEESSH----HHH----HHHHHHHHHTT-TEEEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH--H--HHHHHC--C---CeEEEEECCH----HHH----HHHHHHHhhcCceeEEE
Confidence 4577777766677899999999842 1 125544 2 7899997642 233 45778899999997765
Q ss_pred EeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHh-cCCcEEEEE
Q 009607 327 GVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRN-LNPKIMTVV 389 (531)
Q Consensus 327 ~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~-L~PkIvtlv 389 (531)
.. .+++.. + +++.=+|.+...+++|.. ..++.++..|++ ++|.-+.+.
T Consensus 83 ~~---Dl~~~~---~---~~~yD~I~st~v~~fL~~------~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 83 VA---DLNDFD---F---PEEYDFIVSTVVFMFLQR------ELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp E----BGCCBS-------TTTEEEEEEESSGGGS-G------GGHHHHHHHHHHTEEEEEEEEE
T ss_pred Ee---cchhcc---c---cCCcCEEEEEEEeccCCH------HHHHHHHHHHHhhcCCcEEEEE
Confidence 43 233322 2 233334444445677643 568888888754 799755443
No 69
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=37.83 E-value=2.8e+02 Score=28.88 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=57.8
Q ss_pred eEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce-EEEEEeccCCccccc
Q 009607 259 VHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR-FTFRGVAASRLEDVK 337 (531)
Q Consensus 259 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp-FeF~~v~~~~ledl~ 337 (531)
-+|+|++.|.|. +--.||.+ + -+++||+.. ...++.+. +-|+..|++ .+|..- ..+++.
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s----~~av~~A~----~n~~~~~l~~v~~~~~---D~~~~~ 234 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATP-G----MQLTGIEIS----AEAIACAK----QSAAELGLTNVQFQAL---DSTQFA 234 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCC----HHHHHHHH----HHHHHcCCCceEEEEc---CHHHHH
Confidence 579999999985 33445553 2 289999764 24455444 334445653 556432 233222
Q ss_pred ccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCcEEEEEecC
Q 009607 338 PWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQE 392 (531)
Q Consensus 338 ~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~PkIvtlvEqE 392 (531)
.. . ...-+.|++|=. +.+.-+.++..+.+++|+-++.+.-+
T Consensus 235 ~~-~-~~~~D~Vv~dPP------------r~G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 235 TA-Q-GEVPDLVLVNPP------------RRGIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred Hh-c-CCCCeEEEECCC------------CCCccHHHHHHHHHcCCCeEEEEECC
Confidence 11 0 011257777721 33445678889999999988876543
No 70
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=36.35 E-value=81 Score=33.14 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=42.0
Q ss_pred HHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHH
Q 009607 247 QAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAE 314 (531)
Q Consensus 247 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~ 314 (531)
+.+++++.-...-.+||..+|.|..=-.+++.+ ||..++.||+.. .+.++.+.++|.+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~------~~~g~VigiD~D----~~al~~ak~~L~~ 66 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERL------GPKGRLIAIDRD----PDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhC------CCCCEEEEEcCC----HHHHHHHHHhhcc
Confidence 356777764444579999999998776666644 455699999865 3678888888755
No 71
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=35.67 E-value=2.5e+02 Score=29.87 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=58.3
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCccccccc
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPW 339 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~ 339 (531)
+|+|||.|.|. +-..|+.+ -|..++|+|+.. ...++.+.+++.+ -++..+|.. .+-++.+.
T Consensus 199 ~VLDlGCG~G~----ls~~la~~---~p~~~v~~vDis----~~Al~~A~~nl~~----n~l~~~~~~--~D~~~~~~-- 259 (342)
T PRK09489 199 KVLDVGCGAGV----LSAVLARH---SPKIRLTLSDVS----AAALESSRATLAA----NGLEGEVFA--SNVFSDIK-- 259 (342)
T ss_pred eEEEeccCcCH----HHHHHHHh---CCCCEEEEEECC----HHHHHHHHHHHHH----cCCCCEEEE--cccccccC--
Confidence 69999999996 44445554 245689999865 2556666554443 455555532 21122111
Q ss_pred ccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHH-HHhcCCcEEEEEe
Q 009607 340 MLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGW-IRNLNPKIMTVVE 390 (531)
Q Consensus 340 ~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~-Ir~L~PkIvtlvE 390 (531)
.+=+.|+.|-.| |.-.+. .....+.+++. .+.|+|.-..++.
T Consensus 260 ----~~fDlIvsNPPF--H~g~~~---~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 260 ----GRFDMIISNPPF--HDGIQT---SLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred ----CCccEEEECCCc--cCCccc---cHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 112678888764 543331 12344566655 4668997765543
No 72
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=35.31 E-value=4.1e+02 Score=25.42 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=50.1
Q ss_pred eeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCc-eEEEEEeccCCcccc
Q 009607 258 CVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNI-RFTFRGVAASRLEDV 336 (531)
Q Consensus 258 ~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgv-pFeF~~v~~~~ledl 336 (531)
.-.|+|+|.+.|. +...|+.. + .++|+|+... ..++...+++. ..++ .+.|... ..+++
T Consensus 46 ~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~----~~~~~a~~~~~----~~~~~~~~~~~~---d~~~~ 105 (224)
T TIGR01983 46 GLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASE----ENIEVAKLHAK----KDPLLKIEYRCT---SVEDL 105 (224)
T ss_pred CCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCH----HHHHHHHHHHH----HcCCCceEEEeC---CHHHh
Confidence 5689999999884 33344433 2 2499998642 33444443333 2344 3444322 22222
Q ss_pred cccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEE
Q 009607 337 KPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVV 389 (531)
Q Consensus 337 ~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlv 389 (531)
.... -.+-+.|+.+ ..+|+..+ ...+|+.+ +.|+|.-++++
T Consensus 106 ~~~~--~~~~D~i~~~--~~l~~~~~--------~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 106 AEKG--AKSFDVVTCM--EVLEHVPD--------PQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred hcCC--CCCccEEEeh--hHHHhCCC--------HHHHHHHHHHhcCCCcEEEE
Confidence 1110 0122444443 34666532 34566655 66788865554
No 73
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=34.34 E-value=3.7e+02 Score=28.81 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=56.3
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCc-eEEEEEeccCCcccccc
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNI-RFTFRGVAASRLEDVKP 338 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgv-pFeF~~v~~~~ledl~~ 338 (531)
+|+|++.|.|. +--.||.+ + -+++||+.. ...++.+.+. |+..++ ..+|.. . ..+++..
T Consensus 236 ~vLDL~cG~G~----~~l~la~~-~----~~v~~vE~~----~~av~~a~~N----~~~~~~~~~~~~~--~-d~~~~~~ 295 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP-D----TQLTGIEIE----SEAIACAQQS----AQMLGLDNLSFAA--L-DSAKFAT 295 (374)
T ss_pred EEEEccCCccH----HHHHHhhc-C----CeEEEEECC----HHHHHHHHHH----HHHcCCCcEEEEE--C-CHHHHHH
Confidence 68999998872 33344533 2 279999754 2455555443 334455 345532 2 2222211
Q ss_pred cccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCcEEEEEec
Q 009607 339 WMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQ 391 (531)
Q Consensus 339 ~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~PkIvtlvEq 391 (531)
. + ...-+.|++|=. +.+.-..++..|.+++|+-++.++-
T Consensus 296 ~-~-~~~~D~vi~DPP------------r~G~~~~~l~~l~~~~p~~ivyvsc 334 (374)
T TIGR02085 296 A-Q-MSAPELVLVNPP------------RRGIGKELCDYLSQMAPKFILYSSC 334 (374)
T ss_pred h-c-CCCCCEEEECCC------------CCCCcHHHHHHHHhcCCCeEEEEEe
Confidence 1 1 012367777732 3355678899999999988887763
No 74
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=34.09 E-value=3.8e+02 Score=24.98 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=30.8
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEE
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTF 325 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF 325 (531)
.|+|+|.|.|. +...++.+ ++ ++|||+.. .+.++.+.+++. ..++..+|
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s----~~~~~~a~~~~~----~~~~~~~~ 70 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDIN----PFAVKELRENAK----LNNVGLDV 70 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECC----HHHHHHHHHHHH----HcCCceEE
Confidence 49999999984 45556654 33 89999764 245555555543 33454444
No 75
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=32.26 E-value=3.9e+02 Score=27.34 Aligned_cols=128 Identities=19% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCc
Q 009607 254 DGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRL 333 (531)
Q Consensus 254 ~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~l 333 (531)
....++-|+..|+|-|.-.+-+ - --|--|||.|+|. +.+++...+ .+|+.-...|++..| + ..
T Consensus 73 gk~~K~~vLEvgcGtG~Nfkfy----~----~~p~~svt~lDpn-----~~mee~~~k--s~~E~k~~~~~~fvv-a-~g 135 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGANFKFY----P----WKPINSVTCLDPN-----EKMEEIADK--SAAEKKPLQVERFVV-A-DG 135 (252)
T ss_pred cccCccceEEecccCCCCcccc----c----CCCCceEEEeCCc-----HHHHHHHHH--HHhhccCcceEEEEe-e-ch
Confidence 4456899999999988543221 0 1277899999875 345555443 444544445552222 2 44
Q ss_pred ccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHh-cCCcEE-EEEecCCCCCCcchHHHHHHHHHHH
Q 009607 334 EDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRN-LNPKIM-TVVEQESNHNQPEFLDRFTTALYYY 411 (531)
Q Consensus 334 edl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~-L~PkIv-tlvEqEanhN~p~F~~RF~eAL~yY 411 (531)
|++. ++.++-.=+|-|.|-|=. ..+++ +.|+.+|+ |+|.-. ++.|.-+.-. .|..|+.+
T Consensus 136 e~l~----~l~d~s~DtVV~TlvLCS-------ve~~~-k~L~e~~rlLRpgG~iifiEHva~~y--~~~n~i~q----- 196 (252)
T KOG4300|consen 136 ENLP----QLADGSYDTVVCTLVLCS-------VEDPV-KQLNEVRRLLRPGGRIIFIEHVAGEY--GFWNRILQ----- 196 (252)
T ss_pred hcCc----ccccCCeeeEEEEEEEec-------cCCHH-HHHHHHHHhcCCCcEEEEEecccccc--hHHHHHHH-----
Confidence 5443 233332222222222211 23454 47777766 599755 6667665533 57777765
Q ss_pred HHHhhhh
Q 009607 412 STMFDSL 418 (531)
Q Consensus 412 salFDSL 418 (531)
+++|.+
T Consensus 197 -~v~ep~ 202 (252)
T KOG4300|consen 197 -QVAEPL 202 (252)
T ss_pred -HHhchh
Confidence 556664
No 76
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=31.11 E-value=3.4e+02 Score=26.36 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=23.2
Q ss_pred ceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 257 DCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 257 ~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
+..+|+|+|.|.| .+...++.+. |..++|||+..
T Consensus 87 ~~~~ilDig~G~G----~~~~~l~~~~---~~~~v~~iD~~ 120 (251)
T TIGR03534 87 GPLRVLDLGTGSG----AIALALAKER---PDARVTAVDIS 120 (251)
T ss_pred CCCeEEEEeCcHh----HHHHHHHHHC---CCCEEEEEECC
Confidence 3458999999998 3444455432 44699999864
No 77
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=30.86 E-value=68 Score=33.29 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=35.8
Q ss_pred CCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEE
Q 009607 285 GPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRG 327 (531)
Q Consensus 285 GPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~ 327 (531)
|+|..|||..++.-..-...|+++...+.+-++.+|....|+-
T Consensus 219 gaPrYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~~~~~r 261 (269)
T COG1093 219 GAPRYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGEGTFIR 261 (269)
T ss_pred cCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 7888888888765333347899999999999999999999974
No 78
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=30.59 E-value=92 Score=30.75 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=37.7
Q ss_pred HhhhCCCceeEEEEcccCCC---CchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHH
Q 009607 250 LEAFDGHDCVHVVDFNLMHG---LQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELA 316 (531)
Q Consensus 250 LEA~~g~~~VHIIDf~I~~G---~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA 316 (531)
|-+++=.+.=|++|+|.+.| .+|. ++ .|..|+++|+.. .+.++.+.+.+.+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~~----~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIERD----EEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEecC----HHHHHHHHHHHHHhC
Confidence 44555555559999999987 5775 32 478899999753 367788887776663
No 79
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=29.89 E-value=56 Score=33.65 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=16.2
Q ss_pred CCCceeEEEEcccCCCCchHHHHHHHhc
Q 009607 254 DGHDCVHVVDFNLMHGLQWPALIQALAL 281 (531)
Q Consensus 254 ~g~~~VHIIDf~I~~G~QWpsLiqaLA~ 281 (531)
.|.+.+||||+ +.+ ++ .+|..++.
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~ 73 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALH 73 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHH
Confidence 68999999999 444 55 34444443
No 80
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=29.70 E-value=1.1e+02 Score=30.08 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=70.0
Q ss_pred ceeEEEEcccC---CCCchHHHHHHHhcCCCCCCeEEE------EEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEE
Q 009607 257 DCVHVVDFNLM---HGLQWPALIQALALRPGGPPLLRL------TGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRG 327 (531)
Q Consensus 257 ~~VHIIDf~I~---~G~QWpsLiqaLA~R~gGPP~LRI------TgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~ 327 (531)
.+|+||.|=-+ -+-.=-++|.+|+.+ .|.+ |||... +....++.-+.+|+++.++.|-|..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~d-----d~~~~~~~fVk~fie~~~~~~P~~~ 128 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINAD-----DAIVGTGMFVKSSAKKGKKENPWSQ 128 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECc-----cchhhHHHHHHHHHHHhcccCCcce
Confidence 58999998644 345667899999654 2666 888633 4567788899999999998887766
Q ss_pred eccCCcccccccccccCC-CCe-EEeehHHHhhhhcCCCCCCCChHHHHHHHHHhc
Q 009607 328 VAASRLEDVKPWMLQVSP-KEA-LAVNSILQLHKLLGSDPARNSPMEMVLGWIRNL 381 (531)
Q Consensus 328 v~~~~ledl~~~~L~i~~-gEa-LaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L 381 (531)
+..+. +.......++.. .++ .+||-.-.+...... .......+.++..|+++
T Consensus 129 vllD~-~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G-~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 129 VVLDD-KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG-ALSDSDIQTVISLVNGL 182 (184)
T ss_pred EEECC-cchHHHhcCCCCCCceEEEECCCCcEEEEEeC-CCCHHHHHHHHHHHHHH
Confidence 65532 211222344443 366 677776554433221 11123455677777654
No 81
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=29.52 E-value=22 Score=24.19 Aligned_cols=10 Identities=50% Similarity=0.760 Sum_probs=8.2
Q ss_pred ccccCCCchh
Q 009607 74 TVHYNPSDLA 83 (531)
Q Consensus 74 tvh~npsd~~ 83 (531)
.||-||||-|
T Consensus 7 i~h~~psdks 16 (28)
T PRK14751 7 VMHKNPSDKS 16 (28)
T ss_pred eeecCCCcCc
Confidence 4899999964
No 82
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=27.92 E-value=1.4e+02 Score=25.19 Aligned_cols=31 Identities=19% Similarity=0.005 Sum_probs=21.7
Q ss_pred EEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 260 HVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 260 HIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
+|+|+|.|.|.. ...|+.+. |..++|||+..
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s 52 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERN 52 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCC
Confidence 899999998754 33444442 23789999864
No 83
>PRK03646 dadX alanine racemase; Reviewed
Probab=27.35 E-value=1.5e+02 Score=31.64 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=33.7
Q ss_pred ceeEE-EEcccC-CCCc---hHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHH
Q 009607 257 DCVHV-VDFNLM-HGLQ---WPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELAR 317 (531)
Q Consensus 257 ~~VHI-IDf~I~-~G~Q---WpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~ 317 (531)
-+||| ||-|++ .|+. ++.+++.+.. .|.|+|+||...-.. .+....+.+.+.+|-+
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH~a~-ad~~~~~~~Q~~~F~~ 177 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSHFAR-ADHPDGISEAMARIEQ 177 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcCCCC-CCCCCHHHHHHHHHHH
Confidence 37898 999987 4775 5566666543 356999999753221 1111225555556644
No 84
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=26.83 E-value=32 Score=28.36 Aligned_cols=21 Identities=43% Similarity=0.724 Sum_probs=17.3
Q ss_pred cchhhHHHHHhcCCceeccCC
Q 009607 454 EPLAKWRNRLAGAGFRPLHLG 474 (531)
Q Consensus 454 E~~~~Wr~rm~~AGF~~vpls 474 (531)
|+..+-|.+|+++|++||.+.
T Consensus 3 ~RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHHcCCCcceee
Confidence 445567999999999999875
No 85
>PF08499 PDEase_I_N: 3'5'-cyclic nucleotide phosphodiesterase N-terminal; InterPro: IPR013706 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This domain is found to the N terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (IPR002073 from INTERPRO).; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity
Probab=26.61 E-value=29 Score=28.13 Aligned_cols=26 Identities=31% Similarity=0.747 Sum_probs=22.6
Q ss_pred ccc-cccccccccccCCCchhhHHHHhhhc
Q 009607 64 PAD-ISQLASDTVHYNPSDLASWVDSLLSE 92 (531)
Q Consensus 64 ~~~-~~~~~~dtvh~npsd~~~w~~~~~~e 92 (531)
.|| +|.+-+|+| |++...||.++++-
T Consensus 5 ~edel~~i~~dsv---p~eVr~WLasTFtr 31 (59)
T PF08499_consen 5 EEDELSEIQSDSV---PDEVRDWLASTFTR 31 (59)
T ss_pred hhhhHhhcccccC---CHHHHHHHHHHHHh
Confidence 355 999999998 88899999999984
No 86
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=26.57 E-value=4.3e+02 Score=25.10 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHhcCCcEEEEEecCCCCC
Q 009607 369 SPMEMVLGWIRNLNPKIMTVVEQESNHN 396 (531)
Q Consensus 369 ~~~~~vL~~Ir~L~PkIvtlvEqEanhN 396 (531)
......++.+++++..++-+|....+.+
T Consensus 166 ~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 166 RDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 4566778888889888877666655533
No 87
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=26.53 E-value=1.9e+02 Score=30.32 Aligned_cols=102 Identities=22% Similarity=0.269 Sum_probs=55.3
Q ss_pred hhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEE-ec
Q 009607 251 EAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRG-VA 329 (531)
Q Consensus 251 EA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~-v~ 329 (531)
+-+.|.+ |+|+|.|-|. |=+-|| |.| --+|||+... +.++...++ ...==.++-+..|+- ..
T Consensus 86 k~~~g~~---ilDvGCGgGL----LSepLA-rlg----a~V~GID~s~----~~V~vA~~h-~~~dP~~~~~~~y~l~~~ 148 (282)
T KOG1270|consen 86 KPLLGMK---ILDVGCGGGL----LSEPLA-RLG----AQVTGIDASD----DMVEVANEH-KKMDPVLEGAIAYRLEYE 148 (282)
T ss_pred cccCCce---EEEeccCccc----cchhhH-hhC----CeeEeecccH----HHHHHHHHh-hhcCchhccccceeeehh
Confidence 3344555 9999999986 334454 333 5799998652 444444333 111111122222221 11
Q ss_pred cCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCc
Q 009607 330 ASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPK 384 (531)
Q Consensus 330 ~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~Pk 384 (531)
...+|++. +..=||-|+-.|+|.-+ +.+..-+.++.|+|.
T Consensus 149 ~~~~E~~~--------~~fDaVvcsevleHV~d-------p~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 149 DTDVEGLT--------GKFDAVVCSEVLEHVKD-------PQEFLNCLSALLKPN 188 (282)
T ss_pred hcchhhcc--------cccceeeeHHHHHHHhC-------HHHHHHHHHHHhCCC
Confidence 22333332 33557888889999754 445444677889995
No 88
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=26.36 E-value=2.1e+02 Score=28.68 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhCC--CceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHH
Q 009607 242 HFTANQAILEAFDG--HDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRL 312 (531)
Q Consensus 242 hftANqAILEA~~g--~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL 312 (531)
|..+.+..++++.. .+.-.|+|+|.|.|. |.-+++.. |+. +++||+... ..++.+.+++
T Consensus 102 ~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~----l~i~~~~~--g~~--~v~giDis~----~~l~~A~~n~ 162 (250)
T PRK00517 102 THPTTRLCLEALEKLVLPGKTVLDVGCGSGI----LAIAAAKL--GAK--KVLAVDIDP----QAVEAARENA 162 (250)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCcHHH----HHHHHHHc--CCC--eEEEEECCH----HHHHHHHHHH
Confidence 33334445666542 234579999999884 33344433 333 599998642 4555555443
No 89
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=25.89 E-value=1.8e+02 Score=29.75 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=44.3
Q ss_pred HhhhhhhhhhccCCCcccc-ccchhhHHHHHhcCCceeccCChHHHHHHHHHHhhc
Q 009607 434 LQREICNVVCCEGSARVER-HEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLF 488 (531)
Q Consensus 434 lgreI~NiVAcEG~~RvER-hE~~~~Wr~rm~~AGF~~vpls~~a~~qAk~Ll~~~ 488 (531)
--|+|.|+|+..+.++.-+ |-+-.+=...|+.|||...|+. .+-.|+...++..
T Consensus 99 k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K-~ae~Qv~evlK~l 153 (234)
T COG1500 99 KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFK-SAEEQVQEVLKAL 153 (234)
T ss_pred HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCC-CHHHHHHHHHHHH
Confidence 5789999999999887655 6677789999999999999987 4678887777653
No 90
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=25.60 E-value=1.4e+02 Score=27.69 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 247 QAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 247 qAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
+.|++.+.-...=+|+|+|.|.|. |...|+.| + -++|+|+..
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~ 44 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEID 44 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECC
Confidence 346666654444489999999876 55556666 2 389999865
No 91
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=25.45 E-value=4.6e+02 Score=26.94 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=33.0
Q ss_pred eeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce--EEE
Q 009607 258 CVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR--FTF 325 (531)
Q Consensus 258 ~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp--FeF 325 (531)
..+|+|+|.|.|. +.-+|+.+. |..++|||+.. ...++.+.++ |+..|+. .+|
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~---~~~~v~avDis----~~al~~A~~n----~~~~~~~~~i~~ 176 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF---PEAEVDAVDIS----PDALAVAEIN----IERHGLEDRVTL 176 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC---CCCEEEEEECC----HHHHHHHHHH----HHHcCCCCcEEE
Confidence 3589999999985 444555542 34699999864 2455555544 3444553 455
No 92
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=24.74 E-value=1.4e+02 Score=30.44 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=28.0
Q ss_pred HHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 249 ILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 249 ILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
|++.+.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|||+..
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~d 73 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEID 73 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEECC
Confidence 4445544455689999999884 66667766 22 89999865
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=23.88 E-value=92 Score=32.59 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhCChhhhHHHHHHHHHHhhh--CCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCC
Q 009607 223 ENEILYHHFYEACPYLKFAHFTANQAILEAF--DGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP 297 (531)
Q Consensus 223 ~~~~~~~~f~e~~P~~kFahftANqAILEA~--~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p 297 (531)
..+.++..|..-+ +...+.|++.+.|+..+ .....-+|+|+|.|.|. +...++.|.+ ..+||||+..
T Consensus 29 ~~~~v~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGi----lsl~la~r~~---~~~V~gVDis 97 (279)
T PHA03411 29 EKEFCYNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGR----LSFCMLHRCK---PEKIVCVELN 97 (279)
T ss_pred cHHHHHHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCH----HHHHHHHhCC---CCEEEEEECC
Confidence 4456677777776 66778888888887543 22334579999999983 3334444432 2699999764
No 94
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=23.05 E-value=6.6e+02 Score=27.48 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=58.5
Q ss_pred HhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCc-eEEEEEe
Q 009607 250 LEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNI-RFTFRGV 328 (531)
Q Consensus 250 LEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgv-pFeF~~v 328 (531)
++.+.-.+.-+|+|+|.|-|. +--.||.+. -+++||+.. ...++.+.+++ +..|+ ..+|..-
T Consensus 290 l~~l~~~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s----~~al~~A~~n~----~~~~~~~v~~~~~ 352 (443)
T PRK13168 290 LEWLDPQPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGV----EAMVERARENA----RRNGLDNVTFYHA 352 (443)
T ss_pred HHHhcCCCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCC----HHHHHHHHHHH----HHcCCCceEEEEe
Confidence 334443444589999999985 333466542 389999764 24555554433 33344 2444322
Q ss_pred ccCCccc-ccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCcEEEEEec
Q 009607 329 AASRLED-VKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQ 391 (531)
Q Consensus 329 ~~~~led-l~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~PkIvtlvEq 391 (531)
.+++ +....+.-..=+.|++|=. +.+ .+.++..+.+++|+-++.+.-
T Consensus 353 ---d~~~~l~~~~~~~~~fD~Vi~dPP------------r~g-~~~~~~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 353 ---NLEEDFTDQPWALGGFDKVLLDPP------------RAG-AAEVMQALAKLGPKRIVYVSC 400 (443)
T ss_pred ---ChHHhhhhhhhhcCCCCEEEECcC------------CcC-hHHHHHHHHhcCCCeEEEEEe
Confidence 2221 1100010011145655532 223 456789999999999888654
No 95
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=21.85 E-value=5.7e+02 Score=28.02 Aligned_cols=100 Identities=16% Similarity=0.081 Sum_probs=62.9
Q ss_pred CChhhhHHHHHHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHH
Q 009607 235 CPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAE 314 (531)
Q Consensus 235 ~P~~kFahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~ 314 (531)
+-.-+|++-.+. |++.. ...||+|+..-+..+.=-.+-.+|... +..-.+-+|=.+.+. +-..-+++++ +
T Consensus 86 ~~nG~FG~R~~~--ia~~~--g~~v~~~~~~wg~~v~p~~v~~~L~~~-~~~~~V~~vH~ETST-Gvlnpl~~I~----~ 155 (383)
T COG0075 86 VVNGKFGERFAE--IAERY--GAEVVVLEVEWGEAVDPEEVEEALDKD-PDIKAVAVVHNETST-GVLNPLKEIA----K 155 (383)
T ss_pred EeCChHHHHHHH--HHHHh--CCceEEEeCCCCCCCCHHHHHHHHhcC-CCccEEEEEeccCcc-cccCcHHHHH----H
Confidence 457788888775 44444 346999999988777777777777632 223356666665543 2112355555 6
Q ss_pred HHHhCCceEEEEEeccCCcccccccccccC
Q 009607 315 LARSVNIRFTFRGVAASRLEDVKPWMLQVS 344 (531)
Q Consensus 315 fA~~lgvpFeF~~v~~~~ledl~~~~L~i~ 344 (531)
.|+..|.-+-..+|.+---++++.+..+++
T Consensus 156 ~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiD 185 (383)
T COG0075 156 AAKEHGALLIVDAVSSLGGEPLKVDEWGID 185 (383)
T ss_pred HHHHcCCEEEEEecccCCCcccchhhcCcc
Confidence 777779888888886433455555555443
No 96
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=21.78 E-value=7.3e+02 Score=24.74 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=49.6
Q ss_pred eEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCc-eEEEEEeccCCccccc
Q 009607 259 VHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNI-RFTFRGVAASRLEDVK 337 (531)
Q Consensus 259 VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgv-pFeF~~v~~~~ledl~ 337 (531)
=+|+|+|.|.|.-... ++... .+.-+||||+... ..++...++ ++..++ ..+|.. ..++++.
T Consensus 79 ~~VLDiG~G~G~~~~~----~a~~~--g~~~~v~gvD~s~----~~l~~A~~~----~~~~g~~~v~~~~---~d~~~l~ 141 (272)
T PRK11873 79 ETVLDLGSGGGFDCFL----AARRV--GPTGKVIGVDMTP----EMLAKARAN----ARKAGYTNVEFRL---GEIEALP 141 (272)
T ss_pred CEEEEeCCCCCHHHHH----HHHHh--CCCCEEEEECCCH----HHHHHHHHH----HHHcCCCCEEEEE---cchhhCC
Confidence 3899999988742221 22221 2345899998642 334444333 233444 233322 1333332
Q ss_pred ccccccCCC--CeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCCcEEEE
Q 009607 338 PWMLQVSPK--EALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTV 388 (531)
Q Consensus 338 ~~~L~i~~g--EaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~PkIvtl 388 (531)
+..+ +.|+.|+++ |+..+ ....+=...|-|+|.-.++
T Consensus 142 -----~~~~~fD~Vi~~~v~--~~~~d-------~~~~l~~~~r~LkpGG~l~ 180 (272)
T PRK11873 142 -----VADNSVDVIISNCVI--NLSPD-------KERVFKEAFRVLKPGGRFA 180 (272)
T ss_pred -----CCCCceeEEEEcCcc--cCCCC-------HHHHHHHHHHHcCCCcEEE
Confidence 2222 456667764 55432 3333334557789985543
No 97
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=21.32 E-value=53 Score=35.63 Aligned_cols=14 Identities=21% Similarity=0.750 Sum_probs=11.5
Q ss_pred CCCceeEEEEcccC
Q 009607 254 DGHDCVHVVDFNLM 267 (531)
Q Consensus 254 ~g~~~VHIIDf~I~ 267 (531)
..+..|||||||+.
T Consensus 163 k~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 163 KDANVIHIIDFGMA 176 (449)
T ss_pred CCCceEEEEeccch
Confidence 45678999999985
No 98
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=21.26 E-value=1.4e+02 Score=28.35 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=32.8
Q ss_pred CeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEE
Q 009607 287 PLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRG 327 (531)
Q Consensus 287 P~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~ 327 (531)
|-|-+.|...|.--....|+++-+++.+.|+.+|+.++|..
T Consensus 8 PNLNlLG~REp~iYG~~tl~di~~~~~~~a~~~g~~v~~~Q 48 (141)
T TIGR01088 8 PNLNMLGLREPGVYGSQTLEEIVEIIETFAAQLNVELEFFQ 48 (141)
T ss_pred CCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 44556666666555567899999999999999999999975
No 99
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=20.08 E-value=2.8e+02 Score=27.87 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHHH--hhccCCCCccCCCchHHHHHHHHHhhCChhhhHHHHHHHHHHhhhCCCceeEEEEcccCCCCch
Q 009607 195 IGKVAGCFIDALSF--RIMGVGGSICGSVSENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQW 272 (531)
Q Consensus 195 ~qRlA~yFaeAL~~--Rl~~~~~~~~~~~~~~~~~~~~f~e~~P~~kFahftANqAILEA~~g~~~VHIIDf~I~~G~QW 272 (531)
.+|+-.|+.. |.. +.+.. ...+...++..+||++......-. .+. ..|++|.|-|-|+
T Consensus 21 ~~~l~~Y~~l-L~~wN~~~NL----t~~~~~~e~~~rHilDSl~~~~~~------------~~~-~~~~~DIGSGaGf-- 80 (215)
T COG0357 21 LEKLEAYVEL-LLKWNKAYNL----TAIRDPEELWQRHILDSLVLLPYL------------DGK-AKRVLDIGSGAGF-- 80 (215)
T ss_pred HHHHHHHHHH-HHHhhHhcCC----CCCCCHHHHHHHHHHHHhhhhhcc------------ccc-CCEEEEeCCCCCC--
Confidence 6677776543 322 22211 122345677788887654332211 111 5799999887775
Q ss_pred HHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCce-EEEEEeccCCcccccc
Q 009607 273 PALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIR-FTFRGVAASRLEDVKP 338 (531)
Q Consensus 273 psLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvp-FeF~~v~~~~ledl~~ 338 (531)
|.+.=|++ -|.+++|=|++-.. . -.-|.+.++.+|++ .++..- +.|++..
T Consensus 81 PGipLAI~-----~p~~~vtLles~~K-k-------~~FL~~~~~eL~L~nv~i~~~---RaE~~~~ 131 (215)
T COG0357 81 PGIPLAIA-----FPDLKVTLLESLGK-K-------IAFLREVKKELGLENVEIVHG---RAEEFGQ 131 (215)
T ss_pred chhhHHHh-----ccCCcEEEEccCch-H-------HHHHHHHHHHhCCCCeEEehh---hHhhccc
Confidence 88877765 36678999986431 1 12455667788888 887533 5565553
Done!