Query 009610
Match_columns 531
No_of_seqs 135 out of 453
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 15:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02291 phospho-2-dehydro-3-d 100.0 3E-211 7E-216 1627.5 46.1 449 75-523 18-466 (474)
2 TIGR01358 DAHP_synth_II 3-deox 100.0 5E-211 1E-215 1619.9 44.2 443 77-520 1-443 (443)
3 PF01474 DAHP_synth_2: Class-I 100.0 7E-206 2E-210 1579.7 28.9 438 76-513 1-439 (439)
4 COG3200 AroG 3-deoxy-D-arabino 100.0 2E-203 5E-208 1525.1 37.8 443 75-518 3-445 (445)
5 PRK09261 phospho-2-dehydro-3-d 97.8 0.0051 1.1E-07 65.0 22.8 175 327-519 152-347 (349)
6 PRK12755 phospho-2-dehydro-3-d 97.8 0.013 2.8E-07 62.0 25.1 174 332-521 158-352 (353)
7 TIGR00034 aroFGH phospho-2-deh 96.1 0.13 2.7E-06 54.7 13.9 169 334-519 154-343 (344)
8 PRK12756 phospho-2-dehydro-3-d 94.7 0.56 1.2E-05 50.0 13.2 168 336-519 160-347 (348)
9 PRK12822 phospho-2-dehydro-3-d 94.0 1.2 2.7E-05 47.6 14.0 171 334-521 159-349 (356)
10 PF00793 DAHP_synth_1: DAHP sy 93.4 0.064 1.4E-06 54.7 3.2 148 332-512 108-262 (270)
11 PLN03033 2-dehydro-3-deoxyphos 91.5 0.36 7.8E-06 50.3 5.9 87 332-426 107-199 (290)
12 PRK13398 3-deoxy-7-phosphohept 91.3 1 2.2E-05 46.0 8.7 92 332-428 111-208 (266)
13 KOG2599 Pyridoxal/pyridoxine/p 89.4 0.89 1.9E-05 47.5 6.5 64 364-427 59-123 (308)
14 TIGR01362 KDO8P_synth 3-deoxy- 87.5 2.2 4.9E-05 43.9 7.9 90 332-426 93-185 (258)
15 PRK13396 3-deoxy-7-phosphohept 87.2 1.6 3.4E-05 46.7 6.9 90 332-426 185-281 (352)
16 PRK08673 3-deoxy-7-phosphohept 85.1 4.3 9.3E-05 43.1 8.8 94 332-429 177-275 (335)
17 COG2240 PdxK Pyridoxal/pyridox 84.9 2.2 4.8E-05 44.4 6.4 65 364-428 50-116 (281)
18 PRK05756 pyridoxamine kinase; 84.1 2.4 5.1E-05 42.4 6.1 67 361-427 48-116 (286)
19 PRK05198 2-dehydro-3-deoxyphos 83.6 5.4 0.00012 41.3 8.5 90 332-426 101-193 (264)
20 TIGR00687 pyridox_kin pyridoxa 83.2 2.8 6E-05 41.9 6.2 61 363-423 50-112 (286)
21 PF10096 DUF2334: Uncharacteri 81.3 6.4 0.00014 39.4 7.9 97 363-464 9-126 (243)
22 cd02803 OYE_like_FMN_family Ol 80.7 3.2 6.9E-05 42.2 5.6 104 270-395 135-252 (327)
23 COG0722 AroG 3-deoxy-D-arabino 80.3 43 0.00094 36.1 13.8 183 322-520 147-350 (351)
24 TIGR01361 DAHP_synth_Bsub phos 73.9 10 0.00022 38.6 7.0 91 332-426 109-204 (260)
25 PRK12457 2-dehydro-3-deoxyphos 72.2 32 0.00069 36.2 10.2 90 332-426 107-201 (281)
26 PTZ00344 pyridoxal kinase; Pro 68.9 12 0.00027 37.9 6.3 64 362-425 52-117 (296)
27 cd01173 pyridoxal_pyridoxamine 67.8 12 0.00026 36.4 5.8 67 356-424 40-111 (254)
28 PRK13523 NADPH dehydrogenase N 67.8 6.6 0.00014 41.3 4.3 90 270-380 136-237 (337)
29 cd02931 ER_like_FMN Enoate red 65.7 7.9 0.00017 41.2 4.4 89 271-380 145-262 (382)
30 TIGR02644 Y_phosphoryl pyrimid 64.5 8.5 0.00018 42.0 4.4 87 366-477 47-141 (405)
31 PLN02978 pyridoxal kinase 63.6 14 0.00029 38.1 5.5 62 365-426 65-127 (308)
32 cd04747 OYE_like_5_FMN Old yel 59.3 13 0.00029 39.6 4.7 90 270-380 138-245 (361)
33 cd02930 DCR_FMN 2,4-dienoyl-Co 58.4 13 0.00027 39.0 4.3 93 270-383 131-237 (353)
34 cd04735 OYE_like_4_FMN Old yel 54.9 13 0.00028 39.1 3.7 90 270-380 138-245 (353)
35 COG1448 TyrB Aspartate/tyrosin 53.8 5.5 0.00012 43.4 0.8 47 393-449 108-168 (396)
36 PRK13296 tRNA CCA-pyrophosphor 53.8 21 0.00045 38.6 5.0 64 219-293 128-203 (360)
37 PRK10605 N-ethylmaleimide redu 52.6 18 0.00039 38.4 4.4 91 269-380 152-259 (362)
38 cd04883 ACT_AcuB C-terminal AC 51.9 29 0.00064 27.1 4.5 35 381-419 36-70 (72)
39 cd02067 B12-binding B12 bindin 50.7 53 0.0011 28.6 6.3 55 361-421 31-87 (119)
40 PLN03033 2-dehydro-3-deoxyphos 50.1 25 0.00054 37.1 4.8 58 398-456 217-277 (290)
41 TIGR03822 AblA_like_2 lysine-2 48.3 65 0.0014 33.6 7.5 134 369-516 152-294 (321)
42 cd01828 sialate_O-acetylestera 47.9 81 0.0018 28.3 7.3 53 368-422 33-95 (169)
43 PRK13397 3-deoxy-7-phosphohept 47.6 32 0.0007 35.4 5.1 91 332-426 99-194 (250)
44 TIGR01309 L30P_arch 50S riboso 46.3 14 0.00031 35.3 2.2 108 86-210 27-145 (152)
45 PLN03007 UDP-glucosyltransfera 45.5 45 0.00098 36.5 6.2 39 385-423 283-323 (482)
46 cd04738 DHOD_2_like Dihydrooro 45.5 25 0.00053 36.6 4.0 38 357-395 203-240 (327)
47 cd08555 PI-PLCc_GDPD_SF Cataly 44.0 61 0.0013 30.4 6.0 62 361-422 86-158 (179)
48 PRK12595 bifunctional 3-deoxy- 42.2 74 0.0016 34.2 7.0 89 332-426 202-297 (360)
49 TIGR03212 uraD_N-term-dom puta 41.9 1.1E+02 0.0024 31.9 8.0 80 372-464 79-159 (297)
50 PRK08255 salicylyl-CoA 5-hydro 41.9 31 0.00068 39.9 4.5 90 270-380 545-648 (765)
51 cd04734 OYE_like_3_FMN Old yel 41.5 32 0.0007 36.1 4.1 90 270-380 135-238 (343)
52 cd03174 DRE_TIM_metallolyase D 40.1 1.7E+02 0.0038 28.4 8.7 90 368-476 52-141 (265)
53 cd02685 MIT_C MIT_C; domain fo 38.4 82 0.0018 30.4 5.9 65 372-437 38-108 (148)
54 cd02071 MM_CoA_mut_B12_BD meth 38.1 1.1E+02 0.0024 27.2 6.4 56 360-421 30-87 (122)
55 cd02929 TMADH_HD_FMN Trimethyl 37.6 36 0.00079 36.2 3.8 90 270-380 144-249 (370)
56 cd04733 OYE_like_2_FMN Old yel 37.0 48 0.001 34.5 4.6 92 269-381 142-247 (338)
57 PRK05286 dihydroorotate dehydr 36.2 42 0.00092 35.3 4.0 38 357-395 212-249 (344)
58 cd04741 DHOD_1A_like Dihydroor 35.8 52 0.0011 33.8 4.5 51 347-397 144-199 (294)
59 PRK07394 hypothetical protein; 34.9 33 0.00072 36.4 3.1 88 368-478 57-155 (342)
60 TIGR01036 pyrD_sub2 dihydrooro 34.8 41 0.00088 35.5 3.6 57 338-395 181-248 (335)
61 PRK10887 glmM phosphoglucosami 34.7 71 0.0015 34.5 5.5 14 413-428 170-183 (443)
62 PRK02506 dihydroorotate dehydr 34.2 41 0.00089 34.9 3.5 137 349-520 146-296 (310)
63 cd05800 PGM_like2 This PGM-lik 33.3 98 0.0021 33.4 6.3 63 359-428 107-185 (461)
64 PLN02826 dihydroorotate dehydr 32.5 49 0.0011 36.1 3.9 55 338-393 231-298 (409)
65 PRK14314 glmM phosphoglucosami 31.9 62 0.0013 35.0 4.5 15 412-428 175-189 (450)
66 cd01829 SGNH_hydrolase_peri2 S 29.9 1.4E+02 0.003 27.5 5.9 28 397-424 91-118 (200)
67 PRK06252 methylcobalamin:coenz 29.6 40 0.00086 34.6 2.5 51 398-448 177-230 (339)
68 cd02810 DHOD_DHPD_FMN Dihydroo 29.5 47 0.001 33.3 2.9 38 357-395 163-200 (289)
69 PF00701 DHDPS: Dihydrodipicol 28.7 93 0.002 31.4 4.9 87 365-467 49-135 (289)
70 PF14658 EF-hand_9: EF-hand do 28.4 57 0.0012 27.5 2.8 35 349-390 21-55 (66)
71 cd01822 Lysophospholipase_L1_l 27.8 2.7E+02 0.0059 24.8 7.3 31 395-425 82-112 (177)
72 PRK10885 cca multifunctional t 27.5 1.3E+02 0.0028 32.8 5.9 26 220-245 129-165 (409)
73 PRK13298 tRNA CCA-pyrophosphor 27.5 1.5E+02 0.0033 32.7 6.6 60 219-292 128-204 (417)
74 PRK12457 2-dehydro-3-deoxyphos 27.3 1E+02 0.0022 32.6 4.9 96 338-456 171-274 (281)
75 cd02933 OYE_like_FMN Old yello 27.3 1.1E+02 0.0024 32.3 5.3 92 270-382 146-253 (338)
76 TIGR01463 mtaA_cmuA methyltran 27.3 54 0.0012 33.7 3.0 35 398-432 177-211 (340)
77 cd08229 STKc_Nek7 Catalytic do 27.2 1.7E+02 0.0036 27.6 6.0 24 270-293 107-130 (267)
78 cd02911 arch_FMN Archeal FMN-b 27.1 71 0.0015 31.9 3.7 42 349-392 129-173 (233)
79 TIGR03006 pepcterm_polyde poly 26.5 2.1E+02 0.0046 29.3 7.0 74 371-457 29-102 (265)
80 TIGR02645 ARCH_P_rylase putati 25.9 70 0.0015 36.1 3.7 83 366-476 132-222 (493)
81 TIGR02826 RNR_activ_nrdG3 anae 25.7 1.2E+02 0.0027 28.4 4.8 50 364-418 43-92 (147)
82 PF12617 LdpA_C: Iron-Sulfur b 25.7 1.4E+02 0.0029 29.9 5.2 59 369-428 20-81 (183)
83 PRK05820 deoA thymidine phosph 25.4 96 0.0021 34.5 4.6 63 366-434 50-122 (440)
84 TIGR01942 pcnB poly(A) polymer 25.0 1.6E+02 0.0035 32.4 6.2 58 220-292 165-235 (410)
85 cd02932 OYE_YqiM_FMN Old yello 24.3 1.2E+02 0.0026 31.5 4.9 95 270-382 148-253 (336)
86 PRK11613 folP dihydropteroate 24.3 1.4E+02 0.003 31.3 5.3 46 404-454 123-168 (282)
87 KOG3943 THUMP domain-containin 23.1 60 0.0013 33.9 2.3 128 342-478 117-254 (291)
88 PRK14315 glmM phosphoglucosami 23.0 1.1E+02 0.0024 33.1 4.5 14 413-428 175-188 (448)
89 TIGR02370 pyl_corrinoid methyl 22.9 1.9E+02 0.0042 28.0 5.8 54 361-421 116-173 (197)
90 PRK08136 glycosyl transferase 22.9 66 0.0014 34.0 2.7 88 367-478 54-149 (317)
91 TIGR02491 NrdG anaerobic ribon 22.8 1.7E+02 0.0037 27.2 5.1 55 363-420 42-101 (154)
92 TIGR02692 tRNA_CCA_actino tRNA 22.8 1E+02 0.0022 33.8 4.2 59 220-293 167-238 (466)
93 cd02808 GltS_FMN Glutamate syn 22.7 1E+02 0.0022 33.2 4.2 67 347-414 203-281 (392)
94 PF14606 Lipase_GDSL_3: GDSL-l 22.5 3E+02 0.0066 27.1 7.0 89 394-489 71-165 (178)
95 cd00468 HIT_like HIT family: H 22.5 1.9E+02 0.0042 23.1 4.8 55 129-184 17-75 (86)
96 PRK05722 glucose-6-phosphate 1 21.7 54 0.0012 36.8 1.9 54 144-208 259-313 (495)
97 PRK06049 rpl30p 50S ribosomal 21.4 1E+02 0.0023 29.6 3.5 108 85-210 28-147 (154)
98 cd00959 DeoC 2-deoxyribose-5-p 21.0 1.2E+02 0.0025 29.4 3.8 31 347-378 162-195 (203)
99 PF04136 Sec34: Sec34-like fam 20.9 38 0.00083 32.2 0.5 41 268-320 94-134 (157)
100 KOG0747 Putative NAD+-dependen 20.5 1.3E+02 0.0029 32.3 4.3 59 387-459 177-241 (331)
101 PF05265 DUF723: Protein of un 20.3 72 0.0016 26.7 1.9 18 414-432 28-45 (60)
102 PRK14046 malate--CoA ligase su 20.2 2.3E+02 0.005 30.6 6.2 67 354-427 282-352 (392)
103 PLN02210 UDP-glucosyl transfer 20.2 1.7E+02 0.0037 32.1 5.2 78 342-423 209-307 (456)
104 PRK13297 tRNA CCA-pyrophosphor 20.1 2.1E+02 0.0046 31.2 5.8 59 220-292 140-213 (364)
105 cd06619 PKc_MKK5 Catalytic dom 20.0 1.6E+02 0.0035 28.2 4.6 23 271-293 97-119 (279)
No 1
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=100.00 E-value=3.2e-211 Score=1627.53 Aligned_cols=449 Identities=89% Similarity=1.397 Sum_probs=443.1
Q ss_pred CCCCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhcCCeeEEecCCccchhhhcChhhHH
Q 009610 75 GKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIR 154 (531)
Q Consensus 75 ~~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~ 154 (531)
..|+|+|||++|++|||.|||+++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus 18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir 97 (474)
T PLN02291 18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR 97 (474)
T ss_pred CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHH
Q 009610 155 DTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSA 234 (531)
Q Consensus 155 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~Sa 234 (531)
+|+++|+|||.+|+|++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus 98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa 177 (474)
T PLN02291 98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA 177 (474)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCccccccccccchhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccc
Q 009610 235 ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYE 314 (531)
Q Consensus 235 aTLn~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE 314 (531)
+|||+||||..||||||++++.||++|+++++.+++|++++++|++||+||++||++.+...+++++||||||||||+||
T Consensus 178 atlnllRa~~~gg~adl~~~~~W~~~fv~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~~~l~~~~~yTSHEaLlL~YE 257 (474)
T PLN02291 178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIMTTTEFWTSHECLLLPYE 257 (474)
T ss_pred HHHHHHHHHhcCCchhhccccccchhhhccCchhhHHHHHHHHHHHHHHHHHHcCCCccccccccCceeechHhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999988657889999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009610 315 QALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRM 394 (531)
Q Consensus 315 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~Rm 394 (531)
+||||.|+.+|.|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||
T Consensus 258 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~Rm 337 (474)
T PLN02291 258 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRM 337 (474)
T ss_pred hhhhccCCCCCCcccccccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009610 395 GAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVT 474 (531)
Q Consensus 395 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VT 474 (531)
||+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+|||||||||||||||
T Consensus 338 Ga~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~~ff~vh~~~Gt~~GGlHLElTG~dVT 417 (474)
T PLN02291 338 GAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVT 417 (474)
T ss_pred chHHHHHHHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHHhhccc
Q 009610 475 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKRLGT 523 (531)
Q Consensus 475 ECvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~iA~~l~~~~~~~ 523 (531)
||+||+..++|+||.+||+|+||||||++|||||||+||++|+++|...
T Consensus 418 EC~Gg~~~i~e~dL~~rY~T~CDPRLN~~QsLelaf~va~~l~~~~~~~ 466 (474)
T PLN02291 418 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRIRS 466 (474)
T ss_pred eeCCCccccCcchhhhccccCCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999998877654
No 2
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=100.00 E-value=4.7e-211 Score=1619.88 Aligned_cols=443 Identities=62% Similarity=1.075 Sum_probs=438.9
Q ss_pred CCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhcCCeeEEecCCccchhhhcChhhHHHH
Q 009610 77 WALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDT 156 (531)
Q Consensus 77 Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~~k 156 (531)
|+|+|||++||+|||+|||+.+|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++|
T Consensus 1 w~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~aFlLQgGDCAE~F~~~~~~~i~~k 80 (443)
T TIGR01358 1 WSPQSWRSKPAAQQPTYPDAGALEAVLDTLRSLPPLVFAGEIRRLKRQLAQVAEGEAFLLQGGDCAESFKDCTADHIRNK 80 (443)
T ss_pred CCchhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEeCccccCchhhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 009610 157 FRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAAT 236 (531)
Q Consensus 157 ~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~SaaT 236 (531)
+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||++|
T Consensus 81 ~~~llqMa~vl~~~~~~PVVkVGRiAGQyAKPRS~~~E~~~G~~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~saat 160 (443)
T TIGR01358 81 LRVLLQMAVVLTYGASLPVVKVGRIAGQYAKPRSAPTETRDGVTLPSYRGDIINGPAFTEAARVPDPRRLVRAYHQSAAT 160 (443)
T ss_pred HHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCChhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCccccccccccchhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccc
Q 009610 237 LNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQA 316 (531)
Q Consensus 237 Ln~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~a 316 (531)
||+||||..|||||||++++||++|+++++.+++|++++++|++||+||++||++.++ .+++++||||||||||+||+|
T Consensus 161 ln~lRa~~~gg~adl~~~~~W~~~f~~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~-~l~~~~~~TSHEaLlL~YE~a 239 (443)
T TIGR01358 161 LNLVRALTTGGYADLHQVHYWNLEFVGYSPAGARYEKLASEIDEALRFMSACGLAPRY-NLQTVEFYTSHEALLLPYEEA 239 (443)
T ss_pred HHHHHHHhcCCchhhcccchhhhhhhhcCchhhHHHHHHHHHHHHHHHHHHcCCCccc-ccCcCceeechHhhccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999886 688999999999999999999
Q ss_pred cccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccCh
Q 009610 317 LTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGA 396 (531)
Q Consensus 317 ltR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa 396 (531)
|||.|+.+|+|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||||
T Consensus 240 ltR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~~l~~L~~~LnP~~epGRlTLI~RmGa 319 (443)
T TIGR01358 240 LTRVDSRSGGWFDLSAHMLWIGERTRQLDGAHVEFLRGVRNPIGIKVGPSMTPDELLRLIERLNPENEPGRLTLISRMGA 319 (443)
T ss_pred hhcccCCCCCcccccccccccccccCCCCchHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcccc
Q 009610 397 ENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTEC 476 (531)
Q Consensus 397 ~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTEC 476 (531)
+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+|||||||||||||||||
T Consensus 320 ~kV~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~~ff~vh~~~Gt~~GGlHlE~Tg~dVTEC 399 (443)
T TIGR01358 320 DKIADKLPPLLRAVKAAGRRVVWVCDPMHGNTEEAASGYKTRRFDDIRSEVKGFFEVHRAEGTHPGGVHLELTGEDVTEC 399 (443)
T ss_pred hHHHHhHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHHhh
Q 009610 477 IGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKR 520 (531)
Q Consensus 477 vGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~iA~~l~~~~ 520 (531)
+||+..++++||.+||+|+||||||++|||||||+||++|++.|
T Consensus 400 ~Gg~~~i~e~dL~~rY~T~CDPRLN~~QsLelaf~va~~l~~~~ 443 (443)
T TIGR01358 400 LGGAREITETDLASRYETACDPRLNAEQSLELAFLVAEKLRDVR 443 (443)
T ss_pred CCCccccCcchhhhccccCCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999997653
No 3
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=100.00 E-value=7.5e-206 Score=1579.72 Aligned_cols=438 Identities=60% Similarity=1.076 Sum_probs=356.9
Q ss_pred CCCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhcCCeeEEecCCccchhhhcChhhHHH
Q 009610 76 KWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRD 155 (531)
Q Consensus 76 ~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~~ 155 (531)
+|+|+||+++|++|||.|||+.+|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++
T Consensus 1 ~W~p~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~~~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~I~~ 80 (439)
T PF01474_consen 1 EWSPSSWRSKPAAQQPEYPDPDALAEVLAKLASLPPLVFAGEIRRLREQLADVARGEAFLLQGGDCAESFAECTADHIRD 80 (439)
T ss_dssp ---HHHHHTS--SS---S-HHHHH-HHHHHHTTS--SS-HHHHHHHHHHHHHHHTTSSEEEEEEESS--STT-SHHHHHH
T ss_pred CCChhhHHhCCcccCCCCcCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcCCeEEEeCCCcccChhhcChHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 009610 156 TFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAA 235 (531)
Q Consensus 156 k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~Saa 235 (531)
|+++|+|||.+|++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||++|++
T Consensus 81 k~~~Llqma~vL~~~~~~PVVrVGRiAGQyAKPRS~~~E~vdG~~LPsyRGD~VN~~~~~~~aR~PDP~RlL~aY~~Saa 160 (439)
T PF01474_consen 81 KFKLLLQMALVLTYGAGKPVVRVGRIAGQYAKPRSSPTETVDGVELPSYRGDIVNGPEFTPEARRPDPQRLLRAYFHSAA 160 (439)
T ss_dssp HHHHHHHHHHHHHHHHTS-EEEEEEBSS------S-SB----TTSSB----TTTS-SSSSHHHHS--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEechhhhcccCCCCCCccCCCCccCcccccccccCCCCChhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCccccccccccchhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCC-CCCCCccceeecccccccccc
Q 009610 236 TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLD-HPAMTSTEFWTSHECLLLPYE 314 (531)
Q Consensus 236 TLn~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~~al~Fm~a~G~~~~-~~~~~~~~~~tSHEaLlL~YE 314 (531)
|||+||+|++||||||+++++||++|+++++.+++|++++++|++||+||++||++.+ ++.+.+++||||||||||+||
T Consensus 161 tLn~lRa~~~~G~Adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~g~~~~~~~~~~~~~~~tSHEaLlL~YE 240 (439)
T PF01474_consen 161 TLNLLRAFASGGFADLHHVHQWNLDFVRNSPLGERYEELADEIDDALRFMRACGVDSDSSPALRTVDFYTSHEALLLDYE 240 (439)
T ss_dssp HHHHHHHHHTSCCG-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTT-----GGGST---EEEEEE---HHHH
T ss_pred HHHHHHHHhcCChhhhcccccchhhhhcCChhhhHHHHHHHHHHHHHHHHHHcCCCccccccccccccccchHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999976 667899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009610 315 QALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRM 394 (531)
Q Consensus 315 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~Rm 394 (531)
+||||.|+.+|.||+||||||||||||||+|||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+||
T Consensus 241 ~altR~d~~~g~~y~~SaH~~WIGeRTRq~dgAHve~~~gi~NPigvKvGP~~~~~~l~~l~~~LnP~~~pGRltlI~Rm 320 (439)
T PF01474_consen 241 EALTRQDSDTGRWYNTSAHFLWIGERTRQLDGAHVEFLRGIANPIGVKVGPSMTPEELVELCDRLNPDNEPGRLTLITRM 320 (439)
T ss_dssp HHTEEEESSSEEEEETT-SEEEE-TTT--TTSHHHHHHHHB-S-EEEEE-TT--HHHHHHHHHHHSTT--TTSEEEEE--
T ss_pred hhhccccCCCCCccccccceeeecccccCCchhHHHHHhhccCccceeeCCCCCHHHHHHHHHHhCCCCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009610 395 GAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVT 474 (531)
Q Consensus 395 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VT 474 (531)
|+++|+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+|||||||||||+|||
T Consensus 321 Ga~~v~~~LP~li~aV~~~g~~vvW~cDPMHGNT~~~~~G~KTR~f~~i~~Ev~~ff~ih~~~g~~~gGvHlE~Tg~~VT 400 (439)
T PF01474_consen 321 GADKVRERLPPLIEAVQAAGHPVVWSCDPMHGNTITTSSGYKTRHFDDILAEVRGFFEIHRAEGTHPGGVHLEMTGDDVT 400 (439)
T ss_dssp -TTTHHHHHHHHHHHHHTTT---EEEE-TSTTSEEE-TTSSEEEBHHHHHHHHHHHHHHHHHHT--EEEEEEEB-SS---
T ss_pred CcHHHHHHhHHHHHHHHHCCCceEEeccCCCCCceECCCCccCCcHHHHHHHHHHHHHHHHHcCCccCceeEEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHH
Q 009610 475 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIA 513 (531)
Q Consensus 475 ECvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~iA 513 (531)
||+||++.++++||..||+|+||||||++|||||||+||
T Consensus 401 EC~gg~~~~~~~dL~~~Y~t~CDPRLN~~Qslelaf~iA 439 (439)
T PF01474_consen 401 ECVGGAEGLSEEDLGRRYETLCDPRLNAEQSLELAFLIA 439 (439)
T ss_dssp -SBBTTTTB-TTGGGSS---SSS--B-HHHHHHHHHHHH
T ss_pred eeCCCCCcCChhhccccccCCCCCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999997
No 4
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-203 Score=1525.13 Aligned_cols=443 Identities=62% Similarity=1.068 Sum_probs=438.9
Q ss_pred CCCCCcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhcCCeeEEecCCccchhhhcChhhHH
Q 009610 75 GKWALEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIR 154 (531)
Q Consensus 75 ~~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~ 154 (531)
..|+|+||+++|++|||.|||..+|..|.++|+++|||||++|+++||++||+||.|+|||||||||||+|.++++++||
T Consensus 3 ~~w~p~swr~kpi~Q~p~ypd~~~l~~v~a~L~~~PplvfAgEar~Lk~~LA~Va~g~AfLLQgGDCAEsf~~~~a~~Ir 82 (445)
T COG3200 3 TTWLPNSWRAKPIQQQPTYPDAQALARVEARLRSYPPLVFAGEARRLQEQLARVAKGEAFLLQGGDCAESFADHGADNIR 82 (445)
T ss_pred cccCcchhhcCchhcCCCCCCHHHHHHHHHHHhcCCCeeecHHHHHHHHHHHHHhcCceEEEeCCcHHHHHHhcccHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHH
Q 009610 155 DTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSA 234 (531)
Q Consensus 155 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~Sa 234 (531)
+++++|+|||.||+|++++|||||||||||||||||+++|+.+|++|||||||||||.+|++++|.|||+||++||.+|+
T Consensus 83 d~frvllqMAvVLtfa~~~PVvKVgRIAGQfAKPRSs~~e~~g~vtLpsYRGDiiNG~e~~~~~R~pdP~R~l~aY~qsa 162 (445)
T COG3200 83 DNFRVLLQMAVVLTFAGSRPVVKVGRIAGQFAKPRSSDHEQLGGVTLPSYRGDIINGIEFDAEAREPDPERLLKAYAQSA 162 (445)
T ss_pred HHHHHHHHHHHHHHhccCCceEEeeeecccccCCCCCchhccCCeeccccccccccCccCChhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCccccccccccchhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccc
Q 009610 235 ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYE 314 (531)
Q Consensus 235 aTLn~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE 314 (531)
+|||+||||++||||||+.+|.||++||++|+++++|++|+++|+++|+||+|||++. .|.++.++||||||||||+||
T Consensus 163 AtlNLlRafa~gG~A~L~~vh~W~l~Fv~~sp~~~rY~~la~~I~~~l~FM~A~Gv~~-~~~lre~~~ytSHEaLLL~YE 241 (445)
T COG3200 163 ATLNLLRAFASGGLADLENVHRWNLGFVKNSPQGARYEALADRISETLAFMRACGVTN-DPSLRETEFYTSHEALLLDYE 241 (445)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHhCCCC-CcccccccchhhhHHHhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999987 567899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009610 315 QALTRRDSTSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRM 394 (531)
Q Consensus 315 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~Rm 394 (531)
+||||.|+++|.||+|||||+||||||||+|||||||+|||.|||||||||+|+||+|++||++|||+|+|||||||+||
T Consensus 242 eam~R~ds~s~~~Yd~SaHmlWIGeRTRq~D~AHVe~~rgv~NPig~K~GP~~~~d~ll~l~d~LnP~nepGRLtLi~Rm 321 (445)
T COG3200 242 EAMLRLDSTSGQWYDTSAHMLWIGERTRQPDGAHVEFLRGVKNPIGVKIGPSMTPDELLELIDRLNPHNEPGRLTLIARM 321 (445)
T ss_pred HHHhhhccCCCceeccccceeeecccccCCChhHHHHHHhcCCccccccCCCCCHHHHHHHHHhcCCCCCCceEEeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009610 395 GAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVT 474 (531)
Q Consensus 395 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VT 474 (531)
|++||.++||+||+||+++||+|||+||||||||+++++|+|||+|+.|++||++||+||+++|+|||||||||||+|||
T Consensus 322 G~dKV~d~LP~li~av~~eG~~VvWs~DPMHGNTi~a~~gyKTR~fd~Il~EV~sFfeihraeG~hpgGiHlEmTg~dVT 401 (445)
T COG3200 322 GADKVGDRLPPLVEAVEAEGHQVIWSSDPMHGNTIKASTGYKTRPFDRILDEVQSFFEIHRAEGTHPGGIHLEMTGEDVT 401 (445)
T ss_pred cchHHhhhhhHHHHHHHHcCCceEEecCCCCCceeecCCCCccccHHHHHHHHHHHHHHHHhccCCCCceEEEecCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHH
Q 009610 475 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 518 (531)
Q Consensus 475 ECvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~iA~~l~~ 518 (531)
||+||++.++++||..||+|+||||||++|||||||+|||+|++
T Consensus 402 EC~gga~~it~~~L~~rY~T~CDPRLNa~QaLELAflvAe~lk~ 445 (445)
T COG3200 402 ECLGGARAITETDLSDRYHTHCDPRLNADQALELAFLVAEMLKK 445 (445)
T ss_pred hhccCcccccccccccchhccCCCCcCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999974
No 5
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=97.82 E-value=0.0051 Score=64.99 Aligned_cols=175 Identities=19% Similarity=0.230 Sum_probs=124.3
Q ss_pred cccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHH-HHhCCCCCCC-----c-----------EE
Q 009610 327 YYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLV-EIFNPHNKAG-----R-----------IT 389 (531)
Q Consensus 327 ~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~-~~LnP~~~PG-----R-----------LT 389 (531)
|+.==--|+|||-||-+ +-.|.++++|+.-|||+|=|.+.+.++.+.-+ ..=+|+.-.| + .-
T Consensus 152 y~~dlvs~~~IGARt~e-sq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~~~H~fl~~~~~G~~~~i~t~GN~~~h 230 (349)
T PRK09261 152 YIADLISWGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAASAPHHFLGITKDGRSAIVSTTGNPDCH 230 (349)
T ss_pred HHHhhcceeeeccchhc-CHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHhCCceeeecCCCCcEEEEECCCCCCEE
Confidence 33334668999999998 79999999999999999999999999987665 2235554333 3 34
Q ss_pred EEeccCh---hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCcccee
Q 009610 390 IICRMGA---ENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHL 466 (531)
Q Consensus 390 LI~RmGa---~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHL 466 (531)
||-|-|. .--++.+=..+..+.+.|.+.-=|.||=|||..+. -+.=-.|+.+|.+.... -....=||-+
T Consensus 231 lilRGg~~~pNy~~~~i~~~~~~l~k~~l~~~v~VD~SH~ns~k~-----~~~Q~~V~~~v~~qi~~---G~~~I~GvMi 302 (349)
T PRK09261 231 VILRGGNKGPNYDAESVAEAKERLEKAGLPPRIMIDCSHANSGKD-----HKRQPEVARDVAAQIAA---GNKAIIGVMI 302 (349)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHcCCCCCEEEECCCcccCcc-----hhhhHHHHHHHHHHHHc---CCccceEEEE
Confidence 6667552 11234455567778888999889999999998543 23333455555544432 2223559999
Q ss_pred eecCCCcccccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHh
Q 009610 467 EMTGQNVTECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKK 519 (531)
Q Consensus 467 E~Tg~~VTECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~iA~~l~~~ 519 (531)
|.- =.+|.+.++. ...| .|--||=++-+...+|...+|+.++.+
T Consensus 303 ES~------l~~G~Q~~~~---~l~yG~SITD~Ci~w~~T~~ll~~la~~~~~~ 347 (349)
T PRK09261 303 ESH------LVEGNQDLPP---KLVYGQSITDACIGWEDTEALLRELAEAVRAR 347 (349)
T ss_pred EEe------cCcCCcCCCC---CCCCCcccccCCCChHHHHHHHHHHHHHHHHh
Confidence 965 2467777654 3455 588899999999999999999999753
No 6
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=97.78 E-value=0.013 Score=62.05 Aligned_cols=174 Identities=20% Similarity=0.229 Sum_probs=123.6
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHH-hCCCC-----CCCcE-----------EEEecc
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEI-FNPHN-----KAGRI-----------TIICRM 394 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~PGRL-----------TLI~Rm 394 (531)
-.|.+||-||-+ +--|.++++|+.-|||+|=|.+.+.++.+.-+.. =+|+. +-|+. -||-|-
T Consensus 158 vs~~aIGARt~e-sq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~~H~fl~~~~~G~~~iv~t~GN~~~hliLRG 236 (353)
T PRK12755 158 ISWGAIGARTTE-SQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQPHRFLGINQEGQVALLETRGNPDGHVILRG 236 (353)
T ss_pred hhheeeccchhc-CHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhCCCeeeeeCCCCcEEEEECCCCCCEEEEeCC
Confidence 557789999998 7999999999999999999999999998876532 34443 33333 455665
Q ss_pred Ch---hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCC
Q 009610 395 GA---ENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQ 471 (531)
Q Consensus 395 Ga---~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~ 471 (531)
|. .--++.+=.....+.++|.+.-=|.||=|||..+- -+.=-.|..+|..... +-.+..=||-+|.-
T Consensus 237 g~~~pNy~~~~i~~a~~~l~k~~l~~~vmVD~SH~Ns~K~-----~~~Q~~V~~~v~~qi~---~G~~~I~GvMiES~-- 306 (353)
T PRK12755 237 GKKGPNYDAASVAACEAQLEKAGLRPRLMIDCSHANSGKD-----YRRQPAVAEDVVAQIA---AGNRSIIGVMIESH-- 306 (353)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCcEEecCCccccccc-----hhhhHHHHHHHHHHHH---cCCCceEEEEEEEe--
Confidence 52 11234455667778899999999999999997543 3333455666655543 22234678988854
Q ss_pred CcccccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHhhc
Q 009610 472 NVTECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKKRL 521 (531)
Q Consensus 472 ~VTECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~iA~~l~~~~~ 521 (531)
=.+|.+.+.+. =...| .|--||=++-++..++...+|+.++.++.
T Consensus 307 ----l~~G~Q~~~~~-~~l~yG~SITD~Ci~W~~T~~ll~~la~~~~~r~~ 352 (353)
T PRK12755 307 ----LEEGNQSSPPL-SELKYGVSITDACIGWETTEALLRELAQALRARRA 352 (353)
T ss_pred ----ccccCcCCCCC-CCCcCCCccccccCChHHHHHHHHHHHHHHHHHhc
Confidence 24666665321 01355 58889999999999999999999987653
No 7
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=96.06 E-value=0.13 Score=54.66 Aligned_cols=169 Identities=20% Similarity=0.255 Sum_probs=111.0
Q ss_pred ceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHH-HHhCCCC-----CCCc-----------EEEEeccCh
Q 009610 334 MLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLV-EIFNPHN-----KAGR-----------ITIICRMGA 396 (531)
Q Consensus 334 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~-~~LnP~~-----~PGR-----------LTLI~RmGa 396 (531)
|.|||-||-+= --|-|+.+|+.-|||.|=|...+.++.+.-+ ..=+|+. .-|+ .-||-|-|.
T Consensus 154 w~aIGARt~es-q~hRelaSgl~~PVgfKngt~g~i~~al~Ai~aA~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~ 232 (344)
T TIGR00034 154 WGAIGARTTES-QVHRELASGLSCPVGFKNGTDGNLQVAIDAIRAAAAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGK 232 (344)
T ss_pred hccccCccccC-HHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHhCCceeeecCCCCcEEEEECCCCCCEEEEecCCC
Confidence 55999999763 5899999999999999999999999988654 3334443 2333 456667553
Q ss_pred h--HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009610 397 E--NMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVT 474 (531)
Q Consensus 397 ~--~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VT 474 (531)
. --+.-+-......+++|.+.--|+||=|||..+.- +.=-.+..+|-.... +-....=||-+|.--+
T Consensus 233 ~pNy~~~di~~~~~~l~~~~lp~~vmVD~SH~ns~k~~-----~~q~~va~~v~~qi~---~G~~~I~GvMiES~l~--- 301 (344)
T TIGR00034 233 KPNYSAADVAAAKKQLEKAGLPPHLMIDFSHGNSNKDH-----RRQPDVAEDVCEQIA---NGSKAIIGVMIESNLV--- 301 (344)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCeEEEeCCCcccccch-----hhhHHHHHHHHHHHH---cCCccceEEEEEecCC---
Confidence 1 01122333445557799998889999999986442 222233444433332 2222356898885432
Q ss_pred cccCCCCCCC-cccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHh
Q 009610 475 ECIGGSRTVT-FDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKK 519 (531)
Q Consensus 475 ECvGG~~~~~-e~dL~~rY-~T~CDPRLN~~QsLelaf~iA~~l~~~ 519 (531)
.|.+.+. ..+ -+| .|--||=++-++..++...+|+.++.+
T Consensus 302 ---~G~Q~~~~~~~--l~yG~SITD~Ci~W~~T~~ll~~la~~~~~r 343 (344)
T TIGR00034 302 ---EGNQSIPGGQP--LKYGQSITDACIGWEDTEALLRQLADAVRTR 343 (344)
T ss_pred ---cCCCCCCCCCc--CcCCCcCccccCChHHHHHHHHHHHHHHHhc
Confidence 3444331 112 244 588899999999999999999988754
No 8
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=94.69 E-value=0.56 Score=50.02 Aligned_cols=168 Identities=20% Similarity=0.246 Sum_probs=119.4
Q ss_pred eeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHH-hCCCC-----CCCcEE-----------EEeccCh--
Q 009610 336 WVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEI-FNPHN-----KAGRIT-----------IICRMGA-- 396 (531)
Q Consensus 336 WIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~PGRLT-----------LI~RmGa-- 396 (531)
+||-||-+ .--|-|+.+|+.-|||+|=|...+.+..+.-+.. =+|+. .-|+.. +|-|=|.
T Consensus 160 aIGARt~e-sq~hre~ASgls~PVgfKN~t~g~i~~aidAi~aa~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~P 238 (348)
T PRK12756 160 AIGARTTE-SQIHREMASALSCPVGFKNGTDGNTRIAIDAIRAARASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKP 238 (348)
T ss_pred hhcccccc-CHHHHHHHhcCCCceEecCCCCCCHHHHHHHHHHHhCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCC
Confidence 59999987 4569999999999999999999998887765544 45664 444444 4455441
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcccc
Q 009610 397 ENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTEC 476 (531)
Q Consensus 397 ~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTEC 476 (531)
.--.+.+-...++.+++|.+.--|.|==|||. |-+-+.=-.|++||-.... +-....-||-||- -=
T Consensus 239 NY~~~~v~~a~~~l~~~~l~~~imVDcSH~NS-----~K~~~~Q~~V~~~v~~qi~---~g~~~I~GvMiES------~L 304 (348)
T PRK12756 239 NYHAEDIAAACDTLREFDLPEHLVVDFSHGNC-----QKQHRRQLDVAEDICQQIR---NGSTAIAGIMAES------FL 304 (348)
T ss_pred CCCHHHHHHHHHHHHHCCCCCcEEEECCCccc-----CCCHHHHHHHHHHHHHHHH---cCCCeEEEEEEee------cc
Confidence 11122233456678899999999999999997 4455666677777766554 3445677998882 23
Q ss_pred cCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHh
Q 009610 477 IGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKK 519 (531)
Q Consensus 477 vGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~iA~~l~~~ 519 (531)
.+|.+.+. ..-..+| .|--||=++-++..++...+|+.++.+
T Consensus 305 ~~G~Q~~~-~~~~l~yG~SITD~Ci~W~~T~~ll~~la~a~~~r 347 (348)
T PRK12756 305 REGTQKIV-AGQPLTYGQSITDPCLGWEDTERLLELLAAAVDSR 347 (348)
T ss_pred cccCCCCC-CCCCCcCCCcccccccCHHHHHHHHHHHHHHHHhh
Confidence 45666551 1112355 588899999999999999999998754
No 9
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=93.99 E-value=1.2 Score=47.61 Aligned_cols=171 Identities=20% Similarity=0.237 Sum_probs=122.4
Q ss_pred ceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHH-hCCCC-----CCCcEE-----------EEeccCh
Q 009610 334 MLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEI-FNPHN-----KAGRIT-----------IICRMGA 396 (531)
Q Consensus 334 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~PGRLT-----------LI~RmGa 396 (531)
|.+||-||-+ .--|-++.+|+.=|||+|=|...+.+..+.-+.. =+|+. .-|+.. +|-|=|.
T Consensus 159 w~aIGARt~e-sq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~ 237 (356)
T PRK12822 159 WGAIGARTTE-SQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAARSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGR 237 (356)
T ss_pred hhhhccchhc-CHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHcCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCC
Confidence 4589999987 5689999999999999999999999988765544 46764 455553 4556441
Q ss_pred h--HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009610 397 E--NMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVT 474 (531)
Q Consensus 397 ~--~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VT 474 (531)
. --.+.+-...++.+++|.+.--|.|==|||.. -+-+.=-.|+.||-.... +-....=||-||-
T Consensus 238 ~PNY~~~~v~~a~~~l~~~~l~~~vmVDcSH~NS~-----K~~~~Q~~V~~~v~~q~~---~g~~~I~GvMiES------ 303 (356)
T PRK12822 238 EPNYGLSDVTKASKLLHDEGLNHRLIIDCSHGNSQ-----KVAKNQISVARELCDQLK---EGEGAIAGVMVES------ 303 (356)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcEEEECCCccCC-----CCHHHHHHHHHHHHHHHH---CCCCeEEEEEEee------
Confidence 0 01222334567788899999999999999974 445566667777766554 3345577998882
Q ss_pred cccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHhhc
Q 009610 475 ECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKKRL 521 (531)
Q Consensus 475 ECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~iA~~l~~~~~ 521 (531)
-=.+|.+.+...+ .+| .|--||=++-+...++...+|+.++.+++
T Consensus 304 ~L~~G~Q~~~~~~--l~yG~SITD~Ci~W~~T~~ll~~la~~~~~r~~ 349 (356)
T PRK12822 304 FLQGGSQKADSAP--LEYGQSVTDECLSWQDTEQLLNTLAEAVETRRQ 349 (356)
T ss_pred cccccCCCCCCCC--CcCCCccchhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 2345665532222 345 58889999999999999999999986544
No 10
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=93.38 E-value=0.064 Score=54.70 Aligned_cols=148 Identities=21% Similarity=0.230 Sum_probs=97.6
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCC-CCCc--EEEEeccCh--hHHHhhChHH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHN-KAGR--ITIICRMGA--ENMRVKLPHL 406 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~-~PGR--LTLI~RmGa--~~v~~~LP~L 406 (531)
.-++|||-||=+ +-.|.+.+++..-||++|=|..+++++.+.-.+.+-=.. .+|= --.|.|+|. .+...-+-.+
T Consensus 108 vd~lqIgAr~~~-n~~ll~~as~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~ 186 (270)
T PF00793_consen 108 VDWLQIGARLME-NQDLLEAASGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLRGGYGPNYNVLDIAAV 186 (270)
T ss_dssp ESEEEE-GGGTT-CHHHHHHHHCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEEESSSSSSEEHHTTHH
T ss_pred CcEEEECcchhc-CHHHHHHhccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeeeccccccccchhHHHH
Confidence 459999999977 789999999999999999999999999998887753222 1221 245788887 4444556666
Q ss_pred HHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcccccCCCCCCCcc
Q 009610 407 IRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFD 486 (531)
Q Consensus 407 I~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTECvGG~~~~~e~ 486 (531)
...-+.++.|| ++||=|+|.... |.+.-. |..-+++. .+.| .=||-+|.-.+. +
T Consensus 187 ~~~~~~~~lpV--ivD~SH~~~~~~--~~~q~~---V~~~a~aa----ia~G--idGlmiEsH~~p--~----------- 240 (270)
T PF00793_consen 187 PIMKKKTHLPV--IVDPSHANSRKD--GGRQEL---VPPLARAA----IAAG--IDGLMIESHPDP--G----------- 240 (270)
T ss_dssp HHHHHHTSSEE--EEEHHHHTTTCG--GGGHCG---HHHHHHHH----HHHT--ESEEEEEEESSG--G-----------
T ss_pred HHHHHhcCCCE--EECchhhhcccc--CCchhh---HHHHHHHH----Hhhc--CCEEEEeecCCc--c-----------
Confidence 77777776766 589999998655 222222 22222222 2345 789999864331 1
Q ss_pred ccccccccCCCC--CCChHhHHHHHHHH
Q 009610 487 DLSSRYHTHCDP--RLNASQSLELAFII 512 (531)
Q Consensus 487 dL~~rY~T~CDP--RLN~~QsLelaf~i 512 (531)
+..||+ -|.+.|+.++.-..
T Consensus 241 ------~a~~d~~~~l~~~~~~~~~~~~ 262 (270)
T PF00793_consen 241 ------KALSDGPQQLTYGQSITLLCIL 262 (270)
T ss_dssp ------GTSSSGGGSEEGGGHHHHHHHH
T ss_pred ------cCCCCCccCCCcchhHHHHHHH
Confidence 244554 36777777765443
No 11
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=91.55 E-value=0.36 Score=50.28 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCceeeccccCCCCchhHHHh---hhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChH
Q 009610 332 AHMLWVGERTRQLDGAHVEFL---RGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR---MGAENMRVKLPH 405 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVefl---rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R---mGa~~v~~~LP~ 405 (531)
..++|||-|.=| --++| .+...||=||=|-.++|+|.+.-++.+.-...+ +|.|+-| ||..+.---+-.
T Consensus 107 ~DilQIgAr~~r----qtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~-~viLcERG~tFgy~~lv~D~r~ 181 (290)
T PLN03033 107 ADIIQIPAFLCR----QTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNP-NVMVCERGTMFGYNDLIVDPRN 181 (290)
T ss_pred CcEEeeCcHHHH----HHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCcCCCCcccchhh
Confidence 489999999864 25566 677889999999999999999999998655443 6777766 455432111111
Q ss_pred HHHHHHHCCCceEEEcCCCCC
Q 009610 406 LIRAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 406 LI~AV~~aG~~ViW~cDPMHG 426 (531)
|-.++..+.||| +||=|+
T Consensus 182 -ip~mk~~~lPVI--~DpSHs 199 (290)
T PLN03033 182 -LEWMREANCPVV--ADITHS 199 (290)
T ss_pred -hHHHHhcCCCEE--EeCCcc
Confidence 123356899995 899995
No 12
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.26 E-value=1 Score=46.02 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=65.5
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec----c-ChhHHHhhChHH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR----M-GAENMRVKLPHL 406 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R----m-Ga~~v~~~LP~L 406 (531)
.-++|||=|+=+ +-.+++.+++..-||++|=|..++++|++.-++.+--... ..+.|+-| + +...-.-.|- .
T Consensus 111 vd~~kIga~~~~-n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn-~~i~L~~rG~~t~~~Y~~~~vdl~-~ 187 (266)
T PRK13398 111 ADMLQIGSRNMQ-NFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGN-ENVVLCERGIRTFETYTRNTLDLA-A 187 (266)
T ss_pred CCEEEECccccc-CHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCC-CeEEEEECCCCCCCCCCHHHHHHH-H
Confidence 358999999876 5679999999999999999999999999999998842222 26999998 3 2322212222 2
Q ss_pred HHHHH-HCCCceEEEcCCCCCCc
Q 009610 407 IRAVR-REGQIVTWVCDPMHGNT 428 (531)
Q Consensus 407 I~AV~-~aG~~ViW~cDPMHGNT 428 (531)
|...+ ..+.||+ +||=|+|.
T Consensus 188 i~~lk~~~~~pV~--~D~sHs~G 208 (266)
T PRK13398 188 VAVIKELSHLPII--VDPSHATG 208 (266)
T ss_pred HHHHHhccCCCEE--EeCCCccc
Confidence 33333 4477765 56679984
No 13
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=89.41 E-value=0.89 Score=47.49 Aligned_cols=64 Identities=20% Similarity=0.420 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCc-EEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCC
Q 009610 364 SDKMDPNELVKLVEIFNPHNKAGR-ITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGN 427 (531)
Q Consensus 364 GP~~~p~elv~L~~~LnP~~~PGR-LTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGN 427 (531)
|+.++++||.+|.+-|--+|--+= =.|-.=.|.-..-+..-.+|+++++..-+++|+|||.=|.
T Consensus 59 G~~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGD 123 (308)
T KOG2599|consen 59 GQVLNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGD 123 (308)
T ss_pred ccccCHHHHHHHHHHHhhccccccceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccC
Confidence 899999999999999854443211 1122334444555667789999999999999999999885
No 14
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=87.50 E-value=2.2 Score=43.93 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=59.7
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHHH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR---MGAENMRVKLPHLIR 408 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R---mGa~~v~~~LP~LI~ 408 (531)
..++|||-|.=|= -.=+.-+.+..-||=||=|..++|+|.+--++.+.-...+ +|.|+-| ||..+.---+-. |-
T Consensus 93 vDilQIgArn~rn-~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~-~viLcERG~tf~y~r~~~D~~~-ip 169 (258)
T TIGR01362 93 VDIIQIPAFLCRQ-TDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNK-NILLCERGTSFGYNNLVVDMRS-LP 169 (258)
T ss_pred CcEEEeCchhcch-HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCcCCCCcccchhh-hH
Confidence 6799999986441 2223334445589999999999999999999998655443 6777655 454332111111 22
Q ss_pred HHHHCCCceEEEcCCCCC
Q 009610 409 AVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 409 AV~~aG~~ViW~cDPMHG 426 (531)
.+++.+.||| +||=|+
T Consensus 170 ~~k~~~~PVi--~DpSHs 185 (258)
T TIGR01362 170 IMRELGCPVI--FDATHS 185 (258)
T ss_pred HHHhcCCCEE--EeCCcc
Confidence 3456688885 899996
No 15
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=87.23 E-value=1.6 Score=46.69 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=66.5
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-----c-ChhHHHhhChH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR-----M-GAENMRVKLPH 405 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R-----m-Ga~~v~~~LP~ 405 (531)
.-++|||-|.=| +-..++.+....-||-+|=|.+++++|+..-++.+.-... .+|.|.-| - +.-+-.--|-.
T Consensus 185 ~d~lqIga~~~~-n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn-~~viL~erG~rtf~s~y~~~~~dl~a 262 (352)
T PRK13396 185 ADVIQVGARNMQ-NFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGN-PNVILCERGIRTFDRQYTRNTLDLSV 262 (352)
T ss_pred CCeEEECccccc-CHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEecCCccCcCCCCCCCcCHHH
Confidence 478999999877 5778888899999999999999999999999999953333 36999988 3 33322122333
Q ss_pred HHHHHHH-CCCceEEEcCCCCC
Q 009610 406 LIRAVRR-EGQIVTWVCDPMHG 426 (531)
Q Consensus 406 LI~AV~~-aG~~ViW~cDPMHG 426 (531)
|..+++ .+.|| +|||-|+
T Consensus 263 -i~~lk~~~~lPV--i~DpsH~ 281 (352)
T PRK13396 263 -IPVLRSLTHLPI--MIDPSHG 281 (352)
T ss_pred -HHHHHHhhCCCE--EECCccc
Confidence 333444 47776 5899997
No 16
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=85.05 E-value=4.3 Score=43.06 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=69.4
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc-----ChhHHHhhChHH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRM-----GAENMRVKLPHL 406 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~Rm-----Ga~~v~~~LP~L 406 (531)
.-++|||-|+=| +-.|++.+++..-||.+|=|.+++.+|++.-++.+--... .++.|+-|- +..+-.--|-.+
T Consensus 177 vd~lqIgAr~~~-N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN-~~viL~erG~~tf~~~~~~~ldl~ai 254 (335)
T PRK08673 177 VDILQIGARNMQ-NFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGN-PNVILCERGIRTFETATRNTLDLSAV 254 (335)
T ss_pred CCeEEECccccc-CHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEECCCCCCCCcChhhhhHHHH
Confidence 358999999877 6889999999999999999999999999999999853322 269999881 333333334444
Q ss_pred HHHHHHCCCceEEEcCCCCCCcc
Q 009610 407 IRAVRREGQIVTWVCDPMHGNTI 429 (531)
Q Consensus 407 I~AV~~aG~~ViW~cDPMHGNT~ 429 (531)
...-+..+.||+ .||=|++..
T Consensus 255 ~~lk~~~~lPVi--~d~sH~~G~ 275 (335)
T PRK08673 255 PVIKKLTHLPVI--VDPSHATGK 275 (335)
T ss_pred HHHHHhcCCCEE--EeCCCCCcc
Confidence 433344687774 677799654
No 17
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=84.86 E-value=2.2 Score=44.43 Aligned_cols=65 Identities=17% Similarity=0.364 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHHhCC--CCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc
Q 009610 364 SDKMDPNELVKLVEIFNP--HNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNT 428 (531)
Q Consensus 364 GP~~~p~elv~L~~~LnP--~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT 428 (531)
|..+.+|++.++++-|+= .+.-=...|..=||...--+.+=.+|++||++.=+++|+|||.=|..
T Consensus 50 g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~ 116 (281)
T COG2240 50 GIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDP 116 (281)
T ss_pred CcCCCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCC
Confidence 556789999999999875 44444667888899888888899999999999888999999998864
No 18
>PRK05756 pyridoxamine kinase; Validated
Probab=84.13 E-value=2.4 Score=42.43 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=52.1
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCC--CCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCC
Q 009610 361 IKVSDKMDPNELVKLVEIFNPHNK--AGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGN 427 (531)
Q Consensus 361 vKvGP~~~p~elv~L~~~LnP~~~--PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGN 427 (531)
.=.|+.++++++.++++.+.-.+. +....++.=+|.....+.+=.+|+.+++.|..++|+|||.=|.
T Consensus 48 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d 116 (286)
T PRK05756 48 KWTGCVMPPSHLTEIVQGIADIGWLGECDAVLSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGD 116 (286)
T ss_pred CccCeeCCHHHHHHHHHHHHhcCccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCcccc
Confidence 335788888999999887733222 4557777778888888889999999999888899999998554
No 19
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=83.58 E-value=5.4 Score=41.33 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=60.7
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHHH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR---MGAENMRVKLPHLIR 408 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R---mGa~~v~~~LP~LI~ 408 (531)
..++|||-|.=|= -.=+.=+.+..-||=||=|..++|+|.+--++.+.-...+ +|.|+-| ||..+.---+- -|-
T Consensus 101 ~DilQIgArn~rn-~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~-~vilcERG~tf~y~r~~~D~~-~vp 177 (264)
T PRK05198 101 VDVLQIPAFLCRQ-TDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGND-KIILCERGTSFGYNNLVVDMR-GLP 177 (264)
T ss_pred CcEEEECchhcch-HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-eEEEEeCCCCcCCCCeeechh-hhH
Confidence 7899999987442 2223334455789999999999999999999998655443 6777766 44432211111 123
Q ss_pred HHHHCCCceEEEcCCCCC
Q 009610 409 AVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 409 AV~~aG~~ViW~cDPMHG 426 (531)
.+++.+.||| +||=|+
T Consensus 178 ~~k~~~lPVi--~DpSHs 193 (264)
T PRK05198 178 IMRETGAPVI--FDATHS 193 (264)
T ss_pred HHhhCCCCEE--EeCCcc
Confidence 4556788885 899996
No 20
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=83.22 E-value=2.8 Score=41.88 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=50.8
Q ss_pred eCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCC
Q 009610 363 VSDKMDPNELVKLVEIF--NPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDP 423 (531)
Q Consensus 363 vGP~~~p~elv~L~~~L--nP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDP 423 (531)
.|+.++++++.++++.+ .-.-.+....++.=++.....+.+=.+++..++.|..++|+|||
T Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dp 112 (286)
T TIGR00687 50 TGQVLPPDELTELVDGLAAINKLNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDP 112 (286)
T ss_pred cCeECCHHHHHHHHHHHHhcCccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECC
Confidence 68889999999999998 22223667778888888887888889999999988889999999
No 21
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=81.32 E-value=6.4 Score=39.45 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=78.0
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHH--------HhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCC
Q 009610 363 VSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENM--------RVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCG 434 (531)
Q Consensus 363 vGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v--------~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G 434 (531)
|+|.++.+.|.++.+.|+-.++|==|.+|.++...+- ...+=..++.+++.|..|+ |||=|.+..++
T Consensus 9 VsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~-----lHGYtHq~~~~ 83 (243)
T PF10096_consen 9 VSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIV-----LHGYTHQYGNS 83 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEE-----EEecceecCCC
Confidence 6889999999999999999999999999999765554 4566677788889999998 99998877444
Q ss_pred cccc-------------chhHHHHHHHHHHHHHHhhCCcCccc
Q 009610 435 LKTR-------------PFDAILAEVRAFFDVHEQEGSHPGGI 464 (531)
Q Consensus 435 ~KTR-------------~f~~Il~Ev~~ff~vh~~~Gs~~GGv 464 (531)
..-. .-+...+-|..-+++..+.|-.|-|+
T Consensus 84 ~sg~~~ef~~~~~~~~~~~~~a~~ri~~gl~~l~~~gi~p~~f 126 (243)
T PF10096_consen 84 VSGDGFEFWDSEFDAGDSEEEAKERIEKGLEILAELGIYPVGF 126 (243)
T ss_pred cccccceeccccccccCCHHHHHHHHHHHHHHHHHCCCcccEE
Confidence 3321 22456666788999999999999886
No 22
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=80.65 E-value=3.2 Score=42.18 Aligned_cols=104 Identities=19% Similarity=0.353 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++.+...+|-+.+..+|.| .+++-..|--|+-.+=.+.+ |.|. |..| +=.|.|.+
T Consensus 135 ei~~~i~~~~~aA~~a~~aGfD-------gveih~~~gyL~~qFlsp~~n~R~d~-----yGgs-----~enr~r~~--- 194 (327)
T cd02803 135 EIEQIIEDFAAAARRAKEAGFD-------GVEIHGAHGYLLSQFLSPYTNKRTDE-----YGGS-----LENRARFL--- 194 (327)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEcchhhhHHHHhcCccccCCCcc-----cCCC-----HHHHHHHH---
Confidence 4456666777777777778875 45788888777766666653 4343 3323 12566543
Q ss_pred hHHHhhhcc-----C-CceeeeCCC------CCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009610 348 HVEFLRGIA-----N-PLGIKVSDK------MDPNELVKLVEIFNPHNKAGRITIICRMG 395 (531)
Q Consensus 348 HVeflrgI~-----N-PIGvKvGP~------~~p~elv~L~~~LnP~~~PGRLTLI~RmG 395 (531)
.|-++.|+ + ||+||+.|. .+++|.+++++.|.... ..=|.+..+..
T Consensus 195 -~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G-~d~i~vs~g~~ 252 (327)
T cd02803 195 -LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAG-VDALHVSGGSY 252 (327)
T ss_pred -HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCCC
Confidence 34444443 3 999999986 47899999999987554 34555555544
No 23
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=80.27 E-value=43 Score=36.10 Aligned_cols=183 Identities=20% Similarity=0.259 Sum_probs=120.4
Q ss_pred CCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHH-hCCCC-----CCCcEEE-----
Q 009610 322 STSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEI-FNPHN-----KAGRITI----- 390 (531)
Q Consensus 322 ~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~PGRLTL----- 390 (531)
+.+..|++=-=-|-=||-||-. +--|=|..+|+.=|||-|=|-+-+-.-.+.-+.. =+|+. ..|+..+
T Consensus 147 ~ispqy~aDLiSwgAIGARTtE-SQ~HRe~ASGLs~PvGFKNgTdGnl~vAidAi~AA~~~H~Fl~~~k~G~~aiv~T~G 225 (351)
T COG0722 147 PISPQYLADLISWGAIGARTTE-SQIHRELASGLSCPVGFKNGTDGNLKVAIDAIRAAAHPHHFLSVTKDGQVAIVETSG 225 (351)
T ss_pred cCcHHHHHHHHHHhhccccchh-hHHHHHHhhccCCCccccCCCCccHHHHHHHHHHhhCCceeeecCCCCceEEEEccC
Confidence 4444444322223339999975 6789999999999999999988777665554443 46663 6666654
Q ss_pred ------EeccChh---HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcC
Q 009610 391 ------ICRMGAE---NMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHP 461 (531)
Q Consensus 391 ------I~RmGa~---~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~ 461 (531)
|-|=|.. -=.+.+-.-++..+++|.+.--|.|==|||.-+ +-|.=-+|.+.|-+ -...-....
T Consensus 226 Np~~HvILRGG~~~PNYda~~v~~~~~~l~~~gl~~~lmID~SH~NS~K-----~~~~Q~~V~~~v~~---Qi~~G~~~I 297 (351)
T COG0722 226 NPDGHVILRGGKKGPNYDAASVAAACEQLEKAGLPPRLMIDCSHANSGK-----DYRRQPKVARDVCQ---QIAAGERAI 297 (351)
T ss_pred CCCceEEecCCCCCCCCCHHHHHHHHHHHHHcCCCCeEEEeccCCcccc-----ChhhhHHHHHHHHH---HHhcCCcee
Confidence 6676632 111223345677789999999999999999744 44444444443322 222333556
Q ss_pred ccceeeecCCCcccccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHhh
Q 009610 462 GGIHLEMTGQNVTECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKKR 520 (531)
Q Consensus 462 GGvHLE~Tg~~VTECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~iA~~l~~~~ 520 (531)
=||-+|- --..|.+.+... ....| .|--||=++-+++..|...+|+.++.++
T Consensus 298 ~GvMiES------~L~eG~Q~~~~~-~~l~yG~SITDaCigWe~Te~ll~~la~av~~r~ 350 (351)
T COG0722 298 RGVMIES------HLVEGRQDLVQG-QPLKYGVSITDACIGWEDTEALLRELAEAVRARR 350 (351)
T ss_pred EEEEehh------hhhhcCcCCCCC-CCCcCCcccccccCChhhHHHHHHHHHHHHHhhc
Confidence 7787772 223455443322 25566 4888999999999999999999998765
No 24
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=73.91 E-value=10 Score=38.64 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=65.8
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-c----ChhHHHhhChHH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR-M----GAENMRVKLPHL 406 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R-m----Ga~~v~~~LP~L 406 (531)
.-++|||-|+=+ +-.+++.+++..-||.||-|..++++|+..-++.+--... .+|.|+-| . +...-.-.|-.+
T Consensus 109 ~d~lkI~s~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~l~~rG~s~y~~~~~~~~dl~~i 186 (260)
T TIGR01361 109 ADILQIGARNMQ-NFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGN-GNVILCERGIRTFEKATRNTLDLSAV 186 (260)
T ss_pred CCEEEECccccc-CHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEECCCCCCCCCCcCCcCHHHH
Confidence 358999988744 4559999999999999999999999999999999953222 36999988 2 433333334444
Q ss_pred HHHHHHCCCceEEEcCCCCC
Q 009610 407 IRAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 407 I~AV~~aG~~ViW~cDPMHG 426 (531)
..--+..+.||++ ||=|.
T Consensus 187 ~~lk~~~~~pV~~--ds~Hs 204 (260)
T TIGR01361 187 PVLKKETHLPIIV--DPSHA 204 (260)
T ss_pred HHHHHhhCCCEEE--cCCCC
Confidence 4333446888875 66686
No 25
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=72.22 E-value=32 Score=36.16 Aligned_cols=90 Identities=22% Similarity=0.288 Sum_probs=62.1
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHHH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR---MGAENMRVKLPHLIR 408 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R---mGa~~v~~~LP~LI~ 408 (531)
..++|||-|.=|= -.=+.-+..-.-||=||=|..++|+|.+--++.+-=...+ +|.|+-| +|..+.---+ .-|-
T Consensus 107 vDilQIgAr~~rn-tdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~-~vilcERG~~fgy~~~~~D~-~~ip 183 (281)
T PRK12457 107 ADVLQVPAFLARQ-TDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGND-RVILCERGSSFGYDNLVVDM-LGFR 183 (281)
T ss_pred CeEEeeCchhhch-HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-eEEEEeCCCCCCCCCcccch-HHHH
Confidence 7899999987441 2233344455689999999999999999999998655443 7877755 4554431111 1233
Q ss_pred HHHHC--CCceEEEcCCCCC
Q 009610 409 AVRRE--GQIVTWVCDPMHG 426 (531)
Q Consensus 409 AV~~a--G~~ViW~cDPMHG 426 (531)
.+++. +.||| +||=|+
T Consensus 184 ~mk~~~t~lPVi--~DpSHs 201 (281)
T PRK12457 184 QMKRTTGDLPVI--FDVTHS 201 (281)
T ss_pred HHHhhCCCCCEE--EeCCcc
Confidence 46664 88995 899996
No 26
>PTZ00344 pyridoxal kinase; Provisional
Probab=68.90 E-value=12 Score=37.89 Aligned_cols=64 Identities=14% Similarity=0.334 Sum_probs=45.7
Q ss_pred eeCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCC
Q 009610 362 KVSDKMDPNELVKLVEIFNPHN--KAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMH 425 (531)
Q Consensus 362 KvGP~~~p~elv~L~~~LnP~~--~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMH 425 (531)
=.||..+++++.++++.|.-.. ..-...++.=++...+.+.+=.+++..++.|-.+.++|||-=
T Consensus 52 ~~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~ 117 (296)
T PTZ00344 52 IKGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVM 117 (296)
T ss_pred ccCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCcc
Confidence 3478888888888888885322 233777888888777766666666666667766788899864
No 27
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=67.78 E-value=12 Score=36.43 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=48.7
Q ss_pred cCCcee-eeCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHC--CCceEEEcCCC
Q 009610 356 ANPLGI-KVSDKMDPNELVKLVEIFNPHN--KAGRITIICRMGAENMRVKLPHLIRAVRRE--GQIVTWVCDPM 424 (531)
Q Consensus 356 ~NPIGv-KvGP~~~p~elv~L~~~LnP~~--~PGRLTLI~RmGa~~v~~~LP~LI~AV~~a--G~~ViW~cDPM 424 (531)
.|+-++ ..||..+++++.++++.+.=.. .+..+.++.=++.....+.+=.+++..++. |.+| ++||-
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~v--v~Dpv 111 (254)
T cd01173 40 NHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGYLGSAEQVEAVAEIVKRLKEKNPNLLY--VCDPV 111 (254)
T ss_pred CCCCCCCCCCeecCHHHHHHHHHHHHHcCCcccCCEEEEecCCCHHHHHHHHHHHHHHHHhCCCceE--EECCC
Confidence 455566 8899999999888887764322 334677777777778888888888888776 5544 68993
No 28
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=67.78 E-value=6.6 Score=41.26 Aligned_cols=90 Identities=21% Similarity=0.308 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++.+..-+|-.....+|.| .+++...|--|+=.|=.+.+ |.|...|.+- .|+|-+
T Consensus 136 eI~~ii~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlSp~~N~RtD~yGGsle----------nR~Rf~--- 195 (337)
T PRK13523 136 QIKETVLAFKQAAVRAKEAGFD-------VIEIHGAHGYLINEFLSPLSNKRTDEYGGSPE----------NRYRFL--- 195 (337)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHhcCCccCCcCCCCCCCHH----------HHHHHH---
Confidence 4455666666666666777765 45889999888877777766 6665444311 366542
Q ss_pred hHHHhhhccC----CceeeeCC------CCCHHHHHHHHHHhC
Q 009610 348 HVEFLRGIAN----PLGIKVSD------KMDPNELVKLVEIFN 380 (531)
Q Consensus 348 HVeflrgI~N----PIGvKvGP------~~~p~elv~L~~~Ln 380 (531)
.|-+++|++ ||+||+.+ +.+++|.+++++.|.
T Consensus 196 -~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~ 237 (337)
T PRK13523 196 -REIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMK 237 (337)
T ss_pred -HHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHH
Confidence 344444444 89999998 467888888888885
No 29
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=65.72 E-value=7.9 Score=41.21 Aligned_cols=89 Identities=24% Similarity=0.346 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecc-cccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 271 YQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSH-ECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 271 y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSH-EaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
-+++.+..-+|-.....+|.| .+++-..| -.|+=.+=++.| |.|...|. +=.|+|-+
T Consensus 145 I~~ii~~f~~AA~ra~~AGfD-------gVEih~ah~GyLl~qFLSp~~N~RtDeyGGs----------lenR~rf~--- 204 (382)
T cd02931 145 VETFVGKFGESAVIAKEAGFD-------GVEIHAVHEGYLLDQFTISLFNKRTDKYGGS----------LENRLRFA--- 204 (382)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEEeccccChHHHHhcCCccCCCCCcCCCC----------HHHHhHHH---
Confidence 345555555565666667765 45888888 455545555544 44443222 22577764
Q ss_pred hHHHhhhccC------CceeeeCC--------------------CCCHHHHHHHHHHhC
Q 009610 348 HVEFLRGIAN------PLGIKVSD--------------------KMDPNELVKLVEIFN 380 (531)
Q Consensus 348 HVeflrgI~N------PIGvKvGP--------------------~~~p~elv~L~~~Ln 380 (531)
+|-+++|++ |||||+.| ..+++|.+++++.|+
T Consensus 205 -~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~ 262 (382)
T cd02931 205 -IEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILE 262 (382)
T ss_pred -HHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHH
Confidence 788888864 89999986 246677777777764
No 30
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=64.52 E-value=8.5 Score=41.99 Aligned_cols=87 Identities=17% Similarity=0.093 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHH-------hCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc-ccCCCCccc
Q 009610 366 KMDPNELVKLVEI-------FNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNT-IKAPCGLKT 437 (531)
Q Consensus 366 ~~~p~elv~L~~~-------LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT-~~~~~G~KT 437 (531)
.+|++|+..+.+. ||....+|.+.=++=.|-+.- ..-+.+.--|.+.|.+| |||||- +++.+|
T Consensus 47 GeT~eEi~g~t~Am~~~~~~l~~~~~~~~~vD~~gTGGdG~-~iSt~~a~ivAa~Gv~V-----aKhgnR~lss~~G--- 117 (405)
T TIGR02644 47 GMTDEETAYLTKAMIDSGEVLDLSSLPGPKVDKHSTGGVGD-KVSLVLGPIVAACGVKV-----AKMSGRGLGHTGG--- 117 (405)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCcccCCCeeEEeCCCCCCC-CchHHHHHHHHhCCCCE-----EeeCCCCCCCcch---
Confidence 4789999888776 454444465544444443321 23455566677899999 699995 333445
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009610 438 RPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI 477 (531)
Q Consensus 438 R~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTECv 477 (531)
..|+.++ .||+.++++.+++.+|+
T Consensus 118 ------------TaD~LE~----lgG~~v~ls~e~~~~~l 141 (405)
T TIGR02644 118 ------------TIDKLES----IPGFRTELSEAEFIEIV 141 (405)
T ss_pred ------------HHHHHHh----cCCCCCCCCHHHHHHHH
Confidence 3344443 47889999999888885
No 31
>PLN02978 pyridoxal kinase
Probab=63.63 E-value=14 Score=38.11 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHhCCCCC-CCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 009610 365 DKMDPNELVKLVEIFNPHNK-AGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 365 P~~~p~elv~L~~~LnP~~~-PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 426 (531)
-.++++++..+++-+...+. --.-.+|.-+|.....+.+-.+++..++.+..+.|+|||-=|
T Consensus 65 ~~~~~~~~~~~l~~~~~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~ 127 (308)
T PLN02978 65 QVLDGEQLWALIEGLEANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLG 127 (308)
T ss_pred eeCCHHHHHHHHHHHHHcCCcccCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCccc
Confidence 34567888888887765443 245678888998888898999999998888889999999744
No 32
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.30 E-value=13 Score=39.58 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++.+..-+|-+-...+|.| .+++-..|--|+=.+=++.+ |.|...|.+ =.|+|-+
T Consensus 138 eI~~ii~~f~~AA~~a~~aGfD-------gVeih~ahGyLl~qFLSp~~N~RtDeYGGsl----------enR~Rf~--- 197 (361)
T cd04747 138 DIDDVIAAFARAAADARRLGFD-------GIELHGAHGYLIDQFFWAGTNRRADGYGGSL----------AARSRFA--- 197 (361)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEecccchHHHHhcCCCCCCCCCCCCCCH----------HHHHHHH---
Confidence 4455566665666666667765 45889999888877777777 777654432 2476643
Q ss_pred hHHHhhhccC------CceeeeCC----------CCCHHHHHHHHHHhC
Q 009610 348 HVEFLRGIAN------PLGIKVSD----------KMDPNELVKLVEIFN 380 (531)
Q Consensus 348 HVeflrgI~N------PIGvKvGP----------~~~p~elv~L~~~Ln 380 (531)
.|-+++|++ |||||++| ..+++|.+++|..|+
T Consensus 198 -~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~ 245 (361)
T cd04747 198 -AEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLV 245 (361)
T ss_pred -HHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHH
Confidence 445555543 89999997 367888888988886
No 33
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=58.40 E-value=13 Score=39.00 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeeccccccccccccc--ccccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQAL--TRRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~al--tR~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++.+...+|-.....+|.| .+++-..|--||=.|=.+. .|.|...|. +=.|.|.+
T Consensus 131 eI~~i~~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlsp~~N~RtD~yGGs----------lenR~r~~--- 190 (353)
T cd02930 131 EIEQTIEDFARCAALAREAGYD-------GVEIMGSEGYLINQFLAPRTNKRTDEWGGS----------FENRMRFP--- 190 (353)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEecccchHHHHhcCCccCCCcCccCCC----------HHHHhHHH---
Confidence 4455666666666666777875 4588788877777676665 355554333 22577765
Q ss_pred hHHHhhhccC------CceeeeCCC------CCHHHHHHHHHHhCCCC
Q 009610 348 HVEFLRGIAN------PLGIKVSDK------MDPNELVKLVEIFNPHN 383 (531)
Q Consensus 348 HVeflrgI~N------PIGvKvGP~------~~p~elv~L~~~LnP~~ 383 (531)
+|.++.|++ ||+||+++. .+++|.+++++.|....
T Consensus 191 -~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G 237 (353)
T cd02930 191 -VEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAG 237 (353)
T ss_pred -HHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcC
Confidence 555555554 578888864 68999999999997654
No 34
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.93 E-value=13 Score=39.09 Aligned_cols=90 Identities=19% Similarity=0.313 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++.+...+|-.....+|.| .+++-..|--|+=.+=.+.+ |.|...| | +=.|+|-+
T Consensus 138 eI~~ii~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlsp~~N~R~D~yGG-----s-----lenR~r~~--- 197 (353)
T cd04735 138 EIEDIIDAFGEATRRAIEAGFD-------GVEIHGANGYLIQQFFSPHSNRRTDEWGG-----S-----LENRMRFP--- 197 (353)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHhcCCccCCCCcccCC-----c-----HHHHHHHH---
Confidence 3445566666666666677765 45888888887777767766 5555333 3 12566643
Q ss_pred hHHHhhhccC----------CceeeeCCC------CCHHHHHHHHHHhC
Q 009610 348 HVEFLRGIAN----------PLGIKVSDK------MDPNELVKLVEIFN 380 (531)
Q Consensus 348 HVeflrgI~N----------PIGvKvGP~------~~p~elv~L~~~Ln 380 (531)
.|-++.|++ |||||+++. ++++|.++++..|+
T Consensus 198 -~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~ 245 (353)
T cd04735 198 -LAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLA 245 (353)
T ss_pred -HHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHH
Confidence 456666654 677888873 45677777777764
No 35
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=53.80 E-value=5.5 Score=43.37 Aligned_cols=47 Identities=30% Similarity=0.624 Sum_probs=34.0
Q ss_pred ccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCC--cccCCCCcccc------------chhHHHHHHHH
Q 009610 393 RMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGN--TIKAPCGLKTR------------PFDAILAEVRA 449 (531)
Q Consensus 393 RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGN--T~~~~~G~KTR------------~f~~Il~Ev~~ 449 (531)
|+||+-+...+|. .-||++|||-+| ++-...|+|++ .|+.++++++.
T Consensus 108 ~~~A~fl~~~~~~----------~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~ 168 (396)
T COG1448 108 RVAADFLARFFPD----------ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKT 168 (396)
T ss_pred HHHHHHHHHhCCC----------ceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHh
Confidence 5556666555542 339999999999 77778899985 46777777765
No 36
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=53.79 E-value=21 Score=38.63 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=39.6
Q ss_pred CCCChhHHHHHHHHHHH-----------HHHHHHhhhc-CCccccccccccchhhhccCchhhHHHHHHHHHHHHHhHHH
Q 009610 219 RVPDPERLIRAYCQSAA-----------TLNLLRSFAT-GGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMA 286 (531)
Q Consensus 219 R~PDP~Rll~aY~~Saa-----------TLn~lRa~~~-gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~~al~Fm~ 286 (531)
=.-||-|||+|+..++. |+++++.... +.++.+....-| .++..+...-...+++|.
T Consensus 128 F~EDPLRILRa~RFaarL~~~gF~ie~eT~~~i~~~~~~~~L~~vs~ERI~-----------~El~kiL~~p~~~l~~L~ 196 (360)
T PRK13296 128 FIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTGELNHLTRERLH-----------IEFVKALNNPKIFFTTLK 196 (360)
T ss_pred cccCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhhhhhhhcCCHHHHH-----------HHHHHHHhChHHHHHHHH
Confidence 36799999999999884 8888886542 323332221112 233333333455788899
Q ss_pred HhcCCCC
Q 009610 287 AAGLTLD 293 (531)
Q Consensus 287 a~G~~~~ 293 (531)
.+|+-..
T Consensus 197 ~~glL~~ 203 (360)
T PRK13296 197 ELEALKI 203 (360)
T ss_pred HcCCHHH
Confidence 9987653
No 37
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=52.55 E-value=18 Score=38.36 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeeccccccccccccc--ccccCCCCCcccCCCCceeeccccCCCCc
Q 009610 269 DRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQAL--TRRDSTSGQYYDCSAHMLWVGERTRQLDG 346 (531)
Q Consensus 269 ~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~al--tR~d~~~g~~Y~~SaH~lWIGeRTRqlDg 346 (531)
++-+++.+..-+|-+....+|.| .+++...|--|+=.+=++. .|.|...|.+ =.|+|-
T Consensus 152 ~eI~~ii~~f~~AA~rA~~AGfD-------GVEIh~ahGyLl~qFLSp~~N~RtDeYGGsl----------ENR~Rf--- 211 (362)
T PRK10605 152 EEIPGIVNDFRQAIANAREAGFD-------LVELHSAHGYLLHQFLSPSSNQRTDQYGGSV----------ENRARL--- 211 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-------EEEEcccccchHHHhcCCcCCCCCCcCCCcH----------HHHHHH---
Confidence 35566777777777888888876 4588899988877777777 4666655542 247764
Q ss_pred hhHHHhhhccC-----CceeeeCCC---------CCHHH-HHHHHHHhC
Q 009610 347 AHVEFLRGIAN-----PLGIKVSDK---------MDPNE-LVKLVEIFN 380 (531)
Q Consensus 347 AHVeflrgI~N-----PIGvKvGP~---------~~p~e-lv~L~~~Ln 380 (531)
-+|-+++|+. +||||+.|. .+++| .+++|..|.
T Consensus 212 -~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~ 259 (362)
T PRK10605 212 -VLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLG 259 (362)
T ss_pred -HHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHH
Confidence 3566666665 789999763 56677 577777774
No 38
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.93 E-value=29 Score=27.05 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEE
Q 009610 381 PHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTW 419 (531)
Q Consensus 381 P~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW 419 (531)
+...+|.-.++.|+-.+... .++++.++.|+.|+|
T Consensus 36 ~~~~~~~~~v~i~v~~~~~~----~~~~~L~~~G~~v~~ 70 (72)
T cd04883 36 PSKEEDNKILVFRVQTMNPR----PIIEDLRRAGYEVLW 70 (72)
T ss_pred ccCCCCeEEEEEEEecCCHH----HHHHHHHHCCCeeeC
Confidence 44456777777787533322 899999999999999
No 39
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=50.74 E-value=53 Score=28.56 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=43.1
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 009610 361 IKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQ--IVTWVC 421 (531)
Q Consensus 361 vKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~--~ViW~c 421 (531)
+-.|+.++++++++.+...+|+ +..|+=+-...+ ..++.+++++++.+. ..||+.
T Consensus 31 ~~lg~~~~~~~l~~~~~~~~pd-----vV~iS~~~~~~~-~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 31 IDLGVDVPPEEIVEAAKEEDAD-----AIGLSGLLTTHM-TLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred EECCCCCCHHHHHHHHHHcCCC-----EEEEeccccccH-HHHHHHHHHHHHcCCCCCeEEEE
Confidence 4559999999999999999885 677776633444 667999999999986 456665
No 40
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=50.12 E-value=25 Score=37.09 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=43.9
Q ss_pred HHHhhChHHHHHHHHCCCceEEE---cCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHh
Q 009610 398 NMRVKLPHLIRAVRREGQIVTWV---CDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQ 456 (531)
Q Consensus 398 ~v~~~LP~LI~AV~~aG~~ViW~---cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~ 456 (531)
--++..|+|-+|--+.|..=+.+ +||=+.=. -.++=+.-..|+++++|++...++..+
T Consensus 217 G~Re~V~~larAAvA~GaDGlfiEvHpdP~~Als-Dg~q~l~~~~l~~ll~~l~~i~~~~~~ 277 (290)
T PLN03033 217 GLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPV-DGPTQWPLRHLEELLEELIAIARVTKG 277 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEecCCccccCC-CcccCcCHHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999876666 56665533 123457788899999999988887765
No 41
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=48.32 E-value=65 Score=33.60 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHH
Q 009610 369 PNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVR 448 (531)
Q Consensus 369 p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 448 (531)
.++|.+|++.|.--..--++++-+|+-...-....+.++++.+++|.+ +|+ =+|+|.. .+ +.+|+.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i--~l~~~h~---~e--------l~~~~~ 217 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYV--ALHANHA---RE--------LTAEAR 217 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEE--EecCCCh---hh--------cCHHHH
Confidence 678999999986432233677888863332234578999999999966 566 3677742 22 247788
Q ss_pred HHHHHHHhhCCcCccceeeecC--CCcccccCCCCCCCccccccccccCCCCC-------CChHhHHHHHHHHHHHH
Q 009610 449 AFFDVHEQEGSHPGGIHLEMTG--QNVTECIGGSRTVTFDDLSSRYHTHCDPR-------LNASQSLELAFIIAERL 516 (531)
Q Consensus 449 ~ff~vh~~~Gs~~GGvHLE~Tg--~~VTECvGG~~~~~e~dL~~rY~T~CDPR-------LN~~QsLelaf~iA~~l 516 (531)
..++..++.|-..+.--+=+.| +|+.+-..=...+.+-....-|-..|||- ++.+++.++...+..++
T Consensus 218 ~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~ 294 (321)
T TIGR03822 218 AACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRI 294 (321)
T ss_pred HHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhC
Confidence 8888888877432221111111 33222110000111123334677889887 66677777655444433
No 42
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.86 E-value=81 Score=28.34 Aligned_cols=53 Identities=8% Similarity=0.067 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEE--------eccChhHHHhhChHHHHHHHH--CCCceEEEcC
Q 009610 368 DPNELVKLVEIFNPHNKAGRITII--------CRMGAENMRVKLPHLIRAVRR--EGQIVTWVCD 422 (531)
Q Consensus 368 ~p~elv~L~~~LnP~~~PGRLTLI--------~RmGa~~v~~~LP~LI~AV~~--aG~~ViW~cD 422 (531)
+.+++.+-++..- ...| .+.+| .++..+...+.|-.+|+++++ .+.+|+|++=
T Consensus 33 ~~~~~~~~l~~~~-~~~p-d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~ 95 (169)
T cd01828 33 TTRGLLARLDEDV-ALQP-KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSI 95 (169)
T ss_pred cHHHHHHHHHHHh-ccCC-CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3444544444333 2344 55555 346789999999999999999 8889999763
No 43
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=47.56 E-value=32 Score=35.37 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=65.2
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc--ChhHHHhhCh--HHH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRM--GAENMRVKLP--HLI 407 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~Rm--Ga~~v~~~LP--~LI 407 (531)
.-++|||-|+=+ +-..++.+++..-||-||=|..++++|+...++.+--... .+|.|+-|. |-..-.+... .-|
T Consensus 99 vdilqIgs~~~~-n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn-~~i~L~eRg~~~Y~~~~~n~~dl~ai 176 (250)
T PRK13397 99 LDVIQVGARNMQ-NFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGK-SNIILCERGVRGYDVETRNMLDIMAV 176 (250)
T ss_pred CCEEEECccccc-CHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEccccCCCCCccccccCHHHH
Confidence 458999999876 5678888888899999999999999999999999863333 379999875 3222111011 223
Q ss_pred HHHHH-CCCceEEEcCCCCC
Q 009610 408 RAVRR-EGQIVTWVCDPMHG 426 (531)
Q Consensus 408 ~AV~~-aG~~ViW~cDPMHG 426 (531)
..+++ .+.||+ +||=|.
T Consensus 177 ~~lk~~~~lPVi--vd~SHs 194 (250)
T PRK13397 177 PIIQQKTDLPII--VDVSHS 194 (250)
T ss_pred HHHHHHhCCCeE--ECCCCC
Confidence 34444 777876 588886
No 44
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=46.27 E-value=14 Score=35.34 Aligned_cols=108 Identities=23% Similarity=0.413 Sum_probs=72.0
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHH--HHHHHHHHHHhcCCeeEEecCCccchhhhcChhhHHHHHHH--HH
Q 009610 86 KALQLPEYPDKAQLETVLKTLEDFPPLVFAGEA--RSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRV--LL 161 (531)
Q Consensus 86 pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei--~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~~k~~~--Ll 161 (531)
..-|....+|..+ +...|+...|+|+.+|+ +.+++.+-. +|+ +.||. ..|.+.|.+++.+ +.
T Consensus 27 ri~~~V~v~~tp~---~~gML~kV~~yV~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~~ie 92 (152)
T TIGR01309 27 RVNHCVLYPETPT---YLGMLQKVKDYVTWGEIDEDTLELLIRK--RGR---LVGGD------KVTDEYVKEVTGYESVD 92 (152)
T ss_pred cCCCEEEEeCCHH---HHHHHHHhHhheeEecCCHHHHHHHHHH--hcc---ccCCC------cCCHHHHHHHcCCccHH
Confidence 3445566677644 55666777899999985 556666665 454 23654 4566778887665 77
Q ss_pred HHHHHHhhcC-------CCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCC
Q 009610 162 QMGVVLMFGG-------QMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNIN 210 (531)
Q Consensus 162 qMa~vL~~g~-------~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN 210 (531)
.|+..|..+. =+|+.|.-=--|-|.+-+..++ .+|-.+- ||||-||
T Consensus 93 dl~~~i~~~~~~f~~~~~~~~FrL~pPr~G~~~~~k~~~--~~gG~~G-~r~~~In 145 (152)
T TIGR01309 93 ELAKALVEGEIKLSEAGLKPVFRLHPPRKGFKGGIKTPY--RDGGELG-YRGEKIN 145 (152)
T ss_pred HHHHHHHcCCCCccccCccCceeCCCCCccccccccccc--ccCCCCc-ccHHHHH
Confidence 7777775543 4677777766788875555666 3454555 9999999
No 45
>PLN03007 UDP-glucosyltransferase family protein
Probab=45.51 E-value=45 Score=36.50 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=28.8
Q ss_pred CCcEEEEeccChhH--HHhhChHHHHHHHHCCCceEEEcCC
Q 009610 385 AGRITIICRMGAEN--MRVKLPHLIRAVRREGQIVTWVCDP 423 (531)
Q Consensus 385 PGRLTLI~RmGa~~--v~~~LP~LI~AV~~aG~~ViW~cDP 423 (531)
|.|=++..=||... -.+.|-.++++....|++++|+..+
T Consensus 283 ~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~ 323 (482)
T PLN03007 283 KPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRK 323 (482)
T ss_pred CCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 33445555678542 2567888999999999999999985
No 46
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=45.51 E-value=25 Score=36.62 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=31.5
Q ss_pred CCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009610 357 NPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMG 395 (531)
Q Consensus 357 NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmG 395 (531)
=||.||++|..+.+++.++++.|.-...-| |+++.|+.
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~-I~~~n~~~ 240 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDG-IIATNTTI 240 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcE-EEEECCcc
Confidence 499999999999889999999987655554 88888874
No 47
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=44.00 E-value=61 Score=30.42 Aligned_cols=62 Identities=16% Similarity=0.350 Sum_probs=40.0
Q ss_pred eeeCCCCCHH---HHHHHHHHhCCCCCCCcEEEEe--ccChhH-----HHhhChHHHHHHHHCCCce-EEEcC
Q 009610 361 IKVSDKMDPN---ELVKLVEIFNPHNKAGRITIIC--RMGAEN-----MRVKLPHLIRAVRREGQIV-TWVCD 422 (531)
Q Consensus 361 vKvGP~~~p~---elv~L~~~LnP~~~PGRLTLI~--RmGa~~-----v~~~LP~LI~AV~~aG~~V-iW~cD 422 (531)
+|..+...++ .++++++..+.....+|+.+++ -.|.+. .....+.+|+..++.|.+| +|-+|
T Consensus 86 iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sf~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtvn 158 (179)
T cd08555 86 IKQDSPEYDEFLAKVLKELRVYFDYDLRGKVVLSSFNALGVDYYNFSSKLIKDTELIASANKLGLLSRIWTVN 158 (179)
T ss_pred eCCCCCcchHHHHHHHHHHHHcCCcccCCCEEEEeecccCCChhcccchhhcCHHHHHHHHHCCCEEEEEeeC
Confidence 5655544443 4444444444322668999888 344443 2346899999999999986 79776
No 48
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=42.21 E-value=74 Score=34.15 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=64.3
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc-------ChhHHHhhCh
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRM-------GAENMRVKLP 404 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~Rm-------Ga~~v~~~LP 404 (531)
.-++|||-|+=+ +-..++++++..-||-+|=|..++++|+..-++.+-=... .+|.|.-|. |...+ -|-
T Consensus 202 vd~lkI~s~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~L~erg~s~yp~~~~~~l--dl~ 277 (360)
T PRK12595 202 VDVIQIGARNMQ-NFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGN-GQIILCERGIRTYEKATRNTL--DIS 277 (360)
T ss_pred CCeEEECccccc-CHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCC-CCEEEECCccCCCCCCCCCCc--CHH
Confidence 458999988765 4678888888899999999999999999999999853222 368888765 33333 233
Q ss_pred HHHHHHHHCCCceEEEcCCCCC
Q 009610 405 HLIRAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 405 ~LI~AV~~aG~~ViW~cDPMHG 426 (531)
.+..--+..|.||++ ||=|.
T Consensus 278 ~i~~lk~~~~~PV~~--d~~Hs 297 (360)
T PRK12595 278 AVPILKQETHLPVMV--DVTHS 297 (360)
T ss_pred HHHHHHHHhCCCEEE--eCCCC
Confidence 333333347889875 66685
No 49
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=41.92 E-value=1.1e+02 Score=31.88 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=58.9
Q ss_pred HHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHH
Q 009610 372 LVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFF 451 (531)
Q Consensus 372 lv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff 451 (531)
+-+|++.|+-.+.|.=.-++. .+.+.-|.+|+++.++||.+.. ||-+-....++ .-+...+||....
T Consensus 79 ~~RiLdlL~~~gv~aTffv~g-----~~~e~~P~~v~~i~~~GHEIg~-----Hg~~H~~~~~l---s~~~e~~~i~~s~ 145 (297)
T TIGR03212 79 FWRLLRLFTERGIPVTVFGVA-----MALARNPEAVAAMKEAGWEIAS-----HGLRWIDYQDM---DEAQEREHIAEAI 145 (297)
T ss_pred HHHHHHHHHHcCCCEEEEeEH-----HHHHHCHHHHHHHHHcCCEEee-----ccccCcccccC---CHHHHHHHHHHHH
Confidence 556677777677774444443 4567889999999999999974 88765443333 5688899999999
Q ss_pred HHHHh-hCCcCccc
Q 009610 452 DVHEQ-EGSHPGGI 464 (531)
Q Consensus 452 ~vh~~-~Gs~~GGv 464 (531)
++.++ .|..|-|-
T Consensus 146 ~~i~~~tG~~P~G~ 159 (297)
T TIGR03212 146 RLHTEVTGERPLGW 159 (297)
T ss_pred HHHHHHhCCCCceE
Confidence 99887 57777664
No 50
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=41.89 E-value=31 Score=39.91 Aligned_cols=90 Identities=24% Similarity=0.403 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++.+...+|-.....+|.| .+++-..|--|+=.+=.+++ |.|...|. + =.|+|-+
T Consensus 545 eI~~~i~~f~~aA~~a~~aGfD-------gveih~ahGyLl~qFlsp~~N~RtD~yGGs-l---------enR~r~~--- 604 (765)
T PRK08255 545 DMDRVRDDFVAAARRAAEAGFD-------WLELHCAHGYLLSSFISPLTNQRTDEYGGS-L---------ENRLRYP--- 604 (765)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEecccchHHHHhcCCCCCCCCCCCCCC-H---------HHHhHHH---
Confidence 3556666666666666777765 45888888888777777765 66654332 1 1466643
Q ss_pred hHHHhhhccC------CceeeeCC------CCCHHHHHHHHHHhC
Q 009610 348 HVEFLRGIAN------PLGIKVSD------KMDPNELVKLVEIFN 380 (531)
Q Consensus 348 HVeflrgI~N------PIGvKvGP------~~~p~elv~L~~~Ln 380 (531)
+|-++.|+. ||+||+.+ ..+++|.+++++.|.
T Consensus 605 -~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~ 648 (765)
T PRK08255 605 -LEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFK 648 (765)
T ss_pred -HHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHH
Confidence 344555443 89999997 456777777777775
No 51
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=41.48 E-value=32 Score=36.10 Aligned_cols=90 Identities=26% Similarity=0.413 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++.+..-+|-.....+|.| .+++-..|-.|+=.+=.+.+ |.|...| | +=.|+|.
T Consensus 135 eI~~ii~~f~~AA~ra~~aGfD-------gVeih~ahGyLl~qFlsp~~N~RtD~yGG-----s-----lenR~r~---- 193 (343)
T cd04734 135 DIEEIIAAFADAARRCQAGGLD-------GVELQAAHGHLIDQFLSPLTNRRTDEYGG-----S-----LENRMRF---- 193 (343)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHhhCCCcCCCCCcCCC-----C-----HHHHhHH----
Confidence 3445555555555555567765 45888999888777766655 5555433 2 3367765
Q ss_pred hHHHhhhccC------CceeeeCCC------CCHHHHHHHHHHhC
Q 009610 348 HVEFLRGIAN------PLGIKVSDK------MDPNELVKLVEIFN 380 (531)
Q Consensus 348 HVeflrgI~N------PIGvKvGP~------~~p~elv~L~~~Ln 380 (531)
.+|-+++|+. ||+||+|+. .+++|.+++++.|+
T Consensus 194 ~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~ 238 (343)
T cd04734 194 LLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLA 238 (343)
T ss_pred HHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHH
Confidence 3555555543 578888874 45777777777775
No 52
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=40.14 E-value=1.7e+02 Score=28.39 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHH
Q 009610 368 DPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEV 447 (531)
Q Consensus 368 ~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev 447 (531)
++.|+++.+....| .=+++.++|-| ...++...++|...+.++++.+- +.-..+ --|.-+..++++
T Consensus 52 ~~~~~i~~l~~~~~---~~~~~~l~~~~--------~~~i~~a~~~g~~~i~i~~~~s~-~~~~~~--~~~~~~~~~~~~ 117 (265)
T cd03174 52 DDWEVLRAIRKLVP---NVKLQALVRNR--------EKGIERALEAGVDEVRIFDSASE-THSRKN--LNKSREEDLENA 117 (265)
T ss_pred CHHHHHHHHHhccC---CcEEEEEccCc--------hhhHHHHHhCCcCEEEEEEecCH-HHHHHH--hCCCHHHHHHHH
Confidence 44556666555554 33787888887 55678888999999999998763 211111 114455567777
Q ss_pred HHHHHHHHhhCCcCccceeeecCCCcccc
Q 009610 448 RAFFDVHEQEGSHPGGIHLEMTGQNVTEC 476 (531)
Q Consensus 448 ~~ff~vh~~~Gs~~GGvHLE~Tg~~VTEC 476 (531)
..+.+..++.| +.+++.-.+++-|
T Consensus 118 ~~~i~~a~~~G-----~~v~~~~~~~~~~ 141 (265)
T cd03174 118 EEAIEAAKEAG-----LEVEGSLEDAFGC 141 (265)
T ss_pred HHHHHHHHHCC-----CeEEEEEEeecCC
Confidence 77777777764 7788877777777
No 53
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=38.38 E-value=82 Score=30.36 Aligned_cols=65 Identities=15% Similarity=0.324 Sum_probs=53.8
Q ss_pred HHHHHHHh--CCCCCCCcEEEEeccChh---HHHhhChHHHHHHHHCCCceEEEcCC-CCCCcccCCCCccc
Q 009610 372 LVKLVEIF--NPHNKAGRITIICRMGAE---NMRVKLPHLIRAVRREGQIVTWVCDP-MHGNTIKAPCGLKT 437 (531)
Q Consensus 372 lv~L~~~L--nP~~~PGRLTLI~RmGa~---~v~~~LP~LI~AV~~aG~~ViW~cDP-MHGNT~~~~~G~KT 437 (531)
++++||.+ +|.+ .=.+.|||.--.. +-.+.|-.|=+....-|..+.|..|+ +|.--+.+.+|.+.
T Consensus 38 l~~F~El~vk~~~~-~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~gI~~~~~f~~tiHDR~I~~~nGw~I 108 (148)
T cd02685 38 FLRFCELVVKPPCE-LKYIHLVTGEDEDNGKQQIEALEEIKQSLASHGVEFTWEFSDTIHDREIRTDNGWII 108 (148)
T ss_pred HHHHHHHHhcCccc-eEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEECCCccceEEEecCCeEE
Confidence 67777775 4555 5599999998766 44677888999999999999999986 89999999999775
No 54
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=38.09 E-value=1.1e+02 Score=27.24 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=41.9
Q ss_pred eeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC-c-eEEEc
Q 009610 360 GIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQ-I-VTWVC 421 (531)
Q Consensus 360 GvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~-~-ViW~c 421 (531)
-+-.|+..+++++++.+...+|+ +..|+=+-... ...++.+++++++.|. . ++|++
T Consensus 30 vi~lG~~vp~e~~~~~a~~~~~d-----~V~iS~~~~~~-~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 30 VIYTGLRQTPEEIVEAAIQEDVD-----VIGLSSLSGGH-MTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred EEECCCCCCHHHHHHHHHHcCCC-----EEEEcccchhh-HHHHHHHHHHHHhcCCCCCEEEEE
Confidence 45689999999999999988874 55565443334 4568999999999987 4 45554
No 55
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=37.59 E-value=36 Score=36.16 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeeccccccccccccc--ccccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQAL--TRRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~al--tR~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+=+++.+...+|-+....+|.| .+++-..|--|+=.+=++. .|.|...|. + =.|+|-+
T Consensus 144 eI~~ii~~f~~AA~ra~~aGfD-------gVEih~ahGyLl~QFlSp~~N~RtD~yGGs-l---------enR~Rf~--- 203 (370)
T cd02929 144 DIKRVRRWYVDAALRARDAGFD-------IVYVYAAHGYLPLQFLLPRYNKRTDEYGGS-L---------ENRARFW--- 203 (370)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEcccccchHHHhhCccccCCccccCCC-h---------HhhhHHH---
Confidence 3445666666666666777875 4588888887877777777 455544332 1 2577754
Q ss_pred hHHHhhhccC------CceeeeCCC--------CCHHHHHHHHHHhC
Q 009610 348 HVEFLRGIAN------PLGIKVSDK--------MDPNELVKLVEIFN 380 (531)
Q Consensus 348 HVeflrgI~N------PIGvKvGP~--------~~p~elv~L~~~Ln 380 (531)
+|-+++|++ ||+||++|. .+.+|.+++++.|.
T Consensus 204 -~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~ 249 (370)
T cd02929 204 -RETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLD 249 (370)
T ss_pred -HHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 566666553 789999863 36888888888886
No 56
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.03 E-value=48 Score=34.50 Aligned_cols=92 Identities=26% Similarity=0.472 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCc
Q 009610 269 DRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDG 346 (531)
Q Consensus 269 ~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDg 346 (531)
++-+++.+..-+|-+....+|.| .+++-..|--|+=.+=.+.+ |.|. |..| +=.|+|-+
T Consensus 142 ~eI~~~i~~~~~aA~ra~~aGfD-------gVeih~a~gyLl~qFlsp~~N~R~D~-----yGGs-----lenR~rf~-- 202 (338)
T cd04733 142 EEIEDVIDRFAHAARLAQEAGFD-------GVQIHAAHGYLLSQFLSPLTNKRTDE-----YGGS-----LENRARLL-- 202 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-------EEEEchhhhhHHHHhcCCcCCCCCcc-----CCCC-----HHHHHHHH--
Confidence 34555666666666777778875 45788888777777777774 4444 3323 23677753
Q ss_pred hhHHHhhhcc------CCceeeeCC------CCCHHHHHHHHHHhCC
Q 009610 347 AHVEFLRGIA------NPLGIKVSD------KMDPNELVKLVEIFNP 381 (531)
Q Consensus 347 AHVeflrgI~------NPIGvKvGP------~~~p~elv~L~~~LnP 381 (531)
+|-++.|+ -||+||+.+ ..+++|.+++++.|.-
T Consensus 203 --~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~ 247 (338)
T cd04733 203 --LEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEE 247 (338)
T ss_pred --HHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHH
Confidence 44555554 289999974 5688888888888864
No 57
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=36.16 E-value=42 Score=35.26 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009610 357 NPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMG 395 (531)
Q Consensus 357 NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmG 395 (531)
=||.||++|..+.+++.++++.+.-... -=|+++.|.-
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Ga-dgi~~~nt~~ 249 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGI-DGVIATNTTL 249 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCC-cEEEEeCCcc
Confidence 4999999999999999999999875544 3688888873
No 58
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=35.83 E-value=52 Score=33.82 Aligned_cols=51 Identities=27% Similarity=0.451 Sum_probs=38.2
Q ss_pred hhHHHhhhcc----CCceeeeCCCCCHHHHHHHHHHhCCCC-CCCcEEEEeccChh
Q 009610 347 AHVEFLRGIA----NPLGIKVSDKMDPNELVKLVEIFNPHN-KAGRITIICRMGAE 397 (531)
Q Consensus 347 AHVeflrgI~----NPIGvKvGP~~~p~elv~L~~~LnP~~-~PGRLTLI~RmGa~ 397 (531)
...+.++.|+ =||.||+.|..+.+++.++++.|.-.- -.-=||+|-+++..
T Consensus 144 ~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~ 199 (294)
T cd04741 144 ATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNG 199 (294)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCcc
Confidence 4556666553 499999999999999999999997541 22348888888643
No 59
>PRK07394 hypothetical protein; Provisional
Probab=34.95 E-value=33 Score=36.37 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHhC----CCCCC-C-cEEEEeccChhHH---HhhChHHHHHHHHCCCceEEEcCCCCCCcccCC-CCccc
Q 009610 368 DPNELVKLVEIFN----PHNKA-G-RITIICRMGAENM---RVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAP-CGLKT 437 (531)
Q Consensus 368 ~p~elv~L~~~Ln----P~~~P-G-RLTLI~RmGa~~v---~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~-~G~KT 437 (531)
|+|||...++.+. |-..| . .+..|+=-|-|.- -...+..--.+.+.|.+|+ +|||.-.++ +|+.+
T Consensus 57 T~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~-----kHGnr~~ssk~Gvts 131 (342)
T PRK07394 57 TPEELAGMLDTYDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVV-----LHGGDRMPTKYGVPL 131 (342)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEE-----EECCCCCCCCCCchH
Confidence 7888888777643 11111 1 3445554554432 2333444455678999998 899965444 47555
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcCccceeee-cCCCcccccC
Q 009610 438 RPFDAILAEVRAFFDVHEQEGSHPGGIHLEM-TGQNVTECIG 478 (531)
Q Consensus 438 R~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~-Tg~~VTECvG 478 (531)
.||+ ++. ||.+++ |.++|.+|+-
T Consensus 132 ---aDvL----------e~L-----Gv~~~~~~~~~~~~~l~ 155 (342)
T PRK07394 132 ---VELW----------QGL-----GVDLTGLSLEQVQEGFE 155 (342)
T ss_pred ---HHHH----------HHC-----CCCCCCCCHHHHHHHHH
Confidence 4444 333 788998 9999999954
No 60
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=34.80 E-value=41 Score=35.48 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=39.3
Q ss_pred ccccCCCCchhHHHhhhcc-----------CCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009610 338 GERTRQLDGAHVEFLRGIA-----------NPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMG 395 (531)
Q Consensus 338 GeRTRqlDgAHVeflrgI~-----------NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmG 395 (531)
|.|..|-.....+.++.|+ =||.||++|.++-+++.++++.+.-...- =|++|-++-
T Consensus 181 ~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~Gad-Gi~l~NT~~ 248 (335)
T TIGR01036 181 GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGID-GVIATNTTV 248 (335)
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCc-EEEEECCCC
Confidence 4444444455555555553 59999999999988888888877543333 488888874
No 61
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=34.70 E-value=71 Score=34.49 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=7.8
Q ss_pred CCCceEEEcCCCCCCc
Q 009610 413 EGQIVTWVCDPMHGNT 428 (531)
Q Consensus 413 aG~~ViW~cDPMHGNT 428 (531)
++.+| ++|+|||.+
T Consensus 170 ~~~kV--vvD~~~G~~ 183 (443)
T PRK10887 170 RGLKI--VVDCANGAT 183 (443)
T ss_pred CCCEE--EEECCCchH
Confidence 34444 456666655
No 62
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=34.17 E-value=41 Score=34.90 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=75.2
Q ss_pred HHHhhhccC----CceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCC
Q 009610 349 VEFLRGIAN----PLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPM 424 (531)
Q Consensus 349 VeflrgI~N----PIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPM 424 (531)
.+.++.|+. ||.||+.|.++..++.+.++.+.-+...| ++.|-++|...+ +|+-
T Consensus 146 ~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~-i~~~nt~~~~~~---------------------iD~~ 203 (310)
T PRK02506 146 EQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAF-VNCINSIGNGLV---------------------IDPE 203 (310)
T ss_pred HHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEE-EEEeccCCCceE---------------------EecC
Confidence 456666655 99999999999999999998887665443 444455543211 1222
Q ss_pred CCCcc----cCCCCccccchhHHHHHHHHHHHHHHhhC-Cc----CccceeeecCCCccccc-CCCCCCCcccccccccc
Q 009610 425 HGNTI----KAPCGLKTRPFDAILAEVRAFFDVHEQEG-SH----PGGIHLEMTGQNVTECI-GGSRTVTFDDLSSRYHT 494 (531)
Q Consensus 425 HGNT~----~~~~G~KTR~f~~Il~Ev~~ff~vh~~~G-s~----~GGvHLE~Tg~~VTECv-GG~~~~~e~dL~~rY~T 494 (531)
|+... ....|+-.+....+ .++..++++++.+ .. .||| +|++||-|++ -|+ ++-.-|+.
T Consensus 204 ~~~~~~~~~~~~GGlSG~~i~p~--al~~v~~~~~~~~~~ipIig~GGI---~s~~da~e~i~aGA------~~Vqv~ta 272 (310)
T PRK02506 204 DETVVIKPKNGFGGIGGDYIKPT--ALANVRAFYQRLNPSIQIIGTGGV---KTGRDAFEHILCGA------SMVQVGTA 272 (310)
T ss_pred CCCccccCCCCCCcCCchhccHH--HHHHHHHHHHhcCCCCCEEEECCC---CCHHHHHHHHHcCC------CHHhhhHH
Confidence 22111 11234444444333 2344445665554 22 4898 4999999997 222 22222222
Q ss_pred CCCCCCChHhHHHHHHHHHHHHHHhh
Q 009610 495 HCDPRLNASQSLELAFIIAERLRKKR 520 (531)
Q Consensus 495 ~CDPRLN~~QsLelaf~iA~~l~~~~ 520 (531)
+- +-++...-++...+.+.+.++.
T Consensus 273 ~~--~~gp~~~~~i~~~L~~~l~~~g 296 (310)
T PRK02506 273 LH--KEGPAVFERLTKELKAIMAEKG 296 (310)
T ss_pred HH--HhChHHHHHHHHHHHHHHHHhC
Confidence 11 1234555556666666666543
No 63
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=33.25 E-value=98 Score=33.42 Aligned_cols=63 Identities=25% Similarity=0.264 Sum_probs=32.9
Q ss_pred ceeee----CCCCCHHHHHHHHHHhCCC-------CCCCcEEEEeccChhHHHhhChHHHHH-----HHHCCCceEEEcC
Q 009610 359 LGIKV----SDKMDPNELVKLVEIFNPH-------NKAGRITIICRMGAENMRVKLPHLIRA-----VRREGQIVTWVCD 422 (531)
Q Consensus 359 IGvKv----GP~~~p~elv~L~~~LnP~-------~~PGRLTLI~RmGa~~v~~~LP~LI~A-----V~~aG~~ViW~cD 422 (531)
.|||+ |-..++++..++-+.++.. ...|+++- ..+ +..++=.|.+. ++..+.+| ++|
T Consensus 107 ngiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~~~~~g~i~~-~~~----~~~Y~~~l~~~~~~~~i~~~~~ki--vvd 179 (461)
T cd05800 107 NGVKVKPAFGGSALPEITAAIEARLASGEPPGLEARAEGLIET-IDP----KPDYLEALRSLVDLEAIREAGLKV--VVD 179 (461)
T ss_pred CeEEEeCCCCCcCChHHHHHHHHHHhhccccccccccCCceee-cCC----HHHHHHHHHHHhChhhhhcCCceE--EEe
Confidence 47887 5556666655555544422 34566652 222 23333333333 33455555 579
Q ss_pred CCCCCc
Q 009610 423 PMHGNT 428 (531)
Q Consensus 423 PMHGNT 428 (531)
+|||-+
T Consensus 180 ~~~G~~ 185 (461)
T cd05800 180 PMYGAG 185 (461)
T ss_pred CCCCCc
Confidence 999965
No 64
>PLN02826 dihydroorotate dehydrogenase
Probab=32.53 E-value=49 Score=36.15 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=37.8
Q ss_pred ccccCCCCchhHHHhhhc-------------cCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 009610 338 GERTRQLDGAHVEFLRGI-------------ANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR 393 (531)
Q Consensus 338 GeRTRqlDgAHVeflrgI-------------~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R 393 (531)
|.|.-|-.....++++.| .=||-||++|.++.+++.++++.+--....| |++|-.
T Consensus 231 glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dG-Ii~~NT 298 (409)
T PLN02826 231 GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDG-LIISNT 298 (409)
T ss_pred CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCE-EEEEcc
Confidence 455555444556666655 2499999999999999999888765444444 555543
No 65
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=31.95 E-value=62 Score=35.00 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=8.6
Q ss_pred HCCCceEEEcCCCCCCc
Q 009610 412 REGQIVTWVCDPMHGNT 428 (531)
Q Consensus 412 ~aG~~ViW~cDPMHGNT 428 (531)
.++.+|++ |+|||.+
T Consensus 175 ~~~~kVvv--D~~~Ga~ 189 (450)
T PRK14314 175 LKGLKIVL--DCANGAA 189 (450)
T ss_pred CCCCEEEE--ECCCchH
Confidence 34555544 7777754
No 66
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.93 E-value=1.4e+02 Score=27.49 Aligned_cols=28 Identities=32% Similarity=0.585 Sum_probs=24.5
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCC
Q 009610 397 ENMRVKLPHLIRAVRREGQIVTWVCDPM 424 (531)
Q Consensus 397 ~~v~~~LP~LI~AV~~aG~~ViW~cDPM 424 (531)
+...+.|-.+|+.+++.|.+|+|++.|.
T Consensus 91 ~~~~~~l~~lv~~~~~~~~~vili~~pp 118 (200)
T cd01829 91 EEYRQRIDELLNVARAKGVPVIWVGLPA 118 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4677888999999999999999999864
No 67
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=29.63 E-value=40 Score=34.59 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=33.5
Q ss_pred HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcc---ccchhHHHHHHH
Q 009610 398 NMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLK---TRPFDAILAEVR 448 (531)
Q Consensus 398 ~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~K---TR~f~~Il~Ev~ 448 (531)
.+.+.+=..+++..++|..+|+++||..+.+.-++.=++ -..+..|+++|+
T Consensus 177 ~i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~ 230 (339)
T PRK06252 177 FVTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVK 230 (339)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhc
Confidence 334455556777778899999999999887777764443 233344444443
No 68
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=29.46 E-value=47 Score=33.28 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=30.0
Q ss_pred CCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009610 357 NPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMG 395 (531)
Q Consensus 357 NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmG 395 (531)
=||.||++|..+.+|+.++++.|.-.. .-=|+++.|++
T Consensus 163 ~pv~vKl~~~~~~~~~~~~a~~l~~~G-ad~i~~~~~~~ 200 (289)
T cd02810 163 IPLLVKLSPYFDLEDIVELAKAAERAG-ADGLTAINTIS 200 (289)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcC-CCEEEEEcccC
Confidence 389999999999999999999987444 34567776654
No 69
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=28.66 E-value=93 Score=31.38 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHH
Q 009610 365 DKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAIL 444 (531)
Q Consensus 365 P~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il 444 (531)
.+++.+|-.+|++..- +..+||+.+|.-.|+...++.+ .+.+.+++.|..-+=+.-|++... + -
T Consensus 49 ~~Lt~~Er~~l~~~~~-~~~~~~~~vi~gv~~~st~~~i-~~a~~a~~~Gad~v~v~~P~~~~~--s------------~ 112 (289)
T PF00701_consen 49 YSLTDEERKELLEIVV-EAAAGRVPVIAGVGANSTEEAI-ELARHAQDAGADAVLVIPPYYFKP--S------------Q 112 (289)
T ss_dssp GGS-HHHHHHHHHHHH-HHHTTSSEEEEEEESSSHHHHH-HHHHHHHHTT-SEEEEEESTSSSC--C------------H
T ss_pred ccCCHHHHHHHHHHHH-HHccCceEEEecCcchhHHHHH-HHHHHHhhcCceEEEEeccccccc--h------------h
Confidence 4577888888887754 3456899999999998887755 678888999999888888999753 2 2
Q ss_pred HHHHHHHHHHHhhCCcCccceee
Q 009610 445 AEVRAFFDVHEQEGSHPGGIHLE 467 (531)
Q Consensus 445 ~Ev~~ff~vh~~~Gs~~GGvHLE 467 (531)
+||..||+...+....|=-++--
T Consensus 113 ~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 113 EELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEB
T ss_pred hHHHHHHHHHHhhcCCCEEEEEC
Confidence 46667777776666555555443
No 70
>PF14658 EF-hand_9: EF-hand domain
Probab=28.45 E-value=57 Score=27.49 Aligned_cols=35 Identities=20% Similarity=0.570 Sum_probs=26.1
Q ss_pred HHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEE
Q 009610 349 VEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITI 390 (531)
Q Consensus 349 VeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTL 390 (531)
+.|||.+. |++-+-.+|..|+..|||++.-|+|-|
T Consensus 21 ~~~Lra~~-------~~~p~e~~Lq~l~~elDP~g~~~~v~~ 55 (66)
T PF14658_consen 21 ITYLRAVT-------GRSPEESELQDLINELDPEGRDGSVNF 55 (66)
T ss_pred HHHHHHHc-------CCCCcHHHHHHHHHHhCCCCCCceEeH
Confidence 35666554 235667899999999999999887753
No 71
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=27.82 E-value=2.7e+02 Score=24.77 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=25.3
Q ss_pred ChhHHHhhChHHHHHHHHCCCceEEEcCCCC
Q 009610 395 GAENMRVKLPHLIRAVRREGQIVTWVCDPMH 425 (531)
Q Consensus 395 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMH 425 (531)
..+.+.+.|-.+|+.+++.|.+|+|+.=|..
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~vil~~~~~~ 112 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPVLLVGMQAP 112 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3456888899999999999999999875443
No 72
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=27.46 E-value=1.3e+02 Score=32.82 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=20.4
Q ss_pred CCChhHHHHHHHHHHH-----------HHHHHHhhhc
Q 009610 220 VPDPERLIRAYCQSAA-----------TLNLLRSFAT 245 (531)
Q Consensus 220 ~PDP~Rll~aY~~Saa-----------TLn~lRa~~~ 245 (531)
.-||-|||+++..++. |+++++....
T Consensus 129 ~eDPlRiLRa~RFaarl~~lgf~i~~~T~~~i~~~~~ 165 (409)
T PRK10885 129 AEDPLRVLRVARFAARFAHLGFRIAPETLALMREMVA 165 (409)
T ss_pred hhCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhh
Confidence 5799999999988765 6777776554
No 73
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=27.45 E-value=1.5e+02 Score=32.71 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=37.1
Q ss_pred CCCChhHHHHHHHHHHH-----------HHHHHHhhhcC-CccccccccccchhhhccCchhhHHHHHHHHHH-----HH
Q 009610 219 RVPDPERLIRAYCQSAA-----------TLNLLRSFATG-GYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVD-----EA 281 (531)
Q Consensus 219 R~PDP~Rll~aY~~Saa-----------TLn~lRa~~~g-g~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~-----~a 281 (531)
=.-||-|||+|+..++. |+.+++..... -+..+ +..+-++|+..-+. .+
T Consensus 128 F~EDPLRiLRa~RFaar~~~lgF~i~~~T~~~i~~~~~~~~l~~~--------------s~ERI~~El~k~L~~~~p~~~ 193 (417)
T PRK13298 128 FIEDPLRVLRVARFAALLVHLGFKIAKETMILMCIMVKKHELLYL--------------TPERIWNETEKALKTDNPHVY 193 (417)
T ss_pred cccCHHHHHHHHHHHHHhccCCCccCHHHHHHHHHHhhhhhhhcC--------------CHHHHHHHHHHHHcCCCHHHH
Confidence 36799999999998874 88888866532 12222 22233444444332 35
Q ss_pred HhHHHHhcCCC
Q 009610 282 LGFMAAAGLTL 292 (531)
Q Consensus 282 l~Fm~a~G~~~ 292 (531)
+.+|..||+-.
T Consensus 194 ~~~L~~~g~L~ 204 (417)
T PRK13298 194 FQVLYECNALK 204 (417)
T ss_pred HHHHHHcCCHH
Confidence 77888887643
No 74
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=27.33 E-value=1e+02 Score=32.61 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=63.2
Q ss_pred ccccCCCCchhHHHhhhc--cCCceeeeCCCCCHHHHHHHHHHhCCCCC---CCcEEEEeccChhHHHhhChHHHHHHHH
Q 009610 338 GERTRQLDGAHVEFLRGI--ANPLGIKVSDKMDPNELVKLVEIFNPHNK---AGRITIICRMGAENMRVKLPHLIRAVRR 412 (531)
Q Consensus 338 GeRTRqlDgAHVeflrgI--~NPIGvKvGP~~~p~elv~L~~~LnP~~~---PGRLTLI~RmGa~~v~~~LP~LI~AV~~ 412 (531)
|-+.--+|-..|..++.. .=||=+ ||.-- ||=. =-...--++..|+|.+|--+
T Consensus 171 gy~~~~~D~~~ip~mk~~~t~lPVi~------------------DpSHsvq~p~~~----g~~s~G~re~v~~larAAvA 228 (281)
T PRK12457 171 GYDNLVVDMLGFRQMKRTTGDLPVIF------------------DVTHSLQCRDPL----GAASGGRRRQVLDLARAGMA 228 (281)
T ss_pred CCCCcccchHHHHHHHhhCCCCCEEE------------------eCCccccCCCCC----CCCCCCCHHHHHHHHHHHHH
Confidence 444556788888888886 557644 33331 2210 00013457889999999999
Q ss_pred CCCceEEE---cCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHh
Q 009610 413 EGQIVTWV---CDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQ 456 (531)
Q Consensus 413 aG~~ViW~---cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~ 456 (531)
.|..=+.+ +||=+.=. -.++=+.-..|+.++++++.+-++...
T Consensus 229 ~GaDGl~iEvHpdP~~Als-Dg~q~l~~~~~~~l~~~l~~i~~~~~~ 274 (281)
T PRK12457 229 VGLAGLFLEAHPDPDRARC-DGPSALPLDQLEPFLSQVKALDDLVKS 274 (281)
T ss_pred hCCCEEEEEecCCccccCC-CcccccCHHHHHHHHHHHHHHHHHHcc
Confidence 99987766 57765533 223457788899999999988777544
No 75
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=27.32 E-value=1.1e+02 Score=32.27 Aligned_cols=92 Identities=20% Similarity=0.266 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++.+..-+|-+-...+|.| .+++-..|--|+=.+=++.+ |.|. |..| +-.|.|-
T Consensus 146 eI~~ii~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlSp~~N~R~D~-----yGGs-----lenR~rf---- 204 (338)
T cd02933 146 EIPGIVADFRQAARNAIEAGFD-------GVEIHGANGYLIDQFLRDGSNKRTDE-----YGGS-----IENRARF---- 204 (338)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchhHHHhcCCccCCCCCc-----CCCc-----HHHhhhH----
Confidence 3445666666666666677775 45788888777766666654 3343 3322 2256664
Q ss_pred hHHHhhhccC-----CceeeeCCC---------CCHHHHHHHHHHhCCC
Q 009610 348 HVEFLRGIAN-----PLGIKVSDK---------MDPNELVKLVEIFNPH 382 (531)
Q Consensus 348 HVeflrgI~N-----PIGvKvGP~---------~~p~elv~L~~~LnP~ 382 (531)
-+|-++.|++ |||||+.+. .+.+|.+++++.|+-.
T Consensus 205 ~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~ 253 (338)
T cd02933 205 LLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKR 253 (338)
T ss_pred HHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHc
Confidence 3455555553 799999753 4678888888888544
No 76
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=27.28 E-value=54 Score=33.70 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=25.8
Q ss_pred HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCC
Q 009610 398 NMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAP 432 (531)
Q Consensus 398 ~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~ 432 (531)
.+.+.+=..+++..++|..+|+++||..+.+.-++
T Consensus 177 ~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp 211 (340)
T TIGR01463 177 LALDFVIAYAKAMVEAGADVIAIADPFASSDLISP 211 (340)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecCCccCccccCH
Confidence 34455566777777899999999999976555554
No 77
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=27.16 E-value=1.7e+02 Score=27.56 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCC
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLD 293 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~ 293 (531)
.-..++.+|-++|.|++..|+...
T Consensus 107 ~~~~~~~~i~~~l~~LH~~~i~H~ 130 (267)
T cd08229 107 TVWKYFVQLCSALEHMHSRRVMHR 130 (267)
T ss_pred HHHHHHHHHHHHHHHHHHCCeecC
Confidence 345678899999999999887543
No 78
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=27.13 E-value=71 Score=31.95 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=27.0
Q ss_pred HHHhhhccC---CceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEe
Q 009610 349 VEFLRGIAN---PLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIIC 392 (531)
Q Consensus 349 VeflrgI~N---PIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~ 392 (531)
.++++.|++ ||.||+.+..+ ++.+++++.|.-...-+ |++.+
T Consensus 129 ~eiv~avr~~~~pVsvKir~g~~-~~~~~la~~l~~aG~d~-ihv~~ 173 (233)
T cd02911 129 SEFIKALKETGVPVSVKIRAGVD-VDDEELARLIEKAGADI-IHVDA 173 (233)
T ss_pred HHHHHHHHhcCCCEEEEEcCCcC-cCHHHHHHHHHHhCCCE-EEECc
Confidence 455665555 99999998887 67777777775433332 44433
No 79
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=26.51 E-value=2.1e+02 Score=29.33 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHH
Q 009610 371 ELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAF 450 (531)
Q Consensus 371 elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~f 450 (531)
-+-+|++.|+-.+.++=.-++. .+.+.-|.+|+++.++||.|. .||-+-..- ..=.-+++.+||...
T Consensus 29 nt~riL~lL~~~gikATFFv~g-----~~~e~~p~lir~i~~~GhEIg-----sHg~sH~~l---~~ls~ee~~~eI~~s 95 (265)
T TIGR03006 29 NTDRILDLLDRHGVKATFFTLG-----WVAERYPELVRRIVAAGHELA-----SHGYGHERV---TTQTPEAFRADIRRS 95 (265)
T ss_pred hHHHHHHHHHHcCCcEEEEEec-----cchhhCHHHHHHHHHcCCEee-----eccccCcCc---hhCCHHHHHHHHHHH
Confidence 3566777887777876555543 456778999999999999875 577554332 233457889999999
Q ss_pred HHHHHhh
Q 009610 451 FDVHEQE 457 (531)
Q Consensus 451 f~vh~~~ 457 (531)
.++.++.
T Consensus 96 ~~~Le~i 102 (265)
T TIGR03006 96 KALLEDL 102 (265)
T ss_pred HHHHHHH
Confidence 9999874
No 80
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=25.91 E-value=70 Score=36.06 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHh-------CCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCC-cccCCCCccc
Q 009610 366 KMDPNELVKLVEIF-------NPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGN-TIKAPCGLKT 437 (531)
Q Consensus 366 ~~~p~elv~L~~~L-------nP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGN-T~~~~~G~KT 437 (531)
.+|++|+..|.+.+ +.+. +.+.=+.=.|-+.-...-+.++--|.+.|.+| ||||| .+++.+|
T Consensus 132 G~t~~Ei~~lt~AM~~sg~~l~~~~--~~~vDkhgTGGd~gnk~ni~~apIvAA~Gv~V-----aKhsnRaits~sG--- 201 (493)
T TIGR02645 132 GMTMDEIEALTIAMADTGEMLEWDR--EPIMDKHSIGGVPGNKTSLIVVPIVAAAGLLI-----PKTSSRAITSAAG--- 201 (493)
T ss_pred CCCHHHHHHHHHHHHHhCCCccCCC--CCeEEEeCCCCCCCCCEeHHHHHHHHhCCCCe-----eeeCCCCcCCCcc---
Confidence 48999999888753 3322 33444444444421222234666678999998 89999 4555544
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcccc
Q 009610 438 RPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTEC 476 (531)
Q Consensus 438 R~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTEC 476 (531)
..|+.++. | .+|++.+++-+|
T Consensus 202 ------------TAD~LE~L-----g-~v~ls~e~~~~~ 222 (493)
T TIGR02645 202 ------------TADTMEVL-----T-RVALSAEEIKRI 222 (493)
T ss_pred ------------HHHHHHHh-----c-CCCCCHHHHHHH
Confidence 55666666 3 788888876665
No 81
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=25.71 E-value=1.2e+02 Score=28.37 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceE
Q 009610 364 SDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVT 418 (531)
Q Consensus 364 GP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~Vi 418 (531)
|..++.+++++.++.+.|. .+ -|+=.|-+-..+.|-.|++.+++.|.++.
T Consensus 43 g~~lt~eel~~~I~~~~~~-~~----gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~ 92 (147)
T TIGR02826 43 GTKLTPEYLTKTLDKYRSL-IS----CVLFLGGEWNREALLSLLKIFKEKGLKTC 92 (147)
T ss_pred CcCCCHHHHHHHHHHhCCC-CC----EEEEechhcCHHHHHHHHHHHHHCCCCEE
Confidence 6679999999999998744 23 34445777344568899999999998763
No 82
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=25.71 E-value=1.4e+02 Score=29.89 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCCCC-CcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcC--CCCCCc
Q 009610 369 PNELVKLVEIFNPHNKA-GRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCD--PMHGNT 428 (531)
Q Consensus 369 p~elv~L~~~LnP~~~P-GRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cD--PMHGNT 428 (531)
-+++.+|.+.|-|-..+ .+|-+-+=.| +.+.+.|=.+-+.++.-+.+.+|+.| ||=|.-
T Consensus 20 ~~~F~~lw~~l~~~~~~Lk~lAiSc~~~-~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDI 81 (183)
T PF12617_consen 20 LAAFERLWQALAPSVPQLKLLAISCPDG-EGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDI 81 (183)
T ss_pred cHHHHHHHHHHHhhhhhccEEEEECCCC-HHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCC
Confidence 46788888999998888 4555544555 55668899999999999999999999 999974
No 83
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=25.36 E-value=96 Score=34.50 Aligned_cols=63 Identities=22% Similarity=0.124 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHh-------CCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc-ccCCCC
Q 009610 366 KMDPNELVKLVEIF-------NPHN--KAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNT-IKAPCG 434 (531)
Q Consensus 366 ~~~p~elv~L~~~L-------nP~~--~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT-~~~~~G 434 (531)
.+|++|+..+.+.+ +... ..+.+.=+.=.|-+.- ..-+.++-.|.+.|.+| |||||- +++.+|
T Consensus 50 G~t~eEi~~lt~Am~~sg~~i~~~~~d~~~~~vDkhgTGGdG~-niS~~~a~ivAa~Gv~V-----aKhg~R~lss~~G 122 (440)
T PRK05820 50 GMTRPERVALTLAMRDSGEVLDWSSLNLNGPIVDKHSTGGVGD-KISLMLAPMVAACGGYV-----PMISGRGLGHTGG 122 (440)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCccccCCCCeEEEcCCCCCCc-cHHHHHHHHHHhCCCCE-----EeeCCCCCCCccc
Confidence 68899999988863 2111 0233333333332211 34566677788999999 799995 555556
No 84
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=25.00 E-value=1.6e+02 Score=32.44 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCChhHHHHHHHHHHH--------HHHHHHhhhcCCccccccccccchhhhccCchhhHHHHHHHHH-----HHHHhHHH
Q 009610 220 VPDPERLIRAYCQSAA--------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRV-----DEALGFMA 286 (531)
Q Consensus 220 ~PDP~Rll~aY~~Saa--------TLn~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i-----~~al~Fm~ 286 (531)
.-||-|||+|...|+. |.+.|+.+... +...+..+-|+|+.+-+ ..++.+|.
T Consensus 165 ~EDPlRiLRAvRFaa~LgF~Ie~~T~~~I~~~a~~---------------L~~vs~eRI~~El~Kll~~~~~~~~l~~L~ 229 (410)
T TIGR01942 165 QEDPVRMLRALRFSVKLEFTIDESTARPIRESAPL---------------LKGIPPARLFEEILKLLFSGRSAALFRMLC 229 (410)
T ss_pred cccHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5699999999999986 88888865421 22233334455555433 36778888
Q ss_pred HhcCCC
Q 009610 287 AAGLTL 292 (531)
Q Consensus 287 a~G~~~ 292 (531)
.+|+-.
T Consensus 230 ~~gll~ 235 (410)
T TIGR01942 230 GYQLLE 235 (410)
T ss_pred HcCCHH
Confidence 888754
No 85
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=24.31 E-value=1.2e+02 Score=31.49 Aligned_cols=95 Identities=24% Similarity=0.337 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++.+..-+|-+....+|.| .+++-..|--|+=.|=.+.+ |.|...|. +-.|.|.+ -.
T Consensus 148 eI~~ii~~~~~aA~~a~~aGfD-------gVei~~~~gyLl~qFlsp~~N~R~D~yGgs----------l~nr~rf~-~e 209 (336)
T cd02932 148 EIAEVVDAFVAAARRAVEAGFD-------VIEIHAAHGYLLHQFLSPLSNKRTDEYGGS----------LENRMRFL-LE 209 (336)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccccHHHHhcCCccCCCCcccCCC----------HHHHhHHH-HH
Confidence 3455666666666666777775 35777777666655555543 44443332 23576654 22
Q ss_pred hHHHhhhc---cCCceeeeCC------CCCHHHHHHHHHHhCCC
Q 009610 348 HVEFLRGI---ANPLGIKVSD------KMDPNELVKLVEIFNPH 382 (531)
Q Consensus 348 HVeflrgI---~NPIGvKvGP------~~~p~elv~L~~~LnP~ 382 (531)
.|+=+|.. .-||+||++| ..+++|.+++++.|...
T Consensus 210 iv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~ 253 (336)
T cd02932 210 VVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKEL 253 (336)
T ss_pred HHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHc
Confidence 33333322 2389999985 46788888888888643
No 86
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=24.28 E-value=1.4e+02 Score=31.29 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=31.8
Q ss_pred hHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHH
Q 009610 404 PHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVH 454 (531)
Q Consensus 404 P~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh 454 (531)
|.+++.+++.|.+||=+ +|+|+..+.. +.-.++|++.||..||+--
T Consensus 123 ~~~~~~~a~~~~~vVlm--h~~g~p~~~~---~~~~y~dv~~~v~~~l~~~ 168 (282)
T PRK11613 123 PGALEAAAETGLPVCLM--HMQGNPKTMQ---EAPKYDDVFAEVNRYFIEQ 168 (282)
T ss_pred HHHHHHHHHcCCCEEEE--cCCCCCCccc---cCCCcccHHHHHHHHHHHH
Confidence 56677788899999988 6788643321 1123578999998777643
No 87
>KOG3943 consensus THUMP domain-containing proteins [General function prediction only]
Probab=23.10 E-value=60 Score=33.93 Aligned_cols=128 Identities=19% Similarity=0.241 Sum_probs=76.3
Q ss_pred CCCCchhHHH-hhhccCCceeeeCCCCCHHHHHHHH--HHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCce-
Q 009610 342 RQLDGAHVEF-LRGIANPLGIKVSDKMDPNELVKLV--EIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIV- 417 (531)
Q Consensus 342 RqlDgAHVef-lrgI~NPIGvKvGP~~~p~elv~L~--~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~V- 417 (531)
||+ ++-|+. .+-|.-|-++|. .-|++++.+| +..+|.+..-|-.+|-||=- |.--+-.-++....---.|
T Consensus 117 ~~P-~~Fv~~~~~Cv~f~~t~Kn---iVpe~~v~~i~~dm~elk~k~kRtR~~Qr~~P--i~~tc~a~le~m~k~a~~VI 190 (291)
T KOG3943|consen 117 LRP-FQFVESGANCVVFIRTLKN---IVPEKLVHHILQDMYELKTKKKRTRVIQRMLP--ISGTCKAFLEDMKKYAETVI 190 (291)
T ss_pred cCc-hhhhhccCceEEeecccCc---cCchHHHHHHHHHHHhhhccchhhhhhhhhcc--ccchHHhhHHHHHHHHHHhh
Confidence 444 554442 123444555565 5688888776 45789988888888888741 2211222222222222223
Q ss_pred -EEEcCCCCCCcccCCCCccccchhHHHHH--HHHHHHHHHhhCCcCccceeeecCCCcc---cccC
Q 009610 418 -TWVCDPMHGNTIKAPCGLKTRPFDAILAE--VRAFFDVHEQEGSHPGGIHLEMTGQNVT---ECIG 478 (531)
Q Consensus 418 -iW~cDPMHGNT~~~~~G~KTR~f~~Il~E--v~~ff~vh~~~Gs~~GGvHLE~Tg~~VT---ECvG 478 (531)
=|.=||=-|--.+=+=-+|.|+|+.|-+| |+.--++.-.+|+-. -+-++-.||| ||.-
T Consensus 191 ~p~fkap~tgK~~tf~VE~k~RNn~~v~r~~vi~~V~~~Vc~l~se~---~VdL~n~D~t~~Ve~~k 254 (291)
T KOG3943|consen 191 EPWFKAPNTGKKGTFQVEYKSRNNSHVNREEVIREVAGIVCTLNSEN---KVDLTNPDYTVVVEIIK 254 (291)
T ss_pred cccccCCCCCcCceEEEEEEeccccchhHHHHHHHHHHHHHhcCccc---eeeccCCCeEEEEEeee
Confidence 38888866642222336999999987654 566667777777776 7788888876 6643
No 88
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=22.98 E-value=1.1e+02 Score=33.07 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=7.9
Q ss_pred CCCceEEEcCCCCCCc
Q 009610 413 EGQIVTWVCDPMHGNT 428 (531)
Q Consensus 413 aG~~ViW~cDPMHGNT 428 (531)
++.+| ++|||||-+
T Consensus 175 ~~lkV--vvD~~~G~~ 188 (448)
T PRK14315 175 DGLRV--VVDCANGAA 188 (448)
T ss_pred CCCEE--EEECCCchH
Confidence 44454 357777754
No 89
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.92 E-value=1.9e+02 Score=28.00 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=40.2
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEe-ccChhHHHhhChHHHHHHHHCCCc---eEEEc
Q 009610 361 IKVSDKMDPNELVKLVEIFNPHNKAGRITIIC-RMGAENMRVKLPHLIRAVRREGQI---VTWVC 421 (531)
Q Consensus 361 vKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~-RmGa~~v~~~LP~LI~AV~~aG~~---ViW~c 421 (531)
|=+|+..+++++++.++..+|+- ..|+ .|.. .+ ..+..+|+++++.|.+ .||+.
T Consensus 116 i~LG~~vp~e~~v~~~~~~~pd~-----v~lS~~~~~-~~-~~~~~~i~~l~~~~~~~~v~i~vG 173 (197)
T TIGR02370 116 IDLGRDVPIDTVVEKVKKEKPLM-----LTGSALMTT-TM-YGQKDINDKLKEEGYRDSVKFMVG 173 (197)
T ss_pred EECCCCCCHHHHHHHHHHcCCCE-----EEEcccccc-CH-HHHHHHHHHHHHcCCCCCCEEEEE
Confidence 33799999999999999999963 4444 3333 33 3468999999999864 56665
No 90
>PRK08136 glycosyl transferase family protein; Provisional
Probab=22.88 E-value=66 Score=34.03 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHhCCCC----CCC---cEEEEeccChhHH-HhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcccc
Q 009610 367 MDPNELVKLVEIFNPHN----KAG---RITIICRMGAENM-RVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTR 438 (531)
Q Consensus 367 ~~p~elv~L~~~LnP~~----~PG---RLTLI~RmGa~~v-~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR 438 (531)
-|+|||.-.++.+.-.- .|. .+.-|+=.|-++- -...+..---+.++|.+|+ +|||--.++ |
T Consensus 54 ET~eElaG~~~a~~~~~~~~~~~~~~~~~iD~~gtgGd~~t~nist~aA~vlA~~G~~V~-----kHGnr~vss---k-- 123 (317)
T PRK08136 54 ESEAEMLGFLDAMQAHTIPLTPPAGRPMPVVIPSYNGARKQANLTPLLALLLAREGVPVL-----VHGVSEDPT---R-- 123 (317)
T ss_pred CCHHHHHHHHHHHHHhCCcCCCCCCCCceEEeCCCCCCCCCcChHHHHHHHHHHCCCeEE-----EECCCCCCC---c--
Confidence 46888888877554221 221 2455555555521 1112223334577899997 899965442 1
Q ss_pred chhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcccccC
Q 009610 439 PFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIG 478 (531)
Q Consensus 439 ~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTECvG 478 (531)
.+--||.++. |+-++++++++.+|+.
T Consensus 124 ---------~gsadvleaL-----Gi~~~~~~~~~~~~l~ 149 (317)
T PRK08136 124 ---------VTSAEIFEAL-----GIPPTLHADQAQAKLA 149 (317)
T ss_pred ---------ccHHHHHHHc-----CCCCCCCHHHHHHHHH
Confidence 1223344444 7889999999999964
No 91
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=22.85 E-value=1.7e+02 Score=27.21 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=39.2
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHH----hhChHHHHHHHHC-CCceEEE
Q 009610 363 VSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMR----VKLPHLIRAVRRE-GQIVTWV 420 (531)
Q Consensus 363 vGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~----~~LP~LI~AV~~a-G~~ViW~ 420 (531)
-|-.++++++.++++.|......+-||| .|-+=.. +.|-.+++.+++. |.+.+|+
T Consensus 42 ~g~~~~~~~~~~i~~~l~~~~~~~gVt~---sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~ 101 (154)
T TIGR02491 42 GGKEFTEALEKEIIRDLNDNPLIDGLTL---SGGDPLYPRNVEELIELVKKIKAEFPEKDIWL 101 (154)
T ss_pred CCCcCCHHHHHHHHHHHHhcCCcCeEEE---eChhhCCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 4778998888888888876643455776 5666554 4577888888876 5666776
No 92
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=22.82 E-value=1e+02 Score=33.82 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=34.5
Q ss_pred CCChhHHHHHHHHHHH--------HHHHHHhhhcCCccccccccccchhhhccCchhhHHHHHHHHH-----HHHHhHHH
Q 009610 220 VPDPERLIRAYCQSAA--------TLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRV-----DEALGFMA 286 (531)
Q Consensus 220 ~PDP~Rll~aY~~Saa--------TLn~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i-----~~al~Fm~ 286 (531)
.-||-|||+|+..++. |++.|+.... .+..+ +..+-++++..-+ ..++++|.
T Consensus 167 ~eDPlRiLRa~Rfaa~lgf~i~~~T~~~i~~~~~------------~l~~i---~~eRi~~E~~kil~~~~~~~~l~~l~ 231 (466)
T TIGR02692 167 GDDPLRMLRAARFVSQLGFEVAPRVRAAMTEMAD------------QIERI---SAERVRVELDKLLLGDHPRAGIDLMV 231 (466)
T ss_pred hhChHHHHHHHHHHHHhCCCcCHHHHHHHHHHHH------------HHhcC---CHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4589999999998764 5666664331 11111 1212233333322 35788888
Q ss_pred HhcCCCC
Q 009610 287 AAGLTLD 293 (531)
Q Consensus 287 a~G~~~~ 293 (531)
.+|+-..
T Consensus 232 ~~glL~~ 238 (466)
T TIGR02692 232 ETGLADR 238 (466)
T ss_pred hhhhhhh
Confidence 8887654
No 93
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=22.73 E-value=1e+02 Score=33.18 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=44.5
Q ss_pred hhHHHhhhccC--CceeeeCCCCCHHHHHHHHHHhCCCC-----C-C----CcEEEEeccChhHHHhhChHHHHHHHHCC
Q 009610 347 AHVEFLRGIAN--PLGIKVSDKMDPNELVKLVEIFNPHN-----K-A----GRITIICRMGAENMRVKLPHLIRAVRREG 414 (531)
Q Consensus 347 AHVeflrgI~N--PIGvKvGP~~~p~elv~L~~~LnP~~-----~-P----GRLTLI~RmGa~~v~~~LP~LI~AV~~aG 414 (531)
..|+.+|...+ ||+||+++..+++++.++++.-.++- - . +.+.++...|--.+ ..||.+.+++.+.|
T Consensus 203 ~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~-~~L~~v~~~~~~~~ 281 (392)
T cd02808 203 QLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTE-LGLARAHQALVKNG 281 (392)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHH-HHHHHHHHHHHHcC
Confidence 46788888877 99999999989999999998875542 1 1 11222223333233 56677777777665
No 94
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.54 E-value=3e+02 Score=27.07 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=45.6
Q ss_pred cChhHHHhhChHHHHHHHHCC--CceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCcccee----e
Q 009610 394 MGAENMRVKLPHLIRAVRREG--QIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHL----E 467 (531)
Q Consensus 394 mGa~~v~~~LP~LI~AV~~aG--~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHL----E 467 (531)
|..+.+++++..+|+.+++.- .|++-+....+.+..... ..+. .+.+....++..|+-.++.|-. .||+ |
T Consensus 71 ~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~-~~~~-~~~~~~~~~r~~v~~l~~~g~~--nl~~l~g~~ 146 (178)
T PF14606_consen 71 MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDN-SRGE-TVEEFREALREAVEQLRKEGDK--NLYYLDGEE 146 (178)
T ss_dssp CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS---TTS---HHHHHHHHHHHHHHHHHTT-T--TEEEE-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCc-hHHH-HHHHHHHHHHHHHHHHHHcCCC--cEEEeCchh
Confidence 778889999999999999875 688888888888874332 2222 4677777788888888776643 4665 4
Q ss_pred ecCCCcccccCCCCCCCccccc
Q 009610 468 MTGQNVTECIGGSRTVTFDDLS 489 (531)
Q Consensus 468 ~Tg~~VTECvGG~~~~~e~dL~ 489 (531)
+-|++ .||.- +++...||+
T Consensus 147 llg~d-~e~tv--DgvHP~DlG 165 (178)
T PF14606_consen 147 LLGDD-HEATV--DGVHPNDLG 165 (178)
T ss_dssp CS--------------------
T ss_pred hcCcc-ccccc--ccccccccc
Confidence 45555 45532 335666665
No 95
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=22.46 E-value=1.9e+02 Score=23.14 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=41.0
Q ss_pred hcCCeeEEecCCccchhhhcChhhHHHHHHHHHHHHHHHhhcCCCCeEee----eccccC
Q 009610 129 AMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKV----GRMAGQ 184 (531)
Q Consensus 129 a~G~AFlLQgGDCAEsF~e~~~~~i~~k~~~LlqMa~vL~~g~~~PVVkV----GRiAGQ 184 (531)
+.|...++- =...++|.+++++.+.+-++++.++...|....+.+-+.+ |-.+||
T Consensus 17 ~~gh~lIip-k~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~ 75 (86)
T cd00468 17 APGHVLVCP-KRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQ 75 (86)
T ss_pred CCCcEEEeC-chhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCC
Confidence 446666665 6678899999999999999999999999865555444443 556666
No 96
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=21.68 E-value=54 Score=36.75 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=28.8
Q ss_pred hhhhcChhhHH-HHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCc
Q 009610 144 SFKEFNANNIR-DTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDN 208 (531)
Q Consensus 144 sF~e~~~~~i~-~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~ 208 (531)
....++++.|| .|+++|..|-.+=......-| +=|||.+= .++|..+|.||-+-
T Consensus 259 ~P~~~~~~~ir~eK~kvL~sir~~~~~~~~~~~-----VrGQY~~g------~~~g~~~~gY~~e~ 313 (495)
T PRK05722 259 PPASLDADSIRDEKVKVLRALRPITPEDVKENT-----VRGQYTAG------WIGGKPVPGYREEE 313 (495)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhhhhcce-----eeccccCC------CCCCCCCCCccCCC
Confidence 34445555554 366666544321111111113 35999642 35899999999753
No 97
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=21.42 E-value=1e+02 Score=29.60 Aligned_cols=108 Identities=23% Similarity=0.411 Sum_probs=67.2
Q ss_pred CccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHH--HHHHHHHHHHhcCCeeEEecCCccchhhhcChhhHHHHHHH--H
Q 009610 85 KKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEA--RSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRV--L 160 (531)
Q Consensus 85 ~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei--~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~~k~~~--L 160 (531)
...-|....+|.+ ++...|+...|+|+.+|+ ..+++.|.. +|+ +-|+. ..|.+.|.+++.+ +
T Consensus 28 ~ki~~~V~v~~tp---~~~GML~kV~~~V~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~~i 93 (154)
T PRK06049 28 HRVNHCVLVPETP---SYKGMLQKVKDYVTWGEIDADTLAELLRK--RGR---LEGNK------KLTDEYVKENTGYDSI 93 (154)
T ss_pred CcCCCEEEEeCCH---HHHHHHHhhhceeEEeeCchHHHHHHHHH--hCc---ccCCC------CCCHHHHHHhcCCccH
Confidence 3344666666664 455667777899999984 456666665 454 33432 4555666665555 6
Q ss_pred HHHHHHHhhcC--------CCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCC
Q 009610 161 LQMGVVLMFGG--------QMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNIN 210 (531)
Q Consensus 161 lqMa~vL~~g~--------~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN 210 (531)
..|+..|..+. =+|+.|.-=--|-|.+ ...+| .+|-.+- ||||.||
T Consensus 94 edl~~~i~~~~~~fk~~~~~~~~FrL~pPr~G~~~-~k~~~--~~gG~~G-~r~~~In 147 (154)
T PRK06049 94 EELAEALVEGEIKLKDLPGLKPVFRLHPPRGGFGG-IKRPF--KEGGELG-YRGEKIN 147 (154)
T ss_pred HHHHHHHHhCCCCHHHhhcccCceecCCcchhhhh-ccccc--ccCCCCC-ccHHHHH
Confidence 66776665443 4567777666677843 33444 3455565 9999999
No 98
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=21.00 E-value=1.2e+02 Score=29.44 Aligned_cols=31 Identities=13% Similarity=0.380 Sum_probs=23.4
Q ss_pred hhHHHhhhc-cCCceeee--CCCCCHHHHHHHHHH
Q 009610 347 AHVEFLRGI-ANPLGIKV--SDKMDPNELVKLVEI 378 (531)
Q Consensus 347 AHVeflrgI-~NPIGvKv--GP~~~p~elv~L~~~ 378 (531)
.+|+.|+.+ +.|++||+ |+. |.++++++++.
T Consensus 162 ~~v~~~~~~~~~~v~ik~aGGik-t~~~~l~~~~~ 195 (203)
T cd00959 162 EDVKLMKEAVGGRVGVKAAGGIR-TLEDALAMIEA 195 (203)
T ss_pred HHHHHHHHHhCCCceEEEeCCCC-CHHHHHHHHHh
Confidence 566666555 56999999 466 78999998876
No 99
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=20.91 E-value=38 Score=32.15 Aligned_cols=41 Identities=34% Similarity=0.694 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccccc
Q 009610 268 GDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRR 320 (531)
Q Consensus 268 ~~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~ 320 (531)
.+.|..+..+||++|.||.. ||..... |.-++-|.+.|||-
T Consensus 94 ~~~F~~~L~~LD~cl~Fl~~------h~~fkea------~~Y~~rf~q~ltRA 134 (157)
T PF04136_consen 94 SDSFKPMLSRLDECLEFLEE------HPNFKEA------EVYLIRFRQCLTRA 134 (157)
T ss_pred chHHHHHHHHHHHHHHHHHH------hhhhhhh------HHHHHHHHHHHHHH
Confidence 35689999999999999997 4444444 55567899999984
No 100
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=20.49 E-value=1.3e+02 Score=32.32 Aligned_cols=59 Identities=31% Similarity=0.463 Sum_probs=42.5
Q ss_pred cEEEEeccCh-----hHHHhhChHHHH-HHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCC
Q 009610 387 RITIICRMGA-----ENMRVKLPHLIR-AVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGS 459 (531)
Q Consensus 387 RLTLI~RmGa-----~~v~~~LP~LI~-AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs 459 (531)
==+.|+||+. +--.+.+|..|+ |-+.... |.|| +|++||.+-.+-+=+++|-.|... |+
T Consensus 177 lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~-------~i~g------~g~~~rs~l~veD~~ea~~~v~~K-g~ 241 (331)
T KOG0747|consen 177 LPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEY-------PIHG------DGLQTRSYLYVEDVSEAFKAVLEK-GE 241 (331)
T ss_pred CcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCc-------ceec------CcccceeeEeHHHHHHHHHHHHhc-CC
Confidence 3489999973 222467888888 4442222 5688 899999999888888888888777 66
No 101
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=20.34 E-value=72 Score=26.65 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=13.9
Q ss_pred CCceEEEcCCCCCCcccCC
Q 009610 414 GQIVTWVCDPMHGNTIKAP 432 (531)
Q Consensus 414 G~~ViW~cDPMHGNT~~~~ 432 (531)
..||+-.| |+|||...++
T Consensus 28 ~~PvtI~C-P~HG~~~~s~ 45 (60)
T PF05265_consen 28 ATPVTIRC-PKHGNFTCST 45 (60)
T ss_pred CCceEEEC-CCCCcEEecc
Confidence 45788888 9999987664
No 102
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=20.20 E-value=2.3e+02 Score=30.63 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=43.8
Q ss_pred hccCCceeeeCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccChhHHHhhChHHHHHHHH--CCCceEEEcCCCCCC
Q 009610 354 GIANPLGIKVSDKMDPNELVKLVEIF--NPHNKAGRITIICRMGAENMRVKLPHLIRAVRR--EGQIVTWVCDPMHGN 427 (531)
Q Consensus 354 gI~NPIGvKvGP~~~p~elv~L~~~L--nP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~--aG~~ViW~cDPMHGN 427 (531)
..+||+=+ |...+++.+.+.+++| ||+ .-+=|..|. -|..+.....-.++++.++ .+.|| ++| |-|+
T Consensus 282 ~paNPlDl--gg~a~~e~~~~aL~~ll~Dp~-VdaVlv~i~-ggi~~~~~vA~~Ii~a~~~~~~~kPv-vv~--l~G~ 352 (392)
T PRK14046 282 EPANFLDV--GGGASPERVAKAFRLVLSDRN-VKAILVNIF-AGINRCDWVAEGVVQAAREVGIDVPL-VVR--LAGT 352 (392)
T ss_pred CCcCCEEe--cCCCCHHHHHHHHHHHHcCCC-CCEEEEEcC-CCCCCHHHHHHHHHHHHHhcCCCCcE-EEE--cCCC
Confidence 46899999 5559999999999987 453 444444444 2222223445788888887 56666 665 4563
No 103
>PLN02210 UDP-glucosyl transferase
Probab=20.18 E-value=1.7e+02 Score=32.11 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=49.9
Q ss_pred CCCCchhHHHhhhccCCceeeeCCCCCH----H-H--------------HHHHHHHhCCCCCCCcEEEEeccChhH--HH
Q 009610 342 RQLDGAHVEFLRGIANPLGIKVSDKMDP----N-E--------------LVKLVEIFNPHNKAGRITIICRMGAEN--MR 400 (531)
Q Consensus 342 RqlDgAHVeflrgI~NPIGvKvGP~~~p----~-e--------------lv~L~~~LnP~~~PGRLTLI~RmGa~~--v~ 400 (531)
.+|++..+++++.. .| -.=|||...+ + + =.+.++-| +..|.+=++..=||.-. =.
T Consensus 209 ~eLE~~~~~~l~~~-~~-v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl--d~~~~~svvyvsfGS~~~~~~ 284 (456)
T PLN02210 209 YELESEIIESMADL-KP-VIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWL--DKQARSSVVYISFGSMLESLE 284 (456)
T ss_pred HHHhHHHHHHHhhc-CC-EEEEcccCchhhcCcccccccccccccccccchHHHHHH--hCCCCCceEEEEecccccCCH
Confidence 47888888888764 23 3668888531 1 0 01234556 34444545555677532 23
Q ss_pred hhChHHHHHHHHCCCceEEEcCC
Q 009610 401 VKLPHLIRAVRREGQIVTWVCDP 423 (531)
Q Consensus 401 ~~LP~LI~AV~~aG~~ViW~cDP 423 (531)
+.+-.+..+..++|++++|++.|
T Consensus 285 ~~~~e~a~~l~~~~~~flw~~~~ 307 (456)
T PLN02210 285 NQVETIAKALKNRGVPFLWVIRP 307 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeC
Confidence 55778899999999999999875
No 104
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=20.08 E-value=2.1e+02 Score=31.17 Aligned_cols=59 Identities=25% Similarity=0.341 Sum_probs=37.6
Q ss_pred CCChhHHHHHHHHHHH---------HHHHHHhhhc-CCccccccccccchhhhccCchhhHHHHHHHHHH-----HHHhH
Q 009610 220 VPDPERLIRAYCQSAA---------TLNLLRSFAT-GGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVD-----EALGF 284 (531)
Q Consensus 220 ~PDP~Rll~aY~~Saa---------TLn~lRa~~~-gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~-----~al~F 284 (531)
.-||-|||+|+..++. |+.+++.+.. |.+..+ +..+-++|+..-+. .++..
T Consensus 140 ~EDPLRILRa~RFaarlg~F~i~~eT~~~~~~~~~~~~l~~l--------------~~ERI~~El~k~L~~~~p~~~l~~ 205 (364)
T PRK13297 140 AEDPVRILRLGRFAARFGDFSIAPETMQLCRRMVEAGEADAL--------------VPERVWKEVSRGLMAQAPSRMLDV 205 (364)
T ss_pred ccCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccccC--------------CHHHHHHHHHHHHcCCCHHHHHHH
Confidence 5699999999988763 6677776553 222222 22233555555443 47889
Q ss_pred HHHhcCCC
Q 009610 285 MAAAGLTL 292 (531)
Q Consensus 285 m~a~G~~~ 292 (531)
|..||+-.
T Consensus 206 L~~~g~L~ 213 (364)
T PRK13297 206 LARAGALA 213 (364)
T ss_pred HHHcCCHH
Confidence 99998765
No 105
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=20.04 E-value=1.6e+02 Score=28.22 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHHHhcCCCC
Q 009610 271 YQELAHRVDEALGFMAAAGLTLD 293 (531)
Q Consensus 271 y~~l~~~i~~al~Fm~a~G~~~~ 293 (531)
-..++.+|-.+|.|++..|+-..
T Consensus 97 ~~~~~~qi~~~l~~lH~~~i~H~ 119 (279)
T cd06619 97 LGRIAVAVVKGLTYLWSLKILHR 119 (279)
T ss_pred HHHHHHHHHHHHHHHHHCCEeeC
Confidence 34678899999999999987543
Done!