Query 009610
Match_columns 531
No_of_seqs 135 out of 453
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzi_A Probable 3-deoxy-D-arab 100.0 2E-208 7E-213 1601.4 38.6 434 79-518 26-462 (462)
2 1n8f_A DAHP synthetase; (beta/ 98.0 0.00046 1.6E-08 71.2 21.4 171 331-520 156-349 (350)
3 3tqk_A Phospho-2-dehydro-3-deo 97.9 0.0021 7.3E-08 66.2 23.6 176 327-520 149-345 (346)
4 1of8_A Phospho-2-dehydro-3-deo 97.7 0.0019 6.4E-08 67.2 19.6 169 334-520 174-365 (370)
5 3nvt_A 3-deoxy-D-arabino-heptu 88.5 0.4 1.4E-05 49.8 4.9 89 332-426 226-321 (385)
6 2nwr_A 2-dehydro-3-deoxyphosph 82.7 0.52 1.8E-05 46.7 2.3 87 332-427 95-187 (267)
7 1zco_A 2-dehydro-3-deoxyphosph 79.9 4.3 0.00015 39.8 7.7 92 332-429 107-205 (262)
8 3sz8_A 2-dehydro-3-deoxyphosph 79.7 1.4 4.7E-05 44.3 4.2 89 332-426 111-205 (285)
9 1vs1_A 3-deoxy-7-phosphoheptul 70.9 4.9 0.00017 39.9 5.5 93 332-428 122-219 (276)
10 1o60_A 2-dehydro-3-deoxyphosph 68.0 3.8 0.00013 41.0 3.9 98 332-435 109-212 (292)
11 3pzs_A PM kinase, pyridoxamine 61.6 5.4 0.00019 38.4 3.6 66 363-428 53-120 (289)
12 3r88_A Anthranilate phosphorib 59.6 5.4 0.00019 41.2 3.4 87 366-477 72-168 (377)
13 3zs7_A Pyridoxal kinase; trans 55.4 5.6 0.00019 39.0 2.5 65 364-428 53-123 (300)
14 2qkf_A 3-deoxy-D-manno-octulos 53.3 10 0.00034 37.6 3.9 100 332-437 106-211 (280)
15 3fs2_A 2-dehydro-3-deoxyphosph 53.1 10 0.00035 38.4 4.0 89 332-426 132-224 (298)
16 3hgj_A Chromate reductase; TIM 52.5 8.6 0.00029 38.7 3.4 92 270-382 146-251 (349)
17 1vr6_A Phospho-2-dehydro-3-deo 52.0 18 0.0006 37.3 5.6 92 332-428 190-287 (350)
18 3kru_A NADH:flavin oxidoreduct 48.0 20 0.00067 36.3 5.2 99 270-391 137-249 (343)
19 3rxz_A Polysaccharide deacetyl 45.1 60 0.0021 31.3 8.0 83 364-462 59-142 (300)
20 2yxt_A Pyridoxal kinase; beta 43.8 20 0.00068 34.4 4.3 62 365-426 55-117 (312)
21 3gr7_A NADPH dehydrogenase; fl 43.7 14 0.00049 37.1 3.4 76 270-366 138-219 (340)
22 3tml_A 2-dehydro-3-deoxyphosph 43.4 8.4 0.00029 38.7 1.6 90 332-426 108-206 (288)
23 1z41_A YQJM, probable NADH-dep 43.3 31 0.001 34.4 5.7 90 271-381 139-240 (338)
24 3p0t_A Uncharacterized protein 42.4 1.2E+02 0.0041 26.0 8.7 95 131-237 40-134 (138)
25 3oix_A Putative dihydroorotate 38.9 25 0.00085 35.8 4.3 34 357-394 194-227 (345)
26 4a5z_A MITD1, MIT domain-conta 38.4 62 0.0021 30.3 6.5 68 371-438 53-126 (163)
27 3l5a_A NADH/flavin oxidoreduct 38.3 17 0.00057 37.9 3.0 93 269-381 163-275 (419)
28 1jub_A Dihydroorotate dehydrog 37.4 68 0.0023 30.9 7.0 44 349-393 147-194 (311)
29 3l5l_A Xenobiotic reductase A; 36.0 16 0.00055 36.9 2.4 90 270-380 152-256 (363)
30 2ymb_A MITD1, MIT domain-conta 32.1 72 0.0025 31.7 6.2 92 325-438 116-214 (257)
31 3ohe_A Histidine triad (HIT) p 31.9 2.6E+02 0.0088 24.4 9.9 84 142-233 44-129 (137)
32 1ccw_A Protein (glutamate muta 31.5 59 0.002 28.2 5.0 54 362-421 36-91 (137)
33 1miw_A TRNA CCA-adding enzyme; 30.7 57 0.0019 33.6 5.4 62 222-295 154-225 (404)
34 3tml_A 2-dehydro-3-deoxyphosph 30.5 45 0.0015 33.5 4.5 54 132-207 16-71 (288)
35 4ef8_A Dihydroorotate dehydrog 30.4 21 0.00071 36.5 2.1 25 357-381 194-218 (354)
36 3hp4_A GDSL-esterase; psychrot 29.6 83 0.0029 26.6 5.5 26 397-422 86-111 (185)
37 2e6f_A Dihydroorotate dehydrog 29.4 29 0.001 33.6 2.9 32 349-380 149-184 (314)
38 1vfg_A A-adding enzyme, poly A 28.9 66 0.0022 32.8 5.5 61 222-293 149-220 (390)
39 2yxb_A Coenzyme B12-dependent 28.5 1.2E+02 0.0041 27.1 6.6 54 362-421 51-106 (161)
40 2cc0_A Acetyl-xylan esterase; 28.2 96 0.0033 27.9 6.0 55 368-428 135-189 (195)
41 2elc_A Trp D, anthranilate pho 28.1 23 0.00078 35.8 2.0 87 366-477 46-140 (329)
42 1csn_A Casein kinase-1; phosph 28.1 49 0.0017 30.2 4.0 46 270-317 107-159 (298)
43 2o14_A Hypothetical protein YX 27.7 2.9E+02 0.0099 27.6 9.9 63 384-447 229-304 (375)
44 2rf4_B DNA-directed RNA polyme 26.7 28 0.00097 29.7 1.9 24 95-118 60-83 (87)
45 2tpt_A Thymidine phosphorylase 24.2 20 0.0007 37.8 0.8 87 366-477 50-146 (440)
46 2o6l_A UDP-glucuronosyltransfe 23.9 75 0.0025 27.0 4.2 53 368-424 7-61 (170)
47 2qtc_A Pyruvate dehydrogenase 23.5 51 0.0017 37.8 3.8 88 365-463 6-109 (886)
48 1vqu_A Anthranilate phosphorib 23.4 24 0.00081 36.4 1.1 85 366-477 73-177 (374)
49 3s6o_A Polysaccharide deacetyl 22.8 2E+02 0.0068 28.4 7.6 80 373-465 89-169 (321)
50 3p94_A GDSL-like lipase; serin 22.8 71 0.0024 27.3 3.9 31 396-426 96-126 (204)
51 3i3w_A Phosphoglucosamine muta 22.6 1.2E+02 0.004 31.5 6.1 65 359-428 108-184 (443)
52 3qbu_A Putative uncharacterize 22.5 1.9E+02 0.0065 28.4 7.3 77 369-461 76-153 (326)
53 4hkm_A Anthranilate phosphorib 22.4 28 0.00097 35.2 1.4 86 366-477 52-147 (346)
54 1brw_A PYNP, protein (pyrimidi 22.3 20 0.0007 37.8 0.3 87 366-477 49-143 (433)
55 4e9i_A Glucose-6-phosphate 1-d 21.7 40 0.0014 36.8 2.4 59 120-207 295-354 (541)
56 1f76_A Dihydroorotate dehydrog 21.3 53 0.0018 32.2 3.0 25 356-380 211-235 (336)
57 3aql_A Poly(A) polymerase; tra 21.3 92 0.0031 32.3 4.9 60 222-293 178-247 (415)
58 3mil_A Isoamyl acetate-hydroly 21.2 1.6E+02 0.0054 25.8 5.8 30 397-426 96-125 (240)
59 1uou_A Thymidine phosphorylase 20.8 22 0.00075 38.1 0.2 87 366-477 76-171 (474)
60 2cc0_A Acetyl-xylan esterase; 20.7 2.7E+02 0.0093 24.9 7.4 78 364-457 14-91 (195)
61 3zwt_A Dihydroorotate dehydrog 20.4 52 0.0018 33.6 2.8 38 356-394 220-257 (367)
62 2w43_A Hypothetical 2-haloalka 20.4 3.9E+02 0.013 22.6 8.6 67 368-447 130-197 (201)
No 1
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=100.00 E-value=2e-208 Score=1601.35 Aligned_cols=434 Identities=48% Similarity=0.855 Sum_probs=427.1
Q ss_pred CcccccCccccCCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHhcCCeeEEecCCccchhhhcChhhHHHHHH
Q 009610 79 LEGWKTKKALQLPEYPDKAQLETVLKTLEDFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFR 158 (531)
Q Consensus 79 p~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~~k~~ 158 (531)
++|||++|++|||.|| +++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|++|++++|++|++
T Consensus 26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~ 104 (462)
T 3rzi_A 26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR 104 (462)
T ss_dssp HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence 4799999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 009610 159 VLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLN 238 (531)
Q Consensus 159 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~SaaTLn 238 (531)
+|+|||.||+|++++|||||||||||||||||+++| |++||||||||||+.+||+++|+|||+|||+||++|++|||
T Consensus 105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN 181 (462)
T 3rzi_A 105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN 181 (462)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCccccccccccchhhhccCchhhHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc
Q 009610 239 LLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT 318 (531)
Q Consensus 239 ~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt 318 (531)
+||||++||||||+++++||++|+++++.+++|++++++|++||+||++||++.+ .+.+++||||||||||+||+|||
T Consensus 182 llRa~~~gG~Adl~~~~~W~~~fv~~s~~~~~y~~la~~i~~al~Fm~a~G~~~~--~l~~~~~ytSHEaLlL~YE~alt 259 (462)
T 3rzi_A 182 LVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERAML 259 (462)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTCCCG--GGSCCCCEEEEECCCHHHHHHTE
T ss_pred HHHHhccCChhhhhccccchhhhcccChhhhHHHHHHHHHHHHHHHHHHcCCCcc--cccccceeechHhhccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999987 67899999999999999999999
Q ss_pred ccc---CCCCCcccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009610 319 RRD---STSGQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMG 395 (531)
Q Consensus 319 R~d---~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmG 395 (531)
|.| +.+|.||+||||||||||||||+|||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+|||
T Consensus 260 R~d~~~~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~epGRlTLI~RmG 339 (462)
T 3rzi_A 260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMG 339 (462)
T ss_dssp EECCC----CCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEECCC
T ss_pred cccccCCCCCCccccccccceeccccCCCCccHHHHHhcCCCCeeEeECCCCCHHHHHHHHHHhCCCCCCCeEEEEEccC
Confidence 999 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccc
Q 009610 396 AENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTE 475 (531)
Q Consensus 396 a~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTE 475 (531)
|+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+||||||||||||||||
T Consensus 340 a~kv~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~~~~G~KTR~fd~Il~Ev~~ff~vh~~~Gt~~GGvHlE~TG~dVTE 419 (462)
T 3rzi_A 340 NHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTE 419 (462)
T ss_dssp TTTHHHHHHHHHHHHHHTSCCCEEEECCSTTSEEECTTSCEEEBHHHHHHHHHHHHHHHHHHTCCCCEEEEEBCSSCCCC
T ss_pred CchhhhhHHHHHHHHHHCCCCeEEEeCCCCCCceeCCCCCccCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHH
Q 009610 476 CIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 518 (531)
Q Consensus 476 CvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~iA~~l~~ 518 (531)
|+||+..++|+||..||+|+||||||++|||||||+||++|+.
T Consensus 420 C~GG~~~i~e~dL~~rY~T~CDPRLN~~QsLelAflvAe~l~~ 462 (462)
T 3rzi_A 420 CLGGAQDISETDLAGRYETACDPRLNTQQSLELAFLVAEMLRD 462 (462)
T ss_dssp SBBTTTTBCTTGGGTTCCCSSSCCBCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCcccChhhhhhcccccCCcccCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999973
No 2
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=98.05 E-value=0.00046 Score=71.21 Aligned_cols=171 Identities=18% Similarity=0.200 Sum_probs=120.4
Q ss_pred CCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHH-hCCC-----------------CCCCcEEEEe
Q 009610 331 SAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEI-FNPH-----------------NKAGRITIIC 392 (531)
Q Consensus 331 SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~-----------------~~PGRLTLI~ 392 (531)
-.-|+|||-||-+ .-.|.+.++|+.-|||+|=|-..++++.+.-+.. =.|+ ..| .+-||-
T Consensus 156 ~vd~~qIGAR~~e-sq~hr~~asg~~~PVg~Kngt~g~i~~~l~Ai~aa~~~h~fl~~~~~G~~~~v~t~GN~-~~~lil 233 (350)
T 1n8f_A 156 LMSWGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNG-DCHIIL 233 (350)
T ss_dssp GCSEEEECTTTTT-CHHHHHHHHTCSSCEEEECCTTCCSHHHHHHHHHHTSCCEEEEECTTSBEEEEEECCCS-CEEEEE
T ss_pred cCcEEEECCcccc-CHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHHHhCCceeeeeCCCCcEEEEECCCCC-CEEEEE
Confidence 3569999999876 5689999999999999999999999999987333 1222 122 467788
Q ss_pred ccChhHHHhhChH----HHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeee
Q 009610 393 RMGAENMRVKLPH----LIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEM 468 (531)
Q Consensus 393 RmGa~~v~~~LP~----LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~ 468 (531)
|-|.. ...+.. +.+.+++.|.|.-=++||=|||. |-+.+.=-.++.+|.+- ...--...-||-+|.
T Consensus 234 RG~~~--~ny~~~di~~~~~~l~~~~lp~~VivD~SH~ns-----~k~~~~Q~~vv~~laa~---ia~G~~~i~GlmiEs 303 (350)
T 1n8f_A 234 RGGKE--PNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANS-----SKQFKKQMDVCADVCQQ---IAGGEKAIIGVMVES 303 (350)
T ss_dssp CCSSS--CCCSHHHHHHHHHHHHHTTCCCCEEEECSGGGT-----TTCGGGHHHHHHHHHHH---HHTTCCSEEEEEEEB
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHcCCCCeEEEECCCccc-----CccccccHHHHHHHHHH---HHcCCCcccEEEEEe
Confidence 86642 333333 34456778998445799999994 44555556666666632 222224568999996
Q ss_pred cCCCcccccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHhh
Q 009610 469 TGQNVTECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKKR 520 (531)
Q Consensus 469 Tg~~VTECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~iA~~l~~~~ 520 (531)
- =.+|.+.+... -...| .|--||-|+-+.+.+|...+|+.++.+|
T Consensus 304 h------l~dG~Q~l~~~-~~l~yG~SITD~Ci~w~~t~~ll~~la~~~~~r~ 349 (350)
T 1n8f_A 304 H------LVEGNQSLESG-EPLAYGKSITDACIGWEDTDALLRQLANAVKARR 349 (350)
T ss_dssp C------SSSBBCCSSSC-SCCCTTCBSSSCBBCHHHHHHHHHHHHHHHHHHH
T ss_pred c------cCCCCcCCCCC-ccccCCCcCccccCCHHHHHHHHHHHHHHHHHhc
Confidence 5 33566666432 12355 4788999999999999999999998653
No 3
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=97.93 E-value=0.0021 Score=66.24 Aligned_cols=176 Identities=20% Similarity=0.305 Sum_probs=127.2
Q ss_pred cccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHH-hCCCC-----CCCcEEE----------
Q 009610 327 YYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEI-FNPHN-----KAGRITI---------- 390 (531)
Q Consensus 327 ~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~PGRLTL---------- 390 (531)
|+.----|.|||-||-| +--|-|..+|+.-|||+|=|-+.+.++.+.-+.. =+|+. ..|+..+
T Consensus 149 yv~dlvs~~aIGARt~e-nq~hre~asg~s~PVg~Kngt~gti~~ai~Ai~aa~~pH~Fl~~~~~G~~aiv~T~GN~~~H 227 (346)
T 3tqk_A 149 YFAELITWGAIGARTVE-SQVHRELASGLSASIGFKNATNGDVQVAVDAVKSATYPHHFLSTTKSGSTAIFATKGNQNGH 227 (346)
T ss_dssp GTGGGCSEEEECGGGTT-CHHHHHHHTTCSSEEEEECCTTCCSHHHHHHHHHHTSCCEEEEECTTSCEEEEECCCCSCEE
T ss_pred HHHHHhheeeeCccccc-CHHHHHHhcCCCCceEEeCCCCCchHHHhhHHHHHhCCceEEeeCCCCcEEEEECCCCCCEE
Confidence 44334567899999999 4789999999999999999999999887766553 46764 5566554
Q ss_pred -EeccChh---HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCcccee
Q 009610 391 -ICRMGAE---NMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHL 466 (531)
Q Consensus 391 -I~RmGa~---~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHL 466 (531)
|-|=|.. -=.+.+-...++.+++|.+.--|.|.=|||. +-+-+.=-.|+++|..-..- ....=||-+
T Consensus 228 vILRGg~~gpNY~~~~v~~a~~~l~k~~l~~~imVDcSH~NS-----~K~~~~Q~~V~~~v~~q~~~----~~~I~GvMi 298 (346)
T 3tqk_A 228 VILRGGASGPNFSKEHVDDCIAKLKKADINTKVMIDCSHGNS-----QKDHSKQISVLADICEQIKH----SNDIFGVMI 298 (346)
T ss_dssp EEECCCTTCCCCSHHHHHHHHHHHHHTTCCCCEEEESSHHHH-----TTCGGGHHHHHHHHHHHHHH----CSSEEEEEE
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHhCCCCCeEEEecCcccc-----cccHHHHHHHHHHHHHHHhc----CCceeeeeH
Confidence 4576642 1234455677888899999999999999996 44556666777777654433 566778888
Q ss_pred eecCCCcccccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHhh
Q 009610 467 EMTGQNVTECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKKR 520 (531)
Q Consensus 467 E~Tg~~VTECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~iA~~l~~~~ 520 (531)
|- --..|.+.+... ...| .|--||=|+-+.+.+|...+|+.++.+|
T Consensus 299 ES------~l~~G~Q~~~~~--~l~yG~SITD~Ci~W~~T~~ll~~la~~v~~rr 345 (346)
T 3tqk_A 299 ES------NLVAGNQDINKK--PLTYGQSVTDKCVDFEETVKMLEMLAEAVQVRR 345 (346)
T ss_dssp EB------CSEEEECCTTCS--SCCTTEESSSCBBCHHHHHHHHHHHHHHHHHHC
T ss_pred Hh------hhhccCCCCCCC--CCcCCccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 72 112344444332 2345 5888999999999999999999998644
No 4
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=97.74 E-value=0.0019 Score=67.17 Aligned_cols=169 Identities=20% Similarity=0.237 Sum_probs=117.7
Q ss_pred ceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHH-hCCCC-----CCC-----------cEEEEeccCh
Q 009610 334 MLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEI-FNPHN-----KAG-----------RITIICRMGA 396 (531)
Q Consensus 334 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~PG-----------RLTLI~RmGa 396 (531)
|.|||-||-+= --|.+..+|+.-|||+|=|-..++++.+.-+.. =.|+. ..| .+-||-|-|.
T Consensus 174 w~aIGARt~es-q~hre~Asgl~~PVg~Kngt~g~i~~~~~Ai~aa~~~H~Fl~v~~~G~a~~v~t~GN~~~~lilRG~~ 252 (370)
T 1of8_A 174 FGAIGARTTES-QLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGK 252 (370)
T ss_dssp EEEECTTTTTC-HHHHHHHHTCSSCEEEECCTTSCSHHHHHHHHHHTSCCEEEEECTTSBEEEEEECCCSCEEEEECCCT
T ss_pred hccccCccccc-HHHHHHHhcCCCeEEEcCCCCCCHHHHHHHHHHHhCCceeeeeCCCCcEEEEEcCCCCCEEEEECCCC
Confidence 44999999885 899999999999999999999999999876433 22332 111 4678888774
Q ss_pred ---hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCC-cCccceeeecCCC
Q 009610 397 ---ENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGS-HPGGIHLEMTGQN 472 (531)
Q Consensus 397 ---~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs-~~GGvHLE~Tg~~ 472 (531)
.-=+..+......+++.|.+| ++||=|||..+ +-+.-..|..++++-.. .|. ..=||-+|.-.+
T Consensus 253 ~~~nY~~~~vd~~~~~l~~~~~pV--ivD~SHans~k-----~~~~Q~~V~~~~~a~ia----~G~d~i~GlmiEsh~~- 320 (370)
T 1of8_A 253 KGTNYDAKSVAEAKAQLPAGSNGL--MIDYSHGNSNK-----DFRNQPKVNDVVCEQIA----NGENAITGVMIESNIN- 320 (370)
T ss_dssp TCCCCSHHHHHHHHHHCCTTCCCE--EEESSGGGGTS-----CGGGHHHHHHHHHHHHH----TTCCSEEEEEEEBCSS-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCE--EEeCcccchhh-----hhhhhhHHHHHHHHHHH----cCCCcceEEEEEecCC-
Confidence 122334455555667778774 59999997642 23444556666665543 332 345999997655
Q ss_pred cccccCCCCCCCccccc-ccc-ccCCCCCCChHhHHHHHHHHHHHHHHhh
Q 009610 473 VTECIGGSRTVTFDDLS-SRY-HTHCDPRLNASQSLELAFIIAERLRKKR 520 (531)
Q Consensus 473 VTECvGG~~~~~e~dL~-~rY-~T~CDPRLN~~QsLelaf~iA~~l~~~~ 520 (531)
.|.+.+..+++. -.| .|--||=++-+.+..|...+|+.++.+|
T Consensus 321 -----dG~Q~l~~~~~~~L~yG~SitD~Ci~w~~T~~ll~~la~~~~~rr 365 (370)
T 1of8_A 321 -----EGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRR 365 (370)
T ss_dssp -----SBBCCC-------CCTTCBSSSCBBCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCCChhhhhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 788888665542 345 5788999999999999999999998765
No 5
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=88.50 E-value=0.4 Score=49.83 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=67.1
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-------cChhHHHhhCh
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR-------MGAENMRVKLP 404 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R-------mGa~~v~~~LP 404 (531)
..+++||-|+=+ +-.+++.+++..-||.+|=|-..+++|+..-++.+-=... .+|+|.-| ++...+ -|-
T Consensus 226 vd~lkIgs~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~L~~rG~s~yp~~~~~~l--dl~ 301 (385)
T 3nvt_A 226 VDVIQIGARNMQ-NFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGN-GKIILCERGIRTYEKATRNTL--DIS 301 (385)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTC-CCEEEEECCBCCSCCSSSSBC--CTT
T ss_pred CCEEEECccccc-CHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCC-CeEEEEECCCCCCCCCCcccc--CHH
Confidence 568999999855 4689999999999999999999999999999999843322 26999988 233333 233
Q ss_pred HHHHHHHHCCCceEEEcCCCCC
Q 009610 405 HLIRAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 405 ~LI~AV~~aG~~ViW~cDPMHG 426 (531)
.+..--+..|.|| ++||=||
T Consensus 302 ~i~~lk~~~~lpV--~~D~th~ 321 (385)
T 3nvt_A 302 AVPILKKETHLPV--MVDVTHS 321 (385)
T ss_dssp HHHHHHHHBSSCE--EEEHHHH
T ss_pred HHHHHHHhcCCCE--EEcCCCC
Confidence 3333223478887 9999998
No 6
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=82.71 E-value=0.52 Score=46.72 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=61.7
Q ss_pred CCceeecc---ccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC---hhHHHhhChH
Q 009610 332 AHMLWVGE---RTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMG---AENMRVKLPH 405 (531)
Q Consensus 332 aH~lWIGe---RTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmG---a~~v~~~LP~ 405 (531)
.-++|||- ||-. .+..+++..-||++|=|-..+++|+..-++++.-...+ .+.||-|=+ .+...--|-
T Consensus 95 vd~~~IgA~~~rn~~----ll~~~a~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~-~i~L~~rG~~~~y~~~~~dl~- 168 (267)
T 2nwr_A 95 ADIIQIPAFLCRQTD----LLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAK-EIYLTERGTTFGYNNLVVDFR- 168 (267)
T ss_dssp CSEEEECGGGTTCHH----HHHHHHTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCS-SEEEEECCEECSSSCEECCTT-
T ss_pred CCEEEECcccccCHH----HHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHH-
Confidence 45889998 5443 77777899999999999999999999999887533333 799999844 221000121
Q ss_pred HHHHHHHCCCceEEEcCCCCCC
Q 009610 406 LIRAVRREGQIVTWVCDPMHGN 427 (531)
Q Consensus 406 LI~AV~~aG~~ViW~cDPMHGN 427 (531)
-|..+++.| +| ++||=|+|
T Consensus 169 ~i~~lk~~~-pV--ivD~sH~~ 187 (267)
T 2nwr_A 169 SLPIMKQWA-KV--IYDATHSV 187 (267)
T ss_dssp HHHHHTTTS-EE--EEETTGGG
T ss_pred HHHHHHHcC-CE--EEcCCccc
Confidence 344566677 55 57999999
No 7
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=79.89 E-value=4.3 Score=39.79 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHH----h--hChH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMR----V--KLPH 405 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~----~--~LP~ 405 (531)
.-++|||-|+=+ +-..++.++...-||++|=|-+.+++|++.-++.+.-...+ .+.|+-| |-.... . .|-
T Consensus 107 vd~~kIga~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~-~i~L~~R-G~~~~~~y~~~~v~L~- 182 (262)
T 1zco_A 107 SDILQIGARNSQ-NFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNE-NVILCER-GIRTFETATRFTLDIS- 182 (262)
T ss_dssp CSEEEECGGGTT-CHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCC-CEEEEEC-CBCCSCCSSSSBCCTT-
T ss_pred CCEEEECccccc-CHHHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHHCCCC-eEEEEEC-CCCCCCCcChhhcCHH-
Confidence 458899999876 45677788888899999999999999999999998543333 7999998 521111 1 122
Q ss_pred HHHHHHHC-CCceEEEcCCCCCCcc
Q 009610 406 LIRAVRRE-GQIVTWVCDPMHGNTI 429 (531)
Q Consensus 406 LI~AV~~a-G~~ViW~cDPMHGNT~ 429 (531)
-|..+++. |.||+ .||=|+|..
T Consensus 183 ai~~lk~~~~~pVi--~d~sH~~g~ 205 (262)
T 1zco_A 183 AVPVVKELSHLPII--VDPSHPAGR 205 (262)
T ss_dssp HHHHHHHHBSSCEE--ECSSTTTCS
T ss_pred HHHHHHhhhCCCEE--EEcCCCCCc
Confidence 23345554 88843 888899654
No 8
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=79.73 E-value=1.4 Score=44.34 Aligned_cols=89 Identities=26% Similarity=0.355 Sum_probs=61.5
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHH
Q 009610 332 AHMLWVGERT-RQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR---MGAENMRVKLPHLI 407 (531)
Q Consensus 332 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R---mGa~~v~~~LP~LI 407 (531)
.-++|||-|. |+.+ ++..+++..-||++|=|.+++++|+...++.+-=...+ +|+|+-| +|..+..--|-. |
T Consensus 111 vd~lqIgA~~~~n~~--LLr~va~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~-~i~L~erg~~y~~~~~~vdl~~-i 186 (285)
T 3sz8_A 111 ADVLQVPAFLARQTD--LVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGND-RVMLCERGSSFGYDNLVVDMLG-F 186 (285)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHHTSSCEEEECCTTSCGGGTHHHHHHHHHTTCC-CEEEEECCEECSSSCEECCTTH-H
T ss_pred CCEEEECccccCCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCCCCCcCccCHHH-H
Confidence 5588999865 4433 88889999999999999999999999999887322111 5888766 444431112333 3
Q ss_pred HHHHHC--CCceEEEcCCCCC
Q 009610 408 RAVRRE--GQIVTWVCDPMHG 426 (531)
Q Consensus 408 ~AV~~a--G~~ViW~cDPMHG 426 (531)
..+++. |.||+. ||=|.
T Consensus 187 ~~lk~~~~~~pV~~--D~sHs 205 (285)
T 3sz8_A 187 RQMAETTGGCPVIF--DVTHS 205 (285)
T ss_dssp HHHHHHTTSCCEEE--ETTTT
T ss_pred HHHHHhCCCCCEEE--eCCCc
Confidence 334554 789876 88896
No 9
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=70.94 E-value=4.9 Score=39.85 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=67.8
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChh--H-HHhhCh-HHH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAE--N-MRVKLP-HLI 407 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~--~-v~~~LP-~LI 407 (531)
.-+++||-|+=+ +-.|++.+++..-||++|-|-+++++|+..-++.+--...+ .++|+-|.+.. . =...+- .-|
T Consensus 122 vd~~kIgs~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~-~i~L~~Rg~~~yp~y~~~~vdl~~i 199 (276)
T 1vs1_A 122 ADMLQIGARNMQ-NFPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNW-QVVLVERGIRTFEPSTRFTLDVAAV 199 (276)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCC-CEEEEECCBCCSCCSSSSBCBHHHH
T ss_pred CCeEEECccccc-CHHHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCC-eEEEEeCCcCCCCCcCcchhCHHHH
Confidence 457899999887 77799999999999999999999999999999977322222 79999997732 1 111111 124
Q ss_pred HHHHH-CCCceEEEcCCCCCCc
Q 009610 408 RAVRR-EGQIVTWVCDPMHGNT 428 (531)
Q Consensus 408 ~AV~~-aG~~ViW~cDPMHGNT 428 (531)
..+++ .|.+|+ .||=|+|.
T Consensus 200 ~~lk~~~~lpVi--~dssH~~g 219 (276)
T 1vs1_A 200 AVLKEATHLPVI--VDPSHPAG 219 (276)
T ss_dssp HHHHHHBSSCEE--ECCHHHHC
T ss_pred HHHHHHhCCCEE--EeCCCCCC
Confidence 55565 488853 78889864
No 10
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=67.99 E-value=3.8 Score=40.99 Aligned_cols=98 Identities=20% Similarity=0.336 Sum_probs=61.5
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc---ChhHHHhhChHHH
Q 009610 332 AHMLWVGERT-RQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRM---GAENMRVKLPHLI 407 (531)
Q Consensus 332 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~Rm---Ga~~v~~~LP~LI 407 (531)
.-++|||-|- |+.+ .++.+++..-||++|=|-+++++|+..-++++.-...+ .+.|+-|= +...-.--|-.+
T Consensus 109 vd~~kIgA~~~~n~~--Ll~~~a~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~-~i~L~~rg~~~~y~~~~~dl~~i- 184 (292)
T 1o60_A 109 VDIIQLPAFLARQTD--LVEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEECGND-KIILCDRGTNFGYDNLIVDMLGF- 184 (292)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHHTTCEEEEECCTTSCGGGHHHHHHHHHHTTCC-CEEEEECCEECSTTCEECCTTHH-
T ss_pred CCEEEECcccccCHH--HHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHHHH-
Confidence 3578898832 2222 77778888999999999999999999999987533333 79999884 333210123333
Q ss_pred HHHHHC--CCceEEEcCCCCCCcccCCCCc
Q 009610 408 RAVRRE--GQIVTWVCDPMHGNTIKAPCGL 435 (531)
Q Consensus 408 ~AV~~a--G~~ViW~cDPMHGNT~~~~~G~ 435 (531)
..+++. |.+|++ ||=|+|-.-..+|-
T Consensus 185 ~~lk~~~~~~pV~~--D~sH~~q~p~~~~~ 212 (292)
T 1o60_A 185 SVMKKASKGSPVIF--DVTHSLQCRDPFGA 212 (292)
T ss_dssp HHHHHHTTSCCEEE--EHHHHCC-------
T ss_pred HHHHhhCCCCCEEE--ECCCcccccCcccc
Confidence 245555 678764 56699844333333
No 11
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=61.64 E-value=5.4 Score=38.39 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=49.6
Q ss_pred eCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc
Q 009610 363 VSDKMDPNELVKLVEIFNPHN--KAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNT 428 (531)
Q Consensus 363 vGP~~~p~elv~L~~~LnP~~--~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT 428 (531)
.||.++++++.++++.+.=.+ ......++.=+|.....+.+=.+|+..++.|..+.|+|||.-|.+
T Consensus 53 ~g~~~~~~~~~~~~~~~~~~~~l~~~d~v~~G~l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~ 120 (289)
T 3pzs_A 53 TGCVMPASHLTDIVQGIADIDRLKDCDAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHP 120 (289)
T ss_dssp CEEECCHHHHHHHHHHHHHTTCGGGCCEEEECCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEET
T ss_pred ccccCCHHHHHHHHHHHHhcCCccCCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccC
Confidence 367788999999998874221 234566777777777778888888888888888999999975543
No 12
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=59.55 E-value=5.4 Score=41.17 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHH-------hCCCCCCCcEEEEeccChhHHHh--hChHHHHHHHHCCCceEEEcCCCCCCc-ccCCCCc
Q 009610 366 KMDPNELVKLVEI-------FNPHNKAGRITIICRMGAENMRV--KLPHLIRAVRREGQIVTWVCDPMHGNT-IKAPCGL 435 (531)
Q Consensus 366 ~~~p~elv~L~~~-------LnP~~~PGRLTLI~RmGa~~v~~--~LP~LI~AV~~aG~~ViW~cDPMHGNT-~~~~~G~ 435 (531)
.+|+||+..+.+. ++.+..|+.+.-|+=.|-+.-.. .-+..-=-|.++|.+|+ ||||- .++.+|-
T Consensus 72 Get~eEi~g~~~am~~~~~~v~~~~~~~~~vD~~gTGGdg~~T~niSt~~A~v~Aa~Gv~Va-----KHGnR~~ss~~Gs 146 (377)
T 3r88_A 72 APTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVV-----KHGNRAASSLSGG 146 (377)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCTTCSCTTCEEEEECCCCSCCBCCHHHHHHHHHHHTTCCEE-----EEECCCSSSSCCH
T ss_pred CcCHHHHHHHHHHHHHhCCcCCCccCCCCCeEEeCCCCCCcCccccHHHHHHHHHhcCCeEE-----eECCCCCCCcccH
Confidence 3689999888765 46677788887777777664322 22333344667999995 99994 4445562
Q ss_pred cccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009610 436 KTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI 477 (531)
Q Consensus 436 KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTECv 477 (531)
.|+.++. |+.++++.+++-+|+
T Consensus 147 ---------------aDvLEaL-----Gv~~~l~~e~~~~~l 168 (377)
T 3r88_A 147 ---------------ADTLEAL-----GVRIDLGPDLVARSL 168 (377)
T ss_dssp ---------------HHHHHHT-----TCCCCCCHHHHHHHH
T ss_pred ---------------HHHHHHc-----CCCcccchHHHHHHH
Confidence 2444544 788999999999986
No 13
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=55.41 E-value=5.6 Score=38.95 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCC--CCcEEEEeccChhHHHhhChHHHHHHHHCCCc----eEEEcCCCCCCc
Q 009610 364 SDKMDPNELVKLVEIFNPHNK--AGRITIICRMGAENMRVKLPHLIRAVRREGQI----VTWVCDPMHGNT 428 (531)
Q Consensus 364 GP~~~p~elv~L~~~LnP~~~--PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~----ViW~cDPMHGNT 428 (531)
|+.++.+++..+++-+.+... .-...+|.=+|...+.+.+=.+|+.+++.+-. +.|+|||.=|-+
T Consensus 53 g~~~~~~ql~~~~~~~~~~~~~~~~daV~tG~l~s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~ 123 (300)
T 3zs7_A 53 GHRMSLQEYDELMEGVRANNFLSNYRYILTGYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDD 123 (300)
T ss_dssp EEECCHHHHHHHHHHHHHTTCGGGCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC---
T ss_pred CCcCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccC
Confidence 567778888888888877654 33467777788777777777777777765533 789999966644
No 14
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=53.29 E-value=10 Score=37.64 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHH---hhChHHH
Q 009610 332 AHMLWVGERT-RQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMR---VKLPHLI 407 (531)
Q Consensus 332 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~---~~LP~LI 407 (531)
.-+++||-+- |+.+ .++.+++..-||++|=|-+++++|+..-++++--...+ .+.|+-|=+.-.-. -.|- -|
T Consensus 106 ~d~~kIga~~~~n~~--ll~~~a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~-~i~L~~rg~~~~~~~~~~dl~-~i 181 (280)
T 2qkf_A 106 CDVIQLPAFLARQTD--LVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNG-KLILCERGSSFGYDNLVVDML-GF 181 (280)
T ss_dssp CSEEEECGGGTTBHH--HHHHHHHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCC-CEEEEECCEECSTTCEECCTT-HH
T ss_pred CCEEEECcccccCHH--HHHHHHcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHH-HH
Confidence 3578888832 2222 77777889999999999999999999999987433322 79999886532111 1222 34
Q ss_pred HHHHHC--CCceEEEcCCCCCCcccCCCCccc
Q 009610 408 RAVRRE--GQIVTWVCDPMHGNTIKAPCGLKT 437 (531)
Q Consensus 408 ~AV~~a--G~~ViW~cDPMHGNT~~~~~G~KT 437 (531)
..+++. |.+|+ .||=|+|-.-..+|-++
T Consensus 182 ~~lk~~~~~~pV~--~D~sH~~q~~~~~~~~s 211 (280)
T 2qkf_A 182 GVMKQTCGNLPVI--FDVTHSLQTRDAGSAAS 211 (280)
T ss_dssp HHHHHHTTTCCEE--EEHHHHCC---------
T ss_pred HHHHHhCCCCCEE--EECCCCccccCcccccc
Confidence 456666 67776 45669984433334333
No 15
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=53.09 E-value=10 Score=38.38 Aligned_cols=89 Identities=13% Similarity=0.196 Sum_probs=61.9
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHH
Q 009610 332 AHMLWVGERT-RQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR---MGAENMRVKLPHLI 407 (531)
Q Consensus 332 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R---mGa~~v~~~LP~LI 407 (531)
.-++|||-|- |+.+ .+..+++..-||++|=|-+++++|+...++.+-=...+ +|+|+-| +|..+..--|-. |
T Consensus 132 vd~lkIgA~~~~n~~--LLr~va~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~-~iiL~erg~~y~~~~~~vdl~~-i 207 (298)
T 3fs2_A 132 VDVLQIPAFLCRQTD--LLIAAARTGRVVNVKKGQFLAPWDMKNVLAKITESGNP-NVLATERGVSFGYNTLVSDMRA-L 207 (298)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHHTTSEEEEECCTTCCGGGHHHHHHHHHTTTCC-CEEEEECCEECSSSCEECCTTH-H
T ss_pred CCEEEECccccCCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCCCccCHHH-H
Confidence 5688999865 3333 77889999999999999999999999999987432222 6888766 454441111333 3
Q ss_pred HHHHHCCCceEEEcCCCCC
Q 009610 408 RAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 408 ~AV~~aG~~ViW~cDPMHG 426 (531)
..+++.|.||+. ||=|.
T Consensus 208 ~~lk~~~~PV~~--D~sHs 224 (298)
T 3fs2_A 208 PIMAGLGAPVIF--DATHS 224 (298)
T ss_dssp HHHHTTTSCEEE--EHHHH
T ss_pred HHHHHcCCcEEE--cCCCc
Confidence 334557888876 88784
No 16
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=52.51 E-value=8.6 Score=38.66 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++++...+|-+-...+|.| .+++-.+|--|+=.+=++.+ |.|. |..| +-.|.|-
T Consensus 146 eI~~ii~~f~~aA~~a~~aGfD-------gVEih~a~GyLl~qFlsp~~N~R~D~-----yGGs-----lenR~r~---- 204 (349)
T 3hgj_A 146 GMERILQAFVEGARRALRAGFQ-------VIELHMAHGYLLSSFLSPLSNQRTDA-----YGGS-----LENRMRF---- 204 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-------EEEEEECTTSHHHHHHCTTTCCCCST-----TSSS-----HHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEECCccchHHHHhcCCcccccCCC-----CCcC-----HHHHHHH----
Confidence 4455566665665656667765 45888888777655555653 4333 4433 3456553
Q ss_pred hHHHhhhcc------CCceeeeCCC------CCHHHHHHHHHHhCCC
Q 009610 348 HVEFLRGIA------NPLGIKVSDK------MDPNELVKLVEIFNPH 382 (531)
Q Consensus 348 HVeflrgI~------NPIGvKvGP~------~~p~elv~L~~~LnP~ 382 (531)
-+|-++.|+ -|||||++|. .+.+|.+++++.|...
T Consensus 205 ~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~ 251 (349)
T 3hgj_A 205 PLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKEL 251 (349)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHc
Confidence 245555543 4899999994 5667777776666543
No 17
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=52.03 E-value=18 Score=37.27 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=63.7
Q ss_pred CCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC-----hhHHHhhChHH
Q 009610 332 AHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRMG-----AENMRVKLPHL 406 (531)
Q Consensus 332 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmG-----a~~v~~~LP~L 406 (531)
.-+++||-|+=+ +-..+..+++..-||++|=|-+++++|+..-++.+--...+ .+.|+-|.+ ...-.-.|- .
T Consensus 190 vd~lkIgAr~~~-n~~LL~~va~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~-~viLceRG~~typ~~~~~~vdl~-a 266 (350)
T 1vr6_A 190 ADIIQIGARNAQ-NFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNT-KIILCERGIRTFEKATRNTLDIS-A 266 (350)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTCC-CEEEEECCBCCSCCSSSSBCCTT-H
T ss_pred CCEEEECccccc-CHHHHHHHHccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCC-eEEEEeCCCCCCCCcChhhhhHH-H
Confidence 468999999887 56678888889999999999999999999999977322222 688874544 111111222 2
Q ss_pred HHHHHHC-CCceEEEcCCCCCCc
Q 009610 407 IRAVRRE-GQIVTWVCDPMHGNT 428 (531)
Q Consensus 407 I~AV~~a-G~~ViW~cDPMHGNT 428 (531)
|..+++. |.||+ .||=|+|.
T Consensus 267 i~~lk~~~~lpVi--~dssHs~G 287 (350)
T 1vr6_A 267 VPIIRKESHLPIL--VDPSHSGG 287 (350)
T ss_dssp HHHHHHHBSSCEE--ECHHHHHC
T ss_pred HHHHHHhhCCCEE--EeCCCCCc
Confidence 3344544 88853 78889864
No 18
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=48.04 E-value=20 Score=36.35 Aligned_cols=99 Identities=20% Similarity=0.367 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++++...+|-+....+|.| .+++-..|--|+=.+=.+.+ |.|...| | +-.|.|-
T Consensus 137 eI~~ii~~f~~AA~~a~~aGfD-------gVEih~ahGYLl~qFlsp~~N~R~D~yGG-----s-----lenR~rf---- 195 (343)
T 3kru_A 137 EIKSIVKAFGEAAKRANLAGYD-------VVEIHAAHGYLIHEFLSPLSNKRKDEYGN-----S-----IENRARF---- 195 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCS-------EEEEEECTTSHHHHHHCTTTCCCCSTTSS-----S-----HHHHTHH----
T ss_pred HHHHHHHHHHHHHhhccccCCc-------eEEEecccchhHHHhhcccccccchhhcc-----c-----hHhHHHH----
Confidence 3445555555555555667765 45888888776655666654 5554333 2 3356653
Q ss_pred hHHHhhhcc-----C-CceeeeCCC------CCHHHHHHHHHHhCCCCCCCcEEEE
Q 009610 348 HVEFLRGIA-----N-PLGIKVSDK------MDPNELVKLVEIFNPHNKAGRITII 391 (531)
Q Consensus 348 HVeflrgI~-----N-PIGvKvGP~------~~p~elv~L~~~LnP~~~PGRLTLI 391 (531)
-+|-++.|+ + ||+||++|. .+.+|.+++++.|... .-=|++.
T Consensus 196 ~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~--vd~i~vs 249 (343)
T 3kru_A 196 LIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK--VDLIDVS 249 (343)
T ss_dssp HHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT--CSEEEEE
T ss_pred HHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc--ccEEecc
Confidence 245555554 4 999999994 5689999999999866 4456664
No 19
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}
Probab=45.13 E-value=60 Score=31.30 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHH
Q 009610 364 SDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAI 443 (531)
Q Consensus 364 GP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~I 443 (531)
||...-..|++|++.. +.| .|+.. .....+.-|.+|+++.++||.|. .||.+-.. +....-+++
T Consensus 59 G~~~~~~rll~ll~~~---~v~--aTfFv---~g~~~~~~p~~v~~~~~~GhEIg-----~H~~~H~~---~~~~s~~~~ 122 (300)
T 3rxz_A 59 GPLVGVPRLLGILDEF---NVP--GTFFV---PGYTAHRHPEPIRSIARAGHEIA-----HHGYLHES---LVGADEDTE 122 (300)
T ss_dssp HHHTHHHHHHHHHHHT---TCC--EEEEE---CHHHHHHSHHHHHHHHHTTCEEE-----ECCSSCCC---CTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHc---CCC--EEEEE---EHHHHhhCHHHHHHHHHcCCEEE-----ecCCCCcc---cccCCHHHH
Confidence 4444455566666655 454 55544 12333668999999999999887 48876533 455678999
Q ss_pred HHHHHHHHHHHHh-hCCcCc
Q 009610 444 LAEVRAFFDVHEQ-EGSHPG 462 (531)
Q Consensus 444 l~Ev~~ff~vh~~-~Gs~~G 462 (531)
.+||....+++++ .|..+=
T Consensus 123 ~~ei~~~~~~l~~~~G~~p~ 142 (300)
T 3rxz_A 123 RKILTRGIEALEEVAGVHPV 142 (300)
T ss_dssp HHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 9999999999988 565443
No 20
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=43.82 E-value=20 Score=34.36 Aligned_cols=62 Identities=15% Similarity=0.323 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHhCCC-CCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 009610 365 DKMDPNELVKLVEIFNPH-NKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 365 P~~~p~elv~L~~~LnP~-~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 426 (531)
+..+++++.++++.+... -...++.++.=+......+.+-.+++..++.|.++.+++||--+
T Consensus 55 ~~l~~~~i~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~ 117 (312)
T 2yxt_A 55 QVLNSDELQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLG 117 (312)
T ss_dssp EECCHHHHHHHHHHHHHTTCCCCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTCEEEECCCCE
T ss_pred ccCCHHHHHHHHHHHHhcCCccCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEECCCcC
Confidence 367889988877775432 23456755533333344455557788888889888889999744
No 21
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=43.69 E-value=14 Score=37.09 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++++...+|-+....+|.| .+++-.+|--|+=.+=.+.+ |.|. |..| +..|.|-
T Consensus 138 eI~~ii~~f~~aA~~a~~aGfD-------gVEih~a~GyLl~qFlsp~~N~R~D~-----yGGs-----lenR~r~---- 196 (340)
T 3gr7_A 138 DIEETVQAFQNGARRAKEAGFD-------VIEIHAAHGYLINEFLSPLSNRRQDE-----YGGS-----PENRYRF---- 196 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCS-------EEEEEECTTCHHHHHHCTTTCCCCST-----TSSS-----HHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHcCCCccCcCCCc-----ccCC-----HHHHHHH----
Confidence 4455566665555556667764 46888888777766656655 4443 3333 3355552
Q ss_pred hHHHhhhcc----CCceeeeCCC
Q 009610 348 HVEFLRGIA----NPLGIKVSDK 366 (531)
Q Consensus 348 HVeflrgI~----NPIGvKvGP~ 366 (531)
-+|-++.|+ -||+||++|.
T Consensus 197 ~~eiv~avr~~v~~pv~vRls~~ 219 (340)
T 3gr7_A 197 LGEVIDAVREVWDGPLFVRISAS 219 (340)
T ss_dssp HHHHHHHHHHHCCSCEEEEEESC
T ss_pred HHHHHHHHHHhcCCceEEEeccc
Confidence 245555554 5999999996
No 22
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=43.38 E-value=8.4 Score=38.72 Aligned_cols=90 Identities=19% Similarity=0.295 Sum_probs=60.1
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHhCCCCC-----CCcEEEEec---cChhHHHhh
Q 009610 332 AHMLWVGERT-RQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIFNPHNK-----AGRITIICR---MGAENMRVK 402 (531)
Q Consensus 332 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~-----PGRLTLI~R---mGa~~v~~~ 402 (531)
.-++|||-|- |+.+ ++..+++..-||++|=|-+++++|+..-++.+--... ..+|+|.-| +|.+++---
T Consensus 108 vd~lkIgA~~~~n~~--LLr~~a~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y~~~~~~vd 185 (288)
T 3tml_A 108 VDVLQTPAFLCRQTD--FIHACARSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSD 185 (288)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHTSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEECSSSCEECC
T ss_pred CCEEEECcccccCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCCCCCcCcCC
Confidence 4588999854 3333 6777999999999999999999999999988732111 125888765 454432001
Q ss_pred ChHHHHHHHHCCCceEEEcCCCCC
Q 009610 403 LPHLIRAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 403 LP~LI~AV~~aG~~ViW~cDPMHG 426 (531)
|-. |..+++.|.|| ++||=|.
T Consensus 186 l~~-i~~lk~~~~pV--~~D~sHs 206 (288)
T 3tml_A 186 MRS-LAIMRETNAPV--VFDATHS 206 (288)
T ss_dssp HHH-HHHGGGGSSCE--EEEHHHH
T ss_pred HHH-HHHHHhcCCcE--EEcCCcc
Confidence 222 22235578888 5688884
No 23
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=43.31 E-value=31 Score=34.35 Aligned_cols=90 Identities=22% Similarity=0.334 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCchh
Q 009610 271 YQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGAH 348 (531)
Q Consensus 271 y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAH 348 (531)
-+++.+...+|-+....+|.| .+++-.+|--|+-.+=++.| |.|. |..| +-.|.|. -
T Consensus 139 I~~~i~~~~~aA~~a~~aGfD-------gVeih~~~gyLl~qFlsp~~n~R~d~-----yGGs-----lenr~r~----~ 197 (338)
T 1z41_A 139 VKETVQEFKQAAARAKEAGFD-------VIEIHAAHGYLIHEFLSPLSNHRTDE-----YGGS-----PENRYRF----L 197 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS-------EEEEEECTTSHHHHHHCTTTCCCCST-----TSSS-----HHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEeccccchHHHHccCCCcCCcCcc-----cCcc-----hhhhHHH----H
Confidence 344555555555555566764 45788888777766666665 4443 3322 2345442 2
Q ss_pred HHHhhhc----cCCceeeeCC------CCCHHHHHHHHHHhCC
Q 009610 349 VEFLRGI----ANPLGIKVSD------KMDPNELVKLVEIFNP 381 (531)
Q Consensus 349 VeflrgI----~NPIGvKvGP------~~~p~elv~L~~~LnP 381 (531)
+|-++.| .-||+||++| ..+.++.+++++.|..
T Consensus 198 ~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~ 240 (338)
T 1z41_A 198 REIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKE 240 (338)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHH
Confidence 4566666 4699999999 4566677776666653
No 24
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=42.40 E-value=1.2e+02 Score=25.97 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCeeEEecCCccchhhhcChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCC
Q 009610 131 GNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNIN 210 (531)
Q Consensus 131 G~AFlLQgGDCAEsF~e~~~~~i~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN 210 (531)
|...|+== .-.++|.|.+++.+.+-++++..++..|....+..-+.+ ++|||=- | -+-=.-+|-|.||-.|
T Consensus 40 gH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~-~~~gq~v-~------HlH~HiiPr~~~d~~~ 110 (138)
T 3p0t_A 40 GHTLVVPR-EEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGL-IIAGLEV-P------HLHVHVFPTRSLSDFG 110 (138)
T ss_dssp TCEEEEES-SCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEE-EECCSSC-S------SCCEEEEEESCGGGSS
T ss_pred cEEEEEEh-HHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE-EECCccc-C------EEEEEEeccccCCCCc
Confidence 44444443 236788999999999999999999988866555554555 3677722 1 1122347889987555
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHH
Q 009610 211 GDAFDEKSRVPDPERLIRAYCQSAATL 237 (531)
Q Consensus 211 ~~~f~~~aR~PDP~Rll~aY~~SaaTL 237 (531)
|.......+|+-|-+.|..=+..|
T Consensus 111 ---~~~~~~~~~~~~l~~~~~~l~~~l 134 (138)
T 3p0t_A 111 ---FANVDRNPSPESLDEAQAKIKAAL 134 (138)
T ss_dssp ---STTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ---ccCCCCCCCHHHHHHHHHHHHHHH
Confidence 333467788888777776655444
No 25
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=38.91 E-value=25 Score=35.78 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=27.6
Q ss_pred CCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009610 357 NPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRM 394 (531)
Q Consensus 357 NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~Rm 394 (531)
=||.||+.|..+.+|+.++++.+.-+. |++|.+.
T Consensus 194 ~PV~vKi~p~~~~~~~a~~~~~aga~~----i~~int~ 227 (345)
T 3oix_A 194 KPLGIKLPPYFDIVHFDQAAAIFNXYP----LTFVNCI 227 (345)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHHTTSC----CSEEEEC
T ss_pred CCeEEEECCCCCHHHHHHHHHHhCCCc----eEEEEee
Confidence 399999999999999999999987543 5565544
No 26
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=38.39 E-value=62 Score=30.26 Aligned_cols=68 Identities=13% Similarity=0.278 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCC-CCCCcEEEEeccCh----hHHHhhChHHHHHHHHCCCceEEEcCC-CCCCcccCCCCcccc
Q 009610 371 ELVKLVEIFNPH-NKAGRITIICRMGA----ENMRVKLPHLIRAVRREGQIVTWVCDP-MHGNTIKAPCGLKTR 438 (531)
Q Consensus 371 elv~L~~~LnP~-~~PGRLTLI~RmGa----~~v~~~LP~LI~AV~~aG~~ViW~cDP-MHGNT~~~~~G~KTR 438 (531)
-++++|+.|=-. ..+-.|.|||..-. ++..+.|-.|=+.....|....|..|. +|---+.+.+|.+..
T Consensus 53 NfvrF~Ellvk~~~~~~~I~L~T~~d~~~~~~~Q~~~L~~ik~sL~~~gI~l~~~fs~tiHDR~I~~dnGW~Ik 126 (163)
T 4a5z_A 53 NFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIK 126 (163)
T ss_dssp HHHHHHHHHHC--CCCCEEEEEECCCCSTTHHHHHHHHHHHHHHHHHTTCEEEEEECTTCCCCEEEETTSEEEE
T ss_pred HHHHHHHHHHhcCCCccEEEEEeCCccccCHHHHHHHHHHHHHHHHHCCCEEEEEeCCCccceEEEecCCeEEE
Confidence 478888886322 24557999999843 455788999999999999999999886 999999999998764
No 27
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=38.34 E-value=17 Score=37.92 Aligned_cols=93 Identities=16% Similarity=0.293 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCc
Q 009610 269 DRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDG 346 (531)
Q Consensus 269 ~~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDg 346 (531)
++-+++++...+|-+....+|.| .+++-..|--|+=.+=++.| |.|...|.. +-.|.|-
T Consensus 163 ~eI~~ii~~F~~AA~rA~~AGfD-------gVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~---------lenR~Rf--- 223 (419)
T 3l5a_A 163 EKINSIIQQYRDATLRAIKAGFD-------GVEISIAQRLLIQTFFSTFSNRRTDHYGADS---------LKNRARL--- 223 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCS-------EEEEECCTTSHHHHHHCTTTCCCCSTTSTTC---------HHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-------EEEECCccchHHHHccCCcccccccCCCCch---------hhhhhHH---
Confidence 34556666666666666677865 45888888777766666655 555433331 0245542
Q ss_pred hhHHHhhhccC----------CceeeeCC--------CCCHHHHHHHHHHhCC
Q 009610 347 AHVEFLRGIAN----------PLGIKVSD--------KMDPNELVKLVEIFNP 381 (531)
Q Consensus 347 AHVeflrgI~N----------PIGvKvGP--------~~~p~elv~L~~~LnP 381 (531)
-+|-++.|+. |||||++| +.+.+|.+++++.|.-
T Consensus 224 -~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~ 275 (419)
T 3l5a_A 224 -CLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMD 275 (419)
T ss_dssp -HHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHh
Confidence 2444444442 89999999 5678888888887764
No 28
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=37.41 E-value=68 Score=30.95 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=31.4
Q ss_pred HHHhhhcc----CCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 009610 349 VEFLRGIA----NPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICR 393 (531)
Q Consensus 349 VeflrgI~----NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~R 393 (531)
.++++.|+ =||.||+.|..+.+++.++++.+.-....| |+++.|
T Consensus 147 ~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~-i~v~~~ 194 (311)
T 1jub_A 147 EKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTY-VNSVNS 194 (311)
T ss_dssp HHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCE-EEECCC
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcE-EEecCC
Confidence 45666554 399999999999999999999886444332 444433
No 29
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=36.00 E-value=16 Score=36.93 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALT--RRDSTSGQYYDCSAHMLWVGERTRQLDGA 347 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 347 (531)
+-+++++...+|-+-...+|.| .+++-..|--|+-.|=.+.| |.|. |..| +-.|.|-
T Consensus 152 eI~~ii~~f~~aA~~a~~aGfD-------gVEih~a~GyLl~qFlsp~~N~R~D~-----yGGs-----lenR~r~---- 210 (363)
T 3l5l_A 152 DIARVKQDFVDAARRARDAGFE-------WIELHFAHGYLGQSFFSEHSNKRTDA-----YGGS-----FDNRSRF---- 210 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCS-------EEEEEECTTSHHHHHHCTTTCCCCST-----TSSS-----HHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHccCCCcCCCCcc-----cCcC-----HHHHHHH----
Confidence 4455666666665656667765 46888888777766666665 4443 3333 2345542
Q ss_pred hHHHhhhcc------CCceeeeCCC-------CCHHHHHHHHHHhC
Q 009610 348 HVEFLRGIA------NPLGIKVSDK-------MDPNELVKLVEIFN 380 (531)
Q Consensus 348 HVeflrgI~------NPIGvKvGP~-------~~p~elv~L~~~Ln 380 (531)
-+|-++.|+ -|||||++|. .+.+|.+++++.|.
T Consensus 211 ~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~ 256 (363)
T 3l5l_A 211 LLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFK 256 (363)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHH
Confidence 244455554 2899999885 34445555555544
No 30
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=32.07 E-value=72 Score=31.65 Aligned_cols=92 Identities=13% Similarity=0.350 Sum_probs=67.7
Q ss_pred CCcccCCCCceeeccccCCCCchhHHHhhhccCCceeeeCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccCh----hH
Q 009610 325 GQYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMDPNELVKLVEIF--NPHNKAGRITIICRMGA----EN 398 (531)
Q Consensus 325 g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L--nP~~~PGRLTLI~RmGa----~~ 398 (531)
|.|.+-++--+|| +.++|...-.|.| |+++|+.| +|.++. +|.|||..-. ++
T Consensus 116 g~yl~~~~~~i~i-------~DPYir~~hQ~~N--------------l~~f~E~~vk~~~~~~-~i~L~T~~d~~~~~~~ 173 (257)
T 2ymb_A 116 REYLNETVTEVWI-------EDPYIRHTHQLYN--------------FLRFCEMLIKRPCKVK-TIHLLTSLDEGIEQVQ 173 (257)
T ss_dssp STTCSTTCCEEEE-------ECSCCCSHHHHHH--------------HHHHHHHHTC--CCCC-EEEEEECCCSSTTHHH
T ss_pred HHHHhcCCeEEEE-------eCceecchHHHHH--------------HHHHHHHHhhccCccc-eEEEEecCCCcccHHH
Confidence 3444456777887 4455555555555 77888886 566655 8999998753 24
Q ss_pred HHhhChHHHHHHHHCCCceEEEcCC-CCCCcccCCCCcccc
Q 009610 399 MRVKLPHLIRAVRREGQIVTWVCDP-MHGNTIKAPCGLKTR 438 (531)
Q Consensus 399 v~~~LP~LI~AV~~aG~~ViW~cDP-MHGNT~~~~~G~KTR 438 (531)
..+.|-.|-+.....|....|..|+ +|---+++.+|.+..
T Consensus 174 q~~~l~~ik~sl~~~gi~~~~~~~~tiHDR~I~~dnGW~Ik 214 (257)
T 2ymb_A 174 QSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIK 214 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTTCCCCEEEETTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCCccceeEEecCCcEEE
Confidence 5567889999999999999999977 899999999998764
No 31
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=31.93 E-value=2.6e+02 Score=24.38 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=58.7
Q ss_pred cchhhhcChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCCeecccccCCcCCC-CCCC-CCCC
Q 009610 142 AESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNING-DAFD-EKSR 219 (531)
Q Consensus 142 AEsF~e~~~~~i~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~-~~f~-~~aR 219 (531)
.+++.|.+++...+-+..+..++..|....+..-+.|| .|||-- | -+-=.-+|-|.||.... +-+. ...+
T Consensus 44 ~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-~------HlH~HviPR~~~D~~~p~~vw~~~~~~ 115 (137)
T 3ohe_A 44 IREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-ALGNMV-P------QLHLHHIVRYQGDPAWPGPVWGKQPPV 115 (137)
T ss_dssp CCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-ECCSSC-C------SCCEEEEEECTTSTTTTSCCTTSSCCC
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-eccCcC-C------EEEEEEeCCCCCCCCCCcccccCCCCC
Confidence 57889999999988999999999999888777789999 899852 1 12235689999997542 2222 2345
Q ss_pred CCChhHHHHHHHHH
Q 009610 220 VPDPERLIRAYCQS 233 (531)
Q Consensus 220 ~PDP~Rll~aY~~S 233 (531)
..|++-|-.-+..-
T Consensus 116 ~~~~eel~~~~~~i 129 (137)
T 3ohe_A 116 PYTEEQQASVKAKL 129 (137)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 56676554444433
No 32
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=31.53 E-value=59 Score=28.21 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=41.2
Q ss_pred eeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 009610 362 KVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQ--IVTWVC 421 (531)
Q Consensus 362 KvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~--~ViW~c 421 (531)
-+|+..+++++++.+...||+- +-|-+-++. .. ..+|.+|+++++.|. ..+|+.
T Consensus 36 ~lG~~~p~e~~v~~a~~~~~d~----v~lS~~~~~-~~-~~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 36 NIGVLSPQELFIKAAIETKADA----ILVSSLYGQ-GE-IDCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp EEEEEECHHHHHHHHHHHTCSE----EEEEECSST-HH-HHHTTHHHHHHHTTCTTCEEEEE
T ss_pred ECCCCCCHHHHHHHHHhcCCCE----EEEEecCcC-cH-HHHHHHHHHHHhcCCCCCEEEEE
Confidence 3799999999999999999862 334444543 33 468999999999986 556775
No 33
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=30.73 E-value=57 Score=33.63 Aligned_cols=62 Identities=23% Similarity=0.173 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHH--------HHHHHHHhhhcCCccccccccccchhhhccCchhhHHHHHHH--HHHHHHhHHHHhcCC
Q 009610 222 DPERLIRAYCQSA--------ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAH--RVDEALGFMAAAGLT 291 (531)
Q Consensus 222 DP~Rll~aY~~Sa--------aTLn~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~--~i~~al~Fm~a~G~~ 291 (531)
||-|||+|+..++ .|++.|+.... . +..+.......++.++.. ....+|..|..+|+-
T Consensus 154 DPlRiLRa~Rfaa~lgf~i~~~T~~ai~~~~~-~-----------l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll 221 (404)
T 1miw_A 154 DALRMMRAVRFVSELGFALAPDTEQAIVQNAP-L-----------LAHISVERMTMEMEKLLGGPFAARALPLLAETGLN 221 (404)
T ss_dssp CTHHHHHHHHHHHHHCCEECHHHHHHHHHHGG-G-----------GGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTT
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-h-----------hccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcch
Confidence 9999999999887 57777775442 1 111111122233333332 235678999999986
Q ss_pred CCCC
Q 009610 292 LDHP 295 (531)
Q Consensus 292 ~~~~ 295 (531)
..-|
T Consensus 222 ~~lP 225 (404)
T 1miw_A 222 AYLP 225 (404)
T ss_dssp TSST
T ss_pred hhCc
Confidence 5433
No 34
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=30.52 E-value=45 Score=33.46 Aligned_cols=54 Identities=31% Similarity=0.450 Sum_probs=23.6
Q ss_pred CeeEEecCCcc-chhhhcChhhHHHHHHHHHHHHHHHhhcCCCCeEeeeccccCCCC-CCCCcccccCCeecccccCC
Q 009610 132 NAFLLQGGDCA-ESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAK-PRSDPFEVKNGVKLPSYKGD 207 (531)
Q Consensus 132 ~AFlLQgGDCA-EsF~e~~~~~i~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAK-PRS~~~E~~~G~~LPsYRGD 207 (531)
+.|++=+|=|+ |+ .+.+.+..+-|...+..+. .++| +-+-|-| ||+++. ||||-
T Consensus 16 ~~~~vIaGPCsie~-----~~~~~e~A~~lk~~~~~~~----~~~v----~k~~f~KapRTs~~---------sf~Gl 71 (288)
T 3tml_A 16 QPFFLIAGTCVVES-----EQMTIDTAGRLKEICEKLN----VPFI----YKSSYDKANRSSGK---------SFRGL 71 (288)
T ss_dssp SCCEEEEECSBCCC-----HHHHHHHHHHHHHHHHHHT----CCEE----EECBC-----------------------
T ss_pred CceEEEEeCCcCCC-----HHHHHHHHHHHHHHHHHcC----CCEE----EecccccCCCCCCC---------CcCCc
Confidence 45888888897 43 4455555555544444332 5555 3567888 999987 88886
No 35
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=30.42 E-value=21 Score=36.50 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCceeeeCCCCCHHHHHHHHHHhCC
Q 009610 357 NPLGIKVSDKMDPNELVKLVEIFNP 381 (531)
Q Consensus 357 NPIGvKvGP~~~p~elv~L~~~LnP 381 (531)
-||.||+.|..+.+++.++++.++-
T Consensus 194 ~PV~vKi~p~~d~~~~~~~a~~~~~ 218 (354)
T 4ef8_A 194 HSFGVKMPPYFDFAHFDAAAEILNE 218 (354)
T ss_dssp SCEEEEECCCCSHHHHHHHHHHHHT
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHh
Confidence 4999999999999999999988863
No 36
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=29.65 E-value=83 Score=26.62 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=22.4
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcC
Q 009610 397 ENMRVKLPHLIRAVRREGQIVTWVCD 422 (531)
Q Consensus 397 ~~v~~~LP~LI~AV~~aG~~ViW~cD 422 (531)
+.+.+.|-.+|+.+++.|.+|+|++=
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~vvl~~~ 111 (185)
T 3hp4_A 86 KKMQTNLTALVKKSQAANAMTALMEI 111 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34577888999999999999999984
No 37
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=29.41 E-value=29 Score=33.57 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=25.8
Q ss_pred HHHhhhcc----CCceeeeCCCCCHHHHHHHHHHhC
Q 009610 349 VEFLRGIA----NPLGIKVSDKMDPNELVKLVEIFN 380 (531)
Q Consensus 349 VeflrgI~----NPIGvKvGP~~~p~elv~L~~~Ln 380 (531)
.++++.|+ -||.||++|..+.+++.++++.+.
T Consensus 149 ~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~ 184 (314)
T 2e6f_A 149 RTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLN 184 (314)
T ss_dssp HHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 45555553 499999999999999999998875
No 38
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=28.91 E-value=66 Score=32.78 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=36.9
Q ss_pred ChhHHHHHHHHHH--------HHHHHHHhhhcCC-ccccccccccchhhhccCchhhHHHHHHH--HHHHHHhHHHHhcC
Q 009610 222 DPERLIRAYCQSA--------ATLNLLRSFATGG-YAAMQRVTQWNLDFAEHSEQGDRYQELAH--RVDEALGFMAAAGL 290 (531)
Q Consensus 222 DP~Rll~aY~~Sa--------aTLn~lRa~~~gg-~a~l~~~~~w~~~f~~~s~~~~~y~~l~~--~i~~al~Fm~a~G~ 290 (531)
||-|||+++..++ .|++.|+.....+ +..+ .......++.++.. ....+++.|..+|+
T Consensus 149 DPlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~~~~~l~~~-----------s~eRi~~El~kiL~~~~~~~~l~~l~~~gl 217 (390)
T 1vfg_A 149 DPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEA-----------PRGRLINEIKLALREDRFLEILELYRKYRV 217 (390)
T ss_dssp CTTHHHHHHHHHHHHTCEECHHHHHHHHHHHHTTGGGTS-----------CHHHHHHHHHHHHHCSSHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhhcc-----------CHHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 9999999999887 4777787654321 2211 11112233444433 23567889999987
Q ss_pred CCC
Q 009610 291 TLD 293 (531)
Q Consensus 291 ~~~ 293 (531)
-..
T Consensus 218 L~~ 220 (390)
T 1vfg_A 218 LEE 220 (390)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 39
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=28.52 E-value=1.2e+02 Score=27.09 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=41.5
Q ss_pred eeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 009610 362 KVSDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQ--IVTWVC 421 (531)
Q Consensus 362 KvGP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~--~ViW~c 421 (531)
=.|...+++++++.+...+|+- |-|-+.++. .+ ..++.+|+++++.|. ..||+.
T Consensus 51 ~lG~~~p~e~lv~aa~~~~~di----V~lS~~~~~-~~-~~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 51 YTGLRQTPEQVAMAAVQEDVDV----IGVSILNGA-HL-HLMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp CCCSBCCHHHHHHHHHHTTCSE----EEEEESSSC-HH-HHHHHHHHHHHHTTCTTSCEEEE
T ss_pred ECCCCCCHHHHHHHHHhcCCCE----EEEEeechh-hH-HHHHHHHHHHHhcCCCCCEEEEe
Confidence 3588999999999999999872 334445553 33 678999999999984 567876
No 40
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=28.17 E-value=96 Score=27.91 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc
Q 009610 368 DPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNT 428 (531)
Q Consensus 368 ~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT 428 (531)
+++++++.+.. ..||-|.|.-=.. ..-.+.||.+|+..++.|+.++-+.+=| |+.
T Consensus 135 ~~~~i~~~~~~----~~~g~IiL~Hd~~-~~t~~al~~ii~~l~~~Gy~~v~l~~~~-~~~ 189 (195)
T 2cc0_A 135 STDAIVQAVSR----LGNGQVILMHDWP-ANTLAAIPRIAQTLAGKGLCSGMISPQT-GRA 189 (195)
T ss_dssp CHHHHHHHHHT----CCTTCEEEEESSC-HHHHHHHHHHHHHHHHTTEEECEECTTT-SSE
T ss_pred CHHHHHHHHhC----cCcCeEEEECCCc-hhHHHHHHHHHHHHHHCCCEEEEeCccc-CCC
Confidence 57777776653 4578888887443 4455789999999999999999876654 443
No 41
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=28.13 E-value=23 Score=35.80 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHh----CCCCCC-CcEEEEeccChhHHHh--hChHHHHHHHHCCCceEEEcCCCCCCcc-cCCCCccc
Q 009610 366 KMDPNELVKLVEIF----NPHNKA-GRITIICRMGAENMRV--KLPHLIRAVRREGQIVTWVCDPMHGNTI-KAPCGLKT 437 (531)
Q Consensus 366 ~~~p~elv~L~~~L----nP~~~P-GRLTLI~RmGa~~v~~--~LP~LI~AV~~aG~~ViW~cDPMHGNT~-~~~~G~KT 437 (531)
.+|++|+..+.+.+ .|=..+ +.+.=|+=.|-|.-.. .-+...--+.++|.+| +||||-- ++.+|-
T Consensus 46 get~~Eiag~~~am~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~a~v~Aa~Gv~V-----~kHGnr~~ss~~Gs-- 118 (329)
T 2elc_A 46 GERPHEIAAMARAMREAARPLRVHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAV-----AKHGNRAASSRAGS-- 118 (329)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCCCCSSEEEEEECCCCSSCCCCCHHHHHHHHHHTTCEE-----EEEECCCTTTTCSH--
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCeeEEcCCCCCCCCccccHHHHHHHHHhCCCCE-----EEeCCCCCCCcccH--
Confidence 36899998777543 232222 4444455555543322 1233444578899999 6999944 344552
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009610 438 RPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI 477 (531)
Q Consensus 438 R~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTECv 477 (531)
-|+.++. |+.++++.+++-+|+
T Consensus 119 -------------aDvLeaL-----G~~~~~~~~~~~~~l 140 (329)
T 2elc_A 119 -------------ADLLEAL-----GVDLEAPPERVGEAI 140 (329)
T ss_dssp -------------HHHHHHT-----TCCTTCCHHHHHHHH
T ss_pred -------------HHHHHhC-----CCCCCCCHHHHHHHH
Confidence 2445553 678889999988886
No 42
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=28.11 E-value=49 Score=30.15 Aligned_cols=46 Identities=7% Similarity=0.097 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCCCCccceeeccc-------cccccccccc
Q 009610 270 RYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHE-------CLLLPYEQAL 317 (531)
Q Consensus 270 ~y~~l~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHE-------aLlL~YE~al 317 (531)
.-..++.+|-++|.||+..|+-.. .+....++.+.+ .-+.||..+-
T Consensus 107 ~~~~i~~qi~~~l~~lH~~~ivH~--Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~ 159 (298)
T 1csn_A 107 TVAMAAKQMLARVQSIHEKSLVYR--DIKPDNFLIGRPNSKNANMIYVVDFGMVK 159 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTTEECC--CCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCEecC--CCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence 456789999999999999987654 455567777654 5577877663
No 43
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=27.69 E-value=2.9e+02 Score=27.60 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=41.2
Q ss_pred CCCcEEEEe-------c---cChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCc---cccchhHHHHHH
Q 009610 384 KAGRITIIC-------R---MGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGL---KTRPFDAILAEV 447 (531)
Q Consensus 384 ~PGRLTLI~-------R---mGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~---KTR~f~~Il~Ev 447 (531)
.||.+.+|. + .-.+.+.+.|-.+|+.+++.|.+|+++. |+..+......|. ....+.+++.|+
T Consensus 229 ~p~d~VvI~~G~ND~~~~~~~~~~~~~~~l~~ii~~lr~~~a~vilvt-P~~~~~~~~~~~~~~~~~~~~~~~i~~l 304 (375)
T 2o14_A 229 KPGDYFMLQLGINDTNPKHKESEAEFKEVMRDMIRQVKAKGADVILST-PQGRATDFTSEGIHSSVNRWYRASILAL 304 (375)
T ss_dssp CTTCEEEEECCTGGGCGGGCCCHHHHHHHHHHHHHHHHTTTCEEEEEC-CCCCTTCBCTTSCBCCTTSTTHHHHHHH
T ss_pred CCCCEEEEEEEccCCCccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC-CCCcccccCcccchhHHHHHHHHHHHHH
Confidence 467777773 1 1346677889999999999999998876 8876541222342 234555666665
No 44
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=26.68 E-value=28 Score=29.68 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHhcCCCCcCHHHH
Q 009610 95 DKAQLETVLKTLEDFPPLVFAGEA 118 (531)
Q Consensus 95 D~~~l~~v~~~L~~lPPLV~a~Ei 118 (531)
--.+|..|.+-|+.|||++...|.
T Consensus 60 ~LsQLKRvQRdlrGLPP~~~e~~~ 83 (87)
T 2rf4_B 60 SISQLKRIQRDFKGLPPAQDFSAA 83 (87)
T ss_dssp HHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhcCCCcchhcccC
Confidence 346799999999999999987663
No 45
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=24.19 E-value=20 Score=37.85 Aligned_cols=87 Identities=22% Similarity=0.143 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHH-------hCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc-ccCCCCc
Q 009610 366 KMDPNELVKLVEI-------FNPHN--KAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNT-IKAPCGL 435 (531)
Q Consensus 366 ~~~p~elv~L~~~-------LnP~~--~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT-~~~~~G~ 435 (531)
.+|++|+..+.+. ++... .+|.+.=|.=.|-+.- ..-+.+.--|.+.|.+| |||||- .++.+|-
T Consensus 50 Get~eEiag~~~Am~~~~~~~~~~~~~~~~~~vD~~gTGGdG~-~iSt~~A~vvAa~Gv~V-----aKHGnR~~ss~~Gs 123 (440)
T 2tpt_A 50 DMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGD-VTSLMLGPMVAACGGYI-----PMISGRGLGHTGGT 123 (440)
T ss_dssp CCCHHHHHHHHHHHHHTSBCCCCTTTTCSSCBEEEEECCCSSC-CHHHHHHHHHHHTTCBE-----EEEECCCCTTSCCH
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCcccccCCCeeeeCCCCCCCc-cHHHHHHHHHHhCCCcE-----EEECCCCCCCcccH
Confidence 4789999987754 34322 2233332333332211 13344445578889999 799994 4455661
Q ss_pred cccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009610 436 KTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI 477 (531)
Q Consensus 436 KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTECv 477 (531)
.|+| ++. -|+.++++.+++.+|+
T Consensus 124 -----aDvL----------EaL----~Gv~~~ls~e~~~~~l 146 (440)
T 2tpt_A 124 -----LDKL----------ESI----PGFDIFPDDNRFREII 146 (440)
T ss_dssp -----HHHH----------TTS----TTCCSCCCHHHHHHHH
T ss_pred -----HHHH----------HhC----cCCCCCCCHHHHHHHH
Confidence 2333 332 3678889999888885
No 46
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=23.89 E-value=75 Score=27.02 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEE--eccChhHHHhhChHHHHHHHHCCCceEEEcCCC
Q 009610 368 DPNELVKLVEIFNPHNKAGRITII--CRMGAENMRVKLPHLIRAVRREGQIVTWVCDPM 424 (531)
Q Consensus 368 ~p~elv~L~~~LnP~~~PGRLTLI--~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPM 424 (531)
-|+|+.+.++.- .+.++.+| .++|+..-.+.+..++++.++.+..++|+|++.
T Consensus 7 l~~~~~~~l~~~----~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~ 61 (170)
T 2o6l_A 7 LPKEMEDFVQSS----GENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGN 61 (170)
T ss_dssp CCHHHHHHHHTT----TTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSS
T ss_pred CCHHHHHHHHcC----CCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 367777665431 12233333 344433345678899999998899999999854
No 47
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=23.52 E-value=51 Score=37.75 Aligned_cols=88 Identities=23% Similarity=0.276 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEc-CCCCCCcc------cCCCCccc
Q 009610 365 DKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVC-DPMHGNTI------KAPCGLKT 437 (531)
Q Consensus 365 P~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~c-DPMHGNT~------~~~~G~KT 437 (531)
|..+|+|-.+.++.|+ .+|.+-|.++.+-.|-.|++..++.|..+--.. .-+-=||| ..|.-+
T Consensus 6 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~p~d~-- 75 (886)
T 2qtc_A 6 NDVDPIETRDWLQAIE--------SVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNYINTIPVEEQPEYPGNL-- 75 (886)
T ss_dssp ----------------------------------------------------------CCCSSCSSCGGGCCCCCSCH--
T ss_pred CCCChHHHHHHHHHHH--------HHHHHhCHHHHHHHHHHHHHHHHHcCCCCCCCccCCchhhhCCCccccCCCchH--
Confidence 6678899999999988 588999999999999999999999998776555 44557999 555443
Q ss_pred cchh-HHHHHHHHHH--HHHHhh------CCcCcc
Q 009610 438 RPFD-AILAEVRAFF--DVHEQE------GSHPGG 463 (531)
Q Consensus 438 R~f~-~Il~Ev~~ff--~vh~~~------Gs~~GG 463 (531)
.++ .+.+|||.+. -|+++. |.|+|+
T Consensus 76 -~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs 109 (886)
T 2qtc_A 76 -ELERRIRSAIRWNAIMTVLRASKKDLELGGHMAS 109 (886)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCC
Confidence 455 6788888865 456656 899986
No 48
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=23.42 E-value=24 Score=36.39 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHhC----CC--------CCC---CcEEEEeccChhHHHhhC----hHHHHHHHHCCCceEEEcCCCCC
Q 009610 366 KMDPNELVKLVEIFN----PH--------NKA---GRITIICRMGAENMRVKL----PHLIRAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 366 ~~~p~elv~L~~~Ln----P~--------~~P---GRLTLI~RmGa~~v~~~L----P~LI~AV~~aG~~ViW~cDPMHG 426 (531)
.+|++|+..+.+.+- +- ..+ +.+.=| .|.....+.- +...--|.++|.+| +|||
T Consensus 73 Get~eEiag~~~am~~~~~~~~~~~~~~~~~~~~~~~~vD~--~gTGGdg~~tfNiSt~~A~v~Aa~Gv~V-----aKHG 145 (374)
T 1vqu_A 73 GVSADELTGMAEVLQSQSKMGTGENYSQLPITNSPFSIIDT--CGTGGDGSSTFNISTAVAFVAAAYGVPV-----AKHG 145 (374)
T ss_dssp CCCHHHHHHHHHHHHTTCCC-----------CCSSSCCEEE--EECC---CCBCCHHHHHHHHHHHTTCCE-----EEEE
T ss_pred CCCHHHHHHHHHHHHHhCCccccccccccCccccCCCeeEE--eCCCCCCCCccchHHHHHHHHHhCCCCE-----EEEC
Confidence 358999988876542 11 222 232223 4444443332 34444578899999 6999
Q ss_pred Ccc-cCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009610 427 NTI-KAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI 477 (531)
Q Consensus 427 NT~-~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTECv 477 (531)
|-- ++.+| ..|+.++. |+.++++.++|-+|+
T Consensus 146 nR~~ss~~G---------------saDvLEaL-----Gv~~~~~~e~~~~~l 177 (374)
T 1vqu_A 146 NRSASSLTG---------------SADVLEAL-----GVNLGASPEKVQAAL 177 (374)
T ss_dssp ECC--CTTC---------------HHHHHHHT-----TCCTTCCHHHHHHHH
T ss_pred CCCCCCCCC---------------HHHHHHhC-----CCCCCCCHHHHHHHH
Confidence 944 44566 23455554 678889999998886
No 49
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6
Probab=22.78 E-value=2e+02 Score=28.36 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=55.9
Q ss_pred HHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHH
Q 009610 373 VKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVRAFFD 452 (531)
Q Consensus 373 v~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~ 452 (531)
-+|+++|+-.+.|.=+-++. ...+.-|.+|+++.++||.|. .||.+-. .+..-.-+.+.+||....+
T Consensus 89 ~rll~lL~~~~v~aTfFv~g-----~~~~~~p~~v~~i~~~GhEIg-----~H~~~H~---~~~~ls~~~~~~ei~~~~~ 155 (321)
T 3s6o_A 89 WRILREFDKRGLPLTVFGVG-----MAIERHPELARAFVELGHEIA-----CHGWRWI---HYQDMTPEREAEHMRLGME 155 (321)
T ss_dssp HHHHHHHHHHTCCCEEEECH-----HHHHHCHHHHHHHHHTTCEEE-----ECCSSCS---CCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEH-----HHhhhCHHHHHHHHHcCCEEe-----eCCcccc---ccccCCHHHHHHHHHHHHH
Confidence 34444444445655444432 334678999999999999987 5887753 3445678899999999999
Q ss_pred HHHhh-CCcCccce
Q 009610 453 VHEQE-GSHPGGIH 465 (531)
Q Consensus 453 vh~~~-Gs~~GGvH 465 (531)
++++. |..+=|.-
T Consensus 156 ~l~~~~G~~p~g~r 169 (321)
T 3s6o_A 156 AIERVTGVRPLGWY 169 (321)
T ss_dssp HHHHHHSCCCCEEC
T ss_pred HHHHHhCCCcccEE
Confidence 99874 66666544
No 50
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=22.75 E-value=71 Score=27.33 Aligned_cols=31 Identities=13% Similarity=-0.029 Sum_probs=24.5
Q ss_pred hhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 009610 396 AENMRVKLPHLIRAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 396 a~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 426 (531)
.+.+.+.|-.+|+.+++.|.+|+|++=|.-+
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~vil~~~~p~~ 126 (204)
T 3p94_A 96 LENVFGNLVSMAELAKANHIKVIFCSVLPAY 126 (204)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCCCCS
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3456677888999999999999999865443
No 51
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=22.60 E-value=1.2e+02 Score=31.46 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=34.1
Q ss_pred ceeee----CCCCCHHHHHHHHHHhCCC------CCCCcEEEEeccChhHHHhhChHHHHHHHH--CCCceEEEcCCCCC
Q 009610 359 LGIKV----SDKMDPNELVKLVEIFNPH------NKAGRITIICRMGAENMRVKLPHLIRAVRR--EGQIVTWVCDPMHG 426 (531)
Q Consensus 359 IGvKv----GP~~~p~elv~L~~~LnP~------~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~--aG~~ViW~cDPMHG 426 (531)
-|+|+ |-..++++..++-+.++.+ ...|+++-+.-+ +..++=.+.+.+.. .... -.+.|||||
T Consensus 108 NGiK~~~~~G~~l~~~~~~~Ie~~~~~~~~~~~~~~~g~~~~~~d~----~~~Y~~~l~~~~~~~i~~~~-kivvD~~nG 182 (443)
T 3i3w_A 108 NGIKLFSSNGFKLDDALEEEVEDMIDGDFIYQPQFKFGSYKILANA----IDEYIESIYSRFAKFVNYKG-KVVVDCAHG 182 (443)
T ss_dssp EEEEEEETTSCBCCHHHHHHHHHHHTSCCCCCTTSCCCCEEECTTT----THHHHHHHHHHHTTTCCCCS-EEEEECTTS
T ss_pred CeEEEEcCCCCcCCHHHHHHHHHHHhccccccccccCccEEEChhH----HHHHHHHHHHhCchhhccCC-eEEEECCCC
Confidence 48887 5566666666666665421 245776654322 22233333333322 1123 456799999
Q ss_pred Cc
Q 009610 427 NT 428 (531)
Q Consensus 427 NT 428 (531)
-+
T Consensus 183 ~~ 184 (443)
T 3i3w_A 183 AA 184 (443)
T ss_dssp TT
T ss_pred hH
Confidence 65
No 52
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=22.51 E-value=1.9e+02 Score=28.36 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHHHHHHH
Q 009610 369 PNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAILAEVR 448 (531)
Q Consensus 369 p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 448 (531)
-..|+++++.. +.| .|+.. .....+.-|.+|+++.++||.|. .||.+-. .+....-+++.+||.
T Consensus 76 ~~rlL~lL~~~---~v~--aTfFv---~g~~~~~~p~~v~~i~~~GhEIg-----~H~~~H~---~~~~~s~~~~~~ei~ 139 (326)
T 3qbu_A 76 IPRLLKLFKKY---HLP--ATWFV---PGHSIETFPEQMKMIVDAGHEVG-----AHGYSHE---NPIAMSTKQEEDVLL 139 (326)
T ss_dssp HHHHHHHHHHT---TCC--CEEEC---CHHHHHHCHHHHHHHHTTTCEEE-----BCCSSCC---CGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCC--EEEEE---EhHHhhhCHHHHHHHHHcCCEEE-----eCCCCCc---ChhhCCHHHHHHHHH
Confidence 35555555554 555 45543 12333568999999999999876 6886643 355667899999999
Q ss_pred HHHHHHHh-hCCcC
Q 009610 449 AFFDVHEQ-EGSHP 461 (531)
Q Consensus 449 ~ff~vh~~-~Gs~~ 461 (531)
...+++++ .|..+
T Consensus 140 ~~~~~l~~~~G~~p 153 (326)
T 3qbu_A 140 KSVELIKDLTGKAP 153 (326)
T ss_dssp HHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHCCCC
Confidence 99999987 45544
No 53
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=22.39 E-value=28 Score=35.20 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHh-------CCCCCCCcEEEEeccChhHHHh--hChHHHHHHHHCCCceEEEcCCCCCCcccC-CCCc
Q 009610 366 KMDPNELVKLVEIF-------NPHNKAGRITIICRMGAENMRV--KLPHLIRAVRREGQIVTWVCDPMHGNTIKA-PCGL 435 (531)
Q Consensus 366 ~~~p~elv~L~~~L-------nP~~~PGRLTLI~RmGa~~v~~--~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~-~~G~ 435 (531)
.+|++|+..+.+.+ +....+ .+.=|.=.|-+.-.. .-+.+.--|.++|.+| |||||--.+ .+|-
T Consensus 52 get~eEi~g~~~am~~~~~~v~~~~~~-~~vD~~gTGGdg~~t~niSt~~a~v~Aa~G~~V-----~khG~r~~ss~~Gs 125 (346)
T 4hkm_A 52 KETIGEIAGAATVMREFSRRVEVTDRR-HMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKV-----AKHGNRSVSSKSGS 125 (346)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCCSCCT-TEEEEECC------CCCHHHHHHHHHHHTTCEE-----EEEC---------C
T ss_pred CcCHHHHHHHHHHHHHhCCCCCCCCCc-cceeecCCCCCCccccCcHHHHHHHHHhcCCCe-----eecCCCCCCCCcCH
Confidence 47899999887764 322222 344455555544321 2344444567899999 599995433 3452
Q ss_pred cccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009610 436 KTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI 477 (531)
Q Consensus 436 KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTECv 477 (531)
.|+.++. |+.++++.+++-+|+
T Consensus 126 ---------------aD~LeaL-----G~~~~ls~~~~~~~l 147 (346)
T 4hkm_A 126 ---------------ADALEAL-----GAVIELQPEQVAASL 147 (346)
T ss_dssp ---------------HHHHHTT-----TCCCCCCHHHHHHHH
T ss_pred ---------------HHHHHHc-----CCCcccCHHHHHHHH
Confidence 2344443 788899999988886
No 54
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=22.33 E-value=20 Score=37.76 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHh-------CCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc-ccCCCCccc
Q 009610 366 KMDPNELVKLVEIF-------NPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNT-IKAPCGLKT 437 (531)
Q Consensus 366 ~~~p~elv~L~~~L-------nP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT-~~~~~G~KT 437 (531)
.+|++|+..+.+.+ +....++.+.=|+=-|-+.- ..-+.+.=-|.+.|.+| |||||- .++.+| |
T Consensus 49 Get~eEiag~a~AM~~~~~~v~~~~~~~~~vD~~gTGGdG~-~iSt~~A~vvAa~Gv~V-----aKHGnRa~ss~~G--s 120 (433)
T 1brw_A 49 GMTEEETAALTMAMVQSGEMLDLSSIRGVKVDKHSTGGVGD-TTTLVLGPLVASVGVPV-----AKMSGRGLGHTGG--T 120 (433)
T ss_dssp CCCHHHHHHHHHHHHHTSCCCCCTTSCSCCEEEEECCCSSC-CHHHHHHHHHHTTTCCE-----EEEECCCBTTBCC--H
T ss_pred CCCHHHHHHHHHHHHHhCCcCCcccccCCceeeCCCCCCCc-chHHHHHHHHHhCCCcE-----EEECCCCCCCCCC--H
Confidence 47899999877553 32222233444444442211 13344444567889999 799995 334455 1
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009610 438 RPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI 477 (531)
Q Consensus 438 R~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTECv 477 (531)
.|+| ++ +=|+.++++.+++.+|+
T Consensus 121 ---aDvL----------Ea----L~Gv~i~ls~e~~~~~l 143 (433)
T 1brw_A 121 ---IDKL----------ES----VPGFHVEISKDEFIRLV 143 (433)
T ss_dssp ---HHHH----------TT----STTCCCCCCHHHHHHHH
T ss_pred ---HHHH----------HH----CcCceecCCHHHHHHHH
Confidence 2444 22 23678888998888886
No 55
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=21.65 E-value=40 Score=36.79 Aligned_cols=59 Identities=31% Similarity=0.445 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCeeEEecCCccchhhhcChhhHHH-HHHHHHHHHHHHhhcCCCCeEeeeccccCCCCCCCCcccccCC
Q 009610 120 SLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRD-TFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNG 198 (531)
Q Consensus 120 ~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~i~~-k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G 198 (531)
.|-+-|+-||. |....++++.||+ |+|+|..|--+ . .--||+ |||.+ + .+|
T Consensus 295 HLlQlL~LvAM------------EpP~s~~a~~iRdEKvKVLralrpi-~---~~~vVr-----GQY~~--g-----~~g 346 (541)
T 4e9i_A 295 HLTQILSLLTM------------EKPRSLSAEDIRDEKVQVLRQVVPA-N---PAECVL-----GQYTA--S-----ADG 346 (541)
T ss_dssp HHHHHHHHHHC------------CCCSSSSHHHHHHHHHHHHTTBCCC-C---TTSEEE-----EEEEC--C-----SSS
T ss_pred HHHHHHHHHhc------------CCCCCCCHHHHHHHHHHHHHccCCC-C---ccceEE-----ccccC--C-----CCC
Confidence 67888999988 7888899999986 99999865331 1 112444 99986 2 267
Q ss_pred eecccccCC
Q 009610 199 VKLPSYKGD 207 (531)
Q Consensus 199 ~~LPsYRGD 207 (531)
.+|.||-+
T Consensus 347 -~v~gY~~e 354 (541)
T 4e9i_A 347 -STPGYLDD 354 (541)
T ss_dssp -SSCCGGGC
T ss_pred -CCCCccCC
Confidence 89999976
No 56
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=21.27 E-value=53 Score=32.24 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=19.9
Q ss_pred cCCceeeeCCCCCHHHHHHHHHHhC
Q 009610 356 ANPLGIKVSDKMDPNELVKLVEIFN 380 (531)
Q Consensus 356 ~NPIGvKvGP~~~p~elv~L~~~Ln 380 (531)
.=||.||+.|..+.+|++++++.+.
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~ 235 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLV 235 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHH
T ss_pred cCceEEEecCCCCHHHHHHHHHHHH
Confidence 3599999999988877777776664
No 57
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=21.25 E-value=92 Score=32.32 Aligned_cols=60 Identities=22% Similarity=0.147 Sum_probs=34.8
Q ss_pred ChhHHHHHHHHHH--------HHHHHHHhhhcCCccccccccccchhhhccCchhhHHHHHHH--HHHHHHhHHHHhcCC
Q 009610 222 DPERLIRAYCQSA--------ATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAH--RVDEALGFMAAAGLT 291 (531)
Q Consensus 222 DP~Rll~aY~~Sa--------aTLn~lRa~~~gg~a~l~~~~~w~~~f~~~s~~~~~y~~l~~--~i~~al~Fm~a~G~~ 291 (531)
||.|||+++..++ .|+..|+.... .++.+......+++.++.. ....+|+.|..+|+-
T Consensus 178 DPlRiLRa~Rfaarlgf~i~~~T~~ai~~~~~------------~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL 245 (415)
T 3aql_A 178 DPVRMLRAVRFAAKLGMRISPETAEPIPRLAT------------LLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLF 245 (415)
T ss_dssp CTHHHHHHHHHHHHTTCEECHHHHTHHHHHGG------------GGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH------------hhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCCh
Confidence 8999999999886 57777764421 1111111112223333321 235689999999986
Q ss_pred CC
Q 009610 292 LD 293 (531)
Q Consensus 292 ~~ 293 (531)
..
T Consensus 246 ~~ 247 (415)
T 3aql_A 246 QP 247 (415)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 58
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=21.18 E-value=1.6e+02 Score=25.78 Aligned_cols=30 Identities=0% Similarity=-0.038 Sum_probs=24.8
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 009610 397 ENMRVKLPHLIRAVRREGQIVTWVCDPMHG 426 (531)
Q Consensus 397 ~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 426 (531)
+.+.+.|-.+|+.+++.|.+|+|+.=|.-+
T Consensus 96 ~~~~~~l~~~i~~~~~~~~~vil~~~~p~~ 125 (240)
T 3mil_A 96 PEFIDNIRQMVSLMKSYHIRPIIIGPGLVD 125 (240)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 457888999999999999999998855433
No 59
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=20.80 E-value=22 Score=38.06 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHhC----CCCC----CCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcc-cCCCCcc
Q 009610 366 KMDPNELVKLVEIFN----PHNK----AGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTI-KAPCGLK 436 (531)
Q Consensus 366 ~~~p~elv~L~~~Ln----P~~~----PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~-~~~~G~K 436 (531)
.+|++|+..+.+.+- +=.. +|.+.=|+=-|-+.-. .-+.+.=-|.+.|.+| |||||-- ++.+|
T Consensus 76 GeT~eEiag~a~AMr~~~~~v~~~~~~~~~~vD~~gTGGdG~~-iSt~~A~vvAa~Gv~V-----aKHGnRa~ss~~G-- 147 (474)
T 1uou_A 76 GMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGGVGDK-VSLVLAPALAACGCKV-----PMISGRGLGHTGG-- 147 (474)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCCCCGGGGGGBEEEEESCCTTCC-HHHHHHHHHHTTTCBE-----EEECCCCBTTBCC--
T ss_pred CCCHHHHHHHHHHHHHhCCcCCcccccCCCeeEeCCCCCCCce-eHHHHHHHHHhCCCCE-----EEECCCCCCCCCC--
Confidence 478999998886642 1112 2234444444422111 3344444577889999 7999944 44556
Q ss_pred ccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009610 437 TRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECI 477 (531)
Q Consensus 437 TR~f~~Il~Ev~~ff~vh~~~Gs~~GGvHLE~Tg~~VTECv 477 (531)
.-|+.++. -|+.++++.+++.+|+
T Consensus 148 -------------SaDvLEaL----pGv~i~ls~e~~~~~l 171 (474)
T 1uou_A 148 -------------TLDKLESI----PGFNVIQSPEQMQVLL 171 (474)
T ss_dssp -------------HHHHHTTS----TTCCCCCCHHHHHHHH
T ss_pred -------------HHHHHHhC----CCCCCCCCHHHHHHHH
Confidence 12343433 3688899999888886
No 60
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=20.68 E-value=2.7e+02 Score=24.89 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccchhHH
Q 009610 364 SDKMDPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNTIKAPCGLKTRPFDAI 443 (531)
Q Consensus 364 GP~~~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~I 443 (531)
||.-. .-+++++|+=.+.|+=.-++.. .+ +.-|.+|+.+.++||.+- .|+-+- .-+.+-.-+.+
T Consensus 14 G~~~~---~~~il~iL~~~~v~aTfFv~g~----~~-~~~~~~~~~~~~~GheIg-----~Ht~~H---~~l~~ls~~~~ 77 (195)
T 2cc0_A 14 GPSGS---TQSLLNALRQNGLRATMFNQGQ----YA-AQNPSLVRAQVDAGMWVA-----NHSYTH---PHMTQLGQAQM 77 (195)
T ss_dssp CCSTT---HHHHHHHHHHTTCCCEEEECHH----HH-HHCHHHHHHHHHTTCEEE-----ECCSSC---CCGGGSCHHHH
T ss_pred CCchh---HHHHHHHHHHcCCCEEEEecCh----hh-hhCHHHHHHHHHCCCEEE-----cCCCCc---cccccCCHHHH
Confidence 66544 4445555555677776666543 34 347999999999999775 255432 23445567899
Q ss_pred HHHHHHHHHHHHhh
Q 009610 444 LAEVRAFFDVHEQE 457 (531)
Q Consensus 444 l~Ev~~ff~vh~~~ 457 (531)
.+||....++.++.
T Consensus 78 ~~ei~~~~~~l~~~ 91 (195)
T 2cc0_A 78 DSEISRTQQAIAGA 91 (195)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 61
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=20.43 E-value=52 Score=33.63 Aligned_cols=38 Identities=3% Similarity=0.120 Sum_probs=27.7
Q ss_pred cCCceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009610 356 ANPLGIKVSDKMDPNELVKLVEIFNPHNKAGRITIICRM 394 (531)
Q Consensus 356 ~NPIGvKvGP~~~p~elv~L~~~LnP~~~PGRLTLI~Rm 394 (531)
.=||.||+.|..+.+++.++++.+.-.... =|+++.|.
T Consensus 220 ~~Pv~vKi~p~~~~~~~~~ia~~~~~aGad-gi~v~ntt 257 (367)
T 3zwt_A 220 RPAVLVKIAPDLTSQDKEDIASVVKELGID-GLIVTNTT 257 (367)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCC-EEEECCCB
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 459999999999998988888887533333 26666554
No 62
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A
Probab=20.38 E-value=3.9e+02 Score=22.58 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc-ccCCCCccccchhHHHHH
Q 009610 368 DPNELVKLVEIFNPHNKAGRITIICRMGAENMRVKLPHLIRAVRREGQIVTWVCDPMHGNT-IKAPCGLKTRPFDAILAE 446 (531)
Q Consensus 368 ~p~elv~L~~~LnP~~~PGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT-~~~~~G~KTR~f~~Il~E 446 (531)
+|+-+..+++.++ |.+...| | |... =|++.+++|..++|+..+-+... .....-+.+..+.++++-
T Consensus 130 ~~~~~~~~~~~~~----~~~~~~v---G-D~~~-----Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~ 196 (201)
T 2w43_A 130 SPKVYKYFLDSIG----AKEAFLV---S-SNAF-----DVIGAKNAGMRSIFVNRKNTIVDPIGGKPDVIVNDFKELYEW 196 (201)
T ss_dssp CHHHHHHHHHHHT----CSCCEEE---E-SCHH-----HHHHHHHTTCEEEEECSSSCCCCTTSCCCSEEESSHHHHHHH
T ss_pred CHHHHHHHHHhcC----CCcEEEE---e-CCHH-----HhHHHHHCCCEEEEECCCCCCccccCCCCCEEECCHHHHHHH
Confidence 5888999999998 7777776 3 2322 36788999999999987533211 111122445666666544
Q ss_pred H
Q 009610 447 V 447 (531)
Q Consensus 447 v 447 (531)
|
T Consensus 197 l 197 (201)
T 2w43_A 197 I 197 (201)
T ss_dssp H
T ss_pred H
Confidence 4
Done!