BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009611
(531 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B4GMG4|WDR55_DROPE WD repeat-containing protein 55 homolog OS=Drosophila persimilis
GN=GL12389 PE=3 SV=1
Length = 503
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 433 FLAEEIRVRSSEMLENDDMQRLLKTLSMGMTASYDHSHEACYSYGIQYEPPMDQTYKQDL 492
F +E+ + ++M+ ND + LL T + G +++ + Y +Q EP ++ +
Sbjct: 281 FELKEVEDQITQMITNDQKKLLLATSADGYLTTFNIAARKLY---VQSEPYEEELNCMGI 337
Query: 493 SRGSGKAVVGWLKLKA-ALRWGIF 515
RGS K VVG K K + WG F
Sbjct: 338 YRGSSKLVVGTSKGKLYSYNWGYF 361
>sp|Q294Y7|WDR55_DROPS WD repeat-containing protein 55 homolog OS=Drosophila pseudoobscura
pseudoobscura GN=GA13204 PE=3 SV=2
Length = 503
Score = 35.8 bits (81), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 433 FLAEEIRVRSSEMLENDDMQRLLKTLSMGMTASYDHSHEACYSYGIQYEPPMDQTYKQDL 492
F +E+ + ++M+ ND + LL T + G +++ + Y +Q EP ++ +
Sbjct: 281 FELKEVEDQITQMITNDQKKLLLATSADGYLTTFNIAARKLY---VQSEPYEEELNCMGI 337
Query: 493 SRGSGKAVVGWLKLKA-ALRWGIF 515
RGS K VVG K K + WG F
Sbjct: 338 YRGSSKLVVGTSKGKLYSYNWGYF 361
>sp|A2Q8R9|NPL4_ASPNC Nuclear protein localization protein 4 OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=npl4 PE=3 SV=1
Length = 654
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 31 FTGGKVEGDQGAAIHV-------VLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDN 83
F + GD+ AI V ++M D+V+ E S L V D + E
Sbjct: 398 FVTCVLSGDEEGAISVSAYQASVAAVEMVRADIVEPSAEPSVML---VQSEDDDTENKSR 454
Query: 84 WTKEHF----ESHEVKEREGKRPILTGD-LLVTLKEGFGTLGDLTFTDNSSWIRSRK 135
+ E F + V ++ +P + LLVTL GF T FTD+S I +R+
Sbjct: 455 YIPEVFYRKINEYGVSAQQNAKPSFPVEYLLVTLTHGFPTDASPLFTDSSFPIENRE 511
>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens
GN=LRP2 PE=1 SV=3
Length = 4655
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 197 KLM--KADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVE-HAKTCVLGGKLYVYY 253
KLM K V +++ + QK N++GS + E KTC + Y
Sbjct: 3142 KLMSDKRTCVDIDECTEMPFVCSQKCENVIGSYICKCAPGYLREPDGKTCRQNSNIEPY- 3200
Query: 254 ADGTQNTGVVFNNIYELRGLIDDGQFVS--LESLTHSQKISVDSLVKRAY--DNWHQVLE 309
++F+N Y LR L DG F S LE L + + D + KR Y D QV+E
Sbjct: 3201 --------LIFSNRYYLRNLTIDGYFYSLILEGLDNVVALDFDRVEKRLYWIDTQRQVIE 3252
>sp|B4N984|WDR55_DROWI WD repeat-containing protein 55 homolog OS=Drosophila willistoni
GN=GK12179 PE=3 SV=1
Length = 504
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 433 FLAEEIRVRSSEMLENDDMQRLLKTLSMGMTASYDHSHEACYSYGIQYEPPMDQTYKQDL 492
F +EI + ++M+ ND + LL T + G +++ Y +Q EP ++ +
Sbjct: 282 FELKEIEDQVTQMITNDQKKLLLATSADGYLTTFNIGARKLY---VQSEPYEEELNCMGI 338
Query: 493 SRGSGKAVVGWLKLKA-ALRWGIF 515
RG+ K VVG K + + WG F
Sbjct: 339 YRGNSKLVVGTSKGRLYSYNWGYF 362
>sp|Q89925|5057R_ASFB7 Protein MGF 505-7R OS=African swine fever virus (strain Badajoz
1971 Vero-adapted) GN=BA71R-029 PE=3 SV=1
Length = 528
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 185 LDRIAKDGALH--KKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAK- 241
L R KD K+ M+ ++ E F++I VR+ RN+L G+S +WEN E +
Sbjct: 354 LTRYVKDSTYFQVKEFMQDFSISPEKFIKIAVREK---RNVLIKGISEDIWENPAERIRN 410
Query: 242 ----TCVLGGKLYVYYADGTQNTGVVFNNIYE 269
C + Y G Q + + IY+
Sbjct: 411 LKQIVCTIK------YESGRQFLINIIHTIYQ 436
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,090,185
Number of Sequences: 539616
Number of extensions: 9314975
Number of successful extensions: 23676
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 23659
Number of HSP's gapped (non-prelim): 32
length of query: 531
length of database: 191,569,459
effective HSP length: 122
effective length of query: 409
effective length of database: 125,736,307
effective search space: 51426149563
effective search space used: 51426149563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)