BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009614
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 143
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 501 DNQ 503
Q
Sbjct: 204 SGQ 206
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + DKT + S C L +GHS+ V
Sbjct: 105 VSASD--------------DKTLKIWDVSSGKC--------------LKTLKGHSNYVFC 136
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 137 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDG 195
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 129 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 186
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 187 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 229
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 230 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 290 LQTKEIVQKLQGHTDV--VISTACH 312
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 29/184 (15%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP-SCLYFTINHLS 340
AH + + F+ DG + S DG R+W + L D P S + F+ N
Sbjct: 171 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 230
Query: 341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSW 396
L +D T L S C L + GH +E + S
Sbjct: 231 IL------AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSV 270
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKV 453
+ +++S S D V +W + + ++ H + V S A +P +N S ++ D +
Sbjct: 271 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTI 329
Query: 454 RIWE 457
++W+
Sbjct: 330 KLWK 333
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 141
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 501 DNQ 503
Q
Sbjct: 202 SGQ 204
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + DKT + S C L +GHS+ V
Sbjct: 103 VSASD--------------DKTLKIWDVSSGKC--------------LKTLKGHSNYVFC 134
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 135 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDG 193
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 127 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 184
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 185 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 227
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 228 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 288 LQTKEIVQKLQGHTDV--VISTACH 310
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 29/184 (15%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP-SCLYFTINHLS 340
AH + + F+ DG + S DG R+W + L D P S + F+ N
Sbjct: 169 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 228
Query: 341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSW 396
L +D T L S C L + GH +E + S
Sbjct: 229 IL------AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSV 268
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKV 453
+ +++S S D V +W + + ++ H + V S A +P +N S ++ D +
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTI 327
Query: 454 RIWE 457
++W+
Sbjct: 328 KLWK 331
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 501 DNQ 503
Q
Sbjct: 186 SGQ 188
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 114/260 (43%), Gaps = 49/260 (18%)
Query: 252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRV 310
LG + + PVK Y + LA H ++ ++KFS +G++LAS D +++
Sbjct: 3 LGSSATQSKPTPVKPN-------YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI 55
Query: 311 W--------KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362
W K I +L DV + S L + + DKT + S
Sbjct: 56 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD--------------DKTLKIWDVS 101
Query: 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS-KNGFLLSSSADKTVRLWQVGIDRC 421
C L +GHS+ V +++ ++ ++S S D++VR+W V +C
Sbjct: 102 SGKC--------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 422 LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RCQVVDYTDIREIVSAVCY 478
L+ +H++ V++V FN D + +S S DG RIW+ +C D VS V +
Sbjct: 148 LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 479 CPDGKGGIVGTMTGNCRFYD 498
P+GK + T+ + +D
Sbjct: 207 SPNGKYILAATLDNTLKLWD 226
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 168
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 169 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 211
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 272 LQTKEIVQKLQGHTDV--VISTACH 294
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 211
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 212 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 253
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 312
Query: 455 IWE 457
+W+
Sbjct: 313 LWK 315
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 501 DNQ 503
Q
Sbjct: 186 SGQ 188
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + DKT + S C L +GHS+ V
Sbjct: 87 VSASD--------------DKTLKIWDVSSGKC--------------LKTLKGHSNYVFC 118
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDG 177
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 168
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 169 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 211
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 272 LQTKEIVQKLQGHTDV--VISTACH 294
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 29/184 (15%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP-SCLYFTINHLS 340
AH + + F+ DG + S DG R+W + L D P S + F+ N
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 212
Query: 341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSW 396
L +D T L S C L + GH +E + S
Sbjct: 213 IL------AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSV 252
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKV 453
+ +++S S D V +W + + ++ H + V S A +P +N S ++ D +
Sbjct: 253 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTI 311
Query: 454 RIWE 457
++W+
Sbjct: 312 KLWK 315
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 501 DNQ 503
Q
Sbjct: 186 SGQ 188
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 49/260 (18%)
Query: 252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRV 310
+G + + PVK Y + LA H ++ ++KFS +G++LAS D +++
Sbjct: 3 MGSSATQSKPTPVKPN-------YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI 55
Query: 311 W--------KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362
W K I +L DV + S L + + L DV K KT
Sbjct: 56 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------- 108
Query: 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS-KNGFLLSSSADKTVRLWQVGIDRC 421
+GHS+ V +++ ++ ++S S D++VR+W V +C
Sbjct: 109 ---------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 422 LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RCQVVDYTDIREIVSAVCY 478
L+ +H++ V++V FN D + +S S DG RIW+ +C D VS V +
Sbjct: 148 LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 479 CPDGKGGIVGTMTGNCRFYD 498
P+GK + T+ + +D
Sbjct: 207 SPNGKYILAATLDNTLKLWD 226
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 168
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 169 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 211
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 272 LQTKEIVQKLQGHTDV--VISTACH 294
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 211
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 212 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 253
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 312
Query: 455 IWE 457
+W+
Sbjct: 313 LWK 315
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 124
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 501 DNQ 503
Q
Sbjct: 185 SGQ 187
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 85
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + L DV K KT +GHS+ V
Sbjct: 86 VSASDDKTLKIWDVSSGKCLKT----------------------------LKGHSNYVFC 117
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 118 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 176
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 177 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 110 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 167
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 168 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 210
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 211 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 271 LQTKEIVQKLQGHTDV--VISTACH 293
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 152 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 210
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 211 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 252
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 253 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 311
Query: 455 IWE 457
+W+
Sbjct: 312 LWK 314
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 120
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 501 DNQ 503
Q
Sbjct: 181 SGQ 183
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 81
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + DKT + S C L +GHS+ V
Sbjct: 82 VSASD--------------DKTLKIWDVSSGKC--------------LKTLKGHSNYVFC 113
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 114 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 172
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 173 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 106 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 163
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 164 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 206
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 207 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 267 LQTKEIVQKLQGHTDV--VISTACH 289
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 148 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 206
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 207 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 248
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 249 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 307
Query: 455 IWE 457
+W+
Sbjct: 308 LWK 310
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 119
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 501 DNQ 503
Q
Sbjct: 180 SGQ 182
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + DKT + S C L +GHS+ V
Sbjct: 81 VSASD--------------DKTLKIWDVSSGKC--------------LKTLKGHSNYVFC 112
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 113 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 171
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 162
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 163 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 205
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 266 LQTKEIVQKLQGHTDV--VISTACH 288
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 205
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 206 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 247
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 306
Query: 455 IWE 457
+W+
Sbjct: 307 LWK 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 119
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 501 DNQ 503
Q
Sbjct: 180 SGQ 182
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + DKT + S C L +GHS+ V
Sbjct: 81 VSASD--------------DKTLKIWDVSSGKC--------------LKTLKGHSNYVFC 112
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 113 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 171
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 162
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 163 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 205
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 266 LQTKEIVQKLQGHTDV--VISTACH 288
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 205
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 206 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 247
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 306
Query: 455 IWE 457
+W+
Sbjct: 307 LWK 309
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 136
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 501 DNQ 503
Q
Sbjct: 197 SGQ 199
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + L DV K KT +GHS+ V
Sbjct: 98 VSASDDKTLKIWDVSSGKCLKT----------------------------LKGHSNYVFC 129
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 130 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 188
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 189 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 122 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 179
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 180 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 222
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 223 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 283 LQTKEIVQKLQGHTDV--VISTACH 305
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 164 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 222
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 223 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 264
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 265 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 323
Query: 455 IWE 457
+W+
Sbjct: 324 LWK 326
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 DNQ 503
Q
Sbjct: 183 SGQ 185
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + L DV K KT +GHS+ V
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKT----------------------------LKGHSNYVFC 115
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 174
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 165
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 166 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 208
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 269 LQTKEIVQKLQGHTDV--VISTACH 291
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 24/165 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 208
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 209 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 250
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDD 441
+++S S D V +W + + ++ H + V S A +P ++
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 386 GHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP N
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 124
Query: 444 FISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502
+SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 503 Q 503
Q
Sbjct: 185 Q 185
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + L DV K KT +GHS+ V
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKT----------------------------LKGHSNYVFC 115
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 174
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 165
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 166 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 208
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 269 LQTKEIVQKLQGHTDV--VISTACH 291
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 24/165 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 208
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 209 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 250
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDD 441
+++S S D V +W + + ++ H + V S A +P ++
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 118
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 501 DNQ 503
Q
Sbjct: 179 SGQ 181
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 79
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + DKT + S C L +GHS+ V
Sbjct: 80 VSASD--------------DKTLKIWDVSSGKC--------------LKTLKGHSNYVFC 111
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 112 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 170
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 171 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 104 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 161
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 162 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 204
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 205 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 265 LQTKEIVQKLQGHTDV--VISTACH 287
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 146 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 204
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 205 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 246
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 247 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 305
Query: 455 IWE 457
+W+
Sbjct: 306 LWK 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 115
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 501 DNQ 503
Q
Sbjct: 176 SGQ 178
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 76
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + DKT + S C L +GHS+ V
Sbjct: 77 VSASD--------------DKTLKIWDVSSGKC--------------LKTLKGHSNYVFC 108
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 109 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 167
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 168 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 101 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 158
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 159 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 201
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 202 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 262 LQTKEIVQKLQGHTDV--VISTACH 284
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 143 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 201
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 202 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 243
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 244 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 302
Query: 455 IWE 457
+W+
Sbjct: 303 LWK 305
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + + VSAV + DG + + G CR +D
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 DNQ 503
Q
Sbjct: 183 SGQ 185
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LA+ D +++W K I +L DV + S L
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + L DV K KT +GHS+ V
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKT----------------------------LKGHSNYVFC 115
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V +CL+ +H++ V++V FN D + +S S DG
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 174
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V + L S ++F N
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDGS 165
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 166 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 208
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 269 LQTKEIVQKLQGHTDV--VISTACH 291
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 208
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 209 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 250
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 309
Query: 455 IWE 457
+W+
Sbjct: 310 LWK 312
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + VSAV + DG + + G CR +D
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 DNQ 503
Q
Sbjct: 183 SGQ 185
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + DKT + S C L +GHS+ V
Sbjct: 84 VSASD--------------DKTLKIWDVSSGKC--------------LKTLKGHSNYVFC 115
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V CL+ +H++ V++V FN D + +S S DG
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 174
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + + +D
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V L S ++F N
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF--NRDGS 165
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 166 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 208
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D ++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 209 YILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 269 LQTKEIVQKLQGHTDV--VISTACH 291
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 31/185 (16%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP-SCLYFTINHLS 340
AH + + F+ DG + S DG R+W + L D P S + F+ N
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 209
Query: 341 QLIP-IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLS 395
L +D D + D +K K L + GH +E + S
Sbjct: 210 ILAATLDNDLKLWDYSKG---------------------KCLKTYTGHKNEKYCIFANFS 248
Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGK 452
+ +++S S D V +W + + ++ H + V S A +P +N S ++ D
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKT 307
Query: 453 VRIWE 457
+++W+
Sbjct: 308 IKLWK 312
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
GH + D++WS + L+S+S DKT+++W V +CL+ H+NYV FNP
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
N +SGS D VRIW+V+ + + VSAV + DG + + G CR +D
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 DNQ 503
Q
Sbjct: 183 SGQ 185
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 41/229 (17%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--------KVIEHERLDGFDVQDTDPSCLY 333
H ++ ++KFS +G++LAS D +++W K I +L DV + S L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + L DV K KT +GHS+ V
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKT----------------------------LKGHSNYVFC 115
Query: 394 LSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+++ ++ ++S S D++VR+W V CL+ +H++ V++V FN D + +S S DG
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG 174
Query: 452 KVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
RIW+ +C D VS V + P+GK + T+ + +D
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 29/205 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H + F+ + SG D +VR+W V L S ++F N
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF--NRDGS 165
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
LI + S D C + + L+ + + + V + +S NG
Sbjct: 166 LI--------------VSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGK 208
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+++ D T++LW +CL+ ++ H N Y F+ + +SGS D V IW
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 458 VRRCQVVD----YTDIREIVSAVCY 478
++ ++V +TD+ ++S C+
Sbjct: 269 LQTKEIVQKLQGHTDV--VISTACH 291
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH + + F+ DG + S DG R+W + L + D +P + + +
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGK 208
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE----VLDLSWS 397
I +D T L S C L + GH +E + S +
Sbjct: 209 YIL----AATLDNTLKLWDYSKGKC--------------LKTYTGHKNEKYCIFANFSVT 250
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVR 454
+++S S D V +W + + ++ H + V S A +P +N S ++ D ++
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIK 309
Query: 455 IWE 457
+W+
Sbjct: 310 LWK 312
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 119/264 (45%), Gaps = 36/264 (13%)
Query: 264 VKKQSRELSSLYTG----------QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
+KKQ+ + LY + L H + +KFS DG+YLA+G + T +V++V
Sbjct: 34 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRV 92
Query: 314 IEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370
+ RL + DP L + + S L ++
Sbjct: 93 SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI---------RSVCFSPDGKFLATGAE 143
Query: 371 PKVFRLLE----KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF 425
++ R+ + K + QGH ++ L + +G L+S S D+TVR+W + +C
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--------REIVSAVC 477
S + VT+VA +P D Y +GS+D VR+W+ +V+ D ++ V +V
Sbjct: 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263
Query: 478 YCPDGKGGIVGTMTGNCRFYDIKD 501
+ DG+ + G++ + + +++++
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQN 287
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
NH + P +D + +L+K ++ ++ P + R ++ LH+ H+S V + +
Sbjct: 13 NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 72
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN-------------------YVTSVAFN 437
S +G L++ +KT ++++V + S ++ Y+ SV F+
Sbjct: 73 SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI-VSAVCYCPDGKGGIVGTMTGNCRF 496
P D + +G+ D +RIW++ ++V E + ++ Y P G + G+ R
Sbjct: 133 P-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 497 YDIKDNQ 503
+D++ Q
Sbjct: 192 WDLRTGQ 198
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 104/240 (43%), Gaps = 49/240 (20%)
Query: 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG 303
P +L G R VR+ ++ L+ L+ E + T+ S DG+Y+A+G
Sbjct: 175 PSGDKLVSGSGDRTVRIWDLRTGQCSLT--------LSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 304 EDGTVRVW--------KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE-KIDK 354
D VRVW + ++ E G +D+ S + FT + S ++ +D+ K+
Sbjct: 227 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV-FTRDGQS-VVSGSLDRSVKLWN 284
Query: 355 TKSLRKSSDL------TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA 407
++ SD TC V + GH VL ++ ++N ++LS S
Sbjct: 285 LQNANNKSDSKTPNSGTCEV--------------TYIGHKDFVLSVATTQNDEYILSGSK 330
Query: 408 DKTVRLW-QVGIDRCLRVFSHNNYVTSVA------FNPVDDNYFISGSIDGKVRIWEVRR 460
D+ V W + + L + H N V SVA P + N F +GS D K RIW+ ++
Sbjct: 331 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYKK 389
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 26/208 (12%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
Q H S+ + FS DGQ +AS +D TV++W + + L
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--------------NRNGQHLQTLTG 342
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
H S + + + +++ +SD V L + +LL+ GHSS V +++S
Sbjct: 343 HSSSVWGVAFSPDG----QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVRGVAFS 394
Query: 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
+G + S+S DKTV+LW + H++ V VAF+P DD S S D V++W
Sbjct: 395 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLW 453
Query: 457 EVRRCQVVD-YTDIREIVSAVCYCPDGK 483
R Q++ T V V + PDG+
Sbjct: 454 N-RNGQLLQTLTGHSSSVRGVAFSPDGQ 480
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
Q H S+ + FS DGQ +AS +D TV++W + + L
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTG 96
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
H S + + + +++ +SD V L + +LL+ GHSS V +++S
Sbjct: 97 HSSSVRGVAFSPDG----QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFS 148
Query: 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
+G + S+S DKTV+LW + H++ V VAF+P D S S D V++W
Sbjct: 149 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW 207
Query: 457 EVRRCQVVD-YTDIREIVSAVCYCPDGK 483
R Q++ T V V + PDG+
Sbjct: 208 N-RNGQLLQTLTGHSSSVRGVAFSPDGQ 234
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 26/208 (12%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
Q H S+ + FS DGQ +AS +D TV++W + + L
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTG 137
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
H S + + + +++ +SD V L + +LL+ GHSS V +++S
Sbjct: 138 HSSSVWGVAFSPDG----QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFS 189
Query: 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
+G + S+S DKTV+LW + H++ V VAF+P D S S D V++W
Sbjct: 190 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 248
Query: 457 EVRRCQVVD-YTDIREIVSAVCYCPDGK 483
R Q++ T V+ V + PDG+
Sbjct: 249 N-RNGQLLQTLTGHSSSVNGVAFRPDGQ 275
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
Q H S+ + FS DGQ +AS +D TV++W + + L
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTG 260
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
H S + + + +++ +SD V L + +LL+ GHSS V +++S
Sbjct: 261 HSSSVNGVAFRPDG----QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFS 312
Query: 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
+G + S+S DKTV+LW + H++ V VAF+P D S S D V++W
Sbjct: 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW 371
Query: 457 EVRRCQVVD-YTDIREIVSAVCYCPDGK 483
R Q++ T V V + PDG+
Sbjct: 372 N-RNGQLLQTLTGHSSSVRGVAFSPDGQ 398
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
Q H S+ + FS DGQ +AS +D TV++W + + L
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTG 424
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
H S + + + +++ +SD V L + +LL+ GHSS V +++S
Sbjct: 425 HSSSVWGVAFSPDD----QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVRGVAFS 476
Query: 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
+G + S+S DKTV+LW + H++ V VAF+P D S S D V++W
Sbjct: 477 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 535
Query: 457 EVRRCQVVD-YTDIREIVSAVCYCPDGK 483
R Q++ T V V + PDG+
Sbjct: 536 N-RNGQLLQTLTGHSSSVWGVAFSPDGQ 562
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 26/204 (12%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH S+ + FS DGQ +AS +D TV++W + + L H S
Sbjct: 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTGHSSS 59
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400
+ + + +++ +SD V L + +LL+ GHSS V +++S +G
Sbjct: 60 VWGVAFSPDG----QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVRGVAFSPDGQ 111
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
+ S+S DKTV+LW + H++ V VAF+P D S S D V++W R
Sbjct: 112 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RN 169
Query: 461 CQVVD-YTDIREIVSAVCYCPDGK 483
Q++ T V V + PDG+
Sbjct: 170 GQLLQTLTGHSSSVWGVAFSPDGQ 193
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
K + + HSS V +++S +G + S+S DKTV+LW + H++ V VAF+
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 66
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK 483
P D S S D V++W R Q++ T V V + PDG+
Sbjct: 67 P-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 111
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 23/138 (16%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
Q H S+ + FS DGQ +AS +D TV++W + + L
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--------------NRNGQLLQTLTG 506
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
H S + + + +++ +SD V L + +LL+ GHSS V +++S
Sbjct: 507 HSSSVRGVAFSPDG----QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFS 558
Query: 398 KNG-FLLSSSADKTVRLW 414
+G + S+S+DKTV+LW
Sbjct: 559 PDGQTIASASSDKTVKLW 576
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
Q H S+ + FS DGQ +AS D TV++W
Sbjct: 543 QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 21/226 (9%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H I+++K++ DG ++ S + +W VI + F++++T S + NH S
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE-NH-SGD 205
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPK----VFRLLEK-PLHEFQGHSSEVLDLSWS 397
+ VD E +D K V+ PK V+++ EK P + GH + L ++
Sbjct: 206 GSLGVDVEWVDDDK---------FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 398 -KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
N LLS+S D T+R+W G F H+ + S ++ V D+ IS S+DG VR+
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW--VGDDKVISCSMDGSVRL 314
Query: 456 WEVRRCQVVDYTDIREI-VSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
W +++ ++ + + + + A DG+ V M G YD+K
Sbjct: 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311
+ + H G I ++F+ + L S +DGT+R+W
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329
E+ + Y + F H + ++ + DG +AS D TVRVW V E
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 330 SCLYF----TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385
C+ + + + +S+ + K L S D T + L
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MTLV 335
Query: 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443
GH + V + + G F+LS + DKT+R+W RC++ +H ++VTS+ F+ Y
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-Y 394
Query: 444 FISGSIDGKVRIWEVR 459
++GS+D V++WE R
Sbjct: 395 VVTGSVDQTVKVWECR 410
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 384 FQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
+GH+ V D+S+ +G LL+S SAD T++LW C+R H++ V+SV+ P D
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 442 NYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGN 493
+ +S S D +++WEV+ V +T RE V V P+ G ++ + + +
Sbjct: 206 -HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSND 255
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW--KVIEHER-LDGF--DVQDTDPSCLYFTI 336
H + + F + S ED T++VW + + ER L G VQD +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD-------ISF 158
Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
+H +L+ S+D+T + + F + + +H GH V +S
Sbjct: 159 DHSGKLLA--------------SCSADMTIKLWDFQGFECI-RTMH---GHDHNVSSVSI 200
Query: 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR 454
NG ++S+S DKT+++W+V C++ F+ H +V V N D S S D VR
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVR 259
Query: 455 IWEV--RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN 493
+W V + C+ + + R +V + + P+ + TG+
Sbjct: 260 VWVVATKECK-AELREHRHVVECISWAPESSYSSISEATGS 299
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV- 458
FLLS S DKT+++W V CL H+N+V V F+ + +S + D +R+W+
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYK 368
Query: 459 -RRC 461
+RC
Sbjct: 369 NKRC 372
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
++ F+ +GQ +A GG D ++ + DG ++ + + Q +P
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYASSCQYVP-- 167
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWS--KNGFLL 403
D+E T+ + S D TCV+ + + EF GH+++VL LS + +
Sbjct: 168 -DQE----TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222
Query: 404 SSSADKTVRLWQVGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-- 459
S S D TVRLW + I R +R + H + SV F P D F +GS DG R++++R
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTG 281
Query: 460 -RCQVVDYTDIRE-----IVSAVCYCPDGKGGIVGTMTGNCRFYD 498
+ QV + R IV++V + G+ G G+C +D
Sbjct: 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 402 LLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
L++ S D+T LW V + + +F H V S++ N ++ N FISGS D VR+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 456 WEVRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506
W++R V Y +++V + PDG+ G+ G CR +D++ Q
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 259 VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318
VR+ ++ SR + + + HEG I ++KF DGQ +G +DGT R++ + +
Sbjct: 230 VRLWDLRITSRAV------RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 319 LDGFD 323
L ++
Sbjct: 284 LQVYN 288
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319
+HEG I + S DG L +G D +++W H ++
Sbjct: 342 SHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKI 379
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 421 CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYC 479
C + H+ V S+ + P + N+ +S S DG++ +W Q + V +
Sbjct: 59 CRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 480 PDGKGGIVGTMTGNCRFYDI 499
P+G+ G + C +++
Sbjct: 118 PNGQSVACGGLDSACSIFNL 137
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 376 LLEKPLHEFQGHSSEVLDLSWSKNG--------------FLLSSSADKTVRLWQVGIDRC 421
L + H + H V++ +++ NG F LSS AD+ + + R
Sbjct: 96 LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM---PVSRV 152
Query: 422 LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464
L H Y +S + P + I+GS D +W+V Q +
Sbjct: 153 LT--GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 30/174 (17%)
Query: 345 IDVDKEKIDKTKSLRKSS----DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS-KN 399
+D D EK K + S DL C QGHS +V L W+ +
Sbjct: 33 LDTDVEKYSKAQGRTAVSFNPTDLVCC--------------RTLQGHSGKVYSLDWTPEK 78
Query: 400 GFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
+++S+S D + +W + H +V AF P + G +D I+ +
Sbjct: 79 NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNL 137
Query: 459 RRCQVVD--------YTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDNQ 503
D T + S+ Y PD + ++ G+ C +D+ Q
Sbjct: 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 53/251 (21%)
Query: 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
G L+ D ++ G R +++ K + E + TG H GS+L +++ D +
Sbjct: 135 GVYCLQYDDQKIVSGLRDNTIKIW--DKNTLECKRILTG-----HTGSVLCLQY--DERV 185
Query: 299 LASGGEDGTVRVWKVIEHERLD--------------------------GFDVQD----TD 328
+ +G D TVRVW V E L+ V D TD
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
+ + H + + +D D + I + S D T V + GH
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYI-----VSASGDRTIKVWNTSTCEFVRT----LNGHK 296
Query: 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISG 447
+ L + ++ ++S S+D T+RLW + CLRV H V + F D+ +SG
Sbjct: 297 RGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSG 352
Query: 448 SIDGKVRIWEV 458
+ DGK+++W++
Sbjct: 353 AYDGKIKVWDL 363
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354
D Q + SG D T+++W E C H ++ + D+ I
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLE-------------CKRILTGHTGSVLCLQYDERVI-- 186
Query: 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLW 414
+ SSD T V +L +H H VL L ++ NG +++ S D+++ +W
Sbjct: 187 ---ITGSSDSTVRVWDVNTGEMLNTLIH----HCEAVLHLRFN-NGMMVTCSKDRSIAVW 238
Query: 415 QVG--IDRCLR--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464
+ D LR + H V V F DD Y +S S D +++W C+ V
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFV 289
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
+ T + H I M + D + L S +DG + +W ++ ++ +
Sbjct: 56 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 115
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
PS Y L + I K + + R E G
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 152
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
H+ + + + +++SS D T LW + + H V S++ P D F+
Sbjct: 153 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 211
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
SG+ D ++W+VR C+ +T ++A+C+ P+G G+ CR +D++ +Q
Sbjct: 212 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 270
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H G ++++ + D + SG D + ++W V E F ++D + + F N
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN----- 248
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401
S D TC + + + L H+ + +S+SK+G
Sbjct: 249 -----------GNAFATGSDDATCRLFDLRADQELMTYSHD--NIICGITSVSFSKSGRL 295
Query: 402 LLSSSADKTVRLW-QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWE 457
LL+ D +W + DR + H+N V+ + DD + +GS D ++IW
Sbjct: 296 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV--TDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
+ T + H I M + D + L S +DG + +W ++ ++ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
PS Y L + I K + + R E G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
H+ + + + +++SS D T LW + + H V S++ P D F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
SG+ D ++W+VR C+ +T ++A+C+ P+G G+ CR +D++ +Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H G ++++ + D + SG D + ++W V E F ++D + + F N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN----- 237
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401
S D TC + + + L H+ + +S+SK+G
Sbjct: 238 -----------GNAFATGSDDATCRLFDLRADQELMTYSHD--NIICGITSVSFSKSGRL 284
Query: 402 LLSSSADKTVRLW-QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWE 457
LL+ D +W + DR + H+N V+ + DD + +GS D ++IW
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV--TDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
+ T + H I M + D + L S +DG + +W ++ ++ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
PS Y L + I K + + R E G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
H+ + + + +++SS D T LW + + H V S++ P D F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
SG+ D ++W+VR C+ +T ++A+C+ P+G G+ CR +D++ +Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H G ++++ + D + SG D + ++W V E F ++D + + F N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN----- 237
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401
S D TC + + + L H+ + +S+SK+G
Sbjct: 238 -----------GNAFATGSDDATCRLFDLRADQELMTYSHD--NIICGITSVSFSKSGRL 284
Query: 402 LLSSSADKTVRLW-QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWE 457
LL+ D +W + DR + H+N V+ + DD + +GS D ++IW
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV--TDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
+ T + H I M + D + L S +DG + +W ++ ++ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
PS Y L + I K + + R E G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
H+ + + + +++SS D T LW + + H V S++ P D F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
SG+ D ++W+VR C+ +T ++A+C+ P+G G+ CR +D++ +Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H G ++++ + D + SG D + ++W V E F ++D + + F N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN----- 237
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401
S D TC + + + L H+ + +S+SK+G
Sbjct: 238 -----------GNAFATGSDDATCRLFDLRADQELMTYSHD--NIICGITSVSFSKSGRL 284
Query: 402 LLSSSADKTVRLW-QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWE 457
LL+ D +W + DR + H+N V+ + DD + +GS D ++IW
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV--TDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
+ T + H I M + D + L S +DG + +W ++ ++ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
PS Y L + I K + + R E G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
H+ + + + +++SS D T LW + + H V S++ P D F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
SG+ D ++W+VR C+ +T ++A+C+ P+G G+ CR +D++ +Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H G ++++ + D + SG D + ++W V E F ++D + + F N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN----- 237
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401
S D TC + + + L H+ + +S+SK+G
Sbjct: 238 -----------GNAFATGSDDATCRLFDLRADQELMTYSHD--NIICGITSVSFSKSGRL 284
Query: 402 LLSSSADKTVRLW-QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWE 457
LL+ D +W + DR + H+N V+ + DD + +GS D ++IW
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV--TDDGMAVATGSWDSFLKIWN 340
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 99/257 (38%), Gaps = 66/257 (25%)
Query: 267 QSRELSSLYTGQ---EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323
S L +L GQ +FL H +L++ FS D + + SGG D +RVW V
Sbjct: 89 HSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV---------- 138
Query: 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD-LTCVVLPPKVFRLLEKPLH 382
K + T S +D ++CV P L+ P+
Sbjct: 139 -------------------------KGECMHTLSRGAHTDWVSCVRFSPS----LDAPV- 168
Query: 383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVDD 441
++S D V++W + R + + H NYVTSV +P D
Sbjct: 169 -------------------IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DG 208
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501
+ S DG R+W++ + + + ++ +C+ P+ T G R +D+++
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKG-IRIFDLEN 267
Query: 502 NQLYQQNQICLQGKKKL 518
+ + QG KK+
Sbjct: 268 KDIIVELAPEHQGSKKI 284
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFSHNNYVTSVAFN 437
P +GHS+ V D++ S NG F +S+S D ++RLW + +C + H V SVAF+
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 438 PVDDNYFISGSIDGKVRIWEVR 459
P D+ +SG D +R+W V+
Sbjct: 119 P-DNRQIVSGGRDNALRVWNVK 139
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS--LDGQ 297
S P + ++ G R +RV VK + + +L G AH + ++FS LD
Sbjct: 114 SVAFSPDNRQIVSGGRDNALRVWNVKGEC--MHTLSRG----AHTDWVSCVRFSPSLDAP 167
Query: 298 YLASGGEDGTVRVW 311
+ SGG D V+VW
Sbjct: 168 VIVSGGWDNLVKVW 181
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
KK + LS L H ++ FS DGQ +AS G D T++V+K E+L
Sbjct: 600 KKTIKNLSRLVVR----PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 655
Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
+ + C F+ + S + DK K K ++ K +H +
Sbjct: 656 HEDEVLCCAFSSDD-SYIATCSADK----KVKIWDSATG---------------KLVHTY 695
Query: 385 QGHSSEV--LDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVD 440
HS +V + N LL++ S D ++LW + C +F H N V F+P D
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 754
Query: 441 DNYFISGSIDGKVRIWEVR 459
D S S DG +R+W+VR
Sbjct: 755 DELLASCSADGTLRLWDVR 773
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 37/189 (19%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV-QDTDPSCLYFTINHLS 340
AH+ ++ + D + L S DGTV+VW VI F Q T SC
Sbjct: 1042 AHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSC--------- 1091
Query: 341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
I D K T S+D T + F LL PLHE +GH+ V ++S +G
Sbjct: 1092 ---AISSDATKFSST-----SADKTAKIWS---FDLLS-PLHELKGHNGCVRCSAFSLDG 1139
Query: 401 FLLSSSADK-TVRLWQVGIDRCLR----------VFSHNNYVTSVAFNPVDDNYFISGSI 449
LL++ D +R+W V + L +H +VT V F+P D +S
Sbjct: 1140 ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG- 1197
Query: 450 DGKVRIWEV 458
G ++ W V
Sbjct: 1198 -GYLKWWNV 1205
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 37/216 (17%)
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS 340
+ H+ ++ ++F+ DG+ L S ED ++VW + D +Q + F + S
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---WQTGDYVFLQAHQETVKDFRLLQDS 1056
Query: 341 QLIPIDVDKE-KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399
+L+ D K+ + R D TC H VL + S +
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERDFTC--------------------HQGTVLSCAISSD 1096
Query: 400 GFLLSS-SADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
SS SADKT ++W + L HN V AF+ +D +G +G++RIW
Sbjct: 1097 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWN 1155
Query: 458 VRRCQVVDYTDIREI----------VSAVCYCPDGK 483
V Q++ + V+ VC+ PD K
Sbjct: 1156 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSK 1191
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339
H S+ +FS D + LAS DGT+R+W V +V+ +F L
Sbjct: 739 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR------FF----L 788
Query: 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL------LEKPLHEFQGHSSEVLD 393
S P + D E I K S D V KV L +H GH S +
Sbjct: 789 SSEDPPE-DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH--TGHHSTIQY 845
Query: 394 LSWSKNGFL-LSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSI 449
+S L + + + V LW ID L+V H ++V V F+P D + F++ S
Sbjct: 846 CDFSPYDHLAVIALSQYCVELW--NIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASD 902
Query: 450 DGKVRIWEVRR 460
D +R+WE ++
Sbjct: 903 DQTIRVWETKK 913
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 28/199 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW---KVIEHERL---DGFDVQDTDPSCLYFT 335
H + + FS DG + +D T+RVW KV ++ + DV + +
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-----------FRLLEKPLHEF 384
++++ L I +ID + ++C L P + +++E P +
Sbjct: 940 VDNIRGLQLIAGKTGQIDYLPE----AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995
Query: 385 ----QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV 439
GH V + ++ +G L+SSS D +++W + + +H V F +
Sbjct: 996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKD--FRLL 1053
Query: 440 DDNYFISGSIDGKVRIWEV 458
D+ +S S DG V++W V
Sbjct: 1054 QDSRLLSWSFDGTVKVWNV 1072
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN 442
Q H V D ++ LLS S D TV++W V R R F+ H V S A + D
Sbjct: 1040 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DAT 1098
Query: 443 YFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501
F S S D +IW + + V + DG G G R +++ D
Sbjct: 1099 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158
Query: 502 NQL 504
QL
Sbjct: 1159 GQL 1161
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
E H G + FSLDG LA+G ++G +R+W V
Sbjct: 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311
++F H+G++L+ S D +S D T ++W
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
KK + LS L H ++ FS DGQ +AS G D T++V+K E+L
Sbjct: 607 KKTIKNLSRLVVR----PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 662
Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
+ + C F+ + S + DK K K ++ K +H +
Sbjct: 663 HEDEVLCCAFSSDD-SYIATCSADK----KVKIWDSATG---------------KLVHTY 702
Query: 385 QGHSSEV--LDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVD 440
HS +V + N LL++ S D ++LW + C +F H N V F+P D
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 761
Query: 441 DNYFISGSIDGKVRIWEVR 459
D S S DG +R+W+VR
Sbjct: 762 DELLASCSADGTLRLWDVR 780
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 79/189 (41%), Gaps = 37/189 (19%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV-QDTDPSCLYFTINHLS 340
AH+ ++ + D + L S DGTV+VW VI F Q T SC +
Sbjct: 1049 AHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS----- 1102
Query: 341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
D TK S+D T + F LL PLHE +GH+ V ++S +G
Sbjct: 1103 ------------DATKFSSTSADKTAKIWS---FDLLS-PLHELKGHNGCVRCSAFSLDG 1146
Query: 401 FLLSSSADK-TVRLWQVGIDRCLR----------VFSHNNYVTSVAFNPVDDNYFISGSI 449
LL++ D +R+W V + L +H +VT V F+P D +S
Sbjct: 1147 ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG- 1204
Query: 450 DGKVRIWEV 458
G ++ W V
Sbjct: 1205 -GYLKWWNV 1212
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 37/216 (17%)
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS 340
+ H+ ++ ++F+ DG+ L S ED ++VW + D +Q + F + S
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---WQTGDYVFLQAHQETVKDFRLLQDS 1063
Query: 341 QLIPIDVDKE-KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399
+L+ D K+ + R D TC H VL + S +
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERDFTC--------------------HQGTVLSCAISSD 1103
Query: 400 GFLLSS-SADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
SS SADKT ++W + L HN V AF+ +D +G +G++RIW
Sbjct: 1104 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWN 1162
Query: 458 VRRCQVVDYTDIREI----------VSAVCYCPDGK 483
V Q++ + V+ VC+ PD K
Sbjct: 1163 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSK 1198
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339
H S+ +FS D + LAS DGT+R+W V +V+ +F L
Sbjct: 746 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR------FF----L 795
Query: 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL------LEKPLHEFQGHSSEVLD 393
S P + D E I K S D V KV L +H GH S +
Sbjct: 796 SSEDPPE-DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH--TGHHSTIQY 852
Query: 394 LSWSKNGFL-LSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSI 449
+S L + + + V LW ID L+V H ++V V F+P D + F++ S
Sbjct: 853 CDFSPYDHLAVIALSQYCVELW--NIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASD 909
Query: 450 DGKVRIWEVRR 460
D +R+WE ++
Sbjct: 910 DQTIRVWETKK 920
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 28/199 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW---KVIEHERL---DGFDVQDTDPSCLYFT 335
H + + FS DG + +D T+RVW KV ++ + DV + +
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-----------FRLLEKPLHEF 384
++++ L I +ID + ++C L P + +++E P +
Sbjct: 947 VDNIRGLQLIAGKTGQIDYLPE----AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 1002
Query: 385 ----QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV 439
GH V + ++ +G L+SSS D +++W + + +H V F +
Sbjct: 1003 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKD--FRLL 1060
Query: 440 DDNYFISGSIDGKVRIWEV 458
D+ +S S DG V++W V
Sbjct: 1061 QDSRLLSWSFDGTVKVWNV 1079
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN 442
Q H V D ++ LLS S D TV++W V R R F+ H V S A + D
Sbjct: 1047 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DAT 1105
Query: 443 YFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501
F S S D +IW + + V + DG G G R +++ D
Sbjct: 1106 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1165
Query: 502 NQL 504
QL
Sbjct: 1166 GQL 1168
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
E H G + FSLDG LA+G ++G +R+W V
Sbjct: 1128 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311
++F H+G++L+ S D +S D T ++W
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 111/275 (40%), Gaps = 43/275 (15%)
Query: 255 RMRRVRVHPVKKQSRELSS--LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
++ V +H V ++ L + T + H +L M + D + + S +DG V VW
Sbjct: 33 KLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92
Query: 313 VIEHERLDGFDVQDT-DPSCLYFT---------INHLSQLIPIDVDKEKIDKTKSLRKSS 362
+ + T +C Y +++ + P+ DK + K +KS
Sbjct: 93 SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK--KKSV 150
Query: 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRC 421
+ H++ + S++ + +L++S D T LW V +
Sbjct: 151 AM----------------------HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188
Query: 422 LRVF-SHNNYVTSVAFNPVDD-NYFISGSIDGKVRIWEVRRCQVVDYTDIREI-VSAVCY 478
L+ F H V + P + N F+SG D K +W++R Q V + E V++V Y
Sbjct: 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248
Query: 479 CPDGKGGIVGTMTGNCRFYDIKDNQ---LYQQNQI 510
P G G+ CR YD++ ++ +Y + I
Sbjct: 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 21/182 (11%)
Query: 278 QEFLAHEGSILTMKF--SLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
Q F H +L + S G SGG D VW + + + F+ ++D
Sbjct: 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD------- 242
Query: 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395
+N + D D D TC + + R + E + +D S
Sbjct: 243 VNSVRYYPSGDAFASGSD---------DATCRLYDLRADREVAIYSKESIIFGASSVDFS 293
Query: 396 WSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
S L + D T+ +W V R +F H N V+++ +P D F SGS D +R
Sbjct: 294 LSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLR 351
Query: 455 IW 456
+W
Sbjct: 352 VW 353
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 95/251 (37%), Gaps = 78/251 (31%)
Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339
H ++ M L + + SG D T+RVW + CL+ + H+
Sbjct: 195 LYGHTSTVRCMH--LHEKRVVSGSRDATLRVWDI-------------ETGQCLHVLMGHV 239
Query: 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS-- 397
+ + + D ++ + + D V P+ E LH QGH++ V L +
Sbjct: 240 AAVRCVQYDGRRV-----VSGAYDFMVKVWDPET----ETCLHTLQGHTNRVYSLQFDGI 290
Query: 398 -------------------------------------KNGFLLSSSADKTVRLWQVGIDR 420
K+ L+S +AD TV++W + +
Sbjct: 291 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 350
Query: 421 CLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV 476
CL+ H + VT + FN N+ I+ S DG V++W+++ + IR +V+
Sbjct: 351 CLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEF-----IRNLVTLE 402
Query: 477 CYCPDGKGGIV 487
G GG+V
Sbjct: 403 ---SGGSGGVV 410
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 34/241 (14%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
+ + H G + + + + + SG D T++VW E C++
Sbjct: 153 RTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNAETGE-------------CIHTLYG 197
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
H S + + + ++++ + S D T V + + LH GH + V + +
Sbjct: 198 HTSTVRCMHLHEKRV-----VSGSRDATLRVWDIET----GQCLHVLMGHVAAVRCVQYD 248
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
++S + D V++W + CL H N V S+ F+ + + +SGS+D +R+W
Sbjct: 249 GR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVW 304
Query: 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516
+V + + +++ D + G + +DIK Q Q LQG
Sbjct: 305 DVETGNCIHTLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQT----LQGPN 359
Query: 517 K 517
K
Sbjct: 360 K 360
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 259 VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318
+R H + R L + + H+ ++T G + SG +D T++VW + +
Sbjct: 94 IRQHRIDTNWRR-GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK- 150
Query: 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378
CL + H + + I + S+D T V +
Sbjct: 151 ------------CLRTLVGHTGGVWSSQMRDNII-----ISGSTDRTLKVWNAET----G 189
Query: 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438
+ +H GH+S V + + ++S S D T+R+W + +CL V +V +V
Sbjct: 190 ECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLM--GHVAAVRCVQ 246
Query: 439 VDDNYFISGSIDGKVRIWE 457
D +SG+ D V++W+
Sbjct: 247 YDGRRVVSGAYDFMVKVWD 265
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443
+GH V+ ++S S D T+++W +CLR + V + + DN
Sbjct: 114 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--GHTGGVWSSQMRDNI 171
Query: 444 FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
ISGS D +++W + + +T + C K + G+ R +DI+ Q
Sbjct: 172 IISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 230
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 48/220 (21%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
+YTGQ FL ++ + + + L GG+D + + F DP LY
Sbjct: 55 VYTGQGFLN------SVCYDSEKELLLFGGKDTXIN--------GVPLFATSGEDP--LY 98
Query: 334 FTINHLSQLIPID-----VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
I H + + V DKT + K L ++ Q H+
Sbjct: 99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSL----------------VYNLQAHN 142
Query: 389 SEVLD---LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNY 443
+ V D +S+S+N FL ++SADKT++LWQ D+ ++ FS HN+ V +A VDD +
Sbjct: 143 ASVWDAKVVSFSENKFL-TASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAV--VDDGH 197
Query: 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG 482
FIS S DG +++ + V+ Y V + P+G
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG 237
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 381 LHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLW 414
L ++GH S V + NG ++S D+TVR+W
Sbjct: 218 LRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIW 251
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
+ ++K+S DG +L+ G +G V ++ V +L CL + + LS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSG---- 192
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS 406
++ ++ R+ + QGHSSEV L+W +G L+S
Sbjct: 193 ------SRSGAIHHHD-----------VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG 235
Query: 407 A-DKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRC 461
D V++W I + + +HN V +VA+ P N + G++D ++ W
Sbjct: 236 GNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Query: 462 QVVDYTDIREIVSAVCYCPDGK 483
V+ D V+++ + P K
Sbjct: 295 ARVNTVDAGSQVTSLIWSPHSK 316
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307
H L+ G R + H V+ + ++ +L H + + + DG LASGG D
Sbjct: 187 HVLSSGSRSGAIHHHDVRIANHQIGTLQ------GHSSEVCGLAWRSDGLQLASGGNDNV 240
Query: 308 VRVW 311
V++W
Sbjct: 241 VQIW 244
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI---EHERLDGFDVQD 326
+L++ + + F+ H +L++ FSLD + + S D T+++W + ++ +G +
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQ 385
SC+ F+ N L I + S D T KV+ L L
Sbjct: 518 DWVSCVRFSPNTLQPTI--------------VSASWDKTV-----KVWNLSNCKLRSTLA 558
Query: 386 GHSSEVLDLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444
GH+ V ++ S +G L +S D V LW + + L N+ + ++ F+P + Y+
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP--NRYW 616
Query: 445 ISGSIDGKVRIWEVRRCQVVD 465
+ + + ++IW++ +V+
Sbjct: 617 LCAATEHGIKIWDLESKSIVE 637
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL------RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
++S+S DK++ LW++ D R+ H+++V V + D + +SGS DG++R
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELR 455
Query: 455 IWEV 458
+W++
Sbjct: 456 LWDL 459
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
T Q F+ H+ ++++ + SG D T++VW + CL
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
+ H +SQ+ + +K D + +D F++ +F GH+S +
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
L+ S +G L++S+ D + LW + + + S + V S+AF+P + Y+++ +
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
++++ + +VD D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
P+ F+GHS V D + + +G + LS+S DKT+RLW V + F H + V SV +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
+ ISGS D +++W ++ + + VS V P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAF 436
+GH+ V L+ S LLS+S DKT+ W++ D +R F ++++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 437 NPVDDNYFISGSIDGKVRIWEV 458
D Y +S S D +R+W+V
Sbjct: 73 LTADGAYALSASWDKTLRLWDV 94
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314
A E +++ +S DGQ L +G D +RVW+V+
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
T Q F+ H+ ++++ + SG D T++VW + CL
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
+ H +SQ+ + +K D + +D F++ +F GH+S +
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
L+ S +G L++S+ D + LW + + + S + V S+AF+P + Y+++ +
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
++++ + +VD D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
P+ F+GHS V D + + +G + LS+S DKT+RLW V + F H + V SV +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
+ ISGS D +++W ++ + + VS V P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAF 436
+GH+ V L+ S LLS+S DKT+ W++ D +R F ++++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 437 NPVDDNYFISGSIDGKVRIWEV 458
D Y +S S D +R+W+V
Sbjct: 73 LTADGAYALSASWDKTLRLWDV 94
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314
A E +++ +S DGQ L +G D +RVW+V+
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
T Q F+ H+ ++++ + SG D T++VW + CL
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
+ H +SQ+ + +K D + +D F++ +F GH+S +
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
L+ S +G L++S+ D + LW + + + S + V S+AF+P + Y+++ +
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
++++ + +VD D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
P+ F+GHS V D + + +G + LS+S DKT+RLW V + F H + V SV +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
+ ISGS D +++W ++ + + VS V P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAF 436
+GH+ V L+ S LLS+S DKT+ W++ D +R F ++++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 437 NPVDDNYFISGSIDGKVRIWEV 458
D Y +S S D +R+W+V
Sbjct: 73 LTADGAYALSASWDKTLRLWDV 94
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
T Q F+ H+ ++++ + SG D T++VW + CL
Sbjct: 93 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 138
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
+ H +SQ+ + +K D + +D F++ +F GH+S +
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 194
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
L+ S +G L++S+ D + LW + + + S + V S+AF+P + Y+++ +
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 252
Query: 452 KVRIWEVRRCQVVDYTDIR 470
++++ + +VD D+R
Sbjct: 253 GIKVFSLDPQYLVD--DLR 269
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
P+ F+GHS V D + + +G + LS+S DKT+RLW V + F H + V SV +
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
+ ISGS D +++W ++ + + VS V P+ K
Sbjct: 111 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAF 436
+GH+ V L+ S LLS+S DKT+ W++ D +R F ++++
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 437 NPVDDNYFISGSIDGKVRIWEV 458
D Y +S S D +R+W+V
Sbjct: 67 LTADGAYALSASWDKTLRLWDV 88
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314
A E +++ +S DGQ L +G D +RVW+V+
Sbjct: 278 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 310
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
T Q F+ H+ ++++ + SG D T++VW + CL
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
+ H +SQ+ + +K D + +D F++ +F GH+S +
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
L+ S +G L++S+ D + LW + + + S + V S+AF+P + Y+++ +
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
++++ + +VD D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
P+ F+GHS V D + + +G + LS+S DKT+RLW V + F H + V SV +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
+ ISGS D +++W ++ + + VS V P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAF 436
+GH+ V L+ S LLS+S DKT+ W++ D +R F ++++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 437 NPVDDNYFISGSIDGKVRIWEV 458
D Y +S S D +R+W+V
Sbjct: 73 LTADGAYALSASWDKTLRLWDV 94
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314
A E +++ +S DGQ L +G D +RVW+V+
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 27/181 (14%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H ++ FS DGQ +AS G D T++V+K E+L + + C F+ +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD----- 674
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL-HEFQGHSSEV--LDLSWSKN 399
++ T S+ K K++ + L H + HS +V + S +
Sbjct: 675 -------DRFIATCSVDKKV---------KIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 400 GFLLSS-SADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
LL++ S+D ++LW + C +F H N V F+P DD S S DG +++W+
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWD 777
Query: 458 V 458
Sbjct: 778 A 778
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 294 LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353
L L S DGTV+VW +I + F + H ++ D+ D
Sbjct: 1059 LKNSRLLSWSFDGTVKVWNIITGNKEKDF-------------VCHQGTVLSCDISH---D 1102
Query: 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK-TVR 412
TK S+D T + F LL PLHE +GH+ V ++S + LL++ D +R
Sbjct: 1103 ATKFSSTSADKTAKIWS---FDLL-LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIR 1158
Query: 413 LWQVGIDRCLRV---------FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
+W V L + +H +VT + F+P D IS G ++ W V
Sbjct: 1159 IWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSP-DGKMLISAG--GYIKWWNV 1210
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 87/200 (43%), Gaps = 30/200 (15%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVW---KVIEHERL---DGFDVQDTDPSCLYFT 335
H + + FS DG + +D T+R+W KV ++ + DV + +
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP--------------KVFRLLEKPL 381
++H+ +L I+ +ID + ++C L P ++ L+ +
Sbjct: 946 VDHIRRLQLINGRTGQIDYLTE----AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRI 1001
Query: 382 HE--FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438
+ FQ H V + ++ + L+SSS D +++W +D+C+ + H V F
Sbjct: 1002 FQSRFQ-HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKD--FRL 1058
Query: 439 VDDNYFISGSIDGKVRIWEV 458
+ ++ +S S DG V++W +
Sbjct: 1059 LKNSRLLSWSFDGTVKVWNI 1078
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 122/289 (42%), Gaps = 51/289 (17%)
Query: 151 DWGKGADLVVSDND--QDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPS---- 204
DW K +V + +E L E + S +F EFL G QP P+
Sbjct: 514 DWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLNGHLLG-RQPFPNIVQL 572
Query: 205 -RQDEESRDL-----VDAKRKVKRGWL-------KKLGAMARIIDR-HGSATLKPGDHEL 250
+ E+ ++ + AK++V G L K + ++R++ R H A E
Sbjct: 573 GLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSED 632
Query: 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFL---AHEGSILTMKFSLDGQYLASGGEDGT 307
GQR+ ++ ++ TG++ L AHE +L FS D +++A+ D
Sbjct: 633 --GQRIASCGA----DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKK 686
Query: 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367
V++W + E + +D +C +FT + L+ SSD C
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATG--------------SSD--CF 730
Query: 368 VLPPKVFRLLEKPL-HEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLW 414
+ K++ L +K + GH++ V +S + LL+S SAD T++LW
Sbjct: 731 L---KLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 36/218 (16%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
Q H+ ++ ++F+ D + L S +D ++VW + +LD C++
Sbjct: 1003 QSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVW----NWQLD---------KCIFLR-G 1048
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDLSW 396
H + D + ++ L S D T KV+ ++ +F H VL
Sbjct: 1049 HQETV----KDFRLLKNSRLLSWSFDGTV-----KVWNIITGNKEKDFVCHQGTVLSCDI 1099
Query: 397 SKNGFLLSS-SADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
S + SS SADKT ++W + L HN V AF+ VD +G +G++R
Sbjct: 1100 SHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEIR 1158
Query: 455 IWEVRRCQVVDY-TDIRE--------IVSAVCYCPDGK 483
IW V +++ + E V+ +C+ PDGK
Sbjct: 1159 IWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGK 1196
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 375 RLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGI-DRCLRVFSHNNYVT 432
RL+ +P H+ V +S++G ++S ADKT+++++ ++ L + +H + V
Sbjct: 614 RLVVRP------HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVL 667
Query: 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMT 491
AF+ DD + + S+D KV+IW ++V Y + E V+ + ++ T +
Sbjct: 668 CCAFS-TDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS 726
Query: 492 GNC--RFYDIKDNQ 503
+C + +D+ +
Sbjct: 727 SDCFLKLWDLNQKE 740
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 384 FQGHSSEVLDLSWSK-NGFLLSSSADKTVRLWQ-VGIDR-CLRVFSHNNYVTSVAFNPVD 440
F GH+ +VL +++S N ++S S DKT++LW +G+ + ++ SH+ +V+ V F+P
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 441 DNYFI-SGSIDGKVRIWEVRRCQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
N I S D V++W + C++ ++ ++ V PDG G G +D
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Query: 499 IKDNQ 503
+ + +
Sbjct: 244 LNEGK 248
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
P +GHS V D+ S +G F LS S D T+RLW + R F H V SVAF+
Sbjct: 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 137
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DIREIVSAVCYCPDGKGGIV 487
D+ +SGS D +++W V YT E VS V + P+ I+
Sbjct: 138 S-DNRQIVSGSRDKTIKLWNT--LGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 40/202 (19%)
Query: 292 FSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE- 350
S DGQ+ SG DGT+R+W + F D + F+ ++ Q++ DK
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTI 152
Query: 351 KIDKTKSLRK--------SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL 402
K+ T + K S ++CV P S N +
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPN------------------------SSNPII 188
Query: 403 LSSSADKTVRLWQVGIDRC-LRV--FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+S DK V++W + C L+ H Y+ +V +P D + SG DG+ +W++
Sbjct: 189 VSCGWDKLVKVWNLA--NCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLN 245
Query: 460 RCQVVDYTDIREIVSAVCYCPD 481
+ + D +I++A+C+ P+
Sbjct: 246 EGKHLYTLDGGDIINALCFSPN 267
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 48/156 (30%)
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER---LDGFDVQD----------- 326
+ H G + T+ S DG ASGG+DG +W + E + LDG D+ +
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL 271
Query: 327 ---TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383
T PS I L I +D K+++ T S + PP
Sbjct: 272 CAATGPS---IKIWDLEGKIIVDELKQEVISTSSKAE---------PP------------ 307
Query: 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI 418
+ L+WS +G L + D VR+WQV I
Sbjct: 308 ------QCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV---VDYTDIR---EIVSAVCYCP 480
HN +VT +A P + +S S D + +W++ R + + +R VS V
Sbjct: 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96
Query: 481 DGKGGIVGTMTGNCRFYDI 499
DG+ + G+ G R +D+
Sbjct: 97 DGQFALSGSWDGTLRLWDL 115
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 384 FQGHSSEVLDLSWSK-NGFLLSSSADKTVRLWQ-VGIDR-CLRVFSHNNYVTSVAFNPVD 440
F GH+ +VL +++S N ++S S DKT++LW +G+ + ++ SH+ +V+ V F+P
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160
Query: 441 DNYFI-SGSIDGKVRIWEVRRCQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
N I S D V++W + C++ ++ ++ V PDG G G +D
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Query: 499 IKDNQ 503
+ + +
Sbjct: 221 LNEGK 225
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
P +GHS V D+ S +G F LS S D T+RLW + R F H V SVAF+
Sbjct: 55 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 114
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DIREIVSAVCYCPDGKGGIV 487
D+ +SGS D +++W V YT E VS V + P+ I+
Sbjct: 115 S-DNRQIVSGSRDKTIKLWNT--LGVCKYTVQDESHSEWVSCVRFSPNSSNPII 165
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 82/213 (38%), Gaps = 60/213 (28%)
Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329
+L++ T + F+ H +L++ FS D + + SG D T+++W + + + VQD
Sbjct: 91 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK---YTVQDES- 146
Query: 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389
S ++CV P
Sbjct: 147 ------------------------------HSEWVSCVRFSPN----------------- 159
Query: 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC-LRVFSHNNYVTSVAFNPVDDNYFISGS 448
S N ++S DK V++W + + H Y+ +V +P D + SG
Sbjct: 160 -------SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGG 211
Query: 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
DG+ +W++ + + D +I++A+C+ P+
Sbjct: 212 KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN 244
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 13/85 (15%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGID--------RCLRVFSHNNYVTS 433
+GH+ V ++ + +LS+S DKT+ +W++ D R LR H+++V+
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSD 68
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEV 458
V + D + +SGS DG +R+W++
Sbjct: 69 VVISS-DGQFALSGSWDGTLRLWDL 92
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV---VDYTDIR---EIVSAVCYCP 480
HN +VT +A P + +S S D + +W++ R + + +R VS V
Sbjct: 14 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 73
Query: 481 DGKGGIVGTMTGNCRFYDI 499
DG+ + G+ G R +D+
Sbjct: 74 DGQFALSGSWDGTLRLWDL 92
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 380 PLHEFQGHSSEVLDLSWSK-NGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
P GH+ V DL+ S+ N F +SSS DKT+RLW + + F H + V SVAF+
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 438 PVDDNYFISGSIDGKVRIWEVR-RCQV--VDYTDIREIVSAVCYCP 480
P D+ +S + ++++W + C+ + + + VS V Y P
Sbjct: 128 P-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 37/234 (15%)
Query: 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354
D L SG D TV +WK+ E E+ F + P NH V + +
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGI----PHKALTGHNHF-------VSDLALSQ 86
Query: 355 TKSLRKSSDLTCVVLPPKVFRLLE----KPLHEFQGHSSEVLDLSWSK-NGFLLSSSADK 409
SS K RL + F GH SEV +++S N +LS+ A++
Sbjct: 87 ENCFAISSSWD------KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAER 140
Query: 410 TVRLWQVGIDRC----LRVFSHNNYVTSVAFNPVDDN---------YFISGSIDGKVRIW 456
++LW + + C +H+++V+ V ++P+ + YF S DG++++W
Sbjct: 141 EIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199
Query: 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510
+ V+ + P+GK G +DI N Y Q +
Sbjct: 200 NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL-NLTYPQREF 252
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314
F AHE ++ + S +G+Y+A+GG+D + +W ++
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAF 436
+K L + GH V L ++ G L+S S D+TVR+W + C VF HN+ V +
Sbjct: 152 KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 437 NPVDD-NYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN 493
+ Y ++GS D + +W++ + V D+ + + V + P+ VG + G+
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGH 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 33/201 (16%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H+G + +K++ G L SG D TVRVW + + F+ ++ CL
Sbjct: 160 GHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI------- 211
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLP--------------PKVFRLLEKPLH---EF 384
V+ + I + + + L LP P VF E+ +
Sbjct: 212 -----VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266
Query: 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY 443
+GH + V +S N ++S S D T+ +W V +CL + S H + + S ++ +
Sbjct: 267 RGHMASVRTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKR 324
Query: 444 FISGSIDGKVRIWEVRRCQVV 464
IS S+D +RIW++ +++
Sbjct: 325 CISASMDTTIRIWDLENGELM 345
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 70/172 (40%), Gaps = 22/172 (12%)
Query: 297 QYLASGGEDGTVRVWKVI----------EHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
+Y+ +G D T+ VWK+ EH+ F + +P + H++ + +
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW-SKNGFLLSS 405
+ + S D T +V K L+ GH+ + + + +S+
Sbjct: 278 GHGNIV-----VSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 406 SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
S D T+R+W ++ +++ + V + D + +S + DG +R W+
Sbjct: 329 SMDTTIRIWD--LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAF 436
+K L + GH V L ++ G L+S S D+TVR+W + C VF HN+ V +
Sbjct: 152 KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 437 NPVDD-NYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN 493
+ Y ++GS D + +W++ + V D+ + + V + P+ VG + G+
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGH 269
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 33/200 (16%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
H+G + +K++ G L SG D TVRVW + + F+ ++ CL
Sbjct: 160 GHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI------- 211
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLP--------------PKVFRLLEKPLH---EF 384
V+ + I + + + L LP P VF E+ +
Sbjct: 212 -----VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266
Query: 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY 443
+GH + V +S N ++S S D T+ +W V +CL + S H + + S ++ +
Sbjct: 267 RGHXASVRTVSGHGN-IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDH-ERKR 324
Query: 444 FISGSIDGKVRIWEVRRCQV 463
IS S D +RIW++ ++
Sbjct: 325 CISASXDTTIRIWDLENGEL 344
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
P+ F+GHS V D + + +G + LS+S DKT+RLW V + F H + V SV +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
+ ISGS D +++W ++ + + VS V P+ K
Sbjct: 117 K-KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 86/199 (43%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
T Q F+ H+ + ++ + SG D T++VW + CL
Sbjct: 99 TYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
+ H +SQ+ + +K D + +D F++ +F GH+S +
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
L+ S +G L++S+ D + LW + + S + V S+AF+P + Y+++ +
Sbjct: 201 TLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
++++ + +VD D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 372 KVFRLLEKPLHE----FQGHSSEV--LDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF 425
K RL + E F GH S+V +D+ K ++S S DKT+++W + +
Sbjct: 87 KTLRLWDVATGETYQRFVGHKSDVXSVDID-KKASXIISGSRDKTIKVWTIKGQCLATLL 145
Query: 426 SHNNYVTSVAFNP---VDDN--YFISGSIDGKVRIWEVRRCQV-VDYTDIREIVSAVCYC 479
HN++V+ V P DD+ IS D V+ W + + Q+ D+ ++ +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 480 PDG 482
PDG
Sbjct: 206 PDG 208
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAF 436
+GH+ V L+ S LLS+S DKT+ W++ D +R F ++++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQV----------VDYTDIREIVSAVCYCPDGKGGI 486
D Y +S S D +R+W+V + V DI + S + K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 487 VGTMTGNC 494
V T+ G C
Sbjct: 133 VWTIKGQC 140
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
A E +++ +S DGQ L +G D +RVW+V
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 385 QGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443
Q H+ VLD+ WS +G + ++S DKT ++W + ++ +++ H+ V ++ + NY
Sbjct: 83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-PNY 141
Query: 444 --FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
++GS D ++ W+ R + + E CYC D
Sbjct: 142 SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE----RCYCAD 177
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 426 SHNNYVTSVAFNP--VDDNYFISGSIDGKVRIWEVRRC-QVVDYTDIREI--VSAVCYCP 480
S ++ + ++F+P + N+ I+GS VR WEV+ Q + V VC+
Sbjct: 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD 96
Query: 481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509
DG + + +D+ NQ Q Q
Sbjct: 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQ 125
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 29/210 (13%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
I ++ + +G YLA G V++W V + +RL T S +++ S ++
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 205
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
I R+ E + GHS EV L W+ +G L S
Sbjct: 206 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248
Query: 406 SADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
D V +W L+ F+ H V +VA+ P N + G+ D +RIW V
Sbjct: 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
+ D V ++ + P K I G
Sbjct: 309 CSGACLSAVDAHSQVCSILWSPHYKELISG 338
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/335 (20%), Positives = 127/335 (37%), Gaps = 76/335 (22%)
Query: 124 SISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVV---------SDNDQDEIEIESRL 174
S+ ++ +APE+ + L + DW G L V S + D +++
Sbjct: 91 SLPDRILDAPEIRNDYYLN------LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQME 144
Query: 175 QESGSSQSVSF---DEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAM 231
Q SV++ +L G+SS+ VQ +Q + R++ +V
Sbjct: 145 QPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDVQQQKRLRNMTSHSARV----------- 192
Query: 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK 291
+L + L+ G R + H V+ +++L H + ++
Sbjct: 193 ---------GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS------GHSQEVCGLR 237
Query: 292 FSLDGQYLASGGEDGTVRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDV 347
++ DG++LASGG D V VW E L F + + + L
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 348 DKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP--------------------------L 381
++ + ++ + L+ V +V +L P +
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357
Query: 382 HEFQGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQ 415
E +GH+S VL L+ S +G + S++AD+T+RLW+
Sbjct: 358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 315 EHER-----LDGFDVQDTDPSCLYFTINHLSQLIPIDVDK--EKIDKTKSLRKSSDLTCV 367
EH++ L+GFDV++ ++ Q P + + K+ SS TC
Sbjct: 32 EHQKAWALNLNGFDVEEAK----ILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCR 87
Query: 368 VLPPKVFRLLEKPLHEFQGHSSEVLDL-SWSKNGFLLSSSADKTVRLWQVG---IDRCLR 423
+P R+L+ P + + L+L WS +G +L+ + D +V LW I + L+
Sbjct: 88 YIPSLPDRILDAP----EIRNDYYLNLVDWS-SGNVLAVALDNSVYLWSASSGDILQLLQ 142
Query: 424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
+ Y++SVA+ + NY G+ +V++W+V++
Sbjct: 143 MEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ 178
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315
E H +L++ S DG +AS D T+R+W+ E
Sbjct: 359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 29/210 (13%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
I ++ + +G YLA G V++W V + +RL T S +++ S ++
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 216
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
I R+ E + GHS EV L W+ +G L S
Sbjct: 217 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 259
Query: 406 SADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
D V +W L+ F+ H V +VA+ P N + G+ D +RIW V
Sbjct: 260 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
+ D V ++ + P K I G
Sbjct: 320 CSGACLSAVDAHSQVCSILWSPHYKELISG 349
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/335 (20%), Positives = 127/335 (37%), Gaps = 76/335 (22%)
Query: 124 SISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVV---------SDNDQDEIEIESRL 174
S+ ++ +APE+ + L + DW G L V S + D +++
Sbjct: 102 SLPDRILDAPEIRNDYYLN------LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQME 155
Query: 175 QESGSSQSVSF---DEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAM 231
Q SV++ +L G+SS+ VQ +Q + R++ +V
Sbjct: 156 QPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDVQQQKRLRNMTSHSARV----------- 203
Query: 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK 291
+L + L+ G R + H V+ +++L H + ++
Sbjct: 204 ---------GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS------GHSQEVCGLR 248
Query: 292 FSLDGQYLASGGEDGTVRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDV 347
++ DG++LASGG D V VW E L F + + + L
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 348 DKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP--------------------------L 381
++ + ++ + L+ V +V +L P +
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 368
Query: 382 HEFQGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQ 415
E +GH+S VL L+ S +G + S++AD+T+RLW+
Sbjct: 369 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 315 EHER-----LDGFDVQDTDPSCLYFTINHLSQLIPIDVDK--EKIDKTKSLRKSSDLTCV 367
EH++ L+GFDV++ ++ Q P + + K+ SS TC
Sbjct: 43 EHQKAWALNLNGFDVEEAK----ILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCR 98
Query: 368 VLPPKVFRLLEKPLHEFQGHSSEVLDL-SWSKNGFLLSSSADKTVRLWQVG---IDRCLR 423
+P R+L+ P + + L+L WS +G +L+ + D +V LW I + L+
Sbjct: 99 YIPSLPDRILDAP----EIRNDYYLNLVDWS-SGNVLAVALDNSVYLWSASSGDILQLLQ 153
Query: 424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
+ Y++SVA+ + NY G+ +V++W+V++
Sbjct: 154 MEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ 189
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315
E H +L++ S DG +AS D T+R+W+ E
Sbjct: 370 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 406
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 29/210 (13%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
I ++ + +G YLA G V++W V + +RL T S +++ S ++
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 125
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
I R+ E + GHS EV L W+ +G L S
Sbjct: 126 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168
Query: 406 SADKTVRLWQV----GIDRCLRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
D V +W G L+ F+ H V +VA+ P N + G+ D +RIW V
Sbjct: 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
+ D V ++ + P K I G
Sbjct: 229 CSGACLSAVDAHSQVCSILWSPHYKELISG 258
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/335 (20%), Positives = 127/335 (37%), Gaps = 76/335 (22%)
Query: 124 SISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVV---------SDNDQDEIEIESRL 174
S+ ++ +APE+ + L + DW G L V S + D +++
Sbjct: 11 SLPDRILDAPEIRNDYYLN------LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQME 64
Query: 175 QESGSSQSVSF---DEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAM 231
Q SV++ +L G+SS+ VQ +Q + R++ +V
Sbjct: 65 QPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDVQQQKRLRNMTSHSARV----------- 112
Query: 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK 291
+L + L+ G R + H V+ +++L H + ++
Sbjct: 113 ---------GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS------GHSQEVCGLR 157
Query: 292 FSLDGQYLASGGEDGTVRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDV 347
++ DG++LASGG D V VW E L F + + + L
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 348 DKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP--------------------------L 381
++ + ++ + L+ V +V +L P +
Sbjct: 218 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277
Query: 382 HEFQGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQ 415
E +GH+S VL L+ S +G + S++AD+T+RLW+
Sbjct: 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDL-SWSKNGFLLSSSADKTVRLWQVG---IDR 420
TC +P R+L+ P + + L+L WS +G +L+ + D +V LW I +
Sbjct: 5 TCRYIPSLPDRILDAP----EIRNDYYLNLVDWS-SGNVLAVALDNSVYLWSASSGDILQ 59
Query: 421 CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
L++ Y++SVA+ + NY G+ +V++W+V++
Sbjct: 60 LLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ 98
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315
E H +L++ S DG +AS D T+R+W+ E
Sbjct: 279 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK-TVRLWQV-----GIDRCLRVFSHNNYV 431
EKP+ Q S+ DL WS N +++ + D ++ L+ I+ R +H++ V
Sbjct: 58 EKPIASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116
Query: 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
+V FN DN SG +G++ IW++ +C
Sbjct: 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 374 FRLLEKPLHEF-QGHSSEVLDLSW--SKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNN 429
R PL QGH +L L W LLSS D TV LW L F + N
Sbjct: 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN 306
Query: 430 YVTSVAFNPVDDNYFISGSIDGKVRI 455
+ F P + F S D K+ +
Sbjct: 307 WCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
++LS S D TV+LW + L + F H ++V VAFNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+++++S D T+++W C+ H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Query: 460 RCQV 463
+V
Sbjct: 259 TYKV 262
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 57/190 (30%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
HE ++ ++ F GQ LAS +D TVR+W+ G +DPS + I LS
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS--WKCICTLSG 249
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG 400
HS + D++W + G
Sbjct: 250 F--------------------------------------------HSRTIYDIAWCQLTG 265
Query: 401 FLLSSSADKTVRLWQ--VGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSID 450
L ++ D +R++Q D FS H+ V VA+NP + S S D
Sbjct: 266 ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325
Query: 451 GKVRIWEVRR 460
G+V W+ +R
Sbjct: 326 GEVAFWKYQR 335
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVF-SHNNYVTSVAFNPVD 440
+GH V ++WS G +L S+S D T +W+ D C+ H N V SVA+ P
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-S 116
Query: 441 DNYFISGSIDGKVRIWEV 458
N + S D V +WEV
Sbjct: 117 GNLLATCSRDKSVWVWEV 134
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
HE + ++ ++ G LA+ D +V VW+V E + + V ++ + + H SQ
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162
Query: 342 LIPIDVDKEKIDKTKSLRKSSD--LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399
+ + D K R+ D + C L +GH S V L++ +
Sbjct: 163 ELLASASYD--DTVKLYREEEDDWVCCATL---------------EGHESTVWSLAFDPS 205
Query: 400 G-FLLSSSADKTVRLWQ 415
G L S S D+TVR+W+
Sbjct: 206 GQRLASCSDDRTVRIWR 222
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 384 FQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGID---RCLRVF-SHNNYVTSVAFNP 438
+GH +EV ++W+ +G LL++ S DK+V +W+V + C+ V SH V V ++P
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
Query: 439 VDDNYFISGSIDGKVRI 455
+ S S D V++
Sbjct: 161 SQE-LLASASYDDTVKL 176
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
++LS S D TV+LW + L + F H ++V VAFNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+++++S D T+++W C+ H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Query: 460 RCQV 463
+V
Sbjct: 259 TYKV 262
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
++LS S D TV+LW + L + F H ++V VAFNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+++++S D T+++W C+ H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Query: 460 RCQV 463
+V
Sbjct: 259 TYKV 262
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
+P +GH E LSW+ N G+LLS+S D T+ LW + ID H
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
V VA++ + ++ F S + D K+ IW+ R
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 265
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 379 KPLHEFQGHSSEVLDLSWSK-NGFLLSS-SADKTVRLWQV-GIDRCLRVF-SHNNYVTSV 434
KP H H++EV LS++ + F+L++ SADKTV LW + + L F SH + + V
Sbjct: 270 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 329
Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRR 460
++P ++ S D ++ +W++ +
Sbjct: 330 QWSPHNETILASSGTDRRLHVWDLSK 355
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 371 PKVFRLLEKPLHEFQGHSSEVLDLSWS--KNGFLLSSSADKTVRLWQVGIDRCLR----V 424
PK R+++ + F GH++ V D++W S + D+ + +W + + V
Sbjct: 217 PKEHRVIDAK-NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 275
Query: 425 FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
+H V ++FNP + +GS D V +W++R ++
Sbjct: 276 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLW---QVGIDRCLR----- 423
R L+ LH F+ H E+ + WS + L SS D+ + +W ++G ++
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 368
Query: 424 ----VFSHNNYVTSV---AFNPVDDNYFISGSIDGKVRIWEV 458
+F H + + ++NP + S S D +++W++
Sbjct: 369 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
+P +GH E LSW+ N G+LLS+S D T+ LW + ID H
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
V VA++ + ++ F S + D K+ IW+ R
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 379 KPLHEFQGHSSEVLDLSWSK-NGFLLSS-SADKTVRLWQV-GIDRCLRVF-SHNNYVTSV 434
KP H H++EV LS++ + F+L++ SADKTV LW + + L F SH + + V
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327
Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRR 460
++P ++ S D ++ +W++ +
Sbjct: 328 QWSPHNETILASSGTDRRLHVWDLSK 353
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 371 PKVFRLLEKPLHEFQGHSSEVLDLSWS--KNGFLLSSSADKTVRLWQVGIDRCLR----V 424
PK R+++ + F GH++ V D++W S + D+ + +W + + V
Sbjct: 215 PKEHRVIDAK-NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273
Query: 425 FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
+H V ++FNP + +GS D V +W++R ++
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLW---QVGIDRCLR----- 423
R L+ LH F+ H E+ + WS + L SS D+ + +W ++G ++
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366
Query: 424 ----VFSHNNYVTSV---AFNPVDDNYFISGSIDGKVRIWEV 458
+F H + + ++NP + S S D +++W++
Sbjct: 367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
+P +GH E LSW+ N G+LLS+S D T+ LW + ID H
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
V VA++ + ++ F S + D K+ IW+ R
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 267
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKV----IEHERLDGFDVQDTDPSCLYFTINHL 339
EG L+ +L+G YL S +D T+ +W + EH +D ++ + + HL
Sbjct: 187 EGYGLSWNPNLNG-YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL 245
Query: 340 --SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
L D +K+ + ++ KP H H++EV LS++
Sbjct: 246 LHESLFGSVADDQKLMIWDTRNNNT---------------SKPSHTVDAHTAEVNCLSFN 290
Query: 398 K-NGFLLSS-SADKTVRLWQV-GIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKV 453
+ F+L++ SADKTV LW + + L F SH + + V ++P ++ S D ++
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Query: 454 RIWEVRR 460
+W++ +
Sbjct: 351 HVWDLSK 357
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 371 PKVFRLLEKPLHEFQGHSSEVLDLSWS--KNGFLLSSSADKTVRLWQVGIDRCLR----V 424
PK R+++ + F GH++ V D++W S + D+ + +W + + V
Sbjct: 219 PKEHRVIDAK-NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 277
Query: 425 FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
+H V ++FNP + +GS D V +W++R ++
Sbjct: 278 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLW---QVGIDRCLR----- 423
R L+ LH F+ H E+ + WS + L SS D+ + +W ++G ++
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 370
Query: 424 ----VFSHNNY---VTSVAFNPVDDNYFISGSIDGKVRIWEV 458
+F H + ++ ++NP + S S D +++W++
Sbjct: 371 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
++LS S D TV+LW + L + F H ++V VAFNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+++++S D T+++W C+ H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Query: 460 RCQV 463
+V
Sbjct: 259 TYKV 262
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
H VT VA NP D + + S+D V+IW++R + + R V+A C+ PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 483 KGGIVGTMTGNCRFY 497
+ R Y
Sbjct: 309 ARLLTTDQKSEIRVY 323
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 411 VRLWQVGI---DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
+ LW GI ++ +T + FNP++ N F + S++G R+
Sbjct: 144 IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
H VT VA NP D + + S+D V+IW++R + + R V+A C+ PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 483 KGGIVGTMTGNCRFY 497
+ R Y
Sbjct: 309 ARLLTTDQKSEIRVY 323
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 411 VRLWQVGI---DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
+ LW GI ++ +T + FNP++ N F + S++G R+
Sbjct: 144 IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
H VT VA NP D + + S+D V+IW++R + + R V+A C+ PDG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 411 VRLWQVGI---DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
+ LW GI ++ +T + FNP++ N F + S++G R+
Sbjct: 145 IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 192
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS--KNGFLLSSSADKTVRLWQV---GIDRC 421
+VLP ++K + GH++ VLD++W + + S S D TV +W++ G+
Sbjct: 60 LVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119
Query: 422 LR-----VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
LR + H V VA++P N +S D + +W+V
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 377 LEKPLHEFQGHSSEVLDLSW--SKNGFLLSSSADKTVRLWQVGIDRCLRVFS---HNNYV 431
L +P+ +GH+ V ++W + LLS+ D + +W VG + H + +
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468
SV ++ D + D +VR+ E R+ VV D
Sbjct: 180 YSVDWS-RDGALICTSCRDKRVRVIEPRKGTVVAEKD 215
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 390 EVLDLSWSKNGFLL---------------SSSADKTVRLWQVGIDRCLRVFSHNNY-VTS 433
E LDL WS G L SSS D +RLW + + ++ +
Sbjct: 68 ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTG 492
+AF+P D Y +G+ GKV I+ V + D R + + ++ Y PDGK G + G
Sbjct: 128 LAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 493 NCRFYDIKDNQL 504
+DI +L
Sbjct: 187 IINIFDIATGKL 198
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 31/199 (15%)
Query: 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301
P L G + +V + V+ +E S L T +F IL++ +S DG+YLAS
Sbjct: 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYS-LDTRGKF------ILSIAYSPDGKYLAS 181
Query: 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361
G DG + ++ + + L + L F+ + SQL+ D I
Sbjct: 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD--SQLLVTASDDGYI--------- 230
Query: 362 SDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSW-SKNGFLLSSSADKTVRLWQVGID 419
K++ + L GH+S VL++++ + +SSS+DK+V++W VG
Sbjct: 231 ----------KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280
Query: 420 RCLRV-FSHNNYVTSVAFN 437
C+ F H + V V +N
Sbjct: 281 TCVHTFFDHQDQVWGVKYN 299
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 28/227 (12%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYF------- 334
H+ ++++ S AS D +R+W + +++ D D L F
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYL 137
Query: 335 -TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP-------------KVFRLLE-K 379
T H+ ++ V+ K + + R L+ P +F + K
Sbjct: 138 ATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK 197
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN 437
LH +GH+ + L++S + L+++S D ++++ V S H ++V +VAF
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 438 PVDDNYFISGSIDGKVRIWEV--RRCQVVDYTDIREIVSAVCYCPDG 482
P DD +F+S S D V++W+V R C V + D ++ V V Y +G
Sbjct: 258 P-DDTHFVSSSSDKSVKVWDVGTRTC-VHTFFDHQDQVWGVKYNGNG 302
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 28/199 (14%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC---------LY 333
H+ + T+ DG SGG+D +V+VW + + L ++ ++ +C ++
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDL-TCVVLPPK---VFRL-----------LE 378
+ +++ D K K S + T V P+ F ++
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
Query: 379 KP--LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
P HS + L++S + FL S S D TV + R SH ++VT V
Sbjct: 258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGV 317
Query: 435 AFNPVDDNYFISGSIDGKV 453
A++P+D + F + D KV
Sbjct: 318 AWSPLDHSKFTTVGWDHKV 336
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 403 LSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
+S D +V++W + L+ + +H++ V VA P D F+S DG++ +W+ R+
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 462 QV---VDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDNQLYQQNQICLQ 513
+ +D+ I ++V + P+ G TGN +IK+ Q + + Q
Sbjct: 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ 270
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 386 GHSSEVLDLSWS--KNGFLLSSSADKTVRLWQV---GIDRCLR-----VFSHNNYVTSVA 435
GH++ VLD++W + + S S D TV +W++ G+ LR + H V VA
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 436 FNPVDDNYFISGSIDGKVRIWEV 458
++P N +S D + +W+V
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 377 LEKPLHEFQGHSSEVLDLSW--SKNGFLLSSSADKTVRLWQVGIDRCLRVFS---HNNYV 431
L +P+ +GH+ V ++W + LLS+ D + +W VG + H + +
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468
SV ++ D + D +VR+ E R+ VV D
Sbjct: 180 YSVDWS-RDGALICTSCRDKRVRVIEPRKGTVVAEKD 215
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
V H V +A+ P +DN SGS D V +WE+
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTS 433
+GH E LSW+ N G LLS+S D TV LW + +D H+ V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVR 459
VA++ + ++ F S + D K+ IW+ R
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTR 260
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 379 KPLHEFQGHSSEVLDLSWSK-NGFLLSS-SADKTVRLWQV-GIDRCLRVF-SHNNYVTSV 434
KP H H++EV LS++ + F+L++ SADKTV LW + + L F SH + + V
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRR 460
++P ++ S D ++ +W++ +
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSK 351
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 384 FQGHSSEVLDLSWS--KNGFLLSSSADKTVRLWQVGIDRCLR----VFSHNNYVTSVAFN 437
F GHS+ V D++W S + D+ + +W + + V +H V ++FN
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467
P + +GS D V +W++R ++ +T
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHT 314
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLW---QVGIDRCLR----- 423
R L+ LH F+ H E+ + WS + L SS D+ + +W ++G ++
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 424 ----VFSHNNYVTSV---AFNPVDDNYFISGSIDGKVRIWEV 458
+F H + + ++NP + S S D ++IW++
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTS 433
+GH E LSW+ N G LLS+S D TV LW + +D H+ V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVR 459
VA++ + ++ F S + D K+ IW+ R
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTR 260
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 379 KPLHEFQGHSSEVLDLSWSK-NGFLLSS-SADKTVRLWQV-GIDRCLRVF-SHNNYVTSV 434
KP H H++EV LS++ + F+L++ SADKTV LW + + L F SH + + V
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRR 460
++P ++ S D ++ +W++ +
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSK 351
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 384 FQGHSSEVLDLSWS--KNGFLLSSSADKTVRLWQVGIDRCLR----VFSHNNYVTSVAFN 437
F GHS+ V D++W S + D+ + +W + + V +H V ++FN
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467
P + +GS D V +W++R ++ +T
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHT 314
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLW---QVGIDRCLR----- 423
R L+ LH F+ H E+ + WS + L SS D+ + +W ++G ++
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 424 ----VFSHNNYVTSV---AFNPVDDNYFISGSIDGKVRIWE 457
+F H + + ++NP + S S D +IW+
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 399 NGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
NG ++S S D T+ +++G D L+ S HN +T++ NP+ ISGS DG++ W
Sbjct: 309 NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEW 362
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYF 444
+ LSW + + AD T+R+W V +C++ ++ N V VA +
Sbjct: 256 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---TGNGRI 312
Query: 445 ISGSIDGKVRIWEVRRCQVV 464
IS S+DG + +E+ +V+
Sbjct: 313 ISLSLDGTLNFYELGHDEVL 332
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 279 EFLAHEGSILT-MKFS-LDG-QYLASGGEDGTVRVW 311
+F H S++T +KFS + G QYL SG E G V VW
Sbjct: 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTV 411
+D K +D T V + ++K + Q ++ + + + NG ++S S D T+
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 412 RLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
+++G D L+ S HN +T++ NP+ ISGS DG++ W
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIXEW 362
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYF 444
+ LSW + + AD T+R+W V +C++ ++ N V VA +
Sbjct: 256 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---TGNGRI 312
Query: 445 ISGSIDGKVRIWEVRRCQVV 464
IS S+DG + +E+ +V+
Sbjct: 313 ISLSLDGTLNFYELGHDEVL 332
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 279 EFLAHEGSILT-MKFS-LDG-QYLASGGEDGTVRVW 311
+F H S++T +KFS + G QYL SG E G V VW
Sbjct: 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 379 KPLHEFQGHSSEVLDLSWSK-NGFLLSS-SADKTVRLWQV-GIDRCLRVF-SHNNYVTSV 434
KP H H++EV LS++ + F+L++ SADKTV LW + + L F SH + + V
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 323
Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRR 460
++P ++ S D ++ +W++ +
Sbjct: 324 QWSPHNETILASSGTDRRLNVWDLSK 349
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTS 433
+GH E LSW+ N G LLS+S D T+ LW + +D H V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVR 459
V+++ + ++ F S + D K+ IW+ R
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTR 258
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 384 FQGHSSEVLDLSWS--KNGFLLSSSADKTVRLWQVGIDRCLR----VFSHNNYVTSVAFN 437
F GH++ V D+SW S + D+ + +W + + V +H V ++FN
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQV 463
P + +GS D V +W++R ++
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKL 308
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQV--------------G 417
R L+ LH F+ H E+ + WS + L SS D+ + +W + G
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362
Query: 418 IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
L + H ++ ++NP + S S D +++W++
Sbjct: 363 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 384 FQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGID----RCLRVF-SHNNYVTSVAFN 437
+GH +EV ++WS +G+ L++ S DK+V +W+ C+ V H+ V V ++
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV 476
P + S S D VRIW+ DY D E V+ +
Sbjct: 163 P-SEALLASSSYDDTVRIWK-------DYDDDWECVAVL 193
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 64/180 (35%), Gaps = 61/180 (33%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
HE + + +S DG YLA+ D +V +W+ D + C+ H
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWET---------DESGEEYECISVLQEH--- 152
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401
S D+ V+ P SE L
Sbjct: 153 -------------------SQDVKHVIWHP-----------------SEAL--------- 167
Query: 402 LLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVDDNY-FISGSIDGKVRIWE 457
L SSS D TVR+W+ D C+ V + H V S F+ + + SGS D VR+W+
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 282 AHEGSILTMKF-SLDGQY-LASGGEDGTVRVWKVI 314
HEG++ + F +G + L SG +D TVRVWK +
Sbjct: 195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 24/182 (13%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
++F H + S DG L +GG D TVR W + E +L Q D + F++
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL-----QQHDFTSQIFSLG 231
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
+ + V E SS++ +V + + ++ H S VL L ++
Sbjct: 232 YCPTGEWLAVGME----------SSNV-------EVLHVNKPDKYQLHLHESCVLSLKFA 274
Query: 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
G + +S+ D + W+ + ++ V S + VDD Y ++GS D K ++
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS-VDDKYIVTGSGDKKATVY 333
Query: 457 EV 458
EV
Sbjct: 334 EV 335
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 41/104 (39%)
Query: 403 LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
S +D + +W + +R F + S D +G +D VR W++R +
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Query: 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506
+ D + ++ YCP G+ VG + N + YQ
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 31/134 (23%)
Query: 382 HEFQGHSSEVLDLSWSK--NGFLLSSSADKTVRLWQV-GIDRCLRVF------------- 425
H QGH E+L +SWS + L ++SAD V+LW V CL
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239
Query: 426 ---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCP 480
+HN V + F D + ++ D ++R+W + +V+Y + C
Sbjct: 240 ANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV---------CN 289
Query: 481 DGKGGIVGTMTGNC 494
+ K G+ T++ C
Sbjct: 290 NSKKGLKFTVSCGC 303
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 101/266 (37%), Gaps = 42/266 (15%)
Query: 283 HEGSILTMKFS-LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------DPSCLYFT 335
H G I T+ ++G+Y+ SGG DG + ++ + R + + P ++
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 336 INHLSQLIPIDV---DKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
+ + Q P D DKT + ++ L VF E + H S V
Sbjct: 102 VETV-QWYPHDTGMFTSSSFDKTLKVWDTNTLQTA----DVFNFEETV---YSHHMSPVS 153
Query: 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451
+K+ + + V+L + C + H + +V+++P D + S D
Sbjct: 154 ----TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209
Query: 452 KVRIWEVRRC---------------QVVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGNC 494
+V++W+VRR Q V+ + V+ +C+ DG +
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 495 RFYDIKD--NQLYQQNQICLQGKKKL 518
R ++ + N L ++C KK L
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGL 295
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 197 SFVQPLPSRQDEESR-DLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQR 255
S ++PL + + + S + ++ R VK L A+A + G TL +E G+R
Sbjct: 225 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL----YETEFGER 280
Query: 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315
+ + V P L EF AH ++++ F+ G+ L S G DG +R W V
Sbjct: 281 IGSLSV-PTHSSQASLG------EF-AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 332
Query: 316 HERLDGFDVQ 325
ER+ ++
Sbjct: 333 KERITTLNMH 342
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 425 FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
F+H+++V S++FN + S DGK+R W+V+
Sbjct: 298 FAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVK 331
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 197 SFVQPLPSRQDEESR-DLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQR 255
S ++PL + + + S + ++ R VK L A+A + G TL +E G+R
Sbjct: 215 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL----YETEFGER 270
Query: 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315
+ + V P L EF AH ++++ F+ G+ L S G DG +R W V
Sbjct: 271 IGSLSV-PTHSSQASLG------EF-AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322
Query: 316 HERLDGFDVQ 325
ER+ ++
Sbjct: 323 KERITTLNMH 332
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 425 FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
F+H+++V S++FN + S DGK+R W+V+
Sbjct: 288 FAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVK 321
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVDDN 442
Q H SE+ L + +G L+SSS D +++W V R + H VT +A N
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 443 YFISGSIDGKVRIWE 457
+S S+DG +R+WE
Sbjct: 193 -VLSASLDGTIRLWE 206
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 231 MARIIDRHGSATLKPGDHEL--TLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGS 286
+ I R GS LK D+ T +MRR + + + L S + Q + AH
Sbjct: 79 LFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE 138
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKV 313
I +KF G+ L S +D +++W V
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSV 165
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS 426
GH + V D++ G +LS+S D T+RLW+ G + F+
Sbjct: 176 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVDDN 442
Q H SE+ L + +G L+SSS D +++W V R + H VT +A N
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 443 YFISGSIDGKVRIWE 457
+S S+DG +R+WE
Sbjct: 196 -VLSASLDGTIRLWE 209
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 231 MARIIDRHGSATLKPGDHEL--TLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGS 286
+ I R GS LK D+ T +MRR + + + L S + Q + AH
Sbjct: 82 LFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE 141
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKV 313
I +KF G+ L S +D +++W V
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSV 168
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS 426
GH + V D++ G +LS+S D T+RLW+ G + F+
Sbjct: 179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
H G + ++ ++L G L+S G+DG VR+WK
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356
Q +A+G +DG +R++K+ E +L +++ N +D D + +
Sbjct: 231 QLIATGCKDGRIRIFKITE--KLSPLASEES-----LTNSNXFDNSADVDXDAQGRSDSN 283
Query: 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK-TVRLWQ 415
+ K+ + L + L E H+ EV +SW+ G +LSS+ D VRLW+
Sbjct: 284 TEEKAELQS---------NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
Query: 416 V 416
Sbjct: 335 A 335
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
H G + ++ ++L G L+S G+DG VR+WK
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356
Q +A+G +DG +R++K+ E +L +++ N +D+D + +
Sbjct: 231 QLIATGCKDGRIRIFKITE--KLSPLASEES-----LTNSNMFDNSADVDMDAQGRSDSN 283
Query: 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK-TVRLWQ 415
+ K+ + L + L E H+ EV +SW+ G +LSS+ D VRLW+
Sbjct: 284 TEEKAELQS---------NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
Query: 416 VGID---RCLRVFS 426
+C+ V +
Sbjct: 335 ATYSNEFKCMSVIT 348
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
H G + ++ ++L G L+S G+DG VR+WK
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 333
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356
Q +A+G +DG +R++K+ E +L +++ N +D+D + +
Sbjct: 229 QLIATGCKDGRIRIFKITE--KLSPLASEES-----LTNSNMFDNSADVDMDAQGRSDSN 281
Query: 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK-TVRLWQ 415
+ K+ + L + L E H+ EV +SW+ G +LSS+ D VRLW+
Sbjct: 282 TEEKAELQS---------NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 332
Query: 416 VGID---RCLRVFS 426
+C+ V +
Sbjct: 333 ATYSNEFKCMSVIT 346
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 403 LSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+S S D +++W + L + +H VT VA +P D+ F+S S D ++ +W+ R
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV-----FSHNNYVTSVAFNPVDDNYFI 445
V DL+W +L +S V LW++ + L V + H++ V++V+ +
Sbjct: 85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAV 143
Query: 446 SGSIDGKVRIWEVRRCQVV 464
SGS D +++W++ + QVV
Sbjct: 144 SGSKDICIKVWDLAQ-QVV 161
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
+AH GS+ + +S DG +AS D T+++W V
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 31/178 (17%)
Query: 290 MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349
+ S D Q++A GG+D V V+K L G V + TI H P ++
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYK------LSGASVSEVK------TIVH-----PAEITS 496
Query: 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDLSWSKNGF-LLSSSA 407
+ ++D + V+P V E + + H+++V +SWS + L + S
Sbjct: 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556
Query: 408 DKTVRLWQVG-------IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
D +V +W + I + S N V +++ +S D ++ W V
Sbjct: 557 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-----LNETTIVSAGQDSNIKFWNV 609
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 28/242 (11%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
HE + +K++ +G L S +D + VW + ERL D H
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-------------GHTGT 76
Query: 342 LIPIDVD-------KEKIDKTKSLRKSSDLTCVVL---PPKVFRLLEKPL-HEFQGHSSE 390
+ IDVD D + L S+ CV P V R+ P + F
Sbjct: 77 IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDN 136
Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY-VTSVAFNPVDDNYFISGSI 449
V+ S N + + + T L +V + ++ +H +VA Y I+G
Sbjct: 137 VMKNPGSINIYEIERDS-ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK 195
Query: 450 DGKVRIWEV-RRCQVVDYTDIRE-IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507
DGK+ ++V + VD D+ E +S + + PD I + N D+ Q+ ++
Sbjct: 196 DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK 255
Query: 508 NQ 509
+
Sbjct: 256 YE 257
>pdb|1XI6|A Chain A, Extragenic Suppressor From Pyrococcus Furiosus
Pfu-1862794- 001
Length = 262
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM-KFSLDGQYLASGG 303
PG+ G+R++ VR P +K S S G E + H T+ +L+ YLA G
Sbjct: 137 PGEGAFLNGKRIK-VRKTPDEKPSISFYSRGKGHEIVKHVKRTRTLGAIALELAYLAMGA 195
Query: 304 EDGTVRVWKVI 314
DG V V K +
Sbjct: 196 LDGVVDVRKYV 206
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 381 LHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSV 434
+ + GH + + +L + LLS S D +RLW + D + +F H + V S
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 435 AFNPVDDNYFISGSIDGKVRIWEV 458
++ + + +S +D +++W +
Sbjct: 168 DYDLLGEK-IMSCGMDHSLKLWRI 190
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 420 RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+C++ + H N + + F+P D N +S S D +R+W ++
Sbjct: 106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 381 LHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSV 434
+ + GH + + +L + LLS S D +RLW + D + +F H + V S
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 435 AFNPVDDNYFISGSIDGKVRIWEV 458
++ + + +S +D +++W +
Sbjct: 204 DYDLLGEK-IMSCGMDHSLKLWRI 226
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 420 RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+C++ + H N + + F+P D N +S S D +R+W ++
Sbjct: 142 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 381 LHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSV 434
+ + GH + + +L + LLS S D +RLW + D + +F H + V S
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 435 AFNPVDDNYFISGSIDGKVRIWEV 458
++ + + +S +D +++W +
Sbjct: 167 DYDLLGEK-IMSCGMDHSLKLWRI 189
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 420 RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+C++ + H N + + F+P D N +S S D +R+W ++
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 381 LHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSV 434
+ + GH + + +L + LLS S D +RLW + D + +F H + V S
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 435 AFNPVDDNYFISGSIDGKVRIWEV 458
++ + + +S +D +++W +
Sbjct: 167 DYDLLGEK-IMSCGMDHSLKLWRI 189
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 420 RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+C++ + H N + + F+P D N +S S D +R+W ++
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 381 LHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSV 434
+ + GH + + +L + LLS S D +RLW + D + +F H + V S
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 435 AFNPVDDNYFISGSIDGKVRIWEV 458
++ + + +S +D +++W +
Sbjct: 163 DYDLLGEK-IMSCGMDHSLKLWRI 185
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 420 RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+C++ + H N + + F+P D N +S S D +R+W ++
Sbjct: 101 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
N +TS A +P + Y I+GS G ++IW ++ V
Sbjct: 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV 98
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 247 DHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQ---EFLAHEGSILTMKFSLDGQYLASG 302
D LTL + +++ V + R LSS +Y G + L ++L + +G +
Sbjct: 97 DDLLTLAADLEKLK-SKVTRTERPLSSGVYMGNLSSQQLDQRRALLNLIGMTNGSQGSQA 155
Query: 303 GEDGTVRVWKVIEHERLD 320
G DG VRVW V E L+
Sbjct: 156 GRDGVVRVWDVKNAELLN 173
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 73 GFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISS-KLCE 131
GFI++Q +N + E+ VR+ LD+D N G L G G + ++ SI++ KL E
Sbjct: 14 GFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVG--LKINEISINNKKLVE 71
Query: 132 APE 134
E
Sbjct: 72 GEE 74
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 73 GFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISS-KLCE 131
GFI++Q +N + E+ VR+ LD+D N G L G G + ++ SI++ KL E
Sbjct: 14 GFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVG--LKINEISINNKKLVE 71
Query: 132 APE 134
E
Sbjct: 72 GEE 74
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 73 GFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISS-KLCE 131
GFI++Q +N + E+ VR+ LD+D N G L G G + ++ SI++ KL E
Sbjct: 13 GFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVG--LKINEISINNKKLVE 70
Query: 132 APE 134
E
Sbjct: 71 GEE 73
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 73 GFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISS-KLCE 131
GFI++Q +N + E+ VR+ LD+D N G L G G + ++ SI++ KL E
Sbjct: 13 GFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVG--LKINEISINNKKLVE 70
Query: 132 APE 134
E
Sbjct: 71 GEE 73
>pdb|3B2M|A Chain A, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes
pdb|3B2M|B Chain B, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes
pdb|3B2M|C Chain C, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes
Length = 295
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 136 LEHFTLKDHAACRIDDWGKGADLVVSDND 164
L HFTLKD + ++ + G D VV+++D
Sbjct: 219 LYHFTLKDGESIKVTNLPVGVDYVVTEDD 247
>pdb|3GLD|A Chain A, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes E117a Mutant
pdb|3GLD|B Chain B, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes E117a Mutant
pdb|3GLD|C Chain C, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes E117a Mutant
Length = 295
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 136 LEHFTLKDHAACRIDDWGKGADLVVSDND 164
L HFTLKD + ++ + G D VV+++D
Sbjct: 219 LYHFTLKDGESIKVTNLPVGVDYVVTEDD 247
>pdb|3GLE|A Chain A, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes N168a Mutant
pdb|3GLE|B Chain B, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes N168a Mutant
pdb|3GLE|C Chain C, Crystal Structure Of The Major Pilin From Streptococcus
Pyogenes N168a Mutant
Length = 295
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 136 LEHFTLKDHAACRIDDWGKGADLVVSDND 164
L HFTLKD + ++ + G D VV+++D
Sbjct: 219 LYHFTLKDGESIKVTNLPVGVDYVVTEDD 247
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
H VT FNP D + S+D V++W++R +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK 237
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
H VT FNP D + S+D V++W++R +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK 238
>pdb|3TMG|A Chain A, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|B Chain B, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|C Chain C, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|D Chain D, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
Length = 280
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311
E + + I ++ S+ QYLASG DGTV W
Sbjct: 40 EKMGYNAEIFSVTTSIMYQYLASGKIDGTVSSW 72
>pdb|3MWP|A Chain A, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|B Chain B, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|C Chain C, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWT|A Chain A, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|B Chain B, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|C Chain C, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MX2|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX5|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Utp
Length = 577
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ---EFLAHEGSILTMK 291
I R G+ T D L L + +++ ++ + + +Y G + L ++L M
Sbjct: 96 ILRVGTLT---SDDLLILAADLEKLKSKVIRTERPLSAGVYMGNLSSQQLDQRRALLNMI 152
Query: 292 FSLDGQYLASGGEDGTVRVWKVIEHERLD 320
G A G DG VRVW V E L+
Sbjct: 153 GMSGGNQGARAGRDGVVRVWDVKNAELLN 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,114,422
Number of Sequences: 62578
Number of extensions: 687221
Number of successful extensions: 2533
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1589
Number of HSP's gapped (non-prelim): 541
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)