Query 009614
Match_columns 531
No_of_seqs 700 out of 3328
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 15:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 1E-58 2.2E-63 476.4 31.0 477 1-531 1-512 (712)
2 KOG0271 Notchless-like WD40 re 100.0 4.9E-36 1.1E-40 282.6 22.9 274 226-530 106-461 (480)
3 KOG0271 Notchless-like WD40 re 100.0 3E-34 6.5E-39 270.6 20.9 262 227-498 149-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-34 5E-39 274.8 20.0 258 237-530 177-440 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 4.5E-34 9.8E-39 272.8 17.8 245 227-498 209-458 (459)
6 KOG0263 Transcription initiati 100.0 1.9E-33 4.1E-38 287.8 22.9 246 236-502 379-651 (707)
7 KOG0273 Beta-transducin family 100.0 4.3E-32 9.2E-37 262.4 26.5 245 236-509 236-491 (524)
8 KOG0286 G-protein beta subunit 100.0 4.2E-31 9.2E-36 241.7 28.2 266 228-530 48-325 (343)
9 KOG0279 G protein beta subunit 100.0 3.1E-31 6.6E-36 241.3 25.9 277 228-529 8-292 (315)
10 KOG0279 G protein beta subunit 100.0 1.6E-30 3.4E-35 236.7 24.6 247 227-500 55-313 (315)
11 KOG0291 WD40-repeat-containing 100.0 5.2E-30 1.1E-34 260.1 29.0 254 231-510 346-622 (893)
12 KOG0286 G-protein beta subunit 100.0 2.9E-29 6.3E-34 229.7 24.5 231 278-530 49-283 (343)
13 KOG0315 G-protein beta subunit 100.0 4.7E-29 1E-33 223.6 24.0 254 231-511 36-299 (311)
14 KOG0285 Pleiotropic regulator 100.0 2.2E-29 4.8E-34 235.9 21.8 280 220-529 133-418 (460)
15 KOG0295 WD40 repeat-containing 100.0 3.3E-29 7E-34 235.6 22.8 252 231-509 104-373 (406)
16 KOG0284 Polyadenylation factor 100.0 4E-30 8.7E-35 244.8 14.9 260 236-531 97-361 (464)
17 KOG0284 Polyadenylation factor 100.0 3.7E-29 8.1E-34 238.2 13.9 241 231-499 134-379 (464)
18 KOG0281 Beta-TrCP (transducin 100.0 2.5E-29 5.4E-34 234.6 11.1 253 242-529 202-458 (499)
19 cd00200 WD40 WD40 domain, foun 100.0 2.1E-26 4.5E-31 223.8 31.5 265 230-530 4-271 (289)
20 KOG0265 U5 snRNP-specific prot 100.0 7.3E-28 1.6E-32 221.4 19.3 210 225-503 37-249 (338)
21 KOG0318 WD40 repeat stress pro 100.0 1.5E-26 3.2E-31 226.8 29.5 269 230-530 185-540 (603)
22 KOG0316 Conserved WD40 repeat- 100.0 3.7E-27 8E-32 209.8 20.9 269 227-530 9-280 (307)
23 KOG0291 WD40-repeat-containing 100.0 1.4E-26 3.1E-31 235.3 26.8 267 236-530 308-592 (893)
24 KOG0273 Beta-transducin family 100.0 1.2E-26 2.6E-31 224.8 22.2 209 229-500 270-523 (524)
25 KOG0266 WD40 repeat-containing 100.0 1.8E-26 4E-31 241.3 25.6 251 235-511 159-420 (456)
26 KOG0295 WD40 repeat-containing 100.0 6.3E-27 1.4E-31 220.2 19.6 243 230-499 145-405 (406)
27 KOG0276 Vesicle coat complex C 99.9 5.7E-27 1.2E-31 233.6 19.4 250 234-509 12-266 (794)
28 KOG0282 mRNA splicing factor [ 99.9 1.3E-27 2.9E-32 232.2 14.4 268 228-530 207-484 (503)
29 PTZ00421 coronin; Provisional 99.9 9.5E-26 2.1E-30 235.4 29.2 216 230-508 70-298 (493)
30 KOG0263 Transcription initiati 99.9 1.1E-26 2.5E-31 238.1 21.6 204 230-461 446-651 (707)
31 KOG0275 Conserved WD40 repeat- 99.9 1.5E-26 3.3E-31 214.2 20.1 256 236-511 214-478 (508)
32 KOG0645 WD40 repeat protein [G 99.9 1E-25 2.2E-30 204.6 24.1 208 228-500 7-225 (312)
33 KOG0296 Angio-associated migra 99.9 1.5E-25 3.2E-30 211.1 23.4 255 227-509 56-365 (399)
34 KOG0646 WD40 repeat protein [G 99.9 2.6E-25 5.6E-30 215.6 23.9 292 142-530 15-329 (476)
35 KOG0645 WD40 repeat protein [G 99.9 2.2E-25 4.8E-30 202.4 21.4 260 147-500 39-311 (312)
36 PLN00181 protein SPA1-RELATED; 99.9 2.7E-24 5.8E-29 241.0 34.8 277 231-530 479-773 (793)
37 KOG0310 Conserved WD40 repeat- 99.9 1.3E-25 2.7E-30 218.9 20.5 220 231-530 64-289 (487)
38 KOG0292 Vesicle coat complex C 99.9 1.3E-25 2.9E-30 231.3 21.7 246 236-509 10-289 (1202)
39 KOG0315 G-protein beta subunit 99.9 2.9E-25 6.2E-30 199.3 21.0 212 248-530 11-225 (311)
40 KOG0319 WD40-repeat-containing 99.9 1.4E-25 2.9E-30 228.0 21.2 247 231-501 361-620 (775)
41 KOG0266 WD40 repeat-containing 99.9 3.9E-25 8.5E-30 231.3 24.8 248 228-500 196-454 (456)
42 KOG0293 WD40 repeat-containing 99.9 2.4E-25 5.2E-30 212.4 19.4 269 230-502 219-515 (519)
43 KOG0319 WD40-repeat-containing 99.9 7.1E-25 1.5E-29 222.8 23.3 250 236-509 324-586 (775)
44 KOG0641 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 186.2 28.0 259 236-512 33-314 (350)
45 KOG0318 WD40 repeat stress pro 99.9 2.5E-24 5.4E-29 211.2 25.9 248 231-505 55-355 (603)
46 KOG0643 Translation initiation 99.9 1.5E-24 3.2E-29 196.6 22.4 253 230-502 5-319 (327)
47 KOG0313 Microtubule binding pr 99.9 1.8E-24 3.9E-29 204.7 23.6 248 234-508 104-385 (423)
48 cd00200 WD40 WD40 domain, foun 99.9 7.5E-24 1.6E-28 205.7 28.3 237 234-498 50-289 (289)
49 PLN00181 protein SPA1-RELATED; 99.9 7.6E-24 1.7E-28 237.3 30.6 237 236-499 533-792 (793)
50 KOG0285 Pleiotropic regulator 99.9 3.4E-25 7.3E-30 207.9 16.2 209 277-507 144-355 (460)
51 KOG0640 mRNA cleavage stimulat 99.9 1.1E-24 2.3E-29 201.1 18.0 221 230-511 107-346 (430)
52 KOG0296 Angio-associated migra 99.9 2.3E-24 5.1E-29 203.1 20.5 262 230-500 101-398 (399)
53 PTZ00420 coronin; Provisional 99.9 2E-23 4.3E-28 219.2 29.3 231 229-530 68-316 (568)
54 KOG0276 Vesicle coat complex C 99.9 1.8E-24 4E-29 215.8 20.0 234 236-496 56-295 (794)
55 KOG1407 WD40 repeat protein [F 99.9 4.5E-24 9.8E-29 192.9 20.5 259 231-500 16-311 (313)
56 KOG0292 Vesicle coat complex C 99.9 5.2E-24 1.1E-28 219.7 23.3 256 220-500 32-321 (1202)
57 KOG0283 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 224.4 18.6 216 231-511 262-543 (712)
58 PTZ00421 coronin; Provisional 99.9 3E-23 6.4E-28 216.8 27.7 210 238-503 23-248 (493)
59 KOG0278 Serine/threonine kinas 99.9 1.9E-24 4.2E-29 194.0 15.2 202 234-505 99-302 (334)
60 PTZ00420 coronin; Provisional 99.9 1.3E-22 2.9E-27 213.0 29.5 193 253-508 50-257 (568)
61 KOG0299 U3 snoRNP-associated p 99.9 2.8E-23 6.1E-28 201.2 22.0 272 228-530 135-435 (479)
62 KOG0277 Peroxisomal targeting 99.9 5.5E-24 1.2E-28 191.6 15.4 237 238-499 63-308 (311)
63 KOG0306 WD40-repeat-containing 99.9 1.7E-23 3.7E-28 212.9 20.7 242 238-507 415-671 (888)
64 KOG0274 Cdc4 and related F-box 99.9 4.4E-23 9.5E-28 215.9 24.0 251 236-528 209-462 (537)
65 KOG0772 Uncharacterized conser 99.9 5.9E-24 1.3E-28 208.0 15.7 248 225-530 157-419 (641)
66 KOG0288 WD40 repeat protein Ti 99.9 1.3E-23 2.7E-28 200.9 17.3 268 230-531 170-442 (459)
67 KOG0316 Conserved WD40 repeat- 99.9 2.6E-23 5.6E-28 185.3 17.8 209 278-511 11-224 (307)
68 KOG0265 U5 snRNP-specific prot 99.9 9.1E-23 2E-27 188.0 21.9 240 230-498 85-336 (338)
69 KOG0305 Anaphase promoting com 99.9 1.4E-22 2.9E-27 205.0 24.2 238 235-502 217-463 (484)
70 KOG0289 mRNA splicing factor [ 99.9 3.7E-23 8.1E-28 198.7 18.5 201 241-511 225-430 (506)
71 KOG0281 Beta-TrCP (transducin 99.9 3.5E-24 7.5E-29 200.3 10.4 250 217-505 215-482 (499)
72 KOG0288 WD40 repeat protein Ti 99.9 4.1E-23 9E-28 197.4 17.7 239 227-497 211-458 (459)
73 KOG1332 Vesicle coat complex C 99.9 9.7E-23 2.1E-27 182.7 17.1 251 231-500 7-286 (299)
74 KOG0274 Cdc4 and related F-box 99.9 1.4E-22 3.1E-27 212.0 21.1 242 231-508 245-490 (537)
75 KOG0268 Sof1-like rRNA process 99.9 4.1E-23 8.9E-28 194.4 15.2 244 228-505 59-307 (433)
76 KOG0264 Nucleosome remodeling 99.9 3.6E-22 7.8E-27 193.6 21.3 251 234-501 123-405 (422)
77 KOG0973 Histone transcription 99.9 4.8E-22 1E-26 210.9 22.7 242 237-530 15-335 (942)
78 KOG0310 Conserved WD40 repeat- 99.9 4.6E-22 9.9E-27 194.2 20.8 219 234-529 25-247 (487)
79 KOG0294 WD40 repeat-containing 99.9 1.5E-21 3.3E-26 181.0 23.2 232 249-502 3-283 (362)
80 KOG0313 Microtubule binding pr 99.9 5.7E-22 1.2E-26 187.9 20.7 258 230-500 139-418 (423)
81 KOG0973 Histone transcription 99.9 3E-22 6.5E-27 212.4 21.0 261 227-503 61-358 (942)
82 KOG0275 Conserved WD40 repeat- 99.9 1.8E-23 3.8E-28 193.9 8.4 174 282-510 211-388 (508)
83 KOG0647 mRNA export protein (c 99.9 2.3E-21 4.9E-26 178.9 22.1 226 235-531 27-262 (347)
84 KOG0308 Conserved WD40 repeat- 99.9 4.3E-22 9.3E-27 200.0 18.6 241 245-502 35-287 (735)
85 KOG0278 Serine/threonine kinas 99.9 3.9E-22 8.4E-27 179.3 15.2 261 234-530 13-277 (334)
86 KOG0282 mRNA splicing factor [ 99.9 2.9E-22 6.2E-27 195.3 15.4 244 227-498 250-503 (503)
87 KOG1446 Histone H3 (Lys4) meth 99.9 2.2E-20 4.8E-25 173.9 26.7 260 234-530 13-285 (311)
88 KOG0641 WD40 repeat protein [G 99.9 1.6E-20 3.5E-25 166.5 24.5 250 231-500 85-349 (350)
89 KOG0305 Anaphase promoting com 99.9 6.6E-21 1.4E-25 192.8 24.0 252 241-530 183-441 (484)
90 KOG0267 Microtubule severing p 99.9 8.9E-23 1.9E-27 207.1 10.2 224 229-530 22-248 (825)
91 KOG0299 U3 snoRNP-associated p 99.9 5E-21 1.1E-25 185.6 21.2 228 233-489 200-444 (479)
92 KOG0277 Peroxisomal targeting 99.9 9.8E-21 2.1E-25 170.8 19.4 225 255-503 36-268 (311)
93 KOG2106 Uncharacterized conser 99.9 1.1E-19 2.4E-24 177.9 28.2 285 229-530 194-501 (626)
94 KOG0269 WD40 repeat-containing 99.9 1.4E-21 3.1E-26 199.9 14.5 237 241-499 93-339 (839)
95 KOG0289 mRNA splicing factor [ 99.9 3.4E-20 7.4E-25 178.5 22.7 244 228-499 254-505 (506)
96 KOG0643 Translation initiation 99.9 3.7E-20 7.9E-25 168.2 20.9 182 279-530 5-200 (327)
97 KOG0302 Ribosome Assembly prot 99.9 8E-21 1.7E-25 179.9 17.2 207 235-501 151-379 (440)
98 KOG0306 WD40-repeat-containing 99.9 5E-20 1.1E-24 187.9 23.9 252 231-509 369-631 (888)
99 KOG0640 mRNA cleavage stimulat 99.9 4.7E-21 1E-25 177.1 15.0 207 228-499 165-425 (430)
100 KOG2445 Nuclear pore complex c 99.9 7.9E-20 1.7E-24 169.1 22.9 255 231-503 9-321 (361)
101 KOG0301 Phospholipase A2-activ 99.9 4.4E-20 9.6E-25 187.0 22.3 225 241-502 64-290 (745)
102 KOG1446 Histone H3 (Lys4) meth 99.9 3E-19 6.5E-24 166.4 25.7 220 275-514 5-231 (311)
103 KOG0301 Phospholipase A2-activ 99.9 3.6E-20 7.9E-25 187.6 21.1 246 231-511 10-258 (745)
104 KOG1274 WD40 repeat protein [G 99.9 1.3E-19 2.8E-24 188.9 25.6 239 234-501 12-263 (933)
105 KOG1408 WD40 repeat protein [F 99.9 2.7E-20 5.9E-25 188.4 19.9 247 233-501 457-714 (1080)
106 KOG0308 Conserved WD40 repeat- 99.9 1.6E-20 3.4E-25 188.8 17.3 256 228-500 66-327 (735)
107 KOG4283 Transcription-coupled 99.9 3.9E-20 8.4E-25 170.1 18.4 213 231-462 39-279 (397)
108 KOG0300 WD40 repeat-containing 99.9 1E-20 2.3E-25 175.2 14.6 244 229-503 142-389 (481)
109 KOG0639 Transducin-like enhanc 99.8 1.3E-20 2.8E-25 184.0 15.6 247 236-506 420-669 (705)
110 KOG0772 Uncharacterized conser 99.8 5.1E-20 1.1E-24 180.6 17.0 219 236-511 215-456 (641)
111 KOG0650 WD40 repeat nucleolar 99.8 1.6E-20 3.4E-25 187.1 13.5 299 174-497 337-732 (733)
112 KOG0264 Nucleosome remodeling 99.8 1.1E-19 2.4E-24 176.4 18.7 244 282-530 122-383 (422)
113 KOG1539 WD repeat protein [Gen 99.8 3.1E-19 6.6E-24 184.2 22.7 281 235-531 244-628 (910)
114 KOG0302 Ribosome Assembly prot 99.8 9.2E-20 2E-24 172.8 17.0 210 223-497 199-435 (440)
115 KOG2096 WD40 repeat protein [G 99.8 1.8E-19 3.9E-24 167.3 18.3 211 278-500 80-308 (420)
116 KOG0300 WD40 repeat-containing 99.8 9.9E-20 2.2E-24 168.8 16.5 255 228-502 183-478 (481)
117 KOG4328 WD40 protein [Function 99.8 2.8E-19 6E-24 173.4 19.7 257 230-509 181-459 (498)
118 KOG4378 Nuclear protein COP1 [ 99.8 1.2E-19 2.5E-24 177.2 17.1 215 240-530 84-303 (673)
119 KOG0293 WD40 repeat-containing 99.8 7.3E-20 1.6E-24 175.1 15.3 170 274-503 214-387 (519)
120 KOG1273 WD40 repeat protein [G 99.8 4.8E-19 1E-23 164.3 20.1 248 239-500 27-322 (405)
121 KOG0269 WD40 repeat-containing 99.8 5.9E-20 1.3E-24 188.1 15.5 209 236-507 40-257 (839)
122 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 9.5E-18 2.1E-22 165.9 30.2 254 238-530 33-300 (300)
123 KOG0267 Microtubule severing p 99.8 1.1E-20 2.3E-25 192.0 8.5 193 230-492 65-260 (825)
124 KOG2096 WD40 repeat protein [G 99.8 1.1E-18 2.3E-23 162.2 20.9 249 230-498 81-400 (420)
125 KOG2055 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 168.9 22.1 266 235-530 213-492 (514)
126 KOG0270 WD40 repeat-containing 99.8 3.6E-19 7.9E-24 172.1 16.7 241 246-505 191-454 (463)
127 KOG1036 Mitotic spindle checkp 99.8 3.6E-18 7.7E-23 158.5 22.1 222 235-531 13-243 (323)
128 KOG1407 WD40 repeat protein [F 99.8 1.2E-18 2.6E-23 158.0 18.3 233 278-511 14-272 (313)
129 KOG0307 Vesicle coat complex C 99.8 2.7E-19 5.9E-24 190.9 16.2 248 236-503 65-330 (1049)
130 KOG1007 WD repeat protein TSSC 99.8 1.4E-18 2.9E-23 159.6 18.1 279 142-500 38-361 (370)
131 KOG0642 Cell-cycle nuclear pro 99.8 6.6E-19 1.4E-23 175.0 17.0 242 214-509 274-570 (577)
132 KOG1408 WD40 repeat protein [F 99.8 7.6E-18 1.6E-22 170.9 21.4 257 249-530 394-693 (1080)
133 KOG0268 Sof1-like rRNA process 99.8 9.1E-19 2E-23 165.3 13.7 241 229-503 103-348 (433)
134 KOG0303 Actin-binding protein 99.8 3.7E-18 8E-23 162.8 16.9 197 246-501 43-250 (472)
135 KOG2048 WD40 repeat protein [G 99.8 1.2E-16 2.6E-21 162.1 26.7 242 236-504 26-279 (691)
136 KOG0294 WD40 repeat-containing 99.8 1.5E-17 3.2E-22 154.7 18.3 220 228-478 76-305 (362)
137 KOG4283 Transcription-coupled 99.8 9.1E-18 2E-22 154.6 16.7 207 281-507 40-283 (397)
138 KOG1274 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 173.5 20.5 202 231-497 92-297 (933)
139 KOG0650 WD40 repeat nucleolar 99.8 1.2E-17 2.5E-22 166.8 16.9 242 278-530 394-660 (733)
140 KOG1539 WD repeat protein [Gen 99.8 1.1E-17 2.5E-22 172.7 17.4 195 239-501 452-649 (910)
141 KOG1332 Vesicle coat complex C 99.8 1.7E-17 3.7E-22 149.2 15.8 225 225-460 46-287 (299)
142 KOG1036 Mitotic spindle checkp 99.8 6.5E-17 1.4E-21 150.2 20.1 224 236-490 55-294 (323)
143 KOG2106 Uncharacterized conser 99.8 1.8E-16 4E-21 155.5 23.6 277 230-530 99-457 (626)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 5.9E-16 1.3E-20 153.1 26.9 192 247-510 1-197 (300)
145 KOG1063 RNA polymerase II elon 99.7 3.8E-17 8.3E-22 165.8 18.0 289 225-531 351-675 (764)
146 KOG1009 Chromatin assembly com 99.7 2.7E-17 5.8E-22 157.7 15.6 242 236-531 14-293 (434)
147 KOG1538 Uncharacterized conser 99.7 7.1E-17 1.5E-21 162.7 19.2 254 237-501 14-294 (1081)
148 KOG0321 WD40 repeat-containing 99.7 4.6E-17 1E-21 163.8 17.0 255 228-530 93-370 (720)
149 KOG0639 Transducin-like enhanc 99.7 4E-17 8.7E-22 159.8 16.1 234 237-499 467-703 (705)
150 KOG0270 WD40 repeat-containing 99.7 4.8E-17 1E-21 157.6 16.3 261 174-464 186-454 (463)
151 KOG0303 Actin-binding protein 99.7 2.5E-16 5.4E-21 150.5 20.7 213 228-504 74-298 (472)
152 KOG1587 Cytoplasmic dynein int 99.7 2E-16 4.4E-21 164.7 21.2 250 236-502 243-518 (555)
153 KOG0647 mRNA export protein (c 99.7 1.8E-16 4E-21 146.7 17.8 223 233-489 70-312 (347)
154 KOG2055 WD40 repeat protein [G 99.7 5.2E-16 1.1E-20 151.0 20.6 227 284-530 213-445 (514)
155 KOG1063 RNA polymerase II elon 99.7 9.4E-17 2E-21 163.0 16.1 207 229-500 519-763 (764)
156 KOG2445 Nuclear pore complex c 99.7 2E-15 4.3E-20 140.2 22.2 206 281-501 10-257 (361)
157 KOG1188 WD40 repeat protein [G 99.7 2.9E-16 6.2E-21 147.7 16.8 194 248-508 41-250 (376)
158 KOG1445 Tumor-specific antigen 99.7 1.7E-16 3.6E-21 159.3 16.1 115 390-504 629-754 (1012)
159 KOG0322 G-protein beta subunit 99.7 4.1E-16 8.8E-21 141.8 16.8 251 229-499 8-322 (323)
160 KOG0649 WD40 repeat protein [G 99.7 4.5E-15 9.8E-20 133.6 22.8 240 240-509 15-282 (325)
161 KOG1273 WD40 repeat protein [G 99.7 5.2E-16 1.1E-20 144.3 17.3 164 287-512 26-195 (405)
162 KOG2919 Guanine nucleotide-bin 99.7 3.4E-15 7.3E-20 139.5 22.2 266 240-531 54-351 (406)
163 KOG1524 WD40 repeat-containing 99.7 3.5E-16 7.6E-21 154.4 16.2 213 248-503 76-289 (737)
164 KOG1034 Transcriptional repres 99.7 1.9E-16 4.1E-21 148.1 11.1 211 246-529 104-362 (385)
165 KOG0646 WD40 repeat protein [G 99.7 6.1E-16 1.3E-20 150.9 14.8 212 231-459 119-350 (476)
166 KOG1310 WD40 repeat protein [G 99.7 8.5E-16 1.8E-20 152.2 15.1 234 220-511 32-314 (758)
167 KOG0321 WD40 repeat-containing 99.7 1.1E-15 2.4E-20 153.9 15.9 194 247-502 64-303 (720)
168 KOG4328 WD40 protein [Function 99.7 2.6E-15 5.6E-20 146.1 15.8 208 276-500 178-399 (498)
169 KOG0290 Conserved WD40 repeat- 99.7 4E-15 8.8E-20 137.1 16.2 232 235-530 96-345 (364)
170 KOG0644 Uncharacterized conser 99.6 4.1E-16 8.8E-21 161.0 10.2 251 229-506 184-474 (1113)
171 KOG1445 Tumor-specific antigen 99.6 1.5E-15 3.3E-20 152.5 13.6 201 242-501 586-799 (1012)
172 KOG1007 WD repeat protein TSSC 99.6 5.7E-15 1.2E-19 136.0 15.9 209 235-501 63-290 (370)
173 KOG1009 Chromatin assembly com 99.6 1.6E-14 3.5E-19 138.7 18.5 273 227-505 57-377 (434)
174 COG2319 FOG: WD40 repeat [Gene 99.6 5.4E-13 1.2E-17 136.4 31.3 251 231-509 61-323 (466)
175 KOG0771 Prolactin regulatory e 99.6 8.3E-15 1.8E-19 141.7 15.5 201 239-460 148-355 (398)
176 KOG2048 WD40 repeat protein [G 99.6 1.4E-13 3.1E-18 140.0 24.0 183 284-528 25-212 (691)
177 KOG1034 Transcriptional repres 99.6 8.1E-15 1.8E-19 137.3 13.4 231 229-500 129-383 (385)
178 KOG0307 Vesicle coat complex C 99.6 2.1E-15 4.5E-20 161.6 10.3 213 230-462 111-330 (1049)
179 KOG0771 Prolactin regulatory e 99.6 1E-14 2.2E-19 141.1 14.1 173 288-531 148-335 (398)
180 KOG1523 Actin-related protein 99.6 5.3E-14 1.1E-18 131.6 17.1 205 235-503 10-239 (361)
181 KOG4378 Nuclear protein COP1 [ 99.6 5.5E-14 1.2E-18 138.0 17.3 184 230-482 116-305 (673)
182 KOG0642 Cell-cycle nuclear pro 99.6 3.7E-14 8E-19 141.5 14.6 227 223-464 332-566 (577)
183 KOG2919 Guanine nucleotide-bin 99.6 1.1E-13 2.4E-18 129.5 16.1 223 243-491 119-361 (406)
184 KOG4227 WD40 repeat protein [G 99.6 3E-13 6.5E-18 129.2 18.9 250 231-500 52-387 (609)
185 COG2319 FOG: WD40 repeat [Gene 99.6 6.6E-12 1.4E-16 128.3 30.5 233 244-503 119-362 (466)
186 KOG1517 Guanine nucleotide bin 99.5 1.3E-13 2.9E-18 146.0 17.5 242 246-504 1122-1385(1387)
187 KOG1240 Protein kinase contain 99.5 9.2E-13 2E-17 141.9 23.9 278 220-505 1030-1339(1431)
188 PRK01742 tolB translocation pr 99.5 4.8E-13 1.1E-17 139.6 21.0 216 231-530 199-425 (429)
189 KOG1517 Guanine nucleotide bin 99.5 6E-13 1.3E-17 141.2 20.8 277 238-530 1067-1361(1387)
190 PF08662 eIF2A: Eukaryotic tra 99.5 1.3E-12 2.8E-17 120.7 20.4 117 388-509 59-187 (194)
191 KOG2394 WD40 protein DMR-N9 [G 99.5 4.3E-13 9.3E-18 133.1 17.1 226 243-506 181-458 (636)
192 KOG4227 WD40 repeat protein [G 99.5 2E-13 4.2E-18 130.5 14.0 168 278-502 50-227 (609)
193 KOG1188 WD40 repeat protein [G 99.5 2.3E-13 4.9E-18 128.4 14.1 205 231-500 66-346 (376)
194 KOG2110 Uncharacterized conser 99.5 2.2E-11 4.7E-16 116.3 26.8 218 256-501 67-331 (391)
195 KOG2110 Uncharacterized conser 99.5 6.7E-12 1.5E-16 119.7 23.2 233 239-503 9-251 (391)
196 KOG1310 WD40 repeat protein [G 99.5 5.2E-14 1.1E-18 139.7 8.6 163 276-499 42-230 (758)
197 KOG1523 Actin-related protein 99.5 9.3E-13 2E-17 123.3 16.1 159 283-501 9-177 (361)
198 KOG1963 WD40 repeat protein [G 99.5 4.5E-12 9.8E-17 132.9 22.5 280 241-530 22-355 (792)
199 KOG3881 Uncharacterized conser 99.5 2.4E-12 5.1E-17 123.6 18.5 204 248-509 116-329 (412)
200 PRK03629 tolB translocation pr 99.5 1.2E-11 2.6E-16 128.9 25.0 214 235-530 198-427 (429)
201 PRK11028 6-phosphogluconolacto 99.5 8.8E-11 1.9E-15 118.5 28.7 245 238-504 37-310 (330)
202 PRK04922 tolB translocation pr 99.4 1.7E-11 3.7E-16 128.1 23.9 199 231-502 199-413 (433)
203 KOG1587 Cytoplasmic dynein int 99.4 6.9E-12 1.5E-16 131.1 20.4 229 257-503 222-475 (555)
204 PF08662 eIF2A: Eukaryotic tra 99.4 1.1E-11 2.3E-16 114.5 19.4 151 241-463 11-183 (194)
205 KOG0290 Conserved WD40 repeat- 99.4 5.2E-12 1.1E-16 116.8 16.6 196 241-455 156-361 (364)
206 PRK05137 tolB translocation pr 99.4 3.7E-11 7.9E-16 125.8 24.4 201 231-504 197-416 (435)
207 KOG0649 WD40 repeat protein [G 99.4 3.4E-11 7.4E-16 108.8 19.9 197 236-497 115-313 (325)
208 KOG1272 WD40-repeat-containing 99.4 6.3E-13 1.4E-17 129.8 9.4 253 240-530 134-389 (545)
209 KOG2111 Uncharacterized conser 99.4 1.6E-10 3.4E-15 108.5 24.7 178 256-460 74-257 (346)
210 KOG1524 WD40 repeat-containing 99.4 2.7E-12 5.9E-17 127.3 13.6 223 282-530 12-237 (737)
211 KOG2139 WD40 repeat protein [G 99.4 1.5E-11 3.3E-16 116.9 18.0 199 241-500 104-309 (445)
212 KOG1538 Uncharacterized conser 99.4 4.3E-11 9.4E-16 121.6 22.2 209 229-458 47-292 (1081)
213 PRK11028 6-phosphogluconolacto 99.4 1.8E-10 3.9E-15 116.2 26.7 228 251-501 6-259 (330)
214 KOG0644 Uncharacterized conser 99.4 7E-13 1.5E-17 137.5 8.7 214 273-509 179-435 (1113)
215 PRK02889 tolB translocation pr 99.4 8.5E-11 1.8E-15 122.6 24.0 200 234-505 194-407 (427)
216 KOG2394 WD40 protein DMR-N9 [G 99.4 1.7E-11 3.7E-16 122.0 17.5 134 388-530 219-384 (636)
217 KOG2111 Uncharacterized conser 99.4 8.5E-11 1.8E-15 110.3 20.4 231 240-504 10-260 (346)
218 KOG1354 Serine/threonine prote 99.4 2.2E-11 4.8E-16 115.1 16.4 246 235-511 25-313 (433)
219 KOG0322 G-protein beta subunit 99.4 4E-12 8.6E-17 116.1 10.5 151 249-458 167-322 (323)
220 KOG1963 WD40 repeat protein [G 99.4 1.3E-10 2.8E-15 122.1 22.7 215 238-515 163-390 (792)
221 PRK01742 tolB translocation pr 99.3 5.8E-11 1.3E-15 124.0 19.7 174 256-505 183-366 (429)
222 PRK05137 tolB translocation pr 99.3 3.2E-10 6.8E-15 118.8 24.8 176 256-503 181-369 (435)
223 KOG1272 WD40-repeat-containing 99.3 3.7E-12 8E-17 124.5 8.7 199 286-509 131-332 (545)
224 KOG1334 WD40 repeat protein [G 99.3 8.2E-12 1.8E-16 122.9 10.5 267 230-503 137-469 (559)
225 KOG2321 WD40 repeat protein [G 99.3 1.5E-10 3.2E-15 116.2 19.5 234 237-509 53-311 (703)
226 PRK04922 tolB translocation pr 99.3 2.3E-10 5E-15 119.7 21.7 177 257-505 184-373 (433)
227 PRK03629 tolB translocation pr 99.3 6.9E-10 1.5E-14 115.7 24.8 178 256-505 178-368 (429)
228 KOG0974 WD-repeat protein WDR6 99.3 8.4E-11 1.8E-15 125.5 17.5 199 285-502 88-290 (967)
229 PF02239 Cytochrom_D1: Cytochr 99.3 9.6E-10 2.1E-14 111.7 24.1 245 238-509 39-356 (369)
230 TIGR02800 propeller_TolB tol-p 99.3 7.9E-10 1.7E-14 115.3 24.3 192 237-501 191-398 (417)
231 TIGR02800 propeller_TolB tol-p 99.3 1.3E-09 2.8E-14 113.7 23.8 177 256-504 169-358 (417)
232 PRK02889 tolB translocation pr 99.2 1.2E-09 2.6E-14 114.0 23.0 177 257-505 176-365 (427)
233 KOG1409 Uncharacterized conser 99.2 4.8E-10 1E-14 106.3 17.7 225 230-460 19-271 (404)
234 PRK00178 tolB translocation pr 99.2 2E-09 4.4E-14 112.7 24.4 195 235-502 198-408 (430)
235 KOG4497 Uncharacterized conser 99.2 2.4E-09 5.3E-14 100.9 20.7 255 236-505 49-396 (447)
236 KOG2139 WD40 repeat protein [G 99.2 2.7E-09 5.9E-14 101.8 20.8 204 236-505 141-388 (445)
237 PRK04792 tolB translocation pr 99.2 4.1E-09 8.8E-14 110.5 24.4 215 234-530 216-446 (448)
238 KOG4497 Uncharacterized conser 99.2 5.2E-10 1.1E-14 105.3 14.9 193 241-505 14-245 (447)
239 KOG2041 WD40 repeat protein [G 99.2 9.1E-10 2E-14 113.0 17.5 262 238-528 17-316 (1189)
240 KOG2321 WD40 repeat protein [G 99.2 7E-10 1.5E-14 111.4 16.3 193 249-501 148-344 (703)
241 KOG1240 Protein kinase contain 99.2 9E-10 1.9E-14 119.3 18.1 190 279-530 1043-1248(1431)
242 KOG4190 Uncharacterized conser 99.2 8.5E-11 1.8E-15 117.1 9.6 219 228-507 728-955 (1034)
243 KOG3881 Uncharacterized conser 99.2 5E-10 1.1E-14 107.8 13.9 177 244-482 157-343 (412)
244 KOG1334 WD40 repeat protein [G 99.2 1.8E-10 3.9E-15 113.5 11.1 208 277-499 135-365 (559)
245 PRK01029 tolB translocation pr 99.1 9.7E-09 2.1E-13 106.8 24.0 115 390-505 282-408 (428)
246 TIGR02658 TTQ_MADH_Hv methylam 99.1 7.6E-08 1.7E-12 95.9 28.1 241 242-508 52-338 (352)
247 KOG4547 WD40 repeat-containing 99.1 4.5E-09 9.9E-14 106.4 18.6 181 294-529 3-193 (541)
248 KOG0974 WD-repeat protein WDR6 99.1 9.8E-10 2.1E-14 117.6 14.1 149 241-460 139-289 (967)
249 KOG1064 RAVE (regulator of V-A 99.1 2.4E-10 5.2E-15 127.5 9.3 200 232-511 2205-2409(2439)
250 PF02239 Cytochrom_D1: Cytochr 99.1 6.6E-08 1.4E-12 98.3 25.9 188 251-509 10-211 (369)
251 PRK00178 tolB translocation pr 99.1 2.7E-08 5.8E-13 104.2 23.1 176 258-505 180-368 (430)
252 PRK04792 tolB translocation pr 99.1 3E-08 6.5E-13 104.0 22.9 176 258-505 199-387 (448)
253 KOG0280 Uncharacterized conser 99.0 9.3E-09 2E-13 95.8 16.2 229 255-505 44-289 (339)
254 KOG2315 Predicted translation 99.0 6.3E-08 1.4E-12 97.6 22.5 243 241-506 131-395 (566)
255 KOG4547 WD40 repeat-containing 99.0 2.4E-08 5.3E-13 101.2 19.2 114 385-501 99-221 (541)
256 PF10282 Lactonase: Lactonase, 99.0 2.6E-06 5.7E-11 86.4 33.2 250 239-509 40-333 (345)
257 KOG0280 Uncharacterized conser 99.0 9.2E-09 2E-13 95.8 12.8 193 240-497 126-330 (339)
258 COG5170 CDC55 Serine/threonine 98.9 6.2E-09 1.3E-13 97.5 11.0 250 235-509 26-319 (460)
259 COG5354 Uncharacterized protei 98.9 1.9E-07 4.2E-12 93.1 21.4 206 285-505 174-400 (561)
260 PLN02919 haloacid dehalogenase 98.9 4.7E-07 1E-11 103.8 27.7 227 238-513 626-901 (1057)
261 PF15492 Nbas_N: Neuroblastoma 98.9 8.1E-07 1.8E-11 83.2 23.8 249 241-513 3-272 (282)
262 KOG2315 Predicted translation 98.9 7.1E-07 1.5E-11 90.2 23.8 257 240-510 39-354 (566)
263 KOG3914 WD repeat protein WDR4 98.8 4.4E-08 9.6E-13 95.1 11.9 79 384-464 147-228 (390)
264 PRK01029 tolB translocation pr 98.8 5.4E-07 1.2E-11 93.9 20.8 180 239-482 234-426 (428)
265 KOG3914 WD repeat protein WDR4 98.8 6.4E-08 1.4E-12 94.0 12.5 105 404-510 127-233 (390)
266 KOG1354 Serine/threonine prote 98.8 7.8E-08 1.7E-12 91.5 12.4 200 248-504 99-363 (433)
267 KOG4532 WD40-like repeat conta 98.8 2E-06 4.4E-11 79.4 20.6 138 391-529 161-311 (344)
268 PRK04043 tolB translocation pr 98.7 3.9E-06 8.5E-11 87.0 24.9 190 239-503 191-403 (419)
269 KOG4190 Uncharacterized conser 98.7 1.9E-08 4E-13 100.7 7.3 174 278-508 729-914 (1034)
270 KOG2041 WD40 repeat protein [G 98.7 8.5E-08 1.8E-12 98.8 10.8 171 284-502 14-188 (1189)
271 PF04762 IKI3: IKI3 family; I 98.7 6.5E-06 1.4E-10 92.9 25.9 248 236-511 76-344 (928)
272 KOG2695 WD40 repeat protein [G 98.7 9.2E-08 2E-12 91.1 9.0 125 387-511 251-387 (425)
273 KOG1409 Uncharacterized conser 98.6 5.9E-07 1.3E-11 85.7 13.9 76 427-503 196-273 (404)
274 KOG0882 Cyclophilin-related pe 98.6 4.9E-07 1.1E-11 88.9 13.3 246 243-508 16-313 (558)
275 KOG2314 Translation initiation 98.6 2.6E-06 5.6E-11 86.0 18.2 112 388-502 445-575 (698)
276 COG5354 Uncharacterized protei 98.6 1.1E-05 2.3E-10 80.9 21.4 235 237-502 34-308 (561)
277 PLN02919 haloacid dehalogenase 98.6 2.7E-05 5.9E-10 89.5 28.0 221 239-506 571-839 (1057)
278 COG4946 Uncharacterized protei 98.6 1.1E-05 2.5E-10 80.0 21.1 171 246-490 331-508 (668)
279 PF04762 IKI3: IKI3 family; I 98.6 1.4E-05 3E-10 90.2 24.9 252 234-502 119-458 (928)
280 PF10282 Lactonase: Lactonase, 98.6 7.8E-05 1.7E-09 75.6 28.0 231 257-507 13-284 (345)
281 KOG0309 Conserved WD40 repeat- 98.6 4.4E-07 9.5E-12 94.1 11.3 234 245-501 79-340 (1081)
282 PF08450 SGL: SMP-30/Gluconola 98.6 7.6E-05 1.6E-09 71.8 26.4 207 241-529 5-233 (246)
283 KOG1832 HIV-1 Vpr-binding prot 98.5 2.8E-08 6E-13 104.5 2.4 198 229-509 1095-1300(1516)
284 PF07433 DUF1513: Protein of u 98.5 4.7E-05 1E-09 73.7 24.0 246 239-498 8-283 (305)
285 PF00400 WD40: WD domain, G-be 98.5 2.4E-07 5.2E-12 61.3 5.9 36 277-312 4-39 (39)
286 COG4946 Uncharacterized protei 98.5 3.5E-05 7.5E-10 76.7 21.6 121 386-507 357-484 (668)
287 KOG4714 Nucleoporin [Nuclear s 98.4 2.6E-06 5.6E-11 78.4 12.0 109 390-498 181-316 (319)
288 KOG1064 RAVE (regulator of V-A 98.4 6.5E-07 1.4E-11 101.0 9.7 165 280-510 2204-2376(2439)
289 COG2706 3-carboxymuconate cycl 98.4 0.00072 1.6E-08 65.7 28.8 247 240-506 44-329 (346)
290 KOG1275 PAB-dependent poly(A) 98.4 4.4E-06 9.6E-11 88.9 14.9 181 246-498 146-340 (1118)
291 COG2706 3-carboxymuconate cycl 98.4 0.00021 4.5E-09 69.3 24.8 182 256-502 15-223 (346)
292 KOG1912 WD40 repeat protein [G 98.4 5.6E-06 1.2E-10 86.6 15.1 257 247-510 79-465 (1062)
293 KOG1912 WD40 repeat protein [G 98.4 1.3E-05 2.8E-10 84.0 17.0 205 239-514 19-274 (1062)
294 PRK04043 tolB translocation pr 98.4 6.5E-05 1.4E-09 77.9 22.1 114 389-505 233-362 (419)
295 TIGR03300 assembly_YfgL outer 98.3 0.00015 3.3E-09 74.5 23.5 236 246-510 104-348 (377)
296 KOG4714 Nucleoporin [Nuclear s 98.3 5.9E-06 1.3E-10 76.1 11.2 216 280-503 31-257 (319)
297 PF00400 WD40: WD domain, G-be 98.3 1.9E-06 4.2E-11 56.9 5.9 37 379-415 2-39 (39)
298 KOG2695 WD40 repeat protein [G 98.3 4.2E-06 9.1E-11 80.0 9.6 156 247-471 225-388 (425)
299 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.002 4.2E-08 64.6 28.9 86 435-530 200-308 (352)
300 KOG0309 Conserved WD40 repeat- 98.3 4.3E-06 9.3E-11 87.0 10.1 202 284-502 24-234 (1081)
301 PF13360 PQQ_2: PQQ-like domai 98.3 0.00022 4.8E-09 67.9 21.3 217 256-507 2-237 (238)
302 KOG3617 WD40 and TPR repeat-co 98.2 2E-05 4.3E-10 83.3 14.4 72 239-317 63-134 (1416)
303 KOG2066 Vacuolar assembly/sort 98.2 0.00016 3.5E-09 76.5 19.8 177 237-500 41-233 (846)
304 PF11768 DUF3312: Protein of u 98.2 4.4E-05 9.5E-10 78.6 15.0 91 411-503 238-332 (545)
305 KOG4532 WD40-like repeat conta 98.1 0.00053 1.2E-08 63.8 19.5 227 246-500 83-331 (344)
306 COG5170 CDC55 Serine/threonine 98.1 2.4E-05 5.1E-10 73.9 10.8 168 284-503 26-255 (460)
307 KOG2114 Vacuolar assembly/sort 98.1 0.00046 1E-08 73.7 21.2 209 241-508 29-251 (933)
308 TIGR03300 assembly_YfgL outer 98.0 0.00075 1.6E-08 69.4 21.3 228 246-508 64-305 (377)
309 KOG1008 Uncharacterized conser 98.0 1.7E-06 3.6E-11 88.9 0.7 191 246-500 69-275 (783)
310 PF11768 DUF3312: Protein of u 98.0 0.00072 1.6E-08 69.8 19.1 95 386-482 257-369 (545)
311 KOG1920 IkappaB kinase complex 97.9 0.00094 2E-08 74.0 20.5 246 236-509 69-331 (1265)
312 KOG2066 Vacuolar assembly/sort 97.9 0.00012 2.5E-09 77.6 13.1 108 399-510 82-197 (846)
313 KOG1645 RING-finger-containing 97.9 0.00044 9.6E-09 67.8 16.0 240 234-500 192-461 (463)
314 KOG1832 HIV-1 Vpr-binding prot 97.9 1.3E-05 2.9E-10 85.0 4.5 181 271-522 1088-1280(1516)
315 KOG2314 Translation initiation 97.8 9.7E-05 2.1E-09 74.9 10.2 128 391-530 213-356 (698)
316 PF15492 Nbas_N: Neuroblastoma 97.8 0.0022 4.8E-08 60.6 18.2 191 241-464 49-264 (282)
317 PF08450 SGL: SMP-30/Gluconola 97.8 0.0097 2.1E-07 57.1 23.1 108 391-501 42-165 (246)
318 PF08596 Lgl_C: Lethal giant l 97.8 0.0016 3.5E-08 66.7 18.0 245 238-491 4-327 (395)
319 PF13360 PQQ_2: PQQ-like domai 97.8 0.0013 2.7E-08 62.7 16.4 111 398-510 35-150 (238)
320 PRK11138 outer membrane biogen 97.7 0.0095 2.1E-07 61.6 23.7 236 246-510 119-363 (394)
321 KOG1275 PAB-dependent poly(A) 97.7 0.00033 7.1E-09 75.2 11.9 144 242-458 182-341 (1118)
322 PF06433 Me-amine-dh_H: Methyl 97.7 0.014 3.1E-07 57.4 22.0 245 241-509 41-329 (342)
323 PF06977 SdiA-regulated: SdiA- 97.7 0.023 5.1E-07 54.2 23.1 206 232-497 18-247 (248)
324 PF08596 Lgl_C: Lethal giant l 97.6 0.014 3E-07 59.9 22.1 152 286-458 3-172 (395)
325 KOG1645 RING-finger-containing 97.6 0.00039 8.4E-09 68.2 9.6 82 381-462 186-269 (463)
326 KOG3621 WD40 repeat-containing 97.6 0.0043 9.4E-08 65.2 17.7 75 240-315 81-155 (726)
327 PF07433 DUF1513: Protein of u 97.6 0.012 2.6E-07 57.2 19.6 196 241-454 56-280 (305)
328 KOG0882 Cyclophilin-related pe 97.6 0.0005 1.1E-08 68.3 10.2 208 283-511 8-242 (558)
329 PF00780 CNH: CNH domain; Int 97.5 0.053 1.1E-06 52.9 24.6 229 244-510 4-265 (275)
330 KOG4640 Anaphase-promoting com 97.5 0.00047 1E-08 71.4 9.4 81 427-508 19-100 (665)
331 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.012 2.6E-07 48.0 15.0 99 391-495 2-109 (111)
332 PF04053 Coatomer_WDAD: Coatom 97.4 0.0056 1.2E-07 63.6 16.5 106 390-502 70-175 (443)
333 KOG3617 WD40 and TPR repeat-co 97.4 0.00028 6.1E-09 75.0 6.3 107 392-500 19-131 (1416)
334 PF04841 Vps16_N: Vps16, N-ter 97.4 0.05 1.1E-06 56.4 22.8 69 440-511 189-257 (410)
335 PRK02888 nitrous-oxide reducta 97.4 0.0094 2E-07 63.3 17.2 102 397-501 285-405 (635)
336 KOG1008 Uncharacterized conser 97.4 7E-05 1.5E-09 77.3 1.5 141 385-531 99-254 (783)
337 KOG1920 IkappaB kinase complex 97.3 0.015 3.2E-07 65.0 18.7 209 234-458 108-364 (1265)
338 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.057 1.2E-06 50.5 19.7 71 246-324 62-133 (354)
339 smart00320 WD40 WD40 repeats. 97.3 0.00055 1.2E-08 43.3 4.9 35 278-312 6-40 (40)
340 KOG3621 WD40 repeat-containing 97.3 0.00087 1.9E-08 70.3 8.5 110 391-501 36-155 (726)
341 KOG4640 Anaphase-promoting com 97.2 0.0015 3.3E-08 67.7 9.4 91 388-480 20-115 (665)
342 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.03 6.5E-07 45.7 14.9 66 388-455 42-110 (111)
343 PRK11138 outer membrane biogen 97.2 0.096 2.1E-06 54.1 22.3 95 400-499 295-393 (394)
344 PRK02888 nitrous-oxide reducta 97.1 0.025 5.4E-07 60.2 17.6 96 407-503 213-354 (635)
345 COG3490 Uncharacterized protei 97.1 0.028 6E-07 53.3 15.9 207 241-498 119-346 (366)
346 COG0823 TolB Periplasmic compo 97.1 0.026 5.7E-07 58.5 17.2 110 392-503 241-361 (425)
347 KOG2114 Vacuolar assembly/sort 97.1 0.02 4.2E-07 61.8 16.2 102 401-503 79-204 (933)
348 PF03178 CPSF_A: CPSF A subuni 97.0 0.16 3.4E-06 51.0 21.5 175 257-497 62-262 (321)
349 smart00320 WD40 WD40 repeats. 97.0 0.0026 5.7E-08 40.0 5.8 37 420-457 3-40 (40)
350 PF00930 DPPIV_N: Dipeptidyl p 96.9 0.35 7.6E-06 49.1 23.6 249 244-504 1-320 (353)
351 COG3391 Uncharacterized conser 96.9 0.52 1.1E-05 48.4 24.8 198 240-509 78-292 (381)
352 PF04053 Coatomer_WDAD: Coatom 96.9 0.1 2.2E-06 54.4 19.2 217 238-502 35-264 (443)
353 COG3386 Gluconolactonase [Carb 96.9 0.28 6E-06 48.6 21.4 119 391-511 113-253 (307)
354 cd00216 PQQ_DH Dehydrogenases 96.8 0.36 7.8E-06 51.4 23.4 105 401-510 303-434 (488)
355 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.052 1.1E-06 50.8 13.7 107 401-509 25-132 (354)
356 PF08553 VID27: VID27 cytoplas 96.7 0.043 9.3E-07 60.5 15.4 119 378-499 514-646 (794)
357 PF00930 DPPIV_N: Dipeptidyl p 96.6 0.67 1.5E-05 47.1 22.7 98 393-490 239-347 (353)
358 PF04841 Vps16_N: Vps16, N-ter 96.6 0.43 9.3E-06 49.5 21.3 106 389-509 217-323 (410)
359 PF03178 CPSF_A: CPSF A subuni 96.5 0.39 8.4E-06 48.1 20.0 109 387-500 87-202 (321)
360 PF02897 Peptidase_S9_N: Proly 96.5 1.4 2.9E-05 45.9 25.7 216 286-510 125-367 (414)
361 COG0823 TolB Periplasmic compo 96.4 0.078 1.7E-06 55.0 14.2 121 383-504 187-318 (425)
362 PF08553 VID27: VID27 cytoplas 96.3 0.073 1.6E-06 58.7 14.3 150 295-458 492-646 (794)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 2.2 4.8E-05 45.9 25.6 61 451-511 441-501 (527)
364 PF06977 SdiA-regulated: SdiA- 96.1 1.4 3.1E-05 42.1 22.0 188 279-530 16-231 (248)
365 KOG2079 Vacuolar assembly/sort 96.0 0.023 5.1E-07 62.7 8.3 97 401-500 101-203 (1206)
366 cd00216 PQQ_DH Dehydrogenases 96.0 1.1 2.5E-05 47.6 21.1 104 406-510 172-329 (488)
367 PF05096 Glu_cyclase_2: Glutam 95.9 0.63 1.4E-05 44.5 16.6 123 389-515 45-172 (264)
368 PF05694 SBP56: 56kDa selenium 95.9 0.58 1.3E-05 47.7 16.9 154 360-514 153-357 (461)
369 PF12894 Apc4_WD40: Anaphase-p 95.8 0.031 6.7E-07 38.3 5.5 34 284-318 11-44 (47)
370 PF12894 Apc4_WD40: Anaphase-p 95.8 0.04 8.7E-07 37.7 6.0 34 467-500 8-41 (47)
371 PF00780 CNH: CNH domain; Int 95.8 1.1 2.5E-05 43.4 18.8 112 391-506 38-171 (275)
372 KOG4499 Ca2+-binding protein R 95.7 1.1 2.3E-05 41.8 16.3 131 389-529 109-262 (310)
373 COG3391 Uncharacterized conser 95.7 1.6 3.4E-05 44.9 20.1 117 390-507 117-246 (381)
374 PF05096 Glu_cyclase_2: Glutam 95.7 2.1 4.7E-05 40.9 21.4 180 286-530 46-240 (264)
375 PF14781 BBS2_N: Ciliary BBSom 95.3 0.91 2E-05 38.5 13.6 105 401-507 12-132 (136)
376 PF14655 RAB3GAP2_N: Rab3 GTPa 95.3 4.3 9.2E-05 41.9 25.4 82 429-511 308-409 (415)
377 KOG2079 Vacuolar assembly/sort 95.2 0.48 1E-05 52.9 14.8 81 246-332 98-178 (1206)
378 PRK13616 lipoprotein LpqB; Pro 95.1 0.62 1.3E-05 50.6 15.4 103 391-498 399-523 (591)
379 KOG2395 Protein involved in va 94.9 0.6 1.3E-05 48.2 13.5 118 379-500 367-500 (644)
380 KOG2444 WD40 repeat protein [G 94.8 0.089 1.9E-06 48.5 6.7 100 401-500 72-177 (238)
381 KOG2395 Protein involved in va 94.8 0.71 1.5E-05 47.7 13.6 151 294-459 343-500 (644)
382 COG3204 Uncharacterized protei 94.6 2.9 6.3E-05 40.4 16.5 172 280-461 81-265 (316)
383 KOG3630 Nuclear pore complex, 94.4 0.17 3.6E-06 56.6 8.9 135 390-529 102-252 (1405)
384 PF02897 Peptidase_S9_N: Proly 94.4 7.3 0.00016 40.4 30.3 245 240-506 128-410 (414)
385 PF06433 Me-amine-dh_H: Methyl 94.1 2.3 5E-05 42.2 15.1 58 410-467 270-328 (342)
386 TIGR02604 Piru_Ver_Nterm putat 94.0 2.1 4.6E-05 43.7 15.8 98 390-489 73-202 (367)
387 PRK13616 lipoprotein LpqB; Pro 94.0 0.42 9.1E-06 51.9 10.9 111 387-503 348-482 (591)
388 PF15390 DUF4613: Domain of un 93.9 0.95 2.1E-05 47.6 12.5 114 386-500 54-186 (671)
389 KOG4441 Proteins containing BT 93.8 3.3 7.1E-05 45.0 17.4 109 399-509 427-555 (571)
390 PF12234 Rav1p_C: RAVE protein 93.6 2.3 5.1E-05 46.0 15.4 110 388-499 29-155 (631)
391 PHA02713 hypothetical protein; 93.6 2.3 4.9E-05 46.2 15.7 93 409-505 432-538 (557)
392 PF10168 Nup88: Nuclear pore c 93.4 2 4.3E-05 47.7 15.0 32 387-418 145-180 (717)
393 PF10168 Nup88: Nuclear pore c 93.4 4.5 9.8E-05 44.9 17.6 80 237-317 86-182 (717)
394 PF08728 CRT10: CRT10; InterP 93.2 5.1 0.00011 43.9 17.2 109 390-499 102-245 (717)
395 PF14583 Pectate_lyase22: Olig 93.1 11 0.00024 38.2 24.0 250 241-505 41-333 (386)
396 TIGR03074 PQQ_membr_DH membran 93.1 18 0.0004 40.6 22.9 102 408-510 335-487 (764)
397 KOG2444 WD40 repeat protein [G 93.0 0.38 8.3E-06 44.4 7.2 67 246-317 69-135 (238)
398 KOG3630 Nuclear pore complex, 92.9 1.4 2.9E-05 49.8 12.5 99 389-488 156-261 (1405)
399 PF15390 DUF4613: Domain of un 92.7 6.8 0.00015 41.5 16.5 96 393-490 117-221 (671)
400 PF07995 GSDH: Glucose / Sorbo 92.6 12 0.00027 37.5 25.7 72 424-495 248-330 (331)
401 TIGR03118 PEPCTERM_chp_1 conse 92.6 11 0.00024 36.8 21.7 67 443-509 214-288 (336)
402 COG3204 Uncharacterized protei 92.4 3.2 7E-05 40.0 12.8 116 385-501 82-211 (316)
403 PHA03098 kelch-like protein; P 92.0 10 0.00023 40.8 18.3 93 409-505 406-516 (534)
404 TIGR03074 PQQ_membr_DH membran 92.0 3.6 7.7E-05 46.1 14.7 112 399-510 194-354 (764)
405 KOG4499 Ca2+-binding protein R 91.9 6.7 0.00015 36.6 13.7 89 391-480 160-263 (310)
406 PF10313 DUF2415: Uncharacteri 91.9 0.52 1.1E-05 31.4 4.9 31 285-315 1-34 (43)
407 KOG1897 Damage-specific DNA bi 91.7 27 0.00059 39.4 27.1 123 389-511 488-626 (1096)
408 PF08728 CRT10: CRT10; InterP 91.5 5.9 0.00013 43.5 15.2 168 247-458 49-245 (717)
409 COG3386 Gluconolactonase [Carb 91.3 3.9 8.4E-05 40.6 12.8 108 236-344 163-272 (307)
410 PF07569 Hira: TUP1-like enhan 91.3 1.7 3.8E-05 40.7 9.9 74 428-505 12-100 (219)
411 PF10647 Gmad1: Lipoprotein Lp 91.1 5.5 0.00012 38.3 13.4 110 390-500 25-144 (253)
412 COG3490 Uncharacterized protei 90.1 4.4 9.6E-05 38.9 11.1 119 392-511 71-220 (366)
413 KOG1916 Nuclear protein, conta 89.8 0.69 1.5E-05 50.7 6.3 102 396-499 243-373 (1283)
414 PF10313 DUF2415: Uncharacteri 89.7 1.4 3.1E-05 29.3 5.4 32 471-502 1-35 (43)
415 KOG4441 Proteins containing BT 89.7 23 0.00051 38.5 18.0 107 399-507 380-506 (571)
416 KOG1983 Tomosyn and related SN 89.6 3.1 6.8E-05 48.0 11.8 74 385-463 195-268 (993)
417 TIGR02604 Piru_Ver_Nterm putat 89.3 13 0.00028 37.9 15.2 65 237-306 15-91 (367)
418 PF11635 Med16: Mediator compl 89.2 44 0.00095 37.8 22.4 68 427-495 258-345 (753)
419 PF10647 Gmad1: Lipoprotein Lp 89.0 22 0.00048 34.1 19.6 66 237-312 25-93 (253)
420 KOG1916 Nuclear protein, conta 88.7 0.073 1.6E-06 57.8 -1.8 64 243-314 191-265 (1283)
421 PF14761 HPS3_N: Hermansky-Pud 88.6 12 0.00027 34.6 12.7 111 392-504 21-167 (215)
422 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.6 6.5 0.00014 42.3 12.8 109 399-511 69-200 (527)
423 PF07569 Hira: TUP1-like enhan 88.4 2.7 5.9E-05 39.4 8.7 74 241-315 16-96 (219)
424 PF12234 Rav1p_C: RAVE protein 88.1 14 0.00031 40.1 14.8 70 387-459 71-156 (631)
425 PF12768 Rax2: Cortical protei 87.6 18 0.00039 35.4 14.0 115 409-531 16-147 (281)
426 PF14870 PSII_BNR: Photosynthe 87.3 28 0.00061 34.4 15.3 115 386-504 142-264 (302)
427 KOG1897 Damage-specific DNA bi 87.3 58 0.0013 36.9 22.1 248 241-507 263-524 (1096)
428 PRK13684 Ycf48-like protein; P 86.9 33 0.00072 34.5 16.1 106 389-498 215-329 (334)
429 PF14583 Pectate_lyase22: Olig 86.6 27 0.00059 35.5 14.9 106 395-500 87-222 (386)
430 PF14870 PSII_BNR: Photosynthe 85.7 39 0.00084 33.4 19.9 107 387-497 185-301 (302)
431 COG3823 Glutamine cyclotransfe 85.7 23 0.00051 32.6 12.4 90 358-447 144-247 (262)
432 KOG2377 Uncharacterized conser 85.7 14 0.0003 37.9 12.1 152 246-420 32-188 (657)
433 COG5167 VID27 Protein involved 85.0 7.5 0.00016 40.4 10.0 60 440-500 572-632 (776)
434 KOG4460 Nuclear pore complex, 84.6 15 0.00031 38.5 11.8 96 285-422 104-203 (741)
435 PF07995 GSDH: Glucose / Sorbo 83.5 19 0.00041 36.2 12.5 103 390-493 3-136 (331)
436 TIGR03032 conserved hypothetic 83.3 25 0.00055 34.6 12.4 106 413-530 189-314 (335)
437 PHA02790 Kelch-like protein; P 83.0 69 0.0015 34.0 17.8 97 401-504 365-474 (480)
438 PF12657 TFIIIC_delta: Transcr 82.0 11 0.00025 33.8 9.3 30 389-418 86-122 (173)
439 PF11715 Nup160: Nucleoporin N 81.7 5.3 0.00011 43.2 8.3 81 245-325 156-259 (547)
440 KOG2247 WD40 repeat-containing 80.5 0.25 5.5E-06 50.4 -2.2 95 388-485 74-174 (615)
441 KOG3616 Selective LIM binding 80.2 3.2 7E-05 44.7 5.6 81 427-511 13-93 (1636)
442 PF14727 PHTB1_N: PTHB1 N-term 80.0 79 0.0017 32.8 18.1 147 353-499 36-203 (418)
443 KOG1900 Nuclear pore complex, 78.5 17 0.00037 42.2 10.8 70 388-460 178-273 (1311)
444 PF11715 Nup160: Nucleoporin N 78.4 7.6 0.00016 42.0 8.2 71 440-510 157-258 (547)
445 KOG2280 Vacuolar assembly/sort 78.3 36 0.00079 37.3 12.6 40 471-510 217-256 (829)
446 PF12657 TFIIIC_delta: Transcr 77.1 14 0.0003 33.2 8.2 32 471-502 86-123 (173)
447 COG3823 Glutamine cyclotransfe 76.1 30 0.00065 31.9 9.7 114 401-516 58-174 (262)
448 KOG1983 Tomosyn and related SN 75.6 40 0.00088 39.2 13.2 33 285-317 36-68 (993)
449 PF14727 PHTB1_N: PTHB1 N-term 75.4 1.1E+02 0.0023 31.9 23.9 246 246-508 36-324 (418)
450 PF14655 RAB3GAP2_N: Rab3 GTPa 75.4 26 0.00057 36.2 10.5 83 382-464 301-403 (415)
451 PRK10115 protease 2; Provision 75.3 1.4E+02 0.0031 33.3 30.9 68 240-316 131-209 (686)
452 PF14761 HPS3_N: Hermansky-Pud 73.6 17 0.00037 33.6 7.7 56 442-497 29-92 (215)
453 PF05694 SBP56: 56kDa selenium 73.4 32 0.00069 35.5 10.2 129 286-419 182-344 (461)
454 PLN00033 photosystem II stabil 72.3 1.2E+02 0.0027 31.2 18.7 105 388-497 280-396 (398)
455 KOG2280 Vacuolar assembly/sort 72.2 1.6E+02 0.0035 32.5 17.3 51 388-438 216-269 (829)
456 COG1520 FOG: WD40-like repeat 71.9 65 0.0014 32.7 12.7 111 398-511 67-182 (370)
457 TIGR02276 beta_rpt_yvtn 40-res 71.6 16 0.00034 23.6 5.4 39 440-478 2-41 (42)
458 PHA02713 hypothetical protein; 70.8 40 0.00086 36.6 11.2 103 401-505 306-445 (557)
459 PF07676 PD40: WD40-like Beta 70.6 17 0.00038 23.1 5.4 31 467-497 5-38 (39)
460 smart00564 PQQ beta-propeller 70.5 9.8 0.00021 23.1 4.0 25 484-508 8-32 (33)
461 PRK13684 Ycf48-like protein; P 70.3 77 0.0017 31.8 12.5 112 388-503 172-290 (334)
462 TIGR02276 beta_rpt_yvtn 40-res 69.7 21 0.00045 22.9 5.7 36 401-436 6-41 (42)
463 PF10214 Rrn6: RNA polymerase 69.3 2.1E+02 0.0045 32.5 21.4 109 389-501 146-277 (765)
464 KOG2247 WD40 repeat-containing 69.0 0.61 1.3E-05 47.8 -2.8 114 387-504 33-151 (615)
465 KOG2377 Uncharacterized conser 68.5 1.5E+02 0.0033 30.7 14.6 115 387-504 65-189 (657)
466 KOG4460 Nuclear pore complex, 68.3 32 0.00069 36.1 9.0 75 430-505 105-203 (741)
467 PLN00033 photosystem II stabil 67.5 98 0.0021 32.0 12.6 104 391-498 241-354 (398)
468 PF05935 Arylsulfotrans: Aryls 67.0 1.3E+02 0.0027 32.0 13.8 112 394-509 153-310 (477)
469 TIGR03606 non_repeat_PQQ dehyd 66.8 1.7E+02 0.0038 30.7 15.5 107 384-491 25-166 (454)
470 PF08801 Nucleoporin_N: Nup133 66.6 1.7E+02 0.0036 30.4 16.7 32 471-502 190-221 (422)
471 PF13449 Phytase-like: Esteras 66.5 1.4E+02 0.0031 29.7 16.8 102 387-490 18-166 (326)
472 TIGR03118 PEPCTERM_chp_1 conse 65.9 1.4E+02 0.0031 29.4 12.5 113 389-502 23-172 (336)
473 PF10214 Rrn6: RNA polymerase 65.3 2.5E+02 0.0053 31.9 20.3 119 386-505 77-237 (765)
474 PF15477 SMAP: Small acidic pr 65.2 4.3 9.4E-05 30.3 1.7 13 61-73 10-22 (69)
475 PF13449 Phytase-like: Esteras 65.0 66 0.0014 32.2 10.8 100 429-530 20-156 (326)
476 PF10433 MMS1_N: Mono-function 64.5 2E+02 0.0044 30.6 21.3 85 441-531 418-504 (504)
477 PF01011 PQQ: PQQ enzyme repea 64.0 18 0.00039 23.1 4.3 28 484-511 2-29 (38)
478 COG5167 VID27 Protein involved 63.5 1.4E+02 0.0031 31.4 12.5 154 292-459 475-632 (776)
479 PF10395 Utp8: Utp8 family; I 62.6 2.5E+02 0.0053 31.0 16.3 171 284-509 129-314 (670)
480 PHA03098 kelch-like protein; P 59.0 81 0.0018 33.9 10.9 101 401-505 297-419 (534)
481 KOG2063 Vacuolar assembly/sort 57.2 2.1E+02 0.0045 32.7 13.5 74 242-318 21-100 (877)
482 PF11538 Snurportin1: Snurport 56.3 16 0.00036 23.9 3.0 23 48-71 4-26 (40)
483 TIGR03606 non_repeat_PQQ dehyd 55.3 2.7E+02 0.006 29.3 19.1 35 282-316 27-61 (454)
484 PF11635 Med16: Mediator compl 52.9 3.9E+02 0.0084 30.3 16.3 66 388-454 259-345 (753)
485 TIGR03548 mutarot_permut cycli 51.5 2.5E+02 0.0054 27.8 12.3 82 409-491 139-233 (323)
486 KOG3611 Semaphorins [Signal tr 50.9 1.3E+02 0.0028 33.7 10.7 76 378-455 398-489 (737)
487 COG1520 FOG: WD40-like repeat 50.7 2.8E+02 0.0061 28.0 19.6 111 401-511 155-279 (370)
488 PF01436 NHL: NHL repeat; Int 50.6 37 0.0008 20.0 3.8 25 473-497 4-28 (28)
489 PF03088 Str_synth: Strictosid 50.5 38 0.00082 26.7 4.8 43 447-489 33-75 (89)
490 KOG1900 Nuclear pore complex, 50.0 2.1E+02 0.0046 33.8 12.2 33 386-418 240-273 (1311)
491 PF07676 PD40: WD40-like Beta 47.2 71 0.0015 20.1 5.5 29 386-414 6-38 (39)
492 PF02333 Phytase: Phytase; In 46.4 3.4E+02 0.0074 27.8 22.5 110 401-511 173-302 (381)
493 PF01731 Arylesterase: Arylest 46.2 91 0.002 24.4 6.3 31 471-501 54-85 (86)
494 PF01011 PQQ: PQQ enzyme repea 45.4 60 0.0013 20.6 4.5 27 401-427 2-28 (38)
495 PF08801 Nucleoporin_N: Nup133 45.2 2.2E+02 0.0048 29.5 11.2 30 389-418 190-220 (422)
496 PF12341 DUF3639: Protein of u 44.9 57 0.0012 19.4 3.7 25 430-457 3-27 (27)
497 PLN02153 epithiospecifier prot 44.9 3.1E+02 0.0066 27.4 11.9 112 392-503 131-287 (341)
498 PHA02790 Kelch-like protein; P 44.8 2E+02 0.0044 30.5 11.0 103 399-506 318-429 (480)
499 PF14781 BBS2_N: Ciliary BBSom 44.7 2E+02 0.0044 24.6 13.3 76 242-318 5-85 (136)
500 KOG2006 WD40 repeat protein [G 44.3 57 0.0012 37.1 6.6 73 242-316 155-227 (1023)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-58 Score=476.41 Aligned_cols=477 Identities=43% Similarity=0.721 Sum_probs=348.0
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCCCCCCCccccccccccCCCccccccCCCCChHHHHHHHHHHhccccccc-
Q 009614 1 MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQS- 79 (531)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~- 79 (531)
|+.+.+||| |+|||+.|+++. .|+||+..|+||.|||+|||++|| |+..
T Consensus 1 ~~~~~~ee~-~~f~~~~~~~~~---------------------------~~~~w~~~p~sv~err~~~l~~mg--ls~~~ 50 (712)
T KOG0283|consen 1 MGAPGEEEE-DRFFDASERVSP---------------------------DYDLWTSSPGSVSERRRKFLNGMG--LSSKK 50 (712)
T ss_pred CCCcccccc-ccccccccccCc---------------------------chhhhhcCccchhHHHHHHhhhhc--ccccc
Confidence 566666444 999999999961 099999999999999999999999 6643
Q ss_pred cccccCC-CcccccccccccccccccCCceeccCCCCCCcccccCCCCcccCCCccccccccccCCcceeeeecCCCcee
Q 009614 80 LMNAEDL-EDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADL 158 (531)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 158 (531)
......+ ..........++.-... ..|......+.+-.+ .+|.... .....+.. ++.|.++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~-~~s~~~~-------------~~~~~~~~--~~~~~e~ 112 (712)
T KOG0283|consen 51 TLSRSETVDRLSSSSVESNVDESNH--NSVEDTDSEQCRPSS-SSSKSRV-------------SQSSSSIE--LDTGDEF 112 (712)
T ss_pred ccccccccccccccccccccccccc--ccccccccccCCccc-ccccccc-------------ccccccee--eccccee
Confidence 2221111 11111110111100000 000000000000000 1111100 01111111 6899999
Q ss_pred EEccCCCchhhhhhcccccCCCCcccccccccCCCCCccccccCCccccccc-----------hhh--HHhhhhhccccc
Q 009614 159 VVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEES-----------RDL--VDAKRKVKRGWL 225 (531)
Q Consensus 159 ~~~~~~~~~~~~~~~lr~v~~~~~~~~~~f~~~~~~s~~~v~~l~~~~~~~~-----------~~~--~~~~k~~~~~w~ 225 (531)
++++...++.++. +.+++.+...++++|+.+.+.++. +.++++++..+. ... ....++....|+
T Consensus 113 ~v~e~~~~~~~~~--~sd~~~~~~~~~e~~e~~~g~~~~-v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l 189 (712)
T KOG0283|consen 113 SVSENPEDGSVNR--LSDVGTGASSTLEELESSPGESSR-VKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWL 189 (712)
T ss_pred eEeeccCcccccc--ccCCCcccccccccccCCcCcccc-hhhhhhhcccccchhhcccccccccccccchhhhhhhhhh
Confidence 9999999999987 999999999999999999988888 888888665430 111 111333445588
Q ss_pred cccccceeeeccccc---eeeeCCCCe-----E--EeeecC--------CeEEEEeCCCCcccccccccceEEc-ccCCC
Q 009614 226 KKLGAMARIIDRHGS---ATLKPGDHE-----L--TLGQRM--------RRVRVHPVKKQSRELSSLYTGQEFL-AHEGS 286 (531)
Q Consensus 226 ~~~~~~~~~~~~~~s---~~fspdg~~-----l--asgs~d--------g~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~ 286 (531)
+.++.+++....... ..+..+..- + .++..+ ..+++-...+...++..++..|++. +|.++
T Consensus 190 ~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~ga 269 (712)
T KOG0283|consen 190 KSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGA 269 (712)
T ss_pred hhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCc
Confidence 888877766554311 111122111 1 111111 5788888888899999999999999 99999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccc-cccccccccCCCce
Q 009614 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK-IDKTKSLRKSSDLT 365 (531)
Q Consensus 287 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 365 (531)
|++|+||+||+|||+||.||.|+||.+...+. +........++.+..+....+-+....... ..............
T Consensus 270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred EEEEEeCCCCceeeecCCCceEEEEEEeccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 99999999999999999999999999977554 223333444444444433333333222211 11222233344444
Q ss_pred EEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (531)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~ 445 (531)
..+.+...+.+..+|++.+.||.+.|++|.|+.+++|+++++|++||||++....|+++|.|++.||||+|+|.|.+||+
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFi 426 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFI 426 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEe
Confidence 48889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeee
Q 009614 446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (531)
Q Consensus 446 sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~ 525 (531)
+|+.||+||||++...+++.|.+....|+++||+|||++.++|+.+|.|++|++...++++..++.++.+||.++++|||
T Consensus 427 SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG 506 (712)
T KOG0283|consen 427 SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITG 506 (712)
T ss_pred ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeC
Q 009614 526 FQVVKI 531 (531)
Q Consensus 526 l~f~p~ 531 (531)
|||.|.
T Consensus 507 ~Q~~p~ 512 (712)
T KOG0283|consen 507 LQFFPG 512 (712)
T ss_pred eEecCC
Confidence 999974
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-36 Score=282.59 Aligned_cols=274 Identities=21% Similarity=0.369 Sum_probs=229.7
Q ss_pred cccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC
Q 009614 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (531)
Q Consensus 226 ~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D 305 (531)
+....+.+|.+.|-|+.|+|+|..||+|+.|.++++||+.+.. +..+.++|...|.||+|+|||+.||+|+.|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCcchhhccccC
Confidence 3445788999999999999999999999999999999998543 334689999999999999999999999999
Q ss_pred CcEEEEEcccCccc-cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614 306 GTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (531)
Q Consensus 306 g~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
|+|++||..+++++ ..+..+...+.++.|.+.+... ......+.+.|+.+.+|+... .+.+..+
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-----------~~r~las~skDg~vrIWd~~~----~~~~~~l 243 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-----------PCRRLASSSKDGSVRIWDTKL----GTCVRTL 243 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCC-----------CccceecccCCCCEEEEEccC----ceEEEEe
Confidence 99999999998765 4577888888888887766332 122456778899999999876 3457888
Q ss_pred ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEE-----------------------------------------
Q 009614 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR----------------------------------------- 423 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~----------------------------------------- 423 (531)
.+|+.+|+|+.|-.+|+|++|+.|++|++|+...|.+++
T Consensus 244 sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 244 SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 999999999999988899999999999999874331110
Q ss_pred ---------------------------------------EeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614 424 ---------------------------------------VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 424 ---------------------------------------~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~ 464 (531)
...|..-|+.+.|+| |+.|+|+++.|..|++||.++++.+
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~l 402 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFL 402 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchh
Confidence 012677799999999 9999999999999999999999988
Q ss_pred -EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 465 -~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
.+.+|-..|+.++|+.|.++|++|+.|.++++|++++.++.+..+ | +...+.++.++|
T Consensus 403 asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp----G----h~DEVf~vDwsp 461 (480)
T KOG0271|consen 403 ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP----G----HADEVFAVDWSP 461 (480)
T ss_pred hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC----C----CCceEEEEEecC
Confidence 588899999999999999999999999999999999998877544 2 234566666655
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-34 Score=270.57 Aligned_cols=262 Identities=23% Similarity=0.364 Sum_probs=222.8
Q ss_pred ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-----CCCEEEE
Q 009614 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-----DGQYLAS 301 (531)
Q Consensus 227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-----dg~~Las 301 (531)
++.++.+|..-|.|++|+|||+.||+|+.||.|++||.+++... +..+.+|+..|++++|.| ..++||+
T Consensus 149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~------g~~l~gH~K~It~Lawep~hl~p~~r~las 222 (480)
T KOG0271|consen 149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI------GRALRGHKKWITALAWEPLHLVPPCRRLAS 222 (480)
T ss_pred cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc------cccccCcccceeEEeecccccCCCccceec
Confidence 34467778888999999999999999999999999998876653 345889999999999976 6679999
Q ss_pred EeCCCcEEEEEcccCccccceecCCCCCeeEEEeec-------CCcceeeeecccccc----------------------
Q 009614 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN-------HLSQLIPIDVDKEKI---------------------- 352 (531)
Q Consensus 302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---------------------- 352 (531)
++.||.|+|||+..+.++..+..+...+.|+.|-.. ....+..+....+..
T Consensus 223 ~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 223 SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVL 302 (480)
T ss_pred ccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhh
Confidence 999999999999999999999999999999876421 111111111111000
Q ss_pred --------------------------------ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC
Q 009614 353 --------------------------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (531)
Q Consensus 353 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~ 400 (531)
..-..++++.+..+++|.+... .+|+....+|..-|+.+.|+|++
T Consensus 303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~---kkpi~rmtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS---KKPITRMTGHQALVNHVSFSPDG 379 (480)
T ss_pred hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc---ccchhhhhchhhheeeEEECCCc
Confidence 0012467888999999988653 35778889999999999999999
Q ss_pred -eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEE
Q 009614 401 -FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVC 477 (531)
Q Consensus 401 -~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~ 477 (531)
++++++.|+.|++||.++|+.+.+|+ |-..|+.|+|+. |.++|++|+.|.++++|++++.++. .+.+|.+.|.++.
T Consensus 380 r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD 458 (480)
T KOG0271|consen 380 RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD 458 (480)
T ss_pred cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE
Confidence 99999999999999999999999998 999999999999 9999999999999999999999887 5899999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEe
Q 009614 478 YCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 478 ~spdg~~l~sgs~dg~I~iwd 498 (531)
|+|||..+++|+.|..+++|.
T Consensus 459 wspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 459 WSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceeecCCCceEEEeec
Confidence 999999999999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=274.76 Aligned_cols=258 Identities=20% Similarity=0.312 Sum_probs=225.2
Q ss_pred cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcc
Q 009614 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKVI 314 (531)
Q Consensus 237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~iWd~~ 314 (531)
++..+.|++|+..||+|+.+|.++||+... ....++|.||++.|.++.|+|. +..||||+.||+|++|++.
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~-------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQ-------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCC-------cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 445578999999999999999999999884 3455789999999999999996 6689999999999999999
Q ss_pred cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (531)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 394 (531)
+...+..+..+...+..+.|.++... +.+++.|..-.+|+.... ..+....||...|.++
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~----------------L~TasfD~tWRlWD~~tk----~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKF----------------LGTASFDSTWRLWDLETK----SELLLQEGHSKGVFSI 309 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCce----------------eeecccccchhhcccccc----hhhHhhccccccccee
Confidence 99999999999888888888776642 345666777788887663 3456678999999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCC
Q 009614 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIRE 471 (531)
Q Consensus 395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~ 471 (531)
+|+|+| ++++|+.|..-+|||++++.++..+. |..+|.+|.|+| +|..||+|+.|++++|||++..+.+ .+.+|.+
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n 388 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN 388 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccc
Confidence 999999 99999999999999999999999986 999999999999 9999999999999999999988766 5889999
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 472 IVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 472 ~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
.|+.|+|+| .|.+|++++.|++++||...+..+++... | |..+|.++..+|
T Consensus 389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa----G----He~kV~s~Dis~ 440 (459)
T KOG0272|consen 389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA----G----HEGKVISLDISP 440 (459)
T ss_pred hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc----C----CccceEEEEecc
Confidence 999999999 78999999999999999999999887543 2 346777776654
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-34 Score=272.79 Aligned_cols=245 Identities=20% Similarity=0.334 Sum_probs=220.5
Q ss_pred ccccceeeeccccceeeeCC--CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614 227 KLGAMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (531)
Q Consensus 227 ~~~~~~~~~~~~~s~~fspd--g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (531)
.+.++.+|...++++.|+|. +..+|+|+.||++++|++... ...+.+.+|...|..++|+|+|++|+|++.
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-------~~l~~l~gH~~RVs~VafHPsG~~L~Tasf 281 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-------TPLQDLEGHLARVSRVAFHPSGKFLGTASF 281 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-------cchhhhhcchhhheeeeecCCCceeeeccc
Confidence 34467889999999999998 568999999999999999843 344578999999999999999999999999
Q ss_pred CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (531)
Q Consensus 305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
|.+-++||+.++..+.....+...+.++.|.++.. ...+++-|..-.+|+.+.. ..+..+
T Consensus 282 D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS----------------L~~tGGlD~~~RvWDlRtg----r~im~L 341 (459)
T KOG0272|consen 282 DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS----------------LAATGGLDSLGRVWDLRTG----RCIMFL 341 (459)
T ss_pred ccchhhcccccchhhHhhcccccccceeEecCCCc----------------eeeccCccchhheeecccC----cEEEEe
Confidence 99999999999998888888888888888876652 2356677888889998874 567889
Q ss_pred ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~ 462 (531)
.+|...|.+++|+|+| .|+||+.|++++|||++...++.++. |.+-|+.|+|.|..+.+|++++.|++++||...+.+
T Consensus 342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS 421 (459)
T ss_pred cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc
Confidence 9999999999999999 99999999999999999999988885 999999999999888999999999999999999999
Q ss_pred EEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614 463 VVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 463 ~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 498 (531)
+++ +.+|.+.|.++.++||++++++++.|.+|++|.
T Consensus 422 ~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 422 PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 985 899999999999999999999999999999995
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-33 Score=287.76 Aligned_cols=246 Identities=27% Similarity=0.419 Sum_probs=217.4
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCc-------cccc-----------------ccccceEEcccCCCEEEEE
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-------RELS-----------------SLYTGQEFLAHEGSILTMK 291 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~-------~~~~-----------------~~~~~~~l~~H~~~I~~l~ 291 (531)
..+.|..|++|+.++|.|..|..|++|.+...+ ..+. ......++.||.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 455678999999999999999999999998422 0111 1112245889999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCC
Q 009614 292 FSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP 371 (531)
Q Consensus 292 fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (531)
|+|+.++|+++++|++||+|.+.+..++..+..+..++..+.|.|.. .+..+++.|.+..+|..
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G----------------yYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG----------------YYFATASHDQTARLWST 522 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc----------------eEEEecCCCceeeeeec
Confidence 99999999999999999999999999999999998888888887543 23456678888888887
Q ss_pred ccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeC
Q 009614 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI 449 (531)
Q Consensus 372 ~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~ 449 (531)
.. .+|++.+.+|.+.|.|+.|+|+. ++++||.|.+||+||+.+|..++.|. |.++|++|+|+| +|.+|++|+.
T Consensus 523 d~----~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~e 597 (707)
T KOG0263|consen 523 DH----NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGDE 597 (707)
T ss_pred cc----CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeeccc
Confidence 66 56889999999999999999999 99999999999999999999999996 999999999999 9999999999
Q ss_pred CCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 450 DGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 450 Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
||.|.|||+.+++++ .+.+|.+.|+++.|+.||..||+|+.|.+|++||+..-
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999998877 58999999999999999999999999999999998643
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.3e-32 Score=262.39 Aligned_cols=245 Identities=23% Similarity=0.412 Sum_probs=208.9
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 315 (531)
..+.+++|+.+|.+||+|+.+|.++||+..... ..++..|+++|.+|+|+.+|+||++++.||++.+||..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 456679999999999999999999999986432 235778999999999999999999999999999999999
Q ss_pred CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 395 (531)
+...+.+..+..+..-+.|..+. ...+.+.++.+.++.... ..|+.++.+|.+.|.+|.
T Consensus 308 g~~~q~f~~~s~~~lDVdW~~~~-----------------~F~ts~td~~i~V~kv~~----~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 308 GTVKQQFEFHSAPALDVDWQSND-----------------EFATSSTDGCIHVCKVGE----DRPVKTFIGHHGEVNALK 366 (524)
T ss_pred ceEEEeeeeccCCccceEEecCc-----------------eEeecCCCceEEEEEecC----CCcceeeecccCceEEEE
Confidence 99888887776654434443222 123445565666654443 468999999999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeC--------CCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV--------DDNYFISGSIDGKVRIWEVRRCQVVD 465 (531)
Q Consensus 396 ~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~--------d~~~l~sgs~Dg~I~Iwd~~~~~~~~ 465 (531)
|+|.+ +|++++.|++++||......+...+. |...|..+.|+|+ .+..+++++.|++|++||+..+.++.
T Consensus 367 ~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~ 446 (524)
T KOG0273|consen 367 WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH 446 (524)
T ss_pred ECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE
Confidence 99999 99999999999999998888887775 9999999999984 34579999999999999999998885
Q ss_pred -ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 466 -YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 466 -~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
+..|..+|++++|+|+|+++++|+.||.|+||+++++++++.++
T Consensus 447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 447 TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 77999999999999999999999999999999999999998765
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-31 Score=241.73 Aligned_cols=266 Identities=19% Similarity=0.327 Sum_probs=226.0
Q ss_pred cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (531)
-+++.+|..++.++.|++|.+++++++.||.+.|||.-+..++ +.+.-....|..++|+|.|+++|.|+-|+.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-------haipl~s~WVMtCA~sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-------HAIPLPSSWVMTCAYSPSGNFVACGGLDNK 120 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-------eEEecCceeEEEEEECCCCCeEEecCcCce
Confidence 3578899999999999999999999999999999998865543 235556788999999999999999999999
Q ss_pred EEEEEcccC------ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcce
Q 009614 308 VRVWKVIEH------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (531)
Q Consensus 308 I~iWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (531)
..||++.+. ...+.+..+.....|..|..+ ..++++++|.++.+|+... .+.+
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-----------------~~ilT~SGD~TCalWDie~----g~~~ 179 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-----------------NHILTGSGDMTCALWDIET----GQQT 179 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCC-----------------CceEecCCCceEEEEEccc----ceEE
Confidence 999999855 223445566666666655442 2347889999999999987 4557
Q ss_pred eEeecCCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614 382 HEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (531)
Q Consensus 382 ~~~~~h~~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~ 458 (531)
..|.+|.+.|.+|+++| ++ .+++|+-|++.+|||++.+.++++|. |...|++|+|.| ++.-|++|+.|++.|+||+
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEee
Confidence 88999999999999999 56 99999999999999999999999996 999999999999 9999999999999999999
Q ss_pred CCCeEEEecCC---CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 459 RRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 459 ~~~~~~~~~~~---~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
+..+.+....+ ..+|++++|+..|++|.+|..|.++.+||.-.++...... .|.++|+.|..+|
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSP 325 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee--------ccCCeeEEEEECC
Confidence 99876654333 4579999999999999999999999999987777665332 3568999998876
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-31 Score=241.33 Aligned_cols=277 Identities=19% Similarity=0.280 Sum_probs=233.6
Q ss_pred cccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614 228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (531)
.+++.+|.+-|.+++..+.+ ..+++++.|..+.+|++...... .....+.+.||...|..+..++||++.++++.|+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~--~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK--YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc--cCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 34677788888888888874 56778999999999999866433 3344567999999999999999999999999999
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
++++||+.+++..+.+..|...+.++.+.++.. ..++++.|.++.+|+... ....+...
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~----------------qivSGSrDkTiklwnt~g-----~ck~t~~~ 144 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR----------------QIVSGSRDKTIKLWNTLG-----VCKYTIHE 144 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCc----------------eeecCCCcceeeeeeecc-----cEEEEEec
Confidence 999999999999999999999998888877653 346788888898887654 22333333
Q ss_pred --CCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 387 --HSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 387 --h~~~I~~l~~sp~--~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
|.+.|.|+.|+|+ . +|++++.|++|++||+++-+....+. |.++++.++++| ||.+.++|+.||.+.+||++.
T Consensus 145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE 223 (315)
T ss_pred CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC
Confidence 3789999999998 4 99999999999999999988888774 999999999999 999999999999999999999
Q ss_pred CeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc-ccCCCceeeeEEEe
Q 009614 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK-KKLPGKRITGFQVV 529 (531)
Q Consensus 461 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~-kk~~~~~It~l~f~ 529 (531)
++.+...++...|.+++|+|+.-.|+.+. +..|+|||+.++.++.+++....+. .+.....-++++|+
T Consensus 224 ~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws 292 (315)
T KOG0279|consen 224 GKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS 292 (315)
T ss_pred CceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence 99999999999999999999976666655 4559999999999999988877665 44445566777776
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=1.6e-30 Score=236.69 Aligned_cols=247 Identities=19% Similarity=0.312 Sum_probs=207.0
Q ss_pred ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (531)
Q Consensus 227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (531)
..+.+.+|...+..+..++||++.++++.|+.+++||+..+ ...+.|.||...|.+++|++|.+.++||+.|.
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG-------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC-------cEEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence 34457788888999999999999999999999999999854 34456899999999999999999999999999
Q ss_pred cEEEEEcccCccccceecC-CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 307 TVRVWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
+|++|++............ ..-+.|+.|.|+....+ ++.++.|..+.+|+....++ ...+.
T Consensus 128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~--------------Ivs~s~DktvKvWnl~~~~l----~~~~~ 189 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI--------------IVSASWDKTVKVWNLRNCQL----RTTFI 189 (315)
T ss_pred eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE--------------EEEccCCceEEEEccCCcch----hhccc
Confidence 9999998665443333332 56688999988874433 36778899999999988665 56788
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~ 464 (531)
+|++.++.++++|+| ++++|+.||.+.+||++.++.+..+.|...|.+++|+| +...|+ ...+..|+|||+.++.++
T Consensus 190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-nrywL~-~at~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-NRYWLC-AATATSIKIWDLESKAVV 267 (315)
T ss_pred cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC-CceeEe-eccCCceEEEeccchhhh
Confidence 999999999999999 99999999999999999999999999999999999999 554444 455667999999998876
Q ss_pred E-----ecCC-----CCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 465 D-----YTDI-----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 465 ~-----~~~~-----~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
. ..+. .....+++|++||..|++|-.|+.|++|.+.
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2 2222 2345788999999999999999999999874
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.2e-30 Score=260.10 Aligned_cols=254 Identities=23% Similarity=0.396 Sum_probs=211.8
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 310 (531)
..+|...+.+++++|||+++|+|+.||.|+|||.. ..++..++..|+..|+.+.|+..|+.|++++-||+|+.
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-------SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-------SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEecc-------CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 56678899999999999999999999999999987 45566789999999999999999999999999999999
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
||+...+..+++..+.. ....+...+..+.+++.. .-..-.+.+|+.++. +.+-.+.||.++
T Consensus 419 wDlkRYrNfRTft~P~p-~QfscvavD~sGelV~AG-------------~~d~F~IfvWS~qTG----qllDiLsGHEgP 480 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAG-------------AQDSFEIFVWSVQTG----QLLDILSGHEGP 480 (893)
T ss_pred eeecccceeeeecCCCc-eeeeEEEEcCCCCEEEee-------------ccceEEEEEEEeecC----eeeehhcCCCCc
Confidence 99999988888766543 333344444444444322 122335788888774 457788999999
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCC-CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE---
Q 009614 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--- 465 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~-~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--- 465 (531)
|.+++|+|.+ .|++++.|++||+||+-. ...+.++.+...++.++|.| +++-++++..||.|.+||+..+..+.
T Consensus 481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeecccc
Confidence 9999999999 999999999999999854 45677888899999999999 99999999999999999987654331
Q ss_pred ------------------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 466 ------------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 466 ------------------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
-......++.++|++||..|++|+..+.|+||++.++-+++++++
T Consensus 560 grkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 560 GRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred chhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence 111235689999999999999999999999999999999998886
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=229.75 Aligned_cols=231 Identities=22% Similarity=0.386 Sum_probs=200.7
Q ss_pred eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (531)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (531)
++++||.+.|+++.|++|.++|++++.||.+.|||.-+......++.+..-+...+++|.... .
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~----------------V 112 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNF----------------V 112 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCe----------------E
Confidence 579999999999999999999999999999999999998888888777766666666655421 2
Q ss_pred cccCCCceEEEeCCccccc--cCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEE
Q 009614 358 LRKSSDLTCVVLPPKVFRL--LEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSV 434 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv 434 (531)
..++-+..+.+|+....+. ..+....+.+|.+.+.|..|-++++|++++.|.+..+||+++++.+..|. |.+.|.++
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 3566677788888775422 23446678999999999999998899999999999999999999999996 99999999
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeec
Q 009614 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ 513 (531)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~ 513 (531)
.++|.+++.|++|+-|+..+|||++.+.+++ +.+|...|++|+|.|+|.-+++|+.|+++++||++..+.+..++
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys---- 268 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS---- 268 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec----
Confidence 9999899999999999999999999998874 89999999999999999999999999999999999998888777
Q ss_pred ccccCCCceeeeEEEee
Q 009614 514 GKKKLPGKRITGFQVVK 530 (531)
Q Consensus 514 ~~kk~~~~~It~l~f~p 530 (531)
+......|++++|+.
T Consensus 269 --~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 269 --HDSIICGITSVAFSK 283 (343)
T ss_pred --cCcccCCceeEEEcc
Confidence 223346899999974
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=4.7e-29 Score=223.55 Aligned_cols=254 Identities=17% Similarity=0.305 Sum_probs=207.8
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 310 (531)
+......|+.+.+.|+++.||+++. ..|++||++..... +..++.+|+..|++|.|..+|+.++|||+||+++|
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-----Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kI 109 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-----PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKI 109 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-----ceeEEeccCCceEEEEEeecCeEEEecCCCceEEE
Confidence 4444456778999999999999865 78999999965532 34578999999999999999999999999999999
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
||++...+.+.+... .++.++...++.. .++.+..++.+.+|+.........++.. ....
T Consensus 110 WdlR~~~~qR~~~~~-spVn~vvlhpnQt----------------eLis~dqsg~irvWDl~~~~c~~~liPe---~~~~ 169 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHN-SPVNTVVLHPNQT----------------ELISGDQSGNIRVWDLGENSCTHELIPE---DDTS 169 (311)
T ss_pred EeccCcccchhccCC-CCcceEEecCCcc----------------eEEeecCCCcEEEEEccCCccccccCCC---CCcc
Confidence 999997766666554 5566666655543 3356788889999998765433333222 3367
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE------EEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-
Q 009614 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC------LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC- 461 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~------l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~- 461 (531)
|.++.+.|+| +|+.+...|...+|++-+.+. +..|. |+..+..+.++| +.++|++++.|.+++||+..+.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCce
Confidence 9999999999 999999999999999976543 33333 999999999999 9999999999999999999987
Q ss_pred eE-EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 462 QV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 462 ~~-~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
+. ..+.+|...+...+|+.||.||++|+.|+.+++|++..++.+.+++.+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 22 257889999999999999999999999999999999999998877644
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.2e-29 Score=235.94 Aligned_cols=280 Identities=20% Similarity=0.339 Sum_probs=237.2
Q ss_pred hcccccccc---ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC
Q 009614 220 VKRGWLKKL---GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG 296 (531)
Q Consensus 220 ~~~~w~~~~---~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg 296 (531)
.++.|..+. +.+.+|.+-|.|+++.|.+.++++|+.|++|+|||+..+...+ ++.||...|..+++|+-.
T Consensus 133 ~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-------tltGhi~~vr~vavS~rH 205 (460)
T KOG0285|consen 133 PRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-------TLTGHIETVRGVAVSKRH 205 (460)
T ss_pred CCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-------eecchhheeeeeeecccC
Confidence 566776554 4578888999999999999999999999999999999665443 588999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (531)
Q Consensus 297 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (531)
.||++++.|+.|+.||+...+.++.+..+-..+.|+...+.- ..+++++.|..+.+|+.+.
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl----------------dvl~t~grDst~RvWDiRt--- 266 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL----------------DVLVTGGRDSTIRVWDIRT--- 266 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc----------------eeEEecCCcceEEEeeecc---
Confidence 999999999999999999999999998888877777665432 2346788899999999987
Q ss_pred cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (531)
Q Consensus 377 ~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~ 454 (531)
...++.+.||..+|..+.+.|.. .+++|+.|++|++||++.++...++. |+..|.+++.+| ....||+++.| .|+
T Consensus 267 -r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik 343 (460)
T KOG0285|consen 267 -RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIK 343 (460)
T ss_pred -cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cce
Confidence 34689999999999999999877 99999999999999999998887775 889999999999 89999999987 699
Q ss_pred EEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV 529 (531)
Q Consensus 455 Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~ 529 (531)
-|++..+..+ .+.+|+..|++++...|| ++++|+.+|.+.+||.++|...|..+...+.-.-....-|+.-+|-
T Consensus 344 ~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 344 QWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred eccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 9999999877 588999999999999887 6889999999999999999988877644433232333445555543
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-29 Score=235.56 Aligned_cols=252 Identities=21% Similarity=0.333 Sum_probs=222.1
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 310 (531)
++++...+..+-|+|+-..+++++.|++|++||+.++..+ ..++||+.+|.+|+|+..|++||+++.|-.+++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e-------~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE-------RSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh-------hhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 5567777778899999999999999999999999976653 358999999999999999999999999999999
Q ss_pred EEccc-CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 311 WKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 311 Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
||..+ .++++.+..+...+.++.+.+.. ...++.+.|..+..|+... +-.+.++.+|..
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~g----------------d~ilS~srD~tik~We~~t----g~cv~t~~~h~e 236 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLG----------------DHILSCSRDNTIKAWECDT----GYCVKTFPGHSE 236 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecC----------------CeeeecccccceeEEeccc----ceeEEeccCchH
Confidence 99987 56777778888888888887764 2335667778888888776 345889999999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeC--------------CCCEEEEEeCCCeE
Q 009614 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV--------------DDNYFISGSIDGKV 453 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~--------------d~~~l~sgs~Dg~I 453 (531)
.|..+..+.+| ++++++.|.+|++|-+.+++|...+. |..+|-|++|-|. .+.++.+++.|++|
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 99999999999 99999999999999999999998886 9999999999773 23599999999999
Q ss_pred EEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 454 ~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
++||+.++.++ .+.+|.+.|..++|+|.|+||+++..|+++++||++++++...+.
T Consensus 317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 99999999987 799999999999999999999999999999999999998876554
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=4e-30 Score=244.75 Aligned_cols=260 Identities=20% Similarity=0.325 Sum_probs=215.1
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 315 (531)
..|..+.|.|+|+.|++|+..|.+.+|+.....- ...+++|..+|++|.|+++|.+++||+.+|.|++|+..-
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeH-------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence 3455689999999999999999999999853222 224789999999999999999999999999999999754
Q ss_pred Cccccceec-CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614 316 HERLDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (531)
Q Consensus 316 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 394 (531)
.. ++.+.. +...+.++.|+++.. +.++.+.|+.+.+|+.... ++-..+.+|.-.|.++
T Consensus 170 nn-Vk~~~ahh~eaIRdlafSpnDs----------------kF~t~SdDg~ikiWdf~~~----kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 170 NN-VKIIQAHHAEAIRDLAFSPNDS----------------KFLTCSDDGTIKIWDFRMP----KEERVLRGHGWDVKSV 228 (464)
T ss_pred hh-hHHhhHhhhhhhheeccCCCCc----------------eeEEecCCCeEEEEeccCC----chhheeccCCCCccee
Confidence 43 333433 336778888877442 3356788899999987653 4456679999999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe-EEEecCCCC
Q 009614 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYTDIRE 471 (531)
Q Consensus 395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-~~~~~~~~~ 471 (531)
.|+|.. ++++++.|..|++||.+++.|+.++. |+..|..+.|+| ++++|+++|.|..++++|+++.+ +..+.+|..
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk 307 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK 307 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchh
Confidence 999987 99999999999999999999999886 999999999999 88999999999999999999654 446889999
Q ss_pred ceEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEeeC
Q 009614 472 IVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI 531 (531)
Q Consensus 472 ~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p~ 531 (531)
.|+++.|+|- ..+|++|+.||.|..|.+...+.+..+ ...|-..|.++++.|+
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i-------~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI-------PPAHDGEIWSLAYHPL 361 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccccccCC-------Ccccccceeeeecccc
Confidence 9999999994 567889999999999999844443322 2345678999999885
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=3.7e-29 Score=238.17 Aligned_cols=241 Identities=19% Similarity=0.288 Sum_probs=211.4
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
+..|...|.++.|+++|.++++|+.+|.|++|+..-. ..+.+++|. .+|++++|+|+...+++|++||+|+
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchh--------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence 3457788889999999999999999999999987632 223455555 8999999999999999999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
|||....+.-..+..+.-.+.++.|.+... ..++++.|..+.+|+++. +..+.++.+|..
T Consensus 206 iWdf~~~kee~vL~GHgwdVksvdWHP~kg----------------LiasgskDnlVKlWDprS----g~cl~tlh~HKn 265 (464)
T KOG0284|consen 206 IWDFRMPKEERVLRGHGWDVKSVDWHPTKG----------------LIASGSKDNLVKLWDPRS----GSCLATLHGHKN 265 (464)
T ss_pred EEeccCCchhheeccCCCCcceeccCCccc----------------eeEEccCCceeEeecCCC----cchhhhhhhccc
Confidence 999998888888888888888888876542 235667778999999988 456889999999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--
Q 009614 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-- 465 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-- 465 (531)
.|+.+.|+|++ +|++++.|..++++|+++.+.+.++. |...|+++.|+|....+|.+|+.||.|..|.+...+.+.
T Consensus 266 tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 266 TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence 99999999999 99999999999999999888888887 999999999999999999999999999999999655553
Q ss_pred ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 499 (531)
-.+|...|++++|+|-|.+|++|+.|.++++|.-
T Consensus 346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 4678899999999999999999999999999964
No 18
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.5e-29 Score=234.59 Aligned_cols=253 Identities=21% Similarity=0.366 Sum_probs=206.8
Q ss_pred eeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccc
Q 009614 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG 321 (531)
Q Consensus 242 ~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~ 321 (531)
++--|+..+++|..|.+|+|||.+ ...+...+.||++.|.|+.|. .+.|++|+.|.+|+|||+++++.+..
T Consensus 202 ClQYDD~kiVSGlrDnTikiWD~n-------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 202 CLQYDDEKIVSGLRDNTIKIWDKN-------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred EEEecchhhhcccccCceEEeccc-------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence 344578889999999999999988 444556789999999999995 66999999999999999999999988
Q ss_pred eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCe
Q 009614 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401 (531)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~ 401 (531)
+-.+...+..+.+.. ...++.+.|..+.+|+..... .....+.+.||...|+.+.|+.. +
T Consensus 273 lihHceaVLhlrf~n------------------g~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd~k-y 332 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSN------------------GYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFDDK-Y 332 (499)
T ss_pred HhhhcceeEEEEEeC------------------CEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccccc-e
Confidence 877766555544432 233567788888899876544 33456778999999999999755 9
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEc
Q 009614 402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC 479 (531)
Q Consensus 402 l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~s 479 (531)
+++++.|.+|++|++.+..+++++. |.-.|.|+++ .++++++|+.|.+|++||+..|.++. +.+|.+-|.++.|
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF- 408 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF- 408 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee-
Confidence 9999999999999999999999996 9999999998 67999999999999999999999985 8899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEEEE--eeeeecccccCCCceeeeEEEe
Q 009614 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQ--NQICLQGKKKLPGKRITGFQVV 529 (531)
Q Consensus 480 pdg~~l~sgs~dg~I~iwd~~~~~l~~~--~~~~~~~~kk~~~~~It~l~f~ 529 (531)
|.+.+++|+.||+|++||+..+.--.- ..+++.. .-.+.+++.++||-
T Consensus 409 -d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~-lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 409 -DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRT-LVEHSGRVFRLQFD 458 (499)
T ss_pred -cCceeeeccccceEEEEecccccCCcccccchHHHh-hhhccceeEEEeec
Confidence 567899999999999999987643211 1223222 22345789999985
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.1e-26 Score=223.79 Aligned_cols=265 Identities=25% Similarity=0.414 Sum_probs=216.2
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
.+..|...+.+++|+|+++++++++.+|.|++|++.... ....+.+|...+..+.|+|++++|++++.||.|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 455778889999999999999999999999999998543 2335678999999999999999999999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
+|++.+++....+..+...+.++.+.+. ..+ .+.+..++.+.+|+... .++...+..|..
T Consensus 77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~--------------~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~ 136 (289)
T cd00200 77 LWDLETGECVRTLTGHTSYVSSVAFSPD--GRI--------------LSSSSRDKTIKVWDVET----GKCLTTLRGHTD 136 (289)
T ss_pred EEEcCcccceEEEeccCCcEEEEEEcCC--CCE--------------EEEecCCCeEEEEECCC----cEEEEEeccCCC
Confidence 9999987776666655555555555543 111 12233467788887763 344666778999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~ 467 (531)
.|.++.|+|++ ++++++.|+.|++||+++++.+..+. |...+.+++|+| +++.+++++.|+.|++||+.+++.+...
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecch
Confidence 99999999988 77777779999999999888888776 777999999999 8889999999999999999988877544
Q ss_pred -CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 468 -DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 468 -~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
.+...+.+++|+|++.++++++.+|.|++|++.+++....++ .+...|++++|+|
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~ 271 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--------GHTNSVTSLAWSP 271 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--------ccCCcEEEEEECC
Confidence 788899999999999988888889999999999887776554 2235788888876
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=7.3e-28 Score=221.40 Aligned_cols=210 Identities=21% Similarity=0.385 Sum_probs=185.9
Q ss_pred ccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (531)
Q Consensus 225 ~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (531)
..+...+.+|...+..+.|+|+|.++|+|+.|..|.+|++......+. .+++|.++|..+.|.+|++.|++++.
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW------VLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee------eeccccceeEeeeeccCCCEEEEecC
Confidence 344556778888899999999999999999999999999765444332 47799999999999999999999999
Q ss_pred CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (531)
Q Consensus 305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
|++|+.||+++|++. ..+
T Consensus 111 Dk~v~~wD~~tG~~~--------------------------------------------------------------rk~ 128 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRI--------------------------------------------------------------RKH 128 (338)
T ss_pred CceEEEEecccceee--------------------------------------------------------------ehh
Confidence 999999999998754 345
Q ss_pred ecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614 385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~ 462 (531)
++|..-|+.+.-+.-| ++.+++.|++++|||+++..+++++..+.+++++.|.. .+..+++|+.|+.|++||++.+.
T Consensus 129 k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d 207 (338)
T KOG0265|consen 129 KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKND 207 (338)
T ss_pred ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCceeeeccccCc
Confidence 6688888888855556 88899999999999999999999999999999999998 88999999999999999999988
Q ss_pred EE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 463 VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 463 ~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
.. .+.+|.+.|+.+..+|+|.++.+-+.|.++++||++.-.
T Consensus 208 ~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 208 GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence 76 589999999999999999999999999999999997543
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1.5e-26 Score=226.78 Aligned_cols=269 Identities=19% Similarity=0.260 Sum_probs=206.6
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
+...|..-|+++.|+|||.++|+.+.||+|.+||-.++.+.-. ...-.+|++.|.+|+|+||++.|+|++.|.+++
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~----l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE----LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE----ecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 4566777888999999999999999999999999887664311 001238999999999999999999999999999
Q ss_pred EEEcccCccccceecCCCCC-eeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 310 VWKVIEHERLDGFDVQDTDP-SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
|||+.+.++++++....... ..+-..+. ... +++.+.++.+-.+++... .+++.+.||.
T Consensus 261 IWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~---------------lItVSl~G~in~ln~~d~----~~~~~i~GHn 320 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDH---------------LITVSLSGTINYLNPSDP----SVLKVISGHN 320 (603)
T ss_pred EEEeeccceEEEeecCCchhceEEEEEEe-CCe---------------EEEEEcCcEEEEecccCC----Chhheecccc
Confidence 99999999888876544310 11111111 111 233444555555555442 3678899999
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-------------------------------e-----------
Q 009614 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-------------------------------F----------- 425 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~-------------------------------~----------- 425 (531)
..|++++.+|++ +|++|+.||.|.-|+..++..-+. +
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence 999999999999 999999999999999864421100 0
Q ss_pred -------------------------------e---------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 009614 426 -------------------------------S---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (531)
Q Consensus 426 -------------------------------~---------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~- 464 (531)
. ......+++++| ++..++.|+.|++|+||.+......
T Consensus 401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKE 479 (603)
T ss_pred eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccc
Confidence 0 011345788888 9999999999999999999986533
Q ss_pred --EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 465 --DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 465 --~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
....|..+|+.++|+||+.+||+|...+.+.+||+.+.+.. ... .--|..+|.+++++|
T Consensus 480 e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~-~~~------w~FHtakI~~~aWsP 540 (603)
T KOG0318|consen 480 EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK-TNR------WAFHTAKINCVAWSP 540 (603)
T ss_pred eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee-cce------eeeeeeeEEEEEeCC
Confidence 57889999999999999999999999999999999988772 211 233568999999988
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.7e-27 Score=209.75 Aligned_cols=269 Identities=16% Similarity=0.218 Sum_probs=226.5
Q ss_pred ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (531)
Q Consensus 227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (531)
+...+.|+.+.+..+.|+-+|++.++++.|.+|++|+...+ ...+++.+|...|..++.+.|...|++|+.|+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeeccccccccccccCCCCc
Confidence 34567888999999999999999999999999999998733 34567999999999999999999999999999
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
.|.+||+.+|+..+.+..+...+..+.|.... ...++++-|..+.+|+.+... .+|++.+..
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees----------------SVv~SgsfD~s~r~wDCRS~s--~ePiQilde 143 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES----------------SVVASGSFDSSVRLWDCRSRS--FEPIQILDE 143 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcc----------------eEEEeccccceeEEEEcccCC--CCccchhhh
Confidence 99999999999999999998888877765432 233567888899999988755 468888988
Q ss_pred CCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 009614 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD- 465 (531)
Q Consensus 387 h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~- 465 (531)
....|.++..... .+++|+.||++|.||++.|+...-+ ...+|+|++|++ +++..++++.|+++++.|-.+++++.
T Consensus 144 a~D~V~Si~v~~h-eIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 144 AKDGVSSIDVAEH-EIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred hcCceeEEEeccc-EEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHH
Confidence 8999999988644 8999999999999999998765433 467899999999 99999999999999999999999884
Q ss_pred ecCCCCceEE--EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 466 YTDIREIVSA--VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 466 ~~~~~~~v~~--v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
+.+|...-+. .++......+++|+.||.|++||+.+..++.++... ....|+.+.+.|
T Consensus 221 YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~-------~~v~v~dl~~hp 280 (307)
T KOG0316|consen 221 YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV-------STVIVTDLSCHP 280 (307)
T ss_pred hcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC-------CceeEEeeeccc
Confidence 7888776544 466667788999999999999999999888765532 112367777776
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=235.30 Aligned_cols=267 Identities=25% Similarity=0.386 Sum_probs=215.9
Q ss_pred ccccceeeeCCCCeEEeeec-CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614 236 DRHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~-dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 314 (531)
.++..++|+..|.++|.|+. -|.+.||++....-.+ ..++|...|++++++|||+++|||++||.|+|||..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl-------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL-------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceee-------eccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 34456789999999999765 4899999998544333 257999999999999999999999999999999999
Q ss_pred cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC-CCCeeE
Q 009614 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLD 393 (531)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~ 393 (531)
.+-|..++..|...+..+.|...... .++.+-|+++..|+...++. .+++... .-...|
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~~----------------llssSLDGtVRAwDlkRYrN----fRTft~P~p~Qfsc 440 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGNV----------------LLSSSLDGTVRAWDLKRYRN----FRTFTSPEPIQFSC 440 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCCE----------------EEEeecCCeEEeeeecccce----eeeecCCCceeeeE
Confidence 99999999999998888888765532 35667889999999876543 4455443 235679
Q ss_pred EEEcCCC-eEEEEeCCC-cEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-eEEEecCC
Q 009614 394 LSWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDI 469 (531)
Q Consensus 394 l~~sp~~-~l~s~s~Dg-~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-~~~~~~~~ 469 (531)
++..|.| .+.+|+.|. .|.+|++++|+.+-.+. |.++|.+++|+| ++..|+++|.|.+||+||+-.. ..+....+
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i 519 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEI 519 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEee
Confidence 9999999 666777665 49999999999999996 999999999999 9999999999999999999765 34456667
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee---ecc---------cccCCCceeeeEEEee
Q 009614 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC---LQG---------KKKLPGKRITGFQVVK 530 (531)
Q Consensus 470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~---~~~---------~kk~~~~~It~l~f~p 530 (531)
...+++++|+|||+.|++++.||.|.+||++.+.....+... ..| ++...+|.+|.|.|++
T Consensus 520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa 592 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA 592 (893)
T ss_pred ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC
Confidence 788999999999999999999999999999987766433210 111 1234568889998874
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.2e-26 Score=224.81 Aligned_cols=209 Identities=25% Similarity=0.426 Sum_probs=182.4
Q ss_pred ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccc----------------------------------cc
Q 009614 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------SL 274 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~----------------------------------~~ 274 (531)
.++.+|+.++.++.|+..|.+|++++.|+++.+||..++..... .-
T Consensus 270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC
Confidence 35788899999999999999999999999999999965432110 11
Q ss_pred ccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccc
Q 009614 275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (531)
Q Consensus 275 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (531)
.+..++.+|.++|.+|.|+|.|.+|+|++.|++++||+......
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~------------------------------------ 393 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS------------------------------------ 393 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc------------------------------------
Confidence 12346889999999999999999999999999999999865543
Q ss_pred ccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC----------eEEEEeCCCcEEEEECCCCeEEEE
Q 009614 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----------FLLSSSADKTVRLWQVGIDRCLRV 424 (531)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~----------~l~s~s~Dg~V~lwdl~~~~~l~~ 424 (531)
.+.+++|...|..+.|+|.| .|++++.|++|++||+..+.++..
T Consensus 394 --------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~ 447 (524)
T KOG0273|consen 394 --------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT 447 (524)
T ss_pred --------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence 34456677778788877732 799999999999999999999999
Q ss_pred e-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 425 F-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 425 ~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
| .|..+|.+++|+| ++.|+|+|+.||.|.||+++++++++.....+.|..++|+.+|.+|..+-.||.+++.|++
T Consensus 448 f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 448 LMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9 6999999999999 9999999999999999999999999888888889999999999999999999999999875
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=241.29 Aligned_cols=251 Identities=24% Similarity=0.433 Sum_probs=213.6
Q ss_pred eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc-
Q 009614 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV- 313 (531)
Q Consensus 235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~- 313 (531)
...+.++.|+++|.++++++.++.+++|+...... ...+++.+|...|.+++|+|+++++++|+.|++|+|||+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 45666789999999999999999999999954432 133456899999999999999999999999999999999
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 393 (531)
..+..++.+..|...+.++.|.+.. .. .+.++.|..+.+|+.+. .+++..+.+|.+.|++
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~~---------------i~Sgs~D~tvriWd~~~----~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDG-NL---------------LVSGSDDGTVRIWDVRT----GECVRKLKGHSDGISG 293 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCC-CE---------------EEEecCCCcEEEEeccC----CeEEEeeeccCCceEE
Confidence 5557888999999988888887766 32 35678899999999988 5678999999999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEee-cCC--ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 009614 394 LSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (531)
Q Consensus 394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~--~l~~~~-h~~--~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~ 466 (531)
++|++++ +|++++.|+.|++||+.++. ++..+. +.. ++++++|+| ++.++++++.|+.+++||+..+.++ .+
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee
Confidence 9999999 99999999999999999999 556654 333 699999999 9999999999999999999988776 46
Q ss_pred cCCCCc---eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 467 TDIREI---VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 467 ~~~~~~---v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
..|... +.+...++.+.++++|+.|+.|++||+.++..++..+.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 666654 445566789999999999999999999998877765543
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.3e-27 Score=220.22 Aligned_cols=243 Identities=19% Similarity=0.311 Sum_probs=207.3
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
.+.+|.+.+..++|+..|.++|+++.|-.+++||..+. ..+.+.+.+|...|.+++|-|.|.++++++.|.+|+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHH------HHHHHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence 46778888889999999999999999999999998742 334456789999999999999999999999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
.|++.++-++..+..+..-+..+ .++..+. ...+++.+..+.+|..... .....+..|..
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v--~v~~DGt--------------i~As~s~dqtl~vW~~~t~----~~k~~lR~hEh 278 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMV--RVNQDGT--------------IIASCSNDQTLRVWVVATK----QCKAELREHEH 278 (406)
T ss_pred EEecccceeEEeccCchHhEEEE--EecCCee--------------EEEecCCCceEEEEEeccc----hhhhhhhcccc
Confidence 99999999999998777633332 2222222 2345667778888876653 23466788999
Q ss_pred CeeEEEEcC--------------CC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCe
Q 009614 390 EVLDLSWSK--------------NG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452 (531)
Q Consensus 390 ~I~~l~~sp--------------~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~ 452 (531)
+|.+++|.| ++ ++.+++.|++|++||+.++.|+.++. |...|..++|+| .|+||+++..|++
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKT 357 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCc
Confidence 999999976 22 88999999999999999999999885 999999999999 9999999999999
Q ss_pred EEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614 453 VRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 453 I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 499 (531)
+++||+.+++++. +..|..-++++.|+.+..++++|+-|.++++|.-
T Consensus 358 lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 358 LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999885 7788999999999999999999999999999964
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.7e-27 Score=233.56 Aligned_cols=250 Identities=21% Similarity=0.292 Sum_probs=218.7
Q ss_pred eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
+.++|.++.|||...+++++-.+|.|.||++.++. +.+.+.-..-+|++.+|-+..+++++|++|..|+||+.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 56889999999999999999999999999998544 33456667789999999999999999999999999999
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 393 (531)
.+++.+..+..|..-+.++...|..+ ..++.+.|..+.+|+-... -...+++.||...|.+
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P----------------~vLtsSDDm~iKlW~we~~---wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLP----------------YVLTSSDDMTIKLWDWENE---WACEQTFEGHEHYVMQ 145 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCC----------------eEEecCCccEEEEeeccCc---eeeeeEEcCcceEEEE
Confidence 99999999999999999888776543 2356677778888865432 2457889999999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeC-CCCEEEEEeCCCeEEEEeCCCCeEEE-ecC
Q 009614 394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVVD-YTD 468 (531)
Q Consensus 394 l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~-d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~ 468 (531)
++|+|.. .+++++-|++|++|.+.+..+..++. |...|+||.|-|. |..||++|+.|.+|+|||..+..++. +.+
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG 225 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG 225 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence 9999976 99999999999999999999988886 9999999999872 23599999999999999999999884 888
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 469 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
|...|..++|+|.-..+++|+.||+++||+..+-++.....
T Consensus 226 Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 226 HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence 99999999999999999999999999999998877765544
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.3e-27 Score=232.24 Aligned_cols=268 Identities=19% Similarity=0.300 Sum_probs=223.2
Q ss_pred cccceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614 228 LGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (531)
+-++.+|...++++.|.| .+.+|++|+.|+.|+||++... ..+.+++.+|..+|.+++|+++|..++|++.|+
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 345778889999999999 9999999999999999998752 334567999999999999999999999999999
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
.|++||+++|+++..+... ..+.|+.+.++..+ ..+.+..++.++.|+.+... .++++..
T Consensus 281 ~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n---------------~fl~G~sd~ki~~wDiRs~k----vvqeYd~ 340 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQN---------------IFLVGGSDKKIRQWDIRSGK----VVQEYDR 340 (503)
T ss_pred eeeeeccccceEEEEEecC-CCceeeecCCCCCc---------------EEEEecCCCcEEEEeccchH----HHHHHHh
Confidence 9999999999998887653 34667777666533 23567888899999998854 5788889
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~ 463 (531)
|.+.|..+.|-++| ++++++.|++++||+.+..-.++... +.....||..+| .++++++-+.|+.|.||.+...-.
T Consensus 341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccc
Confidence 99999999999999 99999999999999999888777664 445667899999 999999999999999999765432
Q ss_pred E----EecCCC--CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 464 V----DYTDIR--EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 464 ~----~~~~~~--~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
. .+.+|. +--..+.|||||.+|++|..||.+.+||.++-+++.+++ .+.+.++++.|.|
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk--------ah~~~ci~v~wHP 484 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK--------AHDQPCIGVDWHP 484 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc--------cCCcceEEEEecC
Confidence 2 245554 345678999999999999999999999999988876543 4456788888876
No 29
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=9.5e-26 Score=235.45 Aligned_cols=216 Identities=15% Similarity=0.232 Sum_probs=172.3
Q ss_pred cceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCc
Q 009614 230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGT 307 (531)
Q Consensus 230 ~~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~ 307 (531)
.+.+|.+.|.+++|+| ++.+|++|+.|++|+||++...............+.+|...|.+++|+|++ ++|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 3567888899999999 889999999999999999975432111122345688999999999999975 69999999999
Q ss_pred EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (531)
|+|||+.+++. +..+.+|
T Consensus 150 VrIWDl~tg~~--------------------------------------------------------------~~~l~~h 167 (493)
T PTZ00421 150 VNVWDVERGKA--------------------------------------------------------------VEVIKCH 167 (493)
T ss_pred EEEEECCCCeE--------------------------------------------------------------EEEEcCC
Confidence 99999976542 3345678
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCc-eEEEEEeeCCCCEEEEEe----CCCeEEEEeCCC
Q 009614 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY-VTSVAFNPVDDNYFISGS----IDGKVRIWEVRR 460 (531)
Q Consensus 388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~-V~sv~fsp~d~~~l~sgs----~Dg~I~Iwd~~~ 460 (531)
...|.+++|+|++ +|++++.|++|++||+++++.+..+. |.+. +..+.|.| ++..+++++ .|+.|++||+++
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCC
Confidence 8999999999999 99999999999999999999887775 6544 45778998 666666654 478999999987
Q ss_pred Ce-EEEec--CCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEEEEe
Q 009614 461 CQ-VVDYT--DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 461 ~~-~~~~~--~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~~l~~~~ 508 (531)
.. .+... .....+....|++++++|++|+. ||.|++||+.+++++...
T Consensus 247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 53 33322 23345666789999999999884 999999999998876543
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=1.1e-26 Score=238.15 Aligned_cols=204 Identities=23% Similarity=0.378 Sum_probs=186.1
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
.+.+|.++|....|+|+.++|++++.|++|++|.+.+.. ..-.++||..+|+++.|+|.|-|+|||+.|++.+
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccce-------eEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 478899999999999999999999999999999998443 3345889999999999999999999999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
+|........+.+..+...+.|+.|.|+.. +..+++.|.++.+|+... +..++.|.||.+
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~----------------Y~aTGSsD~tVRlWDv~~----G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSN----------------YVATGSSDRTVRLWDVST----GNSVRIFTGHKG 578 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCccc----------------ccccCCCCceEEEEEcCC----CcEEEEecCCCC
Confidence 999999999999999999999999988763 446788999999999876 345889999999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~ 461 (531)
+|.+|+|+|+| +|++|+.|+.|++||+.++..+..+. |.+.|.+|.|+. ++..||+|+.|.+|++||+..-
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhh
Confidence 99999999999 99999999999999999999888774 999999999999 9999999999999999998753
No 31
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=214.21 Aligned_cols=256 Identities=24% Similarity=0.364 Sum_probs=211.5
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccccccc-ceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYT-GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~-~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 314 (531)
..+.|..|+|||+++++|+.||.|.||++.+++....-.+. ...+.-|..+|.|+.|+.|...||+|+.||.|++|.+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 34456889999999999999999999999876543211111 12355688999999999999999999999999999999
Q ss_pred cCcccccee-cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614 315 EHERLDGFD-VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (531)
Q Consensus 315 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 393 (531)
+|.++..+. .+...+.|+.|+.+... .++++-|..+.+...+. ++.++++.||...|+.
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~Sq----------------iLS~sfD~tvRiHGlKS----GK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQ----------------ILSASFDQTVRIHGLKS----GKCLKEFRGHSSYVNE 353 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcch----------------hhcccccceEEEecccc----chhHHHhcCccccccc
Confidence 999999997 77788888888766543 24455555666655554 5668899999999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-
Q 009614 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD- 468 (531)
Q Consensus 394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~- 468 (531)
..|.++| ++++++.||+|++|+..+..|+.+|. ...+|+++..-|.+...+++|...++|+|.++...-+..+..
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSG 433 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSG 433 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccC
Confidence 9999999 99999999999999999999999996 557899999999888999999999999999998544433322
Q ss_pred --CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 469 --IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 469 --~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
..+...+.+.+|.|.++.+.+.|+.++.|.+.+|++.....++
T Consensus 434 kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 434 KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence 2345677889999999999999999999999999998877654
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-25 Score=204.59 Aligned_cols=208 Identities=24% Similarity=0.399 Sum_probs=175.1
Q ss_pred cccceeeeccccceeeeCC-CCeEEeeecCCeEEEEeCCCCcccccccccceEE-cccCCCEEEEEEccCCCEEEEEeCC
Q 009614 228 LGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGED 305 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~D 305 (531)
.+.+.+|.+++-.++|+|. |..||+|+.|+.|+||+..... . ..+...+ .+|+..|+.++|+|.|++||+|+.|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-s---~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-S---WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-c---EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 3456677788888999999 9999999999999999988421 1 1111122 3799999999999999999999999
Q ss_pred CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
.++.||.-..++. +.+.++.
T Consensus 83 ~t~~Iw~k~~~ef------------------------------------------------------------ecv~~lE 102 (312)
T KOG0645|consen 83 ATVVIWKKEDGEF------------------------------------------------------------ECVATLE 102 (312)
T ss_pred ceEEEeecCCCce------------------------------------------------------------eEEeeee
Confidence 9999997543321 2366789
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC---eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~---~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
||...|.+++|+++| +|++|+.|+.|-||.+..+ .++..+. |...|..+.|+| ...+|++++.|.+|++|.-..
T Consensus 103 GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 103 GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecC
Confidence 999999999999999 9999999999999999754 4555564 999999999999 899999999999999998773
Q ss_pred -C--eEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 461 -C--QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 461 -~--~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
. .++ .+.+|...|.+++|+|.|..|++++.|++++||-+.
T Consensus 182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 2 333 688899999999999999999999999999999854
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=211.12 Aligned_cols=255 Identities=19% Similarity=0.219 Sum_probs=205.9
Q ss_pred ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (531)
Q Consensus 227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (531)
....+..|.+.+-+++.+|+.+++|+|+.|..-.||+..++... -++.+|+..|+++.|+.+|.+||||+.+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-------~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-------GELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-------eEecCCCCceEEEEEccCceEEEecCCCc
Confidence 34467778899999999999999999999999999999976632 35889999999999999999999999999
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
.|+||+..++.....+...-..+.-+.|.+. . ...+.++.++.++.|....- ...+.+.|
T Consensus 129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp~--a--------------~illAG~~DGsvWmw~ip~~----~~~kv~~G 188 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR--A--------------HILLAGSTDGSVWMWQIPSQ----ALCKVMSG 188 (399)
T ss_pred cEEEEEcccCceEEEeecccCceEEEEeccc--c--------------cEEEeecCCCcEEEEECCCc----ceeeEecC
Confidence 9999999999877666533333333333331 1 12356778888888876542 45778899
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---------------------------------------
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------------------------------------- 426 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--------------------------------------- 426 (531)
|+.++++=.|.|+| +++++..||+|++|++.+++++..+.
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV 268 (399)
T ss_pred CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence 99999999999999 99999999999999999988776543
Q ss_pred -------------cCCceEEEEEeeC--CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC
Q 009614 427 -------------HNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (531)
Q Consensus 427 -------------h~~~V~sv~fsp~--d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d 491 (531)
+...+.||.+.|. .-.++|+|+.||+|.|||+...++.....|...|+.+.|-+ ..+|++++.+
T Consensus 269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~ 347 (399)
T KOG0296|consen 269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN 347 (399)
T ss_pred EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC
Confidence 0011122222221 33578899999999999999999999999999999999999 7899999999
Q ss_pred CcEEEEeCCCCeEEEEee
Q 009614 492 GNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 492 g~I~iwd~~~~~l~~~~~ 509 (531)
|+|++||.++|+++..+.
T Consensus 348 g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 348 GKVRQWDARTGQLKFTYT 365 (399)
T ss_pred ceEEeeeccccceEEEEe
Confidence 999999999999987665
No 34
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=215.61 Aligned_cols=292 Identities=19% Similarity=0.245 Sum_probs=219.6
Q ss_pred cCCcceeeeecCCCceeE-EccCCCchhhhhhcccccCCCCcccccccccCCCCCccccccCCccccccchhhHHhhhhh
Q 009614 142 KDHAACRIDDWGKGADLV-VSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKV 220 (531)
Q Consensus 142 ~~~~~~~~~~~d~g~~~~-~~~~~~~~~~~~~~lr~v~~~~~~~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~k~~ 220 (531)
.+...|.++|+..|...+ ++.-...++... .-+. +..+....+.+-.- .+|+..+.+...
T Consensus 15 ~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl---~~l~-~~yllsaq~~rp~l----~vw~i~k~~~~~----------- 75 (476)
T KOG0646|consen 15 FDPINCIVWDLRTGTSLLQYKGSYLAQAASL---TALN-NEYLLSAQLKRPLL----HVWEILKKDQVV----------- 75 (476)
T ss_pred CCCcceeEEecCCCceeEEecCcccccchhh---hhhc-hhheeeecccCccc----cccccCchhhhh-----------
Confidence 355669999999999977 444423222221 1111 23343444433211 134333322111
Q ss_pred ccccccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE
Q 009614 221 KRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA 300 (531)
Q Consensus 221 ~~~w~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La 300 (531)
......+.+.+++-+|+|.+++.|+..|.|++|.+..+.. ...+.+|-.+|+|+.|+-||.+|+
T Consensus 76 ---------q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-------L~v~~aHYQ~ITcL~fs~dgs~ii 139 (476)
T KOG0646|consen 76 ---------QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-------LNVLSAHYQSITCLKFSDDGSHII 139 (476)
T ss_pred ---------hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH-------HHHHHhhccceeEEEEeCCCcEEE
Confidence 0011235677899999999999999999999999986553 334788999999999999999999
Q ss_pred EEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (531)
Q Consensus 301 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (531)
|||.||.|.+|.+...-. .+ .+. ..+|
T Consensus 140 TgskDg~V~vW~l~~lv~-----------------a~------------------------~~~------------~~~p 166 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVS-----------------AD------------------------NDH------------SVKP 166 (476)
T ss_pred ecCCCccEEEEEEEeecc-----------------cc------------------------cCC------------Cccc
Confidence 999999999999743210 00 000 1367
Q ss_pred eeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614 381 LHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (531)
Q Consensus 381 ~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd 457 (531)
++.+..|+-+|+++...+.| +|+|++.|.++++||+..+..+.++..+..+.+++.+| .+..++.|+.+|+|.+.+
T Consensus 167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeee
Confidence 88999999999999998875 99999999999999999999999999999999999999 899999999999999988
Q ss_pred CCCCe-----------------EEEecCCCC--ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614 458 VRRCQ-----------------VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (531)
Q Consensus 458 ~~~~~-----------------~~~~~~~~~--~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~ 518 (531)
+.+.. ...+.+|.+ .|++++++-||.+|++|+.||+|+|||+.+.+++.....
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~-------- 317 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT-------- 317 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh--------
Confidence 75422 223677877 999999999999999999999999999999988865542
Q ss_pred CCceeeeEEEee
Q 009614 519 PGKRITGFQVVK 530 (531)
Q Consensus 519 ~~~~It~l~f~p 530 (531)
....||.+++.|
T Consensus 318 ~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 318 SKGPVTNLQINP 329 (476)
T ss_pred hccccceeEeec
Confidence 125778888765
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=202.44 Aligned_cols=260 Identities=16% Similarity=0.199 Sum_probs=213.2
Q ss_pred eeeeecCCCceeEEccCCCchhhhhhcccccCC---CCcccccccccCCCCCccccccCCccccccchhhHHhhhhhccc
Q 009614 147 CRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRG 223 (531)
Q Consensus 147 ~~~~~~d~g~~~~~~~~~~~~~~~~~~lr~v~~---~~~~~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~k~~~~~ 223 (531)
-+|+++-.+..|.|+....++|.++ +|.|++ ++.|+.+.|+.+.. +++....+++...
T Consensus 39 vriw~~~~~~s~~ck~vld~~hkrs--VRsvAwsp~g~~La~aSFD~t~~-----Iw~k~~~efecv~------------ 99 (312)
T KOG0645|consen 39 VRIWSTSSGDSWTCKTVLDDGHKRS--VRSVAWSPHGRYLASASFDATVV-----IWKKEDGEFECVA------------ 99 (312)
T ss_pred EEEEecCCCCcEEEEEeccccchhe--eeeeeecCCCcEEEEeeccceEE-----EeecCCCceeEEe------------
Confidence 4677777788899999999999999 999999 99999999999888 6665555544433
Q ss_pred cccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe
Q 009614 224 WLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (531)
Q Consensus 224 w~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs 303 (531)
.+.+|...|.+++|+++|.+||++++|+.|-||.+.... .+.+...++.|+..|..+.|+|...+|++++
T Consensus 100 ------~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd----Efec~aVL~~HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 100 ------TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD----EFECIAVLQEHTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred ------eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC----cEEEEeeeccccccccEEEEcCCcceeEEec
Confidence 456677777789999999999999999999999988322 3445567899999999999999999999999
Q ss_pred CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (531)
Q Consensus 304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (531)
.|.+|++|+-..+.. -..+++
T Consensus 170 YDnTIk~~~~~~ddd-----------------------------------------------------------W~c~~t 190 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDD-----------------------------------------------------------WECVQT 190 (312)
T ss_pred cCCeEEEEeecCCCC-----------------------------------------------------------eeEEEE
Confidence 999999998542110 012677
Q ss_pred eecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (531)
Q Consensus 384 ~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~ 462 (531)
+.+|...|.+++|+|.| .|++++.|++|+||-..+. -...|+..+..+.|. ...|++++.|+.|++|.-....
T Consensus 191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred ecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec---ccceEeccCCCEEEEEEecCCC
Confidence 89999999999999999 9999999999999986622 122378899999996 4689999999999999876531
Q ss_pred ------EE--EecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCC
Q 009614 463 ------VV--DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 463 ------~~--~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~ 500 (531)
++ .-..|...|+++.|.|. .+.|++|+.||.|++|.+.
T Consensus 265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11 23567789999999995 6789999999999999874
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=2.7e-24 Score=240.97 Aligned_cols=277 Identities=12% Similarity=0.130 Sum_probs=208.9
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccc-cccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV 308 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I 308 (531)
+..|...+.+++|+|+|.++|+|+.|+.|+||+.......... ......+. +...|.+++|++ ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4456677888999999999999999999999997642111100 01112233 456899999987 57899999999999
Q ss_pred EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
++||+.+++.+..+..+...+.++.|.+.... ..++++.++.+.+|+.... ..+..+..+
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~---------------~L~Sgs~Dg~v~iWd~~~~----~~~~~~~~~- 617 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPT---------------LLASGSDDGSVKLWSINQG----VSIGTIKTK- 617 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCC---------------EEEEEcCCCEEEEEECCCC----cEEEEEecC-
Confidence 99999998888878777777777777643322 2356778889999998653 334555544
Q ss_pred CCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCe-EEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC---
Q 009614 389 SEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--- 461 (531)
Q Consensus 389 ~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~-~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~--- 461 (531)
..|.++.|++ ++ +|++|+.|+.|++||+++.. .+..+ .|...|+++.|. ++.+|++++.|++|+|||++..
T Consensus 618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccc
Confidence 6799999965 56 99999999999999998765 34444 599999999996 5789999999999999999753
Q ss_pred ---eE-EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeec----cc-ccCCCceeeeEEEee
Q 009614 462 ---QV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ----GK-KKLPGKRITGFQVVK 530 (531)
Q Consensus 462 ---~~-~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~----~~-kk~~~~~It~l~f~p 530 (531)
.. ..+.+|...+..++|+|++.+|++|+.||.|++|+......+..+..... +. ...+...|.+++|+|
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 23 35788999999999999999999999999999999887665543332111 10 122345688888875
No 37
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=218.91 Aligned_cols=220 Identities=20% Similarity=0.313 Sum_probs=186.0
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVR 309 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~ 309 (531)
+....+.+.++.|..||.++|+|...|.|+|+|++... ....+.+|+.+|..+.|+| ++..|++|++|+.++
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH-------HHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 33445677789999999999999999999999965321 2235789999999999999 556788999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
+||+.+... ...+.+|+.
T Consensus 137 ~~d~s~a~v--------------------------------------------------------------~~~l~~htD 154 (487)
T KOG0310|consen 137 YWDLSTAYV--------------------------------------------------------------QAELSGHTD 154 (487)
T ss_pred EEEcCCcEE--------------------------------------------------------------EEEecCCcc
Confidence 999876531 235678999
Q ss_pred CeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-eEEE
Q 009614 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVD 465 (531)
Q Consensus 390 ~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-~~~~ 465 (531)
.|.|.+|+|.. .++||+.||+|++||++.. ..+..+.|..+|..|.+-| .+..|++++. ..|+|||+.+| +.+.
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLT 232 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehh
Confidence 99999999976 8999999999999999987 8888999999999999999 8899998875 58999999965 4443
Q ss_pred -ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 466 -YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 466 -~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
...|...|||+++..++..|++|+.|+.|++||+.+-+.+..+..+ ..|.+++.+|
T Consensus 233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------~pvLsiavs~ 289 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------GPVLSIAVSP 289 (487)
T ss_pred hhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---------cceeeEEecC
Confidence 5559999999999999999999999999999999998888877654 5667766665
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=231.35 Aligned_cols=246 Identities=20% Similarity=0.279 Sum_probs=212.0
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 315 (531)
.++..++|+|...+++++-..|.|++||++- ......|..|.++|..|.|+|++.+++|||+|-.|+||+..+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM-------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhh-------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 5666799999999999999999999999982 223446889999999999999999999999999999999999
Q ss_pred CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 395 (531)
.+++.++..|...+..+.|...- -.+++.+.|.++.+|+... .+.+..+.||...|.|..
T Consensus 83 rrclftL~GHlDYVRt~~FHhey----------------PWIlSASDDQTIrIWNwqs----r~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEY----------------PWILSASDDQTIRIWNWQS----RKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ceehhhhccccceeEEeeccCCC----------------ceEEEccCCCeEEEEeccC----CceEEEEecCceEEEeec
Confidence 99999998888877777665432 3457788999999998776 466899999999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEECCCCe---------------------------EE--EEe-ecCCceEEEEEeeCCCCEE
Q 009614 396 WSKNG-FLLSSSADKTVRLWQVGIDR---------------------------CL--RVF-SHNNYVTSVAFNPVDDNYF 444 (531)
Q Consensus 396 ~sp~~-~l~s~s~Dg~V~lwdl~~~~---------------------------~l--~~~-~h~~~V~sv~fsp~d~~~l 444 (531)
|+|.. .++++|-|.+||+||+..-+ .+ ..+ +|.-.|+-++|+| .-.+|
T Consensus 143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-Tlpli 221 (1202)
T KOG0292|consen 143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLI 221 (1202)
T ss_pred cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceE
Confidence 99977 99999999999999985210 11 111 3888999999999 88999
Q ss_pred EEEeCCCeEEEEeCCCCeEE---EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 445 ISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 445 ~sgs~Dg~I~Iwd~~~~~~~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
++|+.|..|++|.+...+.. ...+|.+.|+++-|+|...+|++.+.|++|++||+...+.++++.
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 99999999999999876544 578999999999999999999999999999999999988888774
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=2.9e-25 Score=199.28 Aligned_cols=212 Identities=19% Similarity=0.380 Sum_probs=182.5
Q ss_pred CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCC
Q 009614 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327 (531)
Q Consensus 248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 327 (531)
-+|++++.|.+|++|+..++. +..+++...+.|+.+...|+++.||+|+. ..||+||+.++..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-------C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--------- 73 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-------CSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--------- 73 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-------EEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC---------
Confidence 368899999999999988544 44567777889999999999999998875 5799999987652
Q ss_pred CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEe
Q 009614 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s 406 (531)
.|+.++.+|++.|+.+.|..+| .+++|+
T Consensus 74 ---------------------------------------------------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs 102 (311)
T KOG0315|consen 74 ---------------------------------------------------NPVATFEGHTKNVTAVGFQCDGRWMYTGS 102 (311)
T ss_pred ---------------------------------------------------CceeEEeccCCceEEEEEeecCeEEEecC
Confidence 3578899999999999999999 999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEEccCCCE
Q 009614 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKG 484 (531)
Q Consensus 407 ~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~ 484 (531)
.||+++|||++...+.+.|.|..+|++|..+| +..-|++|..+|.|+|||+....+.. .......|.++...|||.+
T Consensus 103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred CCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 99999999999999999999999999999999 88899999999999999999876553 4455678999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 485 GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 485 l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
|+.+...|++++|++-+.+.... +.+..|.+.+...|+...|+|
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~--l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASE--LEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred EEEecCCccEEEEEccCCCcccc--ceEhhheecccceEEEEEECC
Confidence 99999999999999987543332 334445677888999988887
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=228.05 Aligned_cols=247 Identities=21% Similarity=0.293 Sum_probs=206.0
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCcEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVR 309 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~ 309 (531)
+.+|.+.+.++....+|-+|++|++|.++++|.+++... ...+.+...+|+..|.+|+++..+ .+|+++|.|++|+
T Consensus 361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~---~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS---KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc---hhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 566777777877667888999999999999998844332 223344567999999999998754 4899999999999
Q ss_pred EEEcccCccc---------cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614 310 VWKVIEHERL---------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (531)
Q Consensus 310 iWd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (531)
+|++...+.. .....|...+.++...++.. ...+++.|.+..+|.... ...
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk----------------LiAT~SqDktaKiW~le~----~~l 497 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK----------------LIATGSQDKTAKIWDLEQ----LRL 497 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecCCCc----------------eEEecccccceeeecccC----ceE
Confidence 9999762211 12234555666666665542 235678888999998874 345
Q ss_pred eeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (531)
Q Consensus 381 ~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~ 458 (531)
..++.||...|.++.|+|.. .++|+|.|++|+||.+.+..|+++|. |...|..+.|-. ++..|++++.||-|+||++
T Consensus 498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNI 576 (775)
T ss_pred EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEec
Confidence 78999999999999999988 99999999999999999999999997 999999999998 9999999999999999999
Q ss_pred CCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614 459 RRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 459 ~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~ 501 (531)
.++.++ .+..|.+.|++++.+|....+++|+.||.|.+|.=.+
T Consensus 577 kt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 577 KTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999988 5899999999999999999999999999999996443
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=231.27 Aligned_cols=248 Identities=24% Similarity=0.354 Sum_probs=209.1
Q ss_pred cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (531)
...+.+|...+..++|+|++.++++|+.|++|+||++.. .....+++++|...|++++|+|+|+++++|+.|++
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~------~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD------DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccC------CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence 334567888889999999999999999999999999943 22344578999999999999999999999999999
Q ss_pred EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (531)
|+|||+.++++...+..+...+..+.+..+.. ..+.++.++.+.+|+....... .+..+.++
T Consensus 270 vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~----------------~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~ 331 (456)
T KOG0266|consen 270 VRIWDVRTGECVRKLKGHSDGISGLAFSPDGN----------------LLVSASYDGTIRVWDLETGSKL--CLKLLSGA 331 (456)
T ss_pred EEEEeccCCeEEEeeeccCCceEEEEECCCCC----------------EEEEcCCCccEEEEECCCCcee--eeecccCC
Confidence 99999999999999999999888887766553 2244577899999999886643 34555665
Q ss_pred CCC--eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCc---eEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 388 SSE--VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY---VTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 388 ~~~--I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~---V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
... ++++.|+|++ +|++++.|+++++||+..+.++..+. |... +.+...++ .+.++++|+.|+.|++||+.+
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-CCCeEEEEeCCceEEEEeCCc
Confidence 555 9999999999 99999999999999999999988886 5553 34445566 899999999999999999998
Q ss_pred CeEE-EecCC-CCceEEEEEccCCCEEEEEe--CCCcEEEEeCC
Q 009614 461 CQVV-DYTDI-REIVSAVCYCPDGKGGIVGT--MTGNCRFYDIK 500 (531)
Q Consensus 461 ~~~~-~~~~~-~~~v~~v~~spdg~~l~sgs--~dg~I~iwd~~ 500 (531)
+..+ .+.+| ...+..+.|+|..+++++++ .|+.+++|...
T Consensus 411 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 411 GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 7666 57788 88999999999999999998 68889999754
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=212.36 Aligned_cols=269 Identities=19% Similarity=0.266 Sum_probs=192.1
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
.+..|.+.|--+.|+++|++||++++|.+..||++..... +...+++.+|..+|.-+.||||.++|++|+.|..+.
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 4555666777789999999999999999999998874332 445567899999999999999999999999999999
Q ss_pred EEEcccCccccceecC-CCCCeeEEEeecCCccee--------eeeccccccc--------cccccccCCCceEEEeCC-
Q 009614 310 VWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLI--------PIDVDKEKID--------KTKSLRKSSDLTCVVLPP- 371 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~- 371 (531)
+||+.+|.....+... ...+.+..|.++....+. .++.++.... +...+..+.|+..++.-.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9999999988777654 455666777666544222 2222222111 111222223332221111
Q ss_pred -ccccc---cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cC--CceEEEEEeeCCCCE
Q 009614 372 -KVFRL---LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HN--NYVTSVAFNPVDDNY 443 (531)
Q Consensus 372 -~~~~~---~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~--~~V~sv~fsp~d~~~ 443 (531)
+...+ ..+.-..+.....+|++++.+.++ ++++.-.+..|.+||+.....++.+. |. ..+-.-||--.+..+
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 00000 011111133445678888888888 66677778888888888766665553 43 445555676556789
Q ss_pred EEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q 009614 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 444 l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~~ 502 (531)
+++||.|++|+||+..+++++ .+.+|...|++|+|+|. ..++|+|+.||+||||.....
T Consensus 455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999988 59999999999999994 568899999999999987643
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=7.1e-25 Score=222.85 Aligned_cols=250 Identities=19% Similarity=0.275 Sum_probs=202.8
Q ss_pred cccccee-eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614 236 DRHGSAT-LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (531)
Q Consensus 236 ~~~~s~~-fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 314 (531)
+.+..++ +-|+.+++|+++..+.+++|+..+... +.+.||+..|.++....+|.+|+||+.|+++++|.+.
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC--------QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCCce--------EEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 3344443 568889999999999999997764332 3689999999999966688899999999999999884
Q ss_pred cCc----cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc-ee----Eee
Q 009614 315 EHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP-LH----EFQ 385 (531)
Q Consensus 315 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~ 385 (531)
++. ++.....+...+.++.+... .....++++.|..+.+|+...-.....+ +. +..
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~---------------~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKL---------------GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred CCcchhhhhhhhcccccccceeeeccc---------------CccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 433 23333444454554444222 2334467788899999987662222111 11 345
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~ 463 (531)
.|...|++++++|+. +++|||.|++.+||++.....+.++. |...|+||.|+| .++.++++|.|++|+||.+.+..+
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSC 539 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSC 539 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecccee
Confidence 699999999999999 99999999999999999989999986 999999999999 889999999999999999999999
Q ss_pred EE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 464 VD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 464 ~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
++ +.+|...|..+.|-.+|+.|++++.||.++||+++++.++..+.
T Consensus 540 lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 540 LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence 95 77899999999999999999999999999999999999887654
No 44
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=186.21 Aligned_cols=259 Identities=19% Similarity=0.310 Sum_probs=198.1
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc--------ccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--------LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~--------~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (531)
..+.+++|+|.|.+.|+|+...+.+|-.+...... .......+.-+.|.+.|+|.+|+|+|.+||+|+.|++
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 35667999999999999999999999866532211 0011122334679999999999999999999999999
Q ss_pred EEEEEcccCccc-----cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614 308 VRVWKVIEHERL-----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (531)
Q Consensus 308 I~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (531)
|++.......+. .++..+...+.-+.|.......-. .....+..+-.+++-+... +++++
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-----------il~s~gagdc~iy~tdc~~----g~~~~ 177 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-----------ILASAGAGDCKIYITDCGR----GQGFH 177 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-----------EEEecCCCcceEEEeecCC----CCcce
Confidence 999876543322 234555666666666544332211 1112334455555555544 56789
Q ss_pred EeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---c-----CCceEEEEEeeCCCCEEEEEeCCCeE
Q 009614 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---H-----NNYVTSVAFNPVDDNYFISGSIDGKV 453 (531)
Q Consensus 383 ~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h-----~~~V~sv~fsp~d~~~l~sgs~Dg~I 453 (531)
.+.+|++.|..+- +=++ ++++|+.|++|++||++-..++.++. | ...|.+++..| .+++|++|-.|...
T Consensus 178 a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc 255 (350)
T KOG0641|consen 178 ALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSC 255 (350)
T ss_pred eecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCce
Confidence 9999999999884 2245 99999999999999999999998885 2 36799999999 99999999999999
Q ss_pred EEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeee
Q 009614 454 RIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (531)
Q Consensus 454 ~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~ 512 (531)
.+||++.++.++ +..|...|.++.|+|...|+++++.|..|++=|++ |.+..+..+-+
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~v 314 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMV 314 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEE
Confidence 999999999884 88999999999999999999999999999999998 44555554433
No 45
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.93 E-value=2.5e-24 Score=211.23 Aligned_cols=248 Identities=19% Similarity=0.328 Sum_probs=202.2
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC----C
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----G 306 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g 306 (531)
++.|...+.-..++|.|.++|+|...|+|+||+.......++ .+++.-.++|..|+|+.+++.|+..++. |
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-----nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-----NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-----eeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 444544555578999999999999999999999886544333 4567778999999999999999887753 3
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
.+.+|| +|..+.++..+...+..+.+.+.. ....++++.|..+.+|.-..|+. ..++..
T Consensus 130 ~~F~~D--SG~SvGei~GhSr~ins~~~KpsR---------------PfRi~T~sdDn~v~ffeGPPFKF----k~s~r~ 188 (603)
T KOG0318|consen 130 HVFLWD--SGNSVGEITGHSRRINSVDFKPSR---------------PFRIATGSDDNTVAFFEGPPFKF----KSSFRE 188 (603)
T ss_pred EEEEec--CCCccceeeccceeEeeeeccCCC---------------ceEEEeccCCCeEEEeeCCCeee----eecccc
Confidence 455555 677777777777666665555443 34456778888888887666543 456778
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~ 461 (531)
|...|.|+.|+|+| ++++.+.||+|.+||=.+++.+..+. |.+.|.+|+|+| |+..|++++.|.+++|||+.+.
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeecc
Confidence 99999999999999 99999999999999999999999985 999999999999 9999999999999999999765
Q ss_pred eEE--------------------------------------------EecCCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614 462 QVV--------------------------------------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (531)
Q Consensus 462 ~~~--------------------------------------------~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 497 (531)
+++ ...+|...|+++..+||+++|++|+.||.|.-|
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 421 135688899999999999999999999999999
Q ss_pred eCCCCeEE
Q 009614 498 DIKDNQLY 505 (531)
Q Consensus 498 d~~~~~l~ 505 (531)
+..++..-
T Consensus 348 ~~~~g~~~ 355 (603)
T KOG0318|consen 348 DSGSGTSD 355 (603)
T ss_pred ecCCcccc
Confidence 99887643
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-24 Score=196.62 Aligned_cols=253 Identities=18% Similarity=0.252 Sum_probs=197.8
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
.+.+|..++..+.++.+|.+|.++++|..+.||-..+++ ..-++.||+++|+|+..+-+.++|+||+.|.+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-------eeeeecCCCceEEEEEecCCcceeeeccccceeE
Confidence 356677778889999999999999999999999765433 3347899999999999999999999999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccc---cccCcceeEeec
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF---RLLEKPLHEFQG 386 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 386 (531)
+||+.+|+++..++.... +..+.|.......++..+ . .-+....+.+++.+.- ...+.|+..+..
T Consensus 78 LWDv~tGk~la~~k~~~~-Vk~~~F~~~gn~~l~~tD--~---------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSP-VKRVDFSFGGNLILASTD--K---------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred EEEcCCCcEEEEeecCCe-eEEEeeccCCcEEEEEeh--h---------hcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 999999998887765432 334444443332222221 1 1122333444444321 123567888888
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~ 463 (531)
+...++.+-|.|-+ .|++|..||.|.+||+++++.+..-. |...|+.|+++| +..+|++++.|.+-++||+.+.++
T Consensus 146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceee
Confidence 99999999999998 99999999999999999986655442 999999999999 999999999999999999876432
Q ss_pred E--------------------------------------------------------EecCCCCceEEEEEccCCCEEEE
Q 009614 464 V--------------------------------------------------------DYTDIREIVSAVCYCPDGKGGIV 487 (531)
Q Consensus 464 ~--------------------------------------------------------~~~~~~~~v~~v~~spdg~~l~s 487 (531)
+ ...+|-++|++|+|+|+|+..++
T Consensus 225 ~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 225 LKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS 304 (327)
T ss_pred EEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc
Confidence 1 12457788999999999999999
Q ss_pred EeCCCcEEEEeCCCC
Q 009614 488 GTMTGNCRFYDIKDN 502 (531)
Q Consensus 488 gs~dg~I~iwd~~~~ 502 (531)
|+.||.|++......
T Consensus 305 GGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 305 GGEDGYVRLHHFDSN 319 (327)
T ss_pred CCCCceEEEEEeccc
Confidence 999999999876543
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=1.8e-24 Score=204.74 Aligned_cols=248 Identities=19% Similarity=0.295 Sum_probs=195.8
Q ss_pred eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC---CEEEEEeCCCcEEE
Q 009614 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRV 310 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~i 310 (531)
|.+-|.++... +.++++|+.||.++||+..... ...+.||.++|.+++|.... ..|++++.|.++++
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCce--------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 34555555554 7799999999999999987433 34578999999998885433 36999999999999
Q ss_pred EEcccCccccc----eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcc-------------
Q 009614 311 WKVIEHERLDG----FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV------------- 373 (531)
Q Consensus 311 Wd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 373 (531)
|.+..+..... ...|...+.++...... ...++++.|..+.+|+...
T Consensus 174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg----------------tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSG----------------TRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred EEecCchhhhhHHhHhcccccceeEEEecCCC----------------CeEEeecccceeeecccCCCccccccccchhh
Confidence 99987764322 23444444444332222 2335667777777777110
Q ss_pred --------ccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614 374 --------FRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (531)
Q Consensus 374 --------~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~ 445 (531)
......|+..+.||..+|.++.|++.+.+++++.|.+|+.||+.++.++..+..+..++||.++| ..++|+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~ 316 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLA 316 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccc-ccceee
Confidence 01124688899999999999999997799999999999999999999999999999999999999 999999
Q ss_pred EEeCCCeEEEEeCCCC--eEE--EecCCCCceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe-EEEEe
Q 009614 446 SGSIDGKVRIWEVRRC--QVV--DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQ-LYQQN 508 (531)
Q Consensus 446 sgs~Dg~I~Iwd~~~~--~~~--~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~-l~~~~ 508 (531)
+|+.|..|++||.+++ .++ .+.+|...|.++.|+|.. ..|++|+.||++++||+++.+ .+..+
T Consensus 317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 9999999999999985 344 589999999999999965 568899999999999999877 55544
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=7.5e-24 Score=205.75 Aligned_cols=237 Identities=27% Similarity=0.466 Sum_probs=195.6
Q ss_pred eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
+...+..+.|+|+++++++++.+|.|++|++.... ....+..|...|.++.|+++++++++++.||.|++||+
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 33445578999999999999999999999998542 23356789999999999999999999988999999999
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 393 (531)
.+++....+..+...+.++.+.+.. .+ .+.+..++.+.+|+... .+++..+..|...|.+
T Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~--~~--------------l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~i~~ 182 (289)
T cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPDG--TF--------------VASSSQDGTIKLWDLRT----GKCVATLTGHTGEVNS 182 (289)
T ss_pred CCcEEEEEeccCCCcEEEEEEcCcC--CE--------------EEEEcCCCcEEEEEccc----cccceeEecCccccce
Confidence 9887777766555555565555441 11 12233466788887764 3446677789999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCC
Q 009614 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR 470 (531)
Q Consensus 394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~ 470 (531)
+.|+|++ .+++++.|+.|++||++.++.+..+ .|...+.+++|+| ++.++++++.||.|++||+.+++.. .+..|.
T Consensus 183 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 9999999 8999999999999999999999888 6888999999999 7888888888999999999987766 466788
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 471 ~~v~~v~~spdg~~l~sgs~dg~I~iwd 498 (531)
..|.+++|+|++++|++++.||.|++|+
T Consensus 262 ~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8999999999999999999999999996
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=7.6e-24 Score=237.28 Aligned_cols=237 Identities=22% Similarity=0.347 Sum_probs=187.6
Q ss_pred ccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 009614 236 DRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 236 ~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~ 313 (531)
..+.+++|+| ++.+||+++.||.|+|||+.... ....+.+|.+.|++++|+| ++.+|++|+.||+|++||+
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence 3455688887 47899999999999999987533 2345789999999999997 7899999999999999999
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 393 (531)
.++..+..+..+ ..+.++.+..... ...+.++.++.+.+|+.+... .++..+.+|...|.+
T Consensus 606 ~~~~~~~~~~~~-~~v~~v~~~~~~g---------------~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~ 666 (793)
T PLN00181 606 NQGVSIGTIKTK-ANICCVQFPSESG---------------RSLAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSY 666 (793)
T ss_pred CCCcEEEEEecC-CCeEEEEEeCCCC---------------CEEEEEeCCCeEEEEECCCCC---ccceEecCCCCCEEE
Confidence 988776666532 2333444322211 223567788899999886532 246677899999999
Q ss_pred EEEcCCCeEEEEeCCCcEEEEECCCC------eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 009614 394 LSWSKNGFLLSSSADKTVRLWQVGID------RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD- 465 (531)
Q Consensus 394 l~~sp~~~l~s~s~Dg~V~lwdl~~~------~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~- 465 (531)
+.|.+..+|++++.|++|++||+..+ .++..+. |...+++++|+| ++.+|++|+.|+.|+||+......+.
T Consensus 667 v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 667 VRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLS 745 (793)
T ss_pred EEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEE
Confidence 99985459999999999999999743 4566664 889999999999 89999999999999999987653321
Q ss_pred -------------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614 466 -------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 466 -------------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 499 (531)
...+...|.+++|+|++.+|++|+.||.|+||++
T Consensus 746 ~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1234567999999999999999999999999986
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=3.4e-25 Score=207.94 Aligned_cols=209 Identities=21% Similarity=0.351 Sum_probs=185.6
Q ss_pred ceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccc
Q 009614 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (531)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (531)
.+.+++|.+.|.|+++.|.+.+|+||+.|++|+|||+.+++...++..+...+..+.++..+. +
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp----------------Y 207 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP----------------Y 207 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc----------------e
Confidence 346889999999999999999999999999999999999999888887777777766665543 4
Q ss_pred ccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEE
Q 009614 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSV 434 (531)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv 434 (531)
.++.+.+..+..|+... .+.+..+.||-..|.|++.+|.- .|++|+.|.++|+||+++...+.++. |..+|.++
T Consensus 208 lFs~gedk~VKCwDLe~----nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEY----NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV 283 (460)
T ss_pred EEEecCCCeeEEEechh----hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence 46677888899998876 34578899999999999999987 99999999999999999999999996 99999999
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~ 507 (531)
.+.| ....+++|+.|++|++||++.++.. .+..|...|.+++.+|.-..+++++.|. |+-|++..|..++.
T Consensus 284 ~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 284 MCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN 355 (460)
T ss_pred Eeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc
Confidence 9999 5667999999999999999998766 6888999999999999999999999775 99999999988876
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=201.11 Aligned_cols=221 Identities=16% Similarity=0.314 Sum_probs=183.8
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCC------cc-----cccccccceEEcccCCCEEEEEEccCCCE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQ------SR-----ELSSLYTGQEFLAHEGSILTMKFSLDGQY 298 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~------~~-----~~~~~~~~~~l~~H~~~I~~l~fspdg~~ 298 (531)
-++.|+....+.+|+|||.++|+|+.|-.|+|.|+... .. ........+++..|...|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 35667777888999999999999999999999999721 11 11122345678899999999999999999
Q ss_pred EEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (531)
Q Consensus 299 Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (531)
|++|+.|++|+++|+......+.++
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K------------------------------------------------------- 211 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFK------------------------------------------------------- 211 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHH-------------------------------------------------------
Confidence 9999999999999986543222111
Q ss_pred cceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee----cCCceEEEEEeeCCCCEEEEEeCCCeE
Q 009614 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKV 453 (531)
Q Consensus 379 ~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I 453 (531)
. .....+|.+|.|+|.| +|+.|....++++||+.+.+|...-. |.+.|+++.+++ .+++.++|+.||.|
T Consensus 212 ----~-~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~I 285 (430)
T KOG0640|consen 212 ----V-FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAI 285 (430)
T ss_pred ----H-hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcE
Confidence 1 1134579999999999 99999999999999999999876653 899999999999 99999999999999
Q ss_pred EEEeCCCCeEEEe--cCC-CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 454 RIWEVRRCQVVDY--TDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 454 ~Iwd~~~~~~~~~--~~~-~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
+|||--+++++.. ..| ...|.+..|..+|+||++.+.|..+++|.+.+++.+..+...
T Consensus 286 klwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 286 KLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred EeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 9999999888853 223 457999999999999999999999999999999999887644
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=203.10 Aligned_cols=262 Identities=13% Similarity=0.186 Sum_probs=195.1
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
.+++|++.|.++.|+.+|.+||+|.-+|.|+||+..++..... +..--..|.-|.|+|.+..|+.|+.||.|-
T Consensus 101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~-------~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK-------LDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE-------eecccCceEEEEecccccEEEeecCCCcEE
Confidence 5788999999999999999999999999999999987665433 333456788999999999999999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCccee--------eeecccccc-------------------ccccccccCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI--------PIDVDKEKI-------------------DKTKSLRKSS 362 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-------------------~~~~~~~~~~ 362 (531)
+|.+.+....+.+..+.....+-.+.+.....+. .+....... .....+.++.
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 9999998777778877777766666655322211 111111000 0001122222
Q ss_pred CceEEEeCCcccccc---C-cceeEeecCCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEE
Q 009614 363 DLTCVVLPPKVFRLL---E-KPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434 (531)
Q Consensus 363 ~~~~~~~~~~~~~~~---~-~~~~~~~~h~~~I~~l~~sp~~----~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv 434 (531)
++..++......+.. . ........+...+.++.+.|.. +.++|+.||+|.|||+...+..+.+.|...|+.+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL 333 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence 222222222111110 0 0111112345556667666644 7889999999999999999998899999999999
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
.|-+ ..+|++++.+|+|++||.++++++ .+.+|...|.+++++|+++++++++.|++.+||++.
T Consensus 334 ~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9987 578999999999999999999987 699999999999999999999999999999999874
No 53
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2e-23 Score=219.17 Aligned_cols=231 Identities=15% Similarity=0.276 Sum_probs=170.6
Q ss_pred ccceeeeccccceeeeCC-CCeEEeeecCCeEEEEeCCCCcccccc-cccceEEcccCCCEEEEEEccCCCE-EEEEeCC
Q 009614 229 GAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSLDGQY-LASGGED 305 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fspdg~~-Lasgs~D 305 (531)
..+.+|...|.+++|+|+ +.+||+|+.|+.|+||++......... ......+.+|...|.+++|+|++.. |++|+.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 346678888999999997 789999999999999999754321111 1123357899999999999998875 5799999
Q ss_pred CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
++|+|||+.+++.. ..+.
T Consensus 148 gtIrIWDl~tg~~~--------------------------------------------------------------~~i~ 165 (568)
T PTZ00420 148 SFVNIWDIENEKRA--------------------------------------------------------------FQIN 165 (568)
T ss_pred CeEEEEECCCCcEE--------------------------------------------------------------EEEe
Confidence 99999999776421 1122
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEE-----EEEeeCCCCEEEEEeCCC----eEE
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS-----VAFNPVDDNYFISGSIDG----KVR 454 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~s-----v~fsp~d~~~l~sgs~Dg----~I~ 454 (531)
|...|.+++|+|+| +|++++.|+.|+|||+++++.+..+. |.+.+.+ ..|++ ++.+|++++.|+ .|+
T Consensus 166 -~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 166 -MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMK 243 (568)
T ss_pred -cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEE
Confidence 44679999999999 88999999999999999999988875 7765433 33457 788999988774 799
Q ss_pred EEeCCC-CeEEEecC---CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 455 IWEVRR-CQVVDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 455 Iwd~~~-~~~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
|||+++ .+++.... +...+......++|.++++|+.|++|++|++..+.+.. .. .......+.+++|.|
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~-l~------~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRK-VN------EYKSCSPFRSFGFLP 316 (568)
T ss_pred EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEe-ec------ccccCCCccceEEcc
Confidence 999995 45554323 23333444445568999999999999999998775322 11 111335566777776
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.8e-24 Score=215.79 Aligned_cols=234 Identities=21% Similarity=0.311 Sum_probs=201.1
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 315 (531)
.++.+..|-+-.+++++|+.|..|+|+++++.. ....+.+|.+-|++++.+|...+++|+++|-+|++||...
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEecccce-------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 455667788888999999999999999999544 4467999999999999999999999999999999999976
Q ss_pred C-ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614 316 H-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (531)
Q Consensus 316 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 394 (531)
+ .+.+.+..|..-+.++.+.|...+.. .+++-|.++.+|.... ..|..++.+|...|+|+
T Consensus 129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntF---------------aS~sLDrTVKVWslgs----~~~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 129 EWACEQTFEGHEHYVMQVAFNPKDPNTF---------------ASASLDRTVKVWSLGS----PHPNFTLEGHEKGVNCV 189 (794)
T ss_pred ceeeeeEEcCcceEEEEEEecCCCccce---------------eeeeccccEEEEEcCC----CCCceeeeccccCcceE
Confidence 4 56677888887777777777665544 4556677888887765 35678999999999999
Q ss_pred EEcCCC---eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCC
Q 009614 395 SWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI 469 (531)
Q Consensus 395 ~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~ 469 (531)
.+-+.| +|++|+.|.+|+|||.++..|++++. |...|..+.|+| .-.+|++|+.||+||||+..+-++.+ +.-.
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g 268 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYG 268 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcC
Confidence 999977 99999999999999999999999997 999999999999 88999999999999999999987764 4455
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEE
Q 009614 470 REIVSAVCYCPDGKGGIVGTMTGNCRF 496 (531)
Q Consensus 470 ~~~v~~v~~spdg~~l~sgs~dg~I~i 496 (531)
-+.+++|+-.+.+..+++|...|.|.+
T Consensus 269 leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 269 LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 678999999998888999988876643
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=4.5e-24 Score=192.92 Aligned_cols=259 Identities=17% Similarity=0.230 Sum_probs=198.9
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVR 309 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~ 309 (531)
...|..++.+++|+.+|..+++|+.|++++||++..... .......+|.+.|-.++|+| +..+|++++.|.+|+
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 445667778899999999999999999999999986532 22235789999999999998 567899999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCC--------cceeeeeccccccccc-----------------cccccCCCc
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHL--------SQLIPIDVDKEKIDKT-----------------KSLRKSSDL 364 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 364 (531)
+||++.+++...+......+ .+.|.+... ..+..++....+.... ..+..++.+
T Consensus 91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence 99999999887776544433 333333322 2222222221111100 011122222
Q ss_pred eEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCC
Q 009614 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN 442 (531)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~ 442 (531)
.+-+.... .-+|+..++.|+....||.|+|+| +|++|+.|..+.+||+..--|++.+. +.-+|..|.|+. +++
T Consensus 170 ~v~ILsyp----sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~ 244 (313)
T KOG1407|consen 170 CVEILSYP----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGR 244 (313)
T ss_pred eEEEEecc----ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccc
Confidence 22222111 247889999999999999999999 99999999999999999999999996 899999999999 999
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC---------CcEEEEeCC
Q 009614 443 YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIK 500 (531)
Q Consensus 443 ~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---------g~I~iwd~~ 500 (531)
+||+||.|..|-|=++.+|..+.-..+.++-..|+|+|...+||.++.| |.++||-+.
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 9999999999999999999999888899999999999999999988775 456666543
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.2e-24 Score=219.72 Aligned_cols=256 Identities=18% Similarity=0.284 Sum_probs=205.8
Q ss_pred hcccccccccc----ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC
Q 009614 220 VKRGWLKKLGA----MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295 (531)
Q Consensus 220 ~~~~w~~~~~~----~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd 295 (531)
....|.-+.++ +..|.++|..+.|+|++.++++|+.|-.|+||+++..... -++.||-+-|..+.|++.
T Consensus 32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-------ftL~GHlDYVRt~~FHhe 104 (1202)
T KOG0292|consen 32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-------FTLLGHLDYVRTVFFHHE 104 (1202)
T ss_pred eeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh-------hhhccccceeEEeeccCC
Confidence 34556655554 5678889999999999999999999999999999965543 358899999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc
Q 009614 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (531)
Q Consensus 296 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (531)
-.+++|+++|.+|+||++++.+++..+..|...+.|..|.+.... .++++-|.++.+|+....+
T Consensus 105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl----------------IVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL----------------IVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce----------------EEEecccceEEEEeecchh
Confidence 999999999999999999999999999888888888877765432 2344556666666653322
Q ss_pred ccC-------------------------cceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Ee-e
Q 009614 376 LLE-------------------------KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VF-S 426 (531)
Q Consensus 376 ~~~-------------------------~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~--~~-~ 426 (531)
... -..+.+.||...|+-++|+|.- ++++|+.|..|++|.+...+.-. +. +
T Consensus 169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg 248 (1202)
T KOG0292|consen 169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG 248 (1202)
T ss_pred ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc
Confidence 110 1235678999999999999988 99999999999999987544322 22 4
Q ss_pred cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
|.+.|.++-|+| ..+++++.+.|+.|+|||+...+.+. +...++..+.++-+|..++++.|.. +-+.+|.++
T Consensus 249 H~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHD-sGm~VFkle 321 (1202)
T KOG0292|consen 249 HYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHD-SGMIVFKLE 321 (1202)
T ss_pred ccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecC-CceEEEEEc
Confidence 999999999999 89999999999999999999988875 5556778899999999997777664 445566655
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-24 Score=224.44 Aligned_cols=216 Identities=22% Similarity=0.331 Sum_probs=177.0
Q ss_pred ce-eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcc------c------------------cc-------------
Q 009614 231 MA-RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR------E------------------LS------------- 272 (531)
Q Consensus 231 ~~-~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~------~------------------~~------------- 272 (531)
+. .|.+.|-++.|++||+|||+|+.|+.|+||.+...+. . ..
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 6778888899999999999999999999998876000 0 00
Q ss_pred ----------------ccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEee
Q 009614 273 ----------------SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI 336 (531)
Q Consensus 273 ----------------~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 336 (531)
.-.+..++.||.+.|.+|.||.++ +|++++.|++||+|++....++..|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-------------- 406 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-------------- 406 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE--------------
Confidence 001123588999999999999765 8999999999999999776654332
Q ss_pred cCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEE
Q 009614 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLW 414 (531)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lw 414 (531)
.|...|+|++|+|.. ++++|+-|+.||||
T Consensus 407 -------------------------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiW 437 (712)
T KOG0283|consen 407 -------------------------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLW 437 (712)
T ss_pred -------------------------------------------------ecCCeeEEEEecccCCCcEeecccccceEEe
Confidence 389999999999965 99999999999999
Q ss_pred ECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE---ecCC------CCceEEEEEccCC-CE
Q 009614 415 QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDI------REIVSAVCYCPDG-KG 484 (531)
Q Consensus 415 dl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~---~~~~------~~~v~~v~~spdg-~~ 484 (531)
++...+.+.-.....-|++++|.| +|++.+.|+.+|.+++|++...+++. ...+ ...|+.+.|.|.. ..
T Consensus 438 sI~d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~ 516 (712)
T KOG0283|consen 438 SISDKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE 516 (712)
T ss_pred ecCcCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence 999888877777779999999999 89999999999999999999887662 1111 2379999999844 45
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 485 GIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 485 l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
+++.+.|..|||||+++..++.+++..
T Consensus 517 vLVTSnDSrIRI~d~~~~~lv~KfKG~ 543 (712)
T KOG0283|consen 517 VLVTSNDSRIRIYDGRDKDLVHKFKGF 543 (712)
T ss_pred EEEecCCCceEEEeccchhhhhhhccc
Confidence 888889999999999988888877643
No 58
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=3e-23 Score=216.78 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=161.0
Q ss_pred ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccc------cccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEE
Q 009614 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS------LYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRV 310 (531)
Q Consensus 238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~------~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~i 310 (531)
+.....++++..+++++.+.....|+...+...+.. ......+.+|.+.|++++|+| ++++|++|+.|++|+|
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 333455566666666666666666654432211100 001124789999999999999 8899999999999999
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
||+.++..... ...++..+.+|...
T Consensus 103 Wdi~~~~~~~~-------------------------------------------------------~~~~l~~L~gH~~~ 127 (493)
T PTZ00421 103 WGIPEEGLTQN-------------------------------------------------------ISDPIVHLQGHTKK 127 (493)
T ss_pred EecCCCccccc-------------------------------------------------------cCcceEEecCCCCc
Confidence 99865431100 01235667899999
Q ss_pred eeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 009614 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (531)
Q Consensus 391 I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~ 466 (531)
|.+++|+|.+ +|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|++|+|||+++++.+ .+
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 9999999975 89999999999999999999888886 899999999999 9999999999999999999998876 45
Q ss_pred cCCCCc-eEEEEEccCCCEEEEEe----CCCcEEEEeCCCCe
Q 009614 467 TDIREI-VSAVCYCPDGKGGIVGT----MTGNCRFYDIKDNQ 503 (531)
Q Consensus 467 ~~~~~~-v~~v~~spdg~~l~sgs----~dg~I~iwd~~~~~ 503 (531)
..|... +..+.|.+++..|++++ .|+.|++||+++..
T Consensus 207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 207 EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 666654 45788999888887754 47899999998643
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.9e-24 Score=194.01 Aligned_cols=202 Identities=20% Similarity=0.348 Sum_probs=179.7
Q ss_pred eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
|+.-|.+++|+.|.++|++|+.+..++|++++...... .++.+|++.|..+-|....+.+++++.|++||+||.
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP------KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc------hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 44556679999999999999999999999998765543 368899999999999998889999999999999999
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 393 (531)
.++..++.+. .+.+|++
T Consensus 173 rTgt~v~sL~---------------------------------------------------------------~~s~VtS 189 (334)
T KOG0278|consen 173 RTGTEVQSLE---------------------------------------------------------------FNSPVTS 189 (334)
T ss_pred ccCcEEEEEe---------------------------------------------------------------cCCCCcc
Confidence 9988655442 2456889
Q ss_pred EEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCC
Q 009614 394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIRE 471 (531)
Q Consensus 394 l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~ 471 (531)
+.++++|.+++....+.|++||..+-..++.+..+..|.+..++| +..+|++|+.|..++.||..++.-+. ..+|.+
T Consensus 190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g 268 (334)
T KOG0278|consen 190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG 268 (334)
T ss_pred eeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence 999999988888888999999999999999999999999999999 78999999999999999999998764 389999
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 472 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~ 505 (531)
+|.++.|+|||...++|+.||+|+||.+..++..
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999999999877654
No 60
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.3e-22 Score=212.98 Aligned_cols=193 Identities=18% Similarity=0.316 Sum_probs=155.9
Q ss_pred eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCccc-cceecCCCCCe
Q 009614 253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERL-DGFDVQDTDPS 330 (531)
Q Consensus 253 gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~-~~~~~~~~~~~ 330 (531)
|+.++.|++|+..... ....+.+|.++|++++|+|+ +.+||||+.||+|+|||+.++... ..+
T Consensus 50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i-------- 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI-------- 114 (568)
T ss_pred CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------
Confidence 6678899999876432 23468899999999999996 789999999999999999754310 000
Q ss_pred eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCC
Q 009614 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD 408 (531)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~D 408 (531)
..++..+.+|...|.+++|+|++ .|++++.|
T Consensus 115 -----------------------------------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 115 -----------------------------------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred -----------------------------------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 01345567899999999999988 56799999
Q ss_pred CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEE-----EEEccCC
Q 009614 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA-----VCYCPDG 482 (531)
Q Consensus 409 g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~-----v~~spdg 482 (531)
++|+|||+++++.+..+.|...|.+++|+| ++.+|++++.|+.|+|||+++++.+ .+.+|.+.+.. ..|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999999999999888888888999999999 9999999999999999999999876 46777765433 3456899
Q ss_pred CEEEEEeCCC----cEEEEeCCC-CeEEEEe
Q 009614 483 KGGIVGTMTG----NCRFYDIKD-NQLYQQN 508 (531)
Q Consensus 483 ~~l~sgs~dg----~I~iwd~~~-~~l~~~~ 508 (531)
.+|++++.++ .|+|||++. ++.+...
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 9999988774 799999985 5555443
No 61
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.8e-23 Score=201.16 Aligned_cols=272 Identities=21% Similarity=0.294 Sum_probs=214.9
Q ss_pred cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccc----------ccccceEE-cccCCCEEEEEEccCC
Q 009614 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------SLYTGQEF-LAHEGSILTMKFSLDG 296 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~----------~~~~~~~l-~~H~~~I~~l~fspdg 296 (531)
+..+..|...+.+++++|++.+..+++.+++|.=|++..+...-. .....+.- ++|...|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 445666777888999999999999999999999999987664310 11111112 3899999999999999
Q ss_pred CEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (531)
Q Consensus 297 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (531)
+|||+|+.|..|.||+..+.+.++.+..+...+.++.|...... .+.++.|..+.+|......+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~----------------lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE----------------LYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccc----------------eeeeecCCceEEEehhHhHH
Confidence 99999999999999999999999998888888888877655432 34567778888888776544
Q ss_pred cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (531)
Q Consensus 377 ~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I 455 (531)
+.++.+|+..|..|....-+ .+-.|+.|.++++|++.....+.-..+.+.+-|++|- +...|++|+.+|.|.+
T Consensus 279 ----vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 279 ----VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIAL 352 (479)
T ss_pred ----HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEE
Confidence 66789999999999988777 4455569999999999666655555688899999997 5788999999999999
Q ss_pred EeCCCCeEEEe--cCC-----------CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe----EEEEeeeeecccccC
Q 009614 456 WEVRRCQVVDY--TDI-----------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ----LYQQNQICLQGKKKL 518 (531)
Q Consensus 456 wd~~~~~~~~~--~~~-----------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~----l~~~~~~~~~~~kk~ 518 (531)
|++.+.+++.. ..| +.+|++++..|...++++|+.+|.|++|-+.+|- ++..+. +
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~------ 424 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--L------ 424 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--c------
Confidence 99998877621 111 2279999999999999999999999999999883 233222 1
Q ss_pred CCceeeeEEEee
Q 009614 519 PGKRITGFQVVK 530 (531)
Q Consensus 519 ~~~~It~l~f~p 530 (531)
..-|++|+|++
T Consensus 425 -~GfVNsl~f~~ 435 (479)
T KOG0299|consen 425 -VGFVNSLAFSN 435 (479)
T ss_pred -ccEEEEEEEcc
Confidence 24677777764
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.5e-24 Score=191.63 Aligned_cols=237 Identities=18% Similarity=0.237 Sum_probs=193.3
Q ss_pred ccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccc
Q 009614 238 HGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 238 ~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~ 315 (531)
.-.++|+++. ..+++++.||.+++||...... +.+.++.|...|.++.|++ +++.+++++-|++|++|+...
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 3347888865 4667889999999999664333 3456889999999999999 566788889999999999999
Q ss_pred CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 395 (531)
.+.+.++..+...+....|.+...+.+ ...+.++.+.+|+.+.. ++++. +..|...|+++.
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf---------------as~Sgd~~l~lwdvr~~---gk~~~-i~ah~~Eil~cd 197 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLF---------------ASASGDGTLRLWDVRSP---GKFMS-IEAHNSEILCCD 197 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeE---------------EEccCCceEEEEEecCC---CceeE-EEeccceeEeec
Confidence 988888887777666666666554433 45678889999995543 55555 888999999999
Q ss_pred EcCCC--eEEEEeCCCcEEEEECCCC-eEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCC
Q 009614 396 WSKNG--FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDI 469 (531)
Q Consensus 396 ~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~~~ 469 (531)
|+.-. .|+||+.|+.|++||++.- .++..+ .|.-.|..|.|+|....+|++++.|-++||||...+.-. ....|
T Consensus 198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H 277 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH 277 (311)
T ss_pred ccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc
Confidence 99866 9999999999999999864 344444 499999999999988889999999999999999865433 46678
Q ss_pred CCceEEEEEcc-CCCEEEEEeCCCcEEEEeC
Q 009614 470 REIVSAVCYCP-DGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 470 ~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~ 499 (531)
.+-+..+.|++ ++.++|+.+.|+.++||+.
T Consensus 278 tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 278 TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ceEEeccccccccCceeeecccccceeeecc
Confidence 88899999998 6678999999999999984
No 63
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1.7e-23 Score=212.94 Aligned_cols=242 Identities=23% Similarity=0.408 Sum_probs=191.6
Q ss_pred ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (531)
Q Consensus 238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 317 (531)
+.+..|-|.+.++++|.+.|.+.|+|+.. .....++++|.++|+.|+.+||+..+++||.|.+|++|+..-..
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-------~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~ 487 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLAS-------ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVV 487 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeeh-------hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEe
Confidence 34568999999999999999999999873 33445678999999999999999999999999999999974211
Q ss_pred -----cccceec-------CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 318 -----RLDGFDV-------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 318 -----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
..+.+.. ....+.|+.++|+.. +.++. --+.++.+|-...+ +....+.
T Consensus 488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk--~LaVs--------------LLdnTVkVyflDtl----KFflsLY 547 (888)
T KOG0306|consen 488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK--LLAVS--------------LLDNTVKVYFLDTL----KFFLSLY 547 (888)
T ss_pred ccCcccceeeeeccceEEeccccEEEEEEcCCCc--EEEEE--------------eccCeEEEEEecce----eeeeeec
Confidence 1111111 122344444444432 22221 11333444433332 3366789
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~ 463 (531)
||.-+|.||..+|++ +++||+.|+.|++|-+.-|.|-+.+ .|.+.|+++.|-| ....|.+++.|+.|+-||-.....
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~ 626 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEE 626 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhh
Confidence 999999999999999 9999999999999999999998876 5999999999999 889999999999999999998776
Q ss_pred E-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 464 ~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~ 507 (531)
+ .+.+|...|++++.+|+|.++++++.|.+|++|......++.+
T Consensus 627 iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 627 IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE 671 (888)
T ss_pred heeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence 6 6899999999999999999999999999999999876555443
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=4.4e-23 Score=215.88 Aligned_cols=251 Identities=20% Similarity=0.327 Sum_probs=206.0
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 315 (531)
..+.+..|+ +.++++++.+++|++|+..+..... ..+.||.+.|+++++..-+.+|++|+.|.++++||..+
T Consensus 209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~------~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL------TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred chhhhheee--cCeEEecCCCceeEEeecccceEEE------eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 344455666 6789999999999999988544332 23889999999999988788999999999999999999
Q ss_pred CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 395 (531)
+++...+..+...+.++.... ...+.++.|.++.+|+... .+.++.+.+|.++|.++.
T Consensus 281 g~C~~~l~gh~stv~~~~~~~------------------~~~~sgs~D~tVkVW~v~n----~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP------------------FLLVSGSRDNTVKVWDVTN----GACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred CcEEEEecCCCceEEEEEccC------------------ceEeeccCCceEEEEeccC----cceEEEeccccccEEEEE
Confidence 999998887777666654322 2334578899999999874 456788888999999999
Q ss_pred EcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-eEEE-ecCCCCc
Q 009614 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVD-YTDIREI 472 (531)
Q Consensus 396 ~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-~~~~-~~~~~~~ 472 (531)
.+ ..++++|+.|++|++||+.++++++.+. |...|+++.+.+ . .++++|+.|++|++||+.+. +++. +.+|...
T Consensus 339 ~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~ 415 (537)
T KOG0274|consen 339 LD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL 415 (537)
T ss_pred ec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence 98 4499999999999999999999999996 999999998865 3 99999999999999999999 7764 7777777
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEE
Q 009614 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQV 528 (531)
Q Consensus 473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f 528 (531)
+..+.+ .++.|++++.||+|++||..++++++..+.. +...|+.+++
T Consensus 416 v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-------~~~~v~~l~~ 462 (537)
T KOG0274|consen 416 VSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-------HVGGVSALAL 462 (537)
T ss_pred cccccc--ccceeEeccccccEEEeecccCceeeeeccC-------CcccEEEeec
Confidence 755544 6789999999999999999999998876643 2345555554
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=5.9e-24 Score=208.02 Aligned_cols=248 Identities=16% Similarity=0.196 Sum_probs=184.1
Q ss_pred ccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (531)
Q Consensus 225 ~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (531)
..+-..+.++...|.++++.|.|-.+++|+.|-.|++||+......+..+...+- .....|+++.|++.|..|++.+.
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEec
Confidence 3344456667777888999999999999999999999999987766555443332 33457999999999999999998
Q ss_pred CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (531)
Q Consensus 305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
...++|+|-...+........ .++ .-+..-
T Consensus 235 ~aqakl~DRdG~~~~e~~KGD----------------------------------------QYI----------~Dm~nT 264 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGD----------------------------------------QYI----------RDMYNT 264 (641)
T ss_pred CcceeEEccCCceeeeeeccc----------------------------------------hhh----------hhhhcc
Confidence 899999996443322111110 000 113445
Q ss_pred ecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEee------cCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614 385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~~------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I 455 (531)
+||...++|.+|+|.. .+++++.||++||||+... ..+.++. ..-++++++|+| ++++||+|+.||.|.+
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQI 343 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceee
Confidence 7899999999999987 9999999999999999753 4455554 335789999999 9999999999999999
Q ss_pred EeCCCCeEE----EecCCCC--ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614 456 WEVRRCQVV----DYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV 529 (531)
Q Consensus 456 wd~~~~~~~----~~~~~~~--~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~ 529 (531)
|+.....+. .-..|.. .|++|.|++||++|++-+.|+++++||++.-+.-......+... .+-|...|+
T Consensus 344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-----~~~tdc~FS 418 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-----FPGTDCCFS 418 (641)
T ss_pred eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-----CCCCccccC
Confidence 998654322 2344554 89999999999999999999999999998654332222222222 344666666
Q ss_pred e
Q 009614 530 K 530 (531)
Q Consensus 530 p 530 (531)
|
T Consensus 419 P 419 (641)
T KOG0772|consen 419 P 419 (641)
T ss_pred C
Confidence 5
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=1.3e-23 Score=200.92 Aligned_cols=268 Identities=17% Similarity=0.220 Sum_probs=214.9
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
.+.+|...++.+.|-++...|++|+.|..|++|++.....+ ...++.|..++|+.+.|.+++.++++++.|+.++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-----~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-----LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-----hhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 46677788888999999999999999999999999865533 2346778889999999999999999999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
+|++...+...++..|...+.++.+...+.. .+.++.+..+..|+.....-...++ ...
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~----------------vVsgs~DRtiK~WDl~k~~C~kt~l-----~~S 303 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR----------------VVSGSADRTIKLWDLQKAYCSKTVL-----PGS 303 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccc----------------eeeccccchhhhhhhhhhheecccc-----ccc
Confidence 9999999999999988887777666544322 3566777777777765532221111 233
Q ss_pred CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe-c-
Q 009614 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-T- 467 (531)
Q Consensus 390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~-~- 467 (531)
.+.+|...+ ..+++|..|++||+||+++..+.......+.|+++..++ ++..+.+++.|.++.+.|+++..+... .
T Consensus 304 ~cnDI~~~~-~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 304 QCNDIVCSI-SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred cccceEecc-eeeeecccccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeec
Confidence 455665552 288999999999999999999999998788999999999 999999999999999999999877632 1
Q ss_pred ---CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEeeC
Q 009614 468 ---DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI 531 (531)
Q Consensus 468 ---~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p~ 531 (531)
......+.++|+|++.|+++|+.||.|+||++.++++....+.. + ....|+++.|+|+
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s--~----s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS--T----SNAAITSLSWNPS 442 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC--C----CCcceEEEEEcCC
Confidence 12234889999999999999999999999999999987654422 1 1127999999985
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.6e-23 Score=185.32 Aligned_cols=209 Identities=20% Similarity=0.402 Sum_probs=180.4
Q ss_pred eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (531)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (531)
..+.+|+++|.++.|+-||+|.++|+.|.+|++|+...+.+++++..+...+.-+....+ ....
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D----------------nskf 74 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD----------------NSKF 74 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc----------------cccc
Confidence 467889999999999999999999999999999999999999998887766554443322 2344
Q ss_pred cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEee-cCCceEE
Q 009614 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTS 433 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~--~~l~~~~-h~~~V~s 433 (531)
.+++.|..+.+|+..+ ++.+..+.+|.+.|+.+.|+... .+++|+.|.++++||.++. ++++.+. ..+.|.+
T Consensus 75 ~s~GgDk~v~vwDV~T----Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S 150 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNT----GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS 150 (307)
T ss_pred ccCCCCceEEEEEccc----CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence 6788899999999987 45688899999999999999988 9999999999999999864 5677775 6788999
Q ss_pred EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
|..+ +..|++|+.||++|.||++.++... +. ..+|++++|++||+..++++.|+++++.|-.+|++++.++-+
T Consensus 151 i~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 151 IDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred EEec---ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 9984 5789999999999999999998763 44 458999999999999999999999999999999999876644
No 68
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=9.1e-23 Score=187.96 Aligned_cols=240 Identities=21% Similarity=0.330 Sum_probs=193.4
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCcE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTV 308 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I 308 (531)
.+.+|...|..+.|.+|+..+++++.|.+|+.||..+++.. ..+++|.+-|+.+.-+.-| .++.||+.||++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~-------rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI-------RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceee-------ehhccccceeeecCccccCCeEEEecCCCceE
Confidence 34478888989999999999999999999999999976654 3478899999999855444 467888999999
Q ss_pred EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
++||+++...++.+.... +...+.|... ....+++.-+..+.+|+++.. ...+.+.||.
T Consensus 158 kl~D~R~k~~~~t~~~ky-qltAv~f~d~----------------s~qv~sggIdn~ikvWd~r~~----d~~~~lsGh~ 216 (338)
T KOG0265|consen 158 KLWDIRKKEAIKTFENKY-QLTAVGFKDT----------------SDQVISGGIDNDIKVWDLRKN----DGLYTLSGHA 216 (338)
T ss_pred EEEeecccchhhccccce-eEEEEEeccc----------------ccceeeccccCceeeeccccC----cceEEeeccc
Confidence 999999887766653211 1112222111 123356777888999998663 4478999999
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCC----CeEEEEee---cC--CceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----DRCLRVFS---HN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~----~~~l~~~~---h~--~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~ 458 (531)
..|+.|..+|+| ++++-++|.++++||++. .+++..|. |+ .....++|+| ++.++.+|+.|..+++||.
T Consensus 217 DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 217 DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWDT 295 (338)
T ss_pred CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEeec
Confidence 999999999999 999999999999999973 45677774 33 3456778999 9999999999999999999
Q ss_pred CCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614 459 RRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 459 ~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 498 (531)
.....+ .+.+|...|.++.|+|....|.+++.|.+|++=.
T Consensus 296 ~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 296 TSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 986554 7999999999999999999999999999988743
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-22 Score=205.01 Aligned_cols=238 Identities=17% Similarity=0.331 Sum_probs=199.8
Q ss_pred eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcc-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
.+.+.++.|+++|.+||+|..+|.|.|||...... ...+.+ |...|-+++|+ +..+.+|+.|+.|..+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-------~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-------TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-------cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 35677899999999999999999999999885443 334666 99999999998 668999999999999999
Q ss_pred ccCccccc-eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614 314 IEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (531)
Q Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 392 (531)
...+.... +..+...+..+.|..+. .....++.|..+.+|+... ..++..+..|.+.|.
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~----------------~~lASGgnDN~~~Iwd~~~----~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDG----------------NQLASGGNDNVVFIWDGLS----PEPKFTFTEHTAAVK 347 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCC----------------CeeccCCCccceEeccCCC----ccccEEEeccceeee
Confidence 98876555 55555555555554433 3446788899999999833 567888999999999
Q ss_pred EEEEcCCC--eEEEEe--CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEE--EeCCCeEEEEeCCCCeEE-E
Q 009614 393 DLSWSKNG--FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRCQVV-D 465 (531)
Q Consensus 393 ~l~~sp~~--~l~s~s--~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~s--gs~Dg~I~Iwd~~~~~~~-~ 465 (531)
.++|+|-. +||+|+ .|++|++||..++..+.......+|.+|.|++ ..+-|++ |..++.|.||+..+.+.+ .
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccceeee
Confidence 99999965 888875 79999999999999999999999999999999 5554554 345778999999997766 6
Q ss_pred ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999999775
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=3.7e-23 Score=198.75 Aligned_cols=201 Identities=23% Similarity=0.344 Sum_probs=175.2
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 320 (531)
+...|....+++|+.|..+.++|..... ....+.||...|+.+.|+|+...+++++.|..|+||.......
T Consensus 225 ld~~~s~~~ilTGG~d~~av~~d~~s~q-------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-- 295 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDKTAVLFDKPSNQ-------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-- 295 (506)
T ss_pred EeecCCCCcceecCCCCceEEEecchhh-------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence 4455556899999999999999987544 3346899999999999999999999999999999998744321
Q ss_pred ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC
Q 009614 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (531)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~ 400 (531)
......|..+|+.+..+|+|
T Consensus 296 ------------------------------------------------------------~~~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 296 ------------------------------------------------------------PTSSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred ------------------------------------------------------------ccccccccccceeeeeccCC
Confidence 12245689999999999999
Q ss_pred -eEEEEeCCCcEEEEECCCCeEEEEeecC---CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEE
Q 009614 401 -FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA 475 (531)
Q Consensus 401 -~l~s~s~Dg~V~lwdl~~~~~l~~~~h~---~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~ 475 (531)
||++++.|++..+.|++++.++....+. -.+++.+||| ||.+|.+|..||.|+|||+..+..+ .+.+|.++|.+
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 9999999999999999999999888764 3489999999 9999999999999999999998766 68999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 476 v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
|+|+.+|-+|++++.|+.|++||++.-+.+.++++.
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~ 430 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD 430 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceeecc
Confidence 999999999999999999999999988877766643
No 71
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=3.5e-24 Score=200.33 Aligned_cols=250 Identities=20% Similarity=0.359 Sum_probs=194.8
Q ss_pred hhhhcccccccc----ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEE
Q 009614 217 KRKVKRGWLKKL----GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF 292 (531)
Q Consensus 217 ~k~~~~~w~~~~----~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f 292 (531)
+-...+.|.+.. ..+.+|.+.|-|+.| +.+.+++|+.|.+|+|||++++. +.+++.+|..+|..+.|
T Consensus 215 rDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge-------~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE-------PLNTLIHHCEAVLHLRF 285 (499)
T ss_pred ccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc-------hhhHHhhhcceeEEEEE
Confidence 334456676643 346666666665554 66799999999999999999655 33467889999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcccCcccc---ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEe
Q 009614 293 SLDGQYLASGGEDGTVRVWKVIEHERLD---GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL 369 (531)
Q Consensus 293 spdg~~Lasgs~Dg~I~iWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (531)
+ ..+++|++.|.+|.+||+.....+. .+..+...+. .++++. .+.+++++|.++.+|
T Consensus 286 ~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN-------------vVdfd~-----kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 286 S--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN-------------VVDFDD-----KYIVSASGDRTIKVW 345 (499)
T ss_pred e--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee-------------eecccc-----ceEEEecCCceEEEE
Confidence 7 4589999999999999997654221 1222222222 222222 256788999999999
Q ss_pred CCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEe
Q 009614 370 PPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS 448 (531)
Q Consensus 370 ~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs 448 (531)
+..+. ..+.++.+|...|-|+.+.. .++++|+.|.+|++||+..|.+++.+. |..-|.||.| +.+.+++|+
T Consensus 346 ~~st~----efvRtl~gHkRGIAClQYr~-rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGa 417 (499)
T KOG0281|consen 346 STSTC----EFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGA 417 (499)
T ss_pred eccce----eeehhhhcccccceehhccC-eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeecc
Confidence 98774 45788999999999998742 299999999999999999999999996 9999999999 568999999
Q ss_pred CCCeEEEEeCCCCeE----------EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614 449 IDGKVRIWEVRRCQV----------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 449 ~Dg~I~Iwd~~~~~~----------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~ 505 (531)
.||+|+|||+.++.- ..+..|.+.|..+.| |...+++++.|.+|.|||..++-.-
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 999999999987531 146678889999988 5678999999999999999876554
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=4.1e-23 Score=197.40 Aligned_cols=239 Identities=19% Similarity=0.283 Sum_probs=192.8
Q ss_pred ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (531)
Q Consensus 227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (531)
..+++.+....+.++.|.+++.++++++.|+.+++|++.. .....++.||++.|+++.|......+++|+.|.
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-------~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DR 283 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-------LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADR 283 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-------hhhhhhhcccccceeeehhhccccceeeccccc
Confidence 3456777778888999999999999999999999999984 334456899999999999998777799999999
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
+|++||+....+.+++.........+. .....+++..+.++..|+.+... +......
T Consensus 284 tiK~WDl~k~~C~kt~l~~S~cnDI~~-------------------~~~~~~SgH~DkkvRfwD~Rs~~----~~~sv~~ 340 (459)
T KOG0288|consen 284 TIKLWDLQKAYCSKTVLPGSQCNDIVC-------------------SISDVISGHFDKKVRFWDIRSAD----KTRSVPL 340 (459)
T ss_pred hhhhhhhhhhheeccccccccccceEe-------------------cceeeeecccccceEEEeccCCc----eeeEeec
Confidence 999999998877666533222111000 01223556667778888876633 3444554
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
+. .|+++..++++ .|++++.|.++.+.|+++.....++. .....+.++|+| ++.|+++||.||.|+||++.+
T Consensus 341 gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 341 GG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred Cc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccC
Confidence 44 89999999999 89999999999999999999988885 344589999999 999999999999999999999
Q ss_pred CeEEE-e--cCCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614 461 CQVVD-Y--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (531)
Q Consensus 461 ~~~~~-~--~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 497 (531)
+++.. + ......|++++|+|.|.+|++++.++.+.+|
T Consensus 419 gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 419 GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99874 2 2233369999999999999999999999999
No 73
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=9.7e-23 Score=182.68 Aligned_cols=251 Identities=20% Similarity=0.245 Sum_probs=194.3
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I 308 (531)
.+.|.+.+..+...-.|+.||+++.|++|+|+....... .+...+|.||.++|+.++|.. .|.+||+++.||.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 455777777777778899999999999999999986553 234568999999999999965 89999999999999
Q ss_pred EEEEcccCcc--ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 309 RVWKVIEHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 309 ~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
.||.-.+++- ......+...+.++.+.+...+.+++. ++.|+.+.+...+.-.. .........
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac--------------asSDG~vsvl~~~~~g~-w~t~ki~~a 147 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC--------------ASSDGKVSVLTYDSSGG-WTTSKIVFA 147 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEE--------------eeCCCcEEEEEEcCCCC-ccchhhhhc
Confidence 9999888753 344567777888899988887666544 34444444433322100 112344577
Q ss_pred CCCCeeEEEEcCCC---------------eEEEEeCCCcEEEEECCCCeEE--EEe-ecCCceEEEEEeeCCC---CEEE
Q 009614 387 HSSEVLDLSWSKNG---------------FLLSSSADKTVRLWQVGIDRCL--RVF-SHNNYVTSVAFNPVDD---NYFI 445 (531)
Q Consensus 387 h~~~I~~l~~sp~~---------------~l~s~s~Dg~V~lwdl~~~~~l--~~~-~h~~~V~sv~fsp~d~---~~l~ 445 (531)
|.-.|++++|.|.. .|++|+.|..|+||+...++.+ +++ .|.+.|..++|.|..+ .+||
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 99999999999851 4999999999999999886433 223 3999999999999532 4899
Q ss_pred EEeCCCeEEEEeCCCC----eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 446 SGSIDGKVRIWEVRRC----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 446 sgs~Dg~I~Iwd~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
+++.||+|.||-.+.. +...+......++.+.|++.|+.|++++.|+.|.+|.-.
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9999999999987732 122245567889999999999999999999999999654
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=1.4e-22 Score=211.99 Aligned_cols=242 Identities=22% Similarity=0.391 Sum_probs=206.2
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 310 (531)
+.+|.+.+.++++...+..+++|+.|.+++|||..++. +...+.+|.+.|.++... ..++++|+.|.+|++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV 315 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------EEEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence 66788888889998889999999999999999988544 456789999999999885 557889999999999
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
|++.++..+..+..+...+.++... ....++++.++.+.+|+... .+.++.+.+|.+.
T Consensus 316 W~v~n~~~l~l~~~h~~~V~~v~~~------------------~~~lvsgs~d~~v~VW~~~~----~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 316 WDVTNGACLNLLRGHTGPVNCVQLD------------------EPLLVSGSYDGTVKVWDPRT----GKCLKSLSGHTGR 373 (537)
T ss_pred EeccCcceEEEeccccccEEEEEec------------------CCEEEEEecCceEEEEEhhh----ceeeeeecCCcce
Confidence 9999999888887776666666553 23346788889999999984 5679999999999
Q ss_pred eeEEEEcCCCeEEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec
Q 009614 391 VLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT 467 (531)
Q Consensus 391 I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~ 467 (531)
|.++.+.+..++++|+.|++|++||+++. +|+.++. |...|..+.+ .+++|++++.|++|++||..+++++. +.
T Consensus 374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred EEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeec
Confidence 99998887569999999999999999999 9999987 7777777776 56899999999999999999999885 44
Q ss_pred C-CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614 468 D-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 468 ~-~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~ 508 (531)
. +...|+++++. ...+++++.||.+++||++++++....
T Consensus 451 ~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 451 GRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 4 45888888876 467899999999999999999988755
No 75
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.1e-23 Score=194.42 Aligned_cols=244 Identities=16% Similarity=0.268 Sum_probs=195.3
Q ss_pred cccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614 228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (531)
.+.+.+|.+.|.+++=+|.. ..+|+|+.||.|+|||+.... +...+++|.+.|.+|++.. ..++++|.|+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-------~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-------CIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-------hhheeecccCceeeEEecc--cceEEecCCc
Confidence 45679999999999999988 789999999999999998443 3456899999999999986 6789999999
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
+|+.|.+... ...++... ..+..++. ........+....+-+|+... ..|+..+.-
T Consensus 130 tvK~wk~~~~-p~~tilg~--------------s~~~gIdh-----~~~~~~FaTcGe~i~IWD~~R----~~Pv~smsw 185 (433)
T KOG0268|consen 130 TVKQWKIDGP-PLHTILGK--------------SVYLGIDH-----HRKNSVFATCGEQIDIWDEQR----DNPVSSMSW 185 (433)
T ss_pred ceeeeeccCC-cceeeecc--------------cccccccc-----ccccccccccCceeeeccccc----CCccceeec
Confidence 9999987542 11111110 00111100 011112334455677888765 457888887
Q ss_pred CCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe-E
Q 009614 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-V 463 (531)
Q Consensus 387 h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-~ 463 (531)
....|.++.|+|.. .|++|+.|+.|.|||++++.+++.....-.-+.|+|+| ..-.|++|+.|..++.||++..+ +
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p 264 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRP 264 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhccc
Confidence 88899999999977 88899999999999999999999888777788999999 89999999999999999999754 3
Q ss_pred E-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 464 ~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~ 505 (531)
+ ...+|...|..|.|+|.|+-+++|+.|.+|+||.++.+.-.
T Consensus 265 ~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 265 LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred chhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcch
Confidence 3 47899999999999999999999999999999999877643
No 76
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=3.6e-22 Score=193.59 Aligned_cols=251 Identities=18% Similarity=0.236 Sum_probs=193.1
Q ss_pred eeccccceeeeCCCCe-EEeeecCCeEEEEeCCCCccccc---ccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcE
Q 009614 234 IIDRHGSATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTV 308 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~-lasgs~dg~I~vwd~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I 308 (531)
|.+.|+.+..-|+... +|+++..+.|.|||+.+...... .....-.+.+|++.-++|+|++. .-.|++|+.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 4455666677776654 56688899999999987654332 23344478999998899999994 3489999999999
Q ss_pred EEEEcccCccc-------cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcce
Q 009614 309 RVWKVIEHERL-------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (531)
Q Consensus 309 ~iWd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (531)
.+||+...... ..+..+...+.-+.|.+.+. ....+.+.++.+.+|+.+.. ..++.
T Consensus 203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~---------------~lF~sv~dd~~L~iwD~R~~--~~~~~ 265 (422)
T KOG0264|consen 203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE---------------DLFGSVGDDGKLMIWDTRSN--TSKPS 265 (422)
T ss_pred EEEeccccccCCccccceEEeecCCcceehhhccccch---------------hhheeecCCCeEEEEEcCCC--CCCCc
Confidence 99999765431 12233333333333333332 23345678889999999984 67888
Q ss_pred eEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614 382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (531)
Q Consensus 382 ~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd 457 (531)
+...+|.+.|+|++|+|-+ .||+|+.|++|+|||+++. +++.++. |...|.+|.|+|.....||+++.|+.+.|||
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 8999999999999999977 9999999999999999964 4566664 9999999999998889999999999999999
Q ss_pred CCCC-e--------------EEEecCCCCceEEEEEccCCCE-EEEEeCCCcEEEEeCCC
Q 009614 458 VRRC-Q--------------VVDYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 458 ~~~~-~--------------~~~~~~~~~~v~~v~~spdg~~-l~sgs~dg~I~iwd~~~ 501 (531)
+..- + +..-.+|...|..+.|+|+..+ |++.+.|+.++||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9751 1 1245688999999999997754 67788999999999874
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=4.8e-22 Score=210.86 Aligned_cols=242 Identities=24% Similarity=0.347 Sum_probs=184.6
Q ss_pred cccceeeeCCCCeEEeee--cCCeEEEEeCCCCcccccc-----cccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 237 RHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSS-----LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 237 ~~~s~~fspdg~~lasgs--~dg~I~vwd~~~~~~~~~~-----~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
.+-++.++|+|..+|+|+ .|+.++||+...-..+... ....-....|.+.|+|+.|+|||++||+|++|+.|.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 356789999999999999 8999999988743321111 112234678999999999999999999999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
||..... ..... +...+ ....+ .. -+.+..+.+|..
T Consensus 95 iW~~~~~-~~~~~----------fgs~g------------------------~~~~v-----E~----wk~~~~l~~H~~ 130 (942)
T KOG0973|consen 95 IWERAEI-GSGTV----------FGSTG------------------------GAKNV-----ES----WKVVSILRGHDS 130 (942)
T ss_pred Eeeeccc-CCccc----------ccccc------------------------ccccc-----ce----eeEEEEEecCCC
Confidence 9997541 10000 00000 00000 00 134677889999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe-----
Q 009614 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----- 462 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~----- 462 (531)
.|.+++|+|++ +|++++.|++|.||+..+...+.++. |...|-.+.|.| -|+|||+-+.|++|+||++.+..
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEee
Confidence 99999999999 99999999999999999999999886 999999999999 99999999999999999965311
Q ss_pred ---------------------------------------E---------EEecCCCCceEEEEEccC-----CC------
Q 009614 463 ---------------------------------------V---------VDYTDIREIVSAVCYCPD-----GK------ 483 (531)
Q Consensus 463 ---------------------------------------~---------~~~~~~~~~v~~v~~spd-----g~------ 483 (531)
+ ..+.+|..++..+.|+|. .+
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~ 289 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQ 289 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccC
Confidence 1 135689999999999981 11
Q ss_pred ------EEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 484 ------GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 484 ------~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
.+|+|+.|++|-||.....+++..+ +....+.|..++|+|
T Consensus 290 ~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi-------~~lf~~SI~DmsWsp 335 (942)
T KOG0973|consen 290 PNCYYCIAAVGSQDRSLSVWNTALPRPLFVI-------HNLFNKSIVDMSWSP 335 (942)
T ss_pred CCcceEEEEEecCCccEEEEecCCCCchhhh-------hhhhcCceeeeeEcC
Confidence 5788999999999999777665432 233456788888876
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.6e-22 Score=194.20 Aligned_cols=219 Identities=22% Similarity=0.329 Sum_probs=178.2
Q ss_pred eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
-.+.+.+++|+|...+=.+-...-++.||+...... .+++...+..|+++.|..||++||.|...|.|+|+|+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~-------~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV-------RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh-------hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence 346777899999877655544567899998774332 2234556788999999999999999999999999996
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 393 (531)
.+.. .+..+++|+.+|..
T Consensus 98 k~r~--------------------------------------------------------------iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 98 KSRV--------------------------------------------------------------ILRQLYAHQAPVHV 115 (487)
T ss_pred ccHH--------------------------------------------------------------HHHHHhhccCceeE
Confidence 4422 14557789999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-eEEEecCC
Q 009614 394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDI 469 (531)
Q Consensus 394 l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-~~~~~~~~ 469 (531)
+.|+|++ .|++|+.|+.+++||+.+......+ .|.++|.|.+|+|..+.++++|+.||+|++||++.. ..+....|
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh 195 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH 195 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence 9999987 8999999999999999998864344 499999999999988889999999999999999987 56667889
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV 529 (531)
Q Consensus 470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~ 529 (531)
..+|..+.+-|.|..|++++ ...|++||+.+|..... ....|.|.||++.+.
T Consensus 196 g~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~-------~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLT-------SMFNHNKTVTCLRLA 247 (487)
T ss_pred CCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehh-------hhhcccceEEEEEee
Confidence 99999999999999999988 45799999995544321 233477899999885
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=180.99 Aligned_cols=232 Identities=20% Similarity=0.304 Sum_probs=183.7
Q ss_pred eEEeeecCCeEEEEeCCCCcccc-----cccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccccee
Q 009614 249 ELTLGQRMRRVRVHPVKKQSREL-----SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (531)
Q Consensus 249 ~lasgs~dg~I~vwd~~~~~~~~-----~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 323 (531)
.+++|+....|.=+++...+... ..+...-.+.+|.++|++|+.+ +.++|+||.|-+|+|||+.+...+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 46788888888877776554211 1222233578999999999995 8999999999999999999999988888
Q ss_pred cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eE
Q 009614 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL 402 (531)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l 402 (531)
.+...+.++.|.+.... ..++++..|+.+.+|+...|.. +..+++|.+.|+.|+++|.+ +-
T Consensus 81 ~HagsitaL~F~~~~S~--------------shLlS~sdDG~i~iw~~~~W~~----~~slK~H~~~Vt~lsiHPS~KLA 142 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSK--------------SHLLSGSDDGHIIIWRVGSWEL----LKSLKAHKGQVTDLSIHPSGKLA 142 (362)
T ss_pred ccccceEEEEecCCcch--------------hheeeecCCCcEEEEEcCCeEE----eeeecccccccceeEecCCCceE
Confidence 88888887777655421 2557889999999999999854 78899999999999999999 77
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCC----------------------------------------ceEEEEEeeCCCC
Q 009614 403 LSSSADKTVRLWQVGIDRCLRVFSHNN----------------------------------------YVTSVAFNPVDDN 442 (531)
Q Consensus 403 ~s~s~Dg~V~lwdl~~~~~l~~~~h~~----------------------------------------~V~sv~fsp~d~~ 442 (531)
++.+.|+.+++||+-.|+.-....-.. .+.|+.|- ++.
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~ 220 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGS 220 (362)
T ss_pred EEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCc
Confidence 888999999999997665433332222 23333332 677
Q ss_pred EEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEE--ccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 443 YFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY--CPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 443 ~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~--spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
++++|..|+.|.+||.....+. .+.+|...|-.+.+ .|++.+|++++.||.|++||++..
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 8889999999999999987666 48899999998884 467899999999999999999876
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=5.7e-22 Score=187.88 Aligned_cols=258 Identities=19% Similarity=0.264 Sum_probs=190.1
Q ss_pred cceeeeccccceeeeCCC---CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614 230 AMARIIDRHGSATLKPGD---HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg---~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 306 (531)
.+.+|.+++.++++.-.. ..+++++.|.++++|.++........... .+||..+|-+|...++|..+++|+.|.
T Consensus 139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV---CRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH---hcccccceeEEEecCCCCeEEeecccc
Confidence 456666677655443333 35999999999999999977765554333 349999999999999999999999999
Q ss_pred cEEEEEcccCc--cc----------cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccc
Q 009614 307 TVRVWKVIEHE--RL----------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (531)
Q Consensus 307 ~I~iWd~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (531)
+|+||+..+.. .+ ............+.....+...+..+.+.. ....++.+.|.++..|+....
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d----~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD----ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC----CCceEeecccceEEEEEeecc
Confidence 99999932111 00 001111111222333344444444443333 234467788899999998764
Q ss_pred cccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe---EEEEe-ecCCceEEEEEeeCCCCEEEEEeC
Q 009614 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---CLRVF-SHNNYVTSVAFNPVDDNYFISGSI 449 (531)
Q Consensus 375 ~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~---~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~ 449 (531)
.. ...+. ....++++.++|.. +|++|+.|..|++||.+++. ....| .|++.|.++.|+|.+...|++|+.
T Consensus 292 ~~----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 292 GL----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred cc----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEec
Confidence 43 22222 35679999999987 99999999999999998753 22333 599999999999988899999999
Q ss_pred CCeEEEEeCCCCe--EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 450 DGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 450 Dg~I~Iwd~~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
|+++++||+++.+ +..+.+|.+.|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus 367 D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 367 DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999999999876 45799999999999998 56689999999999999643
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=3e-22 Score=212.37 Aligned_cols=261 Identities=19% Similarity=0.247 Sum_probs=205.8
Q ss_pred ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCC-----------CcccccccccceEEcccCCCEEEEEEccC
Q 009614 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------QSRELSSLYTGQEFLAHEGSILTMKFSLD 295 (531)
Q Consensus 227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~-----------~~~~~~~~~~~~~l~~H~~~I~~l~fspd 295 (531)
.+..+..|...++|+.|+|||++||+|+.|+.|.||.... +......+.....+.+|...|..++|+|+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3445666788899999999999999999999999999883 12223344456678999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc
Q 009614 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (531)
Q Consensus 296 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (531)
+.+||+++.|++|.|||..+.+.+..+..|...+..+.|.|... +..+.+.|..+.+|....|.
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk----------------y~ASqsdDrtikvwrt~dw~ 204 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK----------------YFASQSDDRTLKVWRTSDWG 204 (942)
T ss_pred ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC----------------eeeeecCCceEEEEEcccce
Confidence 99999999999999999999999999999998888887766542 33566788899999877766
Q ss_pred ccCcceeEee--cCCCCeeEEEEcCCC-eEEEEe----CCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeC--------
Q 009614 376 LLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV-------- 439 (531)
Q Consensus 376 ~~~~~~~~~~--~h~~~I~~l~~sp~~-~l~s~s----~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~-------- 439 (531)
+.......+. .-...+..+.|+|+| +|++.. .-.++.|.+-.+-+.-..| +|..++.++.|+|.
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKN 284 (942)
T ss_pred eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccccc
Confidence 5432222222 123457889999999 887754 2345888887776654444 69999999999983
Q ss_pred ----CCC----EEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 440 ----DDN----YFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 440 ----d~~----~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
..+ .+|+|+.|++|-||.....+++- ..-....|..++|+|||..|.+++.||+|.++.++..+
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 121 68899999999999998877763 23346689999999999999999999999999997644
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.8e-23 Score=193.94 Aligned_cols=174 Identities=26% Similarity=0.472 Sum_probs=155.7
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccC
Q 009614 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (531)
Q Consensus 282 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (531)
+.++.+-|..|+|||+||++|+.||-|-+||..+|+..+.++-..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA----------------------------------- 255 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA----------------------------------- 255 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-----------------------------------
Confidence 556778899999999999999999999999999988655443211
Q ss_pred CCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEee
Q 009614 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP 438 (531)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp 438 (531)
...+--+..+|.|+.|+.+. .|++|+.||.|++|.+++|+|++.|. |...|+|+.|+.
T Consensus 256 -------------------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr 316 (508)
T KOG0275|consen 256 -------------------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR 316 (508)
T ss_pred -------------------hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence 12233467899999999998 99999999999999999999999996 999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 439 VDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 439 ~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
|+..+++++.|.++||.-+.++++++ +.+|..-|+.+.|++||..+++++.||+|++|+.++.+++.+++.
T Consensus 317 -D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 317 -DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred -CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence 89999999999999999999999985 899999999999999999999999999999999999999887763
No 83
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.3e-21 Score=178.88 Aligned_cols=226 Identities=16% Similarity=0.248 Sum_probs=179.8
Q ss_pred eccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 235 IDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 235 ~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
.+.+.+++|+| ...++++|+.|++||+|++...... ..+....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-----~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-----VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcc-----cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 37788899999 5566679999999999999864221 12345679999999999999999999999999999999
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 393 (531)
.+++ +..+..|.++|..
T Consensus 102 ~S~Q---------------------------------------------------------------~~~v~~Hd~pvkt 118 (347)
T KOG0647|consen 102 ASGQ---------------------------------------------------------------VSQVAAHDAPVKT 118 (347)
T ss_pred cCCC---------------------------------------------------------------eeeeeecccceeE
Confidence 8875 3345669999999
Q ss_pred EEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE---Eec
Q 009614 394 LSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYT 467 (531)
Q Consensus 394 l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~---~~~ 467 (531)
+.|-+.. .|++|+.|++|+.||.+...++.++..+..+.++.. -..+++++..+..|.+|+++++... ...
T Consensus 119 ~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---~~pm~vVata~r~i~vynL~n~~te~k~~~S 195 (347)
T KOG0647|consen 119 CHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---LYPMAVVATAERHIAVYNLENPPTEFKRIES 195 (347)
T ss_pred EEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---cCceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence 9998765 899999999999999999999999999999999876 3468888999999999999876543 133
Q ss_pred CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc--ccC-CCceeeeEEEeeC
Q 009614 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK--KKL-PGKRITGFQVVKI 531 (531)
Q Consensus 468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~--kk~-~~~~It~l~f~p~ 531 (531)
..+-.+.+|+..+|....+.|+..|.+.|..+..+.....+.+.-... ... ..-.|.+|+|.|.
T Consensus 196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~ 262 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV 262 (347)
T ss_pred cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc
Confidence 355678999999999999999999999999998875444333221111 011 1346788899874
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.3e-22 Score=200.01 Aligned_cols=241 Identities=20% Similarity=0.305 Sum_probs=203.1
Q ss_pred CCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC--ccccce
Q 009614 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH--ERLDGF 322 (531)
Q Consensus 245 pdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~--~~~~~~ 322 (531)
|++++|.+|++||.|++|+......+.+..+ ...++.|...|+.+....+|+.|++++.|-+|++|+...+ -++..+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~-~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPY-IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccch-hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence 5677899999999999999986665544332 3468899999999999999999999999999999999877 577788
Q ss_pred ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc------cCcceeEee-cCCCCeeEEE
Q 009614 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL------LEKPLHEFQ-GHSSEVLDLS 395 (531)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~h~~~I~~l~ 395 (531)
..|...+.|+....... ....+++-+..+.+|+...... ...+...+. |+...|.+++
T Consensus 114 r~H~DYVkcla~~ak~~---------------~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNN---------------ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred hcccchheeeeecccCc---------------eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 88888888887742221 2235677888899999875411 123344444 8999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCc
Q 009614 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREI 472 (531)
Q Consensus 396 ~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~ 472 (531)
.++.| .+++|+..+.+++||.++.+.+..+ +|...|.++..++ ||..+++++.||+|++||+...+++ .+..|...
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 99999 9999999999999999998777666 5999999999999 9999999999999999999999988 58889999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
|+++..+|+-.++++|+.||.|..=|+++.
T Consensus 258 VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 258 VWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999999999999999874
No 85
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=3.9e-22 Score=179.26 Aligned_cols=261 Identities=16% Similarity=0.226 Sum_probs=213.6
Q ss_pred eeccccceeee---CCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614 234 IIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (531)
Q Consensus 234 ~~~~~~s~~fs---pdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 310 (531)
|..+|..++|+ |+|-+|+++++|+.-.+.+-.++.. .-++.||+++|+...++.+...-|+++.|-+-+|
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-------igtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-------IGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-------EEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 44556666655 6999999999999988887765443 2468999999999999999989999999999999
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
||..+|..+..+... .-+..+.|..+. ..+++++.+..+.+++.+.. ..|..++.+|++.
T Consensus 86 w~a~tgdelhsf~hk-hivk~~af~~ds----------------~~lltgg~ekllrvfdln~p---~App~E~~ghtg~ 145 (334)
T KOG0278|consen 86 WDAVTGDELHSFEHK-HIVKAVAFSQDS----------------NYLLTGGQEKLLRVFDLNRP---KAPPKEISGHTGG 145 (334)
T ss_pred hhhhhhhhhhhhhhh-heeeeEEecccc----------------hhhhccchHHHhhhhhccCC---CCCchhhcCCCCc
Confidence 999999887776432 223333333322 23456666666666665443 3567788999999
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC
Q 009614 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI 469 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~ 469 (531)
|..+.|.... .+++++.|++||+||.+++..++.+..+.+|+++.+++ ++.+|.++ ..+.|..||..+..+++....
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEe-cCceeEEeccccccceeeccC
Confidence 9999999877 88899999999999999999999999999999999999 88877664 567899999999999988888
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
...|.+..++|+...+++|+.|+.++.||..++..+..+ .|.+..+|..+.|+|
T Consensus 224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-------nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-------NKGHFGPVHCVRFSP 277 (334)
T ss_pred ccccccccccCCCceEEecCcceEEEEEeccCCceeeec-------ccCCCCceEEEEECC
Confidence 889999999999999999999999999999999887652 345678999999998
No 86
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=2.9e-22 Score=195.26 Aligned_cols=244 Identities=16% Similarity=0.215 Sum_probs=195.9
Q ss_pred ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCC
Q 009614 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGED 305 (531)
Q Consensus 227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~D 305 (531)
.+.++.+|...|..++|+++|..+++++.|+.|++||+.++.... .+. -...++|++|+|++ +.+++|+.|
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~-------~f~-~~~~~~cvkf~pd~~n~fl~G~sd 321 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS-------RFH-LDKVPTCVKFHPDNQNIFLVGGSD 321 (503)
T ss_pred eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE-------EEe-cCCCceeeecCCCCCcEEEEecCC
Confidence 345678888899999999999999999999999999999766432 121 13468999999988 789999999
Q ss_pred CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
+.|+.||+++++.++++..+...+..+.|..... ..++.+.+..+++|+.+..... .....
T Consensus 322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~----------------rFissSDdks~riWe~~~~v~i---k~i~~ 382 (503)
T KOG0282|consen 322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR----------------RFISSSDDKSVRIWENRIPVPI---KNIAD 382 (503)
T ss_pred CcEEEEeccchHHHHHHHhhhhheeeeEEccCCc----------------eEeeeccCccEEEEEcCCCccc---hhhcc
Confidence 9999999999999999988888887777766553 2355677778888887653321 11122
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE---EEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL---RVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l---~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~ 458 (531)
.+.-...++..+|++ .++.-+.|..|.++.+...-.+ +.|. -.++-..+.|+| |+.+|++|..||.+.+||.
T Consensus 383 ~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 383 PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDW 461 (503)
T ss_pred hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeec
Confidence 234456789999999 9999999999999987543222 2232 357778899999 9999999999999999999
Q ss_pred CCCeEE-EecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEe
Q 009614 459 RRCQVV-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 459 ~~~~~~-~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd 498 (531)
++.+++ .+..|..+++.+.|+|. ...+|+++.||.|++|+
T Consensus 462 kt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 462 KTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999888 58889999999999995 46799999999999996
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.2e-20 Score=173.89 Aligned_cols=260 Identities=12% Similarity=0.128 Sum_probs=204.4
Q ss_pred eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC--CCcEEEE
Q 009614 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE--DGTVRVW 311 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~iW 311 (531)
..+++.++.|+++|.++++++.|..|++||...+.. .+++..++-.|..++|......++.++. |.+||..
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-------~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-------VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-------eeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 346788999999999999999999999999985543 3456667778999999887777777766 8999999
Q ss_pred EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (531)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 391 (531)
++.+++.++-+..|...+..+...|... ..++++.|..+.+|+.++.+- ...+ +...-
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d----------------~FlS~S~D~tvrLWDlR~~~c----qg~l--~~~~~ 143 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDD----------------TFLSSSLDKTVRLWDLRVKKC----QGLL--NLSGR 143 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCC----------------eEEecccCCeEEeeEecCCCC----ceEE--ecCCC
Confidence 9999999999999888887777766542 236778889999999886432 1212 33344
Q ss_pred eEEEEcCCC-eEEEEeCCCcEEEEECCC--CeEEEEee----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614 392 LDLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 392 ~~l~~sp~~-~l~s~s~Dg~V~lwdl~~--~~~l~~~~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~ 464 (531)
...++.|.| ++|++.....|+|||++. ..+..+|. .....+.|.|+| +|++|+.+...+.+++.|.-+|.+.
T Consensus 144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~ 222 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVK 222 (311)
T ss_pred cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEe
Confidence 567899999 777777777999999985 34555554 456789999999 9999999999999999999999877
Q ss_pred E-ecCCCC---ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 465 D-YTDIRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 465 ~-~~~~~~---~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
. +..+.. .....+|+||++++++|+.||+|++|++++++.+..++.. ....+..++|+|
T Consensus 223 ~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------~~~~~~~~~fnP 285 (311)
T KOG1446|consen 223 STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------NGGPVSCVRFNP 285 (311)
T ss_pred eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------CCCCccccccCC
Confidence 3 333332 2367899999999999999999999999999998866532 234556666776
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=166.45 Aligned_cols=250 Identities=18% Similarity=0.258 Sum_probs=197.4
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc----CCCEEEEEeC-C
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGGE-D 305 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~Lasgs~-D 305 (531)
-..|+..+.|.+|+|+|+++|+|+.|.+|++..++........ ..-++.-|.+.|..++|-. .|.+|++++. |
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g--~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG--HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccC--cceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 3446778889999999999999999999999987754433322 2235778999999999954 4568888764 8
Q ss_pred CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
..|.+-|..+|+....+..+...+..++. + ......+++.+.++..|+.++..-....-..+.
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilalys------------w-----n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILALYS------------W-----NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH 225 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEEEE------------e-----cCcEEEccCCCceEEEEeeeccceeeeccCccc
Confidence 88999899888877777666655433321 1 123346788999999999887443222222222
Q ss_pred c---CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 386 G---HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 386 ~---h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
+ ....|..+++.|.| +|++|..|....+||++.++.++.|. |...|.|+.|+| ...|+++|+.|.+|++-|+..
T Consensus 226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeeccc
Confidence 2 23679999999999 99999999999999999999999985 999999999999 899999999999999999875
Q ss_pred C-----eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 461 C-----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 461 ~-----~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
. ..+....|.+.+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 305 dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 305 DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred chhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 3 234567889999999999999999999999999999764
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.6e-21 Score=192.81 Aligned_cols=252 Identities=20% Similarity=0.269 Sum_probs=201.5
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 320 (531)
+.|+ ..+.+|+|. ...|++|+....... +...-+...|+++.|+++|++||+|..+|.|.|||+.+.+.+.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~-------~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVT-------ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceE-------EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence 5677 444566663 467999998865521 1122347899999999999999999999999999999999888
Q ss_pred ceec-CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614 321 GFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (531)
Q Consensus 321 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~ 399 (531)
.+.. +...+.++.|.. .....++.++.+..++.+...... ..+.+|...|..++|+++
T Consensus 254 ~~~~~h~~rvg~laW~~------------------~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWNS------------------SVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPD 312 (484)
T ss_pred cccCCcCceeEEEeccC------------------ceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCC
Confidence 8877 666666666641 223567778888888877654332 248899999999999999
Q ss_pred C-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEe--CCCeEEEEeCCCCeEEEecCCCCceEE
Q 009614 400 G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTDIREIVSA 475 (531)
Q Consensus 400 ~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs--~Dg~I~Iwd~~~~~~~~~~~~~~~v~~ 475 (531)
+ +|++|+.|+.+.|||.....++..+ .|...|.+++|+|....+||+|+ .|++|++||..+++.+........|..
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs 392 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS 392 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee
Confidence 9 9999999999999999777666666 59999999999998899999965 699999999999999999999999999
Q ss_pred EEEccCCCEEEE--EeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 476 VCYCPDGKGGIV--GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 476 v~~spdg~~l~s--gs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
|.|++..+-|++ |..++.|.||+..+.+++... ..|..+|..++.+|
T Consensus 393 L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l--------~gH~~RVl~la~SP 441 (484)
T KOG0305|consen 393 LIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL--------LGHTSRVLYLALSP 441 (484)
T ss_pred EEEcCCCCEEEEecCCCCCcEEEEeccccceeeee--------cCCcceeEEEEECC
Confidence 999999877776 445778999999986655533 23456777777776
No 90
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.9e-23 Score=207.06 Aligned_cols=224 Identities=19% Similarity=0.406 Sum_probs=194.8
Q ss_pred ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 308 (531)
+...+|...++++.....++.+++|+.+..+-+|.+.+.....+ +.+|.++|.+|.|+++..+|++|+.+|+|
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S-------~~~hespIeSl~f~~~E~Llaagsasgti 94 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS-------LTGHESPIESLTFDTSERLLAAGSASGTI 94 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe-------eeccCCcceeeecCcchhhhcccccCCce
Confidence 34556777777777777889999999999999999886655443 88999999999999999999999999999
Q ss_pred EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
++||+.+++. ++++.+|.
T Consensus 95 K~wDleeAk~--------------------------------------------------------------vrtLtgh~ 112 (825)
T KOG0267|consen 95 KVWDLEEAKI--------------------------------------------------------------VRTLTGHL 112 (825)
T ss_pred eeeehhhhhh--------------------------------------------------------------hhhhhccc
Confidence 9999976543 45678899
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 009614 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD- 465 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~- 465 (531)
..+..+.|+|-+ +.++|+.|..+++||++...|.+.+. |...|.++.|+| +|.++++|+.|..++|||+..+++..
T Consensus 113 ~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 113 LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred cCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccc
Confidence 999999999999 88999999999999999989999987 889999999999 99999999999999999999999985
Q ss_pred ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
+..|...+.++.|+|..-+++.|+.|+++++||+++-+++....-. ...|.++.|+|
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--------~~~v~~~~fn~ 248 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--------TDGVRSLAFNP 248 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--------cCCceeeeecC
Confidence 7779999999999999999999999999999999987777544322 34556666665
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=5e-21 Score=185.63 Aligned_cols=228 Identities=18% Similarity=0.281 Sum_probs=184.9
Q ss_pred eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (531)
Q Consensus 233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 312 (531)
.|...+-++++++||++||+|+.|..|.||+..+.. ..+.+.+|.+.|.+++|-.....|++++.|+.|++|+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 566677789999999999999999999999998543 4456899999999999998888999999999999999
Q ss_pred cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (531)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 392 (531)
+.....+.++..++..+..+...... .....++.|.++.+|.. .......+.+|.+.+-
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~re----------------R~vtVGgrDrT~rlwKi-----~eesqlifrg~~~sid 331 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRE----------------RCVTVGGRDRTVRLWKI-----PEESQLIFRGGEGSID 331 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhccc----------------ceEEeccccceeEEEec-----cccceeeeeCCCCCee
Confidence 99998888887777655443322111 11123446777777765 3344567889999999
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee--c-----------CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--H-----------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (531)
Q Consensus 393 ~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~--h-----------~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~ 459 (531)
|++|..+.++++|+.+|.|.+|++.+.+++.+.. | +..|++++..| ..+++++|+.+|.|++|-+.
T Consensus 332 cv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 332 CVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred eEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEec
Confidence 9999988899999999999999999999887764 2 23799999999 99999999999999999998
Q ss_pred CC----eEEEecCCCCceEEEEEccCCCEEEEEe
Q 009614 460 RC----QVVDYTDIREIVSAVCYCPDGKGGIVGT 489 (531)
Q Consensus 460 ~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs 489 (531)
.+ .++.-....+-|++++|+++|+.|++|.
T Consensus 411 ~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 411 DGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred CCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 87 3344444678899999999999777764
No 92
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.8e-21 Score=170.78 Aligned_cols=225 Identities=18% Similarity=0.323 Sum_probs=172.5
Q ss_pred cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccC-ccccceecCCCCCeeE
Q 009614 255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEH-ERLDGFDVQDTDPSCL 332 (531)
Q Consensus 255 ~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~ 332 (531)
..|++.|.++...+. +...+.+ .-.+.+..|+|+++ .+.+++++.||+++|||+... ..+..++.+...+..+
T Consensus 36 G~G~L~ile~~~~~g----i~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Sv 110 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKG----IQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSV 110 (311)
T ss_pred cCceEEEEecCCCCC----eEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEe
Confidence 368999998863221 1111222 23578999999994 568899999999999996432 2344444444444333
Q ss_pred EEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCc
Q 009614 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKT 410 (531)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~ 410 (531)
.+ ... .....+..+-|+++.+|++.. .+.+.++.+|..-|...+|+|.- .+++++.|++
T Consensus 111 dw-------------n~~--~r~~~ltsSWD~TiKLW~~~r----~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 111 DW-------------NTV--RRRIFLTSSWDGTIKLWDPNR----PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred cc-------------ccc--cceeEEeeccCCceEeecCCC----CcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 33 222 223335558899999999876 44588899999999999999975 9999999999
Q ss_pred EEEEECCC-CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCceEEEEEccCC-CEEE
Q 009614 411 VRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDG-KGGI 486 (531)
Q Consensus 411 V~lwdl~~-~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~~~~~~v~~v~~spdg-~~l~ 486 (531)
+++||++. ++.+....|...+.|+.|+..+.+.+++|+.|+.|++||+++-+.. .+.+|.-.|..|.|+|.. ..|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999985 5555544599999999999989999999999999999999986532 588999999999999964 6889
Q ss_pred EEeCCCcEEEEeCCCCe
Q 009614 487 VGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 487 sgs~dg~I~iwd~~~~~ 503 (531)
+++.|-+++|||...+.
T Consensus 252 SasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQD 268 (311)
T ss_pred hccccceEEecccccch
Confidence 99999999999987443
No 93
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=1.1e-19 Score=177.89 Aligned_cols=285 Identities=20% Similarity=0.238 Sum_probs=205.0
Q ss_pred ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEccc-CCCEEEEEEccCCCEEEEEeCCCc
Q 009614 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDGT 307 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs~Dg~ 307 (531)
+.+.+..+.+....|+|.+..++.....+.+..|+......... ...+.++ +.-|.||+|.++|+ ++||..+|.
T Consensus 194 ~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~----~~~fek~ekk~Vl~v~F~engd-viTgDS~G~ 268 (626)
T KOG2106|consen 194 GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR----QGIFEKREKKFVLCVTFLENGD-VITGDSGGN 268 (626)
T ss_pred CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE----eeccccccceEEEEEEEcCCCC-EEeecCCce
Confidence 45666777788889999998888777789999998876543211 1123332 36799999999996 789999999
Q ss_pred EEEEEcccCccccceecCCCCCeeEEEeecC-------Ccceeeeecccccccccc---------c-cccCCCceEEEeC
Q 009614 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINH-------LSQLIPIDVDKEKIDKTK---------S-LRKSSDLTCVVLP 370 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~ 370 (531)
|.||+..+.+..+....+...+.++.+..+. ...++.++.+-.+..... . ..+..+ +++-.
T Consensus 269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGT 346 (626)
T KOG2106|consen 269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILVGT 346 (626)
T ss_pred EEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCc--EEEee
Confidence 9999998888777766777777776654332 122222221111111000 0 011111 22222
Q ss_pred Cccccc----cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614 371 PKVFRL----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (531)
Q Consensus 371 ~~~~~~----~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~ 445 (531)
.+.+-+ .........+|......++.+|+. .+++++.|+.+++|+ ..+++.+.....++.|+.|+| .+ .+|
T Consensus 347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va 422 (626)
T KOG2106|consen 347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVA 422 (626)
T ss_pred ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEE
Confidence 221111 123344567899999999999998 999999999999999 666666666788999999999 77 999
Q ss_pred EEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeee
Q 009614 446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (531)
Q Consensus 446 sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~ 525 (531)
.|...|...+.|..+...+......++++.+.|+|+|.+||+|+.|+.|+||.+..+......- .|.++..||.
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~------~k~~gs~ith 496 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV------GKCSGSPITH 496 (626)
T ss_pred EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe------eeecCceeEE
Confidence 9999999999999998888766669999999999999999999999999999997654433221 2334489999
Q ss_pred EEEee
Q 009614 526 FQVVK 530 (531)
Q Consensus 526 l~f~p 530 (531)
+.|++
T Consensus 497 LDwS~ 501 (626)
T KOG2106|consen 497 LDWSS 501 (626)
T ss_pred eeecC
Confidence 99875
No 94
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.4e-21 Score=199.86 Aligned_cols=237 Identities=18% Similarity=0.248 Sum_probs=190.0
Q ss_pred eeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCcc
Q 009614 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER 318 (531)
Q Consensus 241 ~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~ 318 (531)
+.|.. +.++||+++..|.|.+||+...... .....|..|+..|+++.|++ ...+|+||+.||+|++||++..+.
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRN----KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccc----hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 44443 4578999999999999999863211 12235788999999999998 567899999999999999999988
Q ss_pred ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (531)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp 398 (531)
...+......+.-+.|.+.....+ .+....+.+..|+.+..+ ++...+..|.++|.|+.|+|
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F---------------~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhP 230 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKF---------------ASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHP 230 (839)
T ss_pred cccccccchhhhceeeccCCCceE---------------EEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecC
Confidence 888877777777777777664333 455667788899988765 45677889999999999999
Q ss_pred CC-eEEEEeCCCcEEEEECCCCe--EEEEeecCCceEEEEEeeCCCCEEEEEeC--CCeEEEEeCCCCeEE--EecCCCC
Q 009614 399 NG-FLLSSSADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVRIWEVRRCQVV--DYTDIRE 471 (531)
Q Consensus 399 ~~-~l~s~s~Dg~V~lwdl~~~~--~l~~~~h~~~V~sv~fsp~d~~~l~sgs~--Dg~I~Iwd~~~~~~~--~~~~~~~ 471 (531)
++ +||||+.|++|+|||+.+.+ .+.++....+|.+|.|-|.....|++++. |-.|+|||++..-+- .+..|..
T Consensus 231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 88 99999999999999998654 45556677899999999966677888764 778999999986543 5888999
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEeC
Q 009614 472 IVSAVCYCP-DGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 472 ~v~~v~~sp-dg~~l~sgs~dg~I~iwd~ 499 (531)
.++.++|.. |-..|.+++.||+|..-.+
T Consensus 311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 311 SVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred cccceeccCCCceeeEeecCccHHHHhhh
Confidence 999999976 5567889999998754433
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=3.4e-20 Score=178.50 Aligned_cols=244 Identities=18% Similarity=0.254 Sum_probs=199.8
Q ss_pred cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (531)
+..+.+|..++..+.++|+...+++++.|..|+||........ ..+..|.++|+.+..+|.|.||++++.||+
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~-------~~~~~h~~~V~~ls~h~tgeYllsAs~d~~ 326 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP-------TSSRPHEEPVTGLSLHPTGEYLLSASNDGT 326 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc-------cccccccccceeeeeccCCcEEEEecCCce
Confidence 3456777778888999999999999999999999998855432 346789999999999999999999999999
Q ss_pred EEEEEcccCccccceecCCCC--CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 308 VRVWKVIEHERLDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
....|+.++..+......... ..+..|.++. .....+..++.+.+|+.+... .+..|.
T Consensus 327 w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----------------Lifgtgt~d~~vkiwdlks~~----~~a~Fp 386 (506)
T KOG0289|consen 327 WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----------------LIFGTGTPDGVVKIWDLKSQT----NVAKFP 386 (506)
T ss_pred EEEEEccCCcEEEEEeeccccceeEEeeEcCCc----------------eEEeccCCCceEEEEEcCCcc----ccccCC
Confidence 999999999877665443222 2333333322 233567888999999987643 477899
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC- 461 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~- 461 (531)
+|.++|..|+|+.+| +|++++.|+.|++||++..+..+++. ....|.++.|.+ .|.+|+.++.|=+|++++-.+.
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEEEEeccccc
Confidence 999999999999999 99999999999999999998888886 334699999999 9999999988877777775543
Q ss_pred -eEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614 462 -QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 462 -~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 499 (531)
+.+ .+..|.+..+.+.|..+.+++++++.|..+++|.+
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 333 57778889999999999999999999999998864
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=3.7e-20 Score=168.22 Aligned_cols=182 Identities=23% Similarity=0.398 Sum_probs=158.5
Q ss_pred EEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccc
Q 009614 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (531)
Q Consensus 279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (531)
.++||..+|+-|+++.+|.+|.+|+.|.++.+|--.+|+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---------------------------------------- 44 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---------------------------------------- 44 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----------------------------------------
Confidence 3789999999999999999999999999999998766553
Q ss_pred ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEe
Q 009614 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437 (531)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fs 437 (531)
+-++.||++.|+|+....+. ++++|+.|.+++|||+.+|+++..+..+.+|..+.|+
T Consensus 45 ----------------------lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 45 ----------------------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFS 102 (327)
T ss_pred ----------------------eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeec
Confidence 56678999999999999888 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCC-----CeEEEEeCCC-------Ce-EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614 438 PVDDNYFISGSID-----GKVRIWEVRR-------CQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (531)
Q Consensus 438 p~d~~~l~sgs~D-----g~I~Iwd~~~-------~~-~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l 504 (531)
+ ++++++....+ +.|.++|++. .. .+.+.-+...++.+-|.|-+++|++|..||.|.+||+++|+.
T Consensus 103 ~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~ 181 (327)
T KOG0643|consen 103 F-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE 181 (327)
T ss_pred c-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce
Confidence 9 88888776543 5799999983 33 445667778999999999999999999999999999999865
Q ss_pred EEEeeeeecccccCCCceeeeEEEee
Q 009614 505 YQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 505 ~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
+-+ ..+.|...|+.+||+|
T Consensus 182 ~v~-------s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 182 LVD-------SDEEHSSKINDLQFSR 200 (327)
T ss_pred eee-------chhhhccccccccccC
Confidence 432 2345667999999986
No 97
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=8e-21 Score=179.93 Aligned_cols=207 Identities=19% Similarity=0.313 Sum_probs=161.4
Q ss_pred eccccceeeeC--CCCeEEeeecCCeEEEEeCCCCcccc---------cccccceEEcccCCCEEEEEEcc-CCCEEEEE
Q 009614 235 IDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSREL---------SSLYTGQEFLAHEGSILTMKFSL-DGQYLASG 302 (531)
Q Consensus 235 ~~~~~s~~fsp--dg~~lasgs~dg~I~vwd~~~~~~~~---------~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasg 302 (531)
++.++-+..++ +..+.|+-+..|+|+||++...-..+ +......++.+|.+.=++|+||| ....|+||
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 33344333333 34455667789999999987543221 23344557889999999999999 22258889
Q ss_pred eCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (531)
Q Consensus 303 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (531)
..-+.|++|...++.-.. . ..
T Consensus 231 Dc~~~I~lw~~~~g~W~v--------------------------------------------------------d---~~ 251 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKV--------------------------------------------------------D---QR 251 (440)
T ss_pred ccccceEeeeeccCceee--------------------------------------------------------c---Cc
Confidence 888999999987754210 0 12
Q ss_pred EeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC---eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID---RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (531)
Q Consensus 383 ~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~---~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd 457 (531)
.+.+|+..|-+|+|+|.. .|++|+-||+|+|||++.+ .++.+-.|+..|+-|.|+. +..+||+|+.||+++|||
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwD 330 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWD 330 (440)
T ss_pred cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEE
Confidence 356799999999999975 9999999999999999988 5566656999999999998 777999999999999999
Q ss_pred CCCCe---EE-EecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 009614 458 VRRCQ---VV-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 458 ~~~~~---~~-~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~ 501 (531)
++..+ ++ .+..|..+|++|.|+|. ...|++++.|..|.|||+.-
T Consensus 331 LR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 331 LRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred hhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99743 33 68899999999999994 46788899999999999863
No 98
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=5e-20 Score=187.90 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=207.5
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 310 (531)
+.+|+..|.+++++.+...+++|+ .+.|+||+..+. .+.+++.. +.+.+..|.|.++++++|...|.+.+
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~-------kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL-------KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCc-------ceeEEecc--ccEEEEEecCCCceEEEeccCCceEE
Confidence 556777788899999988888885 578999998843 33344433 48999999999999999999999999
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc-Cccee-------
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLH------- 382 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------- 382 (531)
+|+.....+..++.|...+..+...++.... ++++.|..+.+|+.....-. +...+
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~----------------vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSPDNKGF----------------VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT 502 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecCCCCce----------------EEecCCcEEEEEeEEEEeccCcccceeeeeccc
Confidence 9999999999999888888888877766443 56677888888876543221 10000
Q ss_pred EeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE-EEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 383 ~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l-~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
..-.-...|.|+.++|+| +|+.+=-|.+|++|-+.+-+.. ..++|.-||.||..+| |++++++||.|.+|+||-+.-
T Consensus 503 rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 503 RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEecccc
Confidence 111235689999999999 9999999999999999987764 4457999999999999 999999999999999999999
Q ss_pred CeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 461 CQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 461 ~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
|.+.+ +.+|.+.|.++.|.|+...+.+++.|+.|+-||-..-+.++...
T Consensus 582 GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~ 631 (888)
T KOG0306|consen 582 GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD 631 (888)
T ss_pred chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence 99985 89999999999999999999999999999999988777776554
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=4.7e-21 Score=177.13 Aligned_cols=207 Identities=19% Similarity=0.373 Sum_probs=170.7
Q ss_pred cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (531)
++++.-|.+.|+.+.|+|....|++|+.|++|+++|+.+..... .+. .+ ....+|.++.|+|.|.+|+.|.+-.+
T Consensus 165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr-A~K---~~-qd~~~vrsiSfHPsGefllvgTdHp~ 239 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR-AFK---VF-QDTEPVRSISFHPSGEFLLVGTDHPT 239 (430)
T ss_pred EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH-HHH---Hh-hccceeeeEeecCCCceEEEecCCCc
Confidence 44667788999999999999999999999999999998644321 111 12 23568999999999999999999999
Q ss_pred EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (531)
+++||+.+-++..... .-..|
T Consensus 240 ~rlYdv~T~Qcfvsan-----------------------------------------------------------Pd~qh 260 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSAN-----------------------------------------------------------PDDQH 260 (430)
T ss_pred eeEEeccceeEeeecC-----------------------------------------------------------ccccc
Confidence 9999998876432110 12458
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--c-CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (531)
Q Consensus 388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h-~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~ 463 (531)
++.|+++.+++.+ +.++++.||.|+|||--+++|+.++. | ...|.+..|.. +++|+++.+.|..|++|.+.++++
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCce
Confidence 9999999999999 99999999999999999999999996 5 46788999998 999999999999999999987663
Q ss_pred EE--------------------------------------------------ecCCCCceEEEEEccCCCEEEEEeCCCc
Q 009614 464 VD--------------------------------------------------YTDIREIVSAVCYCPDGKGGIVGTMTGN 493 (531)
Q Consensus 464 ~~--------------------------------------------------~~~~~~~v~~v~~spdg~~l~sgs~dg~ 493 (531)
+. ..+|++.+..+.-+|.+..+++++.|-.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 31 1346677888888899999999999999
Q ss_pred EEEEeC
Q 009614 494 CRFYDI 499 (531)
Q Consensus 494 I~iwd~ 499 (531)
+++|--
T Consensus 420 aRFWyr 425 (430)
T KOG0640|consen 420 ARFWYR 425 (430)
T ss_pred eeeeee
Confidence 999953
No 100
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=7.9e-20 Score=169.14 Aligned_cols=255 Identities=18% Similarity=0.246 Sum_probs=183.1
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I 308 (531)
.+.|.+.+.++.|.+.|+.+|+|+.|++|+|||..+... +..+....+.|.++|+.|.|.+ -|+.+|+++.|+++
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 345778899999999999999999999999999754332 4556667899999999999965 69999999999999
Q ss_pred EEEEcccCc---------cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc------c
Q 009614 309 RVWKVIEHE---------RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK------V 373 (531)
Q Consensus 309 ~iWd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 373 (531)
.||.-.... ...++......+..+.|.+.+.+ ....+.+.++.+.+|... .
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG--------------LklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG--------------LKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc--------------eEEEEeccCcEEEEEecCCcccccc
Confidence 999853111 11122222333444444444433 333556777788777542 2
Q ss_pred ccccCcc---eeEeecCCCCeeEEEEcCCC----eEEEEeCC-----CcEEEEECCCC--eEEEE--e-ecCCceEEEEE
Q 009614 374 FRLLEKP---LHEFQGHSSEVLDLSWSKNG----FLLSSSAD-----KTVRLWQVGID--RCLRV--F-SHNNYVTSVAF 436 (531)
Q Consensus 374 ~~~~~~~---~~~~~~h~~~I~~l~~sp~~----~l~s~s~D-----g~V~lwdl~~~--~~l~~--~-~h~~~V~sv~f 436 (531)
|.+.... +.....+.....|+.|+|.. +|+.|+.+ +.+.||....+ +.++. + .|..+|+.|+|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 3222111 11222466788999999865 77777766 47888876543 33322 2 39999999999
Q ss_pred eeCCC---CEEEEEeCCCeEEEEeCCCCe--------------------EE-EecCCCCceEEEEEccCCCEEEEEeCCC
Q 009614 437 NPVDD---NYFISGSIDGKVRIWEVRRCQ--------------------VV-DYTDIREIVSAVCYCPDGKGGIVGTMTG 492 (531)
Q Consensus 437 sp~d~---~~l~sgs~Dg~I~Iwd~~~~~--------------------~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg 492 (531)
.|.-| .+||+++.|| |+||.+.... .+ .+.+|...|..+.|.-.|..|++.+.||
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG 310 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG 310 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence 99544 4789999999 9999987311 12 3678999999999999999999999999
Q ss_pred cEEEEeCCCCe
Q 009614 493 NCRFYDIKDNQ 503 (531)
Q Consensus 493 ~I~iwd~~~~~ 503 (531)
.||+|...-..
T Consensus 311 ~VRLWkany~n 321 (361)
T KOG2445|consen 311 CVRLWKANYNN 321 (361)
T ss_pred eeeehhhhhhh
Confidence 99999875433
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=4.4e-20 Score=186.98 Aligned_cols=225 Identities=21% Similarity=0.339 Sum_probs=180.5
Q ss_pred eeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc
Q 009614 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (531)
Q Consensus 241 ~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 319 (531)
+++.+ ++-.+++|+.|+.|.+|...... +...+++|+..|.++....++. |+||+.|.++++|... ++.
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~ 133 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAE-------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELV 133 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCC-------chhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhh
Confidence 56664 55568999999999999887433 3446899999999999988887 9999999999999864 344
Q ss_pred cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~ 399 (531)
..+..|...+..+...+ ....++++.|..+.+|... +.+.+|.+|+.-|..+++-++
T Consensus 134 ~~l~gH~asVWAv~~l~-----------------e~~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 134 YSLQGHTASVWAVASLP-----------------ENTYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred cccCCcchheeeeeecC-----------------CCcEEeccCcceeeeccCC------chhhhhccchhheeeeEEecC
Confidence 44555555544333322 2245789999999999763 457889999999999999999
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC-CCceEEEEE
Q 009614 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-REIVSAVCY 478 (531)
Q Consensus 400 ~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~-~~~v~~v~~ 478 (531)
+.|++|++||.|++|++.....+..+.|...|.++...+ ++..+++++.|++++||+.. .+.....+ ...|+++++
T Consensus 191 ~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 999999999999999995555555557999999999777 78899999999999999988 45543444 448999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 479 CPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 479 spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
-++|. |++|+.||.||||.....
T Consensus 268 L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 268 LLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred eeCCC-EEEeccCceEEEEEeccc
Confidence 99887 788999999999988743
No 102
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3e-19 Score=166.35 Aligned_cols=220 Identities=23% Similarity=0.318 Sum_probs=174.5
Q ss_pred ccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccc
Q 009614 275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (531)
Q Consensus 275 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (531)
...+.+..-.+.|++|.|+++|.+|++++.|.+|+|||..+++..+.+..+...+..+.|.......+.+-.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt-------- 76 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST-------- 76 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--------
Confidence 344456666789999999999999999999999999999999999999988888877777665543333211
Q ss_pred ccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEE
Q 009614 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTS 433 (531)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~s 433 (531)
..+..+...+... .+.++.|.||...|+.|+.+|-+ .+++++.|++|++||++..+|...+.-. .-..
T Consensus 77 ------k~d~tIryLsl~d----NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi 145 (311)
T KOG1446|consen 77 ------KEDDTIRYLSLHD----NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPI 145 (311)
T ss_pred ------CCCCceEEEEeec----CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCcc
Confidence 1122333332222 45688999999999999999988 9999999999999999988887777533 2346
Q ss_pred EEEeeCCCCEEEEEeCCCeEEEEeCCCCe--EE---Eec-CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VV---DYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~--~~---~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~ 507 (531)
++|+| .|-+||++.....|++||++.-. +. .+. ......+.|.|+|||++|+.++..+.+++.|.-+|.++..
T Consensus 146 ~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 146 AAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST 224 (311)
T ss_pred eeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence 78999 99999999888899999998742 11 222 3456789999999999999999999999999999999888
Q ss_pred eeeeecc
Q 009614 508 NQICLQG 514 (531)
Q Consensus 508 ~~~~~~~ 514 (531)
+......
T Consensus 225 fs~~~~~ 231 (311)
T KOG1446|consen 225 FSGYPNA 231 (311)
T ss_pred EeeccCC
Confidence 8765443
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=3.6e-20 Score=187.58 Aligned_cols=246 Identities=21% Similarity=0.267 Sum_probs=196.2
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEE-EEEcc-CCCEEEEEeCCCcE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSL-DGQYLASGGEDGTV 308 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fsp-dg~~Lasgs~Dg~I 308 (531)
+.+|..-+..+++. ++..++++++||++++|+-..... .....+.+|.+-|.. +++-+ ++-.|++|+.|++|
T Consensus 10 l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~-----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQY-----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eccCccchheeEec-CCeEEeecCCCCceeeeeccCccc-----ccceecccCcceeeccceeccccCcceEeecccceE
Confidence 33444444444543 445789999999999998764332 122457788888877 88876 55579999999999
Q ss_pred EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
.+|.+.+...+..+..|+..+.++..... ...++++-|.+..+|.... ....+.+|+
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~-----------------~~~iSgSWD~TakvW~~~~------l~~~l~gH~ 140 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGED-----------------GTLISGSWDSTAKVWRIGE------LVYSLQGHT 140 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCc-----------------CceEecccccceEEecchh------hhcccCCcc
Confidence 99999999888888877776555432211 1146788889999998754 345589999
Q ss_pred CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (531)
Q Consensus 389 ~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~ 467 (531)
..|+.++.-|.+.++|||.|++|++|.- ++++++|. |.+.|..+++-| +..|++++.||.|+.|++....+....
T Consensus 141 asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~ 216 (745)
T KOG0301|consen 141 ASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMH 216 (745)
T ss_pred hheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeee
Confidence 9999999999999999999999999975 78888886 999999999987 457899999999999999666677899
Q ss_pred CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
+|..-|+++...+++..+++++.|++++||+.. .+.+.+.++
T Consensus 217 ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP 258 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP 258 (745)
T ss_pred ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC
Confidence 999999999988888999999999999999986 566665543
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=188.88 Aligned_cols=239 Identities=16% Similarity=0.182 Sum_probs=183.9
Q ss_pred eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
|......++|.|+|.+|.+++.||.|++|+......+.. .+.-|...|.+++.. +.+|++|+.+++|.+|.+
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------TIDISGELVSSIACY--SNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc------hhhccCceeEEEeec--ccceEEeeccceEEEeeC
Confidence 445556799999999999999999999999875432211 222377778877764 558999999999999999
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 393 (531)
.+++.-..+.....+..++.+..+.. ....++.|-.+.+.+... ......+.+|.++|.+
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~----------------~iaagsdD~~vK~~~~~D----~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGK----------------MIAAGSDDTAVKLLNLDD----SSQEKVLRGHDAPVLQ 143 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCc----------------EEEeecCceeEEEEeccc----cchheeecccCCceee
Confidence 88875544444444455555443332 223445555565555443 2346778999999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (531)
Q Consensus 394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~ 463 (531)
|.++|++ +|++.+-||.|++||+.++.+..++. ....+..++|+| ++..|+..+.|+.|++|+..+...
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCcee
Confidence 9999999 99999999999999999998877764 245678899999 777788888999999999999876
Q ss_pred E---EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614 464 V---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 464 ~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~ 501 (531)
. ....+...+..+.|+|+|+|||+++.||.|-|||+++
T Consensus 223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 5 2333445599999999999999999999999999996
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=2.7e-20 Score=188.41 Aligned_cols=247 Identities=19% Similarity=0.257 Sum_probs=192.9
Q ss_pred eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc---CCCEEEEEeCCCcEE
Q 009614 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLASGGEDGTVR 309 (531)
Q Consensus 233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~I~ 309 (531)
..+..+.+++++|+|++||+|..-|+++||++..... .-.+.+|...|.|+.|+. ..++||+|+.|..|+
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH 529 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH 529 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhh-------hhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence 3445667899999999999999999999999884332 224789999999999986 456899999999999
Q ss_pred EEEcccC-ccccceecCCCCCeeEEEeecCCcce-eeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614 310 VWKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQL-IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (531)
Q Consensus 310 iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (531)
|+|+... ..++++..+...+..+.|..+....- +....+ +........+..++.+.. -++-.-.
T Consensus 530 V~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD--ksimFr~~qk~~~g~~f~------------r~t~t~~ 595 (1080)
T KOG1408|consen 530 VYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD--KSIMFRVNQKASSGRLFP------------RHTQTLS 595 (1080)
T ss_pred EEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc--hhhheehhccccCceecc------------ccccccc
Confidence 9999654 45667777777777777766653221 111111 111111112222222211 1111112
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (531)
Q Consensus 388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~ 462 (531)
...+.+|++.|+. ++++++.|+.|+|||+.+++..+.|+ |.+....+...| .+.|+++.+.|.++.++|..+++
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccch
Confidence 4578899999988 99999999999999999999999996 778888999999 99999999999999999999999
Q ss_pred EE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614 463 VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 463 ~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~ 501 (531)
++ ...+|.+.|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 675 cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 675 CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 98 6899999999999999999999999999999999864
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.6e-20 Score=188.84 Aligned_cols=256 Identities=18% Similarity=0.286 Sum_probs=201.0
Q ss_pred cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEE-ccCCCEEEEEeCCC
Q 009614 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF-SLDGQYLASGGEDG 306 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~Dg 306 (531)
...+..|.+-++.+....+++.+++++.|-+|++|+..... ..+..++..|++.|.|+++ .++..++||||-|+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR 140 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCc
Confidence 34566677778888888899999999999999999988543 1344578899999999999 78888999999999
Q ss_pred cEEEEEcccCcc--ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614 307 TVRVWKVIEHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (531)
Q Consensus 307 ~I~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
.|.+||+.++.. +..+..... ......+...++++..+... ...+.++..+.+.+|+++.. +.+..+
T Consensus 141 ~IflWDin~~~~~l~~s~n~~t~----~sl~sG~k~siYSLA~N~t~---t~ivsGgtek~lr~wDprt~----~kimkL 209 (735)
T KOG0308|consen 141 KIFLWDINTGTATLVASFNNVTV----NSLGSGPKDSIYSLAMNQTG---TIIVSGGTEKDLRLWDPRTC----KKIMKL 209 (735)
T ss_pred cEEEEEccCcchhhhhhcccccc----ccCCCCCccceeeeecCCcc---eEEEecCcccceEEeccccc----cceeee
Confidence 999999998843 222221110 01111233333444333322 45577888999999999873 456778
Q ss_pred ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-
Q 009614 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC- 461 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~- 461 (531)
.||+..|.++..+++| .+++++.||+|++||+...+|+.++. |...|+++..+| +-.++++|+.||.|..=|+++.
T Consensus 210 rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 210 RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCch
Confidence 8999999999999999 99999999999999999999999997 999999999999 8999999999999999999984
Q ss_pred eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
+...+.....+|..+..+.+.+-+-+++.|+.|+-|...
T Consensus 289 ~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 289 KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred hheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 344455666677778777666666788888999888765
No 107
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=3.9e-20 Score=170.06 Aligned_cols=213 Identities=20% Similarity=0.309 Sum_probs=156.1
Q ss_pred ceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCccc-ccccc-------cceEEcccCCCEEEEEEcc-CCCEEE
Q 009614 231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRE-LSSLY-------TGQEFLAHEGSILTMKFSL-DGQYLA 300 (531)
Q Consensus 231 ~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~-~~~~~-------~~~~l~~H~~~I~~l~fsp-dg~~La 300 (531)
...|.+.|+++.+.+ .|+++++|+.||.|.|||++..... .+.+. ..+.-.+|+-+|..+.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 445667888888877 5789999999999999999865421 11111 1122347888999999999 666889
Q ss_pred EEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (531)
Q Consensus 301 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (531)
+++.|.+++|||..+.+....+..... +..-.+++- .........+..+..+.+.+... +..
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~-VYshamSp~-------------a~sHcLiA~gtr~~~VrLCDi~S----Gs~ 180 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGK-VYSHAMSPM-------------AMSHCLIAAGTRDVQVRLCDIAS----GSF 180 (397)
T ss_pred cccccceEEEeecccceeeEEeecCce-eehhhcChh-------------hhcceEEEEecCCCcEEEEeccC----Ccc
Confidence 999999999999998877665544322 111122211 11122233445555666666554 345
Q ss_pred eeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEe---------------ecCCceEEEEEeeCCCC
Q 009614 381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVF---------------SHNNYVTSVAFNPVDDN 442 (531)
Q Consensus 381 ~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~---------------~h~~~V~sv~fsp~d~~ 442 (531)
.+++.||.+.|..+.|+|.. .|++|+.||.|++||++.. .|..++ .|.+.|..++|.. ++.
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~ 259 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DAR 259 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cch
Confidence 78899999999999999988 8999999999999999854 333332 2778999999999 999
Q ss_pred EEEEEeCCCeEEEEeCCCCe
Q 009614 443 YFISGSIDGKVRIWEVRRCQ 462 (531)
Q Consensus 443 ~l~sgs~Dg~I~Iwd~~~~~ 462 (531)
++++++.|..+++|+..+++
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred hhhhccCccceEEeecccCc
Confidence 99999999999999998764
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1e-20 Score=175.22 Aligned_cols=244 Identities=18% Similarity=0.342 Sum_probs=182.9
Q ss_pred ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 308 (531)
+.+.+|++.+-.++.......+.+++.|.+-+||.+..+.. ...+.||.+.|++|+|++.+.++++++.|++.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-------LATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-------eeeecccccceeeEEeccccceEEEccCCcch
Confidence 34677888888888888888899999999999999986554 34589999999999999999999999999999
Q ss_pred EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
+||...-.-....-..+..... ....-.-+ . -..........++.. ...|+..+.+|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSs--------EeE~e~sD--e--~~~d~d~~~~sD~~t----------iRvPl~~ltgH~ 272 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSS--------EEEEEHSD--E--HNRDTDSSEKSDGHT----------IRVPLMRLTGHR 272 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCc--------hhhhhccc--c--cccccccccccCCce----------eeeeeeeeeccc
Confidence 9997421110000000000000 00000000 0 000000000011100 134688899999
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC--eEE
Q 009614 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVV 464 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~--~~~ 464 (531)
+.|.+..|...| .+++++.|.+..+||++++..+..+. |....+-++-+| ..+++++.+.|.+.++||.+.. .+-
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~ 351 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVA 351 (481)
T ss_pred cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceee
Confidence 999999999988 99999999999999999999999986 999999999999 8999999999999999999953 233
Q ss_pred EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 465 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
.+.+|.+.|+++.|.-|.+ +++|+.|.+|++||+++.+
T Consensus 352 VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 352 VFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred eecccccceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence 5899999999999998764 8999999999999998644
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=1.3e-20 Score=184.01 Aligned_cols=247 Identities=18% Similarity=0.264 Sum_probs=201.5
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc--ccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~--~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
+.|.+++++...+++.+|++ |-|+|||+...... .+.+. ...-...|.++.+.|||+.|++|++-.++.|||+
T Consensus 420 EvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd----cl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 420 EVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD----CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred cEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccc----ccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 44555889999999999976 88999999865322 11111 2223567999999999999999999999999999
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 393 (531)
.....-...........|..+..+....+ .+....++.+.+|+... ...+..|+||+..+.|
T Consensus 495 AapTprikaeltssapaCyALa~spDakv--------------cFsccsdGnI~vwDLhn----q~~VrqfqGhtDGasc 556 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKV--------------CFSCCSDGNIAVWDLHN----QTLVRQFQGHTDGASC 556 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccce--------------eeeeccCCcEEEEEccc----ceeeecccCCCCCcee
Confidence 77654434444444444544443333222 25667788999999876 3458899999999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCc
Q 009614 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI 472 (531)
Q Consensus 394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~ 472 (531)
|.++++| .|.+|+-|.+||.||++.++.+........|.++-.+| .+.+++.|-.++.|.|......+...+..|..-
T Consensus 557 Idis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheSc 635 (705)
T KOG0639|consen 557 IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESC 635 (705)
T ss_pred EEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccE
Confidence 9999999 99999999999999999999998888899999999999 999999999999999999998888889999999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (531)
Q Consensus 473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~ 506 (531)
|.++.|.+.|+++++.+.|+.+..|.+.-|.-+-
T Consensus 636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred EEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 9999999999999999999999999987665443
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=5.1e-20 Score=180.63 Aligned_cols=219 Identities=18% Similarity=0.308 Sum_probs=164.0
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc-ccc--cc--cceEEcccCCCEEEEEEccCC-CEEEEEeCCCcEE
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSS--LY--TGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVR 309 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~-~~~--~~--~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~ 309 (531)
..++++.|++.|..|++.+.....+|+|-...... +.. .| -...-+||...++|.+|+|+. ..++|++.||++|
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR 294 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR 294 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEE
Confidence 56778999999999999888999999987753321 100 00 012347999999999999954 4789999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
|||+...+....+-. .....+..-
T Consensus 295 iWdv~~~k~q~qVik--------------------------------------------------------~k~~~g~Rv 318 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIK--------------------------------------------------------TKPAGGKRV 318 (641)
T ss_pred EEecCCchhheeEEe--------------------------------------------------------eccCCCccc
Confidence 999976542111100 000123345
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Ee--ecCC--ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VF--SHNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~--~~--~h~~--~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~ 462 (531)
.++..+|++++ .|++|+.||.|.+|+......-. .+ .|.. .|+||.|++ ++++|++-+.|+++++||++..+
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccccc
Confidence 78899999999 99999999999999986543222 22 2766 899999999 99999999999999999999854
Q ss_pred -EE-EecCC--CCceEEEEEccCCCEEEEEeC------CCcEEEEeCCCCeEEEEeeee
Q 009614 463 -VV-DYTDI--REIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 463 -~~-~~~~~--~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~~~~l~~~~~~~ 511 (531)
++ .+.+. .-+-+.+||+|+.++|++|+. .|++.+||..+-..++++.+.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 33 23333 335678999999999999875 578999999988888876653
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.6e-20 Score=187.12 Aligned_cols=299 Identities=15% Similarity=0.158 Sum_probs=200.4
Q ss_pred ccccCCCCcccccccccCCCCCccccccCCccccccchhhHHhhhhhcccccccccc-----ceeeeccccceeeeCCCC
Q 009614 174 LQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGA-----MARIIDRHGSATLKPGDH 248 (531)
Q Consensus 174 lr~v~~~~~~~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~k~~~~~w~~~~~~-----~~~~~~~~~s~~fspdg~ 248 (531)
||.|......--+.|+||+.+ ++.+..++.........-.++..++.-++++.+ +.+|.+.+.+++..|.|.
T Consensus 337 LR~VPaY~r~irErFeRcLDL---YL~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~ 413 (733)
T KOG0650|consen 337 LRKVPAYERSIRERFERCLDL---YLAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGE 413 (733)
T ss_pred hhcchhHHHHHHHHHHHhHHh---hhCcccccceecCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcc
Confidence 999999888889999999984 233334443333332222355566666676664 788889999999999999
Q ss_pred eEEeeecCCeEEEEeCCCCccccccccc----------------------------------------------------
Q 009614 249 ELTLGQRMRRVRVHPVKKQSRELSSLYT---------------------------------------------------- 276 (531)
Q Consensus 249 ~lasgs~dg~I~vwd~~~~~~~~~~~~~---------------------------------------------------- 276 (531)
+||+|+.||+|+||.+.++........-
T Consensus 414 wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~ 493 (733)
T KOG0650|consen 414 WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNES 493 (733)
T ss_pred eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCcc
Confidence 9999999999999998865532110000
Q ss_pred ----------------c----eEEcccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcccCccccceecCCCCCeeEE
Q 009614 277 ----------------G----QEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (531)
Q Consensus 277 ----------------~----~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 333 (531)
. .....|...|..|.|+..|.||++... ...|.|.++........+....+.+.++.
T Consensus 494 ~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~ 573 (733)
T KOG0650|consen 494 EPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVK 573 (733)
T ss_pred CCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEE
Confidence 0 011234455555555555555555433 23455555554444433433344444444
Q ss_pred EeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEE
Q 009614 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVR 412 (531)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~ 412 (531)
|.+.....+++. ...+.+|+... ...++.+......|..|+++|.| .|+.|+.|+.+.
T Consensus 574 FHPs~p~lfVaT-----------------q~~vRiYdL~k----qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 574 FHPSKPYLFVAT-----------------QRSVRIYDLSK----QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred ecCCCceEEEEe-----------------ccceEEEehhH----HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeE
Confidence 444333322221 12233443322 12244555567789999999999 999999999999
Q ss_pred EEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC------C-CeEE---EecCCCCc----eEEE
Q 009614 413 LWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR------R-CQVV---DYTDIREI----VSAV 476 (531)
Q Consensus 413 lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~------~-~~~~---~~~~~~~~----v~~v 476 (531)
.+|+.-. ++.+++. |...+++|+||+ .-.+|++|+.||++.|+.-. . ..++ .+.+|... |..+
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~ 711 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT 711 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence 9999744 5556665 899999999999 88999999999999998532 2 2222 35566544 8999
Q ss_pred EEccCCCEEEEEeCCCcEEEE
Q 009614 477 CYCPDGKGGIVGTMTGNCRFY 497 (531)
Q Consensus 477 ~~spdg~~l~sgs~dg~I~iw 497 (531)
+|+|...+|++++.||+|++|
T Consensus 712 ~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 712 IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccCCCceEEecCCCceEEee
Confidence 999999999999999999998
No 112
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=1.1e-19 Score=176.41 Aligned_cols=244 Identities=17% Similarity=0.204 Sum_probs=174.4
Q ss_pred ccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccccc
Q 009614 282 AHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (531)
Q Consensus 282 ~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (531)
-|.+.|+.+...|+. ..+|+++..+.|.|||..+............+...+..... .-. ...-........+++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~---eg~--glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK---EGY--GLSWNRQQEGTLLSG 196 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc---ccc--ccccccccceeEeec
Confidence 489999999999955 46777888999999998654432221110000001111110 000 111112234456788
Q ss_pred CCCceEEEeCCcccccc---CcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC--CeEEEEe-ecCCceE
Q 009614 361 SSDLTCVVLPPKVFRLL---EKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--DRCLRVF-SHNNYVT 432 (531)
Q Consensus 361 ~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~--~~~l~~~-~h~~~V~ 432 (531)
+.+..+.+|+....... ..+...+.+|...|.+++|++.. +|++++.|+.+.|||+++ .++.+.. .|...|+
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 99999999999877663 45678899999999999999976 999999999999999995 3443333 4999999
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEeCCCC--eEEEecCCCCceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEe-
Q 009614 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQN- 508 (531)
Q Consensus 433 sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~--~~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~~~~- 508 (531)
|++|+|.++.+||+|+.|++|++||+|+. .+..+.+|...|..|.|+|+. ..|++++.|+.+.+||+..-...+..
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 99999999999999999999999999985 345799999999999999965 57888999999999999642222210
Q ss_pred -----eeeecccccCCCceeeeEEEee
Q 009614 509 -----QICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 509 -----~~~~~~~kk~~~~~It~l~f~p 530 (531)
+..+.--...|..+|..|.|+|
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp 383 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNP 383 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCC
Confidence 1111111223456788888876
No 113
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=3.1e-19 Score=184.21 Aligned_cols=281 Identities=17% Similarity=0.236 Sum_probs=206.2
Q ss_pred eccccceeeeCCCCe-EEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 235 IDRHGSATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 235 ~~~~~s~~fspdg~~-lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
.++|.+++|..||+. +|+|...|.+.+||+.+.+... +...+|.++|....|.|....|++++.|..+++|=.
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~------v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN------VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee------eeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 367888999999975 5678888999999999655432 234579999999999999999999999999999966
Q ss_pred ccCc----cccceecCCCCCeeEEEeecCCcceeeeeccccc-------------------------c------------
Q 009614 314 IEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK-------------------------I------------ 352 (531)
Q Consensus 314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~------------ 352 (531)
.++. .++.-..|..++.|+.+.......+.....+... .
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 5432 3333345666666666543332222221111100 0
Q ss_pred -------------ccccccccCCCceEEEeCCcc-------------------------------------------ccc
Q 009614 353 -------------DKTKSLRKSSDLTCVVLPPKV-------------------------------------------FRL 376 (531)
Q Consensus 353 -------------~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~ 376 (531)
........-.+..+..|+.+. +++
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 000000011111222222111 111
Q ss_pred cC-cceeEe---ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC
Q 009614 377 LE-KPLHEF---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451 (531)
Q Consensus 377 ~~-~~~~~~---~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg 451 (531)
.. -....+ ..|.++|+.++...-+ .+++++.+|.+++||..+...+..+.-...++++..+. ....++.+..|-
T Consensus 478 QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr-~s~l~a~~~ddf 556 (910)
T KOG1539|consen 478 QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR-VSDLLAIALDDF 556 (910)
T ss_pred ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee-hhhhhhhhcCce
Confidence 11 112233 4689999999998877 89999999999999999999999998888999999998 788999999999
Q ss_pred eEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 452 KVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 452 ~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
.|+++|+.+.+++. +.+|.+.|++++|||||++|++++.|++|++||+.++.++.-+.+. ..++++.|+|
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls~SP 627 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLSFSP 627 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeEECC
Confidence 99999999999885 8889999999999999999999999999999999999999877654 5778888887
Q ss_pred C
Q 009614 531 I 531 (531)
Q Consensus 531 ~ 531 (531)
.
T Consensus 628 n 628 (910)
T KOG1539|consen 628 N 628 (910)
T ss_pred C
Confidence 3
No 114
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=9.2e-20 Score=172.78 Aligned_cols=210 Identities=18% Similarity=0.309 Sum_probs=161.9
Q ss_pred ccccccccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEE
Q 009614 223 GWLKKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLA 300 (531)
Q Consensus 223 ~w~~~~~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~La 300 (531)
.-.+++.++.+|...-..++|+|-. ..+++|..-+.|++|...++...+.. +.+.+|+.+|-.|+|||. ...||
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~----~Pf~gH~~SVEDLqWSptE~~vfa 274 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ----RPFTGHTKSVEDLQWSPTEDGVFA 274 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC----ccccccccchhhhccCCccCceEE
Confidence 3445566677777777789999933 34788988999999999876544332 246789999999999994 55899
Q ss_pred EEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (531)
Q Consensus 301 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (531)
||+.||+|+|||++.+....
T Consensus 275 ScS~DgsIrIWDiRs~~~~~------------------------------------------------------------ 294 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKKA------------------------------------------------------------ 294 (440)
T ss_pred eeecCceEEEEEecCCCccc------------------------------------------------------------
Confidence 99999999999998764211
Q ss_pred eeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC---CeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (531)
Q Consensus 381 ~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~---~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I 455 (531)
....+.|.+.|+.|.|+..- +|++|+.||+++|||++. ++++..|. |..+|++|.|+|.+...|++++.|.+|.|
T Consensus 295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 11236799999999999887 899999999999999984 66778886 99999999999988889999999999999
Q ss_pred EeCCCCe-------------------EEEecCCCCceEEEEEccCC-CEEEEEeCCCcEEEE
Q 009614 456 WEVRRCQ-------------------VVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFY 497 (531)
Q Consensus 456 wd~~~~~-------------------~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iw 497 (531)
||+.... ++-.......+-.+.|++.- -+|++.+.||. .||
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 9986321 11111123456778899854 46777777884 444
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=167.34 Aligned_cols=211 Identities=19% Similarity=0.353 Sum_probs=154.2
Q ss_pred eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc----ccceecCCCCCeeEEEeecCCcceeeeeccccccc
Q 009614 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER----LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (531)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (531)
..+++|.+.|++|+|+.||++|||++.|++|+||++..-.. ..........+..+.|.++-...++.+.... .+.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~-~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN-KLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC-EEE
Confidence 36899999999999999999999999999999999875322 1122333446677777777766665554222 111
Q ss_pred cccccc---cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeec-C
Q 009614 354 KTKSLR---KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH-N 428 (531)
Q Consensus 354 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h-~ 428 (531)
...... ++.....+-|+. ..--..|.-.|..+-...++ +|++++.|..|.||+++ |+.+..+.. .
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred EEEeeecccCCCCcccccccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 111111 111111112221 11123467777788777777 99999999999999998 888888863 3
Q ss_pred CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC---C------eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR---C------QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 429 ~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~---~------~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 499 (531)
..-+..+.+| +|+++++++.---|++|.+-- | ++..+.+|...|+++||+|+...+++.+.||+++|||+
T Consensus 229 ~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 4456678999 999999999999999998732 2 24468999999999999999999999999999999998
Q ss_pred C
Q 009614 500 K 500 (531)
Q Consensus 500 ~ 500 (531)
.
T Consensus 308 d 308 (420)
T KOG2096|consen 308 D 308 (420)
T ss_pred c
Confidence 6
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=9.9e-20 Score=168.77 Aligned_cols=255 Identities=14% Similarity=0.169 Sum_probs=202.7
Q ss_pred cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCC------CCcc--------cc---------------cc----c
Q 009614 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVK------KQSR--------EL---------------SS----L 274 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~------~~~~--------~~---------------~~----~ 274 (531)
+..+++|.+.++++.|++.+.++++++.|++-.||... .... +. +. .
T Consensus 183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR 262 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR 262 (481)
T ss_pred eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence 44688899999999999999999999999999999732 1100 00 00 0
Q ss_pred ccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccc
Q 009614 275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (531)
Q Consensus 275 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (531)
.+...+.+|.+.|.+..|-..|+.+++++.|.+..+||+.+++.+..+..+......+...+..
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ---------------- 326 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ---------------- 326 (481)
T ss_pred eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc----------------
Confidence 1123478999999999999999999999999999999999999988887776654433222211
Q ss_pred ccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCC-eEEEEeecCCceEE
Q 009614 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTS 433 (531)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~-~~l~~~~h~~~V~s 433 (531)
...++.+.+....+|+.+. .-..+..|+||+..|+++.|..+..+++|+.|.+|++||+++. .++.++....+++.
T Consensus 327 rLVvTsSrDtTFRLWDFRe---aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NR 403 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFRE---AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANR 403 (481)
T ss_pred eEEEEeccCceeEeccchh---hcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccce
Confidence 2224566777888888662 2345788999999999999999889999999999999999864 57888889999999
Q ss_pred EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-----ecCCCCceEEEEEccCC--CEEEEEeCCCcEEEEeCCCC
Q 009614 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-----YTDIREIVSAVCYCPDG--KGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-----~~~~~~~v~~v~~spdg--~~l~sgs~dg~I~iwd~~~~ 502 (531)
++.+. .+.+|+.--.+..|++||+...++.. ..+|...|++++|..+. .-|++++-|..+.-|.+...
T Consensus 404 vavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 404 VAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99998 77788888888999999999877653 56788999999998654 34788888999999988754
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=2.8e-19 Score=173.43 Aligned_cols=257 Identities=17% Similarity=0.234 Sum_probs=181.0
Q ss_pred cceeeeccccceeeeCCCC--eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCC
Q 009614 230 AMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG 306 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~--~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg 306 (531)
.++-+..++.+++|+|... ++|+|.+-|+|-+||+.......... ..+..|.++|.+|.|+| +...+++.+.||
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCc
Confidence 3555667888999999775 78999999999999997444333222 24678999999999999 556899999999
Q ss_pred cEEEEEcccCccccceecCCCCCee--EEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSC--LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
+|++-|+.++..-..+......... +.+....... +.+..-+...+|+.++-. .....+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~v----------------l~~~~~G~f~~iD~R~~~---s~~~~~ 318 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSV----------------LFGDNVGNFNVIDLRTDG---SEYENL 318 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccE----------------EEeecccceEEEEeecCC---ccchhh
Confidence 9999999876543333222111111 1111111111 111112234444444322 224445
Q ss_pred ecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe-----EEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614 385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~-----~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd 457 (531)
.-|...|..|+++|.. +|+|++.|++++|||++.-. .+.++.|...|.+..|+|.++ .|++.+.|..|+|||
T Consensus 319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVFD 397 (498)
T ss_pred hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC-ceEeeccCCceEEee
Confidence 6688899999999987 99999999999999998532 366677999999999999544 599999999999999
Q ss_pred CC----CCeEEEecCCC------CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 458 VR----RCQVVDYTDIR------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 458 ~~----~~~~~~~~~~~------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
.. .-.+.....|. -......|.|+..++++|-.-..|-|||-..++.+.++.
T Consensus 398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~ 459 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH 459 (498)
T ss_pred cccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc
Confidence 84 22222222222 134567899999999999999999999999999776643
No 118
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-19 Score=177.24 Aligned_cols=215 Identities=16% Similarity=0.246 Sum_probs=176.1
Q ss_pred ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc
Q 009614 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (531)
Q Consensus 240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 319 (531)
|++......++++|+..+.|+|||++. ....+.+++|+..|++|.++-...|||+++..|-|.|..+.++...
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-------kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRA-------KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHH-------HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 444445558999999999999999982 2234468899999999999999999999999999999999887643
Q ss_pred cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~ 399 (531)
..+... ....|.-+.++|.
T Consensus 157 t~f~~~-------------------------------------------------------------sgqsvRll~ys~s 175 (673)
T KOG4378|consen 157 TTFTID-------------------------------------------------------------SGQSVRLLRYSPS 175 (673)
T ss_pred cceecC-------------------------------------------------------------CCCeEEEeecccc
Confidence 333211 1223457788887
Q ss_pred C--eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEE
Q 009614 400 G--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475 (531)
Q Consensus 400 ~--~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~ 475 (531)
. +|.+++.+|.|.+||+....++..+. |..+...|+|+|.+..+|++.+.|.+|.+||++..+.........+.++
T Consensus 176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plst 255 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLST 255 (673)
T ss_pred cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcce
Confidence 6 88899999999999999988888775 9999999999998899999999999999999998888877777889999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCeE-EEEeeeeecccccCCCceeeeEEEee
Q 009614 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 476 v~~spdg~~l~sgs~dg~I~iwd~~~~~l-~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
++|.++|.+|+.|...|.|..||++..+. +.. ...+...||.|+|.|
T Consensus 256 vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v--------~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV--------RSAHDASVTRVAFQP 303 (673)
T ss_pred eeecCCceEEEeecCCceEEEEecccCCCCceE--------eeecccceeEEEeee
Confidence 99999999999999999999999986543 221 123335588888876
No 119
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=7.3e-20 Score=175.11 Aligned_cols=170 Identities=26% Similarity=0.448 Sum_probs=149.7
Q ss_pred cccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccc
Q 009614 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (531)
Q Consensus 274 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (531)
.+..+.+..|+..|+-+.||++|+|||||+.|.+..||++.....
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----------------------------------- 258 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----------------------------------- 258 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----------------------------------
Confidence 344567889999999999999999999999999999999743321
Q ss_pred cccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC--Cc
Q 009614 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NY 430 (531)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~--~~ 430 (531)
-+..+++.+|..+|.-+.|+|+. +|++|+.|..+++||+.+|.+...+.+. ..
T Consensus 259 ------------------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S 314 (519)
T KOG0293|consen 259 ------------------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFS 314 (519)
T ss_pred ------------------------eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCC
Confidence 02367788999999999999999 9999999999999999999999998754 88
Q ss_pred eEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 431 V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
+.+++|.| |+..|++|+.|+.|..||+.....-.|.+.. ..|.+++.++||+++++.+.|..|++|+..+..
T Consensus 315 ~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 315 VSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred cceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 99999999 9999999999999999999987766776665 469999999999999999999999999987643
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.8e-19 Score=164.34 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=181.9
Q ss_pred cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (531)
Q Consensus 239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 318 (531)
.|+.|++.|.+||+|..+|.|.|||+.+. ...+.+.+|..+|++++||+||+.|+|++.|..|.+||+..|.+
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTF-------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEcccc-------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence 35889999999999999999999999843 35567899999999999999999999999999999999999998
Q ss_pred ccceecCCCCCeeEEEeecCCcceeeeeccccc-------------------------------cccccccccCCCceEE
Q 009614 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK-------------------------------IDKTKSLRKSSDLTCV 367 (531)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 367 (531)
++.+.... ++....+.+...+..++..+.... ....+.+.++..+.+.
T Consensus 100 l~rirf~s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 100 LKRIRFDS-PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred eeEEEccC-ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 77766533 233333333333332222111100 0122345667777777
Q ss_pred EeCCccccccCcceeEeecCC-CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-------eEE--EEee---cCCceEE
Q 009614 368 VLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-------RCL--RVFS---HNNYVTS 433 (531)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~-------~~l--~~~~---h~~~V~s 433 (531)
+++..+.. .+..++-.. ..|..|.++..| .|+.-+.|..||.|+++.- .+- +.+. ...+-.+
T Consensus 179 v~~a~t~e----~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 179 VYDAETLE----CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred EEecchhe----eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 77766653 344444444 678899999999 9999999999999998621 111 1111 2345578
Q ss_pred EEEeeCCCCEEEEEeC-CCeEEEEeCCCCeEEE-ecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 434 VAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVD-YTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 434 v~fsp~d~~~l~sgs~-Dg~I~Iwd~~~~~~~~-~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
++|+. ++.|+++|+. -..++||....|.+++ +.+.. .....+.|+|-...+++- ..|.++||...
T Consensus 255 ccfs~-dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 255 CCFSG-DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eeecC-CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 89998 8999888774 4579999999999997 55555 567889999998877777 68999999864
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=5.9e-20 Score=188.10 Aligned_cols=209 Identities=18% Similarity=0.314 Sum_probs=165.6
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcc---cCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA---HEGSILTMKFSL-DGQYLASGGEDGTVRVW 311 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~---H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iW 311 (531)
...++++..++-..++.+++ ..++||.+........ +...++. -.-.+..|+|.. +.++|||++..|.|.+|
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~---~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEK---CNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcc---eeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 34456788888888888765 5678887764433221 1111111 113466788876 67799999999999999
Q ss_pred EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (531)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 391 (531)
|+..... ++.+..|..|...+
T Consensus 116 dlnk~~r-----------------------------------------------------------nk~l~~f~EH~Rs~ 136 (839)
T KOG0269|consen 116 DLNKSIR-----------------------------------------------------------NKLLTVFNEHERSA 136 (839)
T ss_pred ecCcccc-----------------------------------------------------------chhhhHhhhhccce
Confidence 9854210 12345577899999
Q ss_pred eEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE--EEe
Q 009614 392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDY 466 (531)
Q Consensus 392 ~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~--~~~ 466 (531)
+++.|++.. +|++|+.||+|++||++......++. ....|..|+|+|..+++|+++...|.+++||++.... .++
T Consensus 137 ~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~ 216 (839)
T KOG0269|consen 137 NKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL 216 (839)
T ss_pred eeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh
Confidence 999999976 99999999999999999988887775 6678999999998899999999999999999998653 368
Q ss_pred cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~ 507 (531)
..|.++|.++.|+|++.+||+|+.|+.|+|||+.+++....
T Consensus 217 ~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 217 TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK 257 (839)
T ss_pred hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce
Confidence 99999999999999999999999999999999987665443
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=9.5e-18 Score=165.94 Aligned_cols=254 Identities=13% Similarity=0.156 Sum_probs=171.1
Q ss_pred ccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEccc
Q 009614 238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE 315 (531)
Q Consensus 238 ~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~iWd~~~ 315 (531)
+..++|+|++..+ +++..++.|++|+....... ..+..|. .+..+.|+|+++.|+++ +.|+.|++||+.+
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 4468999999976 56778999999998754321 1233333 35678999999977654 5689999999988
Q ss_pred CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 395 (531)
.+.+..+... ..+..+.+.++.. .+.... .....+..|+...... ..... ....+..++
T Consensus 105 ~~~~~~~~~~-~~~~~~~~~~dg~--~l~~~~-------------~~~~~~~~~d~~~~~~----~~~~~-~~~~~~~~~ 163 (300)
T TIGR03866 105 RKVLAEIPVG-VEPEGMAVSPDGK--IVVNTS-------------ETTNMAHFIDTKTYEI----VDNVL-VDQRPRFAE 163 (300)
T ss_pred CeEEeEeeCC-CCcceEEECCCCC--EEEEEe-------------cCCCeEEEEeCCCCeE----EEEEE-cCCCccEEE
Confidence 7766555422 1233444443332 111111 1111233344332211 11111 223457899
Q ss_pred EcCCC-eEE-EEeCCCcEEEEECCCCeEEEEeecC------C--ceEEEEEeeCCCCEEEE-EeCCCeEEEEeCCCCeEE
Q 009614 396 WSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFSHN------N--YVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 396 ~sp~~-~l~-s~s~Dg~V~lwdl~~~~~l~~~~h~------~--~V~sv~fsp~d~~~l~s-gs~Dg~I~Iwd~~~~~~~ 464 (531)
|+|++ +|+ ++..++.|++||+.+++.+..+... . ....++|+| +++++++ .+.++.|.+||+.+++++
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 99999 554 5556999999999999887766411 1 235688999 8887544 455678999999998887
Q ss_pred EecCCCCceEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 465 DYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 465 ~~~~~~~~v~~v~~spdg~~l~sg-s~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
....+...+.+++|+|+|++|+++ ..+|.|++||+.+++++..+++. +..++|+|+|
T Consensus 243 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~---------~~~~~~~~~~ 300 (300)
T TIGR03866 243 DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG---------RLPWGVVVRP 300 (300)
T ss_pred EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc---------cccceeEeCC
Confidence 654556689999999999999886 46899999999999998887642 3447887765
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.1e-20 Score=192.05 Aligned_cols=193 Identities=23% Similarity=0.428 Sum_probs=172.8
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
.+.+|...+.++.|++...+|++|+.+|+|++||+.... ..+++.||...+..|.|+|-+.|.|+|+.|+-++
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLK 137 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-------hhhhhhccccCcceeeeccceEEeccccccccce
Confidence 378899999999999999999999999999999998433 3346889999999999999999999999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
+||++...+ .+.+.+|..
T Consensus 138 iwD~Rk~Gc--------------------------------------------------------------~~~~~s~~~ 155 (825)
T KOG0267|consen 138 IWDIRKKGC--------------------------------------------------------------SHTYKSHTR 155 (825)
T ss_pred ehhhhccCc--------------------------------------------------------------eeeecCCcc
Confidence 999864432 456778999
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-e
Q 009614 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y 466 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~ 466 (531)
.+..+.|+|+| ++++++.|.+++|||+..|+.+..|. |...+.++.|+| ..-++++|+.|++|++||+++.+++. .
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeecc
Confidence 99999999999 99999999999999999999999998 999999999999 88899999999999999999988884 4
Q ss_pred cCCCCceEEEEEccCCCEEEEEeCCC
Q 009614 467 TDIREIVSAVCYCPDGKGGIVGTMTG 492 (531)
Q Consensus 467 ~~~~~~v~~v~~spdg~~l~sgs~dg 492 (531)
......|.+..|+|++..+++|....
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCccCCceeeeecCCceeeecCchhh
Confidence 44577899999999999888887654
No 124
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=162.23 Aligned_cols=249 Identities=14% Similarity=0.169 Sum_probs=175.7
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc----------ccc----------------------cccc
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE----------LSS----------------------LYTG 277 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~----------~~~----------------------~~~~ 277 (531)
.+.+|.+.+.+++|+.||+.||+++.|+.|+||++++.... +.. ++..
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 47889999999999999999999999999999998753211 000 0000
Q ss_pred e--------------------EEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeec
Q 009614 278 Q--------------------EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337 (531)
Q Consensus 278 ~--------------------~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (531)
. --+.|+-.|..+-...++.+|++++.|..|.+|++. |+.+..+............+|+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 0 011244455555566677899999999999999997 8888887776665555555555
Q ss_pred CCcceeeeeccccccccccccccCCCceEEEeCCc----cccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEE
Q 009614 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK----VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVR 412 (531)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~ 412 (531)
..-.. +..+.. .+.+|.+- ..-..-..+..++||...|+.++|+|+. .+++.+.||+++
T Consensus 240 GRFia-~~gFTp---------------DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 240 GRFIA-VSGFTP---------------DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR 303 (420)
T ss_pred CcEEE-EecCCC---------------CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence 43221 111211 12223221 0001123467789999999999999999 999999999999
Q ss_pred EEECCC-------CeEEEEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEE
Q 009614 413 LWQVGI-------DRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCY 478 (531)
Q Consensus 413 lwdl~~-------~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~ 478 (531)
|||+.- .+.++.+. ..+....+..+| .++.|+.+. ...+++|..++++... -..|...|++|+|
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~ 381 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISY 381 (420)
T ss_pred EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEe
Confidence 999852 22333331 223334899999 888887754 4689999999988774 4568889999999
Q ss_pred ccCCCEEEEEeCCCcEEEEe
Q 009614 479 CPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 479 spdg~~l~sgs~dg~I~iwd 498 (531)
+++|+++++++ |..++++.
T Consensus 382 ~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 382 SSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cCCCcEEeeec-ceeeeeec
Confidence 99999999998 67788876
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=168.86 Aligned_cols=266 Identities=17% Similarity=0.249 Sum_probs=197.1
Q ss_pred eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEc
Q 009614 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKV 313 (531)
Q Consensus 235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~ 313 (531)
...+.++.|||..+++++++.|++++||.+...... ..+.+.--..+|.+..|.|+|. .+++++.-..++.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----hheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 356678999999999999999999999999865443 2334545577999999999999 8999999999999999
Q ss_pred ccCccccceecCCC-CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614 314 IEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (531)
Q Consensus 314 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 392 (531)
.+.+..+--..... ....-.|...+.+..+++ .+..+.+.+....+..+ +..++ -.+.|.
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~--------------~G~~G~I~lLhakT~el----i~s~K-ieG~v~ 348 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAI--------------AGNNGHIHLLHAKTKEL----ITSFK-IEGVVS 348 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEE--------------cccCceEEeehhhhhhh----hheee-eccEEe
Confidence 88764332211111 112223333333333322 23334444444333222 22222 357899
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCce--EEEEEeeCCCCEEEEEeCCCeEEEEeCCCC------eE
Q 009614 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRC------QV 463 (531)
Q Consensus 393 ~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V--~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~------~~ 463 (531)
.++|+.++ .|++++.+|.|.+||++...+++.|...+.| +++|.++ ++.|||+|+..|.|.|||..+. ++
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCc
Confidence 99999999 8888899999999999999999999866555 6677778 8999999999999999997653 33
Q ss_pred E-EecCCCCceEEEEEccCCCEEEEEeC--CCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 464 V-DYTDIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 464 ~-~~~~~~~~v~~v~~spdg~~l~sgs~--dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
+ .+......|+++.|+||+++|+.++. +..+++-.+.+......++.. ..+...+|.++|+|
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-----n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-----NTKVGHVTCMAFSP 492 (514)
T ss_pred hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-----CCcccceEEEEecC
Confidence 4 35566778999999999999988775 677999999998888777643 34457999999998
No 126
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.6e-19 Score=172.12 Aligned_cols=241 Identities=17% Similarity=0.203 Sum_probs=186.1
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccc--------------eEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEE
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--------------QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRV 310 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~--------------~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~i 310 (531)
-|+++|.|+.+..|.|||+.-....+..+..+ ..-.+|+.+|..|+|+.+ .+.|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46799999999999999997544332222111 123479999999999885 458999999999999
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
||+.++++...+..+...+.++.|.+.... .++.++.++.+.+.+.+...... ..-.-.+.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~---------------~LLsGs~D~~V~l~D~R~~~~s~----~~wk~~g~ 331 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPS---------------VLLSGSYDGTVALKDCRDPSNSG----KEWKFDGE 331 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCce---------------EEEeccccceEEeeeccCccccC----ceEEeccc
Confidence 999999999999988899999988776643 34677888888888877522111 11123578
Q ss_pred eeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (531)
Q Consensus 391 I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~ 466 (531)
|-.++|.|.. .++++..||+|+-+|++.. +++.++. |.+.|.+|++++....++++++.|+.|++|++..-..-..
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 9999999987 8889999999999999975 7888876 9999999999998889999999999999999876443222
Q ss_pred cCCC---CceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEE
Q 009614 467 TDIR---EIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 467 ~~~~---~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~ 505 (531)
..|. +...+.++.|+- -.++.|+..+.++|||+.++..+
T Consensus 412 ~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 412 KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 2221 225566666754 45788888899999999887654
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.6e-18 Score=158.50 Aligned_cols=222 Identities=19% Similarity=0.280 Sum_probs=177.6
Q ss_pred eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (531)
Q Consensus 235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 314 (531)
.+.++++.|+|.+..|++++.||.+++|+.......+ .-.|..++.+++|.+ ...+++|+-||.|+.+|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--------~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--------KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--------heecCCceeeeeccC-CceEEEeccCceEEEEEec
Confidence 4678889999999999999999999999998653211 234899999999987 4578999999999999998
Q ss_pred cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (531)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 394 (531)
++.. ..+..|..+|.||
T Consensus 84 ~~~~---------------------------------------------------------------~~igth~~~i~ci 100 (323)
T KOG1036|consen 84 TGNE---------------------------------------------------------------DQIGTHDEGIRCI 100 (323)
T ss_pred CCcc---------------------------------------------------------------eeeccCCCceEEE
Confidence 7652 2345689999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE---ecCCC
Q 009614 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDIR 470 (531)
Q Consensus 395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~---~~~~~ 470 (531)
..++-. .+++|+.|++|++||.+...+...+.....|.|+.. .++.|++|+.|.+|.+||+++..... -...+
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence 999855 999999999999999999888888887789999987 56899999999999999999876542 44556
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE----EEeeeeecccc-cCCCceeeeEEEeeC
Q 009614 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY----QQNQICLQGKK-KLPGKRITGFQVVKI 531 (531)
Q Consensus 471 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~----~~~~~~~~~~k-k~~~~~It~l~f~p~ 531 (531)
-.+.+|++-|++...++++.||.|.+=.+...+.. ..++.+....+ ....-+|.+|+|+|+
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 67899999999999999999999888766655222 23333322222 234568899999985
No 128
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=157.99 Aligned_cols=233 Identities=17% Similarity=0.236 Sum_probs=168.7
Q ss_pred eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccce--ecCCCCCeeEEEeecCCcceeeeeccccccc--
Q 009614 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKID-- 353 (531)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 353 (531)
+++++|.+.|.+|+|+.+|..|++|+.|+++.+|++......... ..+...+..+.+.+.+...++....+.....
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 467899999999999999999999999999999999877655443 3444445556666666555554433322110
Q ss_pred -----cccccccCCCceEEEeCCccccc--------------cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEE
Q 009614 354 -----KTKSLRKSSDLTCVVLPPKVFRL--------------LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRL 413 (531)
Q Consensus 354 -----~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~l 413 (531)
....+........+.|.+..... ....+..-......+.-++|+.++ +++....-|+|.|
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 00011111122222222211000 000111112234567888998776 6666666799999
Q ss_pred EECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCC
Q 009614 414 WQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMT 491 (531)
Q Consensus 414 wdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~d 491 (531)
.....-+++..+. |+....||.|+| +|+|||+|+.|..+.+||+...-++. +..+.-+|..+.|+.||++||+|+.|
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred EeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence 9999988888886 999999999999 99999999999999999999877664 67788899999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEeeee
Q 009614 492 GNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 492 g~I~iwd~~~~~l~~~~~~~ 511 (531)
..|-|=++++|..+.+++..
T Consensus 253 h~IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIPCE 272 (313)
T ss_pred ceEEeEecccCCeEEEeecc
Confidence 99999999999999887743
No 129
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.7e-19 Score=190.90 Aligned_cols=248 Identities=18% Similarity=0.304 Sum_probs=187.8
Q ss_pred ccccceeeeCCCCe----EEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEE
Q 009614 236 DRHGSATLKPGDHE----LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRV 310 (531)
Q Consensus 236 ~~~~s~~fspdg~~----lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~i 310 (531)
.+.+.++|.+.|.. ||.|..||.|.+|+....... ...........|++.|.++.|++. +++||+|+.||.|.|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccC-cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 34455778777766 888999999999998864111 112223356789999999999995 459999999999999
Q ss_pred EEcccCccccceec--CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 311 WKVIEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 311 Wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
||+.+.+....... ....+.++.|... ......+++.++.+.+||.+.- +++..+..|.
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrk---------------vqhILAS~s~sg~~~iWDlr~~----~pii~ls~~~ 204 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRK---------------VSHILASGSPSGRAVIWDLRKK----KPIIKLSDTP 204 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchh---------------hhHHhhccCCCCCceeccccCC----CcccccccCC
Confidence 99987654443321 2233444443221 2223356777889999998863 4455555554
Q ss_pred C--CeeEEEEcCCC--eEEEEeCCC---cEEEEECCC-CeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614 389 S--EVLDLSWSKNG--FLLSSSADK---TVRLWQVGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (531)
Q Consensus 389 ~--~I~~l~~sp~~--~l~s~s~Dg---~V~lwdl~~-~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~ 459 (531)
+ .+..|+|+|++ .|++++.|. .|.+||++. ..+++++ .|...|.+|.|++.|..++++++.|+.|.+|+..
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 4 57799999998 777777664 499999984 4567777 4999999999999888999999999999999999
Q ss_pred CCeEEE-ecCCCCceEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe
Q 009614 460 RCQVVD-YTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 460 ~~~~~~-~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~~~~ 503 (531)
+++++. +.....++..+.|+|... .+++++-||.|-||.+.++.
T Consensus 285 tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 285 TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999985 666678999999999765 78889999999999997654
No 130
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=1.4e-18 Score=159.62 Aligned_cols=279 Identities=18% Similarity=0.263 Sum_probs=198.3
Q ss_pred cCCcceeeeecCCCceeEEccCCCchhhhhhcccccCC---CCcccccccccCCCC----CccccccCCccccccchhhH
Q 009614 142 KDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGS----SSSFVQPLPSRQDEESRDLV 214 (531)
Q Consensus 142 ~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~lr~v~~---~~~~~~~~f~~~~~~----s~~~v~~l~~~~~~~~~~~~ 214 (531)
.+|.+++|+--+.|.++..+-++. +.++ ++.+.+ ++.+-..-|..+-++ +.. +|+++..-..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h--~agE--vw~las~P~d~~ilaT~yn~~s~s~vl~~aa-iw~ipe~~~~------ 106 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFH--HAGE--VWDLASSPFDQRILATVYNDTSDSGVLTGAA-IWQIPEPLGQ------ 106 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhc--CCcc--eehhhcCCCCCceEEEEEeccCCCcceeeEE-EEecccccCc------
Confidence 358899999888888888877765 4444 666655 556655555544443 222 5555443111
Q ss_pred Hhhhhhccccccccccce-eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEc
Q 009614 215 DAKRKVKRGWLKKLGAMA-RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS 293 (531)
Q Consensus 215 ~~~k~~~~~w~~~~~~~~-~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs 293 (531)
....-+.....+. .+..++.|+.|.|++..+|+-. +..|.+|++.........+... .-.+|....++-+|+
T Consensus 107 -----S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss-~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 107 -----SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSS-ESAEMRHSFTSGAWS 179 (370)
T ss_pred -----cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccc-ccccccceecccccC
Confidence 0000011111111 2345778899999999988875 8899999998766532222111 123467788899999
Q ss_pred c--CCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCC
Q 009614 294 L--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP 371 (531)
Q Consensus 294 p--dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (531)
| +|+.+++. .|+++..||+++.++...+
T Consensus 180 pHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI------------------------------------------------- 209 (370)
T KOG1007|consen 180 PHHDGNQVATT-SDSTLQFWDLRTMKKNNSI------------------------------------------------- 209 (370)
T ss_pred CCCccceEEEe-CCCcEEEEEccchhhhcch-------------------------------------------------
Confidence 9 78888776 5789999999877643222
Q ss_pred ccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeEEEEee-cCCceEEEEEeeCCCCEEEEE
Q 009614 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISG 447 (531)
Q Consensus 372 ~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~-~~~l~~~~-h~~~V~sv~fsp~d~~~l~sg 447 (531)
-..|...|.++.|+|+. +|++|+.||.|+|||.+. ..++..+. |...|++|.|+|...+++++|
T Consensus 210 ------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 210 ------------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred ------------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 24577789999999987 999999999999999985 44566664 999999999999889999999
Q ss_pred eCCCeEEEEeCCC------------------------------CeEEEecCCCCceEEEEEcc-CCCEEEEEeCCCcEEE
Q 009614 448 SIDGKVRIWEVRR------------------------------CQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRF 496 (531)
Q Consensus 448 s~Dg~I~Iwd~~~------------------------------~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~i 496 (531)
+.|..|.+|.... +.+..+..|.+.|++++|+. |.-.+|+-+.||++.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 9999999997532 11224677899999999997 5556788999999988
Q ss_pred EeCC
Q 009614 497 YDIK 500 (531)
Q Consensus 497 wd~~ 500 (531)
=.+.
T Consensus 358 s~V~ 361 (370)
T KOG1007|consen 358 SSVP 361 (370)
T ss_pred ecCC
Confidence 7664
No 131
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.6e-19 Score=175.00 Aligned_cols=242 Identities=21% Similarity=0.357 Sum_probs=191.3
Q ss_pred HHhhhhhccccccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc-ccccccceEEcccCCCEEEEEE
Q 009614 214 VDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKF 292 (531)
Q Consensus 214 ~~~~k~~~~~w~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~-~~~~~~~~~l~~H~~~I~~l~f 292 (531)
...++...+.|.-++ ++..|.+.+..++|+|....|++++.+|.|++|++.+.... .......-+|.+|.++|.|++.
T Consensus 274 ~~~k~a~~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v 352 (577)
T KOG0642|consen 274 SDLKKAFTKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV 352 (577)
T ss_pred hhhhhhhheecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe
Confidence 345565667788777 88889999999999999999999999999999999542211 1234455679999999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc
Q 009614 293 SLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (531)
Q Consensus 293 spdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (531)
.+++.++++|+-||+|+.|++....- .... +++
T Consensus 353 ~~n~~~~ysgg~Dg~I~~w~~p~n~d--p~ds--------------------------------------------~dp- 385 (577)
T KOG0642|consen 353 PSNGEHCYSGGIDGTIRCWNLPPNQD--PDDS--------------------------------------------YDP- 385 (577)
T ss_pred cCCceEEEeeccCceeeeeccCCCCC--cccc--------------------------------------------cCc-
Confidence 99999999999999999999852210 0000 000
Q ss_pred cccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE------------------------------
Q 009614 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC------------------------------ 421 (531)
Q Consensus 373 ~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~------------------------------ 421 (531)
......+.||.+.|+.+++++.. .|++++.||+|++|+.....+
T Consensus 386 -----~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~ 460 (577)
T KOG0642|consen 386 -----SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFR 460 (577)
T ss_pred -----chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcc
Confidence 01245678999999999999987 999999999999998754332
Q ss_pred --------------EEEee--------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEE
Q 009614 422 --------------LRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY 478 (531)
Q Consensus 422 --------------l~~~~--------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~ 478 (531)
+..+. ....+..+.++| ...+.+++..|+.|+++|..++.++ ....|...++++++
T Consensus 461 ~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai 539 (577)
T KOG0642|consen 461 FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAI 539 (577)
T ss_pred cccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecceee
Confidence 00110 113466788888 7789999999999999999999988 47889999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 479 CPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 479 spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
.|+|.+|++++.|+.+++|.+....+++...
T Consensus 540 ~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 540 DPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred cCCCceEEeecCCceeehhhccchheeeccc
Confidence 9999999999999999999998777766544
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=7.6e-18 Score=170.88 Aligned_cols=257 Identities=19% Similarity=0.233 Sum_probs=196.2
Q ss_pred eEEeeecCCeEEEEeCCCCccc-------c-----cccccc------------------eEEcccCCCEEEEEEccCCCE
Q 009614 249 ELTLGQRMRRVRVHPVKKQSRE-------L-----SSLYTG------------------QEFLAHEGSILTMKFSLDGQY 298 (531)
Q Consensus 249 ~lasgs~dg~I~vwd~~~~~~~-------~-----~~~~~~------------------~~l~~H~~~I~~l~fspdg~~ 298 (531)
.+++++.|++|++|++...... + +..+.. ...-+..-.|.+++.+|+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 3789999999999998752110 0 000000 011233457999999999999
Q ss_pred EEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (531)
Q Consensus 299 Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (531)
||+|..-|.++||++.+.+....+..++..+.|+.++... +....+..++.+..+.+++.... .
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~-------------~~~kLLASasrdRlIHV~Dv~rn---y 537 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV-------------LTNKLLASASRDRLIHVYDVKRN---Y 537 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCch-------------hhhHhhhhccCCceEEEEecccc---c
Confidence 9999999999999999999888888888888777765432 22334456777888888887543 2
Q ss_pred cceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEee------cCCceEEEEEeeCCCCEEEEEeC
Q 009614 379 KPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI 449 (531)
Q Consensus 379 ~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~------h~~~V~sv~fsp~d~~~l~sgs~ 449 (531)
.++.++.+|...|+++.|.-+| .+++++.|+.|.+=-.+...-...|. ....++.|+..| ..+++++++.
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQ 616 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQ 616 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEec
Confidence 3578899999999999998877 89999999987654333222222221 345689999999 8999999999
Q ss_pred CCeEEEEeCCCCeEEEe----cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeee
Q 009614 450 DGKVRIWEVRRCQVVDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (531)
Q Consensus 450 Dg~I~Iwd~~~~~~~~~----~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~ 525 (531)
|..|+|||+.+++..+. .+|.+....+...|.|.||++.+.|.++.|||..+|+++.+.. .|...+||
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--------GHsE~VTG 688 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--------GHSEAVTG 688 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc--------Ccchheee
Confidence 99999999999988852 3456778889999999999999999999999999999987543 34577888
Q ss_pred EEEee
Q 009614 526 FQVVK 530 (531)
Q Consensus 526 l~f~p 530 (531)
+.|.+
T Consensus 689 ~kF~n 693 (1080)
T KOG1408|consen 689 VKFLN 693 (1080)
T ss_pred eeecc
Confidence 88864
No 133
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=9.1e-19 Score=165.29 Aligned_cols=241 Identities=20% Similarity=0.251 Sum_probs=188.2
Q ss_pred ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 308 (531)
.++.+|.+.|..++++. ..+++++.|.+|+.|.+... ..+++.+ .+.++.|.-+..+..+||||.+ |
T Consensus 103 ~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~--------p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i 169 (433)
T KOG0268|consen 103 RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP--------PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--I 169 (433)
T ss_pred heeecccCceeeEEecc--cceEEecCCcceeeeeccCC--------cceeeec-cccccccccccccccccccCce--e
Confidence 35777888888888876 67788889999999998752 2233433 4567788887778889999875 9
Q ss_pred EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
.|||......+..+.-....+.++.+.+.....+ ..+..+..+++|+.+......+.+. .
T Consensus 170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL---------------as~~sDrsIvLyD~R~~~Pl~KVi~-----~ 229 (433)
T KOG0268|consen 170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL---------------ASCASDRSIVLYDLRQASPLKKVIL-----T 229 (433)
T ss_pred eecccccCCccceeecCCCceeEEecCCCcchhe---------------eeeccCCceEEEecccCCccceeee-----e
Confidence 9999988888888877777677777766554433 3455777889999887554433333 2
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~ 465 (531)
...+.|+|+|.+ .+++|+.|..+..||++.- .++..+. |.+.|.+|.|+| .|+-|++||.|.+|+||.++.+..-.
T Consensus 230 mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRd 308 (433)
T KOG0268|consen 230 MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRD 308 (433)
T ss_pred ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-CcchhccccccceEEEeecCCCcchh
Confidence 345789999977 8999999999999999864 4555554 999999999999 99999999999999999999876543
Q ss_pred --ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 466 --YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 466 --~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
...--..|.++.|+.|.+++++|+.|+.|++|.....+
T Consensus 309 iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 309 IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 33334579999999999999999999999999876443
No 134
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=3.7e-18 Score=162.83 Aligned_cols=197 Identities=26% Similarity=0.396 Sum_probs=154.0
Q ss_pred CCCeEEe---eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCccccc
Q 009614 246 GDHELTL---GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDG 321 (531)
Q Consensus 246 dg~~las---gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~ 321 (531)
+..++|. ++..|-..|..+.+..+.-.. +. .+.||+++|..++|+| +.+.||||++|.+|.||++..+.....
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~-~P--~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ 119 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDAS-YP--LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD 119 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCC-CC--CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC
Confidence 3345543 344456666655543322111 11 3679999999999999 677899999999999999976553322
Q ss_pred eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-
Q 009614 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400 (531)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~- 400 (531)
+ ..|+..+.+|...|.-++|+|..
T Consensus 120 l-------------------------------------------------------tepvv~L~gH~rrVg~V~wHPtA~ 144 (472)
T KOG0303|consen 120 L-------------------------------------------------------TEPVVELYGHQRRVGLVQWHPTAP 144 (472)
T ss_pred c-------------------------------------------------------ccceEEEeecceeEEEEeecccch
Confidence 2 24688899999999999999976
Q ss_pred -eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe-cCCCC-ceEEEE
Q 009614 401 -FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIRE-IVSAVC 477 (531)
Q Consensus 401 -~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~-~~~~~-~v~~v~ 477 (531)
.|++++.|.+|.+|++.++..+.++.|.+.|+++.|+. +|.+|++.+.|.+|||||.++++++.- ..|.+ .-..+.
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI 223 (472)
T ss_pred hhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence 89999999999999999999999999999999999999 999999999999999999999999853 35543 345677
Q ss_pred EccCCCEEEEEeC---CCcEEEEeCCC
Q 009614 478 YCPDGKGGIVGTM---TGNCRFYDIKD 501 (531)
Q Consensus 478 ~spdg~~l~sgs~---dg~I~iwd~~~ 501 (531)
|-.+|..+.+|.. +..+-+||..+
T Consensus 224 fl~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 224 FLASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred EeccCceeeeccccccccceeccCccc
Confidence 8888886555543 56688888654
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-16 Score=162.05 Aligned_cols=242 Identities=17% Similarity=0.230 Sum_probs=188.0
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 314 (531)
..+.+++++...+.||.+-.+|.|-||++.. ..+....+.+|. ..|-+++|++ +..|.+.+.+|.|.-||+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCC------CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence 4567899999999999999999999999985 334444666664 6899999995 5578899999999999999
Q ss_pred cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (531)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 394 (531)
+++....+......+..++..+..... ++. +.++-++.+....-.+. ....+...++.|.++
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l--~Ig--------------cddGvl~~~s~~p~~I~--~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTIL--AIG--------------CDDGVLYDFSIGPDKIT--YKRSLMRQKSRVLSL 160 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceE--Eee--------------cCCceEEEEecCCceEE--EEeecccccceEEEE
Confidence 999988888777777776666554322 222 23332222222211111 122334457899999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~ 464 (531)
+|+|++ .+++|+.||.|++||+.++..+.... .+.-|+++.|-. ...|++|..-|+|.+||...+.++
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchh
Confidence 999999 79999999999999999998877332 334578888874 568999999999999999999988
Q ss_pred E-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614 465 D-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (531)
Q Consensus 465 ~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l 504 (531)
+ ...|...|.+++..+++.++++++.|+.|--|...+++-
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 5 777889999999999999999999999999998877654
No 136
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.5e-17 Score=154.69 Aligned_cols=220 Identities=15% Similarity=0.236 Sum_probs=159.1
Q ss_pred cccceeeeccccceeeeCCCC--eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC
Q 009614 228 LGAMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg~--~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D 305 (531)
++.+-.|.+.++++.|.++-. .|++|+.||.|.+|+.. .+.....+++|.+.|+.++.+|.|++-++.+.|
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D 148 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD 148 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-------CeEEeeeecccccccceeEecCCCceEEEEcCC
Confidence 456667788888999999876 89999999999999988 445567899999999999999999999999999
Q ss_pred CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
+.+++||+.+|+.....+..... ..+.|.+.....++. ....+-+|...... +....
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~~a-t~v~w~~~Gd~F~v~-----------------~~~~i~i~q~d~A~-----v~~~i 205 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKNKA-TLVSWSPQGDHFVVS-----------------GRNKIDIYQLDNAS-----VFREI 205 (362)
T ss_pred ceeeeehhhcCccceeeccCCcc-eeeEEcCCCCEEEEE-----------------eccEEEEEecccHh-----Hhhhh
Confidence 99999999999866555543332 224444322211111 01112222222111 11111
Q ss_pred cCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEE--eeCCCCEEEEEeCCCeEEEEeCCCC-
Q 009614 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF--NPVDDNYFISGSIDGKVRIWEVRRC- 461 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~f--sp~d~~~l~sgs~Dg~I~Iwd~~~~- 461 (531)
.....+.++.|...+.|++|..|+.|++||.....++..+. |...|-.+.+ +| ++.||++++.||.|+|||++..
T Consensus 206 ~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 206 ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP-EHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecC-CceEEEEeccCceEEEEEccccc
Confidence 12356888888877799999999999999999988888775 9999999985 34 6789999999999999999876
Q ss_pred ----eEEEecCCCCceEEEEE
Q 009614 462 ----QVVDYTDIREIVSAVCY 478 (531)
Q Consensus 462 ----~~~~~~~~~~~v~~v~~ 478 (531)
+.+-.......++++..
T Consensus 285 k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 285 KKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred cCCcceeEEeecCCccceeee
Confidence 23333333555555544
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=9.1e-18 Score=154.56 Aligned_cols=207 Identities=20% Similarity=0.322 Sum_probs=155.7
Q ss_pred cccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCccccc--e-------------ecCCCCCeeEEEeecCCcceee
Q 009614 281 LAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDG--F-------------DVQDTDPSCLYFTINHLSQLIP 344 (531)
Q Consensus 281 ~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~ 344 (531)
..|.+.|+++...+ .|+|+++|+.||.|.+||+++...... + ..+...+..+.|-|..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D------ 113 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID------ 113 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec------
Confidence 45899999999988 799999999999999999976542110 0 0111111122222211
Q ss_pred eeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCe
Q 009614 345 IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDR 420 (531)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~----~l~s~s~Dg~V~lwdl~~~~ 420 (531)
.-...+.+-|..+.+|+..+.+. ... ..-.+.|.+-+|+|-. ++++|..|-.|++-|+.+|.
T Consensus 114 ---------tGmFtssSFDhtlKVWDtnTlQ~----a~~-F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 114 ---------TGMFTSSSFDHTLKVWDTNTLQE----AVD-FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ---------CceeecccccceEEEeeccccee----eEE-eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 22235667788899999877542 122 2245678888888843 78888999999999999999
Q ss_pred EEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-e---EE-----------E-ecCCCCceEEEEEccCCC
Q 009614 421 CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-Q---VV-----------D-YTDIREIVSAVCYCPDGK 483 (531)
Q Consensus 421 ~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-~---~~-----------~-~~~~~~~v~~v~~spdg~ 483 (531)
+-+++. |.+.|.+|.|+|...-.|++|+.||.|++||++.. - ++ + -..|.+.|..+||+.||.
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 999996 99999999999977778899999999999999853 1 11 1 345777899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEE
Q 009614 484 GGIVGTMTGNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 484 ~l~sgs~dg~I~iwd~~~~~l~~~ 507 (531)
++++.+.|..+++|+..+|+-...
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ntl~ 283 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGRNTLR 283 (397)
T ss_pred hhhhccCccceEEeecccCccccc
Confidence 999999999999999998875443
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.6e-17 Score=173.47 Aligned_cols=202 Identities=18% Similarity=0.326 Sum_probs=163.4
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 310 (531)
++...-....++|+-+|+++|.|+.|-.|++-+..+...+ ..+++|.++|.+|.|+|++.+||+.+.||.|+|
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-------eeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 4444556667899999999999999999999999866544 358999999999999999999999999999999
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
|++.++.....+....... . ......
T Consensus 165 w~~~~~~~~~tl~~v~k~n-----------------------------------------------------~-~~~s~i 190 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDN-----------------------------------------------------E-FILSRI 190 (933)
T ss_pred EEcccchhhhhcccCCccc-----------------------------------------------------c-ccccce
Confidence 9999887766553221100 0 001445
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~ 466 (531)
+..++|+|++ .|+..+.|+.|++|+..+......+. +...+.+++|+| .|.|||+++.||.|.|||+.+.. .
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~---~ 266 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHE---R 266 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecccch---h
Confidence 7789999997 99999999999999999998888875 445599999999 89999999999999999999822 2
Q ss_pred cCCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (531)
Q Consensus 467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 497 (531)
......|.+++|.|+++.|-.-...|...+|
T Consensus 267 ~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 267 HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 4456789999999999877666666655444
No 139
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.2e-17 Score=166.84 Aligned_cols=242 Identities=19% Similarity=0.367 Sum_probs=186.7
Q ss_pred eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccc-
Q 009614 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK- 356 (531)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 356 (531)
..++||++.|.+|...|.|.+||+|+.||+|+||.+.++.++..+... ..+.|+.|.+.....++++......+....
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 357899999999999999999999999999999999999999888764 468899999888877777665544111000
Q ss_pred -------------ccc----cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCC---CcEEEEE
Q 009614 357 -------------SLR----KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQ 415 (531)
Q Consensus 357 -------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~D---g~V~lwd 415 (531)
... ...+.+++.|.....+....-++....|...|..|.|+..| +|++...+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 011 22345667777665444445577778899999999999999 88887653 5699999
Q ss_pred CCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCc
Q 009614 416 VGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGN 493 (531)
Q Consensus 416 l~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~ 493 (531)
+.....+..|. ..+.|.++.|+| ...+|++++. ..|+|||+..+.+++ +......|..++.+|.|.-|++|+.|+.
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred cccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence 98887777774 678899999999 6667776665 589999999987774 6666778999999999999999999999
Q ss_pred EEEEeCCCCe-EEEEeeeeecccccCCCceeeeEEEee
Q 009614 494 CRFYDIKDNQ-LYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 494 I~iwd~~~~~-l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
+..||+.-+. ..++ -+.|.+.+++++|.+
T Consensus 631 ~~WfDldlsskPyk~--------lr~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKT--------LRLHEKAVRSVAFHK 660 (733)
T ss_pred eEEEEcccCcchhHH--------hhhhhhhhhhhhhcc
Confidence 9999997543 2221 234456777777754
No 140
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=172.72 Aligned_cols=195 Identities=17% Similarity=0.318 Sum_probs=165.5
Q ss_pred cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (531)
Q Consensus 239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 318 (531)
.+++.++.|++.+.|+..|.|-++++..+-..-+-. .-.+|.++|++++...-++.+++++.+|.+++||..+...
T Consensus 452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred EEEEEeccCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence 468899999999999999999999998654332210 1258999999999998899999999999999999876653
Q ss_pred ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (531)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp 398 (531)
+..+.. ...+.++..+.
T Consensus 528 ~~~l~l---------------------------------------------------------------~~~~~~iv~hr 544 (910)
T KOG1539|consen 528 KKSLRL---------------------------------------------------------------GSSITGIVYHR 544 (910)
T ss_pred eeeecc---------------------------------------------------------------CCCcceeeeee
Confidence 332211 23455666666
Q ss_pred CC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEE
Q 009614 399 NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV 476 (531)
Q Consensus 399 ~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v 476 (531)
.. .++.+..|-.|+++|+.+.+.++.|. |.+.|+.++|+| |+++|++++.|++|++||+.++.++.......+.+++
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sl 623 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSL 623 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEecCCcceee
Confidence 55 88999999999999999999999996 999999999999 9999999999999999999999999988889999999
Q ss_pred EEccCCCEEEEEeCC-CcEEEEeCCC
Q 009614 477 CYCPDGKGGIVGTMT-GNCRFYDIKD 501 (531)
Q Consensus 477 ~~spdg~~l~sgs~d-g~I~iwd~~~ 501 (531)
.|+|+|.+||+...| .-|++|.-.+
T Consensus 624 s~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EECCCCCEEEEEEecCceEEEEEchh
Confidence 999999999999998 4599997543
No 141
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.7e-17 Score=149.17 Aligned_cols=225 Identities=16% Similarity=0.150 Sum_probs=168.5
Q ss_pred ccccccceeeeccccceeeeC--CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEE
Q 009614 225 LKKLGAMARIIDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLA 300 (531)
Q Consensus 225 ~~~~~~~~~~~~~~~s~~fsp--dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~La 300 (531)
.+.+..+.+|.+++-.++|.. .|.+||+++.||.|.||....+... ...+...|...|++|+|.| .|-.||
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~-----k~~e~~~h~~SVNsV~wapheygl~La 120 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT-----KAYEHAAHSASVNSVAWAPHEYGLLLA 120 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh-----hhhhhhhhcccceeecccccccceEEE
Confidence 345667888999999988877 8999999999999999998866322 2345778999999999988 467899
Q ss_pred EEeCCCcEEEEEcccC-c--cccceecCCCCCeeEEEeecCCcc-eeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614 301 SGGEDGTVRVWKVIEH-E--RLDGFDVQDTDPSCLYFTINHLSQ-LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (531)
Q Consensus 301 sgs~Dg~I~iWd~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (531)
.|+.||.|.|.+.... . ..+....+...+..+.+.+..... ++.-. ......++++++.|..+.+|....-..
T Consensus 121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~---~~~~~krlvSgGcDn~VkiW~~~~~~w 197 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG---PAAKVKRLVSGGCDNLVKIWKFDSDSW 197 (299)
T ss_pred EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccC---cccccceeeccCCccceeeeecCCcch
Confidence 9999999999998765 1 223345566667777777664321 11111 111134567889999999997655321
Q ss_pred cCcceeEeecCCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECCCC--eEEEEe--ecCCceEEEEEeeCCCCEEEEE
Q 009614 377 LEKPLHEFQGHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGID--RCLRVF--SHNNYVTSVAFNPVDDNYFISG 447 (531)
Q Consensus 377 ~~~~~~~~~~h~~~I~~l~~sp~~-----~l~s~s~Dg~V~lwdl~~~--~~l~~~--~h~~~V~sv~fsp~d~~~l~sg 447 (531)
..-+.+.+|.+.|.+++|.|.- +|++++.||+|.||..+.. +...++ ..+..++.+.|++ .+++|+++
T Consensus 198 --~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs 274 (299)
T KOG1332|consen 198 --KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVS 274 (299)
T ss_pred --hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec-cccEEEEe
Confidence 2234589999999999999963 8999999999999987632 222222 1567899999999 99999999
Q ss_pred eCCCeEEEEeCCC
Q 009614 448 SIDGKVRIWEVRR 460 (531)
Q Consensus 448 s~Dg~I~Iwd~~~ 460 (531)
+.|++|.+|.-..
T Consensus 275 ~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 275 GGDNKVTLWKENV 287 (299)
T ss_pred cCCcEEEEEEeCC
Confidence 9999999997553
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=6.5e-17 Score=150.21 Aligned_cols=224 Identities=17% Similarity=0.226 Sum_probs=165.1
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 315 (531)
.++.+.+|.+ ...+++|+.||.|+.+|+...... .+..|..+|.||.+++-...+++||.|++|++||..+
T Consensus 55 ~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~--------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 55 APLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED--------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred CceeeeeccC-CceEEEeccCceEEEEEecCCcce--------eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 3444567776 567899999999999999866543 3667999999999999888999999999999999986
Q ss_pred CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 395 (531)
......+.... .+.+.+... ..++.+..+..+.+|+.+...... ...-..-...+.|++
T Consensus 126 ~~~~~~~d~~k--------------kVy~~~v~g-----~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~ 184 (323)
T KOG1036|consen 126 KVVVGTFDQGK--------------KVYCMDVSG-----NRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVA 184 (323)
T ss_pred cccccccccCc--------------eEEEEeccC-----CEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEE
Confidence 44333332221 222222221 223456677788889887765432 111122345689999
Q ss_pred EcCCC-eEEEEeCCCcEEEEECCCC----eEEEEee-c---------CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 396 WSKNG-FLLSSSADKTVRLWQVGID----RCLRVFS-H---------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 396 ~sp~~-~l~s~s~Dg~V~lwdl~~~----~~l~~~~-h---------~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
.-|++ -++.++-||.|.+=.+... .....|+ | -.+|++|+|+| -...|++|+.||.|.+||+.+
T Consensus 185 ~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 185 LVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred EecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcc
Confidence 99987 8888899999988776655 2222332 2 24799999999 788999999999999999999
Q ss_pred CeEE-EecCCCCceEEEEEccCCCEEEEEeC
Q 009614 461 CQVV-DYTDIREIVSAVCYCPDGKGGIVGTM 490 (531)
Q Consensus 461 ~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~ 490 (531)
.+.+ .+......|.+++|+.||..||+|+.
T Consensus 264 rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 264 RKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 8776 46667788999999999999999875
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.76 E-value=1.8e-16 Score=155.50 Aligned_cols=277 Identities=18% Similarity=0.236 Sum_probs=201.5
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCC--------eEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMR--------RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYL 299 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg--------~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~L 299 (531)
...+|.+.+.|++++|+.-.+++|-.-| .++|||..+ +...+.+-.....|.|++|++ .|.+|
T Consensus 99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-------L~TL~V~g~f~~GV~~vaFsk~~~G~~l 171 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-------LSTLHVIGFFDRGVTCVAFSKINGGSLL 171 (626)
T ss_pred cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccc-------ceeeeeeccccccceeeeecccCCCceE
Confidence 4666778888999999999999876655 499999663 223334555677899999998 45566
Q ss_pred EEE--eCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeee--------eccccccc----------------
Q 009614 300 ASG--GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI--------DVDKEKID---------------- 353 (531)
Q Consensus 300 asg--s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~---------------- 353 (531)
+.. +.+..+.+||.+.+............+....|.|...+.++.. ....+.+.
T Consensus 172 ~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~ 251 (626)
T KOG2106|consen 172 CAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLC 251 (626)
T ss_pred EEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEE
Confidence 554 3466789999988877766665555555555555444333322 22111110
Q ss_pred -----cccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCC---------
Q 009614 354 -----KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID--------- 419 (531)
Q Consensus 354 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~--------- 419 (531)
.-..+++..++.+.+|+....++. +....|.+.|.+|+...+|.|++|+.|..|..||-.-.
T Consensus 252 v~F~engdviTgDS~G~i~Iw~~~~~~~~----k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe 327 (626)
T KOG2106|consen 252 VTFLENGDVITGDSGGNILIWSKGTNRIS----KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPE 327 (626)
T ss_pred EEEcCCCCEEeecCCceEEEEeCCCceEE----eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCch
Confidence 112367888999999999776543 34448999999999999998999999999999983210
Q ss_pred --------------------------------eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614 420 --------------------------------RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (531)
Q Consensus 420 --------------------------------~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~ 467 (531)
-.+.++.|....+.++.+| +.+.+++++.|+.+++|+ ..++.-..
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~ 404 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTK 404 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEE
Confidence 0111234778889999999 899999999999999999 55555455
Q ss_pred CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
....++.++.|+|.| .++.|+..|...+.|.++..+++.. +. ...|+.+.|+|
T Consensus 405 ~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~--------~d-~~~ls~v~ysp 457 (626)
T KOG2106|consen 405 IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH--------TD-NEQLSVVRYSP 457 (626)
T ss_pred EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE--------ec-CCceEEEEEcC
Confidence 567789999999999 9999999999999999986665421 11 46788888887
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.75 E-value=5.9e-16 Score=153.11 Aligned_cols=192 Identities=14% Similarity=0.219 Sum_probs=144.3
Q ss_pred CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcccCccccceecC
Q 009614 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQ 325 (531)
Q Consensus 247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (531)
+..+++++.|+.|++||..+.. ..+.+..|. .+.+++|+|+|+.+ ++++.++.|++||+.+++....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~-------~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~---- 68 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE-------VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT---- 68 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc-------eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe----
Confidence 3567889999999999987543 223455444 46789999999976 5677899999999876643211
Q ss_pred CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-
Q 009614 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL- 403 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~- 403 (531)
+..+. .+..++|+|++ .++
T Consensus 69 ----------------------------------------------------------~~~~~-~~~~~~~~~~g~~l~~ 89 (300)
T TIGR03866 69 ----------------------------------------------------------LPSGP-DPELFALHPNGKILYI 89 (300)
T ss_pred ----------------------------------------------------------ccCCC-CccEEEECCCCCEEEE
Confidence 11111 24567899988 554
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC-eEEEEeCCCCeEEEecCCCCceEEEEEccCC
Q 009614 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQVVDYTDIREIVSAVCYCPDG 482 (531)
Q Consensus 404 s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg-~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg 482 (531)
+++.++.|++||+.+.+.+..+.+...+.+++|+| ++.++++++.++ .+.+||..+++..........+..++|+|+|
T Consensus 90 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 168 (300)
T TIGR03866 90 ANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG 168 (300)
T ss_pred EcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC
Confidence 45668999999999998888887666688999999 999999888765 5778899988776543344556789999999
Q ss_pred CEEEEEe-CCCcEEEEeCCCCeEEEEeee
Q 009614 483 KGGIVGT-MTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 483 ~~l~sgs-~dg~I~iwd~~~~~l~~~~~~ 510 (531)
++|++++ .+|.|++||+.+++.+..+..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeee
Confidence 9886554 689999999999987766543
No 145
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.75 E-value=3.8e-17 Score=165.81 Aligned_cols=289 Identities=17% Similarity=0.189 Sum_probs=193.4
Q ss_pred ccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (531)
Q Consensus 225 ~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (531)
+...+.+.+|.+.|..++|+|.|.++++.+.|.+-|++-.-..+.+...+- .-+-|...++|++|-+....+++|.+
T Consensus 351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia---RPQiHGyDl~c~~~vn~~~~FVSgAd 427 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA---RPQIHGYDLTCLSFVNEDLQFVSGAD 427 (764)
T ss_pred eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec---ccccccccceeeehccCCceeeeccc
Confidence 344556888999999999999999999999999999986653333322221 22447788999999886668999999
Q ss_pred CCcEEEEEcccCcc--ccceec-----CCCCCeeEEEeecCCcceeeeeccccccccccccccCC-----------CceE
Q 009614 305 DGTVRVWKVIEHER--LDGFDV-----QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS-----------DLTC 366 (531)
Q Consensus 305 Dg~I~iWd~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 366 (531)
.+.+|+++....-. +..+.. ....+..... -++.........-....+.. ....
T Consensus 428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V--------paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV--------PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeeeecCcHHHHHHHHHHhCccccCchhccccccc--------ccccccCCCCcccccccccccceeeecccccCchh
Confidence 99999998743210 000000 0000000000 00000000000000000000 0000
Q ss_pred EEeCCcccc----ccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCC-----CcEEEEECCCCeEEEEe-ecCCceEEEE
Q 009614 367 VVLPPKVFR----LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRCLRVF-SHNNYVTSVA 435 (531)
Q Consensus 367 ~~~~~~~~~----~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~D-----g~V~lwdl~~~~~l~~~-~h~~~V~sv~ 435 (531)
..-++..-. ..-..++.+.||...|.+++.+|++ ++++++.. ..|+||+..+-..++.+ .|.-.|+.|+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 000110000 0113467789999999999999999 88888754 34999999887777755 4999999999
Q ss_pred EeeCCCCEEEEEeCCCeEEEEeCCCCeEE-----EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC--eEEEEe
Q 009614 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN--QLYQQN 508 (531)
Q Consensus 436 fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-----~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~--~l~~~~ 508 (531)
|+| |++||++.+.|.++.+|........ ....|...|.+..|+|++.+++|++.|.+|++|..... +.+.++
T Consensus 580 FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 580 FSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred ECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence 999 9999999999999999998654322 36789999999999999999999999999999999887 443332
Q ss_pred eeeecccccCCCceeeeEEEeeC
Q 009614 509 QICLQGKKKLPGKRITGFQVVKI 531 (531)
Q Consensus 509 ~~~~~~~kk~~~~~It~l~f~p~ 531 (531)
. --..+..+|++++.|.
T Consensus 659 a------~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 659 A------CLKFSLAVTAVAYLPV 675 (764)
T ss_pred c------hhccCCceeeEEeecc
Confidence 1 1223468888888763
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=2.7e-17 Score=157.69 Aligned_cols=242 Identities=25% Similarity=0.407 Sum_probs=171.4
Q ss_pred ccccceeeeCCCC-eEEeeecCCeEEEEeCCCCccccc--ccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614 236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS--SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (531)
Q Consensus 236 ~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~--~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 312 (531)
..+.++.|.++.. .+|+|+.|..|++|.+......-. ...-...+..|..+|+++.|+|+|.+||||+++|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 4556788888887 999999999999998875543321 2223346788999999999999999999999999999998
Q ss_pred cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (531)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 392 (531)
...-.. +. ... +. .... .. -.....+.+|...|.
T Consensus 94 ~~~~~~---~~---~d~-e~-------------~~~k----------------------e~----w~v~k~lr~h~~diy 127 (434)
T KOG1009|consen 94 QGDVRI---FD---ADT-EA-------------DLNK----------------------EK----WVVKKVLRGHRDDIY 127 (434)
T ss_pred ecCcCC---cc---ccc-hh-------------hhCc----------------------cc----eEEEEEecccccchh
Confidence 643110 00 000 00 0000 00 012455678999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC--
Q 009614 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-- 468 (531)
Q Consensus 393 ~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~-- 468 (531)
.++|+|++ .+++++.|..+++||+..|+.+..+. |..+|..++|.| -.+++++-+.|.+.+++.+...+++....
T Consensus 128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~ 206 (434)
T KOG1009|consen 128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLD 206 (434)
T ss_pred hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence 99999999 99999999999999999999999886 999999999999 89999999999988888876544332111
Q ss_pred ------------------CCC----ceEEEEEccCCCEEEEEeC----CCcE-----EEEeCCCCeEEEEeeeeeccccc
Q 009614 469 ------------------IRE----IVSAVCYCPDGKGGIVGTM----TGNC-----RFYDIKDNQLYQQNQICLQGKKK 517 (531)
Q Consensus 469 ------------------~~~----~v~~v~~spdg~~l~sgs~----dg~I-----~iwd~~~~~l~~~~~~~~~~~kk 517 (531)
|.+ -...++|+|||.+|++... .+.+ ++|+ ++.+.+.-.++ .
T Consensus 207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfs---rk~l~rP~~~l----p 279 (434)
T KOG1009|consen 207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFS---RKDLKRPAARL----P 279 (434)
T ss_pred EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeec---cccccCceeec----C
Confidence 111 1345789999999988643 2222 3333 33332222222 2
Q ss_pred CCCceeeeEEEeeC
Q 009614 518 LPGKRITGFQVVKI 531 (531)
Q Consensus 518 ~~~~~It~l~f~p~ 531 (531)
.+.+....+.|+|+
T Consensus 280 ~~~k~~lavr~~pV 293 (434)
T KOG1009|consen 280 SPKKPALAVRFSPV 293 (434)
T ss_pred CCCcceEEEEeeee
Confidence 34567888888885
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=7.1e-17 Score=162.73 Aligned_cols=254 Identities=14% Similarity=0.195 Sum_probs=163.7
Q ss_pred cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (531)
Q Consensus 237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 316 (531)
.+..++|.|||..++.+. +.++.|||...+. ..+++++|++.|+|++|+.||+.+|+|+.|+.|.+|+-+-.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc-------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 566799999999988774 4679999998554 34579999999999999999999999999999999986433
Q ss_pred ccccceecCCCCCeeEEEeecCCcceeeeec-------cccccc------cccccccCCCceEEEeCCccccc-----cC
Q 009614 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDV-------DKEKID------KTKSLRKSSDLTCVVLPPKVFRL-----LE 378 (531)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~ 378 (531)
..++ ..+...+.|+.|.|-......+.-. ...... .....+.+.|+.+.........+ .+
T Consensus 86 G~Lk--YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 86 GILK--YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred ceee--eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 3221 2345667777776655433222111 111100 01112223344444333222111 12
Q ss_pred cceeEeec---CCCCeeEEEEcCCC------eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC
Q 009614 379 KPLHEFQG---HSSEVLDLSWSKNG------FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI 449 (531)
Q Consensus 379 ~~~~~~~~---h~~~I~~l~~sp~~------~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~ 449 (531)
.+...+.. .+.+|.+++|+|+. .++......++.+|.+.....-+.-.-.-...|+++.| +|.|++.|+.
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~-NGEy~LiGGs 242 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFT-NGEYILLGGS 242 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheecc-CCcEEEEccC
Confidence 33333444 34456666666663 45555555556555553322211222233445666776 8889999999
Q ss_pred CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 450 Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~ 501 (531)
|+.+.+|-...-.+-.......+|+.++..|++++++.|+.||+|.-|++-.
T Consensus 243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 9999998665544445666778999999999999999999999999998753
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.74 E-value=4.6e-17 Score=163.82 Aligned_cols=255 Identities=16% Similarity=0.240 Sum_probs=167.3
Q ss_pred cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCC
Q 009614 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDG 306 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg 306 (531)
+....+|...|-.+.|-|....|++++.|.++++||++..... -...+.||++.|.+++|.|. ...|++|+.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg 167 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDG 167 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-----cceeecccccccchhhhccCCCcceeeccCCC
Confidence 3344567777888899998888999999999999999865432 22357899999999999994 55889999999
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
.|.|||+..... ..+..... ++.-..+. . +.-.....+.+.....
T Consensus 168 ~illWD~R~n~~-d~~e~~~~---~~~~~~n~--------------------------~-----ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 168 EILLWDCRCNGV-DALEEFDN---RIYGRHNT--------------------------A-----PTPSKPLKKRIRKWKA 212 (720)
T ss_pred cEEEEEEeccch-hhHHHHhh---hhhccccC--------------------------C-----CCCCchhhcccccccc
Confidence 999999865441 11110000 00000000 0 0000000122333344
Q ss_pred CCCCeeE---EEEcCCC-eEEEEeC-CCcEEEEECCCCeEEEEee---------c---CCceEEEEEeeCCCCEEEEEeC
Q 009614 387 HSSEVLD---LSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFS---------H---NNYVTSVAFNPVDDNYFISGSI 449 (531)
Q Consensus 387 h~~~I~~---l~~sp~~-~l~s~s~-Dg~V~lwdl~~~~~l~~~~---------h---~~~V~sv~fsp~d~~~l~sgs~ 449 (531)
|...|.+ +.+..|. .|++++. |+.|++||++...+..... | ...++++.... .|.+|.+.+.
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCt 291 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCT 291 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEec
Confidence 5554444 4444455 8998887 9999999999766543321 3 34577888877 7788888888
Q ss_pred CCeEEEEeCCCCeEEE---ecCCCC--ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceee
Q 009614 450 DGKVRIWEVRRCQVVD---YTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (531)
Q Consensus 450 Dg~I~Iwd~~~~~~~~---~~~~~~--~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It 524 (531)
|+.|+.|++.+..+-. +.++.. --..-+.+||+.+|++|+.|+..++|.+.+.++-. .. ..-+...+|
T Consensus 292 D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~---~~----l~Ght~eVt 364 (720)
T KOG0321|consen 292 DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP---AL----LLGHTREVT 364 (720)
T ss_pred CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh---hh----hhCcceEEE
Confidence 9999999998754332 222211 12334678999999999999999999998765421 11 233456778
Q ss_pred eEEEee
Q 009614 525 GFQVVK 530 (531)
Q Consensus 525 ~l~f~p 530 (531)
.++++|
T Consensus 365 ~V~w~p 370 (720)
T KOG0321|consen 365 TVRWLP 370 (720)
T ss_pred EEeecc
Confidence 888776
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=4e-17 Score=159.83 Aligned_cols=234 Identities=18% Similarity=0.251 Sum_probs=197.3
Q ss_pred cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (531)
Q Consensus 237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 316 (531)
-+.++.+.|||+.|++|+.-.++.|||+......+. .++....-+.++++.+||.+..+++..||.|.|||+.+.
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence 345678999999999999999999999985443222 233334456888999999999999999999999999999
Q ss_pred ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec--CCCCeeEE
Q 009614 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG--HSSEVLDL 394 (531)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~l 394 (531)
..+..++.+.....|+.+..+. ..+.+++.|..+..|+.+..+. +.. ....|.+|
T Consensus 542 ~~VrqfqGhtDGascIdis~dG----------------tklWTGGlDntvRcWDlregrq-------lqqhdF~SQIfSL 598 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDG----------------TKLWTGGLDNTVRCWDLREGRQ-------LQQHDFSSQIFSL 598 (705)
T ss_pred eeeecccCCCCCceeEEecCCC----------------ceeecCCCccceeehhhhhhhh-------hhhhhhhhhheec
Confidence 9999999999999998876544 3345778888999999876432 222 35679999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCce
Q 009614 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV 473 (531)
Q Consensus 395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v 473 (531)
..+|++ .|+.|-..+.|.|......+....-.|...|.++.|.+ .|++|++.+.|.-+..|...-+..+-.......|
T Consensus 599 g~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqskE~SsV 677 (705)
T KOG0639|consen 599 GYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV 677 (705)
T ss_pred ccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeeccccCcc
Confidence 999999 99999999999999887776666667999999999999 9999999999999999999988887777778899
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614 474 SAVCYCPDGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 474 ~~v~~spdg~~l~sgs~dg~I~iwd~ 499 (531)
.+...+-|.+|||+|+.|....+|.+
T Consensus 678 lsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 678 LSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999999999888875
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=4.8e-17 Score=157.58 Aligned_cols=261 Identities=17% Similarity=0.169 Sum_probs=183.3
Q ss_pred ccccCCCCcccccccccCCCCCccccccCCccccccchhhHH-hhhhhccccccccccceeeeccccceeeeCCC-CeEE
Q 009614 174 LQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVD-AKRKVKRGWLKKLGAMARIIDRHGSATLKPGD-HELT 251 (531)
Q Consensus 174 lr~v~~~~~~~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~-~~k~~~~~w~~~~~~~~~~~~~~~s~~fspdg-~~la 251 (531)
...-+.|..+++..|+..+- ||.|--+....+.-..+ ...++++.-.++.....+|.+.+-+++|+..- ..||
T Consensus 186 ~~~~~~gNyvAiGtmdp~Ie-----IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLa 260 (463)
T KOG0270|consen 186 SKSGGAGNYVAIGTMDPEIE-----IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLA 260 (463)
T ss_pred CCCCCCcceEEEeccCceeE-----EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEE
Confidence 34555688899999987766 77766555443332221 11112222222344566788888888877755 4678
Q ss_pred eeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCccccceecCCCCCe
Q 009614 252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330 (531)
Q Consensus 252 sgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 330 (531)
+|+.|.+|++||+.+++. .+++..|.+.|.+++|+| ...+|++|+.|++|.+.|.+........-.....+-
T Consensus 261 SgsaD~TV~lWD~~~g~p-------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 261 SGSADKTVKLWDVDTGKP-------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ecCCCceEEEEEcCCCCc-------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 899999999999996553 345778999999999999 577999999999999999874222111111112222
Q ss_pred eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCC
Q 009614 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD 408 (531)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~D 408 (531)
.+.|.+... ...+.+..++.++-++.+.. ++++.+++.|.++|.+|++++.. +|++++.|
T Consensus 334 kv~w~~~se---------------~~f~~~tddG~v~~~D~R~~---~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 334 KVAWDPHSE---------------NSFFVSTDDGTVYYFDIRNP---GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred EEEecCCCc---------------eeEEEecCCceEEeeecCCC---CCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence 233322221 22345677888888887764 38899999999999999999875 99999999
Q ss_pred CcEEEEECCCCeEEEEeec---CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614 409 KTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 409 g~V~lwdl~~~~~l~~~~h---~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~ 464 (531)
+.|++|++.......+..| -+...|.++.|....+++.|+..+.++|||+.+...+
T Consensus 396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9999999986655444332 2447888899966678888999999999999887654
No 151
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=2.5e-16 Score=150.47 Aligned_cols=213 Identities=18% Similarity=0.256 Sum_probs=167.2
Q ss_pred cccceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCC
Q 009614 228 LGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGED 305 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D 305 (531)
...+.+|...+-.+.|.| ++..||+|+.|-+|.||++..............++.||...|-.|+|+|. .+.|+|++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 345677888888899999 45667899999999999998776655444556789999999999999994 5689999999
Q ss_pred CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
.+|.|||+.+++.+ .++.
T Consensus 154 n~v~iWnv~tgeal--------------------------------------------------------------i~l~ 171 (472)
T KOG0303|consen 154 NTVSIWNVGTGEAL--------------------------------------------------------------ITLD 171 (472)
T ss_pred ceEEEEeccCCcee--------------------------------------------------------------eecC
Confidence 99999999988742 2233
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCC-ceEEEEEeeCCCCEEEEEe---CCCeEEEEeCC
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNN-YVTSVAFNPVDDNYFISGS---IDGKVRIWEVR 459 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~-~V~sv~fsp~d~~~l~sgs---~Dg~I~Iwd~~ 459 (531)
|...|.++.|+.+| +|++.+.|+.|||||.++++.+..- .|.+ .-..+.|-- ++.++-+|- .+..+-+||..
T Consensus 172 -hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 172 -HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred -CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcc
Confidence 89999999999999 9999999999999999999998876 3543 334555665 777555553 46789999987
Q ss_pred CCe---EEEecCCCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeE
Q 009614 460 RCQ---VVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQL 504 (531)
Q Consensus 460 ~~~---~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~~~l 504 (531)
+-. ...-.+....|.---|.||.+.+..++ .|+.||.|.+.....
T Consensus 250 nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 250 NLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 643 224455566777677888888876544 599999999987663
No 152
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=2e-16 Score=164.73 Aligned_cols=250 Identities=20% Similarity=0.204 Sum_probs=175.2
Q ss_pred ccccceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC--CEEEEEeCCCcEEEEE
Q 009614 236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWK 312 (531)
Q Consensus 236 ~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~iWd 312 (531)
..+.+++|+|... ++|.|..+|.|.+||+.......... .......|..+|+.+.|..+- .-+++++.||.|..|+
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4556788998654 56778899999999999776542111 111245689999999997643 4599999999999998
Q ss_pred cccCccccceecCC------------CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC--
Q 009614 313 VIEHERLDGFDVQD------------TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-- 378 (531)
Q Consensus 313 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 378 (531)
++............ .....+.|.+.. ....+.++..|.++.-.........
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~---------------p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD---------------PNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCC---------------CceEEEEcCCcEEEEEeccCCcccccc
Confidence 76544322111110 112222222222 2223455555555553333222222
Q ss_pred --cceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECC-CCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCe
Q 009614 379 --KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452 (531)
Q Consensus 379 --~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~-~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~ 452 (531)
+++..+..|.+.|..+.++|-+ .+++++ |.+|+||... ...++..+. +..+|++++|+|.....|+++..||.
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 4566778899999999999988 445555 9999999987 556665554 77889999999988899999999999
Q ss_pred EEEEeCCCCeE--E-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 453 VRIWEVRRCQV--V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 453 I~Iwd~~~~~~--~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
|.|||+..... + ...-.....+.+.|++.|+.|++|...|++++|++...
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 99999986432 2 33333566788889999999999999999999999654
No 153
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=1.8e-16 Score=146.67 Aligned_cols=223 Identities=11% Similarity=0.124 Sum_probs=164.2
Q ss_pred eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC--EEEEEeCCCcEEE
Q 009614 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVRV 310 (531)
Q Consensus 233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~I~i 310 (531)
.|...+-+++|+-||..+++|+.|+.+++||+..++. +.+..|.++|.++.|-+... .|+||+.|++|+.
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~--------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf 141 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV--------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF 141 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe--------eeeeecccceeEEEEecCCCcceeEecccccceee
Confidence 3556777899999999999999999999999986532 35778999999999987655 8999999999999
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC---
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH--- 387 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--- 387 (531)
||++....+..+..++. +........ ..+.+..+..+.+|..... ..+++.+
T Consensus 142 WD~R~~~pv~t~~LPeR---vYa~Dv~~p----------------m~vVata~r~i~vynL~n~------~te~k~~~Sp 196 (347)
T KOG0647|consen 142 WDTRSSNPVATLQLPER---VYAADVLYP----------------MAVVATAERHIAVYNLENP------PTEFKRIESP 196 (347)
T ss_pred cccCCCCeeeeeeccce---eeehhccCc----------------eeEEEecCCcEEEEEcCCC------cchhhhhcCc
Confidence 99998877776665433 111111111 1122333444455444221 1112222
Q ss_pred -CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--e-cC---------CceEEEEEeeCCCCEEEEEeCCCeE
Q 009614 388 -SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--S-HN---------NYVTSVAFNPVDDNYFISGSIDGKV 453 (531)
Q Consensus 388 -~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~-h~---------~~V~sv~fsp~d~~~l~sgs~Dg~I 453 (531)
.-.+.||+..++. ..+.|+-.|.+-|..+..+.+...| + |. ..|++|+|+| ....|++.+.||+.
T Consensus 197 Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 197 LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTF 275 (347)
T ss_pred ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceE
Confidence 2357899988887 7799999999999999876333333 2 32 2578999999 77889999999999
Q ss_pred EEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEe
Q 009614 454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGT 489 (531)
Q Consensus 454 ~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs 489 (531)
..||-.....+ ....|..+|++.+|+.+|.++|-+.
T Consensus 276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999887665 4688899999999999999987764
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.2e-16 Score=151.02 Aligned_cols=227 Identities=16% Similarity=0.229 Sum_probs=171.8
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEccc--CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccC
Q 009614 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (531)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (531)
.+.|++|.|+|....|++|+.||+++||.+.. ...++.+.....++.+..|.++....++ ..+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~---------------~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIF---------------TSG 277 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEE---------------ecc
Confidence 46899999999999999999999999999853 4466677777778888888776654333 233
Q ss_pred CCceEEEeCCccccccCcceeEeecCC-CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeC
Q 009614 362 SDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV 439 (531)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~ 439 (531)
.....+.|+.....+ ..+....++. ..+....++|++ +|+..+..|.|.|....+++.+..+..++.|..++|+.
T Consensus 278 rrky~ysyDle~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS- 354 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS- 354 (514)
T ss_pred cceEEEEeecccccc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-
Confidence 344566666644332 2233344443 457788899998 99999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCc--eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccccc
Q 009614 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI--VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (531)
Q Consensus 440 d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~--v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk 517 (531)
+++.|++++.+|.|.+||++...++......+. -+++|.+++|.|||+|+..|.|.|||.++...-...+ ++.. -.
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk-Pik~-~d 432 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK-PIKT-VD 432 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC-chhh-hh
Confidence 999999999999999999999988864333333 4678888999999999999999999976543221111 1100 01
Q ss_pred CCCceeeeEEEee
Q 009614 518 LPGKRITGFQVVK 530 (531)
Q Consensus 518 ~~~~~It~l~f~p 530 (531)
.-...|++++|+|
T Consensus 433 NLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 433 NLTTAITSLQFNH 445 (514)
T ss_pred hhheeeeeeeeCc
Confidence 1135799999987
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=9.4e-17 Score=163.00 Aligned_cols=207 Identities=22% Similarity=0.337 Sum_probs=164.1
Q ss_pred ccceeeeccccceeeeCCCCeEEeeecCC-----eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe
Q 009614 229 GAMARIIDRHGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg-----~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs 303 (531)
..+.+|-..+.+++.+|+|+++|++.+.. .|++|+.. .....+.+.+|.-.|+.|+|||||++|++++
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-------~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-------NWLQVQELEGHSLTVTRLAFSPDGRYLLSVS 591 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-------chhhhheecccceEEEEEEECCCCcEEEEee
Confidence 34667778888999999999999987654 58999887 3334457899999999999999999999999
Q ss_pred CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (531)
Q Consensus 304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (531)
.|.++.+|........ .+ ....
T Consensus 592 RDRt~sl~~~~~~~~~-e~---------------------------------------------------------~fa~ 613 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDIKD-EF---------------------------------------------------------RFAC 613 (764)
T ss_pred cCceEEeeeeecccch-hh---------------------------------------------------------hhcc
Confidence 9999999997443210 00 0122
Q ss_pred eecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEE---eecCCceEEEEEeeCCCC----EEEEEeCCCeE
Q 009614 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRV---FSHNNYVTSVAFNPVDDN----YFISGSIDGKV 453 (531)
Q Consensus 384 ~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~--~~l~~---~~h~~~V~sv~fsp~d~~----~l~sgs~Dg~I 453 (531)
.+.|+.-|.+..|+|++ +++|+|.|++|++|..... +.+.. ..+...|+.++|.|.+.+ .+++|-..|.|
T Consensus 614 ~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI 693 (764)
T KOG1063|consen 614 LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEI 693 (764)
T ss_pred ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEE
Confidence 56799999999999999 8999999999999999877 55444 348899999999986555 78899999999
Q ss_pred EEEeCCC-------Ce------EEEecCCCCceEEEEEccC----------CCEEEEEeCCCcEEEEeCC
Q 009614 454 RIWEVRR-------CQ------VVDYTDIREIVSAVCYCPD----------GKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 454 ~Iwd~~~-------~~------~~~~~~~~~~v~~v~~spd----------g~~l~sgs~dg~I~iwd~~ 500 (531)
.+|.... +. .-....+...|+.++|.|. ...|++|+.|..++|+++.
T Consensus 694 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 694 VLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9999651 11 0124556778999999974 2346999999999999874
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2e-15 Score=140.22 Aligned_cols=206 Identities=19% Similarity=0.277 Sum_probs=156.0
Q ss_pred cccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC----ccccceecCCCCCeeEEEeecCCcceeeeecccccccccc
Q 009614 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (531)
Q Consensus 281 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (531)
.+|.+-|.++.|.+.|+.+|+|+.|++|+|||.... .+....+.+...+..+.|.....+.+++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA------------ 77 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVA------------ 77 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEE------------
Confidence 479999999999999999999999999999996433 3445566777777777777777666654
Q ss_pred ccccCCCceEEEeCCccccccC-----cceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEE----
Q 009614 357 SLRKSSDLTCVVLPPKVFRLLE-----KPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRV---- 424 (531)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~---- 424 (531)
+.+.|..+.+|......... ....++....+.|+++.|.|.. .|++++.||+||||+...--.+..
T Consensus 78 --~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 78 --TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred --EEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 34566677777763222111 2345677788899999999964 899999999999998764333222
Q ss_pred --ee--------cCCceEEEEEeeC--CCCEEEEEeCC-----CeEEEEeCCCC--eEE---EecCCCCceEEEEEccC-
Q 009614 425 --FS--------HNNYVTSVAFNPV--DDNYFISGSID-----GKVRIWEVRRC--QVV---DYTDIREIVSAVCYCPD- 481 (531)
Q Consensus 425 --~~--------h~~~V~sv~fsp~--d~~~l~sgs~D-----g~I~Iwd~~~~--~~~---~~~~~~~~v~~v~~spd- 481 (531)
+. +..+..||.|+|. ...+||+|+.+ +.+.||..... +.. .+.+|..+|+.|+|.|+
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 22 5677899999983 34688888876 58999987653 222 47899999999999995
Q ss_pred ---CCEEEEEeCCCcEEEEeCCC
Q 009614 482 ---GKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 482 ---g~~l~sgs~dg~I~iwd~~~ 501 (531)
-.+||+++.|| |+||.+..
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEee
Confidence 35799999999 99999974
No 157
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.9e-16 Score=147.68 Aligned_cols=194 Identities=20% Similarity=0.329 Sum_probs=151.7
Q ss_pred CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (531)
Q Consensus 248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (531)
..+|++...|.|++||..++ ...+++++|...++.++|.. ....+.+|+.||+|++||++.......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg-------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~-- 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS-- 111 (376)
T ss_pred eeEEEEecCCeEEEEeccch-------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee--
Confidence 56888999999999998853 33457899999999999976 45689999999999999998766433321
Q ss_pred CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC-CCeeEEEEcCCC-eEE
Q 009614 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLL 403 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~sp~~-~l~ 403 (531)
+..|. .+..+++..-++ .++
T Consensus 112 ----------------------------------------------------------~~~~~~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 112 ----------------------------------------------------------WTQQSGTPFICLDLNCKKNIIA 133 (376)
T ss_pred ----------------------------------------------------------ccCCCCCcceEeeccCcCCeEE
Confidence 12222 344555555344 555
Q ss_pred EEe----CCCcEEEEECCCCeE-EEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe----EEEecCCCCc
Q 009614 404 SSS----ADKTVRLWQVGIDRC-LRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREI 472 (531)
Q Consensus 404 s~s----~Dg~V~lwdl~~~~~-l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~----~~~~~~~~~~ 472 (531)
+|. .+-.|.+||++..+. +..+. |.+.||+|+|+|.+.++|++||.||-|.|||+.... ++....+...
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS 213 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS 213 (376)
T ss_pred eccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence 554 367799999998776 66664 999999999999999999999999999999998653 3356777888
Q ss_pred eEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614 473 VSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 473 v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~~~~ 508 (531)
|..+.|..++ +.|.+-+..++..+|+++.+......
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 9999999887 55888899999999999988754433
No 158
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=1.7e-16 Score=159.26 Aligned_cols=115 Identities=19% Similarity=0.456 Sum_probs=101.8
Q ss_pred CeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe-------EEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-------CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (531)
Q Consensus 390 ~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~-------~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~ 459 (531)
.|+++.|.|-. .|+.++.||.|+||.+..+- +...+. |...|+++.|+|.-.+.|++++.|.+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 47889999965 99999999999999987542 333443 999999999999888999999999999999999
Q ss_pred CCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614 460 RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (531)
Q Consensus 460 ~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l 504 (531)
+.+.. .+.+|.+.|..++|+|||+.+++.+.||+|++|+.++++.
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 98765 6999999999999999999999999999999999887653
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=4.1e-16 Score=141.83 Aligned_cols=251 Identities=12% Similarity=0.154 Sum_probs=161.8
Q ss_pred ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-ccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGT 307 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (531)
..++.|...|.++.|..++. |.+|...|.|++|.+.+..... .+. .|...|+.+.--|+ ..|.+-+.|+.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~-------~~r~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP-------LIRLFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccch-------hhhhhccceeeceeecCC-cchhhcCCCce
Confidence 34557778888899988876 7889999999999998655432 244 46788999999887 46889999999
Q ss_pred EEEEEcccCccccceecCCCCCeeEEEeecCCccee--eeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI--PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
+.+|++..+..+..-...-.......++........ .........+.....-++..-.+.+-+. .-.
T Consensus 79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-----------~~~ 147 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-----------SER 147 (323)
T ss_pred EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-----------hhc
Confidence 999999765433222111111111111100000000 0000000000000000011111111111 112
Q ss_pred cCCCCeeEEEEcCC-C---eEEEEeCCCcEEEEECCCCeEEEEe-----------ecCCceEEEEEeeC-----------
Q 009614 386 GHSSEVLDLSWSKN-G---FLLSSSADKTVRLWQVGIDRCLRVF-----------SHNNYVTSVAFNPV----------- 439 (531)
Q Consensus 386 ~h~~~I~~l~~sp~-~---~l~s~s~Dg~V~lwdl~~~~~l~~~-----------~h~~~V~sv~fsp~----------- 439 (531)
+..+.+.+..|... + +|++|..+|.|.+||+.++..+-.+ .|..+|.++.|.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 34567777775443 2 7788899999999999886332221 15555555554432
Q ss_pred ----------------------------------CCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCE
Q 009614 440 ----------------------------------DDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKG 484 (531)
Q Consensus 440 ----------------------------------d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~ 484 (531)
|++++|+++.|+.||||..++.+++. +..|...|.+++|+|+...
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence 89999999999999999999998884 7889999999999999999
Q ss_pred EEEEeCCCcEEEEeC
Q 009614 485 GIVGTMTGNCRFYDI 499 (531)
Q Consensus 485 l~sgs~dg~I~iwd~ 499 (531)
+|.++.|++|.+|++
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999986
No 160
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.5e-15 Score=133.55 Aligned_cols=240 Identities=20% Similarity=0.327 Sum_probs=171.1
Q ss_pred ceeeeCCCCeEEeeecCCeEEEEeCCCCcc---cccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSR---ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (531)
Q Consensus 240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~---~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 316 (531)
+-+++|.++++++|..+|.|.+..++.... +.......-..++|.++|+.|+|. ..+|++|+. |.|+-|...+.
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhh
Confidence 458999999999999999999998874321 111111222458999999999998 446777765 99999988654
Q ss_pred ccccc------eecC-------CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614 317 ERLDG------FDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (531)
Q Consensus 317 ~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (531)
..... ...+ -..+..+...+... ..+..++|+.++.|+.... +...+
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en----------------Si~~AgGD~~~y~~dlE~G----~i~r~ 151 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN----------------SILFAGGDGVIYQVDLEDG----RIQRE 151 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCC----------------cEEEecCCeEEEEEEecCC----EEEEE
Confidence 43111 1100 01122222222221 1234457888888888774 44688
Q ss_pred eecCCCCeeEEEEcC-CCeEEEEeCCCcEEEEECCCCeEEEEee---c--------CCceEEEEEeeCCCCEEEEEeCCC
Q 009614 384 FQGHSSEVLDLSWSK-NGFLLSSSADKTVRLWQVGIDRCLRVFS---H--------NNYVTSVAFNPVDDNYFISGSIDG 451 (531)
Q Consensus 384 ~~~h~~~I~~l~~sp-~~~l~s~s~Dg~V~lwdl~~~~~l~~~~---h--------~~~V~sv~fsp~d~~~l~sgs~Dg 451 (531)
++||+..|.++.-.. ++.+++|+.||++|+||++++++++++. | ...|.+++. +..++++|+. .
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgG-p 227 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGG-P 227 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCC-C
Confidence 999999999998844 4599999999999999999999998874 2 234566665 5578877654 5
Q ss_pred eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 452 KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 452 ~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
.+.+|.++..+..........+..+.|-.| .+++++..+.|.-|.+. |.+....+
T Consensus 228 ~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip 282 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP 282 (325)
T ss_pred ceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc
Confidence 899999999999888888888998998654 67888878889999876 55555444
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.2e-16 Score=144.31 Aligned_cols=164 Identities=23% Similarity=0.323 Sum_probs=135.2
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceE
Q 009614 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (531)
Q Consensus 287 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (531)
-.|+.|++.|.+||+|+.||.|.|||+.|...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------ 57 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------ 57 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence 78999999999999999999999999876541
Q ss_pred EEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (531)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~ 445 (531)
-..+.+|..+|.+++|+++| .|++++.|..|.+||+..+.+++.+..+.+|+.++|+|.+.+.++
T Consensus 58 --------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 58 --------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred --------------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 23456799999999999999 999999999999999999999999999999999999997777777
Q ss_pred EEeCCCeEEEEeCCCCe--EEEecC---CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeee
Q 009614 446 SGSIDGKVRIWEVRRCQ--VVDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (531)
Q Consensus 446 sgs~Dg~I~Iwd~~~~~--~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~ 512 (531)
+.-.+..-.+-++...+ ++.... ......+..|.+.|+++++|...|.+.+||..+-+++..+++..
T Consensus 124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits 195 (405)
T KOG1273|consen 124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS 195 (405)
T ss_pred EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech
Confidence 77666666666666533 222111 11223334689999999999999999999999999888777654
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=3.4e-15 Score=139.45 Aligned_cols=266 Identities=14% Similarity=0.160 Sum_probs=179.8
Q ss_pred ceeeeCCCCeEEeeecCCeEEEEeCCCCccccc-----ccccceEEcc-cCCCEEEEEEc-------cCCCEEEEEeCCC
Q 009614 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEFLA-HEGSILTMKFS-------LDGQYLASGGEDG 306 (531)
Q Consensus 240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~-----~~~~~~~l~~-H~~~I~~l~fs-------pdg~~Lasgs~Dg 306 (531)
...|+|||..|++-+.|..+++|++........ ...+..+++- ....|+.-+|- |+..++|+.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 358999999999999999999998863211110 1111112221 23467777885 5777999999999
Q ss_pred cEEEEEcccCccccceecCCC-----CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCC-cccc---cc
Q 009614 307 TVRVWKVIEHERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP-KVFR---LL 377 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~ 377 (531)
-|++||.-+|+....+..-.. ...++.|+++....+ .+....+.+++. +..+ ..
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-----------------aGykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-----------------AGYKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-----------------ecccceEEEeeccCCCCCCcch
Confidence 999999999987655543221 233455555443222 223334444443 1111 01
Q ss_pred CcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeC-CCeE
Q 009614 378 EKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DGKV 453 (531)
Q Consensus 378 ~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~-Dg~I 453 (531)
....+...+..+-|.+++++|.. .++.++.-.++-||.-..+.++..+. |.+.|+.++|.+ +++.|.+|+. |-+|
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKI 275 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeE
Confidence 11112234457889999999976 89999999999999988888888875 999999999999 9999999875 7799
Q ss_pred EEEeCCCCeEE--EecCCCC---ceEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEEEEeeeeecccccCCCceeeeEE
Q 009614 454 RIWEVRRCQVV--DYTDIRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-NQLYQQNQICLQGKKKLPGKRITGFQ 527 (531)
Q Consensus 454 ~Iwd~~~~~~~--~~~~~~~---~v~~v~~spdg~~l~sgs~dg~I~iwd~~~-~~l~~~~~~~~~~~kk~~~~~It~l~ 527 (531)
..||++..+-. .+..|.. .-.-....|+|++|++|+.||.|++||+++ +.....+. .+.-.+.+++
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvs 347 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVS 347 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------ccccccccee
Confidence 99999975432 3444433 222355678999999999999999999987 55332221 1224567777
Q ss_pred EeeC
Q 009614 528 VVKI 531 (531)
Q Consensus 528 f~p~ 531 (531)
++|+
T Consensus 348 lnP~ 351 (406)
T KOG2919|consen 348 LNPI 351 (406)
T ss_pred cCcc
Confidence 7764
No 163
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=3.5e-16 Score=154.45 Aligned_cols=213 Identities=21% Similarity=0.307 Sum_probs=158.9
Q ss_pred CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCC
Q 009614 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327 (531)
Q Consensus 248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 327 (531)
..++.++.||++.|.+-... ..+.+.+|.++|.+-.|+|||.-|+|+|+||.|++|.- +|-.-..+.....
T Consensus 76 d~~~i~s~DGkf~il~k~~r--------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR--------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEecccch--------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCc
Confidence 45677888999999765421 22347789999999999999999999999999999985 4544445556667
Q ss_pred CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEe
Q 009614 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (531)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s 406 (531)
.+.|+.|.++....+++.. +.+.+-+... ...+-..+.|.+-|.++.|++.. .+++|+
T Consensus 147 ~v~c~~W~p~S~~vl~c~g-----------------~h~~IKpL~~----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG-----------------GHISIKPLAA----NSKIIRWRAHDGLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred eeEEEEECCCCCceEEecC-----------------CeEEEeeccc----ccceeEEeccCcEEEEeecCccccceeecC
Confidence 7889999888876655432 1122211111 12244578899999999999988 999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEE
Q 009614 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (531)
Q Consensus 407 ~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 486 (531)
.|-..++||-........-.|..+|++++|+| + ..++.++.+ ++|+ -....+.|..++|++||..++
T Consensus 206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~n-t~R~----------~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSYN-TARF----------SSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred CceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeeee-eeee----------cCCCccceEEEEEcCCCceee
Confidence 99999999986655555556999999999999 6 777777653 4441 223456789999999999999
Q ss_pred EEeCCCcEEEEeCCCCe
Q 009614 487 VGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 487 sgs~dg~I~iwd~~~~~ 503 (531)
+|+..|.+.+=.+-..+
T Consensus 273 ~gt~~G~v~~A~~ieq~ 289 (737)
T KOG1524|consen 273 CGTSTGQLIVAYAIEQQ 289 (737)
T ss_pred ccccCceEEEeeeehhh
Confidence 99999987655444333
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.68 E-value=1.9e-16 Score=148.06 Aligned_cols=211 Identities=22% Similarity=0.408 Sum_probs=156.1
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCccccceec
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 324 (531)
...++|+|+.-|.|+|.|+.+... ...+.+|..+|+.|+|.|+ .++|++|+.|.+|++|++++..++..+
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~-------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf-- 174 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQC-------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF-- 174 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhh-------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe--
Confidence 356889999999999999985443 3458899999999999995 478999999999999999988754332
Q ss_pred CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE
Q 009614 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (531)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~ 403 (531)
.-+.+|.+.|.++.|+++| +|+
T Consensus 175 ---------------------------------------------------------GG~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 175 ---------------------------------------------------------GGVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred ---------------------------------------------------------cccccccCcEEEEEEcCCCCeee
Confidence 2246799999999999999 999
Q ss_pred EEeCCCcEEEEECCCCe-------------------------EEEEe----ecCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614 404 SSSADKTVRLWQVGIDR-------------------------CLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (531)
Q Consensus 404 s~s~Dg~V~lwdl~~~~-------------------------~l~~~----~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~ 454 (531)
++++|.+|++|++...+ ....| .|..+|-|+.| -++++++-+-++.|.
T Consensus 198 ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw---~gd~ilSkscenaI~ 274 (385)
T KOG1034|consen 198 SCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW---FGDFILSKSCENAIV 274 (385)
T ss_pred ccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH---HhhheeecccCceEE
Confidence 99999999999997321 11112 17888889888 468999999999999
Q ss_pred EEeCCC-Ce-------------EE-EecCCCCceEEE--EEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccccc
Q 009614 455 IWEVRR-CQ-------------VV-DYTDIREIVSAV--CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (531)
Q Consensus 455 Iwd~~~-~~-------------~~-~~~~~~~~v~~v--~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk 517 (531)
.|..-. .+ ++ .+.-....|+-+ +|.|-+++||.|...|.|.+||++........++. +.
T Consensus 275 ~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~----~s 350 (385)
T KOG1034|consen 275 CWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT----HS 350 (385)
T ss_pred EEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE----ec
Confidence 998721 11 11 122233345544 45567889999999999999999988775322222 11
Q ss_pred CCCceeeeEEEe
Q 009614 518 LPGKRITGFQVV 529 (531)
Q Consensus 518 ~~~~~It~l~f~ 529 (531)
..++.|.-.+|+
T Consensus 351 ~~~~tVRQ~sfS 362 (385)
T KOG1034|consen 351 KSGSTVRQTSFS 362 (385)
T ss_pred cccceeeeeeec
Confidence 223555555554
No 165
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.1e-16 Score=150.86 Aligned_cols=212 Identities=15% Similarity=0.199 Sum_probs=151.3
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccc--ccccceEEcccCCCEEEEEEccC--CCEEEEEeCCC
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS--SLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDG 306 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~--~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg 306 (531)
+..|+..+.++.|+-||.++++|++||.|.+|.+-..-.... .......+..|+-+|+++...+. ..+|+|++.|.
T Consensus 119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence 456777888899999999999999999999998764322211 23344578899999999998774 35899999999
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCC------------ccc
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP------------KVF 374 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 374 (531)
++++||+..+..+.++..+. .+.++.+.+.. ..+ +.++.++.+.+... +.+
T Consensus 199 t~k~wdlS~g~LLlti~fp~-si~av~lDpae--~~~--------------yiGt~~G~I~~~~~~~~~~~~~~v~~k~~ 261 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITFPS-SIKAVALDPAE--RVV--------------YIGTEEGKIFQNLLFKLSGQSAGVNQKGR 261 (476)
T ss_pred eEEEEEeccceeeEEEecCC-cceeEEEcccc--cEE--------------EecCCcceEEeeehhcCCccccccccccc
Confidence 99999999998776664432 23333333222 222 22333333333222 223
Q ss_pred cccCcceeEeecCCC--CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCC
Q 009614 375 RLLEKPLHEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID 450 (531)
Q Consensus 375 ~~~~~~~~~~~~h~~--~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~D 450 (531)
......+..+.||.+ .|+|++++-+| +|++|+.||.|+|||+.+.++++++. ..++|+.+++.|.....+..-...
T Consensus 262 ~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ 341 (476)
T KOG0646|consen 262 HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQ 341 (476)
T ss_pred ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccC
Confidence 334556778899998 99999999999 99999999999999999999999998 789999999988333333333333
Q ss_pred CeEEEEeCC
Q 009614 451 GKVRIWEVR 459 (531)
Q Consensus 451 g~I~Iwd~~ 459 (531)
-.+-.|++.
T Consensus 342 ps~~~~~lk 350 (476)
T KOG0646|consen 342 PSLPNPHLK 350 (476)
T ss_pred ccCCchHhh
Confidence 344445443
No 166
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.5e-16 Score=152.18 Aligned_cols=234 Identities=16% Similarity=0.239 Sum_probs=171.9
Q ss_pred hccccccccc---cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--
Q 009614 220 VKRGWLKKLG---AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-- 294 (531)
Q Consensus 220 ~~~~w~~~~~---~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-- 294 (531)
....|++++. .+.+|.+.|+++.|+.+|.+|++|+.|-++.|||.-..+... ..-.||...|.+++|-|
T Consensus 32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh------sI~TgHtaNIFsvKFvP~t 105 (758)
T KOG1310|consen 32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH------SISTGHTANIFSVKFVPYT 105 (758)
T ss_pred cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee------eeecccccceeEEeeeccC
Confidence 3455666554 488999999999999999999999999999999987333221 13468999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccc
Q 009614 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (531)
Q Consensus 295 dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (531)
+.++++||..|..|+++|+...+.-..-. +
T Consensus 106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~--------------------------~------------------------ 135 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDH--------------------------G------------------------ 135 (758)
T ss_pred CCeEEEeccCcceEEEEeccccccccccc--------------------------C------------------------
Confidence 56689999999999999986533100000 0
Q ss_pred cccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEE-------EEee----cCCceEEEEEeeCCC
Q 009614 375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCL-------RVFS----HNNYVTSVAFNPVDD 441 (531)
Q Consensus 375 ~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l-------~~~~----h~~~V~sv~fsp~d~ 441 (531)
...+.+-+..|...|..|+..|++ .+.+++.||+|+-+|++..... ..+. .--...|+..+|.+.
T Consensus 136 --~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp 213 (758)
T KOG1310|consen 136 --MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRP 213 (758)
T ss_pred --ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCC
Confidence 012344567799999999999998 9999999999999999863211 1111 123468899999899
Q ss_pred CEEEEEeCCCeEEEEeCCCC--------e----------EEEe--cCCC-----------CceEEEEEccCCCEEEEEeC
Q 009614 442 NYFISGSIDGKVRIWEVRRC--------Q----------VVDY--TDIR-----------EIVSAVCYCPDGKGGIVGTM 490 (531)
Q Consensus 442 ~~l~sgs~Dg~I~Iwd~~~~--------~----------~~~~--~~~~-----------~~v~~v~~spdg~~l~sgs~ 490 (531)
.+|++|+.|--.++||.+.. . ++.+ .+|- ..++-+.|+|+|.-|++.-.
T Consensus 214 ~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~ 293 (758)
T KOG1310|consen 214 YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG 293 (758)
T ss_pred ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC
Confidence 99999999999999995421 1 1211 1111 12677899999988877766
Q ss_pred CCcEEEEeCCCCeEEEEeeee
Q 009614 491 TGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 491 dg~I~iwd~~~~~l~~~~~~~ 511 (531)
...|+++|+..++-...+...
T Consensus 294 gEhVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 294 GEHVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred CeEEEEEeecCCCCceeecCc
Confidence 778999999988876655443
No 167
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.67 E-value=1.1e-15 Score=153.94 Aligned_cols=194 Identities=18% Similarity=0.285 Sum_probs=146.0
Q ss_pred CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC
Q 009614 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD 326 (531)
Q Consensus 247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~ 326 (531)
...|+.+..+|.|.++|.......+.. .......+|..+|..++|-|....|++++.|.++++||+.+.++..
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G------ 136 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG------ 136 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec------
Confidence 456788999999999999865543211 1123467899999999999966789999999999999998776421
Q ss_pred CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEE
Q 009614 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS 404 (531)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s 404 (531)
...+.||.+.|.+++|.|.+ .|++
T Consensus 137 ------------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 137 ------------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCT 162 (720)
T ss_pred ------------------------------------------------------ceeecccccccchhhhccCCCcceee
Confidence 22367899999999999987 9999
Q ss_pred EeCCCcEEEEECCCCe--------------------EEEEe--------ecCCceEE---EEEeeCCCCEEEEEeC-CCe
Q 009614 405 SSADKTVRLWQVGIDR--------------------CLRVF--------SHNNYVTS---VAFNPVDDNYFISGSI-DGK 452 (531)
Q Consensus 405 ~s~Dg~V~lwdl~~~~--------------------~l~~~--------~h~~~V~s---v~fsp~d~~~l~sgs~-Dg~ 452 (531)
|+.||.|.|||++... +.+.. .+...|.+ +.+.. |...||+++. |+.
T Consensus 163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~ 241 (720)
T KOG0321|consen 163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADST 241 (720)
T ss_pred ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcc
Confidence 9999999999997432 11101 13333433 44444 8889999887 999
Q ss_pred EEEEeCCCCeEE---------EecCC---CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 453 VRIWEVRRCQVV---------DYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 453 I~Iwd~~~~~~~---------~~~~~---~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
|+|||+++.+.. .+..+ .-.+++++....|.+|.+.+.|+.|++|++.+.
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 999999986433 12223 335778888888899999999999999999754
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.65 E-value=2.6e-15 Score=146.10 Aligned_cols=208 Identities=19% Similarity=0.246 Sum_probs=155.7
Q ss_pred cceEEcccCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcccCc----cccceecCCCCCeeEEEeecCCcceeeeeccc
Q 009614 276 TGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349 (531)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (531)
..+.++-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+ .+..+..+..++.++.|.+.....++..
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss---- 253 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS---- 253 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee----
Confidence 344567789999999999954 588889999999999995322 2334556667788888888877766554
Q ss_pred cccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-EEEee-
Q 009614 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS- 426 (531)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~-l~~~~- 426 (531)
+.|+.+..-+...... ..+..+......+.++.++... .++.+..=|...+||++++.. ...+.
T Consensus 254 -----------SyDGtiR~~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 254 -----------SYDGTIRLQDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred -----------ccCceeeeeeecchhh--HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence 3444444443322111 1122223344566777787766 666777667999999998665 33333
Q ss_pred cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC---e--EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---Q--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~---~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
|...|++|+++|....+||+++.|++++|||++.- . .+....|...|.+++|+|.+-.|++.+.|..|+|||..
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 88899999999999999999999999999999862 1 36788899999999999998889999999999999984
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=4e-15 Score=137.08 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=165.8
Q ss_pred eccccceeeeCCCC-----eEEeeecCCeEEEEeCCCC--cccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCC
Q 009614 235 IDRHGSATLKPGDH-----ELTLGQRMRRVRVHPVKKQ--SRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG 306 (531)
Q Consensus 235 ~~~~~s~~fspdg~-----~lasgs~dg~I~vwd~~~~--~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg 306 (531)
...+..+.|.|+.. +||+. +..+++|.+... ............-..|..++++..|+. +-++|.+++-|-
T Consensus 96 ~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 96 PYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 34455566777653 44544 467999998843 222222111222345678999999988 788999999999
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
+..|||+.++.. ......+..
T Consensus 174 TCTiWdie~~~~-----------------------------------------------------------~~vkTQLIA 194 (364)
T KOG0290|consen 174 TCTIWDIETGVS-----------------------------------------------------------GTVKTQLIA 194 (364)
T ss_pred eEEEEEEeeccc-----------------------------------------------------------cceeeEEEe
Confidence 999999987621 001234567
Q ss_pred CCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-e---cCCceEEEEEeeCCCCEEEEEeCC-CeEEEEeCC
Q 009614 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-S---HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVR 459 (531)
Q Consensus 387 h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~-~---h~~~V~sv~fsp~d~~~l~sgs~D-g~I~Iwd~~ 459 (531)
|...|.+++|...+ .+++.+.||.||+||++...--..+ . ...+...++|++.|.+|+|+-..| ..|.|.|++
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 99999999999976 9999999999999999876543333 2 356789999999999999987665 479999999
Q ss_pred CCe--EEEecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 460 RCQ--VVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 460 ~~~--~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
... +..+.+|...|++|+|.|. ...|++++.|..+.|||+...-. +....+.- ....+..|..||++|
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~--~~~~dPil-ay~a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR--ENGEDPIL-AYTAGGEVNQIQWSS 345 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc--cCCCCchh-hhhccceeeeeeecc
Confidence 743 3469999999999999995 47899999999999999975322 00000000 112456777777765
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=4.1e-16 Score=161.05 Aligned_cols=251 Identities=15% Similarity=0.258 Sum_probs=189.5
Q ss_pred ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 308 (531)
+.+.+|...|.|+.|...|.++++|+.|..|+||...+.. +...+.||.+.|+.++.+.+..++|+++.|..|
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------CLASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------hhccCCCCccccchhccchhhhhhhhcccCceE
Confidence 3467788899999999999999999999999999987544 334589999999999999999999999999999
Q ss_pred EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC--cc------
Q 009614 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE--KP------ 380 (531)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------ 380 (531)
++|.+..+..+..+..+.+.+..+.|.+-. ..+.++++.+|+.+..-... .|
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------SSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc--------------------cCCCCCceEeccccccccccCCCCCCcccc
Confidence 999999999999999999888888877654 23445555555544100000 00
Q ss_pred ------------------eeEeecCCCCeeEEEEcCCC-eE-----------EEEeCCCcEEEEECCCCeEEEEee-cCC
Q 009614 381 ------------------LHEFQGHSSEVLDLSWSKNG-FL-----------LSSSADKTVRLWQVGIDRCLRVFS-HNN 429 (531)
Q Consensus 381 ------------------~~~~~~h~~~I~~l~~sp~~-~l-----------~s~s~Dg~V~lwdl~~~~~l~~~~-h~~ 429 (531)
..........+.+++|..+. .+ +++-.+..+++|++.+++.++.+. |..
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 00001111123334444443 33 334455668899999998888775 999
Q ss_pred ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (531)
Q Consensus 430 ~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~ 506 (531)
++..+.+||.+.....+++.||+..|||+-.+.+++ +...+..+..-.|++||..++....-|.++|...-.++-+.
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence 999999999888888999999999999999887763 22335566778999999999999999999999876665543
No 171
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=1.5e-15 Score=152.47 Aligned_cols=201 Identities=16% Similarity=0.310 Sum_probs=154.0
Q ss_pred eeeCCCCeEEe--eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCcc
Q 009614 242 TLKPGDHELTL--GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER 318 (531)
Q Consensus 242 ~fspdg~~las--gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~ 318 (531)
-|+.+...+|+ .+.-|.|-||+++......... +...+ ....|+.+.|.| |...||.+++||.|++|.+..+..
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv-~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGV-MPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCccc-ccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 37777777775 5567999999998655432211 11111 346799999999 888999999999999999976643
Q ss_pred ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (531)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp 398 (531)
.... ..|...+.+|...|+.|.|+|
T Consensus 663 ~e~~-------------------------------------------------------~tPe~~lt~h~eKI~slRfHP 687 (1012)
T KOG1445|consen 663 PENE-------------------------------------------------------MTPEKILTIHGEKITSLRFHP 687 (1012)
T ss_pred Cccc-------------------------------------------------------CCcceeeecccceEEEEEecc
Confidence 2111 235567888999999999999
Q ss_pred CC--eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC---CCCc
Q 009614 399 NG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD---IREI 472 (531)
Q Consensus 399 ~~--~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~---~~~~ 472 (531)
=. .|++++.|-+|+|||+++++....+ .|.+.|..++|+| +|+.+++.+.||+|++|+.+++..-...+ ....
T Consensus 688 LAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 688 LAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred hhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence 65 9999999999999999998876666 5999999999999 99999999999999999998865332111 1223
Q ss_pred eEEEEEccCCCEEEEEeCCC----cEEEEeCCC
Q 009614 473 VSAVCYCPDGKGGIVGTMTG----NCRFYDIKD 501 (531)
Q Consensus 473 v~~v~~spdg~~l~sgs~dg----~I~iwd~~~ 501 (531)
--.|.|.-||+++++.+.|. .|.+||.++
T Consensus 767 gARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 767 GARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred ceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 34577888999998887764 478888764
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.64 E-value=5.7e-15 Score=135.98 Aligned_cols=209 Identities=18% Similarity=0.268 Sum_probs=151.1
Q ss_pred eccccceeeeCCCCeE-EeeecC-------CeEEEEeCCCCccc--ccccccceEEc-ccCCCEEEEEEccCCCEEEEEe
Q 009614 235 IDRHGSATLKPGDHEL-TLGQRM-------RRVRVHPVKKQSRE--LSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGG 303 (531)
Q Consensus 235 ~~~~~s~~fspdg~~l-asgs~d-------g~I~vwd~~~~~~~--~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs 303 (531)
.+.+-.++-+|-.+.+ ++...+ ..+.||.+...... ..++.....+. .|-+.|.||.|.|++..||+-.
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 3444456666655544 433221 34789988754432 22233333333 4567999999999999998876
Q ss_pred CCCcEEEEEcccCccc-cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614 304 EDGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (531)
Q Consensus 304 ~Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (531)
|..|.+|++.++..+ ..+...
T Consensus 143 -dn~i~l~~l~ess~~vaev~ss--------------------------------------------------------- 164 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLSS--------------------------------------------------------- 164 (370)
T ss_pred -cCceEEEEcccCcchheeeccc---------------------------------------------------------
Confidence 788999999876542 111100
Q ss_pred EeecCCCCeeEEEEcCC--CeEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614 383 EFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (531)
Q Consensus 383 ~~~~h~~~I~~l~~sp~--~~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~ 458 (531)
.-.+|....++-+|+|. +.-+....|+++..||+++..+...+. |...|..+.|+|....+|++|+.||.|+|||.
T Consensus 165 ~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~ 244 (370)
T KOG1007|consen 165 ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT 244 (370)
T ss_pred ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEec
Confidence 01124455677789983 455555678999999999988887775 99999999999966778999999999999999
Q ss_pred CCCe--EEEecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 009614 459 RRCQ--VVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 459 ~~~~--~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~ 501 (531)
+.-+ +..+.+|...|++|.|+|. .++|++|+.|..|.+|....
T Consensus 245 R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 245 RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 9754 3368999999999999995 47788999999999998754
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.63 E-value=1.6e-14 Score=138.74 Aligned_cols=273 Identities=17% Similarity=0.232 Sum_probs=171.3
Q ss_pred ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcc-------c--ccccccceEEcccCCCEEEEEEccCCC
Q 009614 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-------E--LSSLYTGQEFLAHEGSILTMKFSLDGQ 297 (531)
Q Consensus 227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~-------~--~~~~~~~~~l~~H~~~I~~l~fspdg~ 297 (531)
-+..+..|...++.+.|+|+|.++|+|+.+|.|.+|....-.. . .........+.+|...|+.++|+|+++
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN 136 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence 3446778888999999999999999999999999998772111 0 111333456889999999999999999
Q ss_pred EEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceE-----EEeCCc
Q 009614 298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC-----VVLPPK 372 (531)
Q Consensus 298 ~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 372 (531)
++++++-|..+++||+..|.....+..+...+..+.|.+-...... ...+.. ...+.......+ .+....
T Consensus 137 ~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s-~s~dr~----~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS-KSSDRH----PEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhh-hccCcc----cceeeeeeeeeeeeeeeeEeeec
Confidence 9999999999999999999998888888877777776554322111 011100 000000000000 000001
Q ss_pred cccccC-cceeEeec--CCCCeeEEEEcCCC-eEEEEeC----CC-----cEEEEECC-CCeEEEEee-cCCceEEEEEe
Q 009614 373 VFRLLE-KPLHEFQG--HSSEVLDLSWSKNG-FLLSSSA----DK-----TVRLWQVG-IDRCLRVFS-HNNYVTSVAFN 437 (531)
Q Consensus 373 ~~~~~~-~~~~~~~~--h~~~I~~l~~sp~~-~l~s~s~----Dg-----~V~lwdl~-~~~~l~~~~-h~~~V~sv~fs 437 (531)
.....+ +...-+.. -..-...++|+|+| +|++.+. .+ +.++|+-. ..++...+. ...++..+.|+
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~ 291 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS 291 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence 110001 11111111 12234567899999 6666431 22 22344322 112222222 33455566665
Q ss_pred eC-----------------CCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614 438 PV-----------------DDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 438 p~-----------------d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 498 (531)
|. ..-.+|.++. ..|.|||..+..++- -.-|-..|+.++|++||..|+..+.||-+-+--
T Consensus 292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vt 370 (434)
T KOG1009|consen 292 PVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVT 370 (434)
T ss_pred eeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEE
Confidence 53 2234556655 489999999977663 344667899999999999999999999998888
Q ss_pred CCCCeEE
Q 009614 499 IKDNQLY 505 (531)
Q Consensus 499 ~~~~~l~ 505 (531)
+...++-
T Consensus 371 fe~~elg 377 (434)
T KOG1009|consen 371 FEPWELG 377 (434)
T ss_pred Ecchhcc
Confidence 7766554
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=5.4e-13 Score=136.39 Aligned_cols=251 Identities=25% Similarity=0.442 Sum_probs=189.4
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEE-ccCCC-EEEEEeC-CC
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKF-SLDGQ-YLASGGE-DG 306 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~f-spdg~-~Lasgs~-Dg 306 (531)
...+...+.++.+.+.+..++.++.++.+.+|+...... ....+.++. ..+..+.+ ++++. +++..+. |+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK------LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce------eEEEEeccCCCceeeEEEECCCcceEEeccCCCCc
Confidence 445566777889999999999999999999999986541 122344433 37777777 88887 5555455 99
Q ss_pred cEEEEEccc-CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccC-CCceEEEeCCccccccCcceeEe
Q 009614 307 TVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS-SDLTCVVLPPKVFRLLEKPLHEF 384 (531)
Q Consensus 307 ~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
.+.+|++.. ......+..+...+..+.+.+... ..+... .++.+.+|+... ...+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~----~~~~~~~ 194 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK----------------LLASGSSLDGTIKLWDLRT----GKPLSTL 194 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCC----------------EEEecCCCCCceEEEEcCC----CceEEee
Confidence 999999987 666666666666666555555543 112222 367777887765 3457777
Q ss_pred ecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEE-Eee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR-VFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~-~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
.+|...|.+++|+|++ .+++++.|+.|++||...+..+. .+. |...+ ...|+| ++.++++++.|+.+++|++..
T Consensus 195 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecC
Confidence 8899999999999988 44444999999999999888777 444 66664 338999 778999999999999999987
Q ss_pred CeE-E-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 461 CQV-V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 461 ~~~-~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
... + ....|...+.++.|.|++..+++++.|+.+++|++.+........
T Consensus 273 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred CCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 654 3 345778899999999999999889999999999998887665544
No 175
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=8.3e-15 Score=141.68 Aligned_cols=201 Identities=22% Similarity=0.265 Sum_probs=139.9
Q ss_pred cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (531)
Q Consensus 239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 318 (531)
..++|+++|..+++|+.||.+|||++...... ....+|.+.|.+|.|+|||++|++-+.| ..+||++.++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh-------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 45899999999999999999999998744333 3467899999999999999999999999 899999999965
Q ss_pred ccceecCCCC--CeeEEEeecCCcc-eeeeeccccccccccccccCCCceEEEeCCcccccc-CcceeEeecCCCCeeEE
Q 009614 319 LDGFDVQDTD--PSCLYFTINHLSQ-LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHSSEVLDL 394 (531)
Q Consensus 319 ~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~I~~l 394 (531)
+......... ...+.|....... +..... ....+.+..++...|.-. --+..+...-...|.++
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~------------~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl 287 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAAS------------QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL 287 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEe------------cCCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence 5544321111 1112222222111 111110 011111222222222111 00111112234579999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
+++++| +++.|+.||.|.|++..+-++++... |...|+.+.|+| +.+++++-+.|..+.|..+.-
T Consensus 288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 999999 99999999999999999999888886 999999999999 999999999999888877654
No 176
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.4e-13 Score=139.99 Aligned_cols=183 Identities=19% Similarity=0.320 Sum_probs=147.7
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC
Q 009614 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (531)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (531)
..+|.+|+|+.+.+.||.+=.||.|-||++..+=..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-------------------------------------------- 60 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-------------------------------------------- 60 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee--------------------------------------------
Confidence 468999999999999999999999999998653211
Q ss_pred ceEEEeCCccccccCcceeEeec-CCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCC
Q 009614 364 LTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD 441 (531)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~ 441 (531)
...+.+ ....|..|+|++.+.|.+.+.+|.|.-||+.+.+.+..+. ..+.|++++.+| .+
T Consensus 61 -----------------~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~ 122 (691)
T KOG2048|consen 61 -----------------EPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-EN 122 (691)
T ss_pred -----------------eEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-cc
Confidence 112222 3567999999988899999999999999999999998887 678999999999 88
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEEE---ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614 442 NYFISGSIDGKVRIWEVRRCQVVD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (531)
Q Consensus 442 ~~l~sgs~Dg~I~Iwd~~~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~ 518 (531)
..++.|+.||.+..++...+++.. +...++.|.++.|+|++..|++|+.||.|++||+..+.-+.-....+-+-++.
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR 202 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC
Confidence 999999999988888888877663 44556889999999999999999999999999999998877444444333332
Q ss_pred CCceeeeEEE
Q 009614 519 PGKRITGFQV 528 (531)
Q Consensus 519 ~~~~It~l~f 528 (531)
...-|=+++|
T Consensus 203 ~~~iVWSv~~ 212 (691)
T KOG2048|consen 203 EPTIVWSVLF 212 (691)
T ss_pred CceEEEEEEE
Confidence 3334445544
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.61 E-value=8.1e-15 Score=137.26 Aligned_cols=231 Identities=18% Similarity=0.307 Sum_probs=161.1
Q ss_pred ccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614 229 GAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (531)
+.+.+|-..++.+.++|+. ++++++++|..|++|++.+...... .--+.||.+.|.++.|+++|.+|+++|.|.+
T Consensus 129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V----fGG~egHrdeVLSvD~~~~gd~i~ScGmDhs 204 (385)
T KOG1034|consen 129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV----FGGVEGHRDEVLSVDFSLDGDRIASCGMDHS 204 (385)
T ss_pred cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE----ecccccccCcEEEEEEcCCCCeeeccCCcce
Confidence 4567777888999999987 5678899999999999986554321 1125689999999999999999999999999
Q ss_pred EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc-eeEeec
Q 009614 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP-LHEFQG 386 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 386 (531)
|++|++...+....+... ..+.++..... ++.... .-| ..+-.-
T Consensus 205 lk~W~l~~~~f~~~lE~s------~~~~~~~t~~p--------------------------fpt~~~---~fp~fst~di 249 (385)
T KOG1034|consen 205 LKLWRLNVKEFKNKLELS------ITYSPNKTTRP--------------------------FPTPKT---HFPDFSTTDI 249 (385)
T ss_pred EEEEecChhHHhhhhhhh------cccCCCCccCc--------------------------CCcccc---cccccccccc
Confidence 999999865543333211 11111110000 000000 000 113345
Q ss_pred CCCCeeEEEEcCCCeEEEEeCCCcEEEEECC-CCe-------------EEEEee-cCCceEEEE--EeeCCCCEEEEEeC
Q 009614 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG-IDR-------------CLRVFS-HNNYVTSVA--FNPVDDNYFISGSI 449 (531)
Q Consensus 387 h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~-~~~-------------~l~~~~-h~~~V~sv~--fsp~d~~~l~sgs~ 449 (531)
|...|-|+.|--+ ++++-+-++.|..|... -++ .+..+. ....|+-|. |+| -.+.||.|..
T Consensus 250 HrnyVDCvrw~gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq 327 (385)
T KOG1034|consen 250 HRNYVDCVRWFGD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQ 327 (385)
T ss_pred ccchHHHHHHHhh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccC
Confidence 8889999998754 88888888999999872 111 122222 334455554 566 6789999999
Q ss_pred CCeEEEEeCCCCeEEE-----ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 450 DGKVRIWEVRRCQVVD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 450 Dg~I~Iwd~~~~~~~~-----~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
.|+|.+||++...... -......|...+|+.||..|+..+.|+.|.-||..
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999876532 22334578999999999999999999999999853
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.1e-15 Score=161.56 Aligned_cols=213 Identities=20% Similarity=0.321 Sum_probs=168.2
Q ss_pred cceeeeccccceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCc
Q 009614 230 AMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGT 307 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~ 307 (531)
+...|.+.|..+.|++.+. +||+|+.+|.|.|||+.+....+... -..-.+.|.+++|+.. ...||+++.+|.
T Consensus 111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCC
Confidence 3445667788899999877 99999999999999999865544322 1234678999999874 457899999999
Q ss_pred EEEEEcccCccccceecCCCC--CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 308 VRVWKVIEHERLDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
+.|||++..+.+..+...... ...+.|.+++...++....+ .....+.+|+.+.. ..|++++.
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d------------d~~PviqlWDlR~a---ssP~k~~~ 250 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD------------DSAPVIQLWDLRFA---SSPLKILE 250 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCC------------CCCceeEeeccccc---CCchhhhc
Confidence 999999988777666554443 34566767666555543222 12334667776543 46788899
Q ss_pred cCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~ 462 (531)
+|...|.+|.|++.+ +|++++.|+.|.+|+.++++.+..+. ..+.+..+.|+|.+...|++++.||+|.||.+....
T Consensus 251 ~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 251 GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999999987 99999999999999999999999996 678899999999888899999999999999998654
No 179
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1e-14 Score=141.07 Aligned_cols=173 Identities=31% Similarity=0.406 Sum_probs=133.8
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEE
Q 009614 288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367 (531)
Q Consensus 288 ~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (531)
.+++|+++|..|++|+.||++|||++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t------------------------------------------------- 178 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT------------------------------------------------- 178 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-------------------------------------------------
Confidence 7899999999999999999999999755432
Q ss_pred EeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCC--
Q 009614 368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDD-- 441 (531)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~-- 441 (531)
+.....|.+.|.+|.|+|+| .|++-+.| ..+||+++++.++.... .+.....+.|.. ++
T Consensus 179 -------------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~ 243 (398)
T KOG0771|consen 179 -------------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQ 243 (398)
T ss_pred -------------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCC
Confidence 23345688999999999999 99999999 89999999997776654 344556777876 55
Q ss_pred -CE--EEEEeCCCeEEEEeCCCCeE---E---EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeee
Q 009614 442 -NY--FISGSIDGKVRIWEVRRCQV---V---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (531)
Q Consensus 442 -~~--l~sgs~Dg~I~Iwd~~~~~~---~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~ 512 (531)
.+ ++.-..-+.|+.|++....- + +.......|++++.++||++++.|+.||.|-||++.+-+.++-
T Consensus 244 ~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~----- 318 (398)
T KOG0771|consen 244 ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY----- 318 (398)
T ss_pred ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe-----
Confidence 33 33333456677777654321 2 2334456899999999999999999999999999987666542
Q ss_pred cccccCCCceeeeEEEeeC
Q 009614 513 QGKKKLPGKRITGFQVVKI 531 (531)
Q Consensus 513 ~~~kk~~~~~It~l~f~p~ 531 (531)
.|+.|..-||+++|+|.
T Consensus 319 --vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 319 --VKEAHLGFVTGLTFSPD 335 (398)
T ss_pred --ehhhheeeeeeEEEcCC
Confidence 26778899999999984
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=5.3e-14 Score=131.55 Aligned_cols=205 Identities=14% Similarity=0.206 Sum_probs=165.5
Q ss_pred eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (531)
Q Consensus 235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 314 (531)
...+.|.+|++|+..+|++.....|.||...... .....++++.|...|++|.|+|..+.|++|+.|..-++|...
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3556677999999999999999999999887544 233556889999999999999999999999999999999873
Q ss_pred cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (531)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 394 (531)
.+.. -+|...+..|+...+++
T Consensus 86 ~~~~-----------------------------------------------------------WkptlvLlRiNrAAt~V 106 (361)
T KOG1523|consen 86 SGGT-----------------------------------------------------------WKPTLVLLRINRAATCV 106 (361)
T ss_pred CCCe-----------------------------------------------------------eccceeEEEeccceeeE
Confidence 3221 12344566688999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEE---e--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC--------
Q 009614 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRV---F--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-------- 460 (531)
Q Consensus 395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~---~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~-------- 460 (531)
.|+|.. .|++|+.-..|.||-++...--.+ + .+...|+++.|+| ++-++++|+.|++.|||...-
T Consensus 107 ~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpa 185 (361)
T KOG1523|consen 107 KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPA 185 (361)
T ss_pred eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCC
Confidence 999998 999999999999998875543311 1 2677899999999 899999999999999997531
Q ss_pred ----------CeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 461 ----------CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 461 ----------~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
++++ .+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 186 p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 186 PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 1122 233556789999999999999999999999999987664
No 181
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.58 E-value=5.5e-14 Score=137.96 Aligned_cols=184 Identities=16% Similarity=0.296 Sum_probs=152.6
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEccc-CCCEEEEEEccCCC-EEEEEeCCCc
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQ-YLASGGEDGT 307 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~-~Lasgs~Dg~ 307 (531)
.++.|...|.++.++..+.+||+++..|.|.|..+.++.... +|... ...|.-+.|+|..+ +|.+++++|.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt-------~f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT-------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc-------ceecCCCCeEEEeecccccceeeEeeccCCe
Confidence 355677888889999999999999999999999988655431 23322 34677999999666 5677899999
Q ss_pred EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (531)
|.+||+.....+ .+-...|
T Consensus 189 VtlwDv~g~sp~-------------------------------------------------------------~~~~~~H 207 (673)
T KOG4378|consen 189 VTLWDVQGMSPI-------------------------------------------------------------FHASEAH 207 (673)
T ss_pred EEEEeccCCCcc-------------------------------------------------------------cchhhhc
Confidence 999998654321 2223568
Q ss_pred CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe-EE
Q 009614 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VV 464 (531)
Q Consensus 388 ~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-~~ 464 (531)
..+...|+|+|.+ +|++.+.|+.|.+||++.......+....+.++++|.+ +|.+|++|...|.|..||++..+ ++
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCc
Confidence 9999999999988 89999999999999999988888888888999999999 99999999999999999999754 34
Q ss_pred -EecCCCCceEEEEEccCC
Q 009614 465 -DYTDIREIVSAVCYCPDG 482 (531)
Q Consensus 465 -~~~~~~~~v~~v~~spdg 482 (531)
....|...|++|+|.|..
T Consensus 287 ~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 287 AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEeeecccceeEEEeeecc
Confidence 578889999999998865
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3.7e-14 Score=141.51 Aligned_cols=227 Identities=17% Similarity=0.236 Sum_probs=153.8
Q ss_pred ccccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccc---cccceEEcccCCCEEEEEEccCCCEE
Q 009614 223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS---LYTGQEFLAHEGSILTMKFSLDGQYL 299 (531)
Q Consensus 223 ~w~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~---~~~~~~l~~H~~~I~~l~fspdg~~L 299 (531)
.-..++-++..|...|-|+++.+++..+.+|+-||.|+.|++......... ......+.||++.||.+++|+....|
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~L 411 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRL 411 (577)
T ss_pred cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccce
Confidence 334556678899999999999999999999999999999988733222211 12334688999999999999999999
Q ss_pred EEEeCCCcEEEEEcccCccccceecCCCCC--eeEEEeecCCcc-eeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDP--SCLYFTINHLSQ-LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (531)
Q Consensus 300 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (531)
++++.||++++|+...... ..+....... ..+.+....... +.........+... .....+.+++...
T Consensus 412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~-----ev~s~~~~~~s~~--- 482 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDM-----EVVSDLLIFESSA--- 482 (577)
T ss_pred eeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhh-----hhhhheeeccccC---
Confidence 9999999999999866554 3333222222 222222111000 00000000000000 0000001110000
Q ss_pred cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (531)
Q Consensus 377 ~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~ 454 (531)
.....-...+.-+.++|.+ ..+++..|+.|+++|..++..+.... |...++++++.| ++.+|++++.|+.|+
T Consensus 483 -----~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 483 -----SPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVR 556 (577)
T ss_pred -----CCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceee
Confidence 0001112357788889988 99999999999999999999987764 999999999999 999999999999999
Q ss_pred EEeCCCCeEE
Q 009614 455 IWEVRRCQVV 464 (531)
Q Consensus 455 Iwd~~~~~~~ 464 (531)
+|.+....++
T Consensus 557 l~kld~k~~~ 566 (577)
T KOG0642|consen 557 LWKLDVKTCV 566 (577)
T ss_pred hhhccchhee
Confidence 9999877665
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.56 E-value=1.1e-13 Score=129.47 Aligned_cols=223 Identities=20% Similarity=0.316 Sum_probs=149.4
Q ss_pred eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCC---CEEEEEEccCCCEEEEEeCCCcEEEEEc-ccCcc
Q 009614 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGEDGTVRVWKV-IEHER 318 (531)
Q Consensus 243 fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~Dg~I~iWd~-~~~~~ 318 (531)
-.|+..++|+.+.+.-|++||.-+++...+ +. ...|.. +-.+++|+|||.+|+.| ....|+++|+ +.|..
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraS--y~---~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRAS--YR---AYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD 192 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccc--hh---hhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence 357788999999999999999987765432 11 112332 34689999999999866 5678999999 44443
Q ss_pred ccceec-------CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614 319 LDGFDV-------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (531)
Q Consensus 319 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 391 (531)
...+.. ...-+.|+.+.+.....+..-.. +...-++.++. ..|+..+.+|.+.|
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY-------------~q~~giy~~~~------~~pl~llggh~gGv 253 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY-------------GQRVGIYNDDG------RRPLQLLGGHGGGV 253 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeecc-------------cceeeeEecCC------CCceeeecccCCCe
Confidence 222211 12223344444433222211110 00111222221 35788889999999
Q ss_pred eEEEEcCCC-eEEEEe-CCCcEEEEECCCC-eEEEEee-cCC-ceEEEEE--eeCCCCEEEEEeCCCeEEEEeCCC-Ce-
Q 009614 392 LDLSWSKNG-FLLSSS-ADKTVRLWQVGID-RCLRVFS-HNN-YVTSVAF--NPVDDNYFISGSIDGKVRIWEVRR-CQ- 462 (531)
Q Consensus 392 ~~l~~sp~~-~l~s~s-~Dg~V~lwdl~~~-~~l~~~~-h~~-~V~sv~f--sp~d~~~l~sgs~Dg~I~Iwd~~~-~~- 462 (531)
+.|.|.++| .|++|+ .|..|..||++.. .++..+. |.. .-..|.| .| ++++|++|+.||.|++||+.+ +.
T Consensus 254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCc
Confidence 999999999 888887 4778999999853 4444442 433 3334444 57 889999999999999999998 55
Q ss_pred EEEecCCCCceEEEEEccCCCEEEEEeCC
Q 009614 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (531)
Q Consensus 463 ~~~~~~~~~~v~~v~~spdg~~l~sgs~d 491 (531)
+..+..+...++.++++|--.++++++..
T Consensus 333 ~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccccccccccceecCcccceeeeccCc
Confidence 44577888899999999998888887743
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3e-13 Score=129.22 Aligned_cols=250 Identities=13% Similarity=0.140 Sum_probs=164.3
Q ss_pred ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEE-cccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
+..|.+.++++.|+.++++||+|+.|..++||++...-.... ..+.+.. ..|...|.|++|....++|++|+.+++|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-CCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 556778899999999999999999999999999874322111 1122222 23568999999999999999999999999
Q ss_pred EEEcccCccccceecCCC--CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614 310 VWKVIEHERLDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (531)
+.|+.+.+.+..+..... .+..+...+. . ...+..+.++.+.+|+.+.......++. +...
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--D--------------N~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~ 193 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPT--D--------------NTLIVVTRAKLVSFIDNRDRQNPISLVL-PANS 193 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCC--C--------------ceEEEEecCceEEEEeccCCCCCCceee-ecCC
Confidence 999998876655443322 2222222221 1 1123334455566666554332222222 1223
Q ss_pred CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC----------------------------------------------
Q 009614 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID---------------------------------------------- 419 (531)
Q Consensus 388 ~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~---------------------------------------------- 419 (531)
......+.|+|.. +|++.+..+-+-+||++..
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 3445566666655 6666666666677766421
Q ss_pred ---e-EEEEeecCC-------ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC------------------------CeEE
Q 009614 420 ---R-CLRVFSHNN-------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR------------------------CQVV 464 (531)
Q Consensus 420 ---~-~l~~~~h~~-------~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~------------------------~~~~ 464 (531)
+ .+..+.|+. .+.+++|- +...+++|+.+-.|+||.+.. +...
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 1 111122322 34556665 455699999999999998753 1123
Q ss_pred EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 465 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
.+.+|...+..|.|+|...+|++.+..+.++||.-.
T Consensus 352 VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 352 VLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EEecccccccceeecCCcceEeccchhhheeccccc
Confidence 478899999999999999999999999999999754
No 185
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.55 E-value=6.6e-12 Score=128.29 Aligned_cols=233 Identities=30% Similarity=0.458 Sum_probs=173.7
Q ss_pred eCCCC-eEEee-ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcccCcccc
Q 009614 244 KPGDH-ELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLD 320 (531)
Q Consensus 244 spdg~-~lasg-s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~ 320 (531)
++++. .++.. ..++.+.+|+... .......+..|...|..++|+|++.++++++. |+.+++|++.++....
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence 67777 44443 4499999999885 12233457889999999999999999999986 9999999999877776
Q ss_pred ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee-EeecCCCCeeEEEEcCC
Q 009614 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKN 399 (531)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~I~~l~~sp~ 399 (531)
.+..+...+.++.+.+... ......+.++.+.+|+.. ....+. .+.+|.... ...|+|+
T Consensus 193 ~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~ 252 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGG---------------LLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPD 252 (466)
T ss_pred eeccCCCceEEEEEcCCcc---------------eEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCC
Confidence 6666666666666663322 111223566666677444 223344 577888775 4489999
Q ss_pred C-eEEEEeCCCcEEEEECCCCeE-EEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe---cCCCCce
Q 009614 400 G-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY---TDIREIV 473 (531)
Q Consensus 400 ~-~l~s~s~Dg~V~lwdl~~~~~-l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~---~~~~~~v 473 (531)
+ .+++++.|+.+++|++..... +..+ .|...|.++.|+| ++..+++++.|+.+.+|+..+...... ..|...+
T Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (466)
T COG2319 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331 (466)
T ss_pred CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence 8 888999999999999986664 4444 5889999999999 888888899999999999998876643 2566679
Q ss_pred EEEEEccCCCEEEEE-eCCCcEEEEeCCCCe
Q 009614 474 SAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQ 503 (531)
Q Consensus 474 ~~v~~spdg~~l~sg-s~dg~I~iwd~~~~~ 503 (531)
..+.|.+++..++.+ ..|+.+++|++....
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999994343566665 678999999998877
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.3e-13 Score=146.01 Aligned_cols=242 Identities=14% Similarity=0.210 Sum_probs=168.5
Q ss_pred CCCeEEeeecCCeEEEEeCCCCc---cc-ccccccceE-EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQS---RE-LSSLYTGQE-FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~---~~-~~~~~~~~~-l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 320 (531)
|..++++|+.||.|+||+-.... .+ ++.....+. +.+-.+.=.-+.|.....+|+++|+-..|+|||........
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 44578899999999999654322 11 111111111 11122222456888877778888888999999998877666
Q ss_pred ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC--eeEEEEcC
Q 009614 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE--VLDLSWSK 398 (531)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--I~~l~~sp 398 (531)
.++..... ++ .+ ...........+.+-.|+.+.+|+.+.-.. ..++...+.|+.. |..+.+.+
T Consensus 1202 diP~~s~t--~v----------Ta--LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1202 DIPYGSST--LV----------TA--LSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred ecccCCCc--cc----------ee--ecccccCCceEEEeecCCceEEeecccCCc-cccceeecccCCcccceeEEeec
Confidence 55443221 11 11 111111233446677888899998776443 2567788889887 99999999
Q ss_pred CC--eEEEEeCCCcEEEEECCCCeEEEEe---ec---CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe----
Q 009614 399 NG--FLLSSSADKTVRLWQVGIDRCLRVF---SH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY---- 466 (531)
Q Consensus 399 ~~--~l~s~s~Dg~V~lwdl~~~~~l~~~---~h---~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~---- 466 (531)
+| .|++|+.||.|++||++.......+ .| .+.++++..|+ +..++|+|+. +.|+||++...++..+
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCc
Confidence 88 7999999999999999985322222 22 33599999999 8999999998 9999999987654322
Q ss_pred ---cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614 467 ---TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (531)
Q Consensus 467 ---~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l 504 (531)
......+.+++|||.--++|+|..|..|.||....+++
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 22345689999999999999999999999998876543
No 187
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.55 E-value=9.2e-13 Score=141.86 Aligned_cols=278 Identities=11% Similarity=0.088 Sum_probs=176.2
Q ss_pred hcccccccccc---ceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC
Q 009614 220 VKRGWLKKLGA---MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295 (531)
Q Consensus 220 ~~~~w~~~~~~---~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd 295 (531)
..++|.-+-.. +..|...+..++.++ ++.++++|+.||+|+||+..+............++.--...+.++...+.
T Consensus 1030 p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1030 PPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred CCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence 33455443322 333444555555555 45999999999999999999776664455555556556788999999999
Q ss_pred CCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEe-ecCCcceeeeeccccccccccccccCCCceEEEeCCccc
Q 009614 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (531)
Q Consensus 296 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (531)
++.+|.++.||.|++.++......+... .+.... ....+.++.+............+..+..+.++.|+.+..
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVA------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred CCeEEEEcCCCeEEEEEcccccccccee------eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 9999999999999999987631110000 000000 000001111110000000112344555667788887653
Q ss_pred cccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCC--CEEEEEe-
Q 009614 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDD--NYFISGS- 448 (531)
Q Consensus 375 ~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~--~~l~sgs- 448 (531)
.... ........|.|++++.+|.+ .++.|+..|.+.+||++-+.++..+. +..+++.+..+|..+ ...++++
T Consensus 1184 ~~~w--~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAW--RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hhHH--hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 2211 11223346789999999998 99999999999999999999998886 446788888887544 4555544
Q ss_pred -CCCeEEEEeCCCCeEEE--ecC------------------CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614 449 -IDGKVRIWEVRRCQVVD--YTD------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 449 -~Dg~I~Iwd~~~~~~~~--~~~------------------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~ 505 (531)
..+.|.+|++.++.... +.. +.-.....++...+..+++|+.|+.|+.||....+..
T Consensus 1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 47789999999875332 222 1111222333444567899999999999998776554
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.8e-13 Score=139.57 Aligned_cols=216 Identities=14% Similarity=0.164 Sum_probs=142.8
Q ss_pred ceeeeccccceeeeCCCCeEEeeecC---CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCC
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDG 306 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~d---g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg 306 (531)
+..+...+.+..|+|||+.|+..+.+ ..|++||+..+.... ...+.+| ...++|+|||+.|+.++ .+|
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-----l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-----VASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-----EecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 34444566778999999999887643 479999987543221 1123334 34689999999888765 688
Q ss_pred cEEEEEc--ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614 307 TVRVWKV--IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (531)
Q Consensus 307 ~I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
.+.||.+ .++. ...+
T Consensus 271 ~~~Iy~~d~~~~~---------------------------------------------------------------~~~l 287 (429)
T PRK01742 271 VLNIYVMGANGGT---------------------------------------------------------------PSQL 287 (429)
T ss_pred cEEEEEEECCCCC---------------------------------------------------------------eEee
Confidence 7777654 2221 1122
Q ss_pred ecCCCCeeEEEEcCCC-eEEEE-eCCCcEEEEECCCC-eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614 385 QGHSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~-~l~s~-s~Dg~V~lwdl~~~-~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~ 461 (531)
..+...+....|+|+| .|+.+ ..++...||++... .....+.+.. .+..|+| ++++|+..+.++ +.+||+.++
T Consensus 288 t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g 363 (429)
T PRK01742 288 TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSG 363 (429)
T ss_pred ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCC
Confidence 3345567789999999 55544 46788888876532 2223334443 4678999 999998887765 566999988
Q ss_pred eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC--CCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~--~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
+...+.... ....+.|+|||++|+.++.+|.+.+|.+. +|+.++++. .+...+...+|+|
T Consensus 364 ~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--------~~~g~~~~p~wsp 425 (429)
T PRK01742 364 STEVLSSTF-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--------GSDGQVKFPAWSP 425 (429)
T ss_pred CeEEecCCC-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--------CCCCCCCCcccCC
Confidence 765443222 34568899999999999999988888753 455554432 1223556677776
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6e-13 Score=141.19 Aligned_cols=277 Identities=14% Similarity=0.177 Sum_probs=171.5
Q ss_pred ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEccc
Q 009614 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~ 315 (531)
...+.|+|-...++++.....|.|||..+...- ..+... ......|+.|.+-. |..+|++|+.||.|+||+-..
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-~~F~n~---~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-NGFDNG---AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCcee-ccccCC---CCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 334789999999999998899999999876542 111111 11245788888854 556899999999999997533
Q ss_pred Cc-cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeE
Q 009614 316 HE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLD 393 (531)
Q Consensus 316 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~ 393 (531)
.. ...++-..-.....+.......+.++.+....+ ..+..+.-..+.+|+...-.. ++.+ .+...-|+.
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-----~Ll~tGd~r~IRIWDa~~E~~----~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-----HLLVTGDVRSIRIWDAHKEQV----VADIPYGSSTLVTA 1213 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCC-----eEEecCCeeEEEEEeccccee----EeecccCCCcccee
Confidence 22 111111111111111111122222222222221 223344456678888755322 2221 223445666
Q ss_pred EEEcCC-C-eEEEEeCCCcEEEEECCCCeE---EEEee-cCCc--eEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 009614 394 LSWSKN-G-FLLSSSADKTVRLWQVGIDRC---LRVFS-HNNY--VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (531)
Q Consensus 394 l~~sp~-~-~l~s~s~Dg~V~lwdl~~~~~---l~~~~-h~~~--V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~- 464 (531)
+.-+.. | .+++|..||.|++||.+.... +..++ |+.. |..+.+.+..-..|++|+.||.|++||++.....
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence 654433 4 999999999999999986543 34443 7766 9999998833346999999999999999984322
Q ss_pred --EecCC---CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 465 --DYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 465 --~~~~~---~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
....| ....+++..|++...+|+|+. +.|+||++...++ ..++.. .+--......+..+.|.|
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n-~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYN-PGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccC-cccccCcCCCcceeeecc
Confidence 22222 235899999999999999998 9999999985544 222211 110112224558888877
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.3e-12 Score=120.68 Aligned_cols=117 Identities=19% Similarity=0.458 Sum_probs=94.2
Q ss_pred CCCeeEEEEcCCC-eE--EEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCCC
Q 009614 388 SSEVLDLSWSKNG-FL--LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRC 461 (531)
Q Consensus 388 ~~~I~~l~~sp~~-~l--~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~~ 461 (531)
.++|.+++|+|+| .| +.|..++.|.+||++ ++.+..+. ...++.|.|+| +|++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 4579999999999 54 345577899999996 56666664 56788999999 99999998754 67999999999
Q ss_pred eEEEecCCCCceEEEEEccCCCEEEEEeC------CCcEEEEeCCCCeEEEEee
Q 009614 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~~~~l~~~~~ 509 (531)
+.+....|.. ++.++|+|||++|++++. |+.++||+.. |+++.+..
T Consensus 136 ~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 136 KKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 8887666554 789999999999999875 7889999996 66665443
No 191
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=4.3e-13 Score=133.14 Aligned_cols=226 Identities=18% Similarity=0.282 Sum_probs=157.5
Q ss_pred eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCccccc
Q 009614 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDG 321 (531)
Q Consensus 243 fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~ 321 (531)
-.|.+--++.|-.-|.|.+.+... .+++.++... ..-.+..|+|++|-|. ...++.+-.+|.+.++|..-..
T Consensus 181 a~~~g~dllIGf~tGqvq~idp~~--~~~sklfne~-r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~---- 253 (636)
T KOG2394|consen 181 ATPKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEE-RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC---- 253 (636)
T ss_pred cCCCCcceEEeeccCceEEecchh--hHHHHhhhhc-ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc----
Confidence 356677788888889999988765 2333322221 1123478999999994 4466667789999999872110
Q ss_pred eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-
Q 009614 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400 (531)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~- 400 (531)
....+ .+........+ .+..+-... ...|+..+.--.+.|+.++|+|+|
T Consensus 254 ---~~t~p---~~~~~k~~~~f---------------------~i~t~ksk~---~rNPv~~w~~~~g~in~f~FS~DG~ 303 (636)
T KOG2394|consen 254 ---GATAP---SYQALKDGDQF---------------------AILTSKSKK---TRNPVARWHIGEGSINEFAFSPDGK 303 (636)
T ss_pred ---cCCCC---cccccCCCCee---------------------EEeeeeccc---cCCccceeEeccccccceeEcCCCc
Confidence 00000 00000000000 111111000 113455555556799999999999
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEE
Q 009614 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCY 478 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~ 478 (531)
+|++.+.||.+||||..+.+.+..+. .-+...|++|+| |++||++|+.|.-|.||.+..++++. -.+|+.+|+.|+|
T Consensus 304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence 99999999999999999888777665 457789999999 99999999999999999999999985 6899999999999
Q ss_pred cc-------------------------------C----C-------------CEEEEEeCCCcEEEEeCCCCeEEE
Q 009614 479 CP-------------------------------D----G-------------KGGIVGTMTGNCRFYDIKDNQLYQ 506 (531)
Q Consensus 479 sp-------------------------------d----g-------------~~l~sgs~dg~I~iwd~~~~~l~~ 506 (531)
.| + + -.+.+.+.|-.+.+||+..-.+..
T Consensus 383 Dpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 383 DPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 83 0 1 136677889999999998776655
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2e-13 Score=130.47 Aligned_cols=168 Identities=26% Similarity=0.334 Sum_probs=139.6
Q ss_pred eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (531)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (531)
+.+.+|.+.|++|.|+.++++|++|+.|..+++|++...-..+.
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~------------------------------------ 93 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT------------------------------------ 93 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC------------------------------------
Confidence 45789999999999999999999999999999999854321100
Q ss_pred cccCCCceEEEeCCccccccCcceeEee-cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCC---ceE
Q 009614 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN---YVT 432 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~---~V~ 432 (531)
.+|+.... .|...|.||+|.-.+ .+++|..+++|.+.|+.+.+.+.++.|.. .|+
T Consensus 94 --------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY 153 (609)
T KOG4227|consen 94 --------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVY 153 (609)
T ss_pred --------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccccee
Confidence 12333332 366899999999877 99999999999999999999999998776 999
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEeCCCCe----EEEecCCCCceEEEEEccCC-CEEEEEeCCCcEEEEeCCCC
Q 009614 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 433 sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~----~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~ 502 (531)
.+..+| ..+.|++.+.++.|.+||.+..+ ++...........+.|+|.. .+|++++..|-+.+||.+..
T Consensus 154 ~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 154 HMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 999999 68999999999999999998754 44556667788999999954 67788999999999998753
No 193
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.3e-13 Score=128.35 Aligned_cols=205 Identities=16% Similarity=0.227 Sum_probs=147.6
Q ss_pred ceeeeccccceeeeC--CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeC---
Q 009614 231 MARIIDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGE--- 304 (531)
Q Consensus 231 ~~~~~~~~~s~~fsp--dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~--- 304 (531)
+..+...++.+.|.. ....+.+++.||+|++||++....... ..+.+|. .+-.+++.+..++.+++|..
T Consensus 66 fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~-----~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 66 FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR-----ISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh-----eeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 444445555666665 456788999999999999996554322 2344555 46777887777888888753
Q ss_pred -CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614 305 -DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (531)
Q Consensus 305 -Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (531)
|-.|.+||++..+... -.-
T Consensus 141 s~A~v~lwDvR~~qq~l------------------------------------------------------------~~~ 160 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLL------------------------------------------------------------RQL 160 (376)
T ss_pred CceEEEEEEeccccchh------------------------------------------------------------hhh
Confidence 6778999987665310 111
Q ss_pred eecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC----eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614 384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (531)
Q Consensus 384 ~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~----~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd 457 (531)
...|...|++|.|+|+. +|++|+.||.|.|||+... ..+.++.|...|.++.|....-+.|.+-+..+...+|+
T Consensus 161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 35699999999999987 9999999999999999754 34566778888999999873334677778888899998
Q ss_pred CCCCeEE--------------------------------------------------------------Eec-CCCCceE
Q 009614 458 VRRCQVV--------------------------------------------------------------DYT-DIREIVS 474 (531)
Q Consensus 458 ~~~~~~~--------------------------------------------------------------~~~-~~~~~v~ 474 (531)
+..+... .+. +|...|.
T Consensus 241 le~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR 320 (376)
T KOG1188|consen 241 LEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR 320 (376)
T ss_pred ccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHH
Confidence 7643200 011 1333456
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 475 AVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 475 ~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
++.|...+..+.+|+.||.+.+|...
T Consensus 321 ~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 321 DILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred HHhhhcccceeeccCCCceEEEEecC
Confidence 66676677899999999999999853
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=2.2e-11 Score=116.28 Aligned_cols=218 Identities=16% Similarity=0.231 Sum_probs=156.4
Q ss_pred CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCC-CCeeEEE
Q 009614 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYF 334 (531)
Q Consensus 256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~-~~~~~~~ 334 (531)
...+++.+.++...... . -...+|.+|.++. +.|+.+-.+. |.|||+.+.+.+.++..... .....++
T Consensus 67 pr~Lkv~~~Kk~~~ICe------~--~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICE------I--FFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCAL 135 (391)
T ss_pred CceEEEEEcccCceEEE------E--ecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEee
Confidence 35688888875432211 1 1346799999974 4577776654 99999999999998876633 3335556
Q ss_pred eecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCc-EE
Q 009614 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VR 412 (531)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~-V~ 412 (531)
+++..+...+.. .....+.+++|+.... +++..+..|.+.+-+|+|+++| +|||++..|+ ||
T Consensus 136 S~n~~n~ylAyp------------~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR 199 (391)
T KOG2110|consen 136 SPNNANCYLAYP------------GSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR 199 (391)
T ss_pred ccCCCCceEEec------------CCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence 665544433332 1223667888876553 5678889999999999999999 9999999998 78
Q ss_pred EEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-------------------------
Q 009614 413 LWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV------------------------- 464 (531)
Q Consensus 413 lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~------------------------- 464 (531)
|+.+.+|+.+..|+ ....|.+++|+| ++.+|++.+..++|+||.+.....-
T Consensus 200 Vf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps 278 (391)
T KOG2110|consen 200 VFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPS 278 (391)
T ss_pred EEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcch
Confidence 99999999999997 456789999999 9999999999999999988642200
Q ss_pred -------------EecCCCCce-EEEEEc--cCCCEEEEEeCCCcEEEEeCCC
Q 009614 465 -------------DYTDIREIV-SAVCYC--PDGKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 465 -------------~~~~~~~~v-~~v~~s--pdg~~l~sgs~dg~I~iwd~~~ 501 (531)
......... ..+.+. +....+.+++.||.++.|.+.-
T Consensus 279 ~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 279 QVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred hhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 000000111 222333 4678899999999999998753
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=6.7e-12 Score=119.72 Aligned_cols=233 Identities=14% Similarity=0.192 Sum_probs=158.8
Q ss_pred cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC--CcEEEEEcccC
Q 009614 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTVRVWKVIEH 316 (531)
Q Consensus 239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D--g~I~iWd~~~~ 316 (531)
+...|..+...|..|+.+| .+++......+-. ......-.|.-+-|+.. ++|..+.+ +.+++.+++.+
T Consensus 9 ~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~-------~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF-------SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred eeeeeccceeEEEccCCCc-eeEEecCchHHhh-------cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 3456888999999999988 5777766433311 11112335666777644 55555544 34888888776
Q ss_pred ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (531)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 396 (531)
..+..+..+.. .+....+....++++ ...+++|+.+...+... +.....+...+..++.
T Consensus 79 ~~ICe~~fpt~---IL~VrmNr~RLvV~L-----------------ee~IyIydI~~MklLhT-I~t~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 79 TTICEIFFPTS---ILAVRMNRKRLVVCL-----------------EESIYIYDIKDMKLLHT-IETTPPNPKGLCALSP 137 (391)
T ss_pred ceEEEEecCCc---eEEEEEccceEEEEE-----------------cccEEEEecccceeehh-hhccCCCccceEeecc
Confidence 65554432221 222222222222211 22377787776554321 1122235566777777
Q ss_pred cCCC-eEEEE--eCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCe-EEEEeCCCCeEEE-ecC--
Q 009614 397 SKNG-FLLSS--SADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVD-YTD-- 468 (531)
Q Consensus 397 sp~~-~l~s~--s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~-I~Iwd~~~~~~~~-~~~-- 468 (531)
++.+ +|+-- ...|.|.|||+.+-+.+..+. |.+.+.|++|+| +|.+||++|..|+ |||+.+.+++.+. +..
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~ 216 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT 216 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence 7766 77643 346889999999999988886 999999999999 9999999999987 7999999998774 322
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 469 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
....|.+++|+||+++|++.+..++|+||.+....
T Consensus 217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 24568999999999999999999999999987644
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.2e-14 Score=139.69 Aligned_cols=163 Identities=26% Similarity=0.445 Sum_probs=129.3
Q ss_pred cceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccc
Q 009614 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (531)
Q Consensus 276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (531)
..+++.||++-|+|+.|+.+|.+|++|++|-.+.|||.-..+.+..
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs---------------------------------- 87 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS---------------------------------- 87 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee----------------------------------
Confidence 4467899999999999999999999999999999999864432211
Q ss_pred cccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCC----------CeEE
Q 009614 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGI----------DRCL 422 (531)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~----------~~~l 422 (531)
.-.+|...|.++.|-|.. .+++|..|+.|+++|+.. ....
T Consensus 88 ---------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~ 140 (758)
T KOG1310|consen 88 ---------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETT 140 (758)
T ss_pred ---------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchh
Confidence 125799999999999953 899999999999999974 2233
Q ss_pred EEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-----------EecCCCCceEEEEEccC-CCEEEEEe
Q 009614 423 RVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----------DYTDIREIVSAVCYCPD-GKGGIVGT 489 (531)
Q Consensus 423 ~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-----------~~~~~~~~v~~v~~spd-g~~l~sgs 489 (531)
..+. |...|..|+-.|...+.|.+++.||+|+-+|++....- .+...--...++..+|. ..+|++|+
T Consensus 141 ~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGg 220 (758)
T KOG1310|consen 141 RCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGG 220 (758)
T ss_pred hhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecC
Confidence 3333 88999999999955699999999999999999873211 11222234577888885 46889999
Q ss_pred CCCcEEEEeC
Q 009614 490 MTGNCRFYDI 499 (531)
Q Consensus 490 ~dg~I~iwd~ 499 (531)
.|-..++||.
T Consensus 221 sdpfarLYD~ 230 (758)
T KOG1310|consen 221 SDPFARLYDR 230 (758)
T ss_pred CCchhhhhhh
Confidence 9999999994
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.49 E-value=9.3e-13 Score=123.28 Aligned_cols=159 Identities=18% Similarity=0.298 Sum_probs=134.0
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCC
Q 009614 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (531)
Q Consensus 283 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (531)
-..+|+|.+|++|+..+|.+.....|.||.....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 357899999999999999999999999998754431
Q ss_pred CceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEEC-CCCeE---EEEeecCCceEEEEEe
Q 009614 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRC---LRVFSHNNYVTSVAFN 437 (531)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl-~~~~~---l~~~~h~~~V~sv~fs 437 (531)
-++.+++..|...|+.|.|+|.. .|++|+.|..-++|.. ..++. +..++++..+++|.|+
T Consensus 45 ---------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 45 ---------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS 109 (361)
T ss_pred ---------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence 13467788999999999999998 9999999999999998 44443 3344699999999999
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCeEE-----EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614 438 PVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 438 p~d~~~l~sgs~Dg~I~Iwd~~~~~~~-----~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~ 501 (531)
| .++.||+|+....|.||-.....-- .-..+...|+++.|+|++-+|++|+.|+.+|+|..--
T Consensus 110 P-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI 177 (361)
T KOG1523|consen 110 P-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI 177 (361)
T ss_pred C-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEee
Confidence 9 9999999999999999988764422 1344567899999999999999999999999998643
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4.5e-12 Score=132.93 Aligned_cols=280 Identities=18% Similarity=0.205 Sum_probs=184.4
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC---CEEEEEeCCCcEEEEEcccCc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVWKVIEHE 317 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~iWd~~~~~ 317 (531)
..|++|+++++... ...|+||...++... ..+.+|..+++.+.+.|.. .++++++.||.|++||...+.
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i-------~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECI-------TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhh-------hhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 57999999887775 578999998865543 3588999999999998843 478899999999999999998
Q ss_pred cccceecCCCCCeeEEEeecC-------------Ccceeeeecccc--------------cc--------ccccccccCC
Q 009614 318 RLDGFDVQDTDPSCLYFTINH-------------LSQLIPIDVDKE--------------KI--------DKTKSLRKSS 362 (531)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--------------~~--------~~~~~~~~~~ 362 (531)
.++.+........... .+.. ...+........ .. ........+.
T Consensus 94 Llkt~~~~~~v~~~~~-~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g 172 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVY-KPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG 172 (792)
T ss_pred EEEEEecCCceeEEEe-chhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc
Confidence 8877755433221111 0000 000000000000 00 0000111111
Q ss_pred CceEEEeCCccccc--cC--c---ceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC----CeEEEEee-cCC
Q 009614 363 DLTCVVLPPKVFRL--LE--K---PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----DRCLRVFS-HNN 429 (531)
Q Consensus 363 ~~~~~~~~~~~~~~--~~--~---~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~----~~~l~~~~-h~~ 429 (531)
....++.....+.. .. + ....-..|...+++.++||++ +++++..||.|.+|.--. ......+. |..
T Consensus 173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence 22222211111111 00 0 011113366778999999999 999999999999996322 12233444 889
Q ss_pred ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 430 ~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
.|++++|++ +|.+|++|+..|.+.+|.+.+++..-+.....+|..+.++||+.+.++...|+.|++-.+.+..+...++
T Consensus 253 ~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs 331 (792)
T KOG1963|consen 253 EVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS 331 (792)
T ss_pred ccceeEEec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence 999999999 9999999999999999999999866677888999999999999999999999999999987776665554
Q ss_pred eeecc---cccCCCceeeeEEEee
Q 009614 510 ICLQG---KKKLPGKRITGFQVVK 530 (531)
Q Consensus 510 ~~~~~---~kk~~~~~It~l~f~p 530 (531)
..... .|+-+..-.+++.+.|
T Consensus 332 gi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 332 GIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred CccCCCccccccccccceeEEEcC
Confidence 22111 1222344556666655
No 199
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.4e-12 Score=123.60 Aligned_cols=204 Identities=15% Similarity=0.252 Sum_probs=152.4
Q ss_pred CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC-EEEEEeCC--CcEEEEEcccCccccceec
Q 009614 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGED--GTVRVWKVIEHERLDGFDV 324 (531)
Q Consensus 248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~D--g~I~iWd~~~~~~~~~~~~ 324 (531)
..|++|-.+|.+.+|..+.+...-+.+ ..+..| ..+..|.-++... .+|+||.. ..++|||+.+.+.+..-..
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l---~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN 191 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKL---IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN 191 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccc---eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC
Confidence 456777889999999988443211111 123333 5677777777544 55668888 8899999987754322211
Q ss_pred CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC--C-e
Q 009614 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-F 401 (531)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~--~-~ 401 (531)
...... +..+ .-+++++.|-+. . .
T Consensus 192 vpnD~L--------------------------------~LrV---------------------PvW~tdi~Fl~g~~~~~ 218 (412)
T KOG3881|consen 192 VPNDRL--------------------------------GLRV---------------------PVWITDIRFLEGSPNYK 218 (412)
T ss_pred CCCccc--------------------------------ccee---------------------eeeeccceecCCCCCce
Confidence 111000 0011 124566777765 4 9
Q ss_pred EEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCceEEEE
Q 009614 402 LLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVC 477 (531)
Q Consensus 402 l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~~~~~~v~~v~ 477 (531)
|++++.-+.||+||.+.+ +++..|. ...+++++...| +++++++|..-|.+..||++++++. .+.+..+.|++|.
T Consensus 219 fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih 297 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH 297 (412)
T ss_pred EEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEE
Confidence 999999999999999864 5677776 678899999999 9999999999999999999999987 3788999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 478 ~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
.+|.+++|++++.|..|||+|+++.+++.+..
T Consensus 298 ~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 298 CHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred EcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 99999999999999999999999988876554
No 200
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.2e-11 Score=128.89 Aligned_cols=214 Identities=12% Similarity=0.076 Sum_probs=138.2
Q ss_pred eccccceeeeCCCCeEEeee---cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCC--cE
Q 009614 235 IDRHGSATLKPGDHELTLGQ---RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDG--TV 308 (531)
Q Consensus 235 ~~~~~s~~fspdg~~lasgs---~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg--~I 308 (531)
...+.+.+|+|||+.|+..+ ....|.+|++..+... .+....+.+..+.|+|||+.|+.. +.+| .|
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--------~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--------EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 34455789999999998643 3457999998754422 112223334568999999988765 4455 47
Q ss_pred EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
.+||+.+++.. .+..+.
T Consensus 270 ~~~d~~tg~~~---------------------------------------------------------------~lt~~~ 286 (429)
T PRK03629 270 YVMDLASGQIR---------------------------------------------------------------QVTDGR 286 (429)
T ss_pred EEEECCCCCEE---------------------------------------------------------------EccCCC
Confidence 77887654311 111223
Q ss_pred CCeeEEEEcCCC-eEEEEeCC-Cc--EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCCC
Q 009614 389 SEVLDLSWSKNG-FLLSSSAD-KT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRC 461 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~D-g~--V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~~ 461 (531)
..+....|+|+| .|+..+.+ +. |.++|+.++.......+........|+| ++++|+..+.+ ..|.+||+.++
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCC
Confidence 346678999999 67666643 44 4555777766544433455567889999 89888776543 35889999988
Q ss_pred eEEEecCCCCceEEEEEccCCCEEEEEeCCCc---EEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN---CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~---I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
+...+... .......|+|||++|+.++.++. +.++++..+. ...+. .+...+...+|+|
T Consensus 366 ~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~--------~~~~~~~~p~Wsp 427 (429)
T PRK03629 366 GVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP--------ATDGQVKFPAWSP 427 (429)
T ss_pred CeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECc--------cCCCCcCCcccCC
Confidence 76655432 23456789999999999988765 6777875433 33222 1224566677776
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=8.8e-11 Score=118.47 Aligned_cols=245 Identities=12% Similarity=0.135 Sum_probs=146.9
Q ss_pred ccceeeeCCCCeEEee-ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccc
Q 009614 238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIE 315 (531)
Q Consensus 238 ~~s~~fspdg~~lasg-s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~ 315 (531)
...++++|++++|+++ ..++.|.+|++.... .+. ...... ..+....|+|+|+|++|++++. ++.|.+|++.+
T Consensus 37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~l~---~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-ALT---FAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CccEEECCCCCEEEEEECCCCcEEEEEECCCC-ceE---Eeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 4458999999988765 458899999986321 111 111111 2335678999999999888764 88999999964
Q ss_pred Cccc-cceec--CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc-ccCc--ceeEeecCCC
Q 009614 316 HERL-DGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-LLEK--PLHEFQGHSS 389 (531)
Q Consensus 316 ~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~h~~ 389 (531)
.... ..... ....+..+.+.++.. .+ .+....+..+.+|+..... +... ...... ...
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~-~l--------------~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~ 175 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNR-TL--------------WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGA 175 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCC-EE--------------EEeeCCCCEEEEEEECCCCcccccCCCceecC-CCC
Confidence 3221 11111 111122222322221 11 1223344566666654311 1100 001111 123
Q ss_pred CeeEEEEcCCC-eEEEEeC-CCcEEEEECCC--Ce--EEEEee-------cCCceEEEEEeeCCCCEEEEEe-CCCeEEE
Q 009614 390 EVLDLSWSKNG-FLLSSSA-DKTVRLWQVGI--DR--CLRVFS-------HNNYVTSVAFNPVDDNYFISGS-IDGKVRI 455 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s~-Dg~V~lwdl~~--~~--~l~~~~-------h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~I 455 (531)
....++|+|++ +++++.. +++|.+|++.. ++ .+..+. +......+.++| ++++++++. .++.|.+
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISV 254 (330)
T ss_pred CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEE
Confidence 46789999999 6766655 89999999973 32 233332 112334688999 899888875 4789999
Q ss_pred EeCCCCe----EEEecCCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCC--CCeE
Q 009614 456 WEVRRCQ----VVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--DNQL 504 (531)
Q Consensus 456 wd~~~~~----~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~--~~~l 504 (531)
|++.... .+...........+.++|||++|+++.. +++|.+|++. ++.+
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 9986432 2222222235567999999999998776 8899999874 4554
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.7e-11 Score=128.14 Aligned_cols=199 Identities=17% Similarity=0.197 Sum_probs=133.0
Q ss_pred ceeeeccccceeeeCCCCeEEeeec---CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCCC
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG 306 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~---dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg 306 (531)
+..+...+.+.+|+|||+.|+..+. ...|.+|++..+... .+..+.+...+++|+|||+.|+ +.+.+|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--------LVASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--------EeccCCCCccCceECCCCCEEEEEEeCCC
Confidence 3334445667899999999987663 346999998754432 2333444556789999999775 445555
Q ss_pred --cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614 307 --TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (531)
Q Consensus 307 --~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
.|.+||+.+++. ..+
T Consensus 271 ~~~Iy~~d~~~g~~---------------------------------------------------------------~~l 287 (433)
T PRK04922 271 NPEIYVMDLGSRQL---------------------------------------------------------------TRL 287 (433)
T ss_pred CceEEEEECCCCCe---------------------------------------------------------------EEC
Confidence 488888765531 111
Q ss_pred ecCCCCeeEEEEcCCC-eEEEEeC-CCc--EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC---eEEEEe
Q 009614 385 QGHSSEVLDLSWSKNG-FLLSSSA-DKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWE 457 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~-~l~s~s~-Dg~--V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg---~I~Iwd 457 (531)
..+.......+|+|+| .|+.++. ++. |.++|+.+++......+......++|+| ++++|+..+.++ .|.+||
T Consensus 288 t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d 366 (433)
T PRK04922 288 TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMD 366 (433)
T ss_pred ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEE
Confidence 2233334567899999 6666553 444 6777777776544433445566789999 999888765443 699999
Q ss_pred CCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC---CcEEEEeCCCC
Q 009614 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDN 502 (531)
Q Consensus 458 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~~~ 502 (531)
+.+++...+.. ........|+|||++|+..+.+ +.|.++++..+
T Consensus 367 ~~~g~~~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 367 LSTGSVRTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCCCeEECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 98887665443 2245567999999998877653 35788888643
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.44 E-value=6.9e-12 Score=131.11 Aligned_cols=229 Identities=18% Similarity=0.225 Sum_probs=152.8
Q ss_pred CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCccc--cceecCCCCCeeEE
Q 009614 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERL--DGFDVQDTDPSCLY 333 (531)
Q Consensus 257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~~~ 333 (531)
+.+.||+++.....- ....-...|.+++|+| +..+||.|..+|.|.+||+..+... ..+..
T Consensus 222 ~~~~vW~~~~p~~Pe-------~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--------- 285 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE-------LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--------- 285 (555)
T ss_pred ceEEEEecCCCCCce-------EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc---------
Confidence 479999998652211 1223467899999999 6778888999999999999877652 11111
Q ss_pred EeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC-c-ceeEee------cCCCCeeEEEEcCCC--eEE
Q 009614 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-K-PLHEFQ------GHSSEVLDLSWSKNG--FLL 403 (531)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~------~h~~~I~~l~~sp~~--~l~ 403 (531)
....+...+..+.+...... ...++.+.|+.+..|+.+...... . +..... .....+++++|.+.. .++
T Consensus 286 ~~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 286 LEVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred ccccCCcCeEEEEEeccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 11111122222222222223 445667779999999776654421 1 111111 223468999999876 999
Q ss_pred EEeCCCcEEEEECC---CCe-----EEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC-CCeEE-EecCCCCc
Q 009614 404 SSSADKTVRLWQVG---IDR-----CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVV-DYTDIREI 472 (531)
Q Consensus 404 s~s~Dg~V~lwdl~---~~~-----~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~-~~~~~-~~~~~~~~ 472 (531)
.|+.+|.|.-=... ... .+..+ .|.++|+++.++|.....|++++ |.+|+||... ...++ .+..+...
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~ 443 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDY 443 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccce
Confidence 99999998773322 222 11122 38999999999996666777766 9999999987 44444 56667777
Q ss_pred eEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe
Q 009614 473 VSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 473 v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~ 503 (531)
|++++|||-- ..++++..||.|.|||+....
T Consensus 444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 9999999976 456778889999999996543
No 204
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.44 E-value=1.1e-11 Score=114.52 Aligned_cols=151 Identities=21% Similarity=0.445 Sum_probs=107.3
Q ss_pred eeeeCCCCeEEeeec----------CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE--eCCCcE
Q 009614 241 ATLKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG--GEDGTV 308 (531)
Q Consensus 241 ~~fspdg~~lasgs~----------dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg--s~Dg~I 308 (531)
+.|+|+|.+|++-.. -+...+|.++........+ .+ .+.++|.+++|+|+|+.||.. ..++.|
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i----~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI----EL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee----ec-cCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 679999988865322 2345556554332222111 11 234579999999999987654 357799
Q ss_pred EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
.+||+. ++. +..+ +.
T Consensus 86 ~lyd~~-~~~--------------------------------------------------------------i~~~--~~ 100 (194)
T PF08662_consen 86 TLYDVK-GKK--------------------------------------------------------------IFSF--GT 100 (194)
T ss_pred EEEcCc-ccE--------------------------------------------------------------eEee--cC
Confidence 999984 211 2222 24
Q ss_pred CCeeEEEEcCCC-eEEEEeC---CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC------CCeEEEEeC
Q 009614 389 SEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEV 458 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~---Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~------Dg~I~Iwd~ 458 (531)
..++.|.|+|+| +|++++. .|.|.+||+++.+.+..+.|.. ++.++|+| +|++|+++.. |..++||+.
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcC-CCCEEEEEEeccceeccccEEEEEe
Confidence 567889999999 7777764 4679999999999998888765 78999999 9999999864 788999998
Q ss_pred CCCeE
Q 009614 459 RRCQV 463 (531)
Q Consensus 459 ~~~~~ 463 (531)
....+
T Consensus 179 ~G~~l 183 (194)
T PF08662_consen 179 QGRLL 183 (194)
T ss_pred cCeEe
Confidence 64433
No 205
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.44 E-value=5.2e-12 Score=116.79 Aligned_cols=196 Identities=13% Similarity=0.231 Sum_probs=133.5
Q ss_pred eeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcccCcc
Q 009614 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHER 318 (531)
Q Consensus 241 ~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~ 318 (531)
..|+. +-+++.+.+-|.+..|||+..+. .......+.+|...|..|+|...+. .+|+.|.||.||++|++..+.
T Consensus 156 FDWne~dp~~igtSSiDTTCTiWdie~~~----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 156 FDWNEVDPNLIGTSSIDTTCTIWDIETGV----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred cccccCCcceeEeecccCeEEEEEEeecc----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 33433 44678899999999999998752 1222235789999999999998554 789999999999999987664
Q ss_pred ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (531)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp 398 (531)
...+..... ....+.-+.+..........+ .-....+++.+.+. ...++..+.+|.+.|+.|+|.|
T Consensus 232 STIIYE~p~----------~~~pLlRLswnkqDpnymATf-~~dS~~V~iLDiR~---P~tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 232 STIIYEDPS----------PSTPLLRLSWNKQDPNYMATF-AMDSNKVVILDIRV---PCTPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred ceEEecCCC----------CCCcceeeccCcCCchHHhhh-hcCCceEEEEEecC---CCcceehhhcCcccccceEecC
Confidence 333322221 112222222222211111111 11223455555443 3567899999999999999999
Q ss_pred CC--eEEEEeCCCcEEEEECCCCe------EEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614 399 NG--FLLSSSADKTVRLWQVGIDR------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (531)
Q Consensus 399 ~~--~l~s~s~Dg~V~lwdl~~~~------~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I 455 (531)
.. .|++++.|..+.+||+...- ++..+...+.|+.|+|+|..+.+|+.+.. .++.|
T Consensus 298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred CCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 87 99999999999999997532 33344577889999999988889888764 44444
No 206
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.7e-11 Score=125.82 Aligned_cols=201 Identities=12% Similarity=0.101 Sum_probs=136.6
Q ss_pred ceeeeccccceeeeCCCCeEEeeec---CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCCC
Q 009614 231 MARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG 306 (531)
Q Consensus 231 ~~~~~~~~~s~~fspdg~~lasgs~---dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg 306 (531)
++.+...+.+.+|+|||+.|+..+. +..|.+|++..+.. +.+..+.+.+...+|+|||+.|+ +.+.++
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--------EEeecCCCcccCcEECCCCCEEEEEEecCC
Confidence 3444456667899999999887653 46899999875432 12445667788899999999775 555566
Q ss_pred c--EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614 307 T--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (531)
Q Consensus 307 ~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
. |.+||+.++.. ..+
T Consensus 269 ~~~Iy~~d~~~~~~---------------------------------------------------------------~~L 285 (435)
T PRK05137 269 NTDIYTMDLRSGTT---------------------------------------------------------------TRL 285 (435)
T ss_pred CceEEEEECCCCce---------------------------------------------------------------EEc
Confidence 5 55556654431 112
Q ss_pred ecCCCCeeEEEEcCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEEe
Q 009614 385 QGHSSEVLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWE 457 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~-~l~s~s~-Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd 457 (531)
..+.+......|+|+| .|+..+. ++ .|.+||+.++.......+...+....|+| ++++|+..+.+ ..|.+||
T Consensus 286 t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 286 TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEE
Confidence 2233445568999999 6666553 33 68888988776655544556677889999 89988876643 3688899
Q ss_pred CCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC------CcEEEEeCCCCeE
Q 009614 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT------GNCRFYDIKDNQL 504 (531)
Q Consensus 458 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d------g~I~iwd~~~~~l 504 (531)
+.++....+.. ...+..+.|+|||+.|+..+.+ ..++++|+.++..
T Consensus 365 ~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 365 PDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 87655443322 2346778999999998876553 2578888876554
No 207
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.4e-11 Score=108.81 Aligned_cols=197 Identities=14% Similarity=0.204 Sum_probs=144.2
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 315 (531)
-.++++.+.|..+-++.++.|+.++-||+.++. ...+++||++.|.++.--.....++||++||++||||.++
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT 187 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCE-------EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence 356778899888888877799999999998554 3457999999999999855555799999999999999999
Q ss_pred CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC-CCCeeEE
Q 009614 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDL 394 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l 394 (531)
++.+..+...... ..+..| ...|.++
T Consensus 188 ~k~v~~ie~yk~~-----------------------------------------------------~~lRp~~g~wigal 214 (325)
T KOG0649|consen 188 QKHVSMIEPYKNP-----------------------------------------------------NLLRPDWGKWIGAL 214 (325)
T ss_pred cceeEEeccccCh-----------------------------------------------------hhcCcccCceeEEE
Confidence 9876655332111 112223 3467788
Q ss_pred EEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceE
Q 009614 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (531)
Q Consensus 395 ~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~ 474 (531)
+.+.+ .|++|+ ...+.+|+++..++..+|..+.+|.-+.|. .+.+++++....|.-|.+..--...........+
T Consensus 215 a~~ed-WlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~---~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~ 289 (325)
T KOG0649|consen 215 AVNED-WLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFV---DDCVLIGGEGNHVQSYTLNGVLQANIPVESTACY 289 (325)
T ss_pred eccCc-eEEecC-CCceeEEeccCCCceEEEecccceeEeeee---cceEEEeccccceeeeeeccEEEEeccCCcccee
Confidence 76654 666655 467999999999999999999999999994 4678888888899999887533333444444556
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEE
Q 009614 475 AVCYCPDG-KGGIVGTMTGNCRFY 497 (531)
Q Consensus 475 ~v~~spdg-~~l~sgs~dg~I~iw 497 (531)
+..|+-.. +.|-.++...++.|+
T Consensus 290 s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 290 SASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eecccCCceEEEEecccceeeeee
Confidence 66665443 445556666667666
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.41 E-value=6.3e-13 Score=129.83 Aligned_cols=253 Identities=14% Similarity=0.158 Sum_probs=164.2
Q ss_pred ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc
Q 009614 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (531)
Q Consensus 240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 319 (531)
.+.++.+|.+++.|+..|.|..+|+.+..... ++. -...|.++.|-.+.+++|++ ....+.|||- .|..+
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-------Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtEl 203 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-------EIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTEL 203 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeee-------eee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEE
Confidence 36788899999999999999999988654321 121 13457777777777666665 3456777774 33333
Q ss_pred cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~ 399 (531)
..+..+. .+..+.|.+.+.- +++.+..+.+...|..+ ++.+..+....+.+..|+-+|-
T Consensus 204 HClk~~~-~v~rLeFLPyHfL----------------L~~~~~~G~L~Y~DVS~----GklVa~~~t~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 204 HCLKRHI-RVARLEFLPYHFL----------------LVAASEAGFLKYQDVST----GKLVASIRTGAGRTDVMKQNPY 262 (545)
T ss_pred eehhhcC-chhhhcccchhhe----------------eeecccCCceEEEeech----hhhhHHHHccCCccchhhcCCc
Confidence 3332211 1223333333321 12222223333333322 2335555666788888999997
Q ss_pred C-eEEEEeCCCcEEEEECCCCeEEEE-eecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEE
Q 009614 400 G-FLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVC 477 (531)
Q Consensus 400 ~-~l~s~s~Dg~V~lwdl~~~~~l~~-~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~ 477 (531)
+ .+-+|...|+|.+|......++.. +.|.++|.+|+++| +|+|+++.+.|..|+|||+++...+.......+...++
T Consensus 263 NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls 341 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLS 341 (545)
T ss_pred cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCCccccc
Confidence 7 899999999999999988877654 46999999999999 99999999999999999999877554333356677888
Q ss_pred EccCCCEEEEEeCCCcEEEEe-CCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 478 YCPDGKGGIVGTMTGNCRFYD-IKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 478 ~spdg~~l~sgs~dg~I~iwd-~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
+|..| +++.+....|.||. .-.+..-. . .+.-..+. +..|.++.|+|
T Consensus 342 ~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~--~-~pYm~H~~-~~~V~~l~FcP 389 (545)
T KOG1272|consen 342 LSQKG--LLALSYGDHVQIWKDALKGSGHG--E-TPYMNHRC-GGPVEDLRFCP 389 (545)
T ss_pred ccccc--ceeeecCCeeeeehhhhcCCCCC--C-cchhhhcc-Ccccccceecc
Confidence 88766 44555566799994 33322100 0 01111122 34899999998
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=1.6e-10 Score=108.52 Aligned_cols=178 Identities=13% Similarity=0.204 Sum_probs=121.1
Q ss_pred CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc-cCccccceecCCCCCeeEEE
Q 009614 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQDTDPSCLYF 334 (531)
Q Consensus 256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~ 334 (531)
...|.|||-.+.. ... ++ ....+|.+|.+.++ .|++. ..+.|.||... +.+.+..+.....+.....+
T Consensus 74 pNkviIWDD~k~~-~i~------el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 74 PNKVIIWDDLKER-CII------EL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred CceEEEEecccCc-EEE------EE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEee
Confidence 3679999933222 111 12 24678999999866 45555 35689999987 44555555544433333333
Q ss_pred eecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCc-EE
Q 009614 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VR 412 (531)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~-V~ 412 (531)
.+.....+++. .+-.-+.+.+.+...... .+...+..|...|.|++.+.+| ++||+|..|+ ||
T Consensus 143 ~~~~~k~~Laf-------------Pg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 143 CPTSNKSLLAF-------------PGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred cCCCCceEEEc-------------CCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 33322222221 111223333333222111 1346678999999999999999 9999999998 89
Q ss_pred EEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 413 LWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 413 lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
|||..+|..+..++ ....|.||+|+| +..+|+++|..|+|+||.++.
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 99999999999996 567899999999 999999999999999999875
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.41 E-value=2.7e-12 Score=127.31 Aligned_cols=223 Identities=12% Similarity=0.197 Sum_probs=144.8
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccC
Q 009614 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (531)
Q Consensus 282 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (531)
.|..-|.|+.|+.+...+.+++ |..+.+|.-.+......+..+...+....+. ......++. ..-..+..+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~-------~~rs~~~g~-~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHL-------GGRSSGGGK-GSDTLLICS 82 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccc-------cccccCCCC-CcceEEEEc
Confidence 3666778999998776665554 5555555443433333333333222111110 000011111 111123334
Q ss_pred CCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeC
Q 009614 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV 439 (531)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~ 439 (531)
.|+.+.+.... .+.-.....|.+.|.+-.|+|+| -|++++.||.|++|.- +|-.-.++ ....+|.|++|.|.
T Consensus 83 ~DGkf~il~k~-----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 83 NDGRFVILNKS-----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred CCceEEEeccc-----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCC
Confidence 45555444322 22344567899999999999999 9999999999999985 44333333 36678999999994
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-CeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614 440 DDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (531)
Q Consensus 440 d~~~l~sgs~Dg~I~Iwd~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~ 518 (531)
..+.+++.+ +.+.|=.+.. .+++.|..|.+.|.++.|+|...++++|+.|-..+|||.....+.. ...
T Consensus 157 S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~---------S~~ 225 (737)
T KOG1524|consen 157 SNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT---------SAA 225 (737)
T ss_pred CCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc---------CCh
Confidence 445555443 4666666654 4677999999999999999999999999999999999988655432 334
Q ss_pred CCceeeeEEEee
Q 009614 519 PGKRITGFQVVK 530 (531)
Q Consensus 519 ~~~~It~l~f~p 530 (531)
+.-+||+++|+|
T Consensus 226 ~ey~ITSva~np 237 (737)
T KOG1524|consen 226 EEYAITSVAFNP 237 (737)
T ss_pred hccceeeeeecc
Confidence 557899999987
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.5e-11 Score=116.94 Aligned_cols=199 Identities=14% Similarity=0.299 Sum_probs=140.8
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-ccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCcc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHER 318 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~ 318 (531)
++|++.=..+|++..|-.|++|+-.... .. .++ .-+..|+||+|-|. +..|+.|+..| |.||.......
T Consensus 104 ~aWhqH~~~fava~nddvVriy~ksst~--pt------~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSSTC--PT------KLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCCCC--Cc------eecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 6788866677889999999999876411 11 121 23467999999994 45677777655 89998643211
Q ss_pred ccc-eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc
Q 009614 319 LDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (531)
Q Consensus 319 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 397 (531)
... +.. .. +. ...+....+| ..|++|.|.
T Consensus 175 ~~r~~~~----------~s------------------------~~---------------~~qvl~~pgh-~pVtsmqwn 204 (445)
T KOG2139|consen 175 ANRNIRM----------MS------------------------TH---------------HLQVLQDPGH-NPVTSMQWN 204 (445)
T ss_pred ccccccc----------cc------------------------cc---------------chhheeCCCC-ceeeEEEEc
Confidence 100 000 00 00 0012333455 689999999
Q ss_pred CCC-eEEEEe-CCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC-CCCeEEEecCCCCce
Q 009614 398 KNG-FLLSSS-ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQVVDYTDIREIV 473 (531)
Q Consensus 398 p~~-~l~s~s-~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~-~~~~~~~~~~~~~~v 473 (531)
++| .|++++ .|..|+|||..++.++... ...+.++-+.|+| |+.+|.++.-|+..++|+. ++.....+.-..+.|
T Consensus 205 ~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrv 283 (445)
T KOG2139|consen 205 EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRV 283 (445)
T ss_pred CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCce
Confidence 999 777776 5678999999999887776 3667788999999 9999999999999999954 445555666667799
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 474 SAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 474 ~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
...+|+|+|+.|+.++. |.-++|.+.
T Consensus 284 qtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 284 QTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred eeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 99999999998876663 445566553
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.40 E-value=4.3e-11 Score=121.56 Aligned_cols=209 Identities=17% Similarity=0.227 Sum_probs=138.1
Q ss_pred ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcc-cccccccce---------------------------EE
Q 009614 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-ELSSLYTGQ---------------------------EF 280 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~-~~~~~~~~~---------------------------~l 280 (531)
.++.+|++.|.+++++.||+.+|+|+.|..|.||.-+-... ..+.....| ..
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V 126 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV 126 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH
Confidence 45778999999999999999999999999999997653211 011000000 11
Q ss_pred cccC--CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceec---CCCCCeeEEEeecCCcceeeeeccccccccc
Q 009614 281 LAHE--GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (531)
Q Consensus 281 ~~H~--~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (531)
..|. ..|.+.+|..||++|+.|-.||+|.|-+- +++....+.. ...++..+.+.++......
T Consensus 127 ~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~------------ 193 (1081)
T KOG1538|consen 127 SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRN------------ 193 (1081)
T ss_pred HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCcc------------
Confidence 2232 35677889999999999999999998864 4444334433 3344555666555431100
Q ss_pred cccccCCCceEEEeCCc--cccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCce
Q 009614 356 KSLRKSSDLTCVVLPPK--VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV 431 (531)
Q Consensus 356 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V 431 (531)
.-..++-|... .+.+.++.+..-..-.-...|+.+.++| +++.|+.|+.+++|. +.|-.+.+.. ....|
T Consensus 194 ------di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WI 266 (1081)
T KOG1538|consen 194 ------DILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWI 266 (1081)
T ss_pred ------ceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeE
Confidence 00011112211 1112222222222233456799999999 999999999999996 5666666665 67899
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614 432 TSVAFNPVDDNYFISGSIDGKVRIWEV 458 (531)
Q Consensus 432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~ 458 (531)
++++..| ++++++.|+.||+|.-|++
T Consensus 267 WtV~~~P-NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 267 WTVQAKP-NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEEEcc-CCceEEEEEccCeeehhhh
Confidence 9999999 9999999999999998876
No 213
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.40 E-value=1.8e-10 Score=116.21 Aligned_cols=228 Identities=13% Similarity=0.160 Sum_probs=135.8
Q ss_pred EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccc-Ccc--ccceecCC
Q 009614 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIE-HER--LDGFDVQD 326 (531)
Q Consensus 251 asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~-~~~--~~~~~~~~ 326 (531)
++...++.|.+|++.... .+...+.+. +.+....+.++|++++|++++ .++.|.+|++.. +.. ...... .
T Consensus 6 ~~~~~~~~I~~~~~~~~g----~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~ 79 (330)
T PRK11028 6 IASPESQQIHVWNLNHEG----ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-P 79 (330)
T ss_pred EEcCCCCCEEEEEECCCC----ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-C
Confidence 445678999999996321 112223333 345677899999999987764 588999999963 321 111111 1
Q ss_pred CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eE-EE
Q 009614 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LS 404 (531)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l-~s 404 (531)
..+..+.+.++... ++.. ...++.+.+|+........+.+..+. +......++++|++ ++ ++
T Consensus 80 ~~p~~i~~~~~g~~-l~v~--------------~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 80 GSPTHISTDHQGRF-LFSA--------------SYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred CCceEEEECCCCCE-EEEE--------------EcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEe
Confidence 12333333333221 1111 11234555554432111111222222 22346778899998 55 55
Q ss_pred EeCCCcEEEEECCCCeEEE-------EeecCCceEEEEEeeCCCCEEEEEeC-CCeEEEEeCCC--CeE--EE-ecC---
Q 009614 405 SSADKTVRLWQVGIDRCLR-------VFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR--CQV--VD-YTD--- 468 (531)
Q Consensus 405 ~s~Dg~V~lwdl~~~~~l~-------~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd~~~--~~~--~~-~~~--- 468 (531)
...++.|.+||+.+...+. ..........+.|+| ++++++++.. ++.|.+|++.. ++. +. ...
T Consensus 144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~ 222 (330)
T PRK11028 144 CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA 222 (330)
T ss_pred eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence 5677999999998643221 112234467899999 8998887765 89999999973 332 21 111
Q ss_pred ---CCCceEEEEEccCCCEEEEEeC-CCcEEEEeCCC
Q 009614 469 ---IREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKD 501 (531)
Q Consensus 469 ---~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~ 501 (531)
.......+.++|+|++|+++.. ++.|.+|++..
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 1122346889999999998864 78899999854
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.39 E-value=7e-13 Score=137.50 Aligned_cols=214 Identities=19% Similarity=0.316 Sum_probs=157.4
Q ss_pred ccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccc
Q 009614 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI 352 (531)
Q Consensus 273 ~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (531)
.+.....+.+|..+|+|+.|...|.++++|++|..|+||...++.++.....+...+..++...+.
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-------------- 244 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-------------- 244 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh--------------
Confidence 344445688999999999999999999999999999999999999999998888877665543322
Q ss_pred ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEE-----eec
Q 009614 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV-----FSH 427 (531)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~-----~~h 427 (531)
.....++.|..+.+|-... +.|+..+.+|++.|++|+|+|- .+.+.||++++||.+-...+.. +..
T Consensus 245 --~~iaaaS~D~vIrvWrl~~----~~pvsvLrghtgavtaiafsP~---~sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 --TMIAAASNDKVIRVWRLPD----GAPVSVLRGHTGAVTAIAFSPR---ASSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred --hhhhhcccCceEEEEecCC----CchHHHHhccccceeeeccCcc---ccCCCCCceEeccccccccccCCCCCCccc
Confidence 2334567777788887665 5678889999999999999996 4889999999999871111100 000
Q ss_pred CCc--------------------------eEEEEEee----------CCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCC
Q 009614 428 NNY--------------------------VTSVAFNP----------VDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR 470 (531)
Q Consensus 428 ~~~--------------------------V~sv~fsp----------~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~ 470 (531)
... ..+++|.. +...+.+++-.+-.+.+|++.+++.++ ..+|.
T Consensus 316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred ccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence 111 11122221 111234444455667888888887774 78899
Q ss_pred CceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 471 EIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 471 ~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
..++.+.++|-+ ....+++.||..-|||+-.|-.++.+.
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 999999999955 555789999999999999888877665
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=8.5e-11 Score=122.59 Aligned_cols=200 Identities=20% Similarity=0.205 Sum_probs=130.0
Q ss_pred eeccccceeeeCCCCeEEeeecC---CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCCCcEE
Q 009614 234 IIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVR 309 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~d---g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~ 309 (531)
+...+.+.+|+|||+.|+..+.. ..|.+||+..+... .+....+.+....|+|||+.|+ +.+.+|...
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--------VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 34456678999999999876542 46999998755422 1223345567899999999886 567788877
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
||.+..... ....+..+.+
T Consensus 266 Iy~~d~~~~-------------------------------------------------------------~~~~lt~~~~ 284 (427)
T PRK02889 266 IYTVNADGS-------------------------------------------------------------GLRRLTQSSG 284 (427)
T ss_pred EEEEECCCC-------------------------------------------------------------CcEECCCCCC
Confidence 776532100 0111222334
Q ss_pred CeeEEEEcCCC-eEEEEe-CCCcEEEEEC--CCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC---eEEEEeCCCCe
Q 009614 390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQ 462 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s-~Dg~V~lwdl--~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg---~I~Iwd~~~~~ 462 (531)
......|+|+| .|+..+ .++...||.+ .++...............+|+| ++++|+..+.++ .|.+||+.+++
T Consensus 285 ~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 285 IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCC
Confidence 45567899999 666554 3456666654 4554433333334455689999 999998777654 69999999887
Q ss_pred EEEecCCCCceEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeEE
Q 009614 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQLY 505 (531)
Q Consensus 463 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~~~~l~ 505 (531)
...+... .......|+|||+.|+.++.++ .+.+.++. ++..
T Consensus 364 ~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~ 407 (427)
T PRK02889 364 VTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIK 407 (427)
T ss_pred eEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCce
Confidence 6654433 3446789999999998877654 35556663 4433
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=1.7e-11 Score=121.96 Aligned_cols=134 Identities=19% Similarity=0.359 Sum_probs=107.0
Q ss_pred CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC--------------CeEEE--------------Eee-cCCceEEEEE
Q 009614 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--------------DRCLR--------------VFS-HNNYVTSVAF 436 (531)
Q Consensus 388 ~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~--------------~~~l~--------------~~~-h~~~V~sv~f 436 (531)
...|+++.|-|.+ .++.+-.+|.+.+||..- +.... .+. ..+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4789999999976 888889999999997631 11111 111 2457888999
Q ss_pred eeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc
Q 009614 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (531)
Q Consensus 437 sp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~ 515 (531)
+| |+++||+.+.||.+||||..+.+++. ....-+...++||+|||+||++|+.|..|.||.+..++++..-+ |
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq----G- 372 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ----G- 372 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc----c-
Confidence 99 99999999999999999999988774 45556789999999999999999999999999999999987543 2
Q ss_pred ccCCCceeeeEEEee
Q 009614 516 KKLPGKRITGFQVVK 530 (531)
Q Consensus 516 kk~~~~~It~l~f~p 530 (531)
|..=|..++|-|
T Consensus 373 ---HkSWVs~VaFDp 384 (636)
T KOG2394|consen 373 ---HKSWVSVVAFDP 384 (636)
T ss_pred ---cccceeeEeecc
Confidence 224567777754
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=8.5e-11 Score=110.29 Aligned_cols=231 Identities=15% Similarity=0.237 Sum_probs=141.5
Q ss_pred ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCC--CEEEEEEccCCCEEEE-EeCC------CcEEE
Q 009614 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG--SILTMKFSLDGQYLAS-GGED------GTVRV 310 (531)
Q Consensus 240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~--~I~~l~fspdg~~Las-gs~D------g~I~i 310 (531)
+++|+.|...+++|...| .+||+.+.-+.... .+-+.+ .+.-|-|- .++||- ||.+ ..|.|
T Consensus 10 svs~NQD~ScFava~~~G-friyn~~P~ke~~~-------r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS-------RQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred EEEEccCCceEEEEecCc-eEEEecCchhhhhh-------hccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEE
Confidence 379999999999998777 89999985332211 111222 23333332 344443 3333 46999
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec--CC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG--HS 388 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~ 388 (531)
||=....++.++.... ++..+.+..+. .++ --...+++|.-.. ..+.++.+.. ..
T Consensus 80 WDD~k~~~i~el~f~~-~I~~V~l~r~r--iVv-----------------vl~~~I~VytF~~---n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 80 WDDLKERCIIELSFNS-EIKAVKLRRDR--IVV-----------------VLENKIYVYTFPD---NPKLLHVIETRSNP 136 (346)
T ss_pred EecccCcEEEEEEecc-ceeeEEEcCCe--EEE-----------------EecCeEEEEEcCC---ChhheeeeecccCC
Confidence 9955555444443221 22222222111 000 0111222222110 0112232222 12
Q ss_pred CCeeEEEEcCCC-eEEE-EeCCCcEEEEECCCCeE---EEEeecCCceEEEEEeeCCCCEEEEEeCCCe-EEEEeCCCCe
Q 009614 389 SEVLDLSWSKNG-FLLS-SSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQ 462 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s-~s~Dg~V~lwdl~~~~~---l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~-I~Iwd~~~~~ 462 (531)
..+.+++-..+. +|+. |-.-|.|.|-|+...+. ...-.|...|.||+.+- +|..+|++|..|+ |||||..+++
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCc
Confidence 333344333233 4444 44568999999986655 44556999999999998 9999999999997 8999999998
Q ss_pred EEE-e--cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614 463 VVD-Y--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (531)
Q Consensus 463 ~~~-~--~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l 504 (531)
.+. + -.....|++++|+|+..+|++++..|+++||.++....
T Consensus 216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 874 2 23456799999999999999999999999999987543
No 218
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=2.2e-11 Score=115.09 Aligned_cols=246 Identities=18% Similarity=0.342 Sum_probs=158.4
Q ss_pred eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC------------CCEEEEEEccCCC--EEE
Q 009614 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA 300 (531)
Q Consensus 235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~La 300 (531)
.+-+.++.|...|.+||+|.++|+|.++.-...... ......+++.|. ..|..+.|.++++ .++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 355667999999999999999999999977654431 111112344444 4688999998655 677
Q ss_pred EEeCCCcEEEEEcccCccccc-eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614 301 SGGEDGTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (531)
Q Consensus 301 sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (531)
..+.|.+|++|.+........ ....... ....+..+ ...+.+..+..+. ..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~---------~~~~~~~l---------r~p~~~~~~~~ve----------a~ 154 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEG---------PPGTITSL---------RLPVEGRHDLEVE----------AS 154 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccC---------CCCcccee---------eceeeccccceee----------ee
Confidence 778999999999876543221 1100000 00000000 0000011111111 12
Q ss_pred ceeEe-ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCC-CeEEEEee--------cCCceEEEEEeeCCCCEEEEEeC
Q 009614 380 PLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI 449 (531)
Q Consensus 380 ~~~~~-~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~-~~~l~~~~--------h~~~V~sv~fsp~d~~~l~sgs~ 449 (531)
|.+.+ .+|+..|++|.++.++..+.+..|=.|.+|++.- .++..... -..-|++..|+|...+.|+-.+.
T Consensus 155 prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 155 PRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 22222 4588999999999999444456688899999873 33332222 23468999999988999999999
Q ss_pred CCeEEEEeCCCCeEE-------E----------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeEEEEeeee
Q 009614 450 DGKVRIWEVRRCQVV-------D----------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI-KDNQLYQQNQIC 511 (531)
Q Consensus 450 Dg~I~Iwd~~~~~~~-------~----------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~-~~~~l~~~~~~~ 511 (531)
.|+|++-|++...+- . +...-..|..+.|+++|+|+++-.. -+|++||+ -..+.+..++++
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 999999999953211 0 1122346889999999999998765 57999999 456677777654
No 219
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.36 E-value=4e-12 Score=116.11 Aligned_cols=151 Identities=19% Similarity=0.288 Sum_probs=116.9
Q ss_pred eEEeeecCCeEEEEeCCCCccccc---ccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614 249 ELTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (531)
Q Consensus 249 ~lasgs~dg~I~vwd~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (531)
++++|..+|.|.+||+..+.+.+. ..........|..+|.++.|.+.-..=++|+.+..+..|++........+
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~--- 243 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI--- 243 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc---
Confidence 567899999999999997633221 11122235679999999999886555678888888999987533110000
Q ss_pred CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEE
Q 009614 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s 404 (531)
-....-..-.|..+.+.|++ .+++
T Consensus 244 -------------------------------------------------------~~e~~lknpGv~gvrIRpD~KIlAT 268 (323)
T KOG0322|consen 244 -------------------------------------------------------RKEITLKNPGVSGVRIRPDGKILAT 268 (323)
T ss_pred -------------------------------------------------------cceEEecCCCccceEEccCCcEEee
Confidence 01111123467888899999 9999
Q ss_pred EeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614 405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (531)
Q Consensus 405 ~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~ 458 (531)
++.|+.||+|..++.+++..+. |...|++++|+| +.+++|+++.|+.|.+|++
T Consensus 269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999999997 999999999999 8999999999999999986
No 220
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.3e-10 Score=122.14 Aligned_cols=215 Identities=19% Similarity=0.317 Sum_probs=163.9
Q ss_pred ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (531)
Q Consensus 238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 317 (531)
..++.+.+.|.+.+... +-.+.+|...+..+... ....-..|.-.+++.+++|+++++|+|..||.|.+|.=-...
T Consensus 163 ~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~---~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~ 238 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTS---SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS 238 (792)
T ss_pred CccEEEcCCceEEEEEE-eeeEEEEEecccceeec---cchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc
Confidence 45678888888776664 45688888876542211 111234577789999999999999999999999999732110
Q ss_pred cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc
Q 009614 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (531)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 397 (531)
.. ......+.=|...|++++|+
T Consensus 239 --------~~--------------------------------------------------~~t~t~lHWH~~~V~~L~fS 260 (792)
T KOG1963|consen 239 --------DD--------------------------------------------------SETCTLLHWHHDEVNSLSFS 260 (792)
T ss_pred --------cc--------------------------------------------------cccceEEEecccccceeEEe
Confidence 00 00123345588899999999
Q ss_pred CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE----ec-----
Q 009614 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD----YT----- 467 (531)
Q Consensus 398 p~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~----~~----- 467 (531)
++| +|++|+..+.+.+|.+.+++....-+-.++|..+.++| |+.+.+....|..|.+....+..... +.
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred cCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 999 99999999999999999998444445889999999999 99999999999999999886643321 11
Q ss_pred ---CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc
Q 009614 468 ---DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (531)
Q Consensus 468 ---~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~ 515 (531)
....-.+.+++.|--+.++-.+..|.|.+||+.+.+.+.+++++....
T Consensus 340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~ 390 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY 390 (792)
T ss_pred ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence 123456889999977788999999999999999999998888776543
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5.8e-11 Score=123.95 Aligned_cols=174 Identities=17% Similarity=0.129 Sum_probs=121.2
Q ss_pred CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcccCccccceecCCCCCeeE
Q 009614 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL 332 (531)
Q Consensus 256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~ 332 (531)
+..|.+||...... +.+..|...+...+|+|||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------------ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------------ 242 (429)
T ss_pred eEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------------
Confidence 57899999874331 3466788899999999999999987654 369999987654210
Q ss_pred EEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEE-eCCCc
Q 009614 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADKT 410 (531)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~-s~Dg~ 410 (531)
+..+.+| ...++|+|+| .|+.+ +.++.
T Consensus 243 ------------------------------------------------l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 243 ------------------------------------------------VASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ------------------------------------------------EecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 1112223 2357999999 66665 46777
Q ss_pred EEEE--ECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCC--CeEEEecCCCCceEEEEEccCCCEE
Q 009614 411 VRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGG 485 (531)
Q Consensus 411 V~lw--dl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~--~~~~~~~~~~~~v~~v~~spdg~~l 485 (531)
+.|| |+.++.......+...+...+|+| |++.|+..+ .+|..+||++.. +..... .+.. ....|+|||++|
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTL 347 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEE
Confidence 5555 676776655555777788999999 888776555 578888887643 333222 3333 457899999999
Q ss_pred EEEeCCCcEEEEeCCCCeEE
Q 009614 486 IVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 486 ~sgs~dg~I~iwd~~~~~l~ 505 (531)
+.++.++ +.+||+.+++..
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~ 366 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTE 366 (429)
T ss_pred EEEcCCC-EEEEECCCCCeE
Confidence 8888765 566999888654
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3.2e-10 Score=118.78 Aligned_cols=176 Identities=12% Similarity=0.064 Sum_probs=126.6
Q ss_pred CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcccCccccceecCCCCCeeE
Q 009614 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCL 332 (531)
Q Consensus 256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 332 (531)
...|.++|..... .+.+..|...+...+|+|||+.|+..+. +..|.+||+.+++..
T Consensus 181 ~~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~------------- 239 (435)
T PRK05137 181 IKRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE------------- 239 (435)
T ss_pred ceEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-------------
Confidence 3478888875322 1245678889999999999999888764 467999998765421
Q ss_pred EEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eE-EEEeCCCc
Q 009614 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKT 410 (531)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l-~s~s~Dg~ 410 (531)
.+..+.+.+...+|+|+| .| ++.+.++.
T Consensus 240 --------------------------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 240 --------------------------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred --------------------------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 112234456678999999 54 45566655
Q ss_pred --EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-C--CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEE
Q 009614 411 --VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-D--GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485 (531)
Q Consensus 411 --V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-D--g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l 485 (531)
|.+||+.++.......+.......+|+| |++.|+..+. + ..|++||+.+++...+......+....|+|||++|
T Consensus 270 ~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 270 TDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred ceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence 7777998887766555666678899999 8988887664 3 36888898887766655555566778999999999
Q ss_pred EEEeCC---CcEEEEeCCCCe
Q 009614 486 IVGTMT---GNCRFYDIKDNQ 503 (531)
Q Consensus 486 ~sgs~d---g~I~iwd~~~~~ 503 (531)
+....+ ..|.+||+.++.
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc
Confidence 887654 358888886554
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.32 E-value=3.7e-12 Score=124.54 Aligned_cols=199 Identities=15% Similarity=0.207 Sum_probs=156.4
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCce
Q 009614 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (531)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (531)
.-+.+.++.+|++|+.|+.-|.|-.+|+.+++...++..... +..+.|..+. ..+.......
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et-v~Dv~~LHne-----------------q~~AVAQK~y 192 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET-VRDVTFLHNE-----------------QFFAVAQKKY 192 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhh-hhhhhhhcch-----------------HHHHhhhhce
Confidence 456789999999999999999999999999988777654332 1111121111 1122333444
Q ss_pred EEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCE
Q 009614 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY 443 (531)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~ 443 (531)
+++|+... ..++-++.| ..|..|.|.|.. +|++++..|.++.-|+.+|+.+..+. ..+.+..++-+| -...
T Consensus 193 ~yvYD~~G-----tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaV 265 (545)
T KOG1272|consen 193 VYVYDNNG-----TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAV 265 (545)
T ss_pred EEEecCCC-----cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccce
Confidence 55665543 234444444 468899999998 88999999999999999999998886 667888999999 7789
Q ss_pred EEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 444 l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
+-+|...|+|.+|.....+++ ++.-|.++|.+|++.++|+|+||.+.|..|+|||++.-..+..+.
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 999999999999999988776 688899999999999999999999999999999999877555544
No 224
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=8.2e-12 Score=122.88 Aligned_cols=267 Identities=18% Similarity=0.267 Sum_probs=172.3
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCc
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGT 307 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~ 307 (531)
.+..|.+.++.+.|...|..+++|+.|.+|.+||+......+. -..||...|...+|-| +.+-|++++.||.
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc------cccccccchhhhhccCCCCCcCceeccccCc
Confidence 4566778888999999999999999999999999987665443 2457988998889988 4567999999999
Q ss_pred EEEEEcccCccc---cceecCCCCCeeEEEeecCCcceeeeecccccc--------ccccccccCCCce--EEEeC----
Q 009614 308 VRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI--------DKTKSLRKSSDLT--CVVLP---- 370 (531)
Q Consensus 308 I~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~---- 370 (531)
|++=.+...... ..+..+...+..++..+.....+....-+.... ......+...+.. +.++.
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 999877543322 233444555555555554443333222111110 0000001111111 11111
Q ss_pred C-cc--cccc---------Ccc-ee--Eeec--C-----------CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC--C
Q 009614 371 P-KV--FRLL---------EKP-LH--EFQG--H-----------SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--D 419 (531)
Q Consensus 371 ~-~~--~~~~---------~~~-~~--~~~~--h-----------~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~--~ 419 (531)
+ .. +... .++ +. ...+ + .-.|++++++.++ -|+++..|-.|+++.-.- +
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 1 11 0000 000 00 0111 0 1258899999998 777888888888885332 2
Q ss_pred ----------eEEEE-ee-cC--CceEEEEE-eeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCC
Q 009614 420 ----------RCLRV-FS-HN--NYVTSVAF-NPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK 483 (531)
Q Consensus 420 ----------~~l~~-~~-h~--~~V~sv~f-sp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~ 483 (531)
..++. ++ |. ..|..+-| -| ...|+++|+.-|.|.||+-.+++++. +.+....|+|+.=+|--.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P 449 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP 449 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc
Confidence 12222 32 33 34667765 46 78999999999999999999999885 445555899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCe
Q 009614 484 GGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 484 ~l~sgs~dg~I~iwd~~~~~ 503 (531)
.||+.+.|..|+||...+.+
T Consensus 450 vLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 450 VLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hhhccCCccceeeecCCccc
Confidence 99999999999999875444
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.5e-10 Score=116.16 Aligned_cols=234 Identities=16% Similarity=0.144 Sum_probs=153.2
Q ss_pred cccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccC--CCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 237 RHGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE--GSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 237 ~~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~--~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
..+.+..+|||+++ |+|...-.|++||+...... +.-|. ..|.-.-++.|-..++.--.|.+|-+..-
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceee---------eeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 33458899999986 66888999999999854322 33343 23444444555555555566777766542
Q ss_pred ccCccccceecCC-----CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 314 IEHERLDGFDVQD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 314 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
.....-..++... ..+.|-.+ .++....++.++... +..+..+....
T Consensus 124 ~G~hy~~RIP~~GRDm~y~~~scDly------------------------~~gsg~evYRlNLEq----GrfL~P~~~~~ 175 (703)
T KOG2321|consen 124 YGRHYRTRIPKFGRDMKYHKPSCDLY------------------------LVGSGSEVYRLNLEQ----GRFLNPFETDS 175 (703)
T ss_pred cCeeeeeecCcCCccccccCCCccEE------------------------EeecCcceEEEEccc----ccccccccccc
Confidence 1111100111000 01111111 112222233332222 23355566667
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-------cCC-----ceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------HNN-----YVTSVAFNPVDDNYFISGSIDGKVRI 455 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-------h~~-----~V~sv~fsp~d~~~l~sgs~Dg~I~I 455 (531)
+.++++..++-. +|++|+.+|.|-.||.++...+.++. |.+ .|+++.|+. ++-.+++|..+|.|.|
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~i 254 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLI 254 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEE
Confidence 899999999966 99999999999999999888777664 333 399999997 7999999999999999
Q ss_pred EeCCCCeEEEecCCC--CceEEEEEccCC--CEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 456 WEVRRCQVVDYTDIR--EIVSAVCYCPDG--KGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 456 wd~~~~~~~~~~~~~--~~v~~v~~spdg--~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
||+++.+++-...|. -+|..+.|.+.+ +.|++. ....++|||-.+|+....+.
T Consensus 255 yDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 255 YDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE 311 (703)
T ss_pred EEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc
Confidence 999999988666554 578889998753 334333 35679999999999876554
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2.3e-10 Score=119.71 Aligned_cols=177 Identities=19% Similarity=0.164 Sum_probs=123.4
Q ss_pred CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcccCccccceecCCCCCeeEE
Q 009614 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (531)
Q Consensus 257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~ 333 (531)
.+|.+||...... +.+..|...+...+|+|||+.|+.++.+ ..|.+|++.+++...
T Consensus 184 ~~l~i~D~~g~~~--------~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~------------- 242 (433)
T PRK04922 184 YALQVADSDGYNP--------QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL------------- 242 (433)
T ss_pred EEEEEECCCCCCc--------eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------
Confidence 4688898753321 2355677789999999999999987743 468889886654210
Q ss_pred EeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eE-EEEeCCC--
Q 009614 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADK-- 409 (531)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l-~s~s~Dg-- 409 (531)
+..+.+....+.|+|+| .| ++.+.++
T Consensus 243 --------------------------------------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 243 --------------------------------------------------VASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred --------------------------------------------------eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 11122233467899999 44 4555555
Q ss_pred cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CCe--EEEEeCCCCeEEEecCCCCceEEEEEccCCCEEE
Q 009614 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGK--VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (531)
Q Consensus 410 ~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg~--I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 486 (531)
.|.+||+.+++......+.......+|+| ++++|+..+. +|. |+++|+.+++...+.........++|+|||++|+
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred eEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 59999999888665555655667899999 8988887664 444 7777887776654443334455789999999998
Q ss_pred EEeCCC---cEEEEeCCCCeEE
Q 009614 487 VGTMTG---NCRFYDIKDNQLY 505 (531)
Q Consensus 487 sgs~dg---~I~iwd~~~~~l~ 505 (531)
..+.++ .|.+||+.+++..
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE
Confidence 876543 5999999887754
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=6.9e-10 Score=115.75 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=122.9
Q ss_pred CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcccCccccceecCCCCCeeE
Q 009614 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCL 332 (531)
Q Consensus 256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 332 (531)
...|.++|...... +.+..+...+...+|+|||+.|+..+. +..|.+|++.+++...
T Consensus 178 ~~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~------------ 237 (429)
T PRK03629 178 PYELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ------------ 237 (429)
T ss_pred ceeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE------------
Confidence 34788888764332 224456778999999999999887542 3568888876654210
Q ss_pred EEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEE-eCCC-
Q 009614 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADK- 409 (531)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~-s~Dg- 409 (531)
+..+.+ .+..+.|+|+| .|+.. +.++
T Consensus 238 ------------------------------------------------l~~~~~---~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 238 ------------------------------------------------VASFPR---HNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred ------------------------------------------------ccCCCC---CcCCeEECCCCCEEEEEEcCCCC
Confidence 111122 23457899999 55543 4454
Q ss_pred -cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC-C--eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEE
Q 009614 410 -TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485 (531)
Q Consensus 410 -~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D-g--~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l 485 (531)
.|.+||+.+++..+...+...+....|+| +++.|+..+.+ + .|.++|+.+++...+..........+|+|||++|
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 58899999888766666666788999999 89988777654 3 4555577777665554444556678999999999
Q ss_pred EEEeCC---CcEEEEeCCCCeEE
Q 009614 486 IVGTMT---GNCRFYDIKDNQLY 505 (531)
Q Consensus 486 ~sgs~d---g~I~iwd~~~~~l~ 505 (531)
+..+.+ ..|.+||+.+++..
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeE
Confidence 886654 35888999888643
No 228
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=8.4e-11 Score=125.54 Aligned_cols=199 Identities=17% Similarity=0.249 Sum_probs=153.0
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCc
Q 009614 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (531)
Q Consensus 285 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (531)
..|....+..+...++.+..+..+.+||...+.....+......... ....-.......+...++.-+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~------------~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLY------------SSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEE------------eEEEEeccCcEEEEEeccccc
Confidence 34555566667788999999999999999887766555433221111 111111122334456677778
Q ss_pred eEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--EeecCCceEEEEEeeCCC
Q 009614 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDD 441 (531)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~--~~~h~~~V~sv~fsp~d~ 441 (531)
.+++|.+. ...++. .+.+|.+.|..+.|+.+| ++++.|+|.++|+|++.+.+.+. .|.|+..|+.++|+| .
T Consensus 156 ~iivW~~~---~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n- 229 (967)
T KOG0974|consen 156 EIIVWKPH---EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N- 229 (967)
T ss_pred cEEEEecc---ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c-
Confidence 88999887 223333 689999999999999999 99999999999999999988765 567999999999998 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEEEecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 442 ~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
++++++.|.+.++|+....+...+..|. ..+..++..++...+++++.||.+++|++...
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999999999977766555566654 57899999999999999999999999998753
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.28 E-value=9.6e-10 Score=111.65 Aligned_cols=245 Identities=14% Similarity=0.136 Sum_probs=136.7
Q ss_pred ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcccC
Q 009614 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEH 316 (531)
Q Consensus 238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~~ 316 (531)
+..+.|+|||+++.+.+.||.|.++|+.+.+. ..+++... ...++++++||++++++. ..+.+.++|..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-------v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-------VATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-------EEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccE-------EEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence 34478999999999999999999999986552 23344333 467899999999998775 5899999999999
Q ss_pred ccccceecCCCCC-------eeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 317 ERLDGFDVQDTDP-------SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 317 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
+.++.+....... ..+..++.....++.+ ...+.+.+.+.... ............
T Consensus 111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l---------------kd~~~I~vVdy~d~---~~~~~~~i~~g~ 172 (369)
T PF02239_consen 111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL---------------KDTGEIWVVDYSDP---KNLKVTTIKVGR 172 (369)
T ss_dssp -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE---------------TTTTEEEEEETTTS---SCEEEEEEE--T
T ss_pred cceeecccccccccccCCCceeEEecCCCCEEEEEE---------------ccCCeEEEEEeccc---cccceeeecccc
Confidence 8888775432211 1122222211111111 11112222221111 001111112233
Q ss_pred CeeEEEEcCCC-eE-EEEeCCCcEEEEECCCCeEEE--------------------------------------------
Q 009614 390 EVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLR-------------------------------------------- 423 (531)
Q Consensus 390 ~I~~l~~sp~~-~l-~s~s~Dg~V~lwdl~~~~~l~-------------------------------------------- 423 (531)
...+..|.|++ ++ ++...+..|-++|..+++.+.
T Consensus 173 ~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 173 FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred cccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccc
Confidence 44566666766 33 333445566666665554333
Q ss_pred -----------EeecCCceEEEEEeeCCCCEEEEE----eCCCeEEEEeCCCCeEEEecC--CCCceEEEEEccCCCEEE
Q 009614 424 -----------VFSHNNYVTSVAFNPVDDNYFISG----SIDGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKGGI 486 (531)
Q Consensus 424 -----------~~~h~~~V~sv~fsp~d~~~l~sg----s~Dg~I~Iwd~~~~~~~~~~~--~~~~v~~v~~spdg~~l~ 486 (531)
.+...+.-.-+..+| +++++.+. ...++|.|+|..+.+++.... ....+..+.|++||+.+.
T Consensus 253 v~d~~~wkvv~~I~~~G~glFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 253 VHDDYAWKVVKTIPTQGGGLFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp -STTTBTSEEEEEE-SSSS--EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred cchhhcCeEEEEEECCCCcceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEE
Confidence 222222224466688 88888887 445899999999998775433 223489999999999887
Q ss_pred EEeCCC--cEEEEeCCCCeEEEEee
Q 009614 487 VGTMTG--NCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 487 sgs~dg--~I~iwd~~~~~l~~~~~ 509 (531)
++..++ .|.+||..+.+++..++
T Consensus 332 vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 332 VSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCEEEEEECCCcEEEEEEE
Confidence 766544 59999999999998877
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=7.9e-10 Score=115.26 Aligned_cols=192 Identities=17% Similarity=0.209 Sum_probs=129.1
Q ss_pred cccceeeeCCCCeEEeeecC---CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCC--cEEE
Q 009614 237 RHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TVRV 310 (531)
Q Consensus 237 ~~~s~~fspdg~~lasgs~d---g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg--~I~i 310 (531)
.+.+..|+|||++|+..... ..|++|++.++... .+..+.+.+.+++|+|||+.|+. .+.++ .|.+
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 34557899999999876543 47999998764322 23345566778999999997764 44444 4777
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
|++.++... .+..+...
T Consensus 263 ~d~~~~~~~---------------------------------------------------------------~l~~~~~~ 279 (417)
T TIGR02800 263 MDLDGKQLT---------------------------------------------------------------RLTNGPGI 279 (417)
T ss_pred EECCCCCEE---------------------------------------------------------------ECCCCCCC
Confidence 776554311 11112223
Q ss_pred eeEEEEcCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC---eEEEEeCCCCeE
Q 009614 391 VLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQV 463 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~-Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg---~I~Iwd~~~~~~ 463 (531)
.....|+|++ .|+..+. .+ .|.++|+.+++......+...+..+.|+| ++++++.++.++ .|.+||+.++..
T Consensus 280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 3456789998 6665543 33 58888888777655544667778899999 899998888776 899999988765
Q ss_pred EEecCCCCceEEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 009614 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKD 501 (531)
Q Consensus 464 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~~ 501 (531)
..+... .......|+|||++|+..+.++ .+++.+...
T Consensus 359 ~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 359 RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 444332 2335568999999998877754 355666543
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.25 E-value=1.3e-09 Score=113.68 Aligned_cols=177 Identities=18% Similarity=0.146 Sum_probs=125.6
Q ss_pred CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcccCccccceecCCCCCeeE
Q 009614 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL 332 (531)
Q Consensus 256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~ 332 (531)
...|.++|..... .+.+..+...+...+|+|||++|+.+..+ ..|++||+.+++..
T Consensus 169 ~~~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~------------- 227 (417)
T TIGR02800 169 RYELQVADYDGAN--------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE------------- 227 (417)
T ss_pred cceEEEEcCCCCC--------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-------------
Confidence 3467777765322 12355577789999999999999887654 47889998765421
Q ss_pred EEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-EEeCCC-
Q 009614 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK- 409 (531)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~-s~s~Dg- 409 (531)
.+..+.+.+..++|+|++ .|+ +.+.++
T Consensus 228 --------------------------------------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 228 --------------------------------------------------KVASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred --------------------------------------------------EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 011123345568899998 554 444444
Q ss_pred -cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC-C--eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEE
Q 009614 410 -TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485 (531)
Q Consensus 410 -~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D-g--~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l 485 (531)
.|.+||+.++.......+........|+| ++++|+..+.. + .|+++|+.+++...+..+...+..+.|+|+|++|
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEE
Confidence 58899998887655555555566789999 88888766543 3 6888898888776666566677889999999999
Q ss_pred EEEeCCC---cEEEEeCCCCeE
Q 009614 486 IVGTMTG---NCRFYDIKDNQL 504 (531)
Q Consensus 486 ~sgs~dg---~I~iwd~~~~~l 504 (531)
+.++.++ .|.+||+.++..
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCe
Confidence 9988776 799999987654
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.2e-09 Score=113.97 Aligned_cols=177 Identities=19% Similarity=0.173 Sum_probs=116.3
Q ss_pred CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcccCccccceecCCCCCeeEE
Q 009614 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (531)
Q Consensus 257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~ 333 (531)
..|.++|...... +.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG~~~--------~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------- 234 (427)
T PRK02889 176 YQLQISDADGQNA--------QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------- 234 (427)
T ss_pred cEEEEECCCCCCc--------eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------
Confidence 4677777643221 2345677889999999999999887643 358999987664210
Q ss_pred EeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-EEeCCCcE
Q 009614 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTV 411 (531)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~-s~s~Dg~V 411 (531)
+....+.+...+|+|+| .|+ +.+.++..
T Consensus 235 --------------------------------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 235 --------------------------------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred --------------------------------------------------eecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 11122344578999999 554 56778876
Q ss_pred EEEE--CCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CCeEEEEe--CCCCeEEEecCCCCceEEEEEccCCCEEE
Q 009614 412 RLWQ--VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWE--VRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (531)
Q Consensus 412 ~lwd--l~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd--~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 486 (531)
.||. +.++.......+........|+| |++.|+..+. +|...||. +.++...............+|+|||++|+
T Consensus 265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred eEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 6665 55555433334555667789999 8988776554 45555664 45555443332233345678999999998
Q ss_pred EEeCCC---cEEEEeCCCCeEE
Q 009614 487 VGTMTG---NCRFYDIKDNQLY 505 (531)
Q Consensus 487 sgs~dg---~I~iwd~~~~~l~ 505 (531)
..+.++ .|.+||+.+++..
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeE
Confidence 877654 5999999887654
No 233
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.24 E-value=4.8e-10 Score=106.27 Aligned_cols=225 Identities=19% Similarity=0.306 Sum_probs=146.2
Q ss_pred cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
.+.++.+.++....-|-..-+++.+.|.+++||-..+..+..... ...-..+++++.+.++...|+.|-.+|++.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-----hhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 356788888887777888889999999999999766544332221 233467899999999999999999999998
Q ss_pred EEEccc----CccccceecCCCCCeeEEEeecCCccee-------eee-cccc-ccccccccccC----CCceEEEeCCc
Q 009614 310 VWKVIE----HERLDGFDVQDTDPSCLYFTINHLSQLI-------PID-VDKE-KIDKTKSLRKS----SDLTCVVLPPK 372 (531)
Q Consensus 310 iWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~-~~~~~~~~~~~----~~~~~~~~~~~ 372 (531)
-+.+.. ...++....+...+..+.+...+...+. ++. ...+ .+......... .+..+......
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 886533 2233333334444433333322211111 110 0110 00000000000 01111111111
Q ss_pred cc--------cccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEeecCCceEEEEEeeCCC
Q 009614 373 VF--------RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFSHNNYVTSVAFNPVDD 441 (531)
Q Consensus 373 ~~--------~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~--~~l~~~~h~~~V~sv~fsp~d~ 441 (531)
.+ ...-.++.++.+|.+.+.+++|.+.. .|.+|..|..|.+||+..+ .....+.|.+.|..++.-+ .-
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t 252 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HT 252 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hh
Confidence 11 11235678899999999999999987 9999999999999999754 4445556999999999888 77
Q ss_pred CEEEEEeCCCeEEEEeCCC
Q 009614 442 NYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 442 ~~l~sgs~Dg~I~Iwd~~~ 460 (531)
..+++++.||.|-+|++..
T Consensus 253 ~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeeccCCCeEEEEeccc
Confidence 8899999999999999864
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2e-09 Score=112.69 Aligned_cols=195 Identities=21% Similarity=0.212 Sum_probs=123.7
Q ss_pred eccccceeeeCCCCeEEeeecC---CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCC--cE
Q 009614 235 IDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TV 308 (531)
Q Consensus 235 ~~~~~s~~fspdg~~lasgs~d---g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg--~I 308 (531)
...+....|+|||+.|+..+.+ ..|.+|++..+... .+....+.+....|+|||+.|+. ...+| .|
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~--------~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE--------QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE--------EccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 3445567999999999875533 36888898755432 12222344557899999998874 44455 46
Q ss_pred EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
.+||+.++... .+..+.
T Consensus 270 y~~d~~~~~~~---------------------------------------------------------------~lt~~~ 286 (430)
T PRK00178 270 YVMDLASRQLS---------------------------------------------------------------RVTNHP 286 (430)
T ss_pred EEEECCCCCeE---------------------------------------------------------------EcccCC
Confidence 66676554311 111222
Q ss_pred CCeeEEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC-C--eEEEEeCCCC
Q 009614 389 SEVLDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRC 461 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s-~Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D-g--~I~Iwd~~~~ 461 (531)
.......|+|+| .|+..+ .++ .|.++++.+++...............|+| ++++|+..+.+ + .|.+||+.++
T Consensus 287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCC
Confidence 334556899998 555444 333 57778888777544432333445678999 88888776643 3 5889999988
Q ss_pred eEEEecCCCCceEEEEEccCCCEEEEEeCC---CcEEEEeCCCC
Q 009614 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDN 502 (531)
Q Consensus 462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~~~ 502 (531)
+...+... .......|+|||++|+..+.+ ..+.++++..+
T Consensus 366 ~~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 366 SVRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CEEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 76544332 223356899999999887654 24677777543
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.21 E-value=2.4e-09 Score=100.89 Aligned_cols=255 Identities=13% Similarity=0.116 Sum_probs=160.8
Q ss_pred ccccceeeeCCCCeEEe-eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEc
Q 009614 236 DRHGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKV 313 (531)
Q Consensus 236 ~~~~s~~fspdg~~las-gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~ 313 (531)
+++.-+.|+.|..++++ ...++.|.+|++....... .+.....++..++|||||+.| .+..-|-.|.+|.+
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c-------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL 121 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC-------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSL 121 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEE-------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEe
Confidence 44555677777777665 5678899999998544322 366677899999999999755 55566999999999
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccc-------------------cccccCC-CceEEEeCCcc
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT-------------------KSLRKSS-DLTCVVLPPKV 373 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~-~~~~~~~~~~~ 373 (531)
.+.+... ++.+......+.+.++..-..+....+....... ..+.-+. +.-+.+|+.-.
T Consensus 122 ~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L 200 (447)
T KOG4497|consen 122 NTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL 200 (447)
T ss_pred ccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh
Confidence 8765432 2222333344444444332222222221111100 0011122 22344444322
Q ss_pred ccccCcceeEeecC-CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE------------------------------
Q 009614 374 FRLLEKPLHEFQGH-SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC------------------------------ 421 (531)
Q Consensus 374 ~~~~~~~~~~~~~h-~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~------------------------------ 421 (531)
- ...+.-| .-++..++|+|.+ +|+.|+.|+.+|+.+--+-+.
T Consensus 201 e------ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~ 274 (447)
T KOG4497|consen 201 E------YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLH 274 (447)
T ss_pred h------heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcc
Confidence 1 1111222 3578999999977 999999999999865311100
Q ss_pred ------------------------------EEEee-------cCCceEEEEEeeCCCCEEEEEeC--CCeEEEEeCCCCe
Q 009614 422 ------------------------------LRVFS-------HNNYVTSVAFNPVDDNYFISGSI--DGKVRIWEVRRCQ 462 (531)
Q Consensus 422 ------------------------------l~~~~-------h~~~V~sv~fsp~d~~~l~sgs~--Dg~I~Iwd~~~~~ 462 (531)
++.++ ....+.-++|++ |..|+++-.. -..+-+||++..+
T Consensus 275 ~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 275 HCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred cccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhh
Confidence 00000 112356689999 8888888543 3579999999988
Q ss_pred EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 463 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~ 505 (531)
+........+|.+..|.|....|+.+.....+++|.......+
T Consensus 354 l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 354 LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence 8776667789999999999998998888888999998865443
No 236
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=2.7e-09 Score=101.78 Aligned_cols=204 Identities=17% Similarity=0.236 Sum_probs=134.2
Q ss_pred ccccceeeeCCCC-eEEeeecCCeEEEEeCCCCccccc-----ccccceEE--cccCCCEEEEEEccCCCEEEEEeC-CC
Q 009614 236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEF--LAHEGSILTMKFSLDGQYLASGGE-DG 306 (531)
Q Consensus 236 ~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~-----~~~~~~~l--~~H~~~I~~l~fspdg~~Lasgs~-Dg 306 (531)
..+.+++|.|.+. .++.|.. +-|.+|.......... .....+.+ .+| .+|+.|.|++||..|++++. |.
T Consensus 141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 3456789999664 5666766 4589997763221111 11112223 345 68999999999999999985 67
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
.|.|||+.++..+.- . ..
T Consensus 219 si~iWdpdtg~~~pL------------------------------------------------------------~--~~ 236 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPL------------------------------------------------------------I--PK 236 (445)
T ss_pred eEEEEcCCCCCcccc------------------------------------------------------------c--cc
Confidence 899999988764211 1 11
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECC-CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC---
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--- 461 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~-~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~--- 461 (531)
..+.+.-+.|+|++ +|+++.-|+..++|+.. +..+.+-.-..+.|...+|+| +|.+|+-.+. |.-++|.+.-.
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~ 314 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGED 314 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCC
Confidence 34678889999999 99999999999999654 334444334566999999999 7776554432 33445543210
Q ss_pred ----------eEE---Ee-----c----CCCCceEEEEEccCCCEEEEEeCCC--------cEEEEeCCCCeEE
Q 009614 462 ----------QVV---DY-----T----DIREIVSAVCYCPDGKGGIVGTMTG--------NCRFYDIKDNQLY 505 (531)
Q Consensus 462 ----------~~~---~~-----~----~~~~~v~~v~~spdg~~l~sgs~dg--------~I~iwd~~~~~l~ 505 (531)
... .+ . -..+.+.+++|.|.|.+||+.-..+ .|.+||++..-.+
T Consensus 315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 011 11 1 1245788999999999999976543 3677887654433
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=4.1e-09 Score=110.49 Aligned_cols=215 Identities=17% Similarity=0.166 Sum_probs=128.5
Q ss_pred eeccccceeeeCCCCeEEeeec-C--CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCCc--
Q 009614 234 IIDRHGSATLKPGDHELTLGQR-M--RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGT-- 307 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~-d--g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~-- 307 (531)
....+.+..|+|||+.|+..+. + ..|.+||+..+... .+....+.....+|+|||+.|+. .+.+|.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--------~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--------KVTSFPGINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--------EecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 3345556899999999987543 2 35888888654321 11112233446899999998865 455665
Q ss_pred EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (531)
|.+||+.+++. ..+..+
T Consensus 288 Iy~~dl~tg~~---------------------------------------------------------------~~lt~~ 304 (448)
T PRK04792 288 IYVVDIATKAL---------------------------------------------------------------TRITRH 304 (448)
T ss_pred EEEEECCCCCe---------------------------------------------------------------EECccC
Confidence 55556544321 111223
Q ss_pred CCCeeEEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCC
Q 009614 388 SSEVLDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRR 460 (531)
Q Consensus 388 ~~~I~~l~~sp~~-~l~s~s-~Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~ 460 (531)
.......+|+|++ .|+..+ .++ .|.++|+.+++..............+|+| ++++|+..+. ++ .|.++|+.+
T Consensus 305 ~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 305 RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCC
Confidence 3345567899998 555444 333 46677887777554432333445678999 8888877654 33 466678888
Q ss_pred CeEEEecCCCCceEEEEEccCCCEEEEEeCC-Cc--EEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 461 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-g~--I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
++...+.... ......|+|||+.|+..+.+ |. ++++++. ++....... +...+...+|+|
T Consensus 384 g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~--------~~g~~~~p~Wsp 446 (448)
T PRK04792 384 GAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPA--------GQGEVKSPAWSP 446 (448)
T ss_pred CCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--------CCCCcCCCccCC
Confidence 7765443321 22345899999988776654 33 6777774 444333221 123455666666
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.19 E-value=5.2e-10 Score=105.30 Aligned_cols=193 Identities=18% Similarity=0.261 Sum_probs=133.3
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcccCccc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEHERL 319 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~I~iWd~~~~~~~ 319 (531)
.+|+|+|+++|+.+.- ++.|.|..+.+. .|.+.. -..|.-+.|..|..+++. +..|+.|.+|++...+-
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~-------~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew- 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQL-------HQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW- 83 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhH-------HHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-
Confidence 5899999999999876 888988874332 111111 356788899988876655 46788999999865442
Q ss_pred cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~ 399 (531)
...+.....++..++|+|+
T Consensus 84 -------------------------------------------------------------~ckIdeg~agls~~~WSPd 102 (447)
T KOG4497|consen 84 -------------------------------------------------------------YCKIDEGQAGLSSISWSPD 102 (447)
T ss_pred -------------------------------------------------------------EEEeccCCCcceeeeECCC
Confidence 2233445678899999999
Q ss_pred C--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC--------------------------
Q 009614 400 G--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-------------------------- 451 (531)
Q Consensus 400 ~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg-------------------------- 451 (531)
| .|.+...|-.|.+|.+.+..+...--.+..+..++|+| ++++.+.++.-.
T Consensus 103 grhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl 181 (447)
T KOG4497|consen 103 GRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL 181 (447)
T ss_pred cceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence 9 67778889999999999887765554455668889999 888877765321
Q ss_pred ----------eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614 452 ----------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 452 ----------~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~ 505 (531)
.+.+||---.-.+....-.-.+..++|+|.+++|++|+.|+.+||.+--+-+.+
T Consensus 182 tgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 182 TGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred cCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 112222111101111112346788999999999999999999988765444333
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=9.1e-10 Score=112.96 Aligned_cols=262 Identities=17% Similarity=0.199 Sum_probs=176.3
Q ss_pred ccceeeeCCCCeEEeeecCCeEEEEeCCCCcc--------cccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--------ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (531)
Q Consensus 238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~--------~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 309 (531)
..+++|+....++|+|+.||.++|..+.+... ..+++.+.|++.||.+.|.-+.|+.+.+.|-|...+|.|.
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 34689999999999999999999998765432 2346677899999999999999999999999999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
+|-+-.+.-...+...........++++..+.-+++.. .|+.+++-.....++-++.+ ++ .
T Consensus 97 VWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY--------------eDGavIVGsvdGNRIwgKeL---kg--~ 157 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY--------------EDGAVIVGSVDGNRIWGKEL---KG--Q 157 (1189)
T ss_pred EEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE--------------ccCCEEEEeeccceecchhc---ch--h
Confidence 99998887666665444444444444444433333322 23333333332222222222 21 1
Q ss_pred CeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-------eEEEEee-----cCCceEEEEEe--------eCCCCEEEEEe
Q 009614 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGID-------RCLRVFS-----HNNYVTSVAFN--------PVDDNYFISGS 448 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~-------~~l~~~~-----h~~~V~sv~fs--------p~d~~~l~sgs 448 (531)
-...+.|+++. .++.+-..|.+.+||.+.. .|..... .+..|..+.|. | +...|+.+-
T Consensus 158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p-drP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP-DRPRLAVCY 236 (1189)
T ss_pred eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC-CCCEEEEEE
Confidence 23367899998 7777778899999997643 2211111 33446667764 3 677899999
Q ss_pred CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC---------cEEEEeCCCCeEEEEeeeeecccccCC
Q 009614 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---------NCRFYDIKDNQLYQQNQICLQGKKKLP 519 (531)
Q Consensus 449 ~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---------~I~iwd~~~~~l~~~~~~~~~~~kk~~ 519 (531)
..|.+.|..-.+..-....+..-.+..+.|+++|..|++++.+. .|++|..- |+.+. .-|.+
T Consensus 237 ~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~g--------tlkvp 307 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVG--------TLKVP 307 (1189)
T ss_pred cCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheE--------EEecC
Confidence 99999887554433222333446788999999999999988753 45555543 33333 34567
Q ss_pred CceeeeEEE
Q 009614 520 GKRITGFQV 528 (531)
Q Consensus 520 ~~~It~l~f 528 (531)
++.||++.|
T Consensus 308 g~~It~lsW 316 (1189)
T KOG2041|consen 308 GSCITGLSW 316 (1189)
T ss_pred CceeeeeEE
Confidence 789999876
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=7e-10 Score=111.42 Aligned_cols=193 Identities=16% Similarity=0.253 Sum_probs=145.0
Q ss_pred eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCC
Q 009614 249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTD 328 (531)
Q Consensus 249 ~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 328 (531)
+++.| ....|+-.++..+... +.+.-..+.++++..++...+|++|+.+|.|..||.+.......+......
T Consensus 148 ly~~g-sg~evYRlNLEqGrfL-------~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v 219 (703)
T KOG2321|consen 148 LYLVG-SGSEVYRLNLEQGRFL-------NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV 219 (703)
T ss_pred EEEee-cCcceEEEEccccccc-------cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccccc
Confidence 34444 4455666677654422 224445689999999998889999999999999999877665544322110
Q ss_pred CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeC
Q 009614 329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA 407 (531)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~ 407 (531)
. -+........|+++.|+.+| .++.|+.
T Consensus 220 ~---------------------------------------------------s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 220 N---------------------------------------------------SHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred C---------------------------------------------------CCccccccCcceEEEecCCceeEEeecc
Confidence 0 00011123459999999999 9999999
Q ss_pred CCcEEEEECCCCeEEEEeecC--CceEEEEEeeCCCC-EEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCE
Q 009614 408 DKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484 (531)
Q Consensus 408 Dg~V~lwdl~~~~~l~~~~h~--~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~ 484 (531)
+|.|.|||+++.+++..-.|. -+|..+.|.+.++. .+++ .....++|||-.+++..........+..+|+-|++-+
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGM 327 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCCcCceeeecCCce
Confidence 999999999999998887765 57889999874333 4444 4557899999999999988888888999999999999
Q ss_pred EEEEeCCCcEEEEeCCC
Q 009614 485 GIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 485 l~sgs~dg~I~iwd~~~ 501 (531)
+++|-.++.+..|=+..
T Consensus 328 ~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPS 344 (703)
T ss_pred EEEecCCCcceeEEccc
Confidence 99999998888776654
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.18 E-value=9e-10 Score=119.33 Aligned_cols=190 Identities=17% Similarity=0.258 Sum_probs=134.7
Q ss_pred EEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614 279 EFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (531)
Q Consensus 279 ~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (531)
.+..|...|..++.++. +.+++|||.||+|++|+......-. ...
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~s~---------------------------- 1088 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------GSA---------------------------- 1088 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------cee----------------------------
Confidence 46778999999998775 4899999999999999986533110 000
Q ss_pred cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe-------EEEEee--c
Q 009614 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-------CLRVFS--H 427 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~-------~l~~~~--h 427 (531)
+...++..-...+.++...+++ .+|.++.||.|++.++.... +.+... .
T Consensus 1089 ---------------------rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~ 1147 (1431)
T KOG1240|consen 1089 ---------------------RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK 1147 (1431)
T ss_pred ---------------------eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccC
Confidence 0012222245678888888888 99999999999999987621 111111 2
Q ss_pred CCce-EEEEEeeCCCC-EEEEEeCCCeEEEEeCCCCeEE---EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 428 NNYV-TSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 428 ~~~V-~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~~~~~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
.+.+ ..-+|...... .++.+..-+.|..||+++.... +.....+.|++++.+|.++++++|+..|.+-+||++=+
T Consensus 1148 ~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 2333 33345443344 7788888899999999987644 34555788999999999999999999999999999988
Q ss_pred eEEEEeeeeecccccCCCceeeeEEEee
Q 009614 503 QLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 503 ~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
.++..++.+ +...|+.+..+|
T Consensus 1228 ~~i~sw~~P-------~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1228 VPILSWEHP-------ARAPIRHVWLCP 1248 (1431)
T ss_pred ceeecccCc-------ccCCcceEEeec
Confidence 888776543 224555555554
No 242
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=8.5e-11 Score=117.09 Aligned_cols=219 Identities=15% Similarity=0.219 Sum_probs=156.1
Q ss_pred cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (531)
Q Consensus 228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 307 (531)
+..+++|..++..++--.+.+-++++++|.+|++|.++....+..+..+.-++++|+.+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 445788888888866556777889999999999999997776666555666789999999999999998888765 889
Q ss_pred EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (531)
Q Consensus 308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 387 (531)
|++||.--+..+..+.... -.+.
T Consensus 806 iHlWDPFigr~Laq~~dap---------------------------------------------------------k~~a 828 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAP---------------------------------------------------------KEGA 828 (1034)
T ss_pred ceeecccccchhHhhhcCc---------------------------------------------------------ccCC
Confidence 9999986655433221000 0111
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
.+.|.++.--... .++-++...+|+++|.+.......++ .+..+.+++..| .|+.++++-..|.|.+.|.++
T Consensus 829 ~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 829 GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred CceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC
Confidence 2233333211112 44445788999999999887766664 346689999999 999999999999999999999
Q ss_pred CeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEE-EeCCCCeEEEE
Q 009614 461 CQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRF-YDIKDNQLYQQ 507 (531)
Q Consensus 461 ~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i-wd~~~~~l~~~ 507 (531)
++++. |.........++ .|..+.|+....|.++.+ |...++....+
T Consensus 908 G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 908 GKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred CceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence 99885 554444443333 355566777777777777 77666654443
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=5e-10 Score=107.84 Aligned_cols=177 Identities=12% Similarity=0.208 Sum_probs=136.2
Q ss_pred eCCCC-eEEeeecC--CeEEEEeCCCCcccccccccceEEcccC--CCEEEEEEccC--CCEEEEEeCCCcEEEEEcccC
Q 009614 244 KPGDH-ELTLGQRM--RRVRVHPVKKQSRELSSLYTGQEFLAHE--GSILTMKFSLD--GQYLASGGEDGTVRVWKVIEH 316 (531)
Q Consensus 244 spdg~-~lasgs~d--g~I~vwd~~~~~~~~~~~~~~~~l~~H~--~~I~~l~fspd--g~~Lasgs~Dg~I~iWd~~~~ 316 (531)
++... .+|+|+.. ..++|||+....+.++.-.......+-. -.++++.|-+. ...||+++.-+.|++||...+
T Consensus 157 ~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q 236 (412)
T KOG3881|consen 157 TDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ 236 (412)
T ss_pred CCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc
Confidence 34444 45668888 8999999987654443322222222222 24567889886 789999999999999998755
Q ss_pred ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (531)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 396 (531)
+ +|+..+.--..+|+++..
T Consensus 237 R-------------------------------------------------------------RPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 237 R-------------------------------------------------------------RPVAQFDFLENPISSTGL 255 (412)
T ss_pred C-------------------------------------------------------------cceeEeccccCcceeeee
Confidence 4 344555555678999999
Q ss_pred cCCC-eEEEEeCCCcEEEEECCCCeEEEE-ee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCce
Q 009614 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV 473 (531)
Q Consensus 397 sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~-~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v 473 (531)
-|++ .+++|..-+.+..||++.++.+.. +. ..+.|++|..+| ...++++++.|..|||+|+.+.+++.-......+
T Consensus 256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~l 334 (412)
T KOG3881|consen 256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRL 334 (412)
T ss_pred cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhccc
Confidence 9999 999999999999999999998877 43 788999999999 8899999999999999999998877655566677
Q ss_pred EEEEEccCC
Q 009614 474 SAVCYCPDG 482 (531)
Q Consensus 474 ~~v~~spdg 482 (531)
+.|-+.++-
T Consensus 335 t~il~~~~~ 343 (412)
T KOG3881|consen 335 TFILLRDDV 343 (412)
T ss_pred cEEEecCCc
Confidence 777776543
No 244
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.8e-10 Score=113.53 Aligned_cols=208 Identities=19% Similarity=0.241 Sum_probs=144.6
Q ss_pred ceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC-CCCeeEEEeecCCcceeeeeccccccccc
Q 009614 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (531)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (531)
...|..|.+.|..|.|+..|..|++|+.|..|.+||+..+.....+.... ..+....|.+.....-
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~t------------- 201 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRT------------- 201 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcC-------------
Confidence 34578899999999999999999999999999999998887655543221 1111112222222111
Q ss_pred cccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee----cCC
Q 009614 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNN 429 (531)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~ 429 (531)
++..+.++.+.+-........ .....+..|.+.|.-++.-|.. .|++++.|+.+.-+|++++.+...+. +..
T Consensus 202 -i~~~s~dgqvr~s~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 202 -IVTSSRDGQVRVSEILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred -ceeccccCceeeeeeccccce-ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 122233333322221111110 1134456799999999999987 89999999999999999876655542 333
Q ss_pred ---ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE------E-Eec------CCCCceEEEEEccCCCEEEEEeCCCc
Q 009614 430 ---YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV------V-DYT------DIREIVSAVCYCPDGKGGIVGTMTGN 493 (531)
Q Consensus 430 ---~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~------~-~~~------~~~~~v~~v~~spdg~~l~sgs~dg~ 493 (531)
...+|+.+|...++|++|+.|..++|||.+.-.. + ++. ...-.|++++|+.++.-|.++-.|-.
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 6789999997778999999999999999876321 1 111 23446999999988888888888889
Q ss_pred EEEEeC
Q 009614 494 CRFYDI 499 (531)
Q Consensus 494 I~iwd~ 499 (531)
|+++.-
T Consensus 360 IYLF~~ 365 (559)
T KOG1334|consen 360 IYLFNK 365 (559)
T ss_pred eEEecc
Confidence 999954
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=9.7e-09 Score=106.85 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=80.2
Q ss_pred CeeEEEEcCCC-eEEEEe-CCCcEEEE--ECCC-CeEEEEee-cCCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCC
Q 009614 390 EVLDLSWSKNG-FLLSSS-ADKTVRLW--QVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRR 460 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s-~Dg~V~lw--dl~~-~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~ 460 (531)
.....+|+|+| .|+..+ .++...|| ++.. +.....+. +...+....|+| |+++|+..+.+ ..|.+||+.+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence 34567999999 666554 46655555 4432 22233333 445678899999 89988876543 4799999999
Q ss_pred CeEEEecCCCCceEEEEEccCCCEEEEEeC---CCcEEEEeCCCCeEE
Q 009614 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLY 505 (531)
Q Consensus 461 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---dg~I~iwd~~~~~l~ 505 (531)
++...+......+....|+|||++|+.... ...|+++|+.+++..
T Consensus 361 g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 361 GRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 987766554456778999999998876543 346888899887654
No 246
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=7.6e-08 Score=95.90 Aligned_cols=241 Identities=10% Similarity=0.050 Sum_probs=147.5
Q ss_pred eeeCCCCeEEeee----------cCCeEEEEeCCCCcccccccccceEEcc-------cCCCEEEEEEccCCCEEEEEe-
Q 009614 242 TLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLA-------HEGSILTMKFSLDGQYLASGG- 303 (531)
Q Consensus 242 ~fspdg~~lasgs----------~dg~I~vwd~~~~~~~~~~~~~~~~l~~-------H~~~I~~l~fspdg~~Lasgs- 303 (531)
.++|||+.+.++. .+..|.|||..+.... .++.- ....-..++++|||++|+...
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~-------~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~ 124 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI-------ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF 124 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE-------eEEccCCCchhhccCccceEEECCCCCEEEEecC
Confidence 3899999887654 4899999999865532 12221 112344789999999998776
Q ss_pred C-CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614 304 E-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (531)
Q Consensus 304 ~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (531)
. +..|.+.|+.+++.+.++..+. |....+...........+.... .+....++....-....+.....++
T Consensus 125 ~p~~~V~VvD~~~~kvv~ei~vp~----~~~vy~t~e~~~~~~~~Dg~~~----~v~~d~~g~~~~~~~~vf~~~~~~v- 195 (352)
T TIGR02658 125 SPSPAVGVVDLEGKAFVRMMDVPD----CYHIFPTANDTFFMHCRDGSLA----KVGYGTKGNPKIKPTEVFHPEDEYL- 195 (352)
T ss_pred CCCCEEEEEECCCCcEEEEEeCCC----CcEEEEecCCccEEEeecCceE----EEEecCCCceEEeeeeeecCCcccc-
Confidence 3 7899999999999988887633 2222222111111111111111 0111111111111111100000000
Q ss_pred EeecCCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCC-----CeEEEEee--------cCCceEEEEEeeCCCCEEEEE
Q 009614 383 EFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGI-----DRCLRVFS--------HNNYVTSVAFNPVDDNYFISG 447 (531)
Q Consensus 383 ~~~~h~~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~-----~~~l~~~~--------h~~~V~sv~fsp~d~~~l~sg 447 (531)
. ..+ .+.+ +| ++..... |+|.+.|+.. ......+. .+..+.-++++| +++.+++.
T Consensus 196 --~--~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~ 265 (352)
T TIGR02658 196 --I--NHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLL 265 (352)
T ss_pred --c--cCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEE
Confidence 0 111 3345 66 5555554 9999999643 33333332 233445599999 77777664
Q ss_pred e----------CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCeEEEEe
Q 009614 448 S----------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 448 s----------~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~~~~l~~~~ 508 (531)
. ..+.|.++|..+++++........+..++++|||+ +|++.. .++.|.++|+.+++.+.++
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 2 12479999999999998777778999999999999 777666 5788999999999998876
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=4.5e-09 Score=106.39 Aligned_cols=181 Identities=18% Similarity=0.247 Sum_probs=134.7
Q ss_pred cCCCEEEEEeCCCcEEEEEcccCccccceecCCC-CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc
Q 009614 294 LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (531)
Q Consensus 294 pdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (531)
|-+.|+|....||.++||+..+++....+..... ...|. +..|..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~---------------------------------~~~w~L- 48 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCT---------------------------------YTKWGL- 48 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcce---------------------------------eEEEEE-
Confidence 4567999999999999999999887666543211 11121 122210
Q ss_pred cccccCcceeEeecCCCCeeEEEE----cCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEE
Q 009614 373 VFRLLEKPLHEFQGHSSEVLDLSW----SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYF 444 (531)
Q Consensus 373 ~~~~~~~~~~~~~~h~~~I~~l~~----sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l 444 (531)
.....|. ...++.| +.+. .++-|...|.|.+|++..++....+. |.+.|+++.++. +-..|
T Consensus 49 --~~~~s~~--------k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ci 117 (541)
T KOG4547|consen 49 --SADYSPM--------KWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCI 117 (541)
T ss_pred --EeccchH--------HHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCce
Confidence 0000111 1111111 1222 88899999999999999999888875 999999999998 88899
Q ss_pred EEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCcee
Q 009614 445 ISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (531)
Q Consensus 445 ~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~I 523 (531)
.+++.|+.+..|+...++.+. +......+.+++++|||..+++|+ +.|++||+++++++..+..+ +..|
T Consensus 118 yS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh--------~s~v 187 (541)
T KOG4547|consen 118 YSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH--------GSPV 187 (541)
T ss_pred EecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC--------Ccce
Confidence 999999999999999998884 777888899999999999999987 68999999999999877633 4566
Q ss_pred eeEEEe
Q 009614 524 TGFQVV 529 (531)
Q Consensus 524 t~l~f~ 529 (531)
..++|.
T Consensus 188 ~t~~f~ 193 (541)
T KOG4547|consen 188 RTLSFT 193 (541)
T ss_pred EEEEEE
Confidence 666664
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=9.8e-10 Score=117.55 Aligned_cols=149 Identities=23% Similarity=0.416 Sum_probs=124.2
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 320 (531)
+-++++.-++++|+.-+.|.+|.....+... -+.||.+.|..+.|+.||++++++++|.++++|++.+.+...
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG 211 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcc-------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence 4567777889999999999999987322221 478999999999999999999999999999999998776321
Q ss_pred ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC
Q 009614 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (531)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~ 400 (531)
....+|+..|..+.+.|+
T Consensus 212 -------------------------------------------------------------~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 212 -------------------------------------------------------------CTGFGHSARVWACCFLPN- 229 (967)
T ss_pred -------------------------------------------------------------cccccccceeEEEEeccc-
Confidence 224579999999999999
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEee-c-CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 401 FLLSSSADKTVRLWQVGIDRCLRVFS-H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~-h-~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
.+++++.|.+.++|+....+. ..+. | ...++.++..+ +...+++++.|+.+++|++..
T Consensus 230 ~i~t~gedctcrvW~~~~~~l-~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQL-EVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEeccceEEEEEeccccee-hhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 999999999999997654443 3553 4 45789999998 888999999999999999864
No 249
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=2.4e-10 Score=127.47 Aligned_cols=200 Identities=19% Similarity=0.315 Sum_probs=153.7
Q ss_pred eeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (531)
Q Consensus 232 ~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 311 (531)
..+.+.+.++.-+|...+.++|+.||.|++|....+..... .+ .+....|+.+.|+.+|+.+..+..||.+.+|
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~----~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC----FR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE----ee--ccCcchhhhhhhcccCCceeeeccCCceeec
Confidence 33445556678899999999999999999999886554322 11 1233789999999999999999999999999
Q ss_pred EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (531)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 391 (531)
.+.. ++....+.|....
T Consensus 2279 q~~p---------------------------------------------------------------k~~~s~qchnk~~ 2295 (2439)
T KOG1064|consen 2279 QASP---------------------------------------------------------------KPYTSWQCHNKAL 2295 (2439)
T ss_pred ccCC---------------------------------------------------------------cceeccccCCccc
Confidence 8741 2344456788888
Q ss_pred eEEEEcCCCeEEEE---eCCCcEEEEECCC--CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614 392 LDLSWSKNGFLLSS---SADKTVRLWQVGI--DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (531)
Q Consensus 392 ~~l~~sp~~~l~s~---s~Dg~V~lwdl~~--~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~ 466 (531)
.++.|... .++++ +.++.+.+||.-- +..+....|.+.++++++-| ..++|++|+.+|.|++||++..++.+.
T Consensus 2296 ~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2296 SDFRFIGS-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred cceeeeeh-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHH
Confidence 88888763 44444 3578899999653 33333345999999999999 899999999999999999998887643
Q ss_pred cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
... +. ...++++|+..|.++||++..-.++..++..
T Consensus 2374 ~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2374 FQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred hhh--------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 222 33 5568999999999999999998888776644
No 250
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.08 E-value=6.6e-08 Score=98.27 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=127.8
Q ss_pred EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCe
Q 009614 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330 (531)
Q Consensus 251 asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 330 (531)
++-..++.|.|.|..+.+ ....+..+...-..+.|+|||+++++++.||.|.++|+.+++.+.++..
T Consensus 10 V~~~~~~~v~viD~~t~~-------~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------ 76 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNK-------VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------ 76 (369)
T ss_dssp EEEGGGTEEEEEETTT-S-------EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------
T ss_pred EEecCCCEEEEEECCCCe-------EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec------
Confidence 455678999999987533 2233444333334578999999999999999999999988875544321
Q ss_pred eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEE-eCC
Q 009614 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SAD 408 (531)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~-s~D 408 (531)
.....+++++++| +++++ ..+
T Consensus 77 ---------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 77 ---------------------------------------------------------GGNPRGIAVSPDGKYVYVANYEP 99 (369)
T ss_dssp ---------------------------------------------------------SSEEEEEEE--TTTEEEEEEEET
T ss_pred ---------------------------------------------------------CCCcceEEEcCCCCEEEEEecCC
Confidence 2235678999999 55544 578
Q ss_pred CcEEEEECCCCeEEEEee--------cCCceEEEEEeeCCCCEEEEEeC-CCeEEEEeCCCCeEE--EecCCCCceEEEE
Q 009614 409 KTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVV--DYTDIREIVSAVC 477 (531)
Q Consensus 409 g~V~lwdl~~~~~l~~~~--------h~~~V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd~~~~~~~--~~~~~~~~v~~v~ 477 (531)
+.+.++|.++.+.++.+. ....+..|..+| ....++..-. -+.|.+.|....+.+ .............
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc
Confidence 999999999999998875 134678888888 6665555544 488888887765433 4555666788899
Q ss_pred EccCCCEEEEE-eCCCcEEEEeCCCCeEEEEee
Q 009614 478 YCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 478 ~spdg~~l~sg-s~dg~I~iwd~~~~~l~~~~~ 509 (531)
|.|++++++++ ..++.|-++|+.++++.....
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred cCcccceeeecccccceeEEEeeccceEEEEee
Confidence 99999988665 557789999999998876544
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=2.7e-08 Score=104.24 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=117.8
Q ss_pred eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcccCccccceecCCCCCeeEEE
Q 009614 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLYF 334 (531)
Q Consensus 258 ~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~ 334 (531)
+|.++|..... .+.+..|...+....|+|||+.|+..+.+ ..|.+|++.+++...
T Consensus 180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-------------- 237 (430)
T PRK00178 180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-------------- 237 (430)
T ss_pred EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------
Confidence 46677765332 12345577789999999999999876643 358888886654210
Q ss_pred eecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-EEeCCC--c
Q 009614 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK--T 410 (531)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~-s~s~Dg--~ 410 (531)
+....+.+....|+|+| .|+ +...++ .
T Consensus 238 -------------------------------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 238 -------------------------------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred -------------------------------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 01112233467899999 554 455555 5
Q ss_pred EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEE
Q 009614 411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV 487 (531)
Q Consensus 411 V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 487 (531)
|.+||+.++.......+........|+| +++.|+..+. +| .|+++++.+++...+...........|+|||++|+.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8888999887665555666667789999 8887766553 33 588888888776544332333456789999999988
Q ss_pred EeCC-C--cEEEEeCCCCeEE
Q 009614 488 GTMT-G--NCRFYDIKDNQLY 505 (531)
Q Consensus 488 gs~d-g--~I~iwd~~~~~l~ 505 (531)
.+.+ + .|.+||+.+++..
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred EEccCCceEEEEEECCCCCEE
Confidence 7653 3 4888999887653
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=3e-08 Score=103.98 Aligned_cols=176 Identities=19% Similarity=0.195 Sum_probs=115.1
Q ss_pred eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcccCccccceecCCCCCeeEEE
Q 009614 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG--TVRVWKVIEHERLDGFDVQDTDPSCLYF 334 (531)
Q Consensus 258 ~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~ 334 (531)
.|.++|...... +.+..+...+....|+|||+.|+..+. ++ .|.+||+.+++...
T Consensus 199 ~l~i~d~dG~~~--------~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-------------- 256 (448)
T PRK04792 199 QLMIADYDGYNE--------QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-------------- 256 (448)
T ss_pred EEEEEeCCCCCc--------eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------
Confidence 566667654321 234456778899999999998887654 33 47777776553210
Q ss_pred eecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-EEeCCCc--
Q 009614 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKT-- 410 (531)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~-s~s~Dg~-- 410 (531)
+..+. +.....+|+|+| .|+ +.+.++.
T Consensus 257 ----------------------------------------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 257 ----------------------------------------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred ----------------------------------------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 01111 122357899999 554 4566665
Q ss_pred EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEE
Q 009614 411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV 487 (531)
Q Consensus 411 V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 487 (531)
|.+||+.+++......+.......+|+| |+++|+..+. ++ .|.++|+.+++...+..........+|+|||++|+.
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence 7788998887665555666678899999 8887766553 33 577778888776554333333455799999999887
Q ss_pred EeCC-C--cEEEEeCCCCeEE
Q 009614 488 GTMT-G--NCRFYDIKDNQLY 505 (531)
Q Consensus 488 gs~d-g--~I~iwd~~~~~l~ 505 (531)
.+.+ + .|.++|+.+++..
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred EEecCCceEEEEEECCCCCeE
Confidence 6653 3 4666788877653
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.04 E-value=9.3e-09 Score=95.76 Aligned_cols=229 Identities=15% Similarity=0.182 Sum_probs=145.8
Q ss_pred cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc---CCC-EEEEEeCCCcEEEEEcccCccccceecCCCC--
Q 009614 255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTD-- 328 (531)
Q Consensus 255 ~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~-- 328 (531)
..|++.+|++...+.. .+...| ..-+..+..|.|+. +|. .|+-+-.+|.|.++..........+......
T Consensus 44 R~Gkl~Lys~~d~~~~--~l~~~q--~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLS--PLDTLQ--CTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI 119 (339)
T ss_pred eccceEEEeecccccC--ccceee--eecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence 4578888888755432 222221 12346788888864 555 6677788899999987655443333221111
Q ss_pred ----CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eE
Q 009614 329 ----PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FL 402 (531)
Q Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l 402 (531)
..++.+...... .+.....+.+......... -+.++.++.|.-+++...|+... .+
T Consensus 120 ~~~~~lslD~~~~~~~----------------i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlv 181 (339)
T KOG0280|consen 120 SVVEALSLDISTSGTK----------------IFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLV 181 (339)
T ss_pred hheeeeEEEeeccCce----------------EEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceE
Confidence 111122221111 1111222222211111111 12355788899999999998765 89
Q ss_pred EEEeCCCcEEEEECC-CCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC-CeEEEecCCCCceEEEEE
Q 009614 403 LSSSADKTVRLWQVG-IDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCY 478 (531)
Q Consensus 403 ~s~s~Dg~V~lwdl~-~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~-~~~~~~~~~~~~v~~v~~ 478 (531)
++|+.|+.+..||++ .++++..- .|...|.+|.-+|..+.++++|+.|..|++||.++ ++++.-....+.|+.+++
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH 261 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEe
Confidence 999999999999999 44444432 38899999999987889999999999999999994 677766667799999999
Q ss_pred ccCCC-EEEEEeCCCcEEEEeCCCCeEE
Q 009614 479 CPDGK-GGIVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 479 spdg~-~l~sgs~dg~I~iwd~~~~~l~ 505 (531)
+|.-. .|+.++.-+-.+|-+.+.+...
T Consensus 262 ~p~~~~~lL~~CMh~G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 262 HPEIFHRLLAACMHNGAKILDSSDKVLE 289 (339)
T ss_pred cchhhhHHHHHHHhcCceEEEecccccc
Confidence 99532 2333334344777777665544
No 254
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=6.3e-08 Score=97.61 Aligned_cols=243 Identities=14% Similarity=0.213 Sum_probs=148.2
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC--EEEE-----EeCCCcEEEEEc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLAS-----GGEDGTVRVWKV 313 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Las-----gs~Dg~I~iWd~ 313 (531)
..|++|..+.|- -..+.+++|+....... .-+-|...|..+.+||.+. .+|+ .|.-+.|+||..
T Consensus 131 ~qfs~dEsl~ar-lv~nev~f~~~~~f~~~--------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~ 201 (566)
T KOG2315|consen 131 PQFSIDESLAAR-LVSNEVQFYDLGSFKTI--------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKY 201 (566)
T ss_pred cccccchhhhhh-hhcceEEEEecCCccce--------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecc
Confidence 467777665433 23577999998863222 1223678899999999643 4444 355678999998
Q ss_pred ccCccccceecCC-CCCeeEEEeecC--CcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 314 IEHERLDGFDVQD-TDPSCLYFTINH--LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 314 ~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
........+.... .....+.+.++. ...++....+-++.... --+...++++.... .....--...++
T Consensus 202 ~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~S----YYGEq~Lyll~t~g-----~s~~V~L~k~GP 272 (566)
T KOG2315|consen 202 PEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNAS----YYGEQTLYLLATQG-----ESVSVPLLKEGP 272 (566)
T ss_pred ccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCcc----ccccceEEEEEecC-----ceEEEecCCCCC
Confidence 6433322221111 112233444443 33333322222211111 11222333333321 011111224789
Q ss_pred eeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCCCeEE
Q 009614 391 VLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVV 464 (531)
Q Consensus 391 I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~~~~~ 464 (531)
|.++.|+|++ -++-|-+-..+.|||++.. ++..| ..++=+++-|+| .+++++.++.+ |.|-|||+.+.+.+
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df-~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF-PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC-CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhc
Confidence 9999999999 4556678899999999654 33333 356678899999 99999888765 78999999998777
Q ss_pred EecCCCCceEEEEEccCCCEEEEEeC------CCcEEEEeCCCCeEEE
Q 009614 465 DYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQLYQ 506 (531)
Q Consensus 465 ~~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~~~~l~~ 506 (531)
....... -+-..|+|||++++|++. |+.++||+.. |.++.
T Consensus 350 ~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 350 AKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH 395 (566)
T ss_pred cccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence 5333333 345799999999999887 6789999987 44443
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.01 E-value=2.4e-08 Score=101.21 Aligned_cols=114 Identities=16% Similarity=0.255 Sum_probs=96.6
Q ss_pred ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~ 462 (531)
..|.+.|+++.++.+- .|.+++.|+.+..|+....+.++.+. .+..+.+++.+| |+..+++++ +.|++||+.+++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~ke 175 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKE 175 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCce
Confidence 4589999999998876 99999999999999999999988886 667789999999 899999887 589999999999
Q ss_pred EE-EecCCCCceEEEEEccC-----CCEEEEE-eCCCcEEEEeCCC
Q 009614 463 VV-DYTDIREIVSAVCYCPD-----GKGGIVG-TMTGNCRFYDIKD 501 (531)
Q Consensus 463 ~~-~~~~~~~~v~~v~~spd-----g~~l~sg-s~dg~I~iwd~~~ 501 (531)
++ .+.+|.++|.++.|.-+ |.+++++ ..+.-+.+|-+..
T Consensus 176 vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 176 VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 87 69999999999999887 6666554 3344577776543
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.99 E-value=2.6e-06 Score=86.36 Aligned_cols=250 Identities=14% Similarity=0.210 Sum_probs=148.2
Q ss_pred cceeeeCCCCeEEeeec----CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEc
Q 009614 239 GSATLKPGDHELTLGQR----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKV 313 (531)
Q Consensus 239 ~s~~fspdg~~lasgs~----dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~ 313 (531)
.-++++|++++|.+... .+.|..|.+......+. ..............++++|++++|+++.. +|.|.++++
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~---~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT---LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE---EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE---EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34889999999988765 57999998875422222 22223223345667999999999998874 899999999
Q ss_pred ccCccccce-e-------------cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc--cc
Q 009614 314 IEHERLDGF-D-------------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR--LL 377 (531)
Q Consensus 314 ~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 377 (531)
.....+... . .....+.++.+.++.. .++..+... ..+.++...... +.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~v~v~dlG~--------------D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-FVYVPDLGA--------------DRVYVYDIDDDTGKLT 181 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-EEEEEETTT--------------TEEEEEEE-TTS-TEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCC-EEEEEecCC--------------CEEEEEEEeCCCceEE
Confidence 774222211 0 0111222333333222 122222221 123333222111 11
Q ss_pred CcceeEee-cCCCCeeEEEEcCCC-e-EEEEeCCCcEEEEECC--CCeE--EEEee-------cCCceEEEEEeeCCCCE
Q 009614 378 EKPLHEFQ-GHSSEVLDLSWSKNG-F-LLSSSADKTVRLWQVG--IDRC--LRVFS-------HNNYVTSVAFNPVDDNY 443 (531)
Q Consensus 378 ~~~~~~~~-~h~~~I~~l~~sp~~-~-l~s~s~Dg~V~lwdl~--~~~~--l~~~~-------h~~~V~sv~fsp~d~~~ 443 (531)
. ...+. ........+.|+|++ + .++.-.+++|.++++. .+.. +.... .......|+++| ++++
T Consensus 182 ~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~ 258 (345)
T PF10282_consen 182 P--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRF 258 (345)
T ss_dssp E--EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSE
T ss_pred E--eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCE
Confidence 1 22222 234567899999998 4 4555678889999988 4432 22222 123678999999 8988
Q ss_pred EEEEe-CCCeEEEEeCC--CCeEE--Ee-cCCCCceEEEEEccCCCEEEEEeC-CCcEEEEeC--CCCeEEEEee
Q 009614 444 FISGS-IDGKVRIWEVR--RCQVV--DY-TDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDI--KDNQLYQQNQ 509 (531)
Q Consensus 444 l~sgs-~Dg~I~Iwd~~--~~~~~--~~-~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~--~~~~l~~~~~ 509 (531)
|+++. ..+.|.+|++. ++++. .. .........++++|+|++|+++.. ++.|.+|++ .+|++....+
T Consensus 259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 77755 56789999994 34332 22 223445899999999999998874 668999866 5788765543
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.96 E-value=9.2e-09 Score=95.82 Aligned_cols=193 Identities=15% Similarity=0.177 Sum_probs=138.0
Q ss_pred ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCcc
Q 009614 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER 318 (531)
Q Consensus 240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~ 318 (531)
++.|++.+..++++..+|.+.+-+.... .+...|.+++|.-+++..+|+. +.+++.+||+|+.+..||++-.+
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~- 199 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK- 199 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-
Confidence 4678999999999999999985443321 3445567899999999999986 55689999999999999986221
Q ss_pred ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (531)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp 398 (531)
++ + .+..+-|...|.+|.-+|
T Consensus 200 --~~---------------------------------------------i------------~~n~kvH~~GV~SI~ss~ 220 (339)
T KOG0280|consen 200 --TF---------------------------------------------I------------WHNSKVHTSGVVSIYSSP 220 (339)
T ss_pred --ce---------------------------------------------e------------eecceeeecceEEEecCC
Confidence 00 0 111345888999998888
Q ss_pred CC--eEEEEeCCCcEEEEECC-CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE-----E-EecCC
Q 009614 399 NG--FLLSSSADKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-----V-DYTDI 469 (531)
Q Consensus 399 ~~--~l~s~s~Dg~V~lwdl~-~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~-----~-~~~~~ 469 (531)
.. ++++|+.|-.|++||.+ -++++..-.-.+.|+.+.++|.....++.++.-.-.+|-+...+.. . ....|
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~h 300 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIH 300 (339)
T ss_pred CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccc
Confidence 65 99999999999999999 5777777677799999999996555555556656677777765421 1 24555
Q ss_pred CCceEEEEEccCCCEEEEEe-CCCcEE-EE
Q 009614 470 REIVSAVCYCPDGKGGIVGT-MTGNCR-FY 497 (531)
Q Consensus 470 ~~~v~~v~~spdg~~l~sgs-~dg~I~-iw 497 (531)
....+.-.|......|++++ .|..++ +|
T Consensus 301 dSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 301 DSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cceeeccccccccceeeeeeccccceeeee
Confidence 56566666644445567644 344433 44
No 258
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=6.2e-09 Score=97.48 Aligned_cols=250 Identities=19% Similarity=0.263 Sum_probs=152.6
Q ss_pred eccccceeeeCCCCeEEeeecCCeEEEEeCCCCc-ccccccccceEEcccC------------CCEEEEEEccCCC--EE
Q 009614 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-RELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YL 299 (531)
Q Consensus 235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~-~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~L 299 (531)
.+.+.++.|...|.++++|.+.|+|.++.-.+.. .+.. ...++++|. ..|..+.|..++. .+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceyk---f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYK---FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchh---hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 3567788999999999999999999999766443 1111 112355554 3588899977543 56
Q ss_pred EEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCC-CceEEEeCCccccccC
Q 009614 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS-DLTCVVLPPKVFRLLE 378 (531)
Q Consensus 300 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 378 (531)
+..+.|++|++|.+........-...- .-.+.....+.+.. ......-..+. +..+..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnl----s~~~~~~~~g~~~s-------~~~l~lprls~hd~iiaa---------- 161 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNL----SDSFHSPMGGPLTS-------TKELLLPRLSEHDEIIAA---------- 161 (460)
T ss_pred EEecCCceeeeeeeecccchhhhcccc----ccccccccCCCcCC-------HHHhhcccccccceEEEe----------
Confidence 667789999999987653211110000 00000000000000 00000011111 111112
Q ss_pred cceeEe-ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCe-EEEEe---ec-----CCceEEEEEeeCCCCEEEEEe
Q 009614 379 KPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVF---SH-----NNYVTSVAFNPVDDNYFISGS 448 (531)
Q Consensus 379 ~~~~~~-~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~-~l~~~---~h-----~~~V~sv~fsp~d~~~l~sgs 448 (531)
+|.+.+ ..|...|+++.++.+...+.++.|-.|.+|++.-.. +.... .| ..-|++..|+|...+.|.-.+
T Consensus 162 ~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs 241 (460)
T COG5170 162 KPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS 241 (460)
T ss_pred ccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence 222222 568889999999998844455668889999987432 21111 13 245899999998888898889
Q ss_pred CCCeEEEEeCCCCeEE---------E--------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-EEEEee
Q 009614 449 IDGKVRIWEVRRCQVV---------D--------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ-LYQQNQ 509 (531)
Q Consensus 449 ~Dg~I~Iwd~~~~~~~---------~--------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~-l~~~~~ 509 (531)
..|.|++-|++...+- . +......|..+.|+++|+++++-.. -+|+|||++..+ ++.+++
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 9999999999843211 0 1222346888999999999988775 579999997543 444443
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.93 E-value=1.9e-07 Score=93.10 Aligned_cols=206 Identities=17% Similarity=0.270 Sum_probs=126.0
Q ss_pred CCEEEEEEccCC--CEEEE-----EeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614 285 GSILTMKFSLDG--QYLAS-----GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (531)
Q Consensus 285 ~~I~~l~fspdg--~~Las-----gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (531)
..|....|+|.| ..||. .+.+++++||.+..+..+............+.|.......++.+.... +..+.
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~-ksnKs-- 250 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT-KSNKS-- 250 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEee-ecccc--
Confidence 457777788743 33444 356778888888755544433333322223333333322222221111 11110
Q ss_pred cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEE
Q 009614 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv 434 (531)
.-+...++++... +..+.....-.++|.+++|.|.+ -+++|-++..+.++|++.. +..+.....=+.+
T Consensus 251 --yfgesnLyl~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~ 321 (561)
T COG5354 251 --YFGESNLYLLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTI 321 (561)
T ss_pred --eeccceEEEEeec-----ccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccc
Confidence 1112233333332 22233333567899999999987 4556678999999999887 4444455566788
Q ss_pred EEeeCCCCEEEEEeCC---CeEEEEeCCCCeEEE--ecCCCCceEEEEEccCCCEEEEEeC------CCcEEEEeCCCCe
Q 009614 435 AFNPVDDNYFISGSID---GKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQ 503 (531)
Q Consensus 435 ~fsp~d~~~l~sgs~D---g~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~~~~ 503 (531)
.|+| ..++++.++.| |.|-|||......+. +.+.. .+-+.|+|||+++.+... |..|.|||+....
T Consensus 322 ~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 322 FFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred cccC-cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 9999 89999998776 679999998765543 33332 344679999999887654 7789999998665
Q ss_pred EE
Q 009614 504 LY 505 (531)
Q Consensus 504 l~ 505 (531)
..
T Consensus 399 ~f 400 (561)
T COG5354 399 VF 400 (561)
T ss_pred hh
Confidence 44
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=4.7e-07 Score=103.81 Aligned_cols=227 Identities=9% Similarity=0.073 Sum_probs=140.9
Q ss_pred ccceeeeCCCCeEEee-ecCCeEEEEeCCCCcccccc--cccceEEccc-------CCCEEEEEEcc-CCCEEEEEeCCC
Q 009614 238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSS--LYTGQEFLAH-------EGSILTMKFSL-DGQYLASGGEDG 306 (531)
Q Consensus 238 ~~s~~fspdg~~lasg-s~dg~I~vwd~~~~~~~~~~--~~~~~~l~~H-------~~~I~~l~fsp-dg~~Lasgs~Dg 306 (531)
...+++++++..|.++ ...+.|++++..+.....-. ......+.+. -..-+.|+|+| ++.++++.+.++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 3458899888765554 44678998887653321000 0000000010 11236899999 566667777889
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
.|++||..++... .+ ..... .. ..++. .. ...
T Consensus 706 ~I~v~d~~~g~v~-~~------------~G~G~--~~-----------------~~~g~---------------~~-~~~ 737 (1057)
T PLN02919 706 QIWEYNISDGVTR-VF------------SGDGY--ER-----------------NLNGS---------------SG-TST 737 (1057)
T ss_pred eEEEEECCCCeEE-EE------------ecCCc--cc-----------------cCCCC---------------cc-ccc
Confidence 9999998665421 01 00000 00 00000 00 001
Q ss_pred CCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-------------e-c--------CCceEEEEEeeCCCC
Q 009614 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-------------S-H--------NNYVTSVAFNPVDDN 442 (531)
Q Consensus 387 h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~-------------~-h--------~~~V~sv~fsp~d~~ 442 (531)
.......|+++|++ ++++-+.++.|++||+.++...... . . -.....|+++| +++
T Consensus 738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~ 816 (1057)
T PLN02919 738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQ 816 (1057)
T ss_pred cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCc
Confidence 12345679999997 5556667799999999876532111 0 0 11246889999 889
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEecCCC--------------CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614 443 YFISGSIDGKVRIWEVRRCQVVDYTDIR--------------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 443 ~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~--------------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~ 508 (531)
++++-+.++.|++||..++.+....+.. .....|+++++|+++++-+.++.|++||+.+++..+..
T Consensus 817 LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~~~~ 896 (1057)
T PLN02919 817 IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEIL 896 (1057)
T ss_pred EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccceeE
Confidence 9999999999999999988776543321 25678999999998888889999999999998765444
Q ss_pred eeeec
Q 009614 509 QICLQ 513 (531)
Q Consensus 509 ~~~~~ 513 (531)
.+.+.
T Consensus 897 ~l~~~ 901 (1057)
T PLN02919 897 TLELK 901 (1057)
T ss_pred eeccc
Confidence 44433
No 261
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.91 E-value=8.1e-07 Score=83.24 Aligned_cols=249 Identities=13% Similarity=0.067 Sum_probs=126.5
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 320 (531)
++.+.+|++||+- .|..|-|...++.-... ...++.-+...-.=+.++||||+.+||.+...|+|+++|+..... .
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si--~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSI--IGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-F 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhe--eEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-E
Confidence 4567788888776 67888887665433221 112222233333456799999999999999999999999865432 2
Q ss_pred ceecCCC-------CCeeEEEeecCCcceeeeeccccccccccccccCCCceE--EEeCC-ccccccCcceeEeec-CCC
Q 009614 321 GFDVQDT-------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC--VVLPP-KVFRLLEKPLHEFQG-HSS 389 (531)
Q Consensus 321 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~-h~~ 389 (531)
.+..... .+..+.|....... ......+.....+.+ +.... ..-...+.....+.. +..
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~----------~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSA----------QWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred EcCcccccCCccccceeeeEeecccccc----------ccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 3222111 11112222211000 000001111111111 11110 000111111222333 467
Q ss_pred CeeEEEEcCCC-eEE-EEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEE-EeCCC------eEEEEeCCC
Q 009614 390 EVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS-GSIDG------KVRIWEVRR 460 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~-s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~s-gs~Dg------~I~Iwd~~~ 460 (531)
.|.++.++|.. +|+ .|+....-..+.. ....+++=..-.....+..+ ...|+ +-.+|.+-+
T Consensus 149 Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a----------~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 149 GINSAVYHPKHRLLLVGGCEQNQDGMSKA----------SSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred ceeEEEEcCCCCEEEEeccCCCCCccccc----------cccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence 99999999986 444 4444332111100 01111111111101111111 11111 123444443
Q ss_pred CeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeec
Q 009614 461 CQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ 513 (531)
Q Consensus 461 ~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~ 513 (531)
.+... .......|..|..+|||+.||+...+|.|.+|++.+-+++..++..-+
T Consensus 219 ~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 219 FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 33332 234567899999999999999999999999999999888887765533
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=7.1e-07 Score=90.21 Aligned_cols=257 Identities=16% Similarity=0.218 Sum_probs=154.4
Q ss_pred ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-----eCC-----CcEE
Q 009614 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-----GED-----GTVR 309 (531)
Q Consensus 240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-----s~D-----g~I~ 309 (531)
..+++++|+++|.+. ++.++|++.......+ .-....++++.|+|.|.+|.|- ..+ ..++
T Consensus 39 v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~l---------t~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSD-NQVVKVFEIATLKVVL---------CVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred eEEEcCCCcEEEEEc-CCeEEEEEccCCcEEE---------EeccceeeeeeecccccccccccccccccCCCCCCCcee
Confidence 468899999988874 5789999887554221 1112268999999999999873 122 3477
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCC-------cceeeeeccccc----------cccc--------------ccc
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHL-------SQLIPIDVDKEK----------IDKT--------------KSL 358 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------~~~~--------------~~~ 358 (531)
+|++.++.....+........+..|+.+.. +.+......... +... ..-
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 999998655444443333323333333321 111111111100 0000 011
Q ss_pred ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEE--EeCCC---------cEEEEECCCCeEEEEe
Q 009614 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS--SSADK---------TVRLWQVGIDRCLRVF 425 (531)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s--~s~Dg---------~V~lwdl~~~~~l~~~ 425 (531)
.++....+.+|.... ....+++..-.-....=..+.|++-| +|+. .--|+ ++++.++....+...+
T Consensus 189 ~kGaPa~vri~~~~~-~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPE-EGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCcEEEEecccc-ccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 122222333332221 00011111111112334568898877 4333 33343 6888888877777777
Q ss_pred ecCCceEEEEEeeCCCCEEEE--EeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeC---CCcEEEEeCC
Q 009614 426 SHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIK 500 (531)
Q Consensus 426 ~h~~~V~sv~fsp~d~~~l~s--gs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---dg~I~iwd~~ 500 (531)
...++|.+++|+| ++.-|++ |-.-.++.|||++..-+..+. .++-+++-|+|.|++|+.++- -|.+-|||+.
T Consensus 268 ~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 268 LKEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCCCceEEEECC-CCCEEEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 8899999999999 7766655 456779999999976655443 456678999999999998776 4789999999
Q ss_pred CCeEEEEeee
Q 009614 501 DNQLYQQNQI 510 (531)
Q Consensus 501 ~~~l~~~~~~ 510 (531)
+.+++.++..
T Consensus 345 n~K~i~~~~a 354 (566)
T KOG2315|consen 345 NRKLIAKFKA 354 (566)
T ss_pred chhhcccccc
Confidence 9888876653
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=4.4e-08 Score=95.09 Aligned_cols=79 Identities=23% Similarity=0.552 Sum_probs=69.7
Q ss_pred eecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 384 ~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
.-||-..+++++|+||+ +++++..|..||+-....-..+..| +|...|..++.-+ ++.|++|+.|++|++||+.+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence 46799999999999999 9999999999999888776666665 5999999999976 56689999999999999999
Q ss_pred CeEE
Q 009614 461 CQVV 464 (531)
Q Consensus 461 ~~~~ 464 (531)
++.+
T Consensus 225 gk~L 228 (390)
T KOG3914|consen 225 GKLL 228 (390)
T ss_pred CCcc
Confidence 8866
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=5.4e-07 Score=93.87 Aligned_cols=180 Identities=11% Similarity=0.055 Sum_probs=110.9
Q ss_pred cceeeeCCCCeEEeeec-CC----eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCCcEEEEE
Q 009614 239 GSATLKPGDHELTLGQR-MR----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWK 312 (531)
Q Consensus 239 ~s~~fspdg~~lasgs~-dg----~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd 312 (531)
...+|+|||+.||..+. +| .+.+|++..... ....+...++.+.....+|+|||+.|+..+ .+|...||.
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~----g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI----GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCC----CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 34789999998886442 23 334455543210 001112222333456789999999887765 466666664
Q ss_pred cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (531)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 392 (531)
+.-... . .....+..+...+.
T Consensus 310 ~~~~~~-------g----------------------------------------------------~~~~~lt~~~~~~~ 330 (428)
T PRK01029 310 MQIDPE-------G----------------------------------------------------QSPRLLTKKYRNSS 330 (428)
T ss_pred EECccc-------c----------------------------------------------------cceEEeccCCCCcc
Confidence 321000 0 00111222334566
Q ss_pred EEEEcCCC-eEEEEeCC---CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC---CCeEEEEeCCCCeEEE
Q 009614 393 DLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVD 465 (531)
Q Consensus 393 ~l~~sp~~-~l~s~s~D---g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~---Dg~I~Iwd~~~~~~~~ 465 (531)
...|+|+| .|+..+.+ ..|.+||+.+++..........+....|+| +++.|+..+. ...|.+||+.+++...
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 78999999 66655443 469999999887765544445678899999 8887765433 3578999999887776
Q ss_pred ecCCCCceEEEEEccCC
Q 009614 466 YTDIREIVSAVCYCPDG 482 (531)
Q Consensus 466 ~~~~~~~v~~v~~spdg 482 (531)
+......+...+|+|-.
T Consensus 410 Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 410 IVIGSGEKRFPSWGAFP 426 (428)
T ss_pred eecCCCcccCceecCCC
Confidence 66555667778888753
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=6.4e-08 Score=94.01 Aligned_cols=105 Identities=20% Similarity=0.348 Sum_probs=90.2
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEEccC
Q 009614 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPD 481 (531)
Q Consensus 404 s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spd 481 (531)
..+....+.+|....+.+...+.|-.-++.|+|+| |+++|+++..|.+|||-.....-.+. ..+|..-|..++..++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 44556677788877788888889999999999999 99999999999999998888776664 6789999999999866
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 482 g~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
. .|++|+.|+++++||+.+|+.+..+.+
T Consensus 206 ~-~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 206 Y-LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred c-eeeecCCCCcEEEEecccCCcccccch
Confidence 4 589999999999999999999876653
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=7.8e-08 Score=91.47 Aligned_cols=200 Identities=14% Similarity=0.271 Sum_probs=131.1
Q ss_pred CeEEeeecCCeEEEEeCCCCccccc--------------cc--------------ccceE-EcccCCCEEEEEEccCCCE
Q 009614 248 HELTLGQRMRRVRVHPVKKQSRELS--------------SL--------------YTGQE-FLAHEGSILTMKFSLDGQY 298 (531)
Q Consensus 248 ~~lasgs~dg~I~vwd~~~~~~~~~--------------~~--------------~~~~~-l~~H~~~I~~l~fspdg~~ 298 (531)
..++..+.|.+|++|.+........ .+ .+.+. -.+|+--|++|.++.|+..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 3456677899999998875443220 00 01111 2368889999999999998
Q ss_pred EEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (531)
Q Consensus 299 Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (531)
++++ +|=.|.+|++.-......+ ++..+
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnI----------------------VDIKP----------------------------- 206 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNI----------------------VDIKP----------------------------- 206 (433)
T ss_pred Eeec-cceeeeeccccccCCceeE----------------------EEccc-----------------------------
Confidence 8877 5678999997432211000 00000
Q ss_pred cceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEE----EEee-------------cCCceEEEEEeeC
Q 009614 379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCL----RVFS-------------HNNYVTSVAFNPV 439 (531)
Q Consensus 379 ~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l----~~~~-------------h~~~V~sv~fsp~ 439 (531)
..+..-+.-|++..|+|.. .++-++..|+|+|-|++..... +.|. --..|..+.|++
T Consensus 207 ---~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~- 282 (433)
T KOG1354|consen 207 ---ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH- 282 (433)
T ss_pred ---cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-
Confidence 0011123457788899976 8888888999999999843221 2221 124578899999
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-CeEE-EecCCC------------Cc---eEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 440 DDNYFISGSIDGKVRIWEVRR-CQVV-DYTDIR------------EI---VSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 440 d~~~l~sgs~Dg~I~Iwd~~~-~~~~-~~~~~~------------~~---v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
+|+|+++-.. -+|+|||+.. .+++ .+.-|. +. -..++|+-++.++++|+..+..++|++..|
T Consensus 283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 9999998654 5899999943 3333 222221 12 245789999999999999999999997655
Q ss_pred eE
Q 009614 503 QL 504 (531)
Q Consensus 503 ~l 504 (531)
..
T Consensus 362 sk 363 (433)
T KOG1354|consen 362 SK 363 (433)
T ss_pred cc
Confidence 43
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=2e-06 Score=79.44 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=104.2
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCC-e-EEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 009614 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGID-R-CLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~-~-~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~- 464 (531)
+.++++++++ ++++.+....|-.|.+... . .+++. ...+.-.+..|+. ....||++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccch
Confidence 7889999999 8888888889999988643 2 22322 2445567888998 8889999999999999999975432
Q ss_pred -----EecCCCCceEEEEEccCCC--EEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614 465 -----DYTDIREIVSAVCYCPDGK--GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV 529 (531)
Q Consensus 465 -----~~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~ 529 (531)
....|.+.+..+.|+|.|. +|...-.-+.+++.|+++++-.+.+.+......+.....|++-.|+
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence 2456888999999998663 4555555678999999999888877766555455555668877665
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=3.9e-06 Score=86.96 Aligned_cols=190 Identities=9% Similarity=0.081 Sum_probs=115.9
Q ss_pred cceeeeCCCCe-EEeeec---CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCC--cEEEE
Q 009614 239 GSATLKPGDHE-LTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDG--TVRVW 311 (531)
Q Consensus 239 ~s~~fspdg~~-lasgs~---dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg--~I~iW 311 (531)
....|+|||+. ++..+. ...|.++|+.++... .+....+.+....|+|||+.|+.. +.++ .|.++
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~--------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE--------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE--------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence 35789999985 554333 356888887654432 122345556678899999877643 3333 45555
Q ss_pred EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (531)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 391 (531)
++.++.. ..+..+.+..
T Consensus 263 dl~~g~~---------------------------------------------------------------~~LT~~~~~d 279 (419)
T PRK04043 263 DTNTKTL---------------------------------------------------------------TQITNYPGID 279 (419)
T ss_pred ECCCCcE---------------------------------------------------------------EEcccCCCcc
Confidence 5544321 1111112222
Q ss_pred eEEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---------CeEEEEeC
Q 009614 392 LDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---------GKVRIWEV 458 (531)
Q Consensus 392 ~~l~~sp~~-~l~s~s-~Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---------g~I~Iwd~ 458 (531)
....|+|+| .|+..+ ..+ .|.++|+.+++..+....... ...|+| ++++|+..+.. ..|.+.|+
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~ 356 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLIST 356 (419)
T ss_pred CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence 344799999 555444 333 588888888777554432222 248999 88888776643 36888899
Q ss_pred CCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC---cEEEEeCCCCe
Q 009614 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQ 503 (531)
Q Consensus 459 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~~~~ 503 (531)
.++....+.... ......|+|||+.|+..+..+ .+.+.++....
T Consensus 357 ~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 357 NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 888766555432 334588999999887766533 36677776543
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=1.9e-08 Score=100.72 Aligned_cols=174 Identities=17% Similarity=0.285 Sum_probs=127.5
Q ss_pred eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (531)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (531)
+.+.||+..|..++--.+.+-+++++.|++|++|.++...-- ..
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~~--------------------------- 772 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------IG--------------------------- 772 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------cc---------------------------
Confidence 457899999999887777888999999999999998542210 00
Q ss_pred cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEE
Q 009614 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTS 433 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~s 433 (531)
......+++.|+.+|.++.|-.+. ++++ -|+-|.+||.--++.+.... ..+.+..
T Consensus 773 -------------------tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ 831 (1034)
T KOG4190|consen 773 -------------------TSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGN 831 (1034)
T ss_pred -------------------cceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCce
Confidence 011245677899999999998876 5544 47899999987777665432 2233333
Q ss_pred EEEee-CCCCEEEEE-eCCCeEEEEeCCCCeEEE------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614 434 VAFNP-VDDNYFISG-SIDGKVRIWEVRRCQVVD------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 434 v~fsp-~d~~~l~sg-s~Dg~I~Iwd~~~~~~~~------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~ 505 (531)
|.--| ++..++++| +...+|+++|.+.+.... ..+.+..+.+++..|.|+++++|-..|.|.+.|.++|+.+
T Consensus 832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred eEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 33333 244555555 778999999999876542 2445567899999999999999999999999999999987
Q ss_pred EEe
Q 009614 506 QQN 508 (531)
Q Consensus 506 ~~~ 508 (531)
..+
T Consensus 912 Nsw 914 (1034)
T KOG4190|consen 912 NSW 914 (1034)
T ss_pred ccC
Confidence 644
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=8.5e-08 Score=98.83 Aligned_cols=171 Identities=18% Similarity=0.265 Sum_probs=129.7
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC
Q 009614 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (531)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (531)
.....|++|+....++|.||.||.+++..+.+...-........ +..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa-~sn-------------------------------- 60 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAA-ASN-------------------------------- 60 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccc-ccc--------------------------------
Confidence 35688999999999999999999999998866432111100000 000
Q ss_pred ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe---ecCCceEEEEEeeC
Q 009614 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPV 439 (531)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~---~h~~~V~sv~fsp~ 439 (531)
-..-+++.||.+.|..+.|+.+. .|-++..+|.|.+|-+-.+...... +.++.|.+++|+.
T Consensus 61 --------------LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~- 125 (1189)
T KOG2041|consen 61 --------------LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL- 125 (1189)
T ss_pred --------------cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-
Confidence 01245689999999999999988 8999999999999999887765443 2567899999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 440 d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
+|..++..-.||.|.+=.+...++..-.-.......+.|++|.+.++.+-..|.+++||.+.+
T Consensus 126 dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 126 DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGN 188 (1189)
T ss_pred CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEeccccc
Confidence 999999999999998877776665522112223457899999999999999999999998754
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.67 E-value=6.5e-06 Score=92.92 Aligned_cols=248 Identities=14% Similarity=0.189 Sum_probs=151.2
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEE----eCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVH----PVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vw----d~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 311 (531)
+.+.++.+-++...++.+..+|.|.+. +......+ ..-.-...|.+++||||+..|+.+..+++|.+.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E--------~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE--------IVGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE--------EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 556677888899999999999999999 33322222 122235789999999999999999999998887
Q ss_pred EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEE--EeCCccccccCcceeEeecCCC
Q 009614 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV--VLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
. .+...+.+......... ....+.++++.+... +.|+...... .-++.... .....+. +..
T Consensus 148 t-~~fd~i~E~~l~~~~~~--------~~~~VsVGWGkKeTQ----F~Gs~gK~aa~~~~~p~~~~---~d~~~~s-~dd 210 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFG--------ESKHVSVGWGKKETQ----FHGSAGKAAARQLRDPTVPK---VDEGKLS-WDD 210 (928)
T ss_pred e-ccceEEEEeecCccccC--------CCceeeeccCcccCc----cCcchhhhhhhhccCCCCCc---cccCccc-cCC
Confidence 4 34444433332222111 112222222222111 1111111100 00000000 0011122 444
Q ss_pred CeeEEEEcCCC-eEEEEeC---C---CcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeC---CCeEEEEeC
Q 009614 390 EVLDLSWSKNG-FLLSSSA---D---KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV 458 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s~---D---g~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~---Dg~I~Iwd~ 458 (531)
.-..|+|..|| ++++.+. . ..+|||+-+ |....+-. -.+--.+++|-| .|++||+.-. ...|.+|..
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 66789999999 8877764 2 579999875 55443333 233346789999 9999998764 345777765
Q ss_pred CCCeEEE----ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 459 RRCQVVD----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 459 ~~~~~~~----~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
..-+--. +......|..+.|++|+..|++...|. |.+|-..+.+...+..+.
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~ 344 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR 344 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE
Confidence 5433222 224556899999999999999977655 999999998866555443
No 272
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=9.2e-08 Score=91.06 Aligned_cols=125 Identities=12% Similarity=0.252 Sum_probs=100.8
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-----eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~-----~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
..+.|.++.|...+ ++..|+..|.|..+|++++ .+...+-|...|++++.-..++++|++.+.+|+|++||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 45678888888766 9999999999999999864 57778889999999987665788999999999999999997
Q ss_pred CeE---E-EecCCCCceEEE--EEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 461 CQV---V-DYTDIREIVSAV--CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 461 ~~~---~-~~~~~~~~v~~v--~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
-+. + .+.+|-..-.-+ -..+....+++++.|-..|||.+..++++.+++..
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 654 3 567775543333 33455667888999999999999999999887754
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.65 E-value=5.9e-07 Score=85.66 Aligned_cols=76 Identities=18% Similarity=0.377 Sum_probs=68.6
Q ss_pred cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe--EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
|.+.+++++|.| ....+.+|..|..|.+||+-..+ .....+|...|..+++.+--+.+++++.||.|.+|+++..+
T Consensus 196 h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 196 HTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred cccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 889999999999 88999999999999999997654 45688999999999999999999999999999999997544
No 274
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.9e-07 Score=88.94 Aligned_cols=246 Identities=17% Similarity=0.149 Sum_probs=166.4
Q ss_pred eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcccCccccc
Q 009614 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDG 321 (531)
Q Consensus 243 fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~~ 321 (531)
+..-.+++.+++.||.++.|.-.... .......+..|-+.|.+++.+-+|.++.|.+. |..++++|+.+-..+..
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~is----GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm 91 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSRIS----GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM 91 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCCcc----ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence 33455788999999999999765311 11222346789999999999999999999888 99999999987765544
Q ss_pred eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-
Q 009614 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400 (531)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~- 400 (531)
++.... +..+.|.......+..+ .+..-.++.+.+++...-. .+....-.-|..+|.++.+++.+
T Consensus 92 iKL~~l-Pg~a~wv~skGd~~s~I-----------AVs~~~sg~i~VvD~~~d~--~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 92 IKLVDL-PGFAEWVTSKGDKISLI-----------AVSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred cccccC-CCceEEecCCCCeeeeE-----------EeecccCCCcEEECCcCCc--CccceecccccCceEEEEeecccc
Confidence 433222 22222222222111111 1222334445555543321 11223334599999999999998
Q ss_pred eEEEEeCCCcEEEEECCC------CeEEEEe----------ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614 401 FLLSSSADKTVRLWQVGI------DRCLRVF----------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~------~~~l~~~----------~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~ 464 (531)
.+++....|.|..|.... ......+ ..+...+++.|+| ++..+.+-+.|.+|++++..+++++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence 888888899999998863 1111111 1456789999999 9999999999999999999988744
Q ss_pred Eec---------------------------------CCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614 465 DYT---------------------------------DIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 465 ~~~---------------------------------~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~ 508 (531)
... .|. ..-+.++|...|++|+-|+.=| |++.++.++.....+
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 210 011 1246678889999999998776 899999998876543
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.6e-06 Score=86.01 Aligned_cols=112 Identities=13% Similarity=0.345 Sum_probs=76.6
Q ss_pred CCCeeEEEEcCCC-eEEEEe---CCCcEEEEECCCC-e---EEEEeecCCceEEEEEeeCCCCEEEEEe---CCCeEEEE
Q 009614 388 SSEVLDLSWSKNG-FLLSSS---ADKTVRLWQVGID-R---CLRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIW 456 (531)
Q Consensus 388 ~~~I~~l~~sp~~-~l~s~s---~Dg~V~lwdl~~~-~---~l~~~~h~~~V~sv~fsp~d~~~l~sgs---~Dg~I~Iw 456 (531)
...|...+|-|.| .+++-+ ...++.+|.+.+. . .+..+ .....+.|.|+| .|++++.+. ..|.+..+
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DKKFANTVFWSP-KGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-cccccceEEEcC-CCcEEEEEEecccccceEEE
Confidence 3567888999999 444333 2467899988742 1 22233 235678899999 899888754 46889999
Q ss_pred eCCCC--eEEEecCCCCceEEEEEccCCCEEEEEeCCC------cEEEEeCCCC
Q 009614 457 EVRRC--QVVDYTDIREIVSAVCYCPDGKGGIVGTMTG------NCRFYDIKDN 502 (531)
Q Consensus 457 d~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg------~I~iwd~~~~ 502 (531)
|+... +.+....| ...+.+.|.|.|+|+++++.-+ --+||+.+..
T Consensus 523 D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 523 DTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred ecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 99853 33333333 3567899999999999988743 3577777643
No 276
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.58 E-value=1.1e-05 Score=80.95 Aligned_cols=235 Identities=15% Similarity=0.170 Sum_probs=150.3
Q ss_pred cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC----------
Q 009614 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---------- 306 (531)
Q Consensus 237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---------- 306 (531)
.+..++++|.|.+|++.... .|.+|......+. . .+. | ..|..+.|+|.++||.+-+.-+
T Consensus 34 p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l-~------~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKL-V------RFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred chhheeecCcchheehhhcc-ceEEccccchhhe-e------eee-c-CCceecccCcccceeeeeccCCccChhhccCC
Confidence 34457999999999988664 4889987644321 1 121 3 4689999999999999976543
Q ss_pred -----cEEEEEcccCccccceecCCCC--Ce-eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614 307 -----TVRVWKVIEHERLDGFDVQDTD--PS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (531)
Q Consensus 307 -----~I~iWd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (531)
.+.+||+.++..+..+...... .. .+.|+.+..-. ... ....++++.. .-++..
T Consensus 104 ~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~----------------ARv-v~~sl~i~e~-t~n~~~ 165 (561)
T COG5354 104 FTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYV----------------ARV-VGSSLYIHEI-TDNIEE 165 (561)
T ss_pred ccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhh----------------hhh-ccCeEEEEec-CCcccc
Confidence 4899999999988777655443 22 22232222110 000 1112333332 222223
Q ss_pred cceeEeecCCCCeeEEEEcCCC---eEEE-----EeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEe-
Q 009614 379 KPLHEFQGHSSEVLDLSWSKNG---FLLS-----SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS- 448 (531)
Q Consensus 379 ~~~~~~~~h~~~I~~l~~sp~~---~l~s-----~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs- 448 (531)
.+.+.+. ...|....|+|.+ .|+. .+.++++++|.+..+..+.+-. ....-..+.|++ .+++++.--
T Consensus 166 ~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~ 242 (561)
T COG5354 166 HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVM 242 (561)
T ss_pred Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEE
Confidence 3333333 4678899999974 4443 4678899999999777766543 222234577888 677665421
Q ss_pred ----------CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEE--eCCCcEEEEeCCCC
Q 009614 449 ----------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG--TMTGNCRFYDIKDN 502 (531)
Q Consensus 449 ----------~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg--s~dg~I~iwd~~~~ 502 (531)
....++|+++....+-...+..++|...+|.|+++.+++. -..-.+.++|++.+
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 1246888888855544333778999999999988776654 46788999999876
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.58 E-value=2.7e-05 Score=89.54 Aligned_cols=221 Identities=10% Similarity=0.083 Sum_probs=132.0
Q ss_pred cceeeeCC-CCeEEeeecCCeEEEEeCCCCcccccccccceEE------cccCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 009614 239 GSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF------LAHEGSILTMKFSLDGQYLASGG-EDGTVRV 310 (531)
Q Consensus 239 ~s~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l------~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~i 310 (531)
..+++++. +.++++-+..++|++++...............-+ .++-.....|+++++++.|+.+. .++.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 34788875 6677777888999999976432110000000000 01122357899999888766654 4567888
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
+|+.++. +..+...... ... ..++..+. ... -..
T Consensus 651 id~~~~~-V~tlag~G~~---------------g~~-----------~~gg~~~~---------------~~~----ln~ 684 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTK---------------GSD-----------YQGGKKGT---------------SQV----LNS 684 (1057)
T ss_pred EecCCCE-EEEEeccCcc---------------cCC-----------CCCChhhh---------------Hhh----cCC
Confidence 8876543 1111110000 000 00000000 000 112
Q ss_pred eeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEee---------------cCCceEEEEEeeCCCC-EEEEEeCCCe
Q 009614 391 VLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------HNNYVTSVAFNPVDDN-YFISGSIDGK 452 (531)
Q Consensus 391 I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---------------h~~~V~sv~fsp~d~~-~l~sgs~Dg~ 452 (531)
...++++| ++ ++++.+.++.|++||..++....... .-...+.|+++| +++ ++++.+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCe
Confidence 35789999 45 66777788999999998775432111 012456799999 776 6666677899
Q ss_pred EEEEeCCCCeEEEecC----------------------CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614 453 VRIWEVRRCQVVDYTD----------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (531)
Q Consensus 453 I~Iwd~~~~~~~~~~~----------------------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~ 506 (531)
|++||+.++......+ .-.....++++++|.++++-..+++|++||..++.+..
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT 839 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 9999998765321110 01134689999999988888899999999999887654
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.58 E-value=1.1e-05 Score=80.03 Aligned_cols=171 Identities=11% Similarity=0.167 Sum_probs=131.6
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcccCccccceec
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIEHERLDGFDV 324 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-~I~iWd~~~~~~~~~~~~ 324 (531)
+|.+++.-+. |+..|.+...... .-.+|.+.|.-..+..++.-++.|..|| .+-|+|..+++
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~---------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------- 393 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYS---------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------- 393 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCee---------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-------
Confidence 5667776655 5555554432211 1236788898888888888899999998 89999987765
Q ss_pred CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE
Q 009614 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (531)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~ 403 (531)
+..+...-+.|..+..+++| +++
T Consensus 394 --------------------------------------------------------~kr~e~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 394 --------------------------------------------------------VKRIEKDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred --------------------------------------------------------EEEeeCCccceEEEEEcCCCcEEE
Confidence 23344566789999999999 788
Q ss_pred EEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCC----eEEEEeCCCCeEEEecCCCCceEEEEE
Q 009614 404 SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDIREIVSAVCY 478 (531)
Q Consensus 404 s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg----~I~Iwd~~~~~~~~~~~~~~~v~~v~~ 478 (531)
.+.....|.+.|+.++.....-. ..+-|+.+.||| ++++||-+--+| .|+++|+.++++.........-.+-+|
T Consensus 418 vaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF 496 (668)
T COG4946 418 VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF 496 (668)
T ss_pred EEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc
Confidence 88888889999999988654433 557799999999 999999876655 699999999999987776666677899
Q ss_pred ccCCCEEEEEeC
Q 009614 479 CPDGKGGIVGTM 490 (531)
Q Consensus 479 spdg~~l~sgs~ 490 (531)
.|||++|.--+.
T Consensus 497 D~d~ryLYfLs~ 508 (668)
T COG4946 497 DPDGRYLYFLSA 508 (668)
T ss_pred CCCCcEEEEEec
Confidence 999998876543
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.57 E-value=1.4e-05 Score=90.24 Aligned_cols=252 Identities=17% Similarity=0.221 Sum_probs=151.3
Q ss_pred eeccccceeeeCCCCeEEeeecCCeEEEEeCCC-------------Cc-ccc-------cccccc---------------
Q 009614 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-------------QS-REL-------SSLYTG--------------- 277 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~-------------~~-~~~-------~~~~~~--------------- 277 (531)
....+.+++||||+.++|..+.+++|.+-...= +. +.+ .+.+.+
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 445777899999999999999999888753210 00 000 000000
Q ss_pred -----eEEcccCCCEEEEEEccCCCEEEEEeC---C---CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeee
Q 009614 278 -----QEFLAHEGSILTMKFSLDGQYLASGGE---D---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346 (531)
Q Consensus 278 -----~~l~~H~~~I~~l~fspdg~~Lasgs~---D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (531)
..+. +...-..|+|-.||.|+|+.+- . ..|+||+-. |.....-....+-..++.|.|.+ .+++..
T Consensus 199 ~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG--~lIA~~ 274 (928)
T PF04762_consen 199 PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG--NLIASS 274 (928)
T ss_pred CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC--CEEEEE
Confidence 0111 3345567899999999999874 3 579999864 54333322222223344444443 222221
Q ss_pred ccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE--E
Q 009614 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--R 423 (531)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l--~ 423 (531)
.. ......+++|.....+..+ ....+......|..|.|++++ .|+....|. |.+|-..+.... +
T Consensus 275 q~-----------~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 275 QR-----------LPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ 341 (928)
T ss_pred EE-----------cCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence 11 1222345555444332211 111122345678999999999 776666554 999998876532 2
Q ss_pred Ee--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC----CC---------e-------EEE----------------
Q 009614 424 VF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RC---------Q-------VVD---------------- 465 (531)
Q Consensus 424 ~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~----~~---------~-------~~~---------------- 465 (531)
.+ .....+..+.|+|.+...|...+.+|.+.+++.. .+ . .+.
T Consensus 342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~ 421 (928)
T PF04762_consen 342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY 421 (928)
T ss_pred EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence 22 2344566699999878888888887777665532 11 1 111
Q ss_pred ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
.......|.+++|++++..+++-..||.|.+|.....
T Consensus 422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 1223567999999999988999999999999986543
No 280
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.56 E-value=7.8e-05 Score=75.63 Aligned_cols=231 Identities=14% Similarity=0.188 Sum_probs=127.2
Q ss_pred CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC----CCcEEEEEcccC-cccc---ceecCCCC
Q 009614 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----DGTVRVWKVIEH-ERLD---GFDVQDTD 328 (531)
Q Consensus 257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----Dg~I~iWd~~~~-~~~~---~~~~~~~~ 328 (531)
+.|.+|+++.....+.. .+.+. -......|+++|++++|+++.. +|.|..|.+... ..+. ........
T Consensus 13 ~gI~~~~~d~~~g~l~~---~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTL---VQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS 88 (345)
T ss_dssp TEEEEEEEETTTTEEEE---EEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred CcEEEEEEcCCCCCceE---eeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence 78999988544433332 12221 2345667899999999999876 578999998764 2222 22211122
Q ss_pred CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe----------ecCCCCeeEEEEcC
Q 009614 329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF----------QGHSSEVLDLSWSK 398 (531)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~~I~~l~~sp 398 (531)
+..+.+.++. ..++..... .+.+.+++...-.........+ ........++.++|
T Consensus 89 p~~i~~~~~g-~~l~vany~--------------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 89 PCHIAVDPDG-RFLYVANYG--------------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp EEEEEECTTS-SEEEEEETT--------------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred cEEEEEecCC-CEEEEEEcc--------------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence 2222222222 222222222 2223222222100000111111 01234578899999
Q ss_pred CC-eEEEE-eCCCcEEEEECCCCe--EEE--Ee--ecCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeCC--CCeEE--E
Q 009614 399 NG-FLLSS-SADKTVRLWQVGIDR--CLR--VF--SHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVR--RCQVV--D 465 (531)
Q Consensus 399 ~~-~l~s~-s~Dg~V~lwdl~~~~--~l~--~~--~h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~~--~~~~~--~ 465 (531)
++ ++++. -....|.+|++.... ... .+ ........+.|+| +++++++. -.++.|.++++. ++... .
T Consensus 154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 98 55544 345679999997654 322 22 3556678999999 88776554 567889999998 44332 1
Q ss_pred ---ec--CC--CCceEEEEEccCCCEEEEEe-CCCcEEEEeC--CCCeEEEE
Q 009614 466 ---YT--DI--REIVSAVCYCPDGKGGIVGT-MTGNCRFYDI--KDNQLYQQ 507 (531)
Q Consensus 466 ---~~--~~--~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~--~~~~l~~~ 507 (531)
.. +. ......|+++|||++|+++. ..+.|.+|++ .++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEE
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEE
Confidence 11 11 12578999999999987766 4677999999 34555443
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.56 E-value=4.4e-07 Score=94.10 Aligned_cols=234 Identities=17% Similarity=0.196 Sum_probs=152.3
Q ss_pred CCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcccCcccc-ce
Q 009614 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLD-GF 322 (531)
Q Consensus 245 pdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~-~~ 322 (531)
|--.+-++......-.||++......... -.+.||..+|+.+.|+|+. ..|++++.|-.|+.||+.+..... ..
T Consensus 79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIe----f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~ 154 (1081)
T KOG0309|consen 79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIE----FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST 154 (1081)
T ss_pred CCCceeEEecCcchhhhhhhhcCCccceE----EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee
Confidence 34445556666677778988754433222 2477999999999999954 589999999999999997755321 11
Q ss_pred ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--
Q 009614 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-- 400 (531)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-- 400 (531)
..-......+.|..... ..+..+....+.+|+.+.. ..|++.+++|...|+.+.|..--
T Consensus 155 ~~w~s~asqVkwnyk~p----------------~vlasshg~~i~vwd~r~g---s~pl~s~K~~vs~vn~~~fnr~~~s 215 (1081)
T KOG0309|consen 155 SSWRSAASQVKWNYKDP----------------NVLASSHGNDIFVWDLRKG---STPLCSLKGHVSSVNSIDFNRFKYS 215 (1081)
T ss_pred ecccccCceeeecccCc----------------chhhhccCCceEEEeccCC---CcceEEecccceeeehHHHhhhhhh
Confidence 11111111222211111 1123344455677776543 46789999999999999998754
Q ss_pred eEEEEeCCCcEEEEECCCC--eEEEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCC---------C-e-EEEe
Q 009614 401 FLLSSSADKTVRLWQVGID--RCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR---------C-Q-VVDY 466 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~--~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~---------~-~-~~~~ 466 (531)
.+.++++|++|+.||.... ...++...+.+|+.-++-|....+.+--. .+..|.+++.++ + + +..+
T Consensus 216 ~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 216 EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred hhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 8999999999999998753 34455557778888888884333333221 222444444332 2 2 3358
Q ss_pred cCCCCceEEEEEccCC----------CEEEEEeCCCcEEEEeCCC
Q 009614 467 TDIREIVSAVCYCPDG----------KGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 467 ~~~~~~v~~v~~spdg----------~~l~sgs~dg~I~iwd~~~ 501 (531)
.+|.+.|...-|...+ -.|++=+.|.++++|-+.+
T Consensus 296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 8898888776665422 2689999999999998864
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.55 E-value=7.6e-05 Score=71.83 Aligned_cols=207 Identities=15% Similarity=0.130 Sum_probs=134.8
Q ss_pred eeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEc-cCCCEEEEEeCCCcEEEEEcccCcc
Q 009614 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS-LDGQYLASGGEDGTVRVWKVIEHER 318 (531)
Q Consensus 241 ~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs-pdg~~Lasgs~Dg~I~iWd~~~~~~ 318 (531)
..|.+ ++.++++-...+.|..|+........ +. ......+++. +++ .|+.+...+ +.++|+.+++.
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------~~--~~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~ 72 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------ID--LPGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKV 72 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------EE--SSSEEEEEEECTTS-EEEEEETTC-EEEEETTTTEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------Ee--cCCCceEEEEccCC-EEEEEEcCc-eEEEecCCCcE
Confidence 57887 77777777778999999987654332 11 1227778888 565 455555544 55558776642
Q ss_pred ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ec-CCCCeeEEEE
Q 009614 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QG-HSSEVLDLSW 396 (531)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~I~~l~~ 396 (531)
..... .. .. .....+++++
T Consensus 73 ~~~~~-----------------------------------------------------------~~~~~~~~~~~ND~~v 93 (246)
T PF08450_consen 73 TVLAD-----------------------------------------------------------LPDGGVPFNRPNDVAV 93 (246)
T ss_dssp EEEEE-----------------------------------------------------------EETTCSCTEEEEEEEE
T ss_pred EEEee-----------------------------------------------------------ccCCCcccCCCceEEE
Confidence 11110 00 11 2345789999
Q ss_pred cCCC-eEEEEeCC--------CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE-EEeCCCeEEEEeCCC--CeEE
Q 009614 397 SKNG-FLLSSSAD--------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRR--CQVV 464 (531)
Q Consensus 397 sp~~-~l~s~s~D--------g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~-sgs~Dg~I~Iwd~~~--~~~~ 464 (531)
.|+| +.++.... +.|..++.. ++.......-...+.|+|+| +++.|+ +-+..+.|..+++.. .++.
T Consensus 94 d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~ 171 (246)
T PF08450_consen 94 DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELS 171 (246)
T ss_dssp -TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEE
T ss_pred cCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC-cchheeecccccceeEEEecccccccee
Confidence 9999 44444433 457777777 66555555566789999999 887654 667788999999863 2121
Q ss_pred ------EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614 465 ------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV 529 (531)
Q Consensus 465 ------~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~ 529 (531)
.........-.+++..+|++.++....+.|.+++.. |+++..+.+. ...+|+++|.
T Consensus 172 ~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--------~~~~t~~~fg 233 (246)
T PF08450_consen 172 NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--------VPRPTNCAFG 233 (246)
T ss_dssp EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--------SSSEEEEEEE
T ss_pred eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--------CCCEEEEEEE
Confidence 122223347889999999988888889999999988 8888766543 2467888884
No 283
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=2.8e-08 Score=104.54 Aligned_cols=198 Identities=18% Similarity=0.293 Sum_probs=138.0
Q ss_pred ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC--
Q 009614 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-- 306 (531)
Q Consensus 229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-- 306 (531)
+++.-+.....|++|+-+.++|+.|+..|.|+++++..+..+-+ ..+|..+|+-+.=+.||..+++.+.-.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------VNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------ccccccccccccccCCcceeeeeccccCc
Confidence 34444555667899999999999999999999999997776543 678999999999999999777765432
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
-..+|++.+-. .+.+.|.
T Consensus 1168 lsaLW~~~s~~-------------------------------------------------------------~~~Hsf~- 1185 (1516)
T KOG1832|consen 1168 LSALWDASSTG-------------------------------------------------------------GPRHSFD- 1185 (1516)
T ss_pred hHHHhcccccc-------------------------------------------------------------Ccccccc-
Confidence 46678764311 1122222
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-e----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
.-.++.|+... .-+.|+....+.+||++++.++.++ . .+..-++..|+| +..+++ .|| .+||++.
T Consensus 1186 ---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1186 ---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred ---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEe---eCc--eeeeecc
Confidence 22356666654 3344444467899999999887774 2 223347889999 777665 355 4899998
Q ss_pred CeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 461 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
.+.++..+.-..-..-.|+|.|..++.-+. |||+++-++++..+
T Consensus 1257 ~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1257 PEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred HHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 876643322223334569999999998875 99999988876544
No 284
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.54 E-value=4.7e-05 Score=73.66 Aligned_cols=246 Identities=17% Similarity=0.231 Sum_probs=149.5
Q ss_pred cceeeeC-CCCeEEeeecCCe-EEEEeCCCCcccc-cccccceEEcccCCCEEEEEEccCCCEEEEEe-----CCCcEEE
Q 009614 239 GSATLKP-GDHELTLGQRMRR-VRVHPVKKQSREL-SSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-----EDGTVRV 310 (531)
Q Consensus 239 ~s~~fsp-dg~~lasgs~dg~-I~vwd~~~~~~~~-~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-----~Dg~I~i 310 (531)
..++.+| ....++.+-..|+ ..+||...+.... ......+.|.||. .|++||++|++.= ..|.|-|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEE
Confidence 3578888 4555666777665 6778887655431 1223344567774 8999999999863 3589999
Q ss_pred EEcc-cCccccceecCCCCCeeEEEeecCCcceeeeeccccc--cccccccccCCCceEEEeCCccccccCcceeEe--e
Q 009614 311 WKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK--IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--Q 385 (531)
Q Consensus 311 Wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 385 (531)
||.. +.+.+.++..+.-.+.-+.+.++....+++..--... ....+.-..+-+..+...+.....+.++ ..+ .
T Consensus 82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q--~~Lp~~ 159 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ--VELPPD 159 (305)
T ss_pred EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee--eecCcc
Confidence 9998 6677778887777777777777765555543311111 0111111222233344443333333222 123 4
Q ss_pred cCCCCeeEEEEcCCCeEEEEeC-CC-------cEEEEECCCCeEEEEee--------cCCceEEEEEeeCCCCEEEE-Ee
Q 009614 386 GHSSEVLDLSWSKNGFLLSSSA-DK-------TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFIS-GS 448 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~~l~s~s~-Dg-------~V~lwdl~~~~~l~~~~--------h~~~V~sv~fsp~d~~~l~s-gs 448 (531)
.|.-.|..|++.++|.++.+.. .+ .|-+++. ++.+..+. ..+++-+|++++ ++.++++ +=
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsP 236 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSP 236 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC-CCCEEEEECC
Confidence 4778899999999995555542 22 1334433 33333332 568999999999 7776655 44
Q ss_pred CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 449 ~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 498 (531)
.-+.+.+||..+++++......+ +..++-.+++ ++++.+ .|.+...+
T Consensus 237 rGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~-f~~ssG-~G~~~~~~ 283 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG-FLVSSG-QGQLIRLS 283 (305)
T ss_pred CCCEEEEEECCCCCEeeccccCc-eeeeeecCCc-eEEeCC-CccEEEcc
Confidence 67899999999999986554443 4556666666 444444 45544333
No 285
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=2.4e-07 Score=61.32 Aligned_cols=36 Identities=47% Similarity=0.860 Sum_probs=34.0
Q ss_pred ceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (531)
Q Consensus 277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 312 (531)
.+++.+|.+.|++|+|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 457899999999999999999999999999999997
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.48 E-value=3.5e-05 Score=76.68 Aligned_cols=121 Identities=11% Similarity=0.151 Sum_probs=101.1
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCC-cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg-~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~ 463 (531)
+|.+.|.-..+..++ -++.|..|| .+-|+|.++++..+....-+.|.++..+| ++++++++.....|.+.|+.++.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe
Confidence 455667666666666 788888898 89999999998877777788999999999 999999999999999999999987
Q ss_pred EEecC-CCCceEEEEEccCCCEEEEEeCCC----cEEEEeCCCCeEEEE
Q 009614 464 VDYTD-IREIVSAVCYCPDGKGGIVGTMTG----NCRFYDIKDNQLYQQ 507 (531)
Q Consensus 464 ~~~~~-~~~~v~~v~~spdg~~l~sgs~dg----~I~iwd~~~~~l~~~ 507 (531)
..... ..+.|+.+.|||+++++|-+--+| .|++||+.+++....
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 65433 346799999999999999987766 589999999887653
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.45 E-value=2.6e-06 Score=78.44 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=79.3
Q ss_pred CeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 009614 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (531)
Q Consensus 390 ~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~- 464 (531)
.|.+++-+|.. .+++|+.||.+-+||.+.......+ .|+..++-|-|+|.++..|.+++.||.+..||..+.-+-
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i 260 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSI 260 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEe
Confidence 48899999976 8889999999999999987444333 399999999999999999999999999999998852211
Q ss_pred E--ecCC-----CCceEE--------------E-EEccCCCEEEEEeCCCcEEEEe
Q 009614 465 D--YTDI-----REIVSA--------------V-CYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 465 ~--~~~~-----~~~v~~--------------v-~~spdg~~l~sgs~dg~I~iwd 498 (531)
. ...+ .+++.+ | .|.--|..|++|+.-+.|++++
T Consensus 261 ~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 261 SNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 0 0000 011111 1 2333567788888888888775
No 288
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.44 E-value=6.5e-07 Score=100.96 Aligned_cols=165 Identities=20% Similarity=0.314 Sum_probs=127.9
Q ss_pred EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccc
Q 009614 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (531)
Q Consensus 280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (531)
++.|-..|.+|.=+|...+.+||+.||.|++|....++.+..+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt----------------------------------- 2248 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT----------------------------------- 2248 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-----------------------------------
Confidence 444567788898899999999999999999999866653322110
Q ss_pred cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEe
Q 009614 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437 (531)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fs 437 (531)
.| +..|+.+.|+.+| .+..+-.||.+.+|.+.. ++.... .|+...+...|-
T Consensus 2249 -------------------------~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2249 -------------------------AG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred -------------------------cC-cchhhhhhhcccCCceeeeccCCceeecccCC-cceeccccCCccccceeee
Confidence 11 2567888888888 888899999999999873 333333 388888888885
Q ss_pred eCCCCEEEEEe---CCCeEEEEeCCCC---eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 438 PVDDNYFISGS---IDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 438 p~d~~~l~sgs---~Dg~I~Iwd~~~~---~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
- ..+++++ .++.+.+||..-. .++. ..|.+.+++++|.|..++|++|+.+|.|++||++..++++.++.
T Consensus 2302 ~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2302 G---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred e---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence 3 5666654 5689999997542 2334 78999999999999999999999999999999999888877764
No 289
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=0.00072 Score=65.67 Aligned_cols=247 Identities=13% Similarity=0.193 Sum_probs=145.5
Q ss_pred ceeeeCCCCeEEeeec---CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccc
Q 009614 240 SATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIE 315 (531)
Q Consensus 240 s~~fspdg~~lasgs~---dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~ 315 (531)
=++|+|++++|.++-. .|.|..|.+....-.+..+. .+.+.++ +-+.++++++|++|+++.. -|.|.++-++.
T Consensus 44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln-~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN-RQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee-ccccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence 3789999988877654 57888888875433232211 1223332 2378999999999999875 58899999866
Q ss_pred Cccccce-e--cCCCC----------CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614 316 HERLDGF-D--VQDTD----------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (531)
Q Consensus 316 ~~~~~~~-~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (531)
...+... . .+... +....+.+.. ..++..+.... .+.+|+.....+......
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~D--------------ri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTD--------------RIFLYDLDDGKLTPADPA 185 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCc--------------eEEEEEcccCcccccccc
Confidence 3322211 1 11111 1111222221 12222222221 233333332222111112
Q ss_pred EeecCCCCeeEEEEcCCC-eE-EEEeCCCcEEEEECCCC-e---EEEEe-------ecCCceEEEEEeeCCCCEEEEEeC
Q 009614 383 EFQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGID-R---CLRVF-------SHNNYVTSVAFNPVDDNYFISGSI 449 (531)
Q Consensus 383 ~~~~h~~~I~~l~~sp~~-~l-~s~s~Dg~V~lwdl~~~-~---~l~~~-------~h~~~V~sv~fsp~d~~~l~sgs~ 449 (531)
.+ .....-..|.|+|++ +. +.+--+++|.+|..... . .++.+ ........|..+| ++++|+++..
T Consensus 186 ~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNR 263 (346)
T COG2706 186 EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNR 263 (346)
T ss_pred cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecC
Confidence 22 345567899999999 33 34556899999998763 2 22222 1456678899999 9999988753
Q ss_pred -CCeEEEEeCCC--CeEE--E-ecCCCCceEEEEEccCCCEEEEEeCCC-cEEEEeC--CCCeEEE
Q 009614 450 -DGKVRIWEVRR--CQVV--D-YTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDI--KDNQLYQ 506 (531)
Q Consensus 450 -Dg~I~Iwd~~~--~~~~--~-~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~--~~~~l~~ 506 (531)
...|.+|.+.. +++. . ...+........++|+|++|+++..++ +|.+|.. .+|++-.
T Consensus 264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 34788887754 3322 2 333344478899999999999988754 5888865 4566543
No 290
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=4.4e-06 Score=88.91 Aligned_cols=181 Identities=17% Similarity=0.259 Sum_probs=135.5
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (531)
++..++.|+-...+..+|+.+.... +...-..+.|.-|.. ++++|.+|...|+|.+-|..+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~-------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-------- 208 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET-------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-------- 208 (1118)
T ss_pred CCcceeecchhhheeeeecccceee-------eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc--------
Confidence 5566777777778888888754432 112222334666655 57899999999999998876543
Q ss_pred CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEE
Q 009614 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS 405 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~ 405 (531)
.++++..|++.|.++..+.+ +|++|
T Consensus 209 ------------------------------------------------------~iht~~aHs~siSDfDv~GN-lLitC 233 (1118)
T KOG1275|consen 209 ------------------------------------------------------TIHTFDAHSGSISDFDVQGN-LLITC 233 (1118)
T ss_pred ------------------------------------------------------eeeeeeccccceeeeeccCC-eEEEe
Confidence 36778889999998887543 77777
Q ss_pred eC---------CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe---CCCCe--EEEecCCCC
Q 009614 406 SA---------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE---VRRCQ--VVDYTDIRE 471 (531)
Q Consensus 406 s~---------Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd---~~~~~--~~~~~~~~~ 471 (531)
+. |.-|+|||++..+.+..+.......-+.|+|.-...+++++..|...+-| +.+.. +........
T Consensus 234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s 313 (1118)
T KOG1275|consen 234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS 313 (1118)
T ss_pred ecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence 64 56699999999888777764444477889997778899999999999999 44332 223444455
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614 472 IVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 472 ~v~~v~~spdg~~l~sgs~dg~I~iwd 498 (531)
.+.+++++++|+.++.|..+|.|.+|.
T Consensus 314 ~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 314 GISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEecCCCceEEEecccCcEeeec
Confidence 699999999999999999999999997
No 291
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=0.00021 Score=69.35 Aligned_cols=182 Identities=15% Similarity=0.249 Sum_probs=126.2
Q ss_pred CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEccc--CccccceecCCCCCe
Q 009614 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIE--HERLDGFDVQDTDPS 330 (531)
Q Consensus 256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~--~~~~~~~~~~~~~~~ 330 (531)
++-|++|++.+....++... +..+.+.++-|+|+|+++.|.++..+ |.|..|.+.. |... .+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~----~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~l-------- 81 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ----LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FL-------- 81 (346)
T ss_pred CCceEEEEEeCcccccchhh----hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-Ee--------
Confidence 57799999986665554332 34577889999999999999998655 5555555432 1110 00
Q ss_pred eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEe-CC
Q 009614 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-AD 408 (531)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s-~D 408 (531)
+ ..... ..+.+.+++++++ +++++. .-
T Consensus 82 ---------------------------------------n----------~~~~~--g~~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 82 ---------------------------------------N----------RQTLP--GSPPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred ---------------------------------------e----------ccccC--CCCCeEEEECCCCCEEEEEEccC
Confidence 0 00111 1223788899999 655554 56
Q ss_pred CcEEEEECCC-CeE---EEEeecCCc----------eEEEEEeeCCCCEEEEEeC-CCeEEEEeCCCCeEEE----ecCC
Q 009614 409 KTVRLWQVGI-DRC---LRVFSHNNY----------VTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVD----YTDI 469 (531)
Q Consensus 409 g~V~lwdl~~-~~~---l~~~~h~~~----------V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd~~~~~~~~----~~~~ 469 (531)
|.|.++-++. |.. +....|.+. +.+..+.| ++++|++... --+|.+|++..+++.. ....
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 8899999865 332 334446555 88999999 9999988764 2479999999876542 2345
Q ss_pred CCceEEEEEccCCCEEEEEeC-CCcEEEEeCCCC
Q 009614 470 REIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDN 502 (531)
Q Consensus 470 ~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~ 502 (531)
......|.|+|++++..+.+. +++|-+|..+..
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 567889999999999877665 889999998873
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=5.6e-06 Score=86.63 Aligned_cols=257 Identities=12% Similarity=0.072 Sum_probs=146.3
Q ss_pred CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc---CC-CEEEEEeCCCcEEEEEcccCccccce
Q 009614 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DG-QYLASGGEDGTVRVWKVIEHERLDGF 322 (531)
Q Consensus 247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg-~~Lasgs~Dg~I~iWd~~~~~~~~~~ 322 (531)
.-++|++...|+|.+||........ .+..|.++|..++|-+ +. ..|+.-..-.+|.+|+..+|+.....
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~-------~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVIN-------WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhh-------hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence 3467888899999999998544332 3677899999999976 33 35666666789999999999987776
Q ss_pred ecCCCCCeeEEEeecCCcceeeeecccccccc-------------ccccc------------------------------
Q 009614 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK-------------TKSLR------------------------------ 359 (531)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~------------------------------ 359 (531)
........|+.+.+-....++.....+..... ...+.
T Consensus 152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit 231 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT 231 (1062)
T ss_pred ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence 65555555555444433333322211111000 00000
Q ss_pred ---------cCCCceEEEeCCccc--cc-cCcceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCC-----
Q 009614 360 ---------KSSDLTCVVLPPKVF--RL-LEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGID----- 419 (531)
Q Consensus 360 ---------~~~~~~~~~~~~~~~--~~-~~~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~----- 419 (531)
.-.+...+.++...+ ++ .+.++....-..+.+.-+.|.|+. .|++...||.+.+|-.+..
T Consensus 232 y~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~ 311 (1062)
T KOG1912|consen 232 YCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK 311 (1062)
T ss_pred HHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc
Confidence 000001111111111 11 022333334445566677788876 8899999999999975531
Q ss_pred -----------eEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE---------------------
Q 009614 420 -----------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------------------- 465 (531)
Q Consensus 420 -----------~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--------------------- 465 (531)
.....+. .+..+......|.....++.--.+|.+.+|.+.+++...
T Consensus 312 ~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~ 391 (1062)
T KOG1912|consen 312 KPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL 391 (1062)
T ss_pred ccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee
Confidence 1111111 122233334455445556666667888999988654110
Q ss_pred -----------ecCCCCceEEEEEcc-----------CC-------CEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 466 -----------YTDIREIVSAVCYCP-----------DG-------KGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 466 -----------~~~~~~~v~~v~~sp-----------dg-------~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
-..|....++....| .| .++++|+..|+|.++|+.++.+...+.+
T Consensus 392 v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv 465 (1062)
T KOG1912|consen 392 VGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSV 465 (1062)
T ss_pred hhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcc
Confidence 012333333333332 22 3678999999999999999887665554
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=1.3e-05 Score=84.01 Aligned_cols=205 Identities=16% Similarity=0.219 Sum_probs=145.7
Q ss_pred cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC------------CEEEEEeCCC
Q 009614 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG------------QYLASGGEDG 306 (531)
Q Consensus 239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg------------~~Lasgs~Dg 306 (531)
+++.|+|.| ++|-|+. ..|.|-|.. .+...|.+.-|+..|+.|.|.|-. -+||++.-.|
T Consensus 19 ~A~Dw~~~G-LiAygsh-slV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGSH-SLVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccCccc-eEEEecC-ceEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 356788876 5566654 567777766 455566788899999999997721 2577788889
Q ss_pred cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (531)
Q Consensus 307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
.|.+||...+.. +..+..
T Consensus 90 rIil~d~~~~s~--------------------------------------------------------------~~~l~~ 107 (1062)
T KOG1912|consen 90 RIILVDFVLASV--------------------------------------------------------------INWLSH 107 (1062)
T ss_pred cEEEEEehhhhh--------------------------------------------------------------hhhhcC
Confidence 999999865542 233455
Q ss_pred CCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 387 HSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 387 h~~~I~~l~~sp~~-----~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
|..++.+++|-+.. .|++-....+|.+|+..+|+.+..+. ......|+.+.|.|.+.|..-+..|.|-+-+.-.
T Consensus 108 ~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 108 SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 67778888887632 67777778899999999999988876 3455677999999999888888889888877542
Q ss_pred -------CeEEE-ecCCCC------------c-------------eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614 461 -------CQVVD-YTDIRE------------I-------------VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 461 -------~~~~~-~~~~~~------------~-------------v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~ 507 (531)
++.+. ..+|.+ . ...++|+|.-+-++....-..+.|+|++-...+..
T Consensus 188 ~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~v 267 (1062)
T KOG1912|consen 188 LSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAV 267 (1062)
T ss_pred CCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEE
Confidence 22222 122211 0 12356788777677777777899999988777777
Q ss_pred eeeeecc
Q 009614 508 NQICLQG 514 (531)
Q Consensus 508 ~~~~~~~ 514 (531)
..++-.+
T Consensus 268 vpier~~ 274 (1062)
T KOG1912|consen 268 VPIERGG 274 (1062)
T ss_pred EEeccCC
Confidence 7665433
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=6.5e-05 Score=77.92 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=75.9
Q ss_pred CCeeEEEEcCCC-eE-EEEeCC--CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCCC
Q 009614 389 SEVLDLSWSKNG-FL-LSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRC 461 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l-~s~s~D--g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~~ 461 (531)
+......|+|+| .| ++.+.+ ..|.++|+.++...+...+........|+| |++.|+-.+. .+ .|.++|+.++
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 344556799999 44 444433 568888988887555444444445668999 8887766553 23 6888899888
Q ss_pred eEEEecCCCCceEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCeEE
Q 009614 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIKDNQLY 505 (531)
Q Consensus 462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---------g~I~iwd~~~~~l~ 505 (531)
+...+...... ...|+|||++|+..... ..|.+.|+.++...
T Consensus 312 ~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 312 SVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 76544322222 24899999998877654 26888898887653
No 295
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.33 E-value=0.00015 Score=74.52 Aligned_cols=236 Identities=16% Similarity=0.130 Sum_probs=131.0
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (531)
++..+++++.++.+..+|..+++...... + .+.+.+.-.. .+..++.++.+|.|..||..+++.+..+...
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~-----~---~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAK-----L---SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeec-----c---CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC
Confidence 46677888889999999987665433211 1 1122211111 3456777888999999999999876655433
Q ss_pred CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC-cceeEeecCC-----CCe-eEEEEcC
Q 009614 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHS-----SEV-LDLSWSK 398 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~-----~~I-~~l~~sp 398 (531)
..... ... ....+. . + . ..+.+..++.+..++.......- .......+.. ..+ ....+ .
T Consensus 175 ~~~~~---~~~-~~sp~~-~--~-~-----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~ 240 (377)
T TIGR03300 175 TPALT---LRG-SASPVI-A--D-G-----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-D 240 (377)
T ss_pred CCcee---ecC-CCCCEE-E--C-C-----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-E
Confidence 21100 000 000000 0 0 0 01122223334333332211100 0000000000 000 01111 1
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCC-ceEEE
Q 009614 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIRE-IVSAV 476 (531)
Q Consensus 399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~-~v~~v 476 (531)
++.++.++.++.+..||..+++.+........ ..... .+..++.++.||.|..+|..+++.+- ...... .....
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP 316 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence 34788888899999999999988776653221 22222 45678888899999999999998763 212111 11222
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 477 ~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
.. .+..|++++.+|.|+++|..+++++.+.++
T Consensus 317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 317 AV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 22 466899999999999999999999987764
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.32 E-value=5.9e-06 Score=76.15 Aligned_cols=216 Identities=13% Similarity=0.130 Sum_probs=120.7
Q ss_pred EcccCC-CEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccc
Q 009614 280 FLAHEG-SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (531)
Q Consensus 280 l~~H~~-~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (531)
+.+|.+ .|+.+.++.+. .|+++..++.+......++.+...............+. .+ ....+ ............
T Consensus 31 i~~~~d~~~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a-~~-sep~p--~~~~s~~~t~V~ 105 (319)
T KOG4714|consen 31 IMQHADVKLSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLA-KN-SEIDP--NDACTMTDNRVC 105 (319)
T ss_pred cccccceEEEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeee-cc-CCCCC--cccccccCCceE
Confidence 344443 36666666443 67788788877777665554433322211111111111 00 00000 000011223335
Q ss_pred ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeC------CCcEEEEECCCCeEEEEe-ecCCce
Q 009614 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSA------DKTVRLWQVGIDRCLRVF-SHNNYV 431 (531)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~------Dg~V~lwdl~~~~~l~~~-~h~~~V 431 (531)
.+..++...+++.+.... ..+....-...-.+.++...+.++.+.. -+..+.|+++..+.+..- .....|
T Consensus 106 ~~~~dg~~~v~s~~~~~~---~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v 182 (319)
T KOG4714|consen 106 IGYADGSLAVFSTDKDLA---LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV 182 (319)
T ss_pred ecCCCceEEEEechHHHh---hhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence 566677666666544111 0111111111122233333443333322 234556665543322211 133459
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCceEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCe
Q 009614 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
++++-+|...+++++|+.||.+-+||.+..... .+..|+..++.+-|+| ++..|++++.||.+.-||..+.-
T Consensus 183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~ 257 (319)
T KOG4714|consen 183 TALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF 257 (319)
T ss_pred hhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence 999999977888999999999999999987544 3788999999999999 56889999999999999998643
No 297
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.31 E-value=1.9e-06 Score=56.89 Aligned_cols=37 Identities=46% Similarity=0.934 Sum_probs=34.6
Q ss_pred cceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEE
Q 009614 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ 415 (531)
Q Consensus 379 ~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwd 415 (531)
+++.++.+|.+.|.+|+|+|++ +|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3578899999999999999998 999999999999997
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=4.2e-06 Score=80.00 Aligned_cols=156 Identities=15% Similarity=0.245 Sum_probs=108.7
Q ss_pred CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC
Q 009614 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD 326 (531)
Q Consensus 247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~ 326 (531)
|..+++| .+..|-+-++.++... .|. .++.|.++.|...++++..|..+|.|...|++....-
T Consensus 225 gyhfs~G-~sqqv~L~nvetg~~q--------sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG------- 287 (425)
T KOG2695|consen 225 GYHFSVG-LSQQVLLTNVETGHQQ--------SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG------- 287 (425)
T ss_pred eeeeccc-ccceeEEEEeeccccc--------ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC-------
Confidence 3343344 4566777777654321 233 5678999999998999999999999999999765210
Q ss_pred CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC-CC-eEEE
Q 009614 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLS 404 (531)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp-~~-~l~s 404 (531)
... +.+ -.-|...|+++.... ++ +|++
T Consensus 288 -~~~-------------------------------------------------~a~-rlyh~Ssvtslq~Lq~s~q~Lma 316 (425)
T KOG2695|consen 288 -NGW-------------------------------------------------CAQ-RLYHDSSVTSLQILQFSQQKLMA 316 (425)
T ss_pred -CCc-------------------------------------------------ceE-EEEcCcchhhhhhhccccceEee
Confidence 000 011 123778888888776 44 9999
Q ss_pred EeCCCcEEEEECCCCeE---EEEee-cCCceEE--EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC
Q 009614 405 SSADKTVRLWQVGIDRC---LRVFS-HNNYVTS--VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (531)
Q Consensus 405 ~s~Dg~V~lwdl~~~~~---l~~~~-h~~~V~s--v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~ 471 (531)
.+++|+|++||++.-++ +..+. |-+.-.- +-.+| ....+++++.|...|||.++.++++.......
T Consensus 317 S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 317 SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 99999999999997777 66654 4332222 23345 56788889999999999999999886544433
No 299
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.27 E-value=0.002 Score=64.65 Aligned_cols=86 Identities=10% Similarity=0.044 Sum_probs=56.9
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEeCCCCe-----EEEecC--------CCCceEEEEEccCCCEEEEEeC----------C
Q 009614 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQ-----VVDYTD--------IREIVSAVCYCPDGKGGIVGTM----------T 491 (531)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-----~~~~~~--------~~~~v~~v~~spdg~~l~sgs~----------d 491 (531)
.|.+.++.++..... |+|.+.|+.... ...... ....+.-++++|+++.+++... .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 445546777666555 999999965532 222111 1233455999999999888532 2
Q ss_pred CcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 492 GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 492 g~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
+.|.++|+.+++.+..+... ..+.+|+|+|
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG---------~~~~~iavS~ 308 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELG---------HEIDSINVSQ 308 (352)
T ss_pred CEEEEEECCCCeEEEEEeCC---------CceeeEEECC
Confidence 47999999999998876642 4556666654
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.27 E-value=4.3e-06 Score=86.97 Aligned_cols=202 Identities=15% Similarity=0.211 Sum_probs=129.9
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC--CCCCeeEEEeecCCcceeeeeccccccccccccccC
Q 009614 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (531)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (531)
.+++.++..+|.|+-+|.++.-|. .+-|+...-....+-.+ .-.+....|.+........+.....+.. ...+..+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai-iwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh-hhhhhcC
Confidence 467888999999999999988774 44555432211111111 1112223333333333222222222111 1111222
Q ss_pred CCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEe
Q 009614 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFN 437 (531)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fs 437 (531)
.+. ..-..+.+|...|+++.|+|+. .|++++.|-.|..||+++. .++..+. -....+.|+|+
T Consensus 102 s~~--------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 102 SSN--------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred Ccc--------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 222 2244578899999999999988 9999999999999999874 3455543 34456789999
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCeE-E-EecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q 009614 438 PVDDNYFISGSIDGKVRIWEVRRCQV-V-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 438 p~d~~~l~sgs~Dg~I~Iwd~~~~~~-~-~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~~ 502 (531)
-.+++.+|+ +....|++||++.+.- + ...+|...|+.+.|..- -..+.+.+.||+|++||....
T Consensus 168 yk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 168 YKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 867776665 4567899999998743 3 46778888888888652 345788999999999998654
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.25 E-value=0.00022 Score=67.95 Aligned_cols=217 Identities=13% Similarity=0.085 Sum_probs=121.7
Q ss_pred CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEe
Q 009614 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335 (531)
Q Consensus 256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~ 335 (531)
+|.|..+|..+++..... .+..-.....+. ..+++.++++++.++.|..||..+|+.+.............
T Consensus 2 ~g~l~~~d~~tG~~~W~~-----~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--- 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-----DLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--- 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-----ECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE---
T ss_pred CCEEEEEECCCCCEEEEE-----ECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee---
Confidence 577888888765544321 111101222221 23356678888899999999999999877666532211110
Q ss_pred ecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecC----C-CCeeEEEEcCCCeEEEEeCCC
Q 009614 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGH----S-SEVLDLSWSKNGFLLSSSADK 409 (531)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h----~-~~I~~l~~sp~~~l~s~s~Dg 409 (531)
......+ +....++.++.++..... .+... ... . .......+. .+.++.+..++
T Consensus 73 ~~~~~~v---------------~v~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 132 (238)
T PF13360_consen 73 VVDGGRV---------------YVGTSDGSLYALDAKTGK----VLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSG 132 (238)
T ss_dssp EEETTEE---------------EEEETTSEEEEEETTTSC----EEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCS
T ss_pred eeccccc---------------ccccceeeeEecccCCcc----eeeeeccccccccccccccCceEe-cCEEEEEeccC
Confidence 0001111 111122244444433221 12221 111 1 111222222 33888888899
Q ss_pred cEEEEECCCCeEEEEeecCC-c----------e-EEEEEeeCCCCEEEEEeCCCe-EEEEeCCCCeEEEecCCCCceEEE
Q 009614 410 TVRLWQVGIDRCLRVFSHNN-Y----------V-TSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVDYTDIREIVSAV 476 (531)
Q Consensus 410 ~V~lwdl~~~~~l~~~~h~~-~----------V-~sv~fsp~d~~~l~sgs~Dg~-I~Iwd~~~~~~~~~~~~~~~v~~v 476 (531)
.|..+|+.+|+.+..+.-.. . + ..+.+. ++ .++.++.++. +.+ |+.+++.+ +......+..
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~- 206 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYS- 206 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECE-
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccC-
Confidence 99999999999988775211 1 1 222222 34 7777777775 555 99999976 4333233322
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614 477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 477 ~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~ 507 (531)
...+++..|++++.++.|..||+.+|+.+.+
T Consensus 207 ~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 207 LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 1456778888888999999999999998754
No 302
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=2e-05 Score=83.28 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=60.0
Q ss_pred cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (531)
Q Consensus 239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 317 (531)
.+++|+|..-.|+.|-.-|.+.+|........ .....|+.+|..+.||++|..|+|+..=|.|.+|......
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCCceee-------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 35899999999999999999999988754321 1234599999999999999999999999999999876433
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00016 Score=76.53 Aligned_cols=177 Identities=15% Similarity=0.260 Sum_probs=121.2
Q ss_pred cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (531)
Q Consensus 237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 316 (531)
.+.|.++ .+++++.|+..|.|++.+...... +...|... ..+|.+++||+.||+|.|-.+.+.
T Consensus 41 ~is~~av--~~~~~~~GtH~g~v~~~~~~~~~~---------~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 41 AISCCAV--HDKFFALGTHRGAVYLTTCQGNPK---------TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred HHHHHHh--hcceeeeccccceEEEEecCCccc---------cccccccc------ccCCceEEEecCCCcEEEeeccCC
Confidence 3334444 467899999999999998874321 12334443 668999999999999999887665
Q ss_pred ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (531)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 396 (531)
+....+. -..++.++++
T Consensus 104 ~~~~~~d---------------------------------------------------------------f~rpiksial 120 (846)
T KOG2066|consen 104 DEITQYD---------------------------------------------------------------FKRPIKSIAL 120 (846)
T ss_pred ccceeEe---------------------------------------------------------------cCCcceeEEe
Confidence 5322211 2346788888
Q ss_pred cCC------CeEEEEeCCCcEEEEECC---CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614 397 SKN------GFLLSSSADKTVRLWQVG---IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (531)
Q Consensus 397 sp~------~~l~s~s~Dg~V~lwdl~---~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~ 467 (531)
+|+ +.+++|+..| +.++.-+ ....+..-...++|.++.| .++++|-++.+| |+|||+.+.+.+...
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeecc
Confidence 887 2899999988 7777543 2222222236789999999 568888887665 999999998877532
Q ss_pred CCC-C------ceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 468 DIR-E------IVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 468 ~~~-~------~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
... . -...+.|.++.+ |+.|- ..+|+|..++
T Consensus 196 ~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 196 PPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred CCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 221 1 245678887654 55554 4468888887
No 304
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=4.4e-05 Score=78.56 Aligned_cols=91 Identities=16% Similarity=0.330 Sum_probs=72.6
Q ss_pred EEEEECCCCeEE----EEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEE
Q 009614 411 VRLWQVGIDRCL----RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (531)
Q Consensus 411 V~lwdl~~~~~l----~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 486 (531)
-.+|++..++.. ..+..+..|.|++++| +...|+.|+.||.|.+||...+... .....-.++.++|+|+|..++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEE
Confidence 346666544322 2334889999999999 9999999999999999999877433 334556789999999999999
Q ss_pred EEeCCCcEEEEeCCCCe
Q 009614 487 VGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 487 sgs~dg~I~iwd~~~~~ 503 (531)
+|+..|.+.+||+.-+-
T Consensus 316 V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 316 VGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCceEEEEEeecCc
Confidence 99999999999986443
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.12 E-value=0.00053 Score=63.80 Aligned_cols=227 Identities=11% Similarity=-0.005 Sum_probs=126.1
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCccccceec
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 324 (531)
...+||.|+..|...+|...+....+. ....|...|+-+.=..+ ..-+..++.|.++++.++..+........
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCccccee------eecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec
Confidence 345788999999999998875443221 11223333322221112 22467788999999998865543332222
Q ss_pred CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEe--CCccccccCccee-EeecCCCCeeEEEEcCCC-
Q 009614 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL--PPKVFRLLEKPLH-EFQGHSSEVLDLSWSKNG- 400 (531)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~h~~~I~~l~~sp~~- 400 (531)
+.-....+.+..+.. +.+ ..+....+..| +..... .+. ........-.+..|+...
T Consensus 157 ~~~~~ns~~~snd~~--~~~--------------~Vgds~~Vf~y~id~~sey----~~~~~~a~t~D~gF~~S~s~~~~ 216 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPS--WGS--------------SVGDSRRVFRYAIDDESEY----IENIYEAPTSDHGFYNSFSENDL 216 (344)
T ss_pred cccceeeeEEcCCCc--eEE--------------EecCCCcceEEEeCCccce----eeeeEecccCCCceeeeeccCcc
Confidence 211112222222211 111 11111112222 111111 111 122234455678898888
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEe------ecCCceEEEEEeeCCCC--EEEEEeCCCeEEEEeCCCCeEEE-------
Q 009614 401 FLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQVVD------- 465 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~l~~~------~h~~~V~sv~fsp~d~~--~l~sgs~Dg~I~Iwd~~~~~~~~------- 465 (531)
.+|++..||++.|||++.......+ .|++.+..+.|+| .+. +|...-.-+.+.+-|+++.+-..
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 9999999999999999865433322 2899999999997 432 44444445789999999875332
Q ss_pred -ecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 466 -YTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 466 -~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
...|. ..|...+|+.++..+.+.+.+. +.=|++.
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL 331 (344)
T ss_pred ccccccccccccccccCCCcccccccchh-hheeecc
Confidence 12222 3477888888887776666542 4445544
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.12 E-value=2.4e-05 Score=73.88 Aligned_cols=168 Identities=21% Similarity=0.441 Sum_probs=112.6
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc-c----ccceecCCCCCeeEEEeecCCcceeeeecccccccccccc
Q 009614 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-R----LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (531)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (531)
...|++|.|...|.||++|...|.|.++.-.... + ...++.+....
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF----------------------------- 76 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF----------------------------- 76 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccch-----------------------------
Confidence 4579999999999999999999999999754322 0 00011100000
Q ss_pred ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCe---------------
Q 009614 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDR--------------- 420 (531)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~--------------- 420 (531)
..+..+ .-...|..|.|..++ .++..+.|++|++|.+....
T Consensus 77 --------------------DYLkSl-eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~ 135 (460)
T COG5170 77 --------------------DYLKSL-EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHS 135 (460)
T ss_pred --------------------hhhhhc-cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccccc
Confidence 000000 012457788887764 78888999999999885320
Q ss_pred ---------------------------EEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC----eEEEec
Q 009614 421 ---------------------------CLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVVDYT 467 (531)
Q Consensus 421 ---------------------------~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~----~~~~~~ 467 (531)
+.+.+ .|+..|.+|.|+. |...++++ .|-.|.+|++.-. .++...
T Consensus 136 ~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiK 213 (460)
T COG5170 136 PMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIK 213 (460)
T ss_pred ccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCceEEEecc
Confidence 01112 2777889999998 77777664 6789999998642 345555
Q ss_pred CCC-----CceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe
Q 009614 468 DIR-----EIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 468 ~~~-----~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~ 503 (531)
.|. ..|++..|+|.. ..+.-.+..|.|++-|++...
T Consensus 214 P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 214 PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 543 468999999954 566778889999999998443
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00046 Score=73.69 Aligned_cols=209 Identities=14% Similarity=0.147 Sum_probs=133.6
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCC-EEEEEEccCCCEEEEEeCCCc-----EEEEEcc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGT-----VRVWKVI 314 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~-----I~iWd~~ 314 (531)
-++++++..+|.|+.+|.|.+.+-. +...+.+++|... |..+....+..+|++.+.|+. |+||++.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s--------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS--------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc--------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4788999999999999999888754 2223457777777 444444444468888887754 8999986
Q ss_pred cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (531)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 394 (531)
..+.. ..+.|+.. ..+++ ..+.....++.++
T Consensus 101 k~~~n-------~sP~c~~~-------------------------------~ri~~-----------~~np~~~~p~s~l 131 (933)
T KOG2114|consen 101 KVDKN-------NSPQCLYE-------------------------------HRIFT-----------IKNPTNPSPASSL 131 (933)
T ss_pred ccCCC-------CCcceeee-------------------------------eeeec-----------cCCCCCCCcceEE
Confidence 54310 00222210 00000 0011235678888
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECC---C--CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE-E-Ee
Q 009614 395 SWSKNG-FLLSSSADKTVRLWQVG---I--DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-V-DY 466 (531)
Q Consensus 395 ~~sp~~-~l~s~s~Dg~V~lwdl~---~--~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~-~-~~ 466 (531)
+++.+- .++.|-.+|.|..+.-. . .+.........+||.+++.. ++..++-...-..|.+|.+....+ . ..
T Consensus 132 ~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l 210 (933)
T KOG2114|consen 132 AVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVL 210 (933)
T ss_pred EEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCCCcceeee
Confidence 888877 88999999999998532 1 11222223568999999987 676522223345799999986552 2 35
Q ss_pred cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~ 508 (531)
..+...+.+..+++....+++++. .-+.+|+....++.-.+
T Consensus 211 d~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 211 DNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAF 251 (933)
T ss_pred ccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeee
Confidence 666778888888876655666664 45999998866554443
No 308
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.03 E-value=0.00075 Score=69.36 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=129.4
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (531)
.+..+.+++.+|.|..+|..+++...... +.+ ....... .++..++.++.+|.+..+|..+|+.+......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-----~~~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVD-----LDE--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeec-----CCC--CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 46678888888999999987666443211 111 1011112 24667888889999999999999876554432
Q ss_pred CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe-----eEEEEcCCC
Q 009614 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV-----LDLSWSKNG 400 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I-----~~l~~sp~~ 400 (531)
......... . ....+....++.++.++...... +..+......+ ...... ++
T Consensus 135 ~~~~~~p~v-------------~-----~~~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~~~~~~~~sp~~~-~~ 191 (377)
T TIGR03300 135 SEVLSPPLV-------------A-----NGLVVVRTNDGRLTALDAATGER----LWTYSRVTPALTLRGSASPVIA-DG 191 (377)
T ss_pred ceeecCCEE-------------E-----CCEEEEECCCCeEEEEEcCCCce----eeEEccCCCceeecCCCCCEEE-CC
Confidence 210000000 0 00112223455566665543221 11111111000 011111 34
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeecCCc--------eEEEEEee-CCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC
Q 009614 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNY--------VTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~--------V~sv~fsp-~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~ 471 (531)
.++.+..++.+..+|..+++.+........ +..+.-+| ..+..+++++.+|.++.||..+++.+-......
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~ 271 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS 271 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC
Confidence 778888899999999999987765431100 00111111 134578888889999999999998763222221
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 472 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~ 508 (531)
.... ..++..+++++.+|.++.+|..+++++.+.
T Consensus 272 -~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 272 -YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred -ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 1112 235678888889999999999999887654
No 309
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.99 E-value=1.7e-06 Score=88.87 Aligned_cols=191 Identities=18% Similarity=0.354 Sum_probs=126.0
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEe----CCCcEEEEEcccCcccc
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG----EDGTVRVWKVIEHERLD 320 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs----~Dg~I~iWd~~~~~~~~ 320 (531)
+...+++|..+|.|.+-..+..... ......+|....++++|++ |.+.||.|- .|..+.|||+.++-...
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP 143 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP 143 (783)
T ss_pred chhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence 3457788999999999887754332 1123557888999999998 667777773 36789999997653200
Q ss_pred ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee-cCCCCeeEEEEcCC
Q 009614 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKN 399 (531)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~sp~ 399 (531)
... ..+. +......+++|..+
T Consensus 144 -----ke~-----------------------------------------------------~~fs~~~l~gqns~cwlrd 165 (783)
T KOG1008|consen 144 -----KES-----------------------------------------------------PLFSSSTLDGQNSVCWLRD 165 (783)
T ss_pred -----ccc-----------------------------------------------------cccccccccCccccccccC
Confidence 000 0000 11233447888876
Q ss_pred C-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe-CCCCe-EEEecC-----CCC
Q 009614 400 G-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQ-VVDYTD-----IRE 471 (531)
Q Consensus 400 ~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd-~~~~~-~~~~~~-----~~~ 471 (531)
. ++++|...+.+.++|++........-....+..+...|..++|+++-. ||.|.+|| .++-+ ++.... ...
T Consensus 166 ~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~ 244 (783)
T KOG1008|consen 166 TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPK 244 (783)
T ss_pred cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCccc
Confidence 6 888888888999999984332222223456778888888888998876 99999999 43322 222111 123
Q ss_pred ceEEEEEccCC--CEEEEEeCCCcEEEEeCC
Q 009614 472 IVSAVCYCPDG--KGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 472 ~v~~v~~spdg--~~l~sgs~dg~I~iwd~~ 500 (531)
.+..++|+|-. ...+..-..++|++||+.
T Consensus 245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 245 QLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 58999999954 333344456789999985
No 310
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.97 E-value=0.00072 Score=69.85 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=74.9
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe--
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-- 462 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-- 462 (531)
.....|.+.+++|+. .|+.|+.||.|.+||...+..... ...-.++.++||| ++.+|++|+.-|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence 467789999999998 999999999999999977754433 4566689999999 99999999999999999986422
Q ss_pred ------------EEE---ecCCCCceEEEEEccCC
Q 009614 463 ------------VVD---YTDIREIVSAVCYCPDG 482 (531)
Q Consensus 463 ------------~~~---~~~~~~~v~~v~~spdg 482 (531)
.+. +..+...+..+.|.+..
T Consensus 335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred eeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 122 33445567778888544
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.94 E-value=0.00094 Score=73.98 Aligned_cols=246 Identities=12% Similarity=0.152 Sum_probs=140.4
Q ss_pred ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 315 (531)
+.+.++.|..++..++.+...|.|.+-|......+.. ..-...|.+++|+||+..++..+..+++.+-. .+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--------GNVDNGISAASWSPDEELLALITGRQTLLFMT-KD 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee--------eeccCceEEEeecCCCcEEEEEeCCcEEEEEe-cc
Confidence 5666788999999999999999999997765443321 22356899999999999999998888776643 22
Q ss_pred CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 395 (531)
...+..-+.... ....+..+.+.+..... .+.++..... .. ......+...... -...=+.|+
T Consensus 140 f~~i~E~~L~~d--------~~~~sk~v~VGwGrkeT----qfrgs~gr~~-~~---~~~~~ek~~~~~~-~~~~~~~Is 202 (1265)
T KOG1920|consen 140 FEPIAEKPLDAD--------DERKSKFVNVGWGRKET----QFRGSEGRQA-AR---QKIEKEKALEQIE-QDDHKTSIS 202 (1265)
T ss_pred ccchhccccccc--------cccccccceecccccce----eeecchhhhc-cc---ccccccccccchh-hccCCceEE
Confidence 222211111000 00111111111111100 0111110000 00 0000000000001 112235789
Q ss_pred EcCCC-eEEEEe----CC-CcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEe---CCCeEEEEeCCCCe---
Q 009614 396 WSKNG-FLLSSS----AD-KTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQ--- 462 (531)
Q Consensus 396 ~sp~~-~l~s~s----~D-g~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs---~Dg~I~Iwd~~~~~--- 462 (531)
|.-+| ++++.. .+ +.|++||-+ +..-.+- ...+.-.+++|-| .|.++++-. .|+.|.+|....-+
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~ 280 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGE 280 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccc
Confidence 99999 776632 33 789999987 3322211 1334457899999 888888743 45679998866432
Q ss_pred EE-EecCCCCceEEEEEccCCCEEEE---EeCCCcEEEEeCCCCeEEEEee
Q 009614 463 VV-DYTDIREIVSAVCYCPDGKGGIV---GTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 463 ~~-~~~~~~~~v~~v~~spdg~~l~s---gs~dg~I~iwd~~~~~l~~~~~ 509 (531)
.. .+......+..++|+.++..|++ ......|++|-+.+.+...+..
T Consensus 281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~ 331 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE 331 (1265)
T ss_pred cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE
Confidence 22 23333344999999999999988 4444459999999877654443
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00012 Score=77.62 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=88.8
Q ss_pred CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeC----CCCEEEEEeCCCeEEEEeCC---CCeEEEecCCC
Q 009614 399 NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVR---RCQVVDYTDIR 470 (531)
Q Consensus 399 ~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~----d~~~l~sgs~Dg~I~Iwd~~---~~~~~~~~~~~ 470 (531)
.| ++++|+.||+|.|-.+-+.+...++...-++.+|+++|. ..+.+++|+.-| +.++.-+ ....+......
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 46 999999999999999999999998988899999999993 256899999888 7777643 22333566778
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 471 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
++|.+++|. |+++|-++.+| |++||+.+++.+..++.
T Consensus 161 G~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 161 GPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred cceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCC
Confidence 899999994 67888888777 99999999888876654
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00044 Score=67.77 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=126.3
Q ss_pred eeccccceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCcEEEE
Q 009614 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVW 311 (531)
Q Consensus 234 ~~~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iW 311 (531)
+-..+..++|+|..+ ++..++.+.+|+|.|+...... +.+..| ..+|+++|.-|. .+|..|-..|.|.||
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v-------ssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV-------SSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceee-------eheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 344566789999888 7788999999999999854433 335566 789999998865 477888889999999
Q ss_pred EcccCcccc-ceec--CCCCCeeEEEe-ecC---CcceeeeeccccccccccccccCCCceEEEeCCccccccCccee-E
Q 009614 312 KVIEHERLD-GFDV--QDTDPSCLYFT-INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-E 383 (531)
Q Consensus 312 d~~~~~~~~-~~~~--~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 383 (531)
|++..+-.. .+.. ...++..+... ++. ...+.+.....- ..+.+..+.+ .+.. .
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l---~f~ei~~s~~---------------~~p~vl 325 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL---QFYEIVFSAE---------------CLPCVL 325 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhh---hhhhhhcccc---------------CCCccc
Confidence 997654321 1111 01111111100 000 000000000000 0000000000 1111 1
Q ss_pred eecCCCCeeEEEEcCCC--eEEEEeCCCc------EE-EEECCCCeEEEEee--c-CCc-----eEEEEEeeCCCCEEEE
Q 009614 384 FQGHSSEVLDLSWSKNG--FLLSSSADKT------VR-LWQVGIDRCLRVFS--H-NNY-----VTSVAFNPVDDNYFIS 446 (531)
Q Consensus 384 ~~~h~~~I~~l~~sp~~--~l~s~s~Dg~------V~-lwdl~~~~~l~~~~--h-~~~-----V~sv~fsp~d~~~l~s 446 (531)
-.+..+...++.+++.. .|++.-.+.+ |- --|-..|..+..-. + ..+ -+...+.+-+.++++.
T Consensus 326 ele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 326 ELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred ccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 12234556666666633 4444332211 00 01122232222111 1 110 1112232224455554
Q ss_pred -EeCCCeEEEEeCCCCeEEEecCCCCceEEEEEcc-CC-CEEEEEeCCCcEEEEeCC
Q 009614 447 -GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DG-KGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 447 -gs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~sp-dg-~~l~sgs~dg~I~iwd~~ 500 (531)
|..-..+.+||..+.+++.......+|..++... +| .+|++-+ |..++||..+
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 4455789999999999998888889999998765 33 3555444 6789998754
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=1.3e-05 Score=85.00 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=126.3
Q ss_pred ccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccc
Q 009614 271 LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE 350 (531)
Q Consensus 271 ~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (531)
++.+...+.++.|+..-+|++|+.+.+.|+.|+..|.|+++++.+|...
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e------------------------------- 1136 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME------------------------------- 1136 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-------------------------------
Confidence 4455556678899999999999999999999999999999999887632
Q ss_pred ccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCC-cEEEEECCC-CeEEEEee
Q 009614 351 KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADK-TVRLWQVGI-DRCLRVFS 426 (531)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg-~V~lwdl~~-~~~l~~~~ 426 (531)
....+|..+|+-+.-+.+| .|.+++... ...+|++.. +...+.|.
T Consensus 1137 -------------------------------~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ 1185 (1516)
T KOG1832|consen 1137 -------------------------------ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD 1185 (1516)
T ss_pred -------------------------------ccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc
Confidence 2345688899999888888 444444443 578999864 44555554
Q ss_pred cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--e---cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--Y---TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~---~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~ 501 (531)
. -.++.|+. .-..-+.|+.-..+.|||+.++.++. + ......-+.+.|+|+..+++- || .+||++.
T Consensus 1186 e---d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1186 E---DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRI 1256 (1516)
T ss_pred c---cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeecc
Confidence 2 35678877 44444555555689999999987652 1 122223367889999887653 44 3899988
Q ss_pred CeEEEE---eeeeecccccCCCce
Q 009614 502 NQLYQQ---NQICLQGKKKLPGKR 522 (531)
Q Consensus 502 ~~l~~~---~~~~~~~~kk~~~~~ 522 (531)
.+.++. +.+.+.|...+++..
T Consensus 1257 ~~aIh~FD~ft~~~~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1257 PEAIHRFDQFTDYGGGGFHPSGNE 1280 (1516)
T ss_pred HHHHhhhhhheecccccccCCCce
Confidence 766543 445555555555543
No 315
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=9.7e-05 Score=74.94 Aligned_cols=128 Identities=17% Similarity=0.275 Sum_probs=94.2
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-----------CCeEEEEeC
Q 009614 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-----------DGKVRIWEV 458 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-----------Dg~I~Iwd~ 458 (531)
-+-+.|||.| +|++-...| |.+|--.+-..++.|.|++ |.-+.|+| ..+||++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4678999999 888877665 7899877777788888875 78899999 9999998553 257999999
Q ss_pred CCCeEEEec-C--CCCce-EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 459 RRCQVVDYT-D--IREIV-SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 459 ~~~~~~~~~-~--~~~~v-~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
++|...... . ....+ .-..||.|++++|.-.. ..|.||+..+-.++....+.+ .-|..+.|+|
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--------~gIr~FswsP 356 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--------SGIRDFSWSP 356 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC--------ccccCcccCC
Confidence 999876422 1 12222 33689999999988776 569999998866665444332 3355666666
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.83 E-value=0.0022 Score=60.55 Aligned_cols=191 Identities=13% Similarity=0.116 Sum_probs=102.3
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-ccCCCEEEEEEccCC------CEEEEEeCCCcEEEEEc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDG------QYLASGGEDGTVRVWKV 313 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg------~~Lasgs~Dg~I~iWd~ 313 (531)
++|+||+.+||.+...|+|+++|+.....- .......+. .-..+|-.|.|-+.. ..|+.-...|.++-+-+
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf--~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSELF--VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccceeE--EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 699999999999999999999999753321 111111111 124678888886522 24666677888888876
Q ss_pred ccC--c---cccceecC---CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614 314 IEH--E---RLDGFDVQ---DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (531)
Q Consensus 314 ~~~--~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
..+ + ....+... ...+.++.+.+.+.-.+++....... ..-.
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~------------------------------~~s~ 176 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQD------------------------------GMSK 176 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCC------------------------------cccc
Confidence 432 1 12222221 22333334443332221111100000 0000
Q ss_pred cCCCCeeEEEEcCCC---eEEEEeCCCc------EEEEECCCCeEEEE-eecCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614 386 GHSSEVLDLSWSKNG---FLLSSSADKT------VRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~---~l~s~s~Dg~------V~lwdl~~~~~l~~-~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I 455 (531)
+....+++-..-.+. ..++...|+. -.+|.+-+.+.... ......|..|..+| |+.+||+...+|.|.+
T Consensus 177 a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsL 255 (282)
T PF15492_consen 177 ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSL 255 (282)
T ss_pred ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEE
Confidence 111222222222221 3333333322 23343332221111 12467899999999 9999999999999999
Q ss_pred EeCCCCeEE
Q 009614 456 WEVRRCQVV 464 (531)
Q Consensus 456 wd~~~~~~~ 464 (531)
|++.+-++.
T Consensus 256 W~iPsL~~~ 264 (282)
T PF15492_consen 256 WEIPSLRLQ 264 (282)
T ss_pred EecCcchhh
Confidence 999987655
No 317
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.79 E-value=0.0097 Score=57.11 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=76.0
Q ss_pred eeEEEEc-CCCeEEEEeCCCcEEEEECCCCeEEEEee------cCCceEEEEEeeCCCCEEEEEeCC--------CeEEE
Q 009614 391 VLDLSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSID--------GKVRI 455 (531)
Q Consensus 391 I~~l~~s-p~~~l~s~s~Dg~V~lwdl~~~~~l~~~~------h~~~V~sv~fsp~d~~~l~sgs~D--------g~I~I 455 (531)
...+++. +++.|+.+...+ +.++|..+++...... .....+.+++.| ++++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5666777 667777776655 4555999886655443 235678999999 89887776644 56888
Q ss_pred EeCCCCeEEEecCCCCceEEEEEccCCCEEE-EEeCCCcEEEEeCCC
Q 009614 456 WEVRRCQVVDYTDIREIVSAVCYCPDGKGGI-VGTMTGNCRFYDIKD 501 (531)
Q Consensus 456 wd~~~~~~~~~~~~~~~v~~v~~spdg~~l~-sgs~dg~I~iwd~~~ 501 (531)
++.. +++......-...+.|+|+||++.|+ +-+..+.|..|++..
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccc
Confidence 8888 66554444456678999999998775 556678899999863
No 318
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.77 E-value=0.0016 Score=66.71 Aligned_cols=245 Identities=13% Similarity=0.116 Sum_probs=123.1
Q ss_pred ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccc-----c-------------------------------ccccceEEc
Q 009614 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSREL-----S-------------------------------SLYTGQEFL 281 (531)
Q Consensus 238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~-----~-------------------------------~~~~~~~l~ 281 (531)
|.++.|.++...|++|...|.|.||.+...+..- . .+....-+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 4568899999999999999999999765432110 0 000111245
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC--------CCCeeEEEeecCCcceeeeeccccccc
Q 009614 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD--------TDPSCLYFTINHLSQLIPIDVDKEKID 353 (531)
Q Consensus 282 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (531)
...++|++++.|.=| ++|.|..+|.+.|.|++....+..-.... ..+.++.|. .+........
T Consensus 84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~--------vm~~~~D~yS 154 (395)
T PF08596_consen 84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS--------VMTLGGDGYS 154 (395)
T ss_dssp --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE--------EEE-TTSSSE
T ss_pred ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE--------EEecCCCccc
Confidence 567999999998555 89999999999999997766554432222 112233332 1122222233
Q ss_pred cccccccCCCceEEEeCCcc---ccccCcceeEeecCCCCeeEEEEc-C-----------------CC----eEEEEeCC
Q 009614 354 KTKSLRKSSDLTCVVLPPKV---FRLLEKPLHEFQGHSSEVLDLSWS-K-----------------NG----FLLSSSAD 408 (531)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~I~~l~~s-p-----------------~~----~l~s~s~D 408 (531)
....+.++..+.+++|.... ....-........+.+.|..|..- . .+ .++....+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 33344455555555553311 111111122222344555444321 0 11 24444557
Q ss_pred CcEEEEECCCCeEEEEee-cCCceEEEEEee----CCCCEEEEEeCCCeEEEEeCCCCeEEEecCC-----CCceEEEEE
Q 009614 409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP----VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-----REIVSAVCY 478 (531)
Q Consensus 409 g~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp----~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~-----~~~v~~v~~ 478 (531)
..+|++...+.+..+..- ..-....+++-+ ..+..|++-..+|.|++|.+..-+.+..... ...+...++
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 789999998877655443 222333444521 1466788889999999999999776632221 123445677
Q ss_pred ccCCCEEEEEeCC
Q 009614 479 CPDGKGGIVGTMT 491 (531)
Q Consensus 479 spdg~~l~sgs~d 491 (531)
+++|..++-.+..
T Consensus 315 s~~Gdi~~~~gps 327 (395)
T PF08596_consen 315 SRNGDIFYWTGPS 327 (395)
T ss_dssp -TTS-EEEE-SSS
T ss_pred CCCCCEEEEeCcc
Confidence 8999877666543
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.77 E-value=0.0013 Score=62.70 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=79.9
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCC---CCc
Q 009614 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDI---REI 472 (531)
Q Consensus 398 p~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~--~~~---~~~ 472 (531)
.++.+++++.++.|..||..+++.+..+.....+...... .+..++.++.++.|+.+|..+++++-. ... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 4457888889999999999999998888644332222222 456677777888999999999988732 211 112
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
........++..++++..+|.|+.+|+++|+++.+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 23334444588899999999999999999999887765
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.75 E-value=0.0095 Score=61.62 Aligned_cols=236 Identities=8% Similarity=0.070 Sum_probs=126.3
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEE-EEEccCCCEEEEEeCCCcEEEEEcccCccccceec
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 324 (531)
.+..++.++.+|.+..+|..+++....... . +.+.+ ... .+..++.+..+|.|..+|..+|+.+..+..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-----~---~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKV-----A---GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccC-----C---CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 345667777889999999887765443211 1 11111 111 234667778899999999999987766643
Q ss_pred CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC-cceeEeec-CC-CCeeEEEEcC---
Q 009614 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQG-HS-SEVLDLSWSK--- 398 (531)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-h~-~~I~~l~~sp--- 398 (531)
....... . .....++. . ...+....++.++.++.......- ..+....+ +. .....+..+|
T Consensus 189 ~~~~~~~---~-~~~sP~v~---~------~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 189 DVPSLTL---R-GESAPATA---F------GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred CCCcccc---c-CCCCCEEE---C------CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 2110000 0 00000000 0 001112222333322222111000 00000000 00 0000111112
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCC-CceEEE
Q 009614 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR-EIVSAV 476 (531)
Q Consensus 399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~-~~v~~v 476 (531)
++.++.++.++.+..+|..+++.+........ ..+.. .+..++.++.+|.|..+|..+++.+- ..... ....+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 44777788899999999999988766543221 12222 45677788899999999999987652 21111 111222
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 477 ~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
.. .+.+|++++.+|.+++.|..+|+++.+.++
T Consensus 332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 332 VL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 22 245788899999999999999999887765
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.71 E-value=0.00033 Score=75.17 Aligned_cols=144 Identities=17% Similarity=0.244 Sum_probs=103.7
Q ss_pred eeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC---------CCcEEEEE
Q 009614 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRVWK 312 (531)
Q Consensus 242 ~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---------Dg~I~iWd 312 (531)
-...+++++.+|...|+|.+.|.+ .+...+++.+|++.|.++.. .|+.|++||. |.-|+|||
T Consensus 182 imR~Nnr~lf~G~t~G~V~LrD~~-------s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 182 IMRYNNRNLFCGDTRGTVFLRDPN-------SFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred EEEecCcEEEeecccceEEeecCC-------cCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence 455688999999999999999987 55566789999999986655 6899999985 45577888
Q ss_pred cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (531)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 392 (531)
++..+.+..+..+ .+ ..
T Consensus 253 LRmmral~PI~~~--------------------------------------------------------------~~-P~ 269 (1118)
T KOG1275|consen 253 LRMMRALSPIQFP--------------------------------------------------------------YG-PQ 269 (1118)
T ss_pred hhhhhccCCcccc--------------------------------------------------------------cC-ch
Confidence 7666543332211 11 12
Q ss_pred EEEEcCCC--eEEEEeCCCcEEEEEC---CCCe-EEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614 393 DLSWSKNG--FLLSSSADKTVRLWQV---GIDR-CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (531)
Q Consensus 393 ~l~~sp~~--~l~s~s~Dg~V~lwdl---~~~~-~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~ 458 (531)
-+.|+|.- .++.++..|...+-|. .... -+..+. ....+.++++++ +++.++.|..+|.|.+|--
T Consensus 270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcEeeecC
Confidence 34566654 7788888888888883 2221 112222 445599999999 9999999999999999973
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.68 E-value=0.014 Score=57.42 Aligned_cols=245 Identities=16% Similarity=0.178 Sum_probs=134.5
Q ss_pred eeeeCCCCeEEe----------eecCCeEEEEeCCCCcccccccccceEEcc-cC----CCEEEEEEccCCCEEEEEeC-
Q 009614 241 ATLKPGDHELTL----------GQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HE----GSILTMKFSLDGQYLASGGE- 304 (531)
Q Consensus 241 ~~fspdg~~las----------gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~-H~----~~I~~l~fspdg~~Lasgs~- 304 (531)
+.++|+++.+.+ |-..-.|.+||..+...... -++.+ |. ...+.+.++.||++++....
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E-----I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE-----IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE-----EEETTS-B--BS--GGGEEE-TTSSEEEEEEES
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce-----EecCCcchheecccccceEEccCCcEEEEEccC
Confidence 678999998875 44566799999986532211 01111 11 12234688899998877543
Q ss_pred -CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614 305 -DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (531)
Q Consensus 305 -Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (531)
--.|.|-|+...+.+.++.. +.|....+.....+..+..++.. ..+.++..--. ..+....
T Consensus 116 Pa~SVtVVDl~~~kvv~ei~~----PGC~~iyP~~~~~F~~lC~DGsl-------------~~v~Ld~~Gk~-~~~~t~~ 177 (342)
T PF06433_consen 116 PATSVTVVDLAAKKVVGEIDT----PGCWLIYPSGNRGFSMLCGDGSL-------------LTVTLDADGKE-AQKSTKV 177 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEG----TSEEEEEEEETTEEEEEETTSCE-------------EEEEETSTSSE-EEEEEEE
T ss_pred CCCeEEEEECCCCceeeeecC----CCEEEEEecCCCceEEEecCCce-------------EEEEECCCCCE-eEeeccc
Confidence 45788999988888777765 34555544443333333322221 11111110000 0001111
Q ss_pred eecCCCCee-EEEEcCCC-eEEEEeCCCcEEEEECCCCeEE--EEee-----------cCCceEEEEEeeCCCCEEEEEe
Q 009614 384 FQGHSSEVL-DLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVFS-----------HNNYVTSVAFNPVDDNYFISGS 448 (531)
Q Consensus 384 ~~~h~~~I~-~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l--~~~~-----------h~~~V~sv~fsp~d~~~l~sgs 448 (531)
|..-..++. .-++...+ .++--+..|.|+--|+...... ..+. -++.-.-+++++ ..+.|++.-
T Consensus 178 F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLM 256 (342)
T PF06433_consen 178 FDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA-ASGRLYVLM 256 (342)
T ss_dssp SSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-TTTEEEEEE
T ss_pred cCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-ccCeEEEEe
Confidence 222222222 22344443 6666788888888888765432 2221 112234477887 444444322
Q ss_pred C---CC-------eEEEEeCCCCeEEEecCCCCceEEEEEccCCC-EEEEE-eCCCcEEEEeCCCCeEEEEee
Q 009614 449 I---DG-------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVG-TMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 449 ~---Dg-------~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-s~dg~I~iwd~~~~~l~~~~~ 509 (531)
. ++ .|.++|+.+++.+........+.+|..+.|.+ +|++. ..++.+.+||..+|+++....
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 1 11 48888999999987666566788999998775 55544 457899999999999988765
No 323
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.67 E-value=0.023 Score=54.19 Aligned_cols=206 Identities=14% Similarity=0.147 Sum_probs=111.4
Q ss_pred eeeeccccceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614 232 ARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (531)
Q Consensus 232 ~~~~~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 310 (531)
.+..+.++.++|.|+.. ++++....+.|...+... . .+. ...+.+ .+-.-+|++..++.++++--.++.+.+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~-vlr----~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-K-VLR----RIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEE----EEE-SS--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-C-EEE----EEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 33444566799999755 667777888888777642 2 111 112333 356788899888877776656888988
Q ss_pred EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (531)
Q Consensus 311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 390 (531)
.++........... ...+ .+.....++..
T Consensus 91 ~~~~~~~~~~~~~~-----------------------------------------~~~~----------~l~~~~~~N~G 119 (248)
T PF06977_consen 91 FTIDDDTTSLDRAD-----------------------------------------VQKI----------SLGFPNKGNKG 119 (248)
T ss_dssp EEE----TT--EEE-----------------------------------------EEEE----------E---S---SS-
T ss_pred EEEeccccccchhh-----------------------------------------ceEE----------ecccccCCCcc
Confidence 88744321100000 0000 00111235667
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCC---CeEEEEee---------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~---~~~l~~~~---------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd 457 (531)
+-.|+|.|.+ .|+.+-...-.+||.+.. ...+.... ....+.+++++|..+.+++.......|.++|
T Consensus 120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp -EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred eEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 8999999986 666777777777777654 22222221 3346789999998888888888899999999
Q ss_pred CCCCeEEEecCCC----------CceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614 458 VRRCQVVDYTDIR----------EIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (531)
Q Consensus 458 ~~~~~~~~~~~~~----------~~v~~v~~spdg~~l~sgs~dg~I~iw 497 (531)
.+++++...... ...-.|+|.++|++.++. .-+..++|
T Consensus 200 -~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 200 -RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred -CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 566665422211 246789999999755544 55544443
No 324
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.62 E-value=0.014 Score=59.87 Aligned_cols=152 Identities=20% Similarity=0.228 Sum_probs=83.8
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc-ceecCCCCCeeEEE-eecCCcceeeeeccccccccccccccCCC
Q 009614 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYF-TINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (531)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (531)
.|+.|.|+++..-|+.|...|.|.||.....+... .............+ ..+....+..+.. ....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~---------r~~~--- 70 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISD---------RAPP--- 70 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GG---------G--T---
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehh---------hCCc---
Confidence 58999999998899999999999999987655332 00000000000000 0000111110000 0000
Q ss_pred ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee---------cCCceEEE
Q 009614 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSV 434 (531)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~---------h~~~V~sv 434 (531)
..+..-.|...++...++|++++.+.-|+++.|..+|.+.|.|++....+..-. ....|+++
T Consensus 71 ---------~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 71 ---------SLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp ---------T-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred ---------ccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 000001345556667899999999988899999999999999999888776632 23468888
Q ss_pred EEeeC----CC---CEEEEEeCCCeEEEEeC
Q 009614 435 AFNPV----DD---NYFISGSIDGKVRIWEV 458 (531)
Q Consensus 435 ~fsp~----d~---~~l~sgs~Dg~I~Iwd~ 458 (531)
.|... |+ -.+++|...|.+.+|.+
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKI 172 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence 88631 22 36778888888888865
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00039 Score=68.17 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=73.0
Q ss_pred eeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614 381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (531)
Q Consensus 381 ~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~ 458 (531)
...+.+|...|.+|+++|.. ++..++.+.+|+|.|+++..++..+.....+++++|.-++.++|++|-..|.|.|||+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 33566788899999999976 7899999999999999999999999866999999999977789999999999999999
Q ss_pred CCCe
Q 009614 459 RRCQ 462 (531)
Q Consensus 459 ~~~~ 462 (531)
+..+
T Consensus 266 R~~~ 269 (463)
T KOG1645|consen 266 RQPE 269 (463)
T ss_pred cCCC
Confidence 9754
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.0043 Score=65.24 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=59.1
Q ss_pred ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 315 (531)
...++++..++|+|+..|.|.|+.+...... ...+....-+.|...|++++|++++..|++|..-|+|.+-.+.+
T Consensus 81 ~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~-~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 81 VRSVSSVEYLVAAGTASGRVSVFQLNKELPR-DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEEecchhHhhhhhcCCceEEeehhhccCCC-cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 3578999999999999999999998863321 12222222234788999999999999999999999999988876
No 327
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.57 E-value=0.012 Score=57.22 Aligned_cols=196 Identities=14% Similarity=0.195 Sum_probs=106.2
Q ss_pred eeeeCCCCeEEee-----ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-------CC--
Q 009614 241 ATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-------DG-- 306 (531)
Q Consensus 241 ~~fspdg~~lasg-----s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-------Dg-- 306 (531)
..|++||++|.+. ...|.|-|||... .+....++..|.-.-..|.+.|||+.|+.+-. .|
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~------~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~ 129 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR------GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRA 129 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcC------CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCce
Confidence 5899999999874 4468999999983 23344466666666677889999988877631 12
Q ss_pred ---------cEEEEEcccCccccceecCC--CCCeeEEEeecCCcceee-eeccccccccccccccCCCceEEEeCCcc-
Q 009614 307 ---------TVRVWKVIEHERLDGFDVQD--TDPSCLYFTINHLSQLIP-IDVDKEKIDKTKSLRKSSDLTCVVLPPKV- 373 (531)
Q Consensus 307 ---------~I~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 373 (531)
.+.+.|..+|+.+....... ...+.-.+.......+.. ..+....... ...+.++....
T Consensus 130 kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~--------~PLva~~~~g~~ 201 (305)
T PF07433_consen 130 KLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA--------PPLVALHRRGGA 201 (305)
T ss_pred ecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc--------CCeEEEEcCCCc
Confidence 23334445555544433311 112222222222222221 1121111100 01111111111
Q ss_pred ccccCcceeEeecCCCCeeEEEEcCCC-eE-EEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC
Q 009614 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451 (531)
Q Consensus 374 ~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l-~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg 451 (531)
......+......-.+.|-+|++++++ .+ +|+=.-+.+.+||..++..+....-.+ +..++-.+ ++ ++++.+ .|
T Consensus 202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~-~~-f~~ssG-~G 277 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD-ACGVAPTD-DG-FLVSSG-QG 277 (305)
T ss_pred ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc-eeeeeecC-Cc-eEEeCC-Cc
Confidence 111111111123345678999999998 44 555577889999999999987765333 45566555 33 555544 45
Q ss_pred eEE
Q 009614 452 KVR 454 (531)
Q Consensus 452 ~I~ 454 (531)
.+.
T Consensus 278 ~~~ 280 (305)
T PF07433_consen 278 QLI 280 (305)
T ss_pred cEE
Confidence 433
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0005 Score=68.31 Aligned_cols=208 Identities=16% Similarity=0.164 Sum_probs=126.7
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC---ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccc
Q 009614 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (531)
Q Consensus 283 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (531)
|...|+.+.-. -.+++.+++.||.++.|.-..- +.+..+..+...+..+..+. ......+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~----------------dg~L~~S 70 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY----------------DGWLFRS 70 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc----------------cceeEee
Confidence 77778876554 4569999999999999975331 11111111111111111110 1111122
Q ss_pred cC-CCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---eEE-EEeCCCcEEEEECCCCeEEE-Eee--cCCce
Q 009614 360 KS-SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLL-SSSADKTVRLWQVGIDRCLR-VFS--HNNYV 431 (531)
Q Consensus 360 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~---~l~-s~s~Dg~V~lwdl~~~~~l~-~~~--h~~~V 431 (531)
.. .+....+++...++...- ..+.--.+.+.. ..+|.. .++ +.-.++.+.++|-....+.. .+. |..+|
T Consensus 71 v~d~Dhs~KvfDvEn~Dminm--iKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV 147 (558)
T KOG0882|consen 71 VEDPDHSVKVFDVENFDMINM--IKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPV 147 (558)
T ss_pred ccCcccceeEEEeeccchhhh--cccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCce
Confidence 12 244455555444433211 111111222222 223332 333 33467889999987655433 332 99999
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEeCCC------CeE----------EEecCCCCceEEEEEccCCCEEEEEeCCCcEE
Q 009614 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRR------CQV----------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCR 495 (531)
Q Consensus 432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~------~~~----------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~ 495 (531)
.++.++| -+..+++....|.|.-|.... .++ +.+.......+++.|+|+|..+.+-+.|..|+
T Consensus 148 ~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR 226 (558)
T KOG0882|consen 148 KKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVR 226 (558)
T ss_pred EEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEE
Confidence 9999999 888999998899999999873 111 12334456789999999999999999999999
Q ss_pred EEeCCCCeEEEEeeee
Q 009614 496 FYDIKDNQLYQQNQIC 511 (531)
Q Consensus 496 iwd~~~~~l~~~~~~~ 511 (531)
++++++|++++.+.-.
T Consensus 227 ~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 227 GFVFKTGKLVQEIDEV 242 (558)
T ss_pred EEEeccchhhhhhhcc
Confidence 9999999998877543
No 329
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.54 E-value=0.053 Score=52.90 Aligned_cols=229 Identities=11% Similarity=0.078 Sum_probs=121.8
Q ss_pred eCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccccee
Q 009614 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (531)
Q Consensus 244 spdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 323 (531)
...++.|+.|+.+| +.+++....... . -..+...|..|...++-+.|++-+ |+.+.++++..........
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~------~--~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKP------T--RILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccc------e--eEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence 45678899999988 889888221111 1 111333499999999877766654 5999999987655433211
Q ss_pred ------------cCCCCCeeEEEe--ec-CCcceeeeeccccccccccccccCCCceEEEeCCccccccC-cceeEeecC
Q 009614 324 ------------VQDTDPSCLYFT--IN-HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGH 387 (531)
Q Consensus 324 ------------~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h 387 (531)
.......+..+. .. ......+ +.......++.|.... ... +..+++. -
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-------------va~kk~i~i~~~~~~~--~~f~~~~ke~~-l 137 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-------------VAVKKKILIYEWNDPR--NSFSKLLKEIS-L 137 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEE-------------EEECCEEEEEEEECCc--ccccceeEEEE-c
Confidence 001111122222 00 0000111 1111112222332211 111 2334433 3
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeec-------------CCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-------------NNYVTSVAFNPVDDNYFISGSIDGKVR 454 (531)
Q Consensus 388 ~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h-------------~~~V~sv~fsp~d~~~l~sgs~Dg~I~ 454 (531)
...+..++|.++ .++.|.. +...+.|+.++.....+.. ..++..+... ++.+|++- |..-.
T Consensus 138 p~~~~~i~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~ 211 (275)
T PF00780_consen 138 PDPPSSIAFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGV 211 (275)
T ss_pred CCCcEEEEEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEE
Confidence 478899999944 6666654 4478899997776655531 1233333433 34555542 33333
Q ss_pred EEeCCCC----eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 455 IWEVRRC----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 455 Iwd~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
..|.... ..+.|. ..+.++++. ..+|++.+. +.|.||++.++++++.+..
T Consensus 212 fv~~~G~~~r~~~i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 212 FVNKNGEPSRKSTIQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCCCCcCcccEEEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 3344332 122333 345556663 357777665 5599999999999988763
No 330
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00047 Score=71.38 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=71.0
Q ss_pred cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceE-EEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS-AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~-~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~ 505 (531)
-...+.-+.|+| .-.+||.+..+|.|-+..+.-.++..+.-+...++ ++||.|||+.||+|-.||+|++.|+.++..+
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 345678899999 88999999999999999999666666665777777 9999999999999999999999999999988
Q ss_pred EEe
Q 009614 506 QQN 508 (531)
Q Consensus 506 ~~~ 508 (531)
+..
T Consensus 98 ~~~ 100 (665)
T KOG4640|consen 98 VSF 100 (665)
T ss_pred ecc
Confidence 774
No 331
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.44 E-value=0.012 Score=48.03 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=71.4
Q ss_pred eeEEEEcC---CC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614 391 VLDLSWSK---NG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (531)
Q Consensus 391 I~~l~~sp---~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~ 465 (531)
|++|++.. +| .|+.|+.|..||+|+ ....+..+.-...|++++-.. ...|+.+-.+|+|-+|+-... +..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence 45555543 44 899999999999996 447788888888899998876 478999999999999987432 223
Q ss_pred ecCCCCceEEEEEcc-CC---CEEEEEeCCCcEE
Q 009614 466 YTDIREIVSAVCYCP-DG---KGGIVGTMTGNCR 495 (531)
Q Consensus 466 ~~~~~~~v~~v~~sp-dg---~~l~sgs~dg~I~ 495 (531)
.. .+..++++++.. ++ .-|++|-.+|.|-
T Consensus 77 iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33 233356665543 32 3689999999874
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.42 E-value=0.0056 Score=63.61 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=60.3
Q ss_pred CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC
Q 009614 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI 469 (531)
Q Consensus 390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~ 469 (531)
.-..++|.+.+.+++-....+|.|+.--+....+.+..+..+..|-. |.+|+..+.+ .|.+||+.+++++.....
T Consensus 70 ~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 70 SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDV 144 (443)
T ss_dssp E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS
T ss_pred ceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEec
Confidence 34567888877777777788899963323333334443334444432 6677766554 899999999999876665
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
.. |..|.|+++|.+++..+.+ .+.|++.+..
T Consensus 145 ~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 145 SA-VKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -E--EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred CC-CcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 54 8999999999999888855 5777765433
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.00028 Score=74.95 Aligned_cols=107 Identities=12% Similarity=0.160 Sum_probs=88.6
Q ss_pred eEEEEcCCC-eEEEEe----CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 009614 392 LDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD- 465 (531)
Q Consensus 392 ~~l~~sp~~-~l~s~s----~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~- 465 (531)
+-.+|+|.. +++.++ ..|.|-|| ..+|++.+....+-.+++++|+| ..-.|+.|-.-|.+.+|...+.+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence 345799988 776665 45788888 46777766666666788999999 77788899899999999999887764
Q ss_pred ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
...|..+|..+.|+|+|..++++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 56788999999999999999999999999999875
No 334
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.37 E-value=0.05 Score=56.39 Aligned_cols=69 Identities=14% Similarity=0.001 Sum_probs=47.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 440 d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
+....+....++.+.+.+-...+. ....+++..++.||+|++||.-..+|.+.+.+..-.+.+.++...
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 445555555556666444332211 223468999999999999999999999999987766666555543
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.36 E-value=0.0094 Score=63.27 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=78.2
Q ss_pred cCCC-eEEEEeCCCcEEEEECCC-----CeEEEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCCCeE------
Q 009614 397 SKNG-FLLSSSADKTVRLWQVGI-----DRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQV------ 463 (531)
Q Consensus 397 sp~~-~l~s~s~Dg~V~lwdl~~-----~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~~~~------ 463 (531)
.++| +... .++.|.+.|..+ ...+..+.-......|.++| |++++++++ .+.+|.|.|+.+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 3456 3333 367899999998 46677777788889999999 888877655 589999999988552
Q ss_pred ------EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614 464 ------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 464 ------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~ 501 (531)
+............+|.++|+...+-..|..|..||+..
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33333344566789999999888899999999999986
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.36 E-value=7e-05 Score=77.28 Aligned_cols=141 Identities=14% Similarity=0.192 Sum_probs=92.9
Q ss_pred ecCCCCeeEEEEcCCC--eEEEEe----CCCcEEEEECCCC--eEEEEe----ecCCceEEEEEeeCCCCEEEEEeCCCe
Q 009614 385 QGHSSEVLDLSWSKNG--FLLSSS----ADKTVRLWQVGID--RCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGK 452 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~--~l~s~s----~Dg~V~lwdl~~~--~~l~~~----~h~~~V~sv~fsp~d~~~l~sgs~Dg~ 452 (531)
.+|....++++|++-. .|++|- .|..+.|||+.++ .+.... .......+++|-. +.+++++|.....
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~ 177 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRS 177 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccch
Confidence 4567788999999864 666663 4567999999876 222111 1334556899986 8899999999999
Q ss_pred EEEEeCCCCeEEEecCCCCceEEEEEcc-CCCEEEEEeCCCcEEEEeCC-C-CeEEEEeeeeecccccCCCceeeeEEEe
Q 009614 453 VRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIK-D-NQLYQQNQICLQGKKKLPGKRITGFQVV 529 (531)
Q Consensus 453 I~Iwd~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~-~-~~l~~~~~~~~~~~kk~~~~~It~l~f~ 529 (531)
+.++|++........-.+..+..+...| .+.|+++-. ||.|.+||.. . ..+++.+. . .+++..++++.|+++
T Consensus 178 ~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~---~-~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL---R-NENKKPKQLFALAYC 252 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHh---h-CCCCcccceeeEEec
Confidence 9999999543322222333556677778 667776665 9999999952 1 12222211 1 122333589999999
Q ss_pred eC
Q 009614 530 KI 531 (531)
Q Consensus 530 p~ 531 (531)
|.
T Consensus 253 Pt 254 (783)
T KOG1008|consen 253 PT 254 (783)
T ss_pred cC
Confidence 84
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.33 E-value=0.015 Score=64.95 Aligned_cols=209 Identities=16% Similarity=0.194 Sum_probs=112.7
Q ss_pred eeccccceeeeCCCCeEEeeecCCeEEEEeCCCC----cc------------cccccccceEEcccC-------------
Q 009614 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQ----SR------------ELSSLYTGQEFLAHE------------- 284 (531)
Q Consensus 234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~----~~------------~~~~~~~~~~l~~H~------------- 284 (531)
..+.|.+++|+||++.++..+..+++.+-...-. .. ..........|+|..
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 3467778999999999999988888877544100 00 000001011122111
Q ss_pred --------CCEEEEEEccCCCEEEEEe----CC-CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccc
Q 009614 285 --------GSILTMKFSLDGQYLASGG----ED-GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK 351 (531)
Q Consensus 285 --------~~I~~l~fspdg~~Lasgs----~D-g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (531)
+.=+.|.|--||+++|+.. .+ +.|+|||.. |.....-........++.|.|.+ ..+.++.
T Consensus 188 ~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq----- 260 (1265)
T KOG1920|consen 188 ALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQ----- 260 (1265)
T ss_pred cccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEeeee-----
Confidence 1123589999999998842 23 799999976 44332222233334455555522 2222221
Q ss_pred cccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEE---EeCCCcEEEEECCCCeEEE--Ee
Q 009614 352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS---SSADKTVRLWQVGIDRCLR--VF 425 (531)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s---~s~Dg~V~lwdl~~~~~l~--~~ 425 (531)
..+.+..++++..+..... .....+......|..++|+.++ .|+. ......|++|-+.+..... .+
T Consensus 261 -------~~~sd~~IvffErNGL~hg-~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l 332 (1265)
T KOG1920|consen 261 -------CKTSDSDIVFFERNGLRHG-EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQEL 332 (1265)
T ss_pred -------ecCCCCcEEEEecCCcccc-ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEE
Confidence 2233335666554432211 1111122233448999999998 6655 3444459999987754322 22
Q ss_pred ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (531)
Q Consensus 426 ~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~ 458 (531)
..+.... +.|+|.....+..-..+|...+++.
T Consensus 333 ~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 333 QFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ecccccc-ccccCCCceeEEEEecCCcEEEEEE
Confidence 2222222 7888866666666556666666553
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.32 E-value=0.057 Score=50.53 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=50.4
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEE-EEEEccCCCEEEEEeCCCcEEEEEcccCccccceec
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL-TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~-~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 324 (531)
-|++++.|...|.+++.+.+++.+-.. +..- +.|. .....+++.++..|+.|++.+..|..+..++.+.+.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~-------f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWN-------FVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheee-------eeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 466799999999999999987654321 1111 1121 123456899999999999999999988887666443
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.30 E-value=0.00055 Score=43.33 Aligned_cols=35 Identities=40% Similarity=0.904 Sum_probs=31.7
Q ss_pred eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (531)
Q Consensus 278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 312 (531)
..+.+|...|+++.|++++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35667899999999999999999999999999996
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.00087 Score=70.29 Aligned_cols=110 Identities=12% Similarity=0.159 Sum_probs=85.1
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE---
Q 009614 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--- 464 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--- 464 (531)
|.--++...+ +++.|+.-|.|.+|+-..++....-. ....+..+..++ +..++|+|+..|.|.|+.+.....-
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcce
Confidence 3333444455 99999999999999987776554433 345566677888 8889999999999999998764321
Q ss_pred --E--ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614 465 --D--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 465 --~--~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~ 501 (531)
. -..|...|++++|++|+..+++|...|+|..-.+.+
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 223678899999999999999999999999888876
No 341
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0015 Score=67.71 Aligned_cols=91 Identities=14% Similarity=0.269 Sum_probs=76.9
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceE-EEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~-sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~ 464 (531)
...|.-+.|+|.- ++|.+..+|.|.+..+. -+.+.++. ++..++ +++|.| ||++||.|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3467789999987 99999999999999887 77778887 777777 999999 9999999999999999999998877
Q ss_pred Ee--cCCCCceEEEEEcc
Q 009614 465 DY--TDIREIVSAVCYCP 480 (531)
Q Consensus 465 ~~--~~~~~~v~~v~~sp 480 (531)
.- ......|.++-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 53 55566777777763
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.22 E-value=0.03 Score=45.75 Aligned_cols=66 Identities=27% Similarity=0.337 Sum_probs=47.6
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCC---CEEEEEeCCCeEEE
Q 009614 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD---NYFISGSIDGKVRI 455 (531)
Q Consensus 388 ~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~---~~l~sgs~Dg~I~I 455 (531)
...|+.|.-...+.++.+-.+|+|-+|+- .+.+...+.+..++++++...++ .-|++|-.+|+|-+
T Consensus 42 ~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 42 TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 45677777777779999999999999975 33344445566688888765332 26899999998754
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.16 E-value=0.096 Score=54.13 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=64.2
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEEEeec--CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-CCCceEE-
Q 009614 400 GFLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IREIVSA- 475 (531)
Q Consensus 400 ~~l~s~s~Dg~V~lwdl~~~~~l~~~~h--~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~-~~~~v~~- 475 (531)
+.++.++.++.|..+|..+++.+..... .....+... .+.+++.++.||.|.+.|..+++++.... ....+.+
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~ 371 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSE 371 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeC
Confidence 4788888999999999999987654431 111222222 24678888999999999999998874322 2222221
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeC
Q 009614 476 VCYCPDGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 476 v~~spdg~~l~sgs~dg~I~iwd~ 499 (531)
..+ .+..|++++.||.|+.+++
T Consensus 372 P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 PVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEE--ECCEEEEEeCCceEEEEeC
Confidence 122 3457889999999888764
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.14 E-value=0.025 Score=60.15 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=69.6
Q ss_pred CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEe--------------------------------------
Q 009614 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-------------------------------------- 448 (531)
Q Consensus 407 ~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-------------------------------------- 448 (531)
..+.+.+.|..+.+....+.-.....-++++| ++.++++.+
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 44667777877776666655444445667777 666665554
Q ss_pred --CCCeEEEEeCCC-----CeEEEecCCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCCCCe
Q 009614 449 --IDGKVRIWEVRR-----CQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQ 503 (531)
Q Consensus 449 --~Dg~I~Iwd~~~-----~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~~ 503 (531)
.+++|.+.|..+ .+++.+.........+.++|||+++++++. +++|.|+|+.+.+
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 235688888887 456667777778899999999999877665 8999999998755
No 345
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.028 Score=53.32 Aligned_cols=207 Identities=17% Similarity=0.205 Sum_probs=117.4
Q ss_pred eeeeCCCCeEEeeec-----CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE-Ecc
Q 009614 241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW-KVI 314 (531)
Q Consensus 241 ~~fspdg~~lasgs~-----dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW-d~~ 314 (531)
-.|||||.+|.+.-. -|.|-|||....- ...-++..|.-.-..|.|.+||+.|+.+. |-|..- +..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~f------qrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfg 190 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGF------QRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFG 190 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEeccccc------ceecccccCCcCcceeEEecCCcEEEEeC--CceecccccC
Confidence 479999999977433 3789999988432 23345777877778899999999988763 445544 221
Q ss_pred cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (531)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 394 (531)
.-+ ++.....++.+.+ +....++.++....-..+.-.|..+
T Consensus 191 R~~----lNldsMePSlvll-----------------------------------d~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 191 RTE----LNLDSMEPSLVLL-----------------------------------DAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ccc----cchhhcCccEEEE-----------------------------------eccccchhhhccCchhhhhcceeee
Confidence 111 1111111111111 1111111111111111345567778
Q ss_pred EEcCCCeEEEEeC------CCcEEEEECCCCeEEEEee--------cCCceEEEEEeeCCCCEEEE-EeCCCeEEEEeCC
Q 009614 395 SWSKNGFLLSSSA------DKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVR 459 (531)
Q Consensus 395 ~~sp~~~l~s~s~------Dg~V~lwdl~~~~~l~~~~--------h~~~V~sv~fsp~d~~~l~s-gs~Dg~I~Iwd~~ 459 (531)
+..++|.++.++. |---.+=-...++.+..+. ..++|-+|+.+- +..+++. .-..+...|||..
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcC
Confidence 8888885555542 1111222223445554443 457899999997 4445544 4455678899999
Q ss_pred CCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614 460 RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 460 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 498 (531)
++.++......+. .-..+...-+++.+.+|.|.+|.
T Consensus 311 tG~vv~~a~l~da---aGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TGAVVSEAALPDA---AGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCcEEeccccccc---ccceeccCceEEecCCceEEecc
Confidence 9999864433321 11223445677888889998884
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.026 Score=58.48 Aligned_cols=110 Identities=21% Similarity=0.279 Sum_probs=70.9
Q ss_pred eEEEEcCCC--eEEEEeCCCc--EEEEECCCCeEEEEeecC-CceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCCCeE
Q 009614 392 LDLSWSKNG--FLLSSSADKT--VRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQV 463 (531)
Q Consensus 392 ~~l~~sp~~--~l~s~s~Dg~--V~lwdl~~~~~l~~~~h~-~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~~~~ 463 (531)
...+|+|+| ++++...|+. |.+.|+.+++..+ +.+. +.-+.=.|+| +|++++-.+. .| .|.++++..+.+
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce
Confidence 345799999 5556666766 5666777777444 4433 3334567999 8887776554 44 466777777765
Q ss_pred EEecCCCCceEEEEEccCCCEEEEEeCC-Cc--EEEEeCCCCe
Q 009614 464 VDYTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKDNQ 503 (531)
Q Consensus 464 ~~~~~~~~~v~~v~~spdg~~l~sgs~d-g~--I~iwd~~~~~ 503 (531)
..+......-..-.|+|||++|+..+.. |. |.++|+.++.
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 5443333333377899999999887753 44 6777776555
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.02 Score=61.78 Aligned_cols=102 Identities=21% Similarity=0.370 Sum_probs=73.2
Q ss_pred eEEEEeCCC-----cEEEEECCC------CeEE---EEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC-
Q 009614 401 FLLSSSADK-----TVRLWQVGI------DRCL---RVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR- 460 (531)
Q Consensus 401 ~l~s~s~Dg-----~V~lwdl~~------~~~l---~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~- 460 (531)
.|++-+.|+ .|++|++.. .+++ +.+. .+.++.+++.+. +-..+|+|-.+|.|..+.-.-
T Consensus 79 ~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 79 FLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred EEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcch
Confidence 777766654 499999863 2344 3333 246788999998 889999999999999885321
Q ss_pred ---C-eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 461 ---C-QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 461 ---~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
+ +.........+||.+++..+++.++.+.....|.+|.+....
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 1 222345567899999999999885555556789999998544
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.01 E-value=0.16 Score=50.95 Aligned_cols=175 Identities=18% Similarity=0.235 Sum_probs=102.0
Q ss_pred CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEee
Q 009614 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI 336 (531)
Q Consensus 257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 336 (531)
|+|.++++.+.......+.... -....++|++|+-- +|. |+.|. .+.|.+|++...+.+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~-~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~--------------- 122 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH-STEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLK--------------- 122 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE-EEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEE---------------
T ss_pred cEEEEEEEEcccccceEEEEEE-EEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchh---------------
Confidence 9999999987411111111111 12347889998876 444 44443 47899999876651100
Q ss_pred cCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEEC
Q 009614 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416 (531)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl 416 (531)
...+. ....+.++....+ +++.|...+.|.++..
T Consensus 123 --------------------------------------------~~~~~-~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 123 --------------------------------------------KAFYD-SPFYITSLSVFKN-YILVGDAMKSVSLLRY 156 (321)
T ss_dssp --------------------------------------------EEEE--BSSSEEEEEEETT-EEEEEESSSSEEEEEE
T ss_pred --------------------------------------------hheec-ceEEEEEEecccc-EEEEEEcccCEEEEEE
Confidence 11111 2225667766644 8888888888888755
Q ss_pred CC-CeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC-------C--eEE--EecCCCCceEEE---EE
Q 009614 417 GI-DRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-------C--QVV--DYTDIREIVSAV---CY 478 (531)
Q Consensus 417 ~~-~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~-------~--~~~--~~~~~~~~v~~v---~~ 478 (531)
+. ...+..+. ....++++.|-+ +++.++.+..+|.|.++.... + ++. ........|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 43 33344443 456788999987 557999999999999998763 2 222 344456678877 55
Q ss_pred cc--CCC------EEEEEeCCCcEEEE
Q 009614 479 CP--DGK------GGIVGTMTGNCRFY 497 (531)
Q Consensus 479 sp--dg~------~l~sgs~dg~I~iw 497 (531)
.| .+. .++.++.+|.|...
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 55 222 48888899998743
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.98 E-value=0.0026 Score=40.02 Aligned_cols=37 Identities=43% Similarity=0.842 Sum_probs=31.3
Q ss_pred eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (531)
Q Consensus 420 ~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd 457 (531)
+++..+. |...|++++|+| .+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 3445554 788999999999 779999999999999996
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.93 E-value=0.35 Score=49.13 Aligned_cols=249 Identities=11% Similarity=0.115 Sum_probs=125.3
Q ss_pred eCCCCeEEee---------ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614 244 KPGDHELTLG---------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (531)
Q Consensus 244 spdg~~lasg---------s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 314 (531)
|||+++++.. +..+.+.|+|+.++.... +......+....|||+|+.+|-.. ++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------CcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 5777777663 234678889988644321 111256788999999999998875 5689999876
Q ss_pred cCccccceecC-----------------CCCCeeEEEeecCCcceeeeecccccccc-------------------cccc
Q 009614 315 EHERLDGFDVQ-----------------DTDPSCLYFTINHLSQLIPIDVDKEKIDK-------------------TKSL 358 (531)
Q Consensus 315 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 358 (531)
++...+--... -.....+.|+++....++ +..+...... .+..
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~-~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk 150 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF-LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK 150 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE-EEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEE-EEECCcCCceEEeeccCCccccCCcccccccCC
Confidence 66432211111 112344555555543222 2222111111 1112
Q ss_pred ccCCCce--EEEeCCccccccCcceeE---eecCCCCeeEEEEcCCC-eEEEEe--CC---CcEEEEECCCCeEEEEee-
Q 009614 359 RKSSDLT--CVVLPPKVFRLLEKPLHE---FQGHSSEVLDLSWSKNG-FLLSSS--AD---KTVRLWQVGIDRCLRVFS- 426 (531)
Q Consensus 359 ~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~h~~~I~~l~~sp~~-~l~s~s--~D---g~V~lwdl~~~~~l~~~~- 426 (531)
.+..+.. +.+++....... .+.. +..-...+..+.|.+++ .|+..- .+ -.+.+.|..++.+...+.
T Consensus 151 ~G~~np~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 151 AGDPNPRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp TTS---EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CCCcCCceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 2222222 222333222111 1111 12234567889999988 344433 32 236677887765544432
Q ss_pred -cCCce---EEEEEe-eCCCCEEEEEeCCCe--EEEEeCCCCeEEEecCCCCceEE-EEEccCCCEEE-EEeCCC--c--
Q 009614 427 -HNNYV---TSVAFN-PVDDNYFISGSIDGK--VRIWEVRRCQVVDYTDIREIVSA-VCYCPDGKGGI-VGTMTG--N-- 493 (531)
Q Consensus 427 -h~~~V---~sv~fs-p~d~~~l~sgs~Dg~--I~Iwd~~~~~~~~~~~~~~~v~~-v~~spdg~~l~-sgs~dg--~-- 493 (531)
....| ..+.|. +.+..+|.....||. |.+++...+....+....-.|+. +.|.++++.|. +|..++ .
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 33332 345554 635556666667774 56667777776666666666754 67888877665 444422 3
Q ss_pred EEEEeCC-CCeE
Q 009614 494 CRFYDIK-DNQL 504 (531)
Q Consensus 494 I~iwd~~-~~~l 504 (531)
++.-++. .+.+
T Consensus 309 lY~v~~~~~~~~ 320 (353)
T PF00930_consen 309 LYRVSLDSGGEP 320 (353)
T ss_dssp EEEEETTETTEE
T ss_pred EEEEEeCCCCCe
Confidence 4444555 4443
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.52 Score=48.43 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=131.7
Q ss_pred ceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEccc
Q 009614 240 SATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIE 315 (531)
Q Consensus 240 s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~ 315 (531)
.+++++.+..+ +....++.|.+.|........ ....+. .-..++++++++.+..+.. ++++.+.|..+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~------~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t 149 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG------SIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT 149 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceee------Eeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence 46888888854 445556899999954322111 011222 5668899999987777655 57777777666
Q ss_pred CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 395 (531)
++...... .+ ..+ ..++
T Consensus 150 ~~~~~~~~-------------------------------------------------------------vG-~~P-~~~a 166 (381)
T COG3391 150 NKVTATIP-------------------------------------------------------------VG-NTP-TGVA 166 (381)
T ss_pred CeEEEEEe-------------------------------------------------------------cC-CCc-ceEE
Confidence 55332211 11 122 6788
Q ss_pred EcCCC-eEE-EEeCCCcEEEEECCCCeEEE-----EeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCCCeEEE
Q 009614 396 WSKNG-FLL-SSSADKTVRLWQVGIDRCLR-----VFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD 465 (531)
Q Consensus 396 ~sp~~-~l~-s~s~Dg~V~lwdl~~~~~l~-----~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~~~~~~ 465 (531)
+.|+| .++ +-..++.|.+.|.......+ ...-......+.++| ++.++++.... +.+.+.|..++.+..
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 99998 444 44578999999987766653 122334457789999 88866654443 599999999988876
Q ss_pred ecC-CCC-ceEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEEEEee
Q 009614 466 YTD-IRE-IVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 466 ~~~-~~~-~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~~l~~~~~ 509 (531)
... ... ....+..+|+|+.+.+... .+.+.+-|..+.++.....
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 422 122 4677899999999988844 4889999999888776544
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.88 E-value=0.1 Score=54.38 Aligned_cols=217 Identities=12% Similarity=0.142 Sum_probs=110.5
Q ss_pred ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (531)
Q Consensus 238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 317 (531)
...+.++|+|++++++ .+|...|+...... . ...+.-....|.+.+ .+|+-...++|.|+.--+..
T Consensus 35 p~~ls~npngr~v~V~-g~geY~iyt~~~~r-------~-----k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVC-GDGEYEIYTALAWR-------N-----KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SEEEE-TTSSEEEEE-ETTEEEEEETTTTE-------E-----EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CeeEEECCCCCEEEEE-cCCEEEEEEccCCc-------c-----cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccc
Confidence 4568999999999994 57778887732111 1 112445567898855 57777778899997432333
Q ss_pred cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc
Q 009614 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (531)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 397 (531)
....+.... .+..+. . +.+ +....+..+.+|+..... .+..+... +|..+.|+
T Consensus 101 ~~k~i~~~~-~~~~If--~---G~L---------------L~~~~~~~i~~yDw~~~~----~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 101 VVKSIKLPF-SVEKIF--G---GNL---------------LGVKSSDFICFYDWETGK----LIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp TT-----SS--EEEEE------SSS---------------EEEEETTEEEEE-TTT------EEEEESS---E-EEEEE-
T ss_pred cceEEcCCc-ccceEE--c---CcE---------------EEEECCCCEEEEEhhHcc----eeeEEecC--CCcEEEEE
Confidence 322332211 011111 0 111 222233356666665432 34444422 48999999
Q ss_pred CCC-eEEEEeCCCcEEEEECCCC-----------eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614 398 KNG-FLLSSSADKTVRLWQVGID-----------RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 398 p~~-~l~s~s~Dg~V~lwdl~~~-----------~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~ 464 (531)
+++ +++..+ +..+.|++.... ..+..+. ....|.+.+|.- + .|+-.... .|+- +..|...
T Consensus 154 ~~g~~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d--~fiYtT~~-~lkY--l~~Ge~~ 226 (443)
T PF04053_consen 154 DDGELVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-D--CFIYTTSN-HLKY--LVNGETG 226 (443)
T ss_dssp TTSSEEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-T--EEEEE-TT-EEEE--EETTEEE
T ss_pred CCCCEEEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc-C--EEEEEcCC-eEEE--EEcCCcc
Confidence 999 666665 457788775443 0222332 367899999975 3 44444444 6665 6666666
Q ss_pred EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 465 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
.+.....+++=+.+.|..+.+.....|+.|..+.+...
T Consensus 227 ~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 227 IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 55555667888888887788898989999988877643
No 353
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.28 Score=48.56 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=73.9
Q ss_pred eeEEEEcCCCeEEEEeCC----------CcEEEEECC-CCeEEEEee-cCCceEEEEEeeCCCCEEEEEe-CCCeEEEEe
Q 009614 391 VLDLSWSKNGFLLSSSAD----------KTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS-IDGKVRIWE 457 (531)
Q Consensus 391 I~~l~~sp~~~l~s~s~D----------g~V~lwdl~-~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd 457 (531)
.+++...|+|.+..+... ..-.||-+. .+..++.+. +-..-+.|+|+| |++.|+..- ..+.|.-|+
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEe
Confidence 445556666644444333 011344443 444444443 345568899999 886666554 457888887
Q ss_pred CCC--C----e--EEEecCCCCceEEEEEccCCCEEEEEeCCC-cEEEEeCCCCeEEEEeeee
Q 009614 458 VRR--C----Q--VVDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 458 ~~~--~----~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~~~~~l~~~~~~~ 511 (531)
+.. + + .+......+..-.++...+|.+.+++...| .|.+|+.. ++++..+.++
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 762 1 1 122333445667788888998876666555 89999999 8998877765
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.81 E-value=0.36 Score=51.40 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=69.8
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEE------------------eCCCeEEEEeCCCCe
Q 009614 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG------------------SIDGKVRIWEVRRCQ 462 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sg------------------s~Dg~I~Iwd~~~~~ 462 (531)
.++.++.+|.+...|..+++.+...... ...++.+| +.++.+ ..+|.|.-.|+.+++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 5778889999999999999988776422 11233333 233332 246788899999988
Q ss_pred EEEecCCC---------CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 463 VVDYTDIR---------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 463 ~~~~~~~~---------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
.+-..... .....-.....+..|++++.||.++.+|..+|+++.+.++
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 77222111 1111101112567889999999999999999999988765
No 355
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.71 E-value=0.052 Score=50.78 Aligned_cols=107 Identities=12% Similarity=0.072 Sum_probs=84.4
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEc
Q 009614 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYC 479 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~s 479 (531)
+++.|+..+.+.--|..+|+.+..-.....+.+-+.- -+++++.|+..|.+++.+..++... .+......-......
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 8888999999999999999888766556666555544 4678999999999999999999554 343333322345567
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 480 pdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
+++..+..|+.|++.+..|.++...+.+.+
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEecc
Confidence 899999999999999999999988887755
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.70 E-value=0.043 Score=60.49 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=81.7
Q ss_pred CcceeEeecCCCC-eeEEEEcCC-----C-eEEEEeCCCcEEEEECCCCe--EEE----EeecCCceEEEEEeeCCCCEE
Q 009614 378 EKPLHEFQGHSSE-VLDLSWSKN-----G-FLLSSSADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYF 444 (531)
Q Consensus 378 ~~~~~~~~~h~~~-I~~l~~sp~-----~-~l~s~s~Dg~V~lwdl~~~~--~l~----~~~h~~~V~sv~fsp~d~~~l 444 (531)
++.+..+..|... |..++-... . ..+.|-.+..+..||.+-.. ++. .+......+|++-.. ..+|
T Consensus 514 GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~--~G~i 591 (794)
T PF08553_consen 514 GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE--DGYI 591 (794)
T ss_pred CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC--CceE
Confidence 3456666666543 555543221 1 55677788899999998532 222 223455667777654 5689
Q ss_pred EEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614 445 ISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 445 ~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 499 (531)
|+|+.+|.||+||--..+.- .+.+...+|..|+.+.||++|++.+ +..+.++++
T Consensus 592 avgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 592 AVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 99999999999995432222 3567789999999999999988777 456777775
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.60 E-value=0.67 Score=47.07 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=58.4
Q ss_pred EEEEc-CCC--eEEEEeCCCc--EEEEECCCCeEEEEeecCCceEE-EEEeeCCCCEEEEEeCCC----eEEEEeCC-CC
Q 009614 393 DLSWS-KNG--FLLSSSADKT--VRLWQVGIDRCLRVFSHNNYVTS-VAFNPVDDNYFISGSIDG----KVRIWEVR-RC 461 (531)
Q Consensus 393 ~l~~s-p~~--~l~s~s~Dg~--V~lwdl~~~~~l~~~~h~~~V~s-v~fsp~d~~~l~sgs~Dg----~I~Iwd~~-~~ 461 (531)
.+.+. +++ +|.....+|. |.+++..++.........-.|+. +.+++..+.++.++..++ .|..-++. .+
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 45554 555 5555557776 44556656654433345566755 677884444555665533 67777778 67
Q ss_pred eEEEecCCCCceEEEEEccCCCEEEEEeC
Q 009614 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTM 490 (531)
Q Consensus 462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 490 (531)
.+..+......-..+.|+|+|++++....
T Consensus 319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 319 EPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 77666554444478999999999876543
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.58 E-value=0.43 Score=49.53 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=54.7
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~ 467 (531)
+++..|++||++ +++.-..+|.+.+....-.+. ...+... ..- ....++-++.|..+..|. ..+.+.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~--~~e~~~~---~~~---~p~~~~WCG~dav~l~~~----~~l~lv 284 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK--LCEFDTD---SKS---PPKQMAWCGNDAVVLSWE----DELLLV 284 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccce--eEEeecC---cCC---CCcEEEEECCCcEEEEeC----CEEEEE
Confidence 567777777777 666666667666665432221 1111111 111 234566666666666662 223222
Q ss_pred CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
+..+. .+.|..++..++..-.|| |||+.-...+++++.+
T Consensus 285 g~~~~--~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 285 GPDGD--SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred CCCCC--ceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 22221 134444555555555566 7777777777766654
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.49 E-value=0.39 Score=48.06 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=75.3
Q ss_pred CCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCe-EEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC--CC
Q 009614 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RC 461 (531)
Q Consensus 387 h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~-~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~--~~ 461 (531)
..++|++|+-- +++|+.+. .+.|.+|++...+ .+..-. ....++++... +++++.|.....|.++... ..
T Consensus 87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence 47889999876 44555544 4789999998877 544433 44466776664 5699999988888877544 33
Q ss_pred eEE--EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 462 QVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 462 ~~~--~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
+.. ........+++++|-++++.++++..+|.+.++...
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 333 233345678999998777899999999999999876
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.48 E-value=1.4 Score=45.87 Aligned_cols=216 Identities=16% Similarity=0.114 Sum_probs=102.5
Q ss_pred CEEEEEEccCCCEEEEE-eCCC----cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccccc
Q 009614 286 SILTMKFSLDGQYLASG-GEDG----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (531)
Q Consensus 286 ~I~~l~fspdg~~Lasg-s~Dg----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (531)
.+..+.++|+|++||-+ +..| +|++.|+.+++.+...-. ......+.|..+....+.. ......... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~-~~~~~~~~~----~~ 198 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYT-RFDEDQRTS----DS 198 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEE-ECSTTTSS-----CC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEE-EeCcccccc----cC
Confidence 34467899999988765 3334 599999999976542211 1111124444433322222 111110000 11
Q ss_pred CCCceEEEeCCccccccCcceeEeecCCC--CeeEEEEcCCC-e-EEEEeCC---CcEEEEECCCC-----eEEEEeecC
Q 009614 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-F-LLSSSAD---KTVRLWQVGID-----RCLRVFSHN 428 (531)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~I~~l~~sp~~-~-l~s~s~D---g~V~lwdl~~~-----~~l~~~~h~ 428 (531)
.....++.+......-.. ...+..... ....+..++++ + ++..... ..+.+.++..+ .........
T Consensus 199 ~~~~~v~~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 113334444333222111 122333222 26678889998 4 4444433 34788888764 344444444
Q ss_pred CceEEEEEeeCCCCEEEEEe---CCCeEEEEeCCCCe----EEEecCCCCceEEEEEccCCCEEEEEe-CCC--cEEEEe
Q 009614 429 NYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDGKGGIVGT-MTG--NCRFYD 498 (531)
Q Consensus 429 ~~V~sv~fsp~d~~~l~sgs---~Dg~I~Iwd~~~~~----~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg--~I~iwd 498 (531)
..+....-+. .+.+++... ..+.|...++.... ...+..+...+.-..+...+.+|+... .++ .|++|+
T Consensus 277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 4454444443 444444432 34677777877654 224455555333334444555555544 444 389999
Q ss_pred CCCCeEEEEeee
Q 009614 499 IKDNQLYQQNQI 510 (531)
Q Consensus 499 ~~~~~l~~~~~~ 510 (531)
+..+........
T Consensus 356 ~~~~~~~~~~~~ 367 (414)
T PF02897_consen 356 LDDGKESREIPL 367 (414)
T ss_dssp TT-TEEEEEEES
T ss_pred CCCCcEEeeecC
Confidence 984454444443
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.36 E-value=0.078 Score=55.02 Aligned_cols=121 Identities=19% Similarity=0.311 Sum_probs=83.5
Q ss_pred EeecCCCCeeEEEEcCCC-eEEE---EeCC-CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEE-EeCCCe--EE
Q 009614 383 EFQGHSSEVLDLSWSKNG-FLLS---SSAD-KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS-GSIDGK--VR 454 (531)
Q Consensus 383 ~~~~h~~~I~~l~~sp~~-~l~s---~s~D-g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~s-gs~Dg~--I~ 454 (531)
.+......+..-.|+|++ .++. -... ..+.++|+.+++..........-..-+|+| |++.|+- ...||. |.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEE
Confidence 334445567777899988 3222 2222 459999999998877777666667789999 7766554 455664 66
Q ss_pred EEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeC-CCc--EEEEeCCCCeE
Q 009614 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGN--CRFYDIKDNQL 504 (531)
Q Consensus 455 Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~--I~iwd~~~~~l 504 (531)
++|+.+++...+....+.-+.-.|+|||++|+-.+. .|. |.++++..+..
T Consensus 266 ~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 266 LMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred EEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 778888776655555555557789999999988765 343 77778777665
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.32 E-value=0.073 Score=58.71 Aligned_cols=150 Identities=9% Similarity=0.173 Sum_probs=94.3
Q ss_pred CCCEEEEE-eCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcc
Q 009614 295 DGQYLASG-GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV 373 (531)
Q Consensus 295 dg~~Lasg-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (531)
+.++|+.- .....|+-.|+..|+.+..+..+...+ ...+.+.... ........+.+-.+..+..|+++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~---------aqlt~e~tflGls~n~lfriDpR~ 561 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKF---------AQLTNEQTFLGLSDNSLFRIDPRL 561 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccc---------cccCCCceEEEECCCceEEeccCC
Confidence 34444443 345788999999999988887766543 2333332110 000111224445556677777775
Q ss_pred ccccCccee---EeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeC
Q 009614 374 FRLLEKPLH---EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI 449 (531)
Q Consensus 374 ~~~~~~~~~---~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~ 449 (531)
-. .+.+. ..........|++-..+|+||.|+.+|.||+||--..+....+. ...+|..|..+. ||+++++.+.
T Consensus 562 ~~--~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc~ 638 (794)
T PF08553_consen 562 SG--NKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-DGKWILATCK 638 (794)
T ss_pred CC--CceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-CCcEEEEeec
Confidence 33 11111 11124456889999899999999999999999954333333332 578999999999 9998887664
Q ss_pred CCeEEEEeC
Q 009614 450 DGKVRIWEV 458 (531)
Q Consensus 450 Dg~I~Iwd~ 458 (531)
..+.+++.
T Consensus 639 -tyLlLi~t 646 (794)
T PF08553_consen 639 -TYLLLIDT 646 (794)
T ss_pred -ceEEEEEE
Confidence 56777775
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.25 E-value=2.2 Score=45.86 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=39.3
Q ss_pred CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 451 g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
|.|.-+|+.++++.-......+...-...-.+.+++.++.+|.++.+|.++|+++.+.++.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4577788888876632222221111111124557777888999999999999999887653
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.08 E-value=1.4 Score=42.11 Aligned_cols=188 Identities=15% Similarity=0.188 Sum_probs=97.9
Q ss_pred EEcccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614 279 EFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (531)
Q Consensus 279 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (531)
.+.+-...+.+|+|+|+.+ ++++....+.|...+. +|+.+..+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~---------------------------------- 60 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP---------------------------------- 60 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE----------------------------------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe----------------------------------
Confidence 3455556799999999766 5555666777766665 344433322
Q ss_pred cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe------EEEEee----
Q 009614 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR------CLRVFS---- 426 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~------~l~~~~---- 426 (531)
+.+ .+..-.|++..++ ++++.-.++.+.++++.... ....+.
T Consensus 61 --------------------------l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (248)
T PF06977_consen 61 --------------------------LDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP 113 (248)
T ss_dssp ---------------------------SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S
T ss_pred --------------------------CCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc
Confidence 111 3456778888777 55555468889998884221 112221
Q ss_pred --cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC---C-eE--EEe------cCCCCceEEEEEccC-CCEEEEEeCC
Q 009614 427 --HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR---C-QV--VDY------TDIREIVSAVCYCPD-GKGGIVGTMT 491 (531)
Q Consensus 427 --h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~---~-~~--~~~------~~~~~~v~~v~~spd-g~~l~sgs~d 491 (531)
++..+-.|+|+| ..+.|+.+-...-..||.+.. . .. ... ......+.+++++|. |.+++....+
T Consensus 114 ~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es 192 (248)
T PF06977_consen 114 NKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES 192 (248)
T ss_dssp ---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT
T ss_pred cCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC
Confidence 456689999999 555555555665566666653 1 11 111 113345789999995 4566777778
Q ss_pred CcEEEEeCCCCeEEEEeeeeeccc-ccCCCceeeeEEEee
Q 009614 492 GNCRFYDIKDNQLYQQNQICLQGK-KKLPGKRITGFQVVK 530 (531)
Q Consensus 492 g~I~iwd~~~~~l~~~~~~~~~~~-kk~~~~~It~l~f~p 530 (531)
..|.++| ..|+++....+..... .......-.||+|.|
T Consensus 193 ~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 193 RLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp TEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred CeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 8899999 5677777665432100 011234567777754
No 365
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.023 Score=62.66 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=73.8
Q ss_pred eEEEEeCCCcEEEEECCCCeE--EEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCc---eE
Q 009614 401 FLLSSSADKTVRLWQVGIDRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI---VS 474 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~--l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~---v~ 474 (531)
.++.|+..|.|...|+...-+ .+--...++|++++|+. ++.+++.|-.+|.|.+||+..+++++ +..+..+ |.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 788899999999999876533 22223568999999998 99999999999999999999988775 4444443 44
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 475 AVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 475 ~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
.+.+..++..++++...|. +|.+.
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4556667777888887776 66654
No 366
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.95 E-value=1.1 Score=47.63 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=66.3
Q ss_pred eCCCcEEEEECCCCeEEEEeecC-C--------------------ce-EEEEEeeCCCCEEEEEeCCC------------
Q 009614 406 SADKTVRLWQVGIDRCLRVFSHN-N--------------------YV-TSVAFNPVDDNYFISGSIDG------------ 451 (531)
Q Consensus 406 s~Dg~V~lwdl~~~~~l~~~~h~-~--------------------~V-~sv~fsp~d~~~l~sgs~Dg------------ 451 (531)
+.++.|..+|..+++.+..+... . .+ ...++.+ .+..++.++.++
T Consensus 172 ~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~ 250 (488)
T cd00216 172 GVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPG 250 (488)
T ss_pred CCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCC
Confidence 34678888888888887766421 1 01 1234444 456777777665
Q ss_pred ------eEEEEeCCCCeEEE-e--cCCCC----ceEEEEEc----cCCC---EEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 452 ------KVRIWEVRRCQVVD-Y--TDIRE----IVSAVCYC----PDGK---GGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 452 ------~I~Iwd~~~~~~~~-~--~~~~~----~v~~v~~s----pdg~---~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
.|.-+|+.+++++- . ..+.. ......+. -+|. .+++++.+|.+...|..+|+++.+...
T Consensus 251 ~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 251 DNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE 329 (488)
T ss_pred CCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe
Confidence 79999999998872 2 11110 00111111 1343 678888999999999999999987654
No 367
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.90 E-value=0.63 Score=44.52 Aligned_cols=123 Identities=12% Similarity=0.125 Sum_probs=85.0
Q ss_pred CCeeEEEEcCCC-eEEEEeCCC--cEEEEECCCCeEEEEeecCC--ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614 389 SEVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg--~V~lwdl~~~~~l~~~~h~~--~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~ 463 (531)
.....+.+..++ ++-+.+.-| .|+.+|+.+++.+....-+. .--.|+.. ++.++...-.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 345678887777 666666555 69999999999887765332 23445554 345555666789999999999988
Q ss_pred EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc
Q 009614 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (531)
Q Consensus 464 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~ 515 (531)
+........-+.++ .||+.|+.......++++|..+-+...++++...+.
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCE
Confidence 86555556677777 577788888778899999999999999888876654
No 368
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.85 E-value=0.58 Score=47.71 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=73.2
Q ss_pred cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeC--------------------CCcEEEEECCC
Q 009614 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA--------------------DKTVRLWQVGI 418 (531)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~--------------------Dg~V~lwdl~~ 418 (531)
+...+.+++++...+.+...--. -.+....-.++-|.|.. .++|+.. -.++.+||+.+
T Consensus 153 G~g~Ggf~llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 153 GNGPGGFVLLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp S-S--EEEEE-TTT--EEEE--S-B-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred CCCCCcEEEEcCccccccceecc-CCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 34555677777776655321110 01122334567777765 6666542 35799999999
Q ss_pred CeEEEEeecC---CceEEEEEeeC-CCC-EEEEEeCCCeEEEEeC-CCCe-----EEEecCC-----------------C
Q 009614 419 DRCLRVFSHN---NYVTSVAFNPV-DDN-YFISGSIDGKVRIWEV-RRCQ-----VVDYTDI-----------------R 470 (531)
Q Consensus 419 ~~~l~~~~h~---~~V~sv~fsp~-d~~-~l~sgs~Dg~I~Iwd~-~~~~-----~~~~~~~-----------------~ 470 (531)
.+.++++... ..+.-|.|... +.. -|+.+....+|..|-- ..++ ++..... .
T Consensus 232 r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 232 RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 9999999743 34556777541 222 3444445556655544 3332 3322111 3
Q ss_pred CceEEEEEccCCCEEEEEeC-CCcEEEEeCCC-CeEEEEeeeeecc
Q 009614 471 EIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKD-NQLYQQNQICLQG 514 (531)
Q Consensus 471 ~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~-~~l~~~~~~~~~~ 514 (531)
.-|+.|..|.|.++|.+.+. +|.|+.||+.. .+....-++.+.|
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECc
Confidence 45899999999999977665 89999999976 3334444444433
No 369
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.80 E-value=0.031 Score=38.27 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=29.9
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (531)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 318 (531)
...|.+++|+|...+||.|..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5543
No 370
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.80 E-value=0.04 Score=37.70 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=30.1
Q ss_pred cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
......|..++|+|...+||.|+.+|.|.+|.++
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3445679999999999999999999999999994
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.76 E-value=1.1 Score=43.44 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=69.8
Q ss_pred eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE---------------EeecCCceEEEE-EeeCCCCEEEEEeCCCeE
Q 009614 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR---------------VFSHNNYVTSVA-FNPVDDNYFISGSIDGKV 453 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~---------------~~~h~~~V~sv~-fsp~d~~~l~sgs~Dg~I 453 (531)
|..|...|.- .|+.-+ |+.+.++++..-.... .+.....+...+ -....+...+......+|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 8888888865 443333 5999999987544333 222233444444 112234444444555689
Q ss_pred EEEeCCCC-----eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614 454 RIWEVRRC-----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (531)
Q Consensus 454 ~Iwd~~~~-----~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~ 506 (531)
.||..... +...-......+..++|. ++.|++|..++ ..+.|+.++....
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~ 171 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE 171 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE
Confidence 99887652 344445556888999998 56788887554 8888998766543
No 372
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.68 E-value=1.1 Score=41.76 Aligned_cols=131 Identities=10% Similarity=0.122 Sum_probs=81.5
Q ss_pred CCeeEEEEcCCCeEEEEeCC----------CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCC-EEEEEeCCCeEEEEe
Q 009614 389 SEVLDLSWSKNGFLLSSSAD----------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWE 457 (531)
Q Consensus 389 ~~I~~l~~sp~~~l~s~s~D----------g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd 457 (531)
...++-..+|+|.+..|.+. |.++.|-. .++....+..-.--+.++|+. +.+ +.++-+.+-.|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCccccccc-cCcEEEEEccCceEEeeee
Confidence 34556677899955555542 33444432 222222223333346788987 554 455667777887787
Q ss_pred --CCCCeEE------EecC----CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeee
Q 009614 458 --VRRCQVV------DYTD----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (531)
Q Consensus 458 --~~~~~~~------~~~~----~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~ 525 (531)
..++.+. .+.. .....-.++..-+|++.++.-..|+|...|..+|+++++++++ ..+||+
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t~qits 258 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------TPQITS 258 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------CCceEE
Confidence 5555432 2222 1112334556668888888888999999999999999987754 357788
Q ss_pred EEEe
Q 009614 526 FQVV 529 (531)
Q Consensus 526 l~f~ 529 (531)
.+|.
T Consensus 259 ccFg 262 (310)
T KOG4499|consen 259 CCFG 262 (310)
T ss_pred EEec
Confidence 7774
No 373
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=1.6 Score=44.92 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=85.5
Q ss_pred CeeEEEEcCCC-eEEEEe---CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeCCCCeEE
Q 009614 390 EVLDLSWSKNG-FLLSSS---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s---~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~~~~~~~ 464 (531)
....+++.+++ .++.+. .++++.+.|-.+++.+....-...-..+++.| +++.++.. ..++.|.+.|.....+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence 45578888888 444443 37899999999998888865332238999999 88855554 47899999998877666
Q ss_pred E-----ecCCCCceEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEEEE
Q 009614 465 D-----YTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 465 ~-----~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~~~~l~~~ 507 (531)
. ..........+.+.|+|.++.+.... +.+...|..++.....
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 3 23334455779999999977665544 5899999998887764
No 374
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.66 E-value=2.1 Score=40.93 Aligned_cols=180 Identities=13% Similarity=0.073 Sum_probs=110.9
Q ss_pred CEEEEEEccCCCEEEEEeCCC--cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC
Q 009614 286 SILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (531)
Q Consensus 286 ~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (531)
-...+.|..+|.++-+.|.-| .|+.+|+.+++.......+....
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F---------------------------------- 91 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF---------------------------------- 91 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------------------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc----------------------------------
Confidence 456788878888888888766 68899998887554433221100
Q ss_pred ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCE
Q 009614 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443 (531)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~ 443 (531)
-.-+.-+...+..|.| .++...+||..+-+.+..+.....=+.++. ++..
T Consensus 92 -----------------gEGit~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~ 141 (264)
T PF05096_consen 92 -----------------GEGITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKR 141 (264)
T ss_dssp -----------------EEEEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSC
T ss_pred -----------------ceeEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCE
Confidence 0000011223333443 568899999999999999987777788884 5666
Q ss_pred EEEEeCCCeEEEEeCCCCeEEE---ecCCC---CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecc---
Q 009614 444 FISGSIDGKVRIWEVRRCQVVD---YTDIR---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG--- 514 (531)
Q Consensus 444 l~sgs~Dg~I~Iwd~~~~~~~~---~~~~~---~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~--- 514 (531)
|+.......++++|..+.+... ..... ..++-+.|. +|...|=.-....|..-|..+|+....+.+..--
T Consensus 142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~ 220 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV 220 (264)
T ss_dssp EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH
T ss_pred EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc
Confidence 7666667799999998876553 22222 235566775 6766666666788999999999998877643211
Q ss_pred ----cccCCCceeeeEEEee
Q 009614 515 ----KKKLPGKRITGFQVVK 530 (531)
Q Consensus 515 ----~kk~~~~~It~l~f~p 530 (531)
.+.+......||++.|
T Consensus 221 ~~~~~~~~~~dVLNGIAyd~ 240 (264)
T PF05096_consen 221 GRDKSRQPDDDVLNGIAYDP 240 (264)
T ss_dssp TSTTST--TTS-EEEEEEET
T ss_pred cccccccccCCeeEeEeEeC
Confidence 1223356889999875
No 375
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.34 E-value=0.91 Score=38.50 Aligned_cols=105 Identities=15% Similarity=0.219 Sum_probs=76.7
Q ss_pred eEEEEeCCCcEEEEECC--------CCeEEEEeecCCceEEEEEeeC----CCCEEEEEeCCCeEEEEeCCCCeEEEecC
Q 009614 401 FLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~--------~~~~l~~~~h~~~V~sv~fsp~----d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~ 468 (531)
.|+.++.-+.|.|++.. ....+..+..+..|++|+--|- ....|+.|+. ..+..||+....-+-+..
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhh
Confidence 67888888999999875 3345677778888999976653 3456777765 589999999988777777
Q ss_pred CCCceEEEEEcc----CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614 469 IREIVSAVCYCP----DGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 469 ~~~~v~~v~~sp----dg~~l~sgs~dg~I~iwd~~~~~l~~~ 507 (531)
..+.|.++.+-. +..++++|+ +-.|.-||....++...
T Consensus 91 ~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 91 VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 778888888743 344555554 56677788877776654
No 376
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.27 E-value=4.3 Score=41.91 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=57.6
Q ss_pred CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEE-EEEc-cC----------------CC-EEEEE
Q 009614 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSA-VCYC-PD----------------GK-GGIVG 488 (531)
Q Consensus 429 ~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~-v~~s-pd----------------g~-~l~sg 488 (531)
-.+.+|+.+| ++++.|+...=|.|.++|+.++.++. |++..+.-.. +... +. .. +++-+
T Consensus 308 R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 4578899999 78888887777999999999988775 5555443111 1100 00 11 23446
Q ss_pred eCCCcEEEEeCCCCeEEEEeeee
Q 009614 489 TMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 489 s~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
-.-|.|.||.++.|..+..+.+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEeC
Confidence 67899999999999998887764
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=0.48 Score=52.86 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 325 (531)
.+..++.|+..|.|...|+...-..+... ..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~n------e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQN------ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcC------CccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 44567888888988888776432111100 113579999999999999999999999999999998887777655
Q ss_pred CCCCeeE
Q 009614 326 DTDPSCL 332 (531)
Q Consensus 326 ~~~~~~~ 332 (531)
..+...+
T Consensus 172 ~ap~t~v 178 (1206)
T KOG2079|consen 172 GAPVTGV 178 (1206)
T ss_pred CCccceE
Confidence 5544443
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.11 E-value=0.62 Score=50.57 Aligned_cols=103 Identities=11% Similarity=0.067 Sum_probs=60.9
Q ss_pred eeEEEEcCCC-eEEEEeCC------------CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEE--
Q 009614 391 VLDLSWSKNG-FLLSSSAD------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI-- 455 (531)
Q Consensus 391 I~~l~~sp~~-~l~s~s~D------------g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I-- 455 (531)
...-.|+|+| .|++.... +.+.+.++..+.... .....|..+.|+| |+..++... +|+|+|
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence 5667788886 55554422 233333444333322 3356799999999 999887765 577777
Q ss_pred -EeCCCCeE-E----Ee-cCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614 456 -WEVRRCQV-V----DY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 456 -wd~~~~~~-~----~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 498 (531)
-....+.. + .+ ......+.++.|.+++.++ ++..++...+|.
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence 44344431 1 12 2233446889999999854 555555444454
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=0.6 Score=48.23 Aligned_cols=118 Identities=17% Similarity=0.201 Sum_probs=76.9
Q ss_pred cceeEeecCCCCeeEEEEcCCC---e-----EEEEeCCCcEEEEECCCCe--EEEEe-----ecCCceEEEEEeeCCCCE
Q 009614 379 KPLHEFQGHSSEVLDLSWSKNG---F-----LLSSSADKTVRLWQVGIDR--CLRVF-----SHNNYVTSVAFNPVDDNY 443 (531)
Q Consensus 379 ~~~~~~~~h~~~I~~l~~sp~~---~-----l~s~s~Dg~V~lwdl~~~~--~l~~~-----~h~~~V~sv~fsp~d~~~ 443 (531)
+.+.++.-|.. |+-+.+.|+. . -+.|-.|..|.-||.+-.. .+..- .....-.|.+-. ...+
T Consensus 367 KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~ 443 (644)
T KOG2395|consen 367 KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGY 443 (644)
T ss_pred eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCce
Confidence 34555555544 6666666654 2 2345678889999987322 22211 123334444443 5679
Q ss_pred EEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 444 l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
+++||.+|.||+||.-..+.- .+.+...+|..|..+.||++|+..+ +..+.+-++.
T Consensus 444 IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 999999999999998332222 3778889999999999999887766 5556666653
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.79 E-value=0.089 Score=48.46 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=62.6
Q ss_pred eEEEEeCCCcEEEEECCCCeE-EEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC--CceEEE
Q 009614 401 FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--EIVSAV 476 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~-l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~--~~v~~v 476 (531)
.++.|+.+|.|.+|....... ...+ .....|-++.-.-.++.+..+++.||.||.|++.-.+.+.+.++. .++...
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 789999999999998862111 1111 122333333333235668999999999999999998888654443 344444
Q ss_pred EEccCCCEEEEE--eCCCcEEEEeCC
Q 009614 477 CYCPDGKGGIVG--TMTGNCRFYDIK 500 (531)
Q Consensus 477 ~~spdg~~l~sg--s~dg~I~iwd~~ 500 (531)
.....++.|+.+ +.|..++.|++.
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchh
Confidence 444445555555 556666666654
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.71 Score=47.71 Aligned_cols=151 Identities=14% Similarity=0.245 Sum_probs=93.1
Q ss_pred cCCCEE-EEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc
Q 009614 294 LDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (531)
Q Consensus 294 pdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (531)
.+.++| .++..-..++-.|+..|+.+.+...... +..+.+.+..... .+.....+.+-.+..+..|+++
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~---------Ql~~e~TlvGLs~n~vfriDpR 412 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFA---------QLTSEQTLVGLSDNSVFRIDPR 412 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchh---------cccccccEEeecCCceEEeccc
Confidence 344444 4455556688889999998887776655 3333333332211 1112223445556667778887
Q ss_pred cccccCcceeEeecC----CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEE-ee-cCCceEEEEEeeCCCCEEEE
Q 009614 373 VFRLLEKPLHEFQGH----SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFIS 446 (531)
Q Consensus 373 ~~~~~~~~~~~~~~h----~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~-~~-h~~~V~sv~fsp~d~~~l~s 446 (531)
+.... .+...++| .....|++--.+|+++.|+.+|.||+||- .+...++ +. ...+|..|..+. +|.+|++
T Consensus 413 v~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvta-dGKwil~ 488 (644)
T KOG2395|consen 413 VQGKN--KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTA-DGKWILA 488 (644)
T ss_pred ccCcc--eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeec-cCcEEEE
Confidence 54331 12222233 23566777777889999999999999997 4433332 32 678899999998 8888776
Q ss_pred EeCCCeEEEEeCC
Q 009614 447 GSIDGKVRIWEVR 459 (531)
Q Consensus 447 gs~Dg~I~Iwd~~ 459 (531)
.+ +..+.+-++.
T Consensus 489 Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 489 TC-KTYLLLIDTL 500 (644)
T ss_pred ec-ccEEEEEEEe
Confidence 55 4567666653
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.62 E-value=2.9 Score=40.37 Aligned_cols=172 Identities=12% Similarity=0.178 Sum_probs=101.4
Q ss_pred EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCC-CCeeEEEeecCCcceeeeecccccccccccc
Q 009614 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (531)
Q Consensus 280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (531)
+.+-...|.++.|+|+.+.|++......-.||=..+|+.+..++.... .+-.+.+..++ ..+..+- .......+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n--~fvi~dE---R~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN--QFVIVDE---RDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC--EEEEEeh---hcceEEEE
Confidence 455566699999999999999998888888888888988888765432 12222222211 1111110 01111112
Q ss_pred ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe-EEE--Ee-ec------
Q 009614 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLR--VF-SH------ 427 (531)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~-~l~--~~-~h------ 427 (531)
+...+..+.......+ ++......+...-.++|.|.+ .|+.+-...-+.||.+.... .+. .. .+
T Consensus 156 ~vd~~t~~~~~~~~~i-----~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 156 TVDADTTVISAKVQKI-----PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EEcCCccEEeccceEE-----eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 2222222221111110 122222236678899999988 88888888888888776332 111 11 01
Q ss_pred -CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614 428 -NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (531)
Q Consensus 428 -~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~ 461 (531)
-..|.++.|++..+.+++-+..++.+.-.|....
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 2357788999877778888888888888887755
No 383
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=0.17 Score=56.58 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=89.3
Q ss_pred CeeEEEEcCCC---eEEEEeCCCcEEEEECCCCe--------EEEEe----ecCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614 390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGIDR--------CLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (531)
Q Consensus 390 ~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~--------~l~~~----~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~ 454 (531)
.|..+...+++ .++..+++-.|..||+++-. +++.- .......++.|+|.-....+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666665 44455556678999987422 11111 13456688999996566778888999999
Q ss_pred EEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV 529 (531)
Q Consensus 455 Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~ 529 (531)
+..+...... .........++++|+|.|+.+++|-..|++.-|-.. .++...+.- .......+|++|.|-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~----Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPE----PPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccC----CCcCCCcceeEEEEe
Confidence 9887754333 334667789999999999999999999999988754 222222221 111224678887763
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.40 E-value=7.3 Score=40.38 Aligned_cols=245 Identities=11% Similarity=0.044 Sum_probs=116.9
Q ss_pred ceeeeCCCCeEEee-----ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC--------
Q 009614 240 SATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-------- 306 (531)
Q Consensus 240 s~~fspdg~~lasg-----s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-------- 306 (531)
...++|+|+++|.+ +....|++.|+.++.... ..+.... -..+.|.++++.|+....+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~------d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP------DGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE------EEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC------Ccccccc--cceEEEeCCCCEEEEEEeCcccccccCC
Confidence 46899999999854 333569999998763221 1122111 12399999988776654333
Q ss_pred ---cEEEEEcccCccc--cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC-ceEEEeCCccccccCcc
Q 009614 307 ---TVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD-LTCVVLPPKVFRLLEKP 380 (531)
Q Consensus 307 ---~I~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 380 (531)
.|..|.+.+...- ..+.........+..........+.+. ...... ..+++.+..........
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~-----------~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFIS-----------SSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE-----------EESSSSEEEEEEEECCCTTTSS-S
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEE-----------EEccccCCeEEEEeccccCCCcCC
Confidence 3777777666533 122222222212222222222222111 111222 34444444332101112
Q ss_pred eeEeecCCCCee-EEEEcCCC-eEEEEe---CCCcEEEEECCCCeE---E-EEeecCCc--eEEEEEeeCCCCEEEEEeC
Q 009614 381 LHEFQGHSSEVL-DLSWSKNG-FLLSSS---ADKTVRLWQVGIDRC---L-RVFSHNNY--VTSVAFNPVDDNYFISGSI 449 (531)
Q Consensus 381 ~~~~~~h~~~I~-~l~~sp~~-~l~s~s---~Dg~V~lwdl~~~~~---l-~~~~h~~~--V~sv~fsp~d~~~l~sgs~ 449 (531)
...+..+...+. .+... ++ +++... ..+.|.-.++..... . ..+.+... +..+... .+.+++..-.
T Consensus 269 ~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~ 345 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRE 345 (414)
T ss_dssp EEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEE
T ss_pred cEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEE
Confidence 233333333333 34333 44 333322 235676777776542 2 34445553 4444442 3444455444
Q ss_pred CC--eEEEEeCC-CCeEEEecC-CCCceEEEEEccCCCEEEEEeC----CCcEEEEeCCCCeEEE
Q 009614 450 DG--KVRIWEVR-RCQVVDYTD-IREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKDNQLYQ 506 (531)
Q Consensus 450 Dg--~I~Iwd~~-~~~~~~~~~-~~~~v~~v~~spdg~~l~sgs~----dg~I~iwd~~~~~l~~ 506 (531)
++ .|+++++. +........ ..+.|..+...+++..+...-. -+++.-||+.++++..
T Consensus 346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 54 58899999 554444332 3344666666666655433222 3568899999988753
No 385
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.06 E-value=2.3 Score=42.24 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=45.1
Q ss_pred cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeCCCCeEEEec
Q 009614 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVVDYT 467 (531)
Q Consensus 410 ~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~~~~~~~~~~ 467 (531)
.|-++|+.+++.+..+.-..++.+|+.+..+..+|++. ..++.+.|||..+++.+...
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 38888999999999998777888999998555577655 45799999999999988543
No 386
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.04 E-value=2.1 Score=43.72 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=57.1
Q ss_pred CeeEEEEcCCCeEEEEeCCCcEEEEECCCC-----eE---EEEeec-----CCceEEEEEeeCCCCEEEEEeCC------
Q 009614 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGID-----RC---LRVFSH-----NNYVTSVAFNPVDDNYFISGSID------ 450 (531)
Q Consensus 390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~-----~~---l~~~~h-----~~~V~sv~fsp~d~~~l~sgs~D------ 450 (531)
..+.|++.+++ |+.++....+++.|.... +. +..+.. ......++|.| |+.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 45778888888 444555544444455321 11 112221 24477899999 88766654421
Q ss_pred -------------CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEe
Q 009614 451 -------------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT 489 (531)
Q Consensus 451 -------------g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 489 (531)
|.|.-++..+++...+.........++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 445666666655443333334457899999998877644
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.96 E-value=0.42 Score=51.85 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=66.3
Q ss_pred CCCCeeEEEEcCCC-eEEEEe------CCC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC-------
Q 009614 387 HSSEVLDLSWSKNG-FLLSSS------ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID------- 450 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s------~Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D------- 450 (531)
....+...+++|+| .++..- .|. .|.+++... .. ..+......+.-.|+| ++..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEe
Confidence 33467889999999 444333 243 455555422 22 3333333478889999 87776666432
Q ss_pred -----CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEE---EeCCCCe
Q 009614 451 -----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF---YDIKDNQ 503 (531)
Q Consensus 451 -----g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i---wd~~~~~ 503 (531)
+.+.+.++..+.... .....|..+.|+|||..|+... +|.|++ -....|.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 233333443333222 3356799999999999888766 577777 4444554
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.87 E-value=0.95 Score=47.56 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=74.7
Q ss_pred cCCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECC-----CCeEEEEe--ec--CCc--eEEEEEeeCCCCEEEEEeC
Q 009614 386 GHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVG-----IDRCLRVF--SH--NNY--VTSVAFNPVDDNYFISGSI 449 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-----~l~s~s~Dg~V~lwdl~-----~~~~l~~~--~h--~~~--V~sv~fsp~d~~~l~sgs~ 449 (531)
|.-..|..+.|.|-+ .|++....+.|.+|.+. .++.+... .. .-+ -..+.||| ....|++-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 344568999999953 66777778999999985 22222221 11 222 25678999 7777777665
Q ss_pred CCeEEEEeCCC--CeEEEecCCCCceEEEEEccCCCEEEEEeCC-CcEEEEeCC
Q 009614 450 DGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIK 500 (531)
Q Consensus 450 Dg~I~Iwd~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-g~I~iwd~~ 500 (531)
...-.+++++. .++..-....+-|.+.||.+||+.|+++-.. =.-+|||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 55545666653 3333344667889999999999988776533 346788754
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.84 E-value=3.3 Score=44.97 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=65.2
Q ss_pred CC-eEEEEeCC------CcEEEEECCCCeEEEEeec--CCceEEEEEeeCCCCEEEEEeCCC-----eEEEEeCCCCeEE
Q 009614 399 NG-FLLSSSAD------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVV 464 (531)
Q Consensus 399 ~~-~l~s~s~D------g~V~lwdl~~~~~l~~~~h--~~~V~sv~fsp~d~~~l~sgs~Dg-----~I~Iwd~~~~~~~ 464 (531)
+| ..+.|+.+ .+|..||..+++....-.. .-.-..++.- ++.+.+.|+.|+ +|..||..+.+..
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 45 55666644 4577888888766544321 1111223332 678888888876 3788998887766
Q ss_pred EecCCCCceEEEEEc-cCCCEEEEEeCCCc-----EEEEeCCCCeEEEEee
Q 009614 465 DYTDIREIVSAVCYC-PDGKGGIVGTMTGN-----CRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 465 ~~~~~~~~v~~v~~s-pdg~~l~sgs~dg~-----I~iwd~~~~~l~~~~~ 509 (531)
....-......+... -+++..++|+.||. |..||..+++......
T Consensus 505 ~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 543333333322222 26677788888874 7788888777654433
No 390
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.58 E-value=2.3 Score=45.98 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=72.9
Q ss_pred CCCeeEEEEcCCCeEE-EEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeC-CCCEEEEEeCCCeEEEEeCCC---
Q 009614 388 SSEVLDLSWSKNGFLL-SSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRR--- 460 (531)
Q Consensus 388 ~~~I~~l~~sp~~~l~-s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~-d~~~l~sgs~Dg~I~Iwd~~~--- 460 (531)
...+.-+.-+.-+.++ ..+....+.|||.+.+.....- ...+.|..+.|... +++.+++.+....|.+|--..
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3344445444445333 3444567999999988755443 35889999998541 778888888999999986421
Q ss_pred ------C---eEEEecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614 461 ------C---QVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (531)
Q Consensus 461 ------~---~~~~~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 499 (531)
. +.+....++ .+|.+.+|.++|.+++.++ +.+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 122344444 6799999999997555443 56888874
No 391
>PHA02713 hypothetical protein; Provisional
Probab=93.57 E-value=2.3 Score=46.16 Aligned_cols=93 Identities=5% Similarity=-0.029 Sum_probs=54.4
Q ss_pred CcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCC------CeEEEEeCCC-CeEEE---ecCCCCceEEE
Q 009614 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRR-CQVVD---YTDIREIVSAV 476 (531)
Q Consensus 409 g~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~D------g~I~Iwd~~~-~~~~~---~~~~~~~v~~v 476 (531)
..+..||..+.+....-. +...-.+++.. ++.+.+.|+.+ ..|..||..+ .+-.. +.........+
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 357788888776543322 11111122222 56777777754 2467899887 44432 22222222222
Q ss_pred EEccCCCEEEEEeCCC--cEEEEeCCCCeEE
Q 009614 477 CYCPDGKGGIVGTMTG--NCRFYDIKDNQLY 505 (531)
Q Consensus 477 ~~spdg~~l~sgs~dg--~I~iwd~~~~~l~ 505 (531)
++ +|++.++|+.+| .+..||..+++-.
T Consensus 510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 510 LH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred EE--CCEEEEEeeecceeehhhcCccccccc
Confidence 32 788899999988 7888888887654
No 392
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.41 E-value=2 Score=47.68 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=27.6
Q ss_pred CCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCC
Q 009614 387 HSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGI 418 (531)
Q Consensus 387 h~~~I~~l~~sp~~----~l~s~s~Dg~V~lwdl~~ 418 (531)
+...|..+.|+|.+ +|+.-..|+++|+||+..
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 45679999999963 889999999999999974
No 393
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.36 E-value=4.5 Score=44.93 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=51.4
Q ss_pred cccceeeeCCCCeEEeeecCCeEEEEeCCCCc---cccc---ccccceEE--------cccCCCEEEEEEccC---CCEE
Q 009614 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQS---RELS---SLYTGQEF--------LAHEGSILTMKFSLD---GQYL 299 (531)
Q Consensus 237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~---~~~~---~~~~~~~l--------~~H~~~I~~l~fspd---g~~L 299 (531)
.|..+.++|+|.++|..+..|.+.+ .+.... ..+. ....++++ ..+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3445889999999998877664444 333210 0010 00011111 234568999999995 5789
Q ss_pred EEEeCCCcEEEEEcccCc
Q 009614 300 ASGGEDGTVRVWKVIEHE 317 (531)
Q Consensus 300 asgs~Dg~I~iWd~~~~~ 317 (531)
+.=..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 989999999999996543
No 394
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.17 E-value=5.1 Score=43.94 Aligned_cols=109 Identities=10% Similarity=0.107 Sum_probs=75.8
Q ss_pred CeeEEEEcCCC---eEEEEeCCCcEEEEECCC-------C-------------eEEEEeecCCceEEEEEe--eCCCCEE
Q 009614 390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGI-------D-------------RCLRVFSHNNYVTSVAFN--PVDDNYF 444 (531)
Q Consensus 390 ~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~-------~-------------~~l~~~~h~~~V~sv~fs--p~d~~~l 444 (531)
.|+-|....=| .|+.|..||.|.+|.+.. . ++...+.....+++++++ . ..++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence 35555444322 899999999999997621 0 122233456789999998 6 77888
Q ss_pred EEEeCCCeEEEEeCCCC--eEE--EecCCCCceEEEEEccCC---C---EEEEEeCCCcEEEEeC
Q 009614 445 ISGSIDGKVRIWEVRRC--QVV--DYTDIREIVSAVCYCPDG---K---GGIVGTMTGNCRFYDI 499 (531)
Q Consensus 445 ~sgs~Dg~I~Iwd~~~~--~~~--~~~~~~~~v~~v~~spdg---~---~l~sgs~dg~I~iwd~ 499 (531)
|+++....|.||-.... +.. .-..+...|.+|+|-++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 98888888888866542 221 123356678899998743 2 7888999999999887
No 395
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.07 E-value=11 Score=38.19 Aligned_cols=250 Identities=11% Similarity=0.070 Sum_probs=111.3
Q ss_pred eeeeCCCCeEEe-eecCCe--EEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614 241 ATLKPGDHELTL-GQRMRR--VRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (531)
Q Consensus 241 ~~fspdg~~las-gs~dg~--I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 316 (531)
=+|.++|+.|+- +..+|. +.+.|+.++... + |..+. .......++|+.+.|+-.-....|+--|+.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~--Q------LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT--Q------LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE--E---------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEE--E------CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence 478999977665 444554 455555544332 2 22222 22234567788888776666678888899888
Q ss_pred ccccceecCCCCCeeEEEeecCCccee-eeecccccc-------ccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614 317 ERLDGFDVQDTDPSCLYFTINHLSQLI-PIDVDKEKI-------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (531)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 388 (531)
+....+..+..-.....+..+.....+ .+....... .............++..+.... ....+..-.
T Consensus 113 e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-----~~~~v~~~~ 187 (386)
T PF14583_consen 113 EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-----ERKVVFEDT 187 (386)
T ss_dssp -EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------EEEEEEES
T ss_pred cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-----ceeEEEecC
Confidence 765555555554444455444433332 222111100 0011122233333444443332 233344456
Q ss_pred CCeeEEEEcCCC--eEEEEeC---CCc-EEEEECC--CCeEEEEeec--CCceEEEEEeeCCCCEEEEEe-----CCCeE
Q 009614 389 SEVLDLSWSKNG--FLLSSSA---DKT-VRLWQVG--IDRCLRVFSH--NNYVTSVAFNPVDDNYFISGS-----IDGKV 453 (531)
Q Consensus 389 ~~I~~l~~sp~~--~l~s~s~---Dg~-V~lwdl~--~~~~l~~~~h--~~~V~sv~fsp~d~~~l~sgs-----~Dg~I 453 (531)
..+.-+.++|.. +|.-|-. +.. -|||-++ .........+ ...+.-=-|.| ||..|.--+ .+..|
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEE
Confidence 677889999987 5555542 332 3667554 3333222222 22334445788 666554322 24457
Q ss_pred EEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC----------------cEEEEeCCCCeEE
Q 009614 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG----------------NCRFYDIKDNQLY 505 (531)
Q Consensus 454 ~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg----------------~I~iwd~~~~~l~ 505 (531)
.-+|+.+++...+..- .....+--++||+++|-=+.|. -|+++++..++..
T Consensus 267 ~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 267 AGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred EeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 7778887754432222 2455667788999876644432 4667888776654
No 396
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.05 E-value=18 Score=40.59 Aligned_cols=102 Identities=9% Similarity=0.059 Sum_probs=61.7
Q ss_pred CCcEEEEECCCCeEEEEeecC----------C--------ce-EEEEEeeCCCCEEEEEe------------------CC
Q 009614 408 DKTVRLWQVGIDRCLRVFSHN----------N--------YV-TSVAFNPVDDNYFISGS------------------ID 450 (531)
Q Consensus 408 Dg~V~lwdl~~~~~l~~~~h~----------~--------~V-~sv~fsp~d~~~l~sgs------------------~D 450 (531)
+|.|+-+|+.+|+.+..+... + .+ ..++++| ...+++.+. ..
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~ 413 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYS 413 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCccccc
Confidence 678999999999888776411 0 01 2345555 333333321 23
Q ss_pred CeEEEEeCCCCeEE-Eec--CCC-------CceEEEEEcc-CCC---EEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 451 GKVRIWEVRRCQVV-DYT--DIR-------EIVSAVCYCP-DGK---GGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 451 g~I~Iwd~~~~~~~-~~~--~~~-------~~v~~v~~sp-dg~---~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
+.|.-.|+.+++.. ++. .|. ....-+.+.. +|+ .++.++.+|.++++|-++|+++...+.
T Consensus 414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 45666788888766 222 221 1111122322 663 789999999999999999999976553
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.96 E-value=0.38 Score=44.41 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=41.2
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 317 (531)
-+.-+++|+.+|.|++|+........ ... ..+-..-.+.|.--.++.+..+++.||.|+.|++.-++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~-d~~----~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHS-DRV----CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred cCceEEeecccceEEEecCCccchHH-Hhh----hcccccceeccccccccceeEEeccCCceeeeccccCc
Confidence 34567889999999999887222111 000 11112222233333466688999999999999986544
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=1.4 Score=49.76 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=71.5
Q ss_pred CCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (531)
Q Consensus 389 ~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~-~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~ 465 (531)
....++.|+|.= ..+.+..|+.|++..+.. .+.+..+.....++|++|+| .|..++.|-..|++.-|-..-.....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccceeec
Confidence 345678888875 677788899999887753 23334456677899999999 99999999999999988765432221
Q ss_pred ec----CCCCceEEEEEccCCCEEEEE
Q 009614 466 YT----DIREIVSAVCYCPDGKGGIVG 488 (531)
Q Consensus 466 ~~----~~~~~v~~v~~spdg~~l~sg 488 (531)
+. .....|.+|+|-..-.++|+-
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEe
Confidence 11 114678999998777666653
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.70 E-value=6.8 Score=41.45 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=58.8
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEECCC--CeEEEEeecCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeCCCCeEE----
Q 009614 393 DLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV---- 464 (531)
Q Consensus 393 ~l~~sp~~-~l~s~s~Dg~V~lwdl~~--~~~l~~~~h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~~~~~~~---- 464 (531)
...|+|.. .|+.-.....-.+++++. .+...-+...+.|.|.+|.+ ||+.|+++ +..=.-+|||-......
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~~Csf 195 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLHRCSF 195 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhhhCCc
Confidence 46699988 555555444445666653 33344456788999999999 77766554 33446789987654322
Q ss_pred -EecCCCCceEEEEEccCCCEEEEEeC
Q 009614 465 -DYTDIREIVSAVCYCPDGKGGIVGTM 490 (531)
Q Consensus 465 -~~~~~~~~v~~v~~spdg~~l~sgs~ 490 (531)
...+..+.|.+|.-.-|. .+|+++.
T Consensus 196 cPVFdv~~~Icsi~AT~ds-qVAvaTE 221 (671)
T PF15390_consen 196 CPVFDVGGYICSIEATVDS-QVAVATE 221 (671)
T ss_pred ceeecCCCceEEEEEeccc-eEEEEec
Confidence 244555566666655444 3444443
No 400
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.64 E-value=12 Score=37.51 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=45.9
Q ss_pred EeecCCceEEEEEeeC------CCCEEEEEeCCCeEEEEeCCCCe-EE---E-ecCCCCceEEEEEccCCCEEEEEeCCC
Q 009614 424 VFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRCQ-VV---D-YTDIREIVSAVCYCPDGKGGIVGTMTG 492 (531)
Q Consensus 424 ~~~h~~~V~sv~fsp~------d~~~l~sgs~Dg~I~Iwd~~~~~-~~---~-~~~~~~~v~~v~~spdg~~l~sgs~dg 492 (531)
.+.+...++.+.|.+. .+.+|++.-..+.|....+.... +. . +......+..|++.|||.++++-..+|
T Consensus 248 ~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G 327 (331)
T PF07995_consen 248 AYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDG 327 (331)
T ss_dssp EETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTT
T ss_pred eecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCC
Confidence 3445567788888752 34566666666788888887543 22 2 233444799999999999888888888
Q ss_pred cEE
Q 009614 493 NCR 495 (531)
Q Consensus 493 ~I~ 495 (531)
.|+
T Consensus 328 ~iy 330 (331)
T PF07995_consen 328 KIY 330 (331)
T ss_dssp TEE
T ss_pred eEe
Confidence 764
No 401
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.60 E-value=11 Score=36.82 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=47.4
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEe--cCCCCceEEEEEcc------CCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614 443 YFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCP------DGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 443 ~l~sgs~Dg~I~Iwd~~~~~~~~~--~~~~~~v~~v~~sp------dg~~l~sgs~dg~I~iwd~~~~~l~~~~~ 509 (531)
.=+.|..-|.|-+||+...-+.++ .+.-...+.|+..| .|.+|+----||+|..||..+++.+-+.+
T Consensus 214 d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 214 DEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred ccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 334455567899999986544433 23334567788866 56777777779999999999988776554
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.43 E-value=3.2 Score=40.04 Aligned_cols=116 Identities=9% Similarity=0.164 Sum_probs=84.4
Q ss_pred ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~ 461 (531)
.+-...+.++.|+|+. .|++..+...-.||=...|+.++++. .-...-.|.+.- ++++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 4445569999999998 77777777777777777888888875 222345566765 6777777777888888877654
Q ss_pred eE-E-------E--ecCC-CCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614 462 QV-V-------D--YTDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 462 ~~-~-------~--~~~~-~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~ 501 (531)
.. + . ...+ +...-.++|.|....|.++-...-+.||.+..
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 21 1 1 1122 56788999999999999999888888887763
No 403
>PHA03098 kelch-like protein; Provisional
Probab=91.99 E-value=10 Score=40.76 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=51.9
Q ss_pred CcEEEEECCCCeEEEEeecC--CceEEEEEeeCCCCEEEEEeCC--------CeEEEEeCCCCeEEEecCC---CCceEE
Q 009614 409 KTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSID--------GKVRIWEVRRCQVVDYTDI---REIVSA 475 (531)
Q Consensus 409 g~V~lwdl~~~~~l~~~~h~--~~V~sv~fsp~d~~~l~sgs~D--------g~I~Iwd~~~~~~~~~~~~---~~~v~~ 475 (531)
..+..||..+++....-..+ ..-.+++.. ++.+++.|+.+ ..+.+||..+.+-...... ......
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 483 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL 483 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE
Confidence 45788888776654332211 111222222 56677777643 2388999988765433211 111122
Q ss_pred EEEccCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 009614 476 VCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLY 505 (531)
Q Consensus 476 v~~spdg~~l~sgs~d-----g~I~iwd~~~~~l~ 505 (531)
+. .+++.++.|+.+ +.|.+||..+++-.
T Consensus 484 ~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 484 CI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 22 277777888764 46889998877653
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.96 E-value=3.6 Score=46.12 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=75.1
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEEeecCCce---------EEEEEee---------------CCCCEEEEEeCCCeEE
Q 009614 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV---------TSVAFNP---------------VDDNYFISGSIDGKVR 454 (531)
Q Consensus 399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V---------~sv~fsp---------------~d~~~l~sgs~Dg~I~ 454 (531)
++.|+.++.++.|.-.|..+++.+..+.....+ ..+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 447888888899999999999998888633221 1233321 1344788889999999
Q ss_pred EEeCCCCeEEEecCCCCceE-------------EEEEcc--CCCEEEEEeC----------CCcEEEEeCCCCeEEEEee
Q 009614 455 IWEVRRCQVVDYTDIREIVS-------------AVCYCP--DGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQ 509 (531)
Q Consensus 455 Iwd~~~~~~~~~~~~~~~v~-------------~v~~sp--dg~~l~sgs~----------dg~I~iwd~~~~~l~~~~~ 509 (531)
-.|..+++..-..+....|. .+.-.| .+..+++|+. +|.|+-||+.+|+++.++.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998874333222210 111112 2345666643 6889999999999998876
Q ss_pred e
Q 009614 510 I 510 (531)
Q Consensus 510 ~ 510 (531)
.
T Consensus 354 ~ 354 (764)
T TIGR03074 354 P 354 (764)
T ss_pred c
Confidence 4
No 405
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.92 E-value=6.7 Score=36.65 Aligned_cols=89 Identities=10% Similarity=0.200 Sum_probs=59.5
Q ss_pred eeEEEEcCCC--eEEEEeCCCcEEEEE--CCCCeE-----EEEeec-----CCceEEEEEeeCCCCEEEEEeCCCeEEEE
Q 009614 391 VLDLSWSKNG--FLLSSSADKTVRLWQ--VGIDRC-----LRVFSH-----NNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (531)
Q Consensus 391 I~~l~~sp~~--~l~s~s~Dg~V~lwd--l~~~~~-----l~~~~h-----~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iw 456 (531)
-+.|+|+.+. +.++-+.+-+|.-|| ..+|.. +..+.. ....-.++... +++++++.-..++|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence 3567777665 555666777777777 444432 212211 11123345555 88899998889999999
Q ss_pred eCCCCeEEE-ecCCCCceEEEEEcc
Q 009614 457 EVRRCQVVD-YTDIREIVSAVCYCP 480 (531)
Q Consensus 457 d~~~~~~~~-~~~~~~~v~~v~~sp 480 (531)
|..+++.+. +.-....|+++||--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 999999874 555678899999964
No 406
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.91 E-value=0.52 Score=31.36 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=26.1
Q ss_pred CCEEEEEEccCC---CEEEEEeCCCcEEEEEccc
Q 009614 285 GSILTMKFSLDG---QYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 285 ~~I~~l~fspdg---~~Lasgs~Dg~I~iWd~~~ 315 (531)
++|.+++|+|.. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999844 4888888889999999985
No 407
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.66 E-value=27 Score=39.35 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=74.8
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeC--CCC---EEEEEeCCCeEEEE-eCC
Q 009614 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV--DDN---YFISGSIDGKVRIW-EVR 459 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~--d~~---~l~sgs~Dg~I~Iw-d~~ 459 (531)
+.++..+.+.+. .++.++.++.+...++..+...... .....|.|+.++|. ..+ +++.|..+..+.+. -+.
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 344444444444 6666676677777777655522222 24678999999984 333 78888877665443 333
Q ss_pred CCeEEE-----ecCCCCceEEEEEccCCCEEEEEeCCCcEEEE--eCCCCeEEEEeeee
Q 009614 460 RCQVVD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY--DIKDNQLYQQNQIC 511 (531)
Q Consensus 460 ~~~~~~-----~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw--d~~~~~l~~~~~~~ 511 (531)
....+. .......|.-.++-.|..+|.++..||.+..| |..++++-...+..
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~ 626 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT 626 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccc
Confidence 333332 12223345556666778999999999998666 55566665544433
No 408
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.50 E-value=5.9 Score=43.46 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=95.3
Q ss_pred CCeEEeeecCCeEEEEeCCCCcccccc-----cccc--------eEE--cccCCCEEEEEEcc--CCCEEEEEeCCCcEE
Q 009614 247 DHELTLGQRMRRVRVHPVKKQSRELSS-----LYTG--------QEF--LAHEGSILTMKFSL--DGQYLASGGEDGTVR 309 (531)
Q Consensus 247 g~~lasgs~dg~I~vwd~~~~~~~~~~-----~~~~--------~~l--~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~ 309 (531)
..++.++. .+.|.||+.......... +... ..+ ..-...|+-|.... +...|+.|.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777764 789999998754442210 0000 000 00223467666654 456899999999999
Q ss_pred EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (531)
Q Consensus 310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 389 (531)
+|.+.+--. .+.......... . .+..-+|...+. -..
T Consensus 128 ~Yyt~~I~~--~i~~~~~~~~~~------------------------------~----------~r~~i~P~f~~~-v~~ 164 (717)
T PF08728_consen 128 AYYTETIIE--AIERFSEDNDSG------------------------------F----------SRLKIKPFFHLR-VGA 164 (717)
T ss_pred EEEHHHHHH--HHHhhccccccc------------------------------c----------ccccCCCCeEee-cCC
Confidence 998754211 010000000000 0 000012222222 233
Q ss_pred CeeEEEEc--CCC-eEEEEeCCCcEEEEECCCC--eEE--EEeecCCceEEEEEeeCC--CC---EEEEEeCCCeEEEEe
Q 009614 390 EVLDLSWS--KNG-FLLSSSADKTVRLWQVGID--RCL--RVFSHNNYVTSVAFNPVD--DN---YFISGSIDGKVRIWE 457 (531)
Q Consensus 390 ~I~~l~~s--p~~-~l~s~s~Dg~V~lwdl~~~--~~l--~~~~h~~~V~sv~fsp~d--~~---~l~sgs~Dg~I~Iwd 457 (531)
..++++++ ... +||.+++...|.||-.... +.. ....+...|.+|+|-+.+ +. ++++++..|.+.+|+
T Consensus 165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 68888888 555 7788888888888765432 111 122367789999998743 22 788899999999988
Q ss_pred C
Q 009614 458 V 458 (531)
Q Consensus 458 ~ 458 (531)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 7
No 409
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.34 E-value=3.9 Score=40.55 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=70.0
Q ss_pred ccccceeeeCCCCeEEeeec-CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC-cEEEEEc
Q 009614 236 DRHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKV 313 (531)
Q Consensus 236 ~~~~s~~fspdg~~lasgs~-dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-~I~iWd~ 313 (531)
...+.++||||++.+..... .+.|.-+++...............+..+.+.--.++...+|.+.+++..+| .|.+|+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 34456999999987766644 488888888742111111111122333456667788888888776555554 8999998
Q ss_pred ccCccccceecCCCCCeeEEEeecCCcceee
Q 009614 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIP 344 (531)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (531)
. ++.+..+..+...+.++.|--.....++.
T Consensus 243 d-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 243 D-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred C-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 8 88888888886667776665554444443
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.29 E-value=1.7 Score=40.74 Aligned_cols=74 Identities=11% Similarity=0.212 Sum_probs=54.7
Q ss_pred CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--------ec-------CCCCceEEEEEccCCCEEEEEeCCC
Q 009614 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------YT-------DIREIVSAVCYCPDGKGGIVGTMTG 492 (531)
Q Consensus 428 ~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--------~~-------~~~~~v~~v~~spdg~~l~sgs~dg 492 (531)
..++..+. . .+.++++-+.+|.+++||+.+++.+. +. .....|..+.++.+|.-|++-+ +|
T Consensus 12 gs~~~~l~--~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 12 GSPVSFLE--C-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred CCceEEEE--e-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 34444444 3 67899999999999999999987652 11 3556789999999998777665 68
Q ss_pred cEEEEeCCCCeEE
Q 009614 493 NCRFYDIKDNQLY 505 (531)
Q Consensus 493 ~I~iwd~~~~~l~ 505 (531)
..+.|+..-+.-+
T Consensus 88 ~~y~y~~~L~~W~ 100 (219)
T PF07569_consen 88 DSYSYSPDLGCWI 100 (219)
T ss_pred CEEEeccccceeE
Confidence 8999988755443
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.11 E-value=5.5 Score=38.34 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=69.5
Q ss_pred CeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe-CCCC--eEE
Q 009614 390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRC--QVV 464 (531)
Q Consensus 390 ~I~~l~~sp~~-~l~s~s-~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd-~~~~--~~~ 464 (531)
.+...++++++ .++... .++.-.||-...+...........++.-.|++ ++...+....+...+++. ...+ ..+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68899999999 444433 33333444444444333332344788889999 777777777677777774 3333 222
Q ss_pred --EecCCCCceEEEEEccCCCEEEEEe---CCCcEEEEeCC
Q 009614 465 --DYTDIREIVSAVCYCPDGKGGIVGT---MTGNCRFYDIK 500 (531)
Q Consensus 465 --~~~~~~~~v~~v~~spdg~~l~sgs---~dg~I~iwd~~ 500 (531)
.+......|+.+.++|||..++... .++.|.+--+.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 2332233899999999999887765 35677776553
No 412
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.12 E-value=4.4 Score=38.91 Aligned_cols=119 Identities=12% Similarity=0.150 Sum_probs=81.3
Q ss_pred eEEEEcCCC--eEEEEeCCCc-EEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCC-----CeEEEEeCCC
Q 009614 392 LDLSWSKNG--FLLSSSADKT-VRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRR 460 (531)
Q Consensus 392 ~~l~~sp~~--~l~s~s~Dg~-V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~D-----g~I~Iwd~~~ 460 (531)
..|+++|.- -++.+-.-|+ ..++|....+...++. ....---=+|+| |+.+|++.-.| |.|-|||.+.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 356777765 4555555555 5688888877766653 111222346999 99999886544 6899999986
Q ss_pred Ce--EEEecCCCCceEEEEEccCCCEEEEEeC------------------CCcEEEEeCCCCeEEEEeeee
Q 009614 461 CQ--VVDYTDIREIVSAVCYCPDGKGGIVGTM------------------TGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 461 ~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~------------------dg~I~iwd~~~~~l~~~~~~~ 511 (531)
+- +-.+..|.-....+.|.+||+.++++.. .-.+.+.|..+|+++++..++
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp 220 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP 220 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc
Confidence 42 3357778778889999999999988643 123566777778877766544
No 413
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.78 E-value=0.69 Score=50.69 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=57.4
Q ss_pred EcCCC-eEEEEeCCCcEEEEECC-----CCeEEEEee-cC-CceEEEEEeeC--------CCCEEEEEeC-CCeEEEEeC
Q 009614 396 WSKNG-FLLSSSADKTVRLWQVG-----IDRCLRVFS-HN-NYVTSVAFNPV--------DDNYFISGSI-DGKVRIWEV 458 (531)
Q Consensus 396 ~sp~~-~l~s~s~Dg~V~lwdl~-----~~~~l~~~~-h~-~~V~sv~fsp~--------d~~~l~sgs~-Dg~I~Iwd~ 458 (531)
.+||| .++.++.||.++.|.+. .-.|+..+. |. .+-.|.-++.. .-.++++++. ...+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 78999 99999999999998764 223444443 43 33333323320 0124455543 456888888
Q ss_pred CCCeEEEecCCCCceEEEEEccCCCE------------EEEEeCCCcEEEEeC
Q 009614 459 RRCQVVDYTDIREIVSAVCYCPDGKG------------GIVGTMTGNCRFYDI 499 (531)
Q Consensus 459 ~~~~~~~~~~~~~~v~~v~~spdg~~------------l~sgs~dg~I~iwd~ 499 (531)
...+++ +....+.|..|. -+||.. ++.-+-++.|.+|.-
T Consensus 323 a~w~Cl-l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 323 APWQCL-LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred cchhhh-hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 776665 222334444444 333321 234555777878753
No 414
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.67 E-value=1.4 Score=29.33 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=26.5
Q ss_pred CceEEEEEccCC---CEEEEEeCCCcEEEEeCCCC
Q 009614 471 EIVSAVCYCPDG---KGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 471 ~~v~~v~~spdg---~~l~sgs~dg~I~iwd~~~~ 502 (531)
+.|.++.|+|+. .+|+.+-.-|.|+|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999854 48888888899999999964
No 415
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.65 E-value=23 Score=38.46 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=66.2
Q ss_pred CC-eEEEEeCCCc-----EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC------eEEEEeCCCCeEEEe
Q 009614 399 NG-FLLSSSADKT-----VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG------KVRIWEVRRCQVVDY 466 (531)
Q Consensus 399 ~~-~l~s~s~Dg~-----V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg------~I~Iwd~~~~~~~~~ 466 (531)
+| ..+.|+.||. |-.||..+.+.-..-.......+......++.+.++|+.++ +|..||..+.+....
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 34 7778888754 77788877665444433334444444443788888888664 577888888765532
Q ss_pred cCC---CCceEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCeEEEE
Q 009614 467 TDI---REIVSAVCYCPDGKGGIVGTMTGN-----CRFYDIKDNQLYQQ 507 (531)
Q Consensus 467 ~~~---~~~v~~v~~spdg~~l~sgs~dg~-----I~iwd~~~~~l~~~ 507 (531)
..- ..... ++ .-++.+.++|+.|+. |..||..+.+...-
T Consensus 460 ~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 460 APMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred CCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 211 11111 22 236778888888873 78899888776543
No 416
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.58 E-value=3.1 Score=48.00 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=46.1
Q ss_pred ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (531)
Q Consensus 385 ~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~ 463 (531)
.-|..++.+..+.....++.+..-+.+-+|+.........+.-.+ ..+.+ ++..++++..||.+..||...++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 195 SLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNG----QLESR-DGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccccceeeeecCCCcceeeeeeeeeehhcccccchhhccccc----ccCcc-CCceEEEEEecCCEEeeecCCCce
Confidence 334455555555444444555556667777655444443332111 11166 899999999999999999998754
No 417
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.28 E-value=13 Score=37.89 Aligned_cols=65 Identities=5% Similarity=0.038 Sum_probs=35.8
Q ss_pred cccceeeeCCCCeEEeee-----------cCC-eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614 237 RHGSATLKPGDHELTLGQ-----------RMR-RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (531)
Q Consensus 237 ~~~s~~fspdg~~lasgs-----------~dg-~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 304 (531)
....++|.++|+++++-. ..+ +|.+++-.+..-... ....+...-.....|++.++| +++ +..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---KSNVFAEELSMVTGLAVAVGG-VYV-ATP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---eeEEeecCCCCccceeEecCC-EEE-eCC
Confidence 344689999999887742 223 777775432211110 111232233456889999888 444 444
Q ss_pred CC
Q 009614 305 DG 306 (531)
Q Consensus 305 Dg 306 (531)
..
T Consensus 90 ~~ 91 (367)
T TIGR02604 90 PD 91 (367)
T ss_pred Ce
Confidence 43
No 418
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.22 E-value=44 Score=37.77 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=50.8
Q ss_pred cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec----CC----------------CCceEEEEEccCCCEEE
Q 009614 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DI----------------REIVSAVCYCPDGKGGI 486 (531)
Q Consensus 427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~----~~----------------~~~v~~v~~spdg~~l~ 486 (531)
....|.+|+... -+.+++..-.||+|.++|..+.+.+... .. -..+..++|||.+..++
T Consensus 258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 446677888776 6778999999999999999886544222 11 11334588999999999
Q ss_pred EEeCCCcEE
Q 009614 487 VGTMTGNCR 495 (531)
Q Consensus 487 sgs~dg~I~ 495 (531)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 999999866
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.04 E-value=22 Score=34.13 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=41.8
Q ss_pred cccceeeeCCCCeEEeee---cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614 237 RHGSATLKPGDHELTLGQ---RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (531)
Q Consensus 237 ~~~s~~fspdg~~lasgs---~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 312 (531)
...+.++++++..+|.-. ....++++......... +.+ ..+..-.|++++...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--------~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--------LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--------ccC--CccccccccCCCCEEEEEcCCCceEEEE
Confidence 345689999999887654 44556666554322211 122 3677889999987666666666666664
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.75 E-value=0.073 Score=57.84 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=46.9
Q ss_pred eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEE-----------EccCCCEEEEEeCCCcEEEE
Q 009614 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK-----------FSLDGQYLASGGEDGTVRVW 311 (531)
Q Consensus 243 fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~-----------fspdg~~Lasgs~Dg~I~iW 311 (531)
|-++.-++..+-+++.|++.++..... ..+.+|...+..++ .+|||+.||.+..||.++.|
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR--------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH--------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 445666777888899999988774433 12456776666654 58899999999999999988
Q ss_pred Ecc
Q 009614 312 KVI 314 (531)
Q Consensus 312 d~~ 314 (531)
.+.
T Consensus 263 Qiy 265 (1283)
T KOG1916|consen 263 QIY 265 (1283)
T ss_pred eee
Confidence 763
No 421
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.61 E-value=12 Score=34.58 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=69.4
Q ss_pred eEEEEcCCCeEEEEeCCCcEEEEECC--CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---C---eEEEE---eCC-
Q 009614 392 LDLSWSKNGFLLSSSADKTVRLWQVG--IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---G---KVRIW---EVR- 459 (531)
Q Consensus 392 ~~l~~sp~~~l~s~s~Dg~V~lwdl~--~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g---~I~Iw---d~~- 459 (531)
..+.-.+.+.|+.+.....|.+|++. ..+.+..|..-+.|..+.++. .|+|+++--.+ . .+|+| ...
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 33444443434333556779999988 445667777779999999999 89999985332 2 56665 221
Q ss_pred -CCeEE--EecC---------------------CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614 460 -RCQVV--DYTD---------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (531)
Q Consensus 460 -~~~~~--~~~~---------------------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l 504 (531)
..+.+ ...+ ...++.+++..|-.--|++|+ ++++.||.+..+..
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 11111 1112 234677888888544456665 56799998875544
No 422
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.60 E-value=6.5 Score=42.28 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=71.5
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEEeecCCc--eEE----------EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY--VTS----------VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (531)
Q Consensus 399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~--V~s----------v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~ 466 (531)
++.++.++.++.|.-.|..+++.+..+..... +.. +++ .+..++.++.|+.|.-.|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 45777888889999999999999888753221 111 222 235677788899999999999998732
Q ss_pred cCCCC--ceEEEEEcc---CCCEEEEEeC------CCcEEEEeCCCCeEEEEeeee
Q 009614 467 TDIRE--IVSAVCYCP---DGKGGIVGTM------TGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 467 ~~~~~--~v~~v~~sp---dg~~l~sgs~------dg~I~iwd~~~~~l~~~~~~~ 511 (531)
..... .-..+.-+| ++ .|+++.. +|.|+-+|+.+|+++.++...
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 21110 001111112 44 4555442 689999999999999877643
No 423
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.44 E-value=2.7 Score=39.42 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=54.5
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-------AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-------~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 313 (531)
+.+..++.++++-+.+|.+++||+.+.+..+........+. .....|..+.++.+|.-|++-+ +|....|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 45677899999999999999999998876655422221222 3567899999999998777654 578899986
Q ss_pred cc
Q 009614 314 IE 315 (531)
Q Consensus 314 ~~ 315 (531)
.-
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 43
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.09 E-value=14 Score=40.09 Aligned_cols=70 Identities=14% Similarity=0.275 Sum_probs=46.4
Q ss_pred CCCCeeEEEEcC--CC-eEEEEeCCCcEEEEECC---------CCeEEEEee---c-CCceEEEEEeeCCCCEEEEEeCC
Q 009614 387 HSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVG---------IDRCLRVFS---H-NNYVTSVAFNPVDDNYFISGSID 450 (531)
Q Consensus 387 h~~~I~~l~~sp--~~-~l~s~s~Dg~V~lwdl~---------~~~~l~~~~---h-~~~V~sv~fsp~d~~~l~sgs~D 450 (531)
..+.|.++.|.. ++ .+++.+....|.+|--. +-.+++.+. + +.+|.+..|.+ +|.+++.+ +
T Consensus 71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--G 147 (631)
T PF12234_consen 71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--G 147 (631)
T ss_pred CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--C
Confidence 456788888864 45 77777778888888531 122344442 3 37899999998 77655544 3
Q ss_pred CeEEEEeCC
Q 009614 451 GKVRIWEVR 459 (531)
Q Consensus 451 g~I~Iwd~~ 459 (531)
..+.|+|-.
T Consensus 148 Nqlfv~dk~ 156 (631)
T PF12234_consen 148 NQLFVFDKW 156 (631)
T ss_pred CEEEEECCC
Confidence 578888754
No 425
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.60 E-value=18 Score=35.35 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=70.1
Q ss_pred CcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEe------CCCeEEEEeCCCCeEEEecC-----CCCceEEE
Q 009614 409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS------IDGKVRIWEVRRCQVVDYTD-----IREIVSAV 476 (531)
Q Consensus 409 g~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs------~Dg~I~Iwd~~~~~~~~~~~-----~~~~v~~v 476 (531)
..|++||..+.+....-. -.+.|+.|.|.. +.+++++|. ....+..||..+.....+.. ..++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 459999998877665543 567899999986 667777764 35578999999887654443 34778888
Q ss_pred EEcc-CCC-EEEEEe-CCCc--EEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEeeC
Q 009614 477 CYCP-DGK-GGIVGT-MTGN--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI 531 (531)
Q Consensus 477 ~~sp-dg~-~l~sgs-~dg~--I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p~ 531 (531)
.+.. |+. ..+.|. .+|. |..||=. +.. ..... --..+..|.++++.|+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs--~W~-~i~~~----~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGS--SWS-SIGSD----ILGSGTTIRGLQVLPL 147 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCC--ceE-ecccc----ccCCCCEEEEEEEEec
Confidence 7743 343 344443 3444 5555432 221 11110 1122467777777664
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.35 E-value=28 Score=34.36 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=62.7
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC-CCCe
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQ 462 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~-~~~~ 462 (531)
.-.+.+..+..+++| ++++++.-....-||-........- .....|..|.|.| ++.+.+.+ ..|.|+.=+. ....
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCcc
Confidence 345778888889999 5656555555567776543333222 3578899999999 77766654 8888888772 2222
Q ss_pred EEE-----ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614 463 VVD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (531)
Q Consensus 463 ~~~-----~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l 504 (531)
... .....-.+..++|.+++...++|+ .|.+ +.....|+-
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGkt 264 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKT 264 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCcc
Confidence 211 111223478999999988777666 4533 555666654
No 427
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.31 E-value=58 Score=36.93 Aligned_cols=248 Identities=11% Similarity=0.128 Sum_probs=115.6
Q ss_pred eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc-
Q 009614 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL- 319 (531)
Q Consensus 241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~- 319 (531)
...++++...+.|..+|.+...-+.-.....+...+..++.+...-..|+..-++| .|.+|+.-|-=++-.+.+....
T Consensus 263 ~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~g 341 (1096)
T KOG1897|consen 263 GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVG 341 (1096)
T ss_pred ccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCC
Confidence 35677888888999999887765552222222222333455666666777777666 7888888776666665443221
Q ss_pred ------cceecCCCCCeeEEEeecCCcceeeeecccccccccccc-ccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614 320 ------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL-RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (531)
Q Consensus 320 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 392 (531)
.++... .++.-+. .++.+.......... ....++...+.-... .+.+.....+.| -..++
T Consensus 342 sy~~ilet~~NL-gPI~Dm~----------Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi-~I~e~A~i~l~G-ikg~w 408 (1096)
T KOG1897|consen 342 SYVVILETFVNL-GPIVDMC----------VVDLDRQGQGQIVTCSGAFKDGSLRIIRNGI-GIDELASIDLPG-IKGMW 408 (1096)
T ss_pred chhhhhhhcccc-cceeeEE----------EEeccccCCceEEEEeCCCCCCcEEEEeccc-ccceeeEeecCC-cccee
Confidence 111110 1111111 111111011111111 122233333332211 111112223333 34556
Q ss_pred EEE--EcCC--CeEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614 393 DLS--WSKN--GFLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (531)
Q Consensus 393 ~l~--~sp~--~~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~ 466 (531)
.+. +.++ .+|+.+--+- -++..+... ...+. ........+..+-..++.|+=... ..||+++-. +..-.|
T Consensus 409 ~lk~~v~~~~d~ylvlsf~~e-Trvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W 484 (1096)
T KOG1897|consen 409 SLKSMVDENYDNYLVLSFISE-TRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEW 484 (1096)
T ss_pred EeeccccccCCcEEEEEeccc-eEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcc
Confidence 665 4333 2444443333 344444332 11111 122333444444434444433332 357777765 333345
Q ss_pred cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~ 507 (531)
..... ++....+.+...++.++.++.+...++..+.+.+.
T Consensus 485 ~~p~~-~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~ 524 (1096)
T KOG1897|consen 485 RPPGK-ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV 524 (1096)
T ss_pred cCCCc-eEEEEEeecceEEEEecCccEEEEEEeeccceeee
Confidence 44433 34444444555777887778787778877764443
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=86.95 E-value=33 Score=34.45 Aligned_cols=106 Identities=10% Similarity=0.108 Sum_probs=60.1
Q ss_pred CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (531)
Q Consensus 389 ~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~ 463 (531)
..++++.+.+++.++..+..|.+++=....+..-.... ....+..+.+.| ++..+++| .+|.|. .....++-
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~G~t 291 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDGGKT 291 (334)
T ss_pred ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCCCCC
Confidence 46778888888844444556766532233333222111 124578899998 66655554 566554 34444333
Q ss_pred EEe----cCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614 464 VDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 464 ~~~----~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 498 (531)
... .......+.+.|..+++.+++| ..|.|--|+
T Consensus 292 W~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 292 WEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred CeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 221 2233467888888777765554 578777665
No 429
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=86.61 E-value=27 Score=35.49 Aligned_cols=106 Identities=10% Similarity=0.081 Sum_probs=55.7
Q ss_pred EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEee-CCCCEEEEEe----------------------C
Q 009614 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP-VDDNYFISGS----------------------I 449 (531)
Q Consensus 395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp-~d~~~l~sgs----------------------~ 449 (531)
.++|+. .++-......|+-.|+.+.+....+. ....+-...|.. .++..++-.- -
T Consensus 87 ~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 87 FLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred EEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 344555 44434445677777887776655555 344444455542 2444433211 1
Q ss_pred CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCc-----EEEEeCC
Q 009614 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN-----CRFYDIK 500 (531)
Q Consensus 450 Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~-----I~iwd~~ 500 (531)
...|.--|+.+++...+......+..+.|+|....+++-+..|- -|||-++
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred CceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 12455667888877766677778889999997766666555441 3666543
No 430
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.74 E-value=39 Score=33.40 Aligned_cols=107 Identities=12% Similarity=0.210 Sum_probs=57.5
Q ss_pred CCCCeeEEEEcCCCeEEEEeCCCcEEEEECC-CCeEEEE----ee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG-IDRCLRV----FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 387 h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~-~~~~l~~----~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
....|..|.|.|++.|......|.|+.=+.. ....... .. ....+..++|.+ +...+++|+. |.+ +.....
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~-G~l-~~S~Dg 261 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGS-GTL-LVSTDG 261 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEEST-T-E-EEESST
T ss_pred ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeCC-ccE-EEeCCC
Confidence 3567899999999955555588888887722 1111111 11 223478999998 7777776654 433 334455
Q ss_pred CeEEE----ecCCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614 461 CQVVD----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (531)
Q Consensus 461 ~~~~~----~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 497 (531)
++--. .......++.|.|.++.+.+|.|. +|.|--|
T Consensus 262 GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~-~G~ll~~ 301 (302)
T PF14870_consen 262 GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ-DGVLLRY 301 (302)
T ss_dssp TSS-EE-GGGTTSSS---EEEEEETTEEEEE-S-TTEEEEE
T ss_pred CccceECccccCCCCceEEEEEcCCCceEEECC-CcEEEEe
Confidence 54332 223455688999987766666654 7776544
No 431
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.68 E-value=23 Score=32.61 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=54.0
Q ss_pred cccCCCceEEEeCCccccccCcceeEeecC-CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee----------
Q 009614 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------- 426 (531)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~---------- 426 (531)
+...+...+..-+++.+....+...++.+. -..++-+.|-.....+-.=.+..|...|..+|+.+..+.
T Consensus 144 imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~ 223 (262)
T COG3823 144 IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNL 223 (262)
T ss_pred EeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCc
Confidence 444555566667777777666655555552 234555666432233333344556666777777666542
Q ss_pred ---cCCceEEEEEeeCCCCEEEEE
Q 009614 427 ---HNNYVTSVAFNPVDDNYFISG 447 (531)
Q Consensus 427 ---h~~~V~sv~fsp~d~~~l~sg 447 (531)
+.+-.+.|++.|..++++++|
T Consensus 224 ~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 224 DKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccccceeecCcCCeEEEec
Confidence 445678999999555677776
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=14 Score=37.93 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccc--ee
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG--FD 323 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~--~~ 323 (531)
|.+..+.+...|.+.-|-++........- --....++|.+++||+|.+.||.--.|++|.+.+....+.... ..
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiS----fdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ 107 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPIS----FDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE 107 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCce----eeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH
Confidence 44444444455667777766544332211 1123567999999999999999999999999999844332221 11
Q ss_pred cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---
Q 009614 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--- 400 (531)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--- 400 (531)
........+-|.+.+...++.+...+ ..++...+. ...++..+.|...|+-..|.++.
T Consensus 108 ck~k~~~IlGF~W~~s~e~A~i~~~G--------------~e~y~v~pe-----krslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 108 CKTKNANILGFCWTSSTEIAFITDQG--------------IEFYQVLPE-----KRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hccCcceeEEEEEecCeeEEEEecCC--------------eEEEEEchh-----hhhhhhhhhcccCccEEEEccccceE
Confidence 22222223333333333333222111 111111111 11244456677888888888876
Q ss_pred eEEEEeCCCcEEEEECCCCe
Q 009614 401 FLLSSSADKTVRLWQVGIDR 420 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~ 420 (531)
+|+++-..+++.=+.++++.
T Consensus 169 LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 169 LLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred eeeccccccccccEEEeece
Confidence 33333245555555554443
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.98 E-value=7.5 Score=40.38 Aligned_cols=60 Identities=12% Similarity=0.248 Sum_probs=47.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614 440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (531)
Q Consensus 440 d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 500 (531)
...|+|+++..|-|++||.-..+.- .+.+....|..|..+.+|++|++.+ ...+.+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 4568999999999999997654433 3667788899999999999888777 4567777764
No 434
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.60 E-value=15 Score=38.49 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=56.2
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCc
Q 009614 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (531)
Q Consensus 285 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (531)
-.|..|..++.|..++-+|.+|.+.++=.+....-..+......+.|-.+....
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-------------------------- 157 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-------------------------- 157 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc--------------------------
Confidence 357788899999999999999976655332222222222222222222211110
Q ss_pred eEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEE
Q 009614 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCL 422 (531)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~----~l~s~s~Dg~V~lwdl~~~~~l 422 (531)
.+.+-. ..-.+...+|+|+. .|+.-+.|.+||+||+...+.+
T Consensus 158 ---------------~~ftss-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 158 ---------------RFFTSS-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ---------------eeeccC-CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 011111 22346778899975 7888889999999999754433
No 435
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.46 E-value=19 Score=36.15 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=57.3
Q ss_pred CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE---EEEee-----cCCceEEEEEeeC---CCCEEEEEeCC--------
Q 009614 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRVFS-----HNNYVTSVAFNPV---DDNYFISGSID-------- 450 (531)
Q Consensus 390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~---l~~~~-----h~~~V~sv~fsp~---d~~~l~sgs~D-------- 450 (531)
..+.|+|.|+|.++.+...|.|++++ ..+.. +.... .......++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999666677799999999 44433 22221 3456799999992 13333333321
Q ss_pred CeEEEEeCCCC-------eEE-E-ec---CCCCceEEEEEccCCCEEEEEeCCCc
Q 009614 451 GKVRIWEVRRC-------QVV-D-YT---DIREIVSAVCYCPDGKGGIVGTMTGN 493 (531)
Q Consensus 451 g~I~Iwd~~~~-------~~~-~-~~---~~~~~v~~v~~spdg~~l~sgs~dg~ 493 (531)
..|.-|..... +.+ . .. ........|.|.|||.+.++.+..+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 23444444332 111 1 12 23345677999999977776665443
No 436
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=83.29 E-value=25 Score=34.60 Aligned_cols=106 Identities=8% Similarity=0.062 Sum_probs=70.5
Q ss_pred EEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC-
Q 009614 413 LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT- 491 (531)
Q Consensus 413 lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d- 491 (531)
++|+.+++.+..= -....+-.|+ ++++.++-+..|.|.-+|..+++........+-...++|. |.++++|-..
T Consensus 189 vidv~s~evl~~G--LsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~ 262 (335)
T TIGR03032 189 VIDIPSGEVVASG--LSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKL 262 (335)
T ss_pred EEEeCCCCEEEcC--ccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccc
Confidence 3566666554221 1112234565 6888889899999999999988776656666677888887 8888776542
Q ss_pred -------------------CcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614 492 -------------------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK 530 (531)
Q Consensus 492 -------------------g~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p 530 (531)
--|.+.|+++|..+.-+++.-. ...|..+++-|
T Consensus 263 R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~------v~EifdV~vLP 314 (335)
T TIGR03032 263 RESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGV------IEEIYDVAVLP 314 (335)
T ss_pred cCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCc------eeEEEEEEEec
Confidence 1267889999998887765422 24556665544
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=82.96 E-value=69 Score=34.02 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=52.4
Q ss_pred eEEEEeCC---CcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC---CCc
Q 009614 401 FLLSSSAD---KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI---REI 472 (531)
Q Consensus 401 ~l~s~s~D---g~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~---~~~ 472 (531)
..+.|+.+ ..+..||..+.+....-. ..-.-.+++. - ++.+.+.| |.+.+||..+.+-...... ...
T Consensus 365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~-~-~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV-F-GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE-E-CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc
Confidence 44455543 346788887766544322 1111112222 2 56666666 3578899887765432221 112
Q ss_pred eEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeE
Q 009614 473 VSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQL 504 (531)
Q Consensus 473 v~~v~~spdg~~l~sgs~d-----g~I~iwd~~~~~l 504 (531)
...+ .-+|+..++|+.+ ..+..||..+++-
T Consensus 440 ~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 440 PELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred cEEE--EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 2222 2377888888764 3577888877654
No 438
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.02 E-value=11 Score=33.75 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=25.7
Q ss_pred CCeeEEEEcCCC-------eEEEEeCCCcEEEEECCC
Q 009614 389 SEVLDLSWSKNG-------FLLSSSADKTVRLWQVGI 418 (531)
Q Consensus 389 ~~I~~l~~sp~~-------~l~s~s~Dg~V~lwdl~~ 418 (531)
..|..++|+|.| +|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 789999999999998764
No 439
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.66 E-value=5.3 Score=43.22 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCCCeEEeeecCCeEEEEeCCCCc---cccccc-cc----ceEEc-----------ccCCCEEEEEEcc----CCCEEEE
Q 009614 245 PGDHELTLGQRMRRVRVHPVKKQS---RELSSL-YT----GQEFL-----------AHEGSILTMKFSL----DGQYLAS 301 (531)
Q Consensus 245 pdg~~lasgs~dg~I~vwd~~~~~---~~~~~~-~~----~~~l~-----------~H~~~I~~l~fsp----dg~~Las 301 (531)
++...++.+..||.+......... ...... +. .+.+. .-.+.+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466778888888888777666411 111000 00 00011 1124456666666 6779999
Q ss_pred EeCCCcEEEEEcccCccccceecC
Q 009614 302 GGEDGTVRVWKVIEHERLDGFDVQ 325 (531)
Q Consensus 302 gs~Dg~I~iWd~~~~~~~~~~~~~ 325 (531)
.+.|+++|+||+.+++++......
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEETT
T ss_pred EeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999987666544
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.49 E-value=0.25 Score=50.45 Aligned_cols=95 Identities=13% Similarity=0.271 Sum_probs=69.5
Q ss_pred CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEE-ee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRV-FS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (531)
Q Consensus 388 ~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~-~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~ 462 (531)
++...+++|..++ .++.+-..+.+.+||+.+...... +. |.... +.|++ ....++.|-..|.+.|++..+.+
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchh
Confidence 4456677888777 666777789999999976432211 11 33322 67888 77888888899999999999877
Q ss_pred EEEecC-CCCceEEEEEccCCCEE
Q 009614 463 VVDYTD-IREIVSAVCYCPDGKGG 485 (531)
Q Consensus 463 ~~~~~~-~~~~v~~v~~spdg~~l 485 (531)
..-..+ |...+++++|.+.+..+
T Consensus 151 ~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 151 RIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred hhhhhcccccceeEEEecccceee
Confidence 665444 88999999999987543
No 441
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.19 E-value=3.2 Score=44.74 Aligned_cols=81 Identities=12% Similarity=0.205 Sum_probs=56.5
Q ss_pred cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (531)
Q Consensus 427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~ 506 (531)
....+++|+-+| .++-++.++.||.|++|+....+..+......+-..+.|...| |++++.|..+.-|.- +|-.++
T Consensus 13 ~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~-dgvvqq 88 (1636)
T KOG3616|consen 13 EDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKE-DGVVQQ 88 (1636)
T ss_pred ccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeec-cCcchh
Confidence 456688999999 8999999999999999998765544333333344556666554 677777888877863 354555
Q ss_pred Eeeee
Q 009614 507 QNQIC 511 (531)
Q Consensus 507 ~~~~~ 511 (531)
++...
T Consensus 89 qfdyn 93 (1636)
T KOG3616|consen 89 QFDYN 93 (1636)
T ss_pred hcccc
Confidence 55433
No 442
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=80.04 E-value=79 Score=32.82 Aligned_cols=147 Identities=13% Similarity=0.235 Sum_probs=88.1
Q ss_pred ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC---C-C-eEEEEeCCCcEEEEECCC--C------
Q 009614 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK---N-G-FLLSSSADKTVRLWQVGI--D------ 419 (531)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp---~-~-~l~s~s~Dg~V~lwdl~~--~------ 419 (531)
.....+.++..+.+.++.+.........+..-..-..+|..|..-+ . . ..++-=.-+.+.+|.+.. +
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3445567788888888888543332222222223456788877543 1 1 333334556778887731 1
Q ss_pred --eEEEEeecC--CceEEEEEeeC---C-CCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC
Q 009614 420 --RCLRVFSHN--NYVTSVAFNPV---D-DNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (531)
Q Consensus 420 --~~l~~~~h~--~~V~sv~fsp~---d-~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d 491 (531)
+....+.|. .....++.-|. . ..+|.+-+.||.+.+|+-............--...++|.|.-..+++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 111222333 23344444442 2 468888999999999998876544433333344557888888889999888
Q ss_pred CcEEEEeC
Q 009614 492 GNCRFYDI 499 (531)
Q Consensus 492 g~I~iwd~ 499 (531)
..+.-|..
T Consensus 196 ~~l~~Yky 203 (418)
T PF14727_consen 196 WTLECYKY 203 (418)
T ss_pred eeEEEecH
Confidence 88888875
No 443
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.45 E-value=17 Score=42.17 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=50.5
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEEEECC----CC---e-E-----------------EEEe-ecCCceEEEEEeeCCC
Q 009614 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVG----ID---R-C-----------------LRVF-SHNNYVTSVAFNPVDD 441 (531)
Q Consensus 388 ~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~----~~---~-~-----------------l~~~-~h~~~V~sv~fsp~d~ 441 (531)
...|+|+....+|.+..++.|| .||.+. .+ + | +..+ .+..+|..|.... ..
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-SR 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-cc
Confidence 4568889877788777777777 455431 11 1 1 1112 2567999999987 77
Q ss_pred CEEEEEeCCCeEEEEeCCC
Q 009614 442 NYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 442 ~~l~sgs~Dg~I~Iwd~~~ 460 (531)
+++++-+..|+|++||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999976
No 444
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.43 E-value=7.6 Score=42.03 Aligned_cols=71 Identities=8% Similarity=0.116 Sum_probs=44.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCC----CeEEE---ec--------------------CCCCceEEEEEcc----CCCEEEEE
Q 009614 440 DDNYFISGSIDGKVRIWEVRR----CQVVD---YT--------------------DIREIVSAVCYCP----DGKGGIVG 488 (531)
Q Consensus 440 d~~~l~sgs~Dg~I~Iwd~~~----~~~~~---~~--------------------~~~~~v~~v~~sp----dg~~l~sg 488 (531)
+...|+.+..||.+....... +.... .. .....+..++.++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556777777788777776653 11110 10 0123455666666 77899999
Q ss_pred eCCCcEEEEeCCCCeEEEEeee
Q 009614 489 TMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 489 s~dg~I~iwd~~~~~l~~~~~~ 510 (531)
+.|+++|+||+.+++++....+
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEET
T ss_pred eCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999999766543
No 445
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.30 E-value=36 Score=37.28 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=33.5
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (531)
Q Consensus 471 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~ 510 (531)
..+..+..+|+.++|+--..+|.|.+-+....+.+.++..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 5678889999999999999999999998887777766653
No 446
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.08 E-value=14 Score=33.22 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.7
Q ss_pred CceEEEEEccCC------CEEEEEeCCCcEEEEeCCCC
Q 009614 471 EIVSAVCYCPDG------KGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 471 ~~v~~v~~spdg------~~l~sgs~dg~I~iwd~~~~ 502 (531)
..+.+++|||-| -+|++-+.+|.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999954 47899999999999987744
No 447
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.07 E-value=30 Score=31.91 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=74.0
Q ss_pred eEEEEeC--CCcEEEEECCCCeEEEEeecC-CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEE
Q 009614 401 FLLSSSA--DKTVRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVC 477 (531)
Q Consensus 401 ~l~s~s~--Dg~V~lwdl~~~~~l~~~~h~-~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~ 477 (531)
++.+.+. ...|++||+.+++.+..-.-. ..+..=-.......+.+-.-.+|.-.++|.++.+.+......+.-+.++
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt 137 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLT 137 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeee
Confidence 5555543 356999999999887665422 1221111111012233334468888999999988886666666666666
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccc
Q 009614 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (531)
Q Consensus 478 ~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~k 516 (531)
. |++-|+.+....++++-|.++-..+.++++...|..
T Consensus 138 ~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p 174 (262)
T COG3823 138 S--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP 174 (262)
T ss_pred c--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCee
Confidence 4 555577776677788889888888888888777654
No 448
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.60 E-value=40 Score=39.19 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=27.1
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (531)
Q Consensus 285 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 317 (531)
.....++|+|.-.++|.+..+|.|+++-...-+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceE
Confidence 355678999999999999999999999764433
No 449
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=75.39 E-value=1.1e+02 Score=31.86 Aligned_cols=246 Identities=12% Similarity=0.066 Sum_probs=114.6
Q ss_pred CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEEcccCcccc
Q 009614 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-----DGQYLASGGEDGTVRVWKVIEHERLD 320 (531)
Q Consensus 246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-----dg~~Lasgs~Dg~I~iWd~~~~~~~~ 320 (531)
+...+++|+..|.++||+..........+..... -..+|..|+.-. +...||. -.-..+.||.+....-..
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~---l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ---LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe---cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 4468899999999999998654433222222111 246788877632 2223443 455677788772211000
Q ss_pred ceecCCCCCeeEEEeecCCcceeee----eccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614 321 GFDVQDTDPSCLYFTINHLSQLIPI----DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (531)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 396 (531)
.......+.....+.-...+. ..-++...+......+-|+.+.+++...+.... .+.+ .--...|.+
T Consensus 112 ----~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~----~lp~-~llPgPl~Y 182 (418)
T PF14727_consen 112 ----EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR----FLPD-FLLPGPLCY 182 (418)
T ss_pred ----ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE----EcCC-CCCCcCeEE
Confidence 000001111111111111111 111111112334455667777777766544311 1111 111223556
Q ss_pred cCCC-eEEEEeCCCcEEEEECCC--------------------Ce---EEEEeecCCceEEEEEeeC--CCCEEEEEeCC
Q 009614 397 SKNG-FLLSSSADKTVRLWQVGI--------------------DR---CLRVFSHNNYVTSVAFNPV--DDNYFISGSID 450 (531)
Q Consensus 397 sp~~-~l~s~s~Dg~V~lwdl~~--------------------~~---~l~~~~h~~~V~sv~fsp~--d~~~l~sgs~D 450 (531)
.+.. .|++++.+..|..|.... ++ +-.++.-...+..|..-.. ....+++-+ .
T Consensus 183 ~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-e 261 (418)
T PF14727_consen 183 CPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-E 261 (418)
T ss_pred eecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-c
Confidence 6655 888888888888886521 01 1122233444444444321 222333333 2
Q ss_pred CeEEEEeCCCCeEEEecCCCCceEEEE-E----ccCC---CEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614 451 GKVRIWEVRRCQVVDYTDIREIVSAVC-Y----CPDG---KGGIVGTMTGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 451 g~I~Iwd~~~~~~~~~~~~~~~v~~v~-~----spdg---~~l~sgs~dg~I~iwd~~~~~l~~~~ 508 (531)
.++...+-. |.+...........+++ | ..++ ..+++++.++.+.||.= .+++...
T Consensus 262 r~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA 324 (418)
T PF14727_consen 262 RSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSA 324 (418)
T ss_pred ceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEec
Confidence 455555553 44433222222222222 1 2222 25888999999999853 3444433
No 450
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=75.36 E-value=26 Score=36.19 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=52.6
Q ss_pred eEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeec--CCceEEEEEeeCC----------------CC
Q 009614 382 HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVD----------------DN 442 (531)
Q Consensus 382 ~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h--~~~V~sv~fsp~d----------------~~ 442 (531)
..+......+.+|..+|.+ +.++...=|.|.|+|+.++..++.++. ...+.=+...... ..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 3455566678999999999 556655669999999999888877751 1111111110000 11
Q ss_pred -EEEEEeCCCeEEEEeCCCCeEE
Q 009614 443 -YFISGSIDGKVRIWEVRRCQVV 464 (531)
Q Consensus 443 -~l~sgs~Dg~I~Iwd~~~~~~~ 464 (531)
+++-+-.-|.|.||.++++..+
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEE
Confidence 2333556788999999887765
No 451
>PRK10115 protease 2; Provisional
Probab=75.32 E-value=1.4e+02 Score=33.29 Aligned_cols=68 Identities=9% Similarity=0.021 Sum_probs=42.8
Q ss_pred ceeeeCCCCeEEe-----eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC------CcE
Q 009614 240 SATLKPGDHELTL-----GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------GTV 308 (531)
Q Consensus 240 s~~fspdg~~las-----gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D------g~I 308 (531)
...++|||++|+. |+..-.|++.++.++..... .+.+ . -..++|.+|++.|+-...+ ..|
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------LLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------cccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 4678999998876 44445688888875431111 1111 1 1458999999866655432 357
Q ss_pred EEEEcccC
Q 009614 309 RVWKVIEH 316 (531)
Q Consensus 309 ~iWd~~~~ 316 (531)
..+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 77777776
No 452
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=73.59 E-value=17 Score=33.65 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=39.9
Q ss_pred CEEEEEeCCCeEEEEeCCC--CeEEEecCCCCceEEEEEccCCCEEEEEeCCC------cEEEE
Q 009614 442 NYFISGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG------NCRFY 497 (531)
Q Consensus 442 ~~l~sgs~Dg~I~Iwd~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg------~I~iw 497 (531)
+.|..+....+|.+|++.+ .+++.....-+.|..+.++..|+||++-=.+. .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 3443335667899999983 45555555668899999999999999954332 56665
No 453
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=73.40 E-value=32 Score=35.54 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=54.9
Q ss_pred CEEEEEEccCCCEEEEEe--------------------CCCcEEEEEcccCccccceecCCCCCeeE--EEeecCCcc--
Q 009614 286 SILTMKFSLDGQYLASGG--------------------EDGTVRVWKVIEHERLDGFDVQDTDPSCL--YFTINHLSQ-- 341 (531)
Q Consensus 286 ~I~~l~fspdg~~Lasgs--------------------~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-- 341 (531)
--+.+-|.|..+.++|.. .-.++++||+.+.+.++.+.........+ .|..+....
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g 261 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG 261 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence 345667777777777753 24589999999999999998876543333 333332221
Q ss_pred eeeeeccccccccccccccCCCce-----EEEeCCcc---ccccCcceeEeecCCCCeeEEEEcCCC-eE-EEEeCCCcE
Q 009614 342 LIPIDVDKEKIDKTKSLRKSSDLT-----CVVLPPKV---FRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTV 411 (531)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l-~s~s~Dg~V 411 (531)
++......... .+....++. ++-.+... +.+ ...++.+..-..-|++|.+|.+. +| +++=.+|.|
T Consensus 262 Fvg~aLss~i~----~~~k~~~g~W~a~kVi~ip~~~v~~~~l-p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdv 336 (461)
T PF05694_consen 262 FVGCALSSSIW----RFYKDDDGEWAAEKVIDIPAKKVEGWIL-PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDV 336 (461)
T ss_dssp EEEEE--EEEE----EEEE-ETTEEEEEEEEEE--EE--SS----GGGGGG-EE------EEE-TTS-EEEEEETTTTEE
T ss_pred EEEEeccceEE----EEEEcCCCCeeeeEEEECCCcccCcccc-cccccccccCCCceEeEEEccCCCEEEEEcccCCcE
Confidence 11111111100 001101111 01111000 000 01111222224568999999998 44 455579999
Q ss_pred EEEECCCC
Q 009614 412 RLWQVGID 419 (531)
Q Consensus 412 ~lwdl~~~ 419 (531)
|.||+...
T Consensus 337 rqYDISDP 344 (461)
T PF05694_consen 337 RQYDISDP 344 (461)
T ss_dssp EEEE-SST
T ss_pred EEEecCCC
Confidence 99999753
No 454
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=72.27 E-value=1.2e+02 Score=31.20 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=62.4
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCe-----EEEEeec---CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-----CLRVFSH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (531)
Q Consensus 388 ~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~-----~l~~~~h---~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~ 459 (531)
...+..+.+.+++.++..+..|.+. |....++ ....... ...++.+.|.+ ++..+++| ..|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-C
Confidence 3457788888888555555666644 3444443 2222222 23588899987 66665554 667666653 4
Q ss_pred CCeEEEe----cCCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614 460 RCQVVDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (531)
Q Consensus 460 ~~~~~~~----~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 497 (531)
.++.-.. .......+.+.|.++++.+++|. +|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence 4443222 33456788999988877666654 6766544
No 455
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.23 E-value=1.6e+02 Score=32.54 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=37.4
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEee
Q 009614 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP 438 (531)
Q Consensus 388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp 438 (531)
...+..+.++|+. +|+-=...|.|.+-+....+++..+. ...+...++|.-
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 4567888999988 88888899999999988888877775 222223555543
No 456
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=71.85 E-value=65 Score=32.73 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=70.1
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEEeecC---CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC--c
Q 009614 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE--I 472 (531)
Q Consensus 398 p~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~---~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~--~ 472 (531)
-++.++.+..+|.|.-.|..++..+...... ..+.+-.+.. +++ ++.++.++.++.+|.++++.+-...... .
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 3557777788888888888888876544432 2333333333 454 7778888999999998887763222222 1
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
+..-..-.++ .+..++.+|.+.-.+..++++....+..
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~ 182 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETP 182 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecC
Confidence 1111222233 3444447899999999999988776654
No 457
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=71.63 E-value=16 Score=23.57 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=25.7
Q ss_pred CCCEEEE-EeCCCeEEEEeCCCCeEEEecCCCCceEEEEE
Q 009614 440 DDNYFIS-GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478 (531)
Q Consensus 440 d~~~l~s-gs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~ 478 (531)
++++|++ .-.++.|.++|..+++.+...........++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4554444 55688999999998887754444444455554
No 458
>PHA02713 hypothetical protein; Provisional
Probab=70.85 E-value=40 Score=36.62 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=57.5
Q ss_pred eEEEEeCC------CcEEEEECCCCeEEEEeecCCc--eEEEEEeeCCCCEEEEEeCCC-----eEEEEeCCCCeEEEec
Q 009614 401 FLLSSSAD------KTVRLWQVGIDRCLRVFSHNNY--VTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDYT 467 (531)
Q Consensus 401 ~l~s~s~D------g~V~lwdl~~~~~l~~~~h~~~--V~sv~fsp~d~~~l~sgs~Dg-----~I~Iwd~~~~~~~~~~ 467 (531)
.++.|+.+ ..+..||..++.....-.-..+ -.+++.. ++.+.+.|+.++ .+..||..+.+-....
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 55666643 3477889887765332221111 1122222 678888888764 4888998877544322
Q ss_pred CCCCceEE-EEEccCCCEEEEEeCCC-----------------------cEEEEeCCCCeEE
Q 009614 468 DIREIVSA-VCYCPDGKGGIVGTMTG-----------------------NCRFYDIKDNQLY 505 (531)
Q Consensus 468 ~~~~~v~~-v~~spdg~~l~sgs~dg-----------------------~I~iwd~~~~~l~ 505 (531)
....+... .+..-+|+..+.|+.++ .+..||..+++-.
T Consensus 384 ~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~ 445 (557)
T PHA02713 384 DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE 445 (557)
T ss_pred CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe
Confidence 22211111 11123778888887653 4778898877654
No 459
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.63 E-value=17 Score=23.13 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=20.6
Q ss_pred cCCCCceEEEEEccCCCEEEEEeC-C--CcEEEE
Q 009614 467 TDIREIVSAVCYCPDGKGGIVGTM-T--GNCRFY 497 (531)
Q Consensus 467 ~~~~~~v~~v~~spdg~~l~sgs~-d--g~I~iw 497 (531)
......-....|+|||++|+-.+. + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556788999999998877664 4 556665
No 460
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.50 E-value=9.8 Score=23.13 Aligned_cols=25 Identities=20% Similarity=0.204 Sum_probs=21.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614 484 GGIVGTMTGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 484 ~l~sgs~dg~I~iwd~~~~~l~~~~ 508 (531)
.+++++.+|.++.+|..+|+++.+.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6788889999999999999987653
No 461
>PRK13684 Ycf48-like protein; Provisional
Probab=70.29 E-value=77 Score=31.82 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCCeeEEEEcCCCeEEEEeCCCcEEE-EECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614 388 SSEVLDLSWSKNGFLLSSSADKTVRL-WQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (531)
Q Consensus 388 ~~~I~~l~~sp~~~l~s~s~Dg~V~l-wdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~ 465 (531)
.+.+.++.+.|++.++..+..|.+.. ++-......... .....++++.+.| ++..+++| ..|.+++=....+....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 45688899999885555555565443 222211222221 2446789999999 77777665 45766532334433222
Q ss_pred ---ec--CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 466 ---YT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 466 ---~~--~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
.. .....+.++.+.|++..+++| .+|.+. .....++
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~ 290 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGK 290 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCC
Confidence 11 122457889999988755544 567554 3444443
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.71 E-value=21 Score=22.94 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=24.6
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEE
Q 009614 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAF 436 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~f 436 (531)
.+++...+++|.++|..+++.+..+.-......++|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 444455688999999999888877764443444444
No 463
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=69.25 E-value=2.1e+02 Score=32.52 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=71.2
Q ss_pred CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe-----EEEEe-ecC----------CceEEEEEeeCCCCEEEEEeCC
Q 009614 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVF-SHN----------NYVTSVAFNPVDDNYFISGSID 450 (531)
Q Consensus 389 ~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~-----~l~~~-~h~----------~~V~sv~fsp~d~~~l~sgs~D 450 (531)
.+..+++|+|.. .||.....|...||++.... .+... .+. +.-..|.|.+ +.+.|+.++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r- 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR- 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-
Confidence 367899999976 99999999999999992111 11111 111 2234788887 6677777654
Q ss_pred CeEEEEeCCCCeEE---EecCCCCceEEEEEccC--CCEEEEEeCCCcEEEEeCCC
Q 009614 451 GKVRIWEVRRCQVV---DYTDIREIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKD 501 (531)
Q Consensus 451 g~I~Iwd~~~~~~~---~~~~~~~~v~~v~~spd--g~~l~sgs~dg~I~iwd~~~ 501 (531)
.++.++|+.+.... ........|..+.-+|+ +..++. + ...|-+.++..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-T-s~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-T-SKEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-e-cCeEEEEEccC
Confidence 57899999887553 33445567888888887 333333 2 34566667765
No 464
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=69.02 E-value=0.61 Score=47.76 Aligned_cols=114 Identities=11% Similarity=0.244 Sum_probs=80.2
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCC-EEEEEeCCCeEEEEeCCCCeE-
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQV- 463 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~~~~- 463 (531)
+........|-|.+ .++.++.+..|..||- .++.......+.....++|.- ++. .++.+-..+.+.+||+.+...
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDk-egdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDK-EGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhcc-ccchhhhhhhcCCCeeechhhhhhHH
Confidence 44445566788887 7888888889999985 444444445566667788887 555 445566778999999987532
Q ss_pred -EEec-CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614 464 -VDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (531)
Q Consensus 464 -~~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l 504 (531)
+... .+.... +.|++.+..++.|...|.+.||+..+.+.
T Consensus 111 qLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ 151 (615)
T KOG2247|consen 111 QLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR 151 (615)
T ss_pred HHhccCcchHHH--HhhccCCccccccccccceEEEeccchhh
Confidence 2222 222233 78999999999999999999999765443
No 465
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.46 E-value=1.5e+02 Score=30.75 Aligned_cols=115 Identities=12% Similarity=0.161 Sum_probs=74.9
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~ 460 (531)
..++|.++.|++++ .|+.--.+++|-+++....+....+. .+..|...+|.. . .-+|.-... -+.+|.+..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~-G~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQ-GIEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecC-CeEEEEEch
Confidence 35689999999999 88888899999999986555444433 234588889986 3 444444333 366665543
Q ss_pred --CeEEEecCCCCceEEEEEccCCCEEEEEeC--CCcEEEEeCCCCeE
Q 009614 461 --CQVVDYTDIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQL 504 (531)
Q Consensus 461 --~~~~~~~~~~~~v~~v~~spdg~~l~sgs~--dg~I~iwd~~~~~l 504 (531)
..+.....+...|....|+++-+.+..++. .+++.=+.++++-.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 222235567778899999999876554443 34444444444433
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.26 E-value=32 Score=36.10 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=47.8
Q ss_pred ceEEEEEeeCCCCEEEEEeCCCeEEEEeC---------CCCeEE------------EecCCCCceEEEEEccCC---CEE
Q 009614 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEV---------RRCQVV------------DYTDIREIVSAVCYCPDG---KGG 485 (531)
Q Consensus 430 ~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~---------~~~~~~------------~~~~~~~~v~~v~~spdg---~~l 485 (531)
.|..|..+| .|..++-.+.+|.+.++=. ..++.+ -.....-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 355666777 6777777777775544321 112111 011122346778999975 678
Q ss_pred EEEeCCCcEEEEeCCCCeEE
Q 009614 486 IVGTMTGNCRFYDIKDNQLY 505 (531)
Q Consensus 486 ~sgs~dg~I~iwd~~~~~l~ 505 (531)
+.-+.|+.||+||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 88888999999999876655
No 467
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=67.46 E-value=98 Score=31.97 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=57.2
Q ss_pred eeEEEEcCCCeEEEEeCCCcE-EEEECCCCe-EEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe------
Q 009614 391 VLDLSWSKNGFLLSSSADKTV-RLWQVGIDR-CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ------ 462 (531)
Q Consensus 391 I~~l~~sp~~~l~s~s~Dg~V-~lwdl~~~~-~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~------ 462 (531)
...+...+++.++..+..|.+ +-||-.... ..........++.+.|.+ ++.+++++ .+|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 445566777744444444443 334432221 122233456789999998 78777766 4565433 333332
Q ss_pred EEE--ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614 463 VVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (531)
Q Consensus 463 ~~~--~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 498 (531)
... .......++++.|.+++..+++| ..|.+..-.
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~ 354 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST 354 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC
Confidence 111 11123458999999888755555 567665543
No 468
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=66.97 E-value=1.3e+02 Score=32.02 Aligned_cols=112 Identities=14% Similarity=0.083 Sum_probs=61.4
Q ss_pred EEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCc----eEEEEEeeCCCCEEEEEeC-------------CCeEEEE
Q 009614 394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY----VTSVAFNPVDDNYFISGSI-------------DGKVRIW 456 (531)
Q Consensus 394 l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~----V~sv~fsp~d~~~l~sgs~-------------Dg~I~Iw 456 (531)
+...++|.|+.++. ..++.+|+- |+.+..+..... -..+..-| +|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56678885555554 788888884 556665653332 35677788 8898888772 1246666
Q ss_pred eCCCCeEEE---ecCCC-------------------------CceEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614 457 EVRRCQVVD---YTDIR-------------------------EIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (531)
Q Consensus 457 d~~~~~~~~---~~~~~-------------------------~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~~~~l~~~ 507 (531)
| .+++++. +..|- --++++.+.+ ++.+|+++-.-..|...|..++++...
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 7777662 11110 1378999999 555555555566888899888888765
Q ss_pred ee
Q 009614 508 NQ 509 (531)
Q Consensus 508 ~~ 509 (531)
+-
T Consensus 309 lg 310 (477)
T PF05935_consen 309 LG 310 (477)
T ss_dssp ES
T ss_pred eC
Confidence 43
No 469
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=66.85 E-value=1.7e+02 Score=30.72 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=60.1
Q ss_pred eecCCCCeeEEEEcCCCeEEEEeC-CCcEEEEECCCCeEEEE--ee------cCCceEEEEEeeCCC------CEEEEEe
Q 009614 384 FQGHSSEVLDLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRV--FS------HNNYVTSVAFNPVDD------NYFISGS 448 (531)
Q Consensus 384 ~~~h~~~I~~l~~sp~~~l~s~s~-Dg~V~lwdl~~~~~l~~--~~------h~~~V~sv~fsp~d~------~~l~sgs 448 (531)
+...-...+.|+|.|++.++.+.. .|.|++++..++..... +. .......|+++| +- .+|+...
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P-dF~~~~~n~~lYvsy 103 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP-DFMQEKGNPYVYISY 103 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC-CccccCCCcEEEEEE
Confidence 333455678999999995545554 69999998665432211 11 246678999998 42 2344332
Q ss_pred ----------CCCeEEEEeCCCC-------eEE-E-ec-CCCCceEEEEEccCCCEEEEEeCC
Q 009614 449 ----------IDGKVRIWEVRRC-------QVV-D-YT-DIREIVSAVCYCPDGKGGIVGTMT 491 (531)
Q Consensus 449 ----------~Dg~I~Iwd~~~~-------~~~-~-~~-~~~~~v~~v~~spdg~~l~sgs~d 491 (531)
....|.-|.+... +.+ . .. .....-..|.|.|||.++++.+..
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234444544311 111 1 10 011224568899999877765544
No 470
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=66.60 E-value=1.7e+02 Score=30.42 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=25.6
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (531)
Q Consensus 471 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~ 502 (531)
..|.+++..+..+.|++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34889999988899999999999999999753
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=66.50 E-value=1.4e+02 Score=29.70 Aligned_cols=102 Identities=12% Similarity=0.248 Sum_probs=65.0
Q ss_pred CCCCeeEEEEcCCC-eEEEEeCCCc------EEEEECCC--C--eEEEEe-----e-cCC--------ceEEEEEeeCCC
Q 009614 387 HSSEVLDLSWSKNG-FLLSSSADKT------VRLWQVGI--D--RCLRVF-----S-HNN--------YVTSVAFNPVDD 441 (531)
Q Consensus 387 h~~~I~~l~~sp~~-~l~s~s~Dg~------V~lwdl~~--~--~~l~~~-----~-h~~--------~V~sv~fsp~d~ 441 (531)
.-+.+..|.+.+++ .+++-+.++. +..+++.. + ..+... . ..+ ..-+|++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 34678889998654 7777788777 66555543 1 111111 1 111 334788855 88
Q ss_pred CEEEEEeCC------CeEEEEeCCCCeEEE-------e---------cCCCCceEEEEEccCCCEEEEEeC
Q 009614 442 NYFISGSID------GKVRIWEVRRCQVVD-------Y---------TDIREIVSAVCYCPDGKGGIVGTM 490 (531)
Q Consensus 442 ~~l~sgs~D------g~I~Iwd~~~~~~~~-------~---------~~~~~~v~~v~~spdg~~l~sgs~ 490 (531)
.++++.-.+ ..|+.++.. +++.. + ...+...-+++++|||+.|+++..
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 888887777 788888877 44321 1 123456889999999997766544
No 472
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=65.94 E-value=1.4e+02 Score=29.40 Aligned_cols=113 Identities=18% Similarity=0.214 Sum_probs=68.4
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECC------CCeEE-EEee------cCCceEEEEEeeCCCC------------
Q 009614 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVG------IDRCL-RVFS------HNNYVTSVAFNPVDDN------------ 442 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~------~~~~l-~~~~------h~~~V~sv~fsp~d~~------------ 442 (531)
..-+.|+++|.+ .-++...-+...+||.. ..+.+ .++. .....+.+.|+. ...
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccce
Confidence 345789999998 66777777899999986 22222 2222 235688898885 222
Q ss_pred EEEEEeCCCeEEEEeCCCC------eEEEecCC-CCce-EEEEEccC--CCEEEE-EeCCCcEEEEeCCCC
Q 009614 443 YFISGSIDGKVRIWEVRRC------QVVDYTDI-REIV-SAVCYCPD--GKGGIV-GTMTGNCRFYDIKDN 502 (531)
Q Consensus 443 ~l~sgs~Dg~I~Iwd~~~~------~~~~~~~~-~~~v-~~v~~spd--g~~l~s-gs~dg~I~iwd~~~~ 502 (531)
.|+.++.||+|.-|...-. ..+..... ...| ..+++... +.+|.. --..++|.+||-.=.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 3677889999999985322 12222111 2333 34555433 445544 345788888886543
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=65.29 E-value=2.5e+02 Score=31.93 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=75.5
Q ss_pred cCCCCeeEEEEc---C--CC--eEEEEeCCCcEEEEE------CCC---------CeEEEEee----cCCceEEEEEeeC
Q 009614 386 GHSSEVLDLSWS---K--NG--FLLSSSADKTVRLWQ------VGI---------DRCLRVFS----HNNYVTSVAFNPV 439 (531)
Q Consensus 386 ~h~~~I~~l~~s---p--~~--~l~s~s~Dg~V~lwd------l~~---------~~~l~~~~----h~~~V~sv~fsp~ 439 (531)
.-..+|..|+|. . +. .++..-....+.|+. +.. ..++..+. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 346678888887 2 11 344444455566666 111 12333443 3456788999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCe-----EEE-ecCCC----------CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614 440 DDNYFISGSIDGKVRIWEVRRCQ-----VVD-YTDIR----------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (531)
Q Consensus 440 d~~~l~sgs~Dg~I~Iwd~~~~~-----~~~-~~~~~----------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~ 503 (531)
+...||.....|...||++.... .+. ..... ..-..|.|.++-..|++++. ..+.++|+.++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence 88899999999999999992111 111 11111 22347889988888888874 568999998775
Q ss_pred EE
Q 009614 504 LY 505 (531)
Q Consensus 504 l~ 505 (531)
..
T Consensus 236 ~~ 237 (765)
T PF10214_consen 236 QT 237 (765)
T ss_pred cc
Confidence 53
No 474
>PF15477 SMAP: Small acidic protein family
Probab=65.15 E-value=4.3 Score=30.30 Aligned_cols=13 Identities=62% Similarity=1.050 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhc
Q 009614 61 VNERRSKFLKLMG 73 (531)
Q Consensus 61 ~~~r~~~~~~~~~ 73 (531)
=.||..+|||.||
T Consensus 10 d~~rk~KFlRLMG 22 (69)
T PF15477_consen 10 DSERKEKFLRLMG 22 (69)
T ss_pred CHHHHHHHHHHhc
Confidence 4799999999999
No 475
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=64.99 E-value=66 Score=32.16 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=61.5
Q ss_pred CceEEEEEeeCCCCEEEEEeCCCe------EEEEeCCC-----Ce-----EEEecCCCC--------ceEEEEEccCCCE
Q 009614 429 NYVTSVAFNPVDDNYFISGSIDGK------VRIWEVRR-----CQ-----VVDYTDIRE--------IVSAVCYCPDGKG 484 (531)
Q Consensus 429 ~~V~sv~fsp~d~~~l~sgs~Dg~------I~Iwd~~~-----~~-----~~~~~~~~~--------~v~~v~~spdg~~ 484 (531)
+.+..|.+.| ++..+++.+.+|. +..+++.. .. .+.+....+ -.-+|++.++|.+
T Consensus 20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4567888887 5566666677777 66555543 11 111222222 2336788778887
Q ss_pred EEEEeCC------CcEEEEeCCCCeEEEEeeeeecc-------cccCCCceeeeEEEee
Q 009614 485 GIVGTMT------GNCRFYDIKDNQLYQQNQICLQG-------KKKLPGKRITGFQVVK 530 (531)
Q Consensus 485 l~sgs~d------g~I~iwd~~~~~l~~~~~~~~~~-------~kk~~~~~It~l~f~p 530 (531)
+++.=.+ ..|+-++.. |+++..+.++..- ......+-+.+++++|
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~ 156 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP 156 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC
Confidence 7776666 778889977 8887776544322 2334556777777765
No 476
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=64.48 E-value=2e+02 Score=30.64 Aligned_cols=85 Identities=12% Similarity=0.212 Sum_probs=45.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEEE-ec-CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614 441 DNYFISGSIDGKVRIWEVRRCQVVD-YT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (531)
Q Consensus 441 ~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~ 518 (531)
+..++=... ..|++.+....+... +. .....|.+.+. ++.+++.+..++.+.++.+.........+-.. ...
T Consensus 418 ~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 491 (504)
T PF10433_consen 418 DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDET---ILE 491 (504)
T ss_dssp TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE-------EE
T ss_pred CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccc---ccc
Confidence 344444433 358888887777664 32 23344554444 44677888889999999998887754333111 001
Q ss_pred CCceeeeEEEeeC
Q 009614 519 PGKRITGFQVVKI 531 (531)
Q Consensus 519 ~~~~It~l~f~p~ 531 (531)
-...|..+...||
T Consensus 492 ~~~eis~l~i~p~ 504 (504)
T PF10433_consen 492 LDNEISCLSIEPI 504 (504)
T ss_dssp -SS-EEEEE----
T ss_pred CCCceEEEEeCCC
Confidence 3478899998886
No 477
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=63.99 E-value=18 Score=23.14 Aligned_cols=28 Identities=25% Similarity=0.137 Sum_probs=23.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 484 GGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 484 ~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
.+++++.+|.|+-.|..+|+++.+++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566799999999999999999887754
No 478
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=63.53 E-value=1.4e+02 Score=31.44 Aligned_cols=154 Identities=12% Similarity=0.186 Sum_probs=81.3
Q ss_pred EccCCCEEE-EEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeC
Q 009614 292 FSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (531)
Q Consensus 292 fspdg~~La-sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (531)
...+..+|+ .|+.-..++-.|+..|+.+.....+... .+.+.+..... .......+.+-.+..+...+
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~---------qmt~eqtlvGlS~~svFrID 543 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQ---------QMTDEQTLVGLSDYSVFRID 543 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHH---------hcCccceEEeecccceEEec
Confidence 334555544 4555566777788888877776655443 23332221100 00111112233344455555
Q ss_pred CccccccCcceeEeec--CCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEE
Q 009614 371 PKVFRLLEKPLHEFQG--HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISG 447 (531)
Q Consensus 371 ~~~~~~~~~~~~~~~~--h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sg 447 (531)
++.....-. +...+. ......+..-..+|+++.++..|-|++||--..+....+ .....|..|.... +|.++++.
T Consensus 544 PR~~gNKi~-v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-~Gk~ilaT 621 (776)
T COG5167 544 PRARGNKIK-VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-NGKHILAT 621 (776)
T ss_pred ccccCCcee-eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeec-CCcEEEEe
Confidence 544321000 111111 122334444445679999999999999995433322222 2456778888887 88877776
Q ss_pred eCCCeEEEEeCC
Q 009614 448 SIDGKVRIWEVR 459 (531)
Q Consensus 448 s~Dg~I~Iwd~~ 459 (531)
+. ..+-+-|++
T Consensus 622 Ck-~yllL~d~~ 632 (776)
T COG5167 622 CK-NYLLLTDVP 632 (776)
T ss_pred ec-ceEEEEecc
Confidence 64 467777765
No 479
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=62.59 E-value=2.5e+02 Score=31.01 Aligned_cols=171 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC
Q 009614 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (531)
Q Consensus 284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (531)
.+.|-+|.|.++++.+++.-.+|.|.+||...+...............+.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~y----------------------------- 179 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSY----------------------------- 179 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceeh-----------------------------
Q ss_pred ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeC-CCc---EEEEEC--CCCeEEEEe---ecCCceEE
Q 009614 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-DKT---VRLWQV--GIDRCLRVF---SHNNYVTS 433 (531)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~-Dg~---V~lwdl--~~~~~l~~~---~h~~~V~s 433 (531)
..-|.....-... ++++-+. .+. .+++.+ ....+...- .+......
T Consensus 180 ------------------------s~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~ 235 (670)
T PF10395_consen 180 ------------------------SKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLED 235 (670)
T ss_pred ------------------------hhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCccc
Q ss_pred EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEE-----EEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV-----CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (531)
Q Consensus 434 v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v-----~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~ 508 (531)
..|.-.+|.+..- .+++|.+|++...+..........|... .+.|-..-=+.-+.++.|++.|+.-..++.++
T Consensus 236 s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 236 SKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEF 313 (670)
T ss_pred ceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhh
Q ss_pred e
Q 009614 509 Q 509 (531)
Q Consensus 509 ~ 509 (531)
.
T Consensus 314 ~ 314 (670)
T PF10395_consen 314 E 314 (670)
T ss_pred h
No 480
>PHA03098 kelch-like protein; Provisional
Probab=59.03 E-value=81 Score=33.90 Aligned_cols=101 Identities=10% Similarity=0.153 Sum_probs=55.7
Q ss_pred eEEEEeCC------CcEEEEECCCCeEEEEeecC---CceEEEEEeeCCCCEEEEEeCC-----CeEEEEeCCCCeEEEe
Q 009614 401 FLLSSSAD------KTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDY 466 (531)
Q Consensus 401 ~l~s~s~D------g~V~lwdl~~~~~l~~~~h~---~~V~sv~fsp~d~~~l~sgs~D-----g~I~Iwd~~~~~~~~~ 466 (531)
.++.|+.+ ..+..||..+.+....-... .....+.+ ++.+++.|+.+ ..+..||..+.+-...
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 55555543 25778888877664332211 11222222 67788888865 3577888887654432
Q ss_pred cCCCCce--EEEEEccCCCEEEEEeCC------CcEEEEeCCCCeEE
Q 009614 467 TDIREIV--SAVCYCPDGKGGIVGTMT------GNCRFYDIKDNQLY 505 (531)
Q Consensus 467 ~~~~~~v--~~v~~spdg~~l~sgs~d------g~I~iwd~~~~~l~ 505 (531)
.....+. .++ ..-+++..+.|+.+ ..+..||+.+++..
T Consensus 374 ~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 374 PPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 2211111 112 22366777777742 35889998877654
No 481
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.16 E-value=2.1e+02 Score=32.71 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=47.0
Q ss_pred eeeCCCCeEEeeecCCeEEEEeCCCCcccccccc------cceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLY------TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (531)
Q Consensus 242 ~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~------~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 315 (531)
++..-|+.+..|+.+|.+.+|.+........... ....+ ++.+|..|...+.-.++++- .|+.|.++++.+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~--~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~ 97 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEF--SKKPINKLLVCASLELLLIL-SDSQIAVHKLPE 97 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhh--ccchhHHHhhcchhcchhee-cCCcceeeecCc
Confidence 4556788999999999999999886543222111 11112 35678877777655444433 466788887766
Q ss_pred Ccc
Q 009614 316 HER 318 (531)
Q Consensus 316 ~~~ 318 (531)
-+.
T Consensus 98 ~~~ 100 (877)
T KOG2063|consen 98 LEP 100 (877)
T ss_pred ccc
Confidence 544
No 482
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=56.27 E-value=16 Score=23.88 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=17.4
Q ss_pred CCccccccCCCCChHHHHHHHHHH
Q 009614 48 YSQSEIWTGYPQSVNERRSKFLKL 71 (531)
Q Consensus 48 ~~~~~~~~~~~~~~~~r~~~~~~~ 71 (531)
.+.|..+ ....+-+|||++||..
T Consensus 4 ~sqYK~~-~~~~~Q~eRR~~~Le~ 26 (40)
T PF11538_consen 4 LSQYKNK-GSALDQEERRREFLER 26 (40)
T ss_dssp CSCTT-T-TTSCSHHHHHHHHHHH
T ss_pred HHHhhcc-cchHhHHHHHHHHHHH
Confidence 4567777 6667999999999975
No 483
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=55.33 E-value=2.7e+02 Score=29.26 Aligned_cols=35 Identities=9% Similarity=0.020 Sum_probs=26.1
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (531)
Q Consensus 282 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 316 (531)
..-..-+.|+|.|||++|++--..|.|++++..++
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 34456789999999987777655699998875443
No 484
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=52.89 E-value=3.9e+02 Score=30.29 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=47.7
Q ss_pred CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe----e----------------cCCceEEEEEeeCCCCEEEE
Q 009614 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF----S----------------HNNYVTSVAFNPVDDNYFIS 446 (531)
Q Consensus 388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~----~----------------h~~~V~sv~fsp~d~~~l~s 446 (531)
.+.|.++....-+ .++..-.||+|.++|-.+-+.+... . +-..+.-++|+| .+.-++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence 4567788777766 8899999999999998776444333 1 112334578999 7888888
Q ss_pred EeCCCeEE
Q 009614 447 GSIDGKVR 454 (531)
Q Consensus 447 gs~Dg~I~ 454 (531)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888866
No 485
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=51.47 E-value=2.5e+02 Score=27.77 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=43.1
Q ss_pred CcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCC----eEEEEeCCCCeEEEecCC---CCce----EE
Q 009614 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDI---REIV----SA 475 (531)
Q Consensus 409 g~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg----~I~Iwd~~~~~~~~~~~~---~~~v----~~ 475 (531)
..+..||+.+.+....-. ........+..- ++++++.|+.++ .+.+||..+.+-...... ..+. .+
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~ 217 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAA 217 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceecccee
Confidence 357888988776543321 111112222223 667888887664 356888887665433221 1111 11
Q ss_pred EEEccCCCEEEEEeCC
Q 009614 476 VCYCPDGKGGIVGTMT 491 (531)
Q Consensus 476 v~~spdg~~l~sgs~d 491 (531)
.+...++++++.|+.+
T Consensus 218 ~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 218 SIKINESLLLCIGGFN 233 (323)
T ss_pred EEEECCCEEEEECCcC
Confidence 1122367788888876
No 486
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=50.91 E-value=1.3e+02 Score=33.70 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=51.1
Q ss_pred CcceeEeecCCCCeeEEEEc----CCC---eEEEEeCCCcEE-EEECCC--------CeEEEEeecCCceEEEEEeeCCC
Q 009614 378 EKPLHEFQGHSSEVLDLSWS----KNG---FLLSSSADKTVR-LWQVGI--------DRCLRVFSHNNYVTSVAFNPVDD 441 (531)
Q Consensus 378 ~~~~~~~~~h~~~I~~l~~s----p~~---~l~s~s~Dg~V~-lwdl~~--------~~~l~~~~h~~~V~sv~fsp~d~ 441 (531)
+.|+....+ ....+.|+.. .++ .|+.|+.+|+|. +-.+.. -+.+..|.+..+|..|..++ ..
T Consensus 398 ~~P~l~~~~-~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~-~~ 475 (737)
T KOG3611|consen 398 GRPLLVKTG-DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSS-KR 475 (737)
T ss_pred CCceEEecc-cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecc-cC
Confidence 345555554 5566677666 344 678888888853 333333 12344556778999999999 67
Q ss_pred CEEEEEeCCCeEEE
Q 009614 442 NYFISGSIDGKVRI 455 (531)
Q Consensus 442 ~~l~sgs~Dg~I~I 455 (531)
..|++|+..|.++|
T Consensus 476 ~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 476 GSLYVGSRSGVVQV 489 (737)
T ss_pred CeEEEEccCcEEEe
Confidence 78889998887766
No 487
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=50.74 E-value=2.8e+02 Score=28.04 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=56.2
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeecCCc-eEEEEEee-CCCCEEEEEeC--CCeEEEEeCCCCeEEEecCCCCc----
Q 009614 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNY-VTSVAFNP-VDDNYFISGSI--DGKVRIWEVRRCQVVDYTDIREI---- 472 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~-V~sv~fsp-~d~~~l~sgs~--Dg~I~Iwd~~~~~~~~~~~~~~~---- 472 (531)
.++.++.++.+...|..+++.+..+..... -..+...| .....++.+.. ++.+.-.|+.++...-.......
T Consensus 155 ~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~ 234 (370)
T COG1520 155 TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRT 234 (370)
T ss_pred EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcc
Confidence 444444566666666666666555432211 00000011 02334555554 66777778877766522111100
Q ss_pred -e--E-EEEEcc--CCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614 473 -V--S-AVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (531)
Q Consensus 473 -v--~-~v~~sp--dg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~ 511 (531)
+ + .+...+ .+..+..++.+|.+.-.|..+++++.+....
T Consensus 235 ~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 235 AISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 1 0 111101 1223466777888888899999988877653
No 488
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=50.62 E-value=37 Score=20.05 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=14.3
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEE
Q 009614 473 VSAVCYCPDGKGGIVGTMTGNCRFY 497 (531)
Q Consensus 473 v~~v~~spdg~~l~sgs~dg~I~iw 497 (531)
...++..++|+.+++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3556666666665555555555543
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=50.50 E-value=38 Score=26.71 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=29.0
Q ss_pred EeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEe
Q 009614 447 GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT 489 (531)
Q Consensus 447 gs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 489 (531)
+..+|.+.-||..+++...+...-.-.+.|++++|+..|+++=
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 3456788899999988754444344678899999999776653
No 490
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.96 E-value=2.1e+02 Score=33.82 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=29.4
Q ss_pred cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC
Q 009614 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI 418 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~ 418 (531)
.+..+|..|++...- .+++-+..++|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 577899999998876 899999999999999976
No 491
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=47.23 E-value=71 Score=20.14 Aligned_cols=29 Identities=14% Similarity=0.469 Sum_probs=18.0
Q ss_pred cCCCCeeEEEEcCCC-e-EEEEeCC--CcEEEE
Q 009614 386 GHSSEVLDLSWSKNG-F-LLSSSAD--KTVRLW 414 (531)
Q Consensus 386 ~h~~~I~~l~~sp~~-~-l~s~s~D--g~V~lw 414 (531)
...+......|+|+| . +.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345567788999999 4 4455555 666555
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=46.40 E-value=3.4e+02 Score=27.77 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=70.2
Q ss_pred eEEEEeCCCcEEEEECC---CC----eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC-----CeEEEec-
Q 009614 401 FLLSSSADKTVRLWQVG---ID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-----CQVVDYT- 467 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~---~~----~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~-----~~~~~~~- 467 (531)
+.+....+|.+..|-+. .+ +.++.|.-...+-.+.... ...+|+.+-.+.-|.-|+..- ++.+...
T Consensus 173 ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~ 251 (381)
T PF02333_consen 173 YAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDD-ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD 251 (381)
T ss_dssp EEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEET-TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS
T ss_pred EEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEec-ccCCEEEecCccEEEEEecCCCCCCcceeeeccc
Confidence 66777788887777663 22 4678888778899999987 677899999988888888752 2334322
Q ss_pred --CCCCceEEEEEc--cCCC-EEEEEe-CCCcEEEEeCCC-CeEEEEeeee
Q 009614 468 --DIREIVSAVCYC--PDGK-GGIVGT-MTGNCRFYDIKD-NQLYQQNQIC 511 (531)
Q Consensus 468 --~~~~~v~~v~~s--pdg~-~l~sgs-~dg~I~iwd~~~-~~l~~~~~~~ 511 (531)
.....|-.|++- ++++ ||++.+ .+++..||+... ...+..+.+.
T Consensus 252 g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i~ 302 (381)
T PF02333_consen 252 GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRIG 302 (381)
T ss_dssp SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEEE
T ss_pred ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEEec
Confidence 234456666653 4443 455444 477899999875 4556666664
No 493
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=46.21 E-value=91 Score=24.39 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCEEEEEeC-CCcEEEEeCCC
Q 009614 471 EIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKD 501 (531)
Q Consensus 471 ~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~ 501 (531)
...+.|.++|++++|.+++. .+.|++|....
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34577999999999877765 67899998653
No 494
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=45.43 E-value=60 Score=20.62 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=23.0
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEeec
Q 009614 401 FLLSSSADKTVRLWQVGIDRCLRVFSH 427 (531)
Q Consensus 401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h 427 (531)
.++.++.+|.|.-.|.++|+.+..+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456679999999999999999988863
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=45.21 E-value=2.2e+02 Score=29.46 Aligned_cols=30 Identities=13% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCeeEEEEcCCC-eEEEEeCCCcEEEEECCC
Q 009614 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGI 418 (531)
Q Consensus 389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~ 418 (531)
..|..|++.+.. .|++.+.++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 349999998877 999999999999999974
No 496
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=44.91 E-value=57 Score=19.40 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=20.2
Q ss_pred ceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614 430 YVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (531)
Q Consensus 430 ~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd 457 (531)
.|.+|+..+ .+++++..-+.+|||.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 577888754 7899998889999984
No 497
>PLN02153 epithiospecifier protein
Probab=44.86 E-value=3.1e+02 Score=27.40 Aligned_cols=112 Identities=7% Similarity=0.040 Sum_probs=0.0
Q ss_pred eEEEEcCCCeEEEEeCC-----------CcEEEEECCCCeEEEEeecC---CceEEEEEeeCCCCEEEEEeCC-------
Q 009614 392 LDLSWSKNGFLLSSSAD-----------KTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSID------- 450 (531)
Q Consensus 392 ~~l~~sp~~~l~s~s~D-----------g~V~lwdl~~~~~l~~~~h~---~~V~sv~fsp~d~~~l~sgs~D------- 450 (531)
.+++...+.+++.|+.+ ..|.+||..+.+....-... ..-........++++++.|+.+
T Consensus 131 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG 210 (341)
T PLN02153 131 HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGG 210 (341)
T ss_pred eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCC
Q ss_pred ------CeEEEEeCCCCeEEEecC----CCCceEEEEEccCCCEEEEEeCC--------------CcEEEEeCCCCe
Q 009614 451 ------GKVRIWEVRRCQVVDYTD----IREIVSAVCYCPDGKGGIVGTMT--------------GNCRFYDIKDNQ 503 (531)
Q Consensus 451 ------g~I~Iwd~~~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~d--------------g~I~iwd~~~~~ 503 (531)
..|.+||+.+.+-..... ........+...++++++.|+.. +.+..||+.+.+
T Consensus 211 ~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 211 KSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccE
No 498
>PHA02790 Kelch-like protein; Provisional
Probab=44.77 E-value=2e+02 Score=30.46 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=54.8
Q ss_pred CC-eEEEEeCC--CcEEEEECCCCeEEEEeecCCce--EEEEEeeCCCCEEEEEeCCC---eEEEEeCCCCeEEEecCCC
Q 009614 399 NG-FLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQVVDYTDIR 470 (531)
Q Consensus 399 ~~-~l~s~s~D--g~V~lwdl~~~~~l~~~~h~~~V--~sv~fsp~d~~~l~sgs~Dg---~I~Iwd~~~~~~~~~~~~~ 470 (531)
++ ..+.|+.+ ..+..||..+++....-.-..+. .+++.. ++.+.+.|+.++ .+..||..+.+-.......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 44 44555543 45788888766544332211111 122221 677888887654 4778888876544322211
Q ss_pred Cce-EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614 471 EIV-SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (531)
Q Consensus 471 ~~v-~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~ 506 (531)
.+. ...+..-+|+..+.|+ .+.+||..+++-..
T Consensus 396 ~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~ 429 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTL 429 (480)
T ss_pred CccccceEEEECCEEEEECC---ceEEecCCCCcEeE
Confidence 111 1112234666666664 57789988776543
No 499
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=44.68 E-value=2e+02 Score=24.61 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=44.6
Q ss_pred eeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEEcccC
Q 009614 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-----DGQYLASGGEDGTVRVWKVIEH 316 (531)
Q Consensus 242 ~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-----dg~~Lasgs~Dg~I~iWd~~~~ 316 (531)
.|......|++++.-|+|.|++..............-.+..-...|++|+-.+ +...|+.|+. ..+..||+..+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 45566667888999999999987654322111111111222345666665433 3346666654 56888998766
Q ss_pred cc
Q 009614 317 ER 318 (531)
Q Consensus 317 ~~ 318 (531)
..
T Consensus 84 ~d 85 (136)
T PF14781_consen 84 SD 85 (136)
T ss_pred ch
Confidence 53
No 500
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=44.35 E-value=57 Score=37.10 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=52.6
Q ss_pred eeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (531)
Q Consensus 242 ~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 316 (531)
.+...+..++.|...|.+.+++.......+.. ....-.+|+-++..+.|.|+++.++.+=..|-..+|....+
T Consensus 155 SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~--s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~ 227 (1023)
T KOG2006|consen 155 SVNHEFQLLAYGTPVGEVLLYSIDEANSSLVF--SNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGN 227 (1023)
T ss_pred eccchhhhheecccccceeehhhhhhccceee--ecccCccccccccccCcCCccceeeeeecccceEEeccccc
Confidence 45567778899999999999988754432211 11112344557888999999999999988899999986544
Done!