BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009616
         (531 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CE9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
           From Clostridium Acetobutylicum At 2.37 A Resolution
 pdb|3CE9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
           From Clostridium Acetobutylicum At 2.37 A Resolution
 pdb|3CE9|C Chain C, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
           From Clostridium Acetobutylicum At 2.37 A Resolution
 pdb|3CE9|D Chain D, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
           From Clostridium Acetobutylicum At 2.37 A Resolution
          Length = 354

 Score = 30.0 bits (66), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 36/140 (25%)

Query: 140 DFEVITDKNSVNALPQT--------IFSAKLLTSLKLFGCKLE---QPSHCANLQSLKKL 188
           DF V   K SVN+  +T        +F  +L+ SL   G   E     S  +  + L   
Sbjct: 196 DFAVXISKKSVNSFVRTDFKSIKDEVFLKELVDSLTXNGIAXEIAGNSSPASGAEHLISH 255

Query: 189 SLDEVYVNDQM----------VQSLVRECR------VLEDLSFF-YCFGLK------RLR 225
           +LD+   N Q+          + S V + R      +L D  FF Y  GL       +  
Sbjct: 256 ALDKFLPNPQLHGIQVGVATYIXSKVHKHREERIKKILSDTGFFNYVKGLNXKKSDFKRA 315

Query: 226 ISEAHKLKSLILRFTYQELE 245
           ISEAH +K    R+TY  +E
Sbjct: 316 ISEAHLIKP--ARYTYLHVE 333


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,986,944
Number of Sequences: 62578
Number of extensions: 596114
Number of successful extensions: 1417
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1413
Number of HSP's gapped (non-prelim): 16
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)