Query 009616
Match_columns 531
No_of_seqs 498 out of 2927
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 15:16:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 1.5E-18 3.2E-23 198.7 10.9 155 153-309 156-318 (968)
2 PLN00113 leucine-rich repeat r 99.8 3.2E-18 6.9E-23 195.9 13.0 263 133-405 92-371 (968)
3 KOG2120 SCF ubiquitin ligase, 99.7 1.4E-18 3.1E-23 159.8 -1.1 268 10-343 98-389 (419)
4 KOG4194 Membrane glycoprotein 99.6 6.3E-17 1.4E-21 161.2 1.0 170 134-309 102-279 (873)
5 KOG4341 F-box protein containi 99.6 3.6E-17 7.8E-22 157.3 -3.3 336 9-400 70-436 (483)
6 KOG4194 Membrane glycoprotein 99.6 6.4E-16 1.4E-20 154.2 0.8 269 134-432 149-426 (873)
7 PLN03210 Resistant to P. syrin 99.5 4.8E-14 1E-18 162.5 11.7 272 135-431 590-902 (1153)
8 PLN03210 Resistant to P. syrin 99.4 5.2E-13 1.1E-17 154.0 13.0 256 134-401 611-904 (1153)
9 KOG0444 Cytoskeletal regulator 99.4 7.7E-15 1.7E-19 147.5 -3.8 261 147-432 89-372 (1255)
10 KOG0444 Cytoskeletal regulator 99.4 1.6E-15 3.5E-20 152.3 -11.5 272 134-432 55-349 (1255)
11 cd00116 LRR_RI Leucine-rich re 99.2 3.1E-11 6.7E-16 120.3 6.4 85 135-220 24-120 (319)
12 PRK15387 E3 ubiquitin-protein 99.2 7.9E-11 1.7E-15 127.3 9.3 255 134-434 201-457 (788)
13 KOG0472 Leucine-rich repeat pr 99.1 3.4E-13 7.4E-18 129.4 -9.0 156 149-309 148-307 (565)
14 KOG0618 Serine/threonine phosp 99.0 2.4E-11 5.1E-16 128.2 -2.4 146 161-309 219-393 (1081)
15 cd00116 LRR_RI Leucine-rich re 99.0 4E-10 8.7E-15 112.3 5.8 154 156-309 18-203 (319)
16 KOG0618 Serine/threonine phosp 99.0 9.6E-12 2.1E-16 131.1 -6.7 298 135-464 69-440 (1081)
17 PRK15387 E3 ubiquitin-protein 99.0 1.7E-09 3.8E-14 117.0 9.5 131 134-287 222-355 (788)
18 PRK15370 E3 ubiquitin-protein 98.9 1.2E-09 2.5E-14 118.9 7.0 155 135-310 179-336 (754)
19 KOG0617 Ras suppressor protein 98.9 2.8E-11 6.1E-16 103.4 -5.5 149 156-308 28-182 (264)
20 KOG4341 F-box protein containi 98.9 1.6E-10 3.4E-15 112.1 -1.4 223 161-401 138-383 (483)
21 KOG3207 Beta-tubulin folding c 98.8 2.5E-10 5.4E-15 111.3 -2.5 152 159-310 119-282 (505)
22 PRK15370 E3 ubiquitin-protein 98.8 1.2E-08 2.5E-13 111.2 9.9 212 134-370 199-424 (754)
23 KOG0617 Ras suppressor protein 98.8 6.9E-11 1.5E-15 101.1 -7.1 148 135-288 34-187 (264)
24 KOG0472 Leucine-rich repeat pr 98.8 4.7E-11 1E-15 114.9 -9.4 251 157-454 64-320 (565)
25 KOG2120 SCF ubiquitin ligase, 98.8 3.8E-10 8.3E-15 104.8 -3.5 168 185-352 187-374 (419)
26 PF12937 F-box-like: F-box-lik 98.7 8.1E-09 1.8E-13 70.9 3.6 36 10-45 1-36 (47)
27 KOG1909 Ran GTPase-activating 98.7 5.4E-09 1.2E-13 99.5 3.1 209 102-330 29-280 (382)
28 PF14580 LRR_9: Leucine-rich r 98.6 1E-08 2.2E-13 91.3 1.7 58 251-308 87-149 (175)
29 KOG4237 Extracellular matrix p 98.6 1.3E-08 2.8E-13 98.3 0.6 135 148-285 56-199 (498)
30 KOG3207 Beta-tubulin folding c 98.5 1.5E-08 3.3E-13 99.0 0.3 152 159-310 144-312 (505)
31 KOG1909 Ran GTPase-activating 98.4 1E-07 2.2E-12 90.9 2.8 152 159-310 28-224 (382)
32 PF00646 F-box: F-box domain; 98.3 1.9E-07 4.1E-12 64.4 1.3 37 10-46 3-39 (48)
33 PF14580 LRR_9: Leucine-rich r 98.2 8.4E-07 1.8E-11 79.1 3.3 110 178-311 14-125 (175)
34 KOG1259 Nischarin, modulator o 98.2 1.6E-07 3.5E-12 87.6 -1.4 127 182-310 283-410 (490)
35 smart00256 FBOX A Receptor for 98.2 1.4E-06 3.1E-11 57.7 3.6 34 13-46 1-34 (41)
36 KOG4658 Apoptotic ATPase [Sign 98.1 1.6E-05 3.6E-10 88.3 10.2 217 83-310 456-679 (889)
37 KOG3665 ZYG-1-like serine/thre 98.0 1.1E-06 2.3E-11 95.1 0.4 148 161-308 122-284 (699)
38 KOG1859 Leucine-rich repeat pr 97.9 1E-06 2.2E-11 91.6 -2.6 206 99-310 51-290 (1096)
39 KOG4237 Extracellular matrix p 97.9 1.1E-06 2.5E-11 85.1 -2.6 61 250-311 272-334 (498)
40 COG4886 Leucine-rich repeat (L 97.9 6.9E-06 1.5E-10 84.5 2.9 144 161-308 116-264 (394)
41 KOG1259 Nischarin, modulator o 97.8 6.3E-06 1.4E-10 77.2 1.3 102 204-310 210-318 (490)
42 PF13855 LRR_8: Leucine rich r 97.7 3.3E-05 7.2E-10 56.2 3.4 58 252-310 1-60 (61)
43 PF13855 LRR_8: Leucine rich r 97.7 1.5E-05 3.3E-10 58.0 1.5 58 161-219 1-60 (61)
44 KOG1947 Leucine rich repeat pr 97.7 1.4E-05 3.1E-10 84.3 1.9 128 134-262 188-331 (482)
45 COG4886 Leucine-rich repeat (L 97.7 1.7E-05 3.8E-10 81.5 2.1 168 134-310 116-288 (394)
46 KOG4658 Apoptotic ATPase [Sign 97.7 8.8E-06 1.9E-10 90.4 -0.5 198 151-352 560-781 (889)
47 PLN03150 hypothetical protein; 97.6 7.1E-05 1.5E-09 81.2 5.2 101 162-263 419-526 (623)
48 KOG0532 Leucine-rich repeat (L 97.4 4.4E-06 9.6E-11 84.7 -6.0 131 153-287 113-247 (722)
49 PLN03150 hypothetical protein; 97.4 0.00016 3.5E-09 78.5 5.2 80 231-311 419-502 (623)
50 KOG2982 Uncharacterized conser 97.2 0.00016 3.4E-09 68.1 2.2 65 156-220 40-109 (418)
51 KOG3665 ZYG-1-like serine/thre 97.2 0.00017 3.7E-09 78.3 2.9 125 183-309 122-260 (699)
52 KOG0532 Leucine-rich repeat (L 97.2 2.2E-05 4.9E-10 79.8 -3.7 157 149-311 86-246 (722)
53 KOG2982 Uncharacterized conser 97.2 0.0002 4.4E-09 67.3 2.7 179 134-314 71-264 (418)
54 PF12799 LRR_4: Leucine Rich r 97.0 0.00044 9.6E-09 46.3 2.4 35 161-195 1-36 (44)
55 KOG2739 Leucine-rich acidic nu 97.0 0.0001 2.2E-09 68.4 -1.1 57 207-263 42-102 (260)
56 KOG1947 Leucine rich repeat pr 96.8 0.00057 1.2E-08 72.0 2.3 63 250-312 241-308 (482)
57 COG5238 RNA1 Ran GTPase-activa 96.8 0.0018 3.8E-08 60.4 4.9 96 122-219 17-131 (388)
58 COG5238 RNA1 Ran GTPase-activa 96.7 0.0008 1.7E-08 62.7 2.3 176 120-310 42-253 (388)
59 KOG0531 Protein phosphatase 1, 96.7 0.00017 3.7E-09 74.5 -3.1 105 156-263 90-197 (414)
60 PRK15386 type III secretion pr 96.6 0.005 1.1E-07 62.1 7.1 11 275-285 157-167 (426)
61 KOG1644 U2-associated snRNP A' 96.6 0.0019 4.2E-08 57.6 3.7 61 250-310 86-151 (233)
62 KOG2739 Leucine-rich acidic nu 96.6 0.00029 6.4E-09 65.3 -1.5 106 158-263 40-154 (260)
63 KOG1859 Leucine-rich repeat pr 96.6 4.4E-05 9.5E-10 79.8 -7.8 119 163-286 166-291 (1096)
64 KOG0531 Protein phosphatase 1, 96.6 0.00031 6.7E-09 72.7 -2.0 125 160-287 71-199 (414)
65 PF12799 LRR_4: Leucine Rich r 96.5 0.0029 6.3E-08 42.3 3.3 35 253-287 2-37 (44)
66 KOG2123 Uncharacterized conser 96.2 0.00021 4.6E-09 66.6 -5.1 75 206-280 39-123 (388)
67 KOG1644 U2-associated snRNP A' 96.1 0.011 2.4E-07 53.0 5.3 58 162-220 43-100 (233)
68 PRK15386 type III secretion pr 95.9 0.017 3.8E-07 58.2 6.7 116 182-312 51-169 (426)
69 KOG2123 Uncharacterized conser 94.9 0.0013 2.9E-08 61.4 -4.6 79 230-310 19-99 (388)
70 KOG0281 Beta-TrCP (transducin 94.6 0.018 4E-07 55.1 1.9 37 7-43 72-112 (499)
71 KOG3864 Uncharacterized conser 94.4 0.008 1.7E-07 53.8 -0.9 89 151-239 91-185 (221)
72 PF07723 LRR_2: Leucine Rich R 93.7 0.097 2.1E-06 30.4 3.1 25 184-208 1-26 (26)
73 PF13306 LRR_5: Leucine rich r 93.6 0.079 1.7E-06 44.6 3.7 36 269-307 76-111 (129)
74 PLN03215 ascorbic acid mannose 92.9 0.078 1.7E-06 53.0 3.0 38 9-46 3-41 (373)
75 KOG2997 F-box protein FBX9 [Ge 92.4 0.069 1.5E-06 51.0 1.7 36 8-43 105-145 (366)
76 PF08387 FBD: FBD; InterPro: 91.5 0.065 1.4E-06 37.1 0.4 34 490-523 7-50 (51)
77 PF13306 LRR_5: Leucine rich r 90.3 0.17 3.7E-06 42.5 2.0 56 158-216 9-66 (129)
78 KOG4579 Leucine-rich repeat (L 89.5 0.025 5.4E-07 47.5 -3.6 78 230-309 53-133 (177)
79 KOG4579 Leucine-rich repeat (L 89.2 0.037 8.1E-07 46.5 -2.8 63 159-223 51-115 (177)
80 KOG3864 Uncharacterized conser 89.1 0.15 3.2E-06 45.9 0.6 62 270-331 121-187 (221)
81 PF00560 LRR_1: Leucine Rich R 88.5 0.26 5.6E-06 27.3 1.1 14 162-175 1-14 (22)
82 PF13013 F-box-like_2: F-box-l 83.2 1.1 2.4E-05 36.4 2.7 30 9-38 21-50 (109)
83 KOG0274 Cdc4 and related F-box 82.6 0.68 1.5E-05 49.2 1.8 39 5-43 103-141 (537)
84 PF13516 LRR_6: Leucine Rich r 82.6 0.91 2E-05 25.6 1.5 21 182-202 1-21 (24)
85 PF13504 LRR_7: Leucine rich r 82.3 1.2 2.6E-05 22.9 1.7 13 162-174 2-14 (17)
86 smart00367 LRR_CC Leucine-rich 76.4 1.8 3.9E-05 24.9 1.5 17 298-314 1-17 (26)
87 smart00579 FBD domain in FBox 74.7 1 2.2E-05 33.6 0.1 33 493-525 1-43 (72)
88 KOG4308 LRR-containing protein 70.0 0.095 2.1E-06 54.8 -8.7 64 157-220 111-184 (478)
89 PF08387 FBD: FBD; InterPro: 66.4 10 0.00022 26.1 3.6 38 360-398 13-50 (51)
90 KOG4308 LRR-containing protein 60.6 0.16 3.5E-06 53.0 -9.1 58 163-220 89-156 (478)
91 smart00368 LRR_RI Leucine rich 60.0 6.5 0.00014 23.1 1.5 20 183-202 2-21 (28)
92 PF09372 PRANC: PRANC domain; 51.9 9.3 0.0002 30.3 1.7 25 8-32 70-94 (97)
93 KOG3763 mRNA export factor TAP 49.9 5.9 0.00013 41.4 0.3 38 181-218 216-254 (585)
94 smart00579 FBD domain in FBox 48.7 31 0.00068 25.4 4.0 39 361-400 5-43 (72)
95 smart00369 LRR_TYP Leucine-ric 48.6 12 0.00026 21.2 1.4 15 161-175 2-16 (26)
96 smart00370 LRR Leucine-rich re 48.6 12 0.00026 21.2 1.4 15 161-175 2-16 (26)
97 KOG3926 F-box proteins [Amino 47.8 5.7 0.00012 37.4 -0.2 49 9-57 201-256 (332)
98 KOG3763 mRNA export factor TAP 43.8 11 0.00025 39.4 1.2 31 275-305 271-307 (585)
99 KOG4408 Putative Mg2+ and Co2+ 31.2 13 0.00027 36.3 -0.7 35 10-44 8-42 (386)
100 smart00365 LRR_SD22 Leucine-ri 28.8 41 0.00088 19.5 1.4 14 274-287 2-15 (26)
101 KOG1665 AFH1-interacting prote 21.0 1.8E+02 0.004 26.8 4.7 39 182-220 170-208 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=1.5e-18 Score=198.69 Aligned_cols=155 Identities=23% Similarity=0.172 Sum_probs=68.9
Q ss_pred CCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccc
Q 009616 153 LPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISE 228 (531)
Q Consensus 153 lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~ 228 (531)
+|..+..+++|++|+|++|.+.+ |..++++++|++|+|++|.+.+. ++..++++++|++|+|++|...+.++ +.+
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 44444444555555555544433 33444455555555544444221 22334444555555554444332221 234
Q ss_pred cccccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616 229 AHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304 (531)
Q Consensus 229 l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L 304 (531)
+++|++|++++|. +.++....++++|++|++++|. +..|..+.++++|+.|++++|.+++. ++..+.++++|+.|
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L 313 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEIL 313 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCcEE
Confidence 4455555555443 1222222344455555555544 33344444455555555554444422 23334445555555
Q ss_pred Eeccc
Q 009616 305 SIISL 309 (531)
Q Consensus 305 ~L~~c 309 (531)
++++|
T Consensus 314 ~l~~n 318 (968)
T PLN00113 314 HLFSN 318 (968)
T ss_pred ECCCC
Confidence 55544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=3.2e-18 Score=195.92 Aligned_cols=263 Identities=15% Similarity=0.163 Sum_probs=170.6
Q ss_pred HcCCcEEEEeeecCCCccccCCcccc-CCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616 133 ENGVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le 211 (531)
.++++.|+|+. + .....+|..++ .+++|++|+|++|.+.+....+.+++|++|+|++|.+++ .++..++++++|+
T Consensus 92 l~~L~~L~Ls~--n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~ 167 (968)
T PLN00113 92 LPYIQTINLSN--N-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCEEECCC--C-ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCC
Confidence 35788888875 2 22336777766 788899999998888762233568888889888888753 2455578888888
Q ss_pred eEEeeecCCccee--eccccccccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCC
Q 009616 212 DLSFFYCFGLKRL--RISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH 285 (531)
Q Consensus 212 ~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~ 285 (531)
+|+|++|...+.+ .+.++++|++|++++|. +.++.....+++|+.|++++|. +..|..++.+++|+.|++++|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 8888888765443 24567888888888886 3334444567888888888887 4566678888888888888887
Q ss_pred CChhhhhhhhcCCCCCcEEEeccccchh---HHHhcCcccceeccccccchhhh---cccCCCcceeEeecCC----cCc
Q 009616 286 FNDQEFHPLISKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI---NVDAPNLVSFDFEDNP----IPI 355 (531)
Q Consensus 286 ~~~~~~~~~l~~~~~L~~L~L~~c~~l~---~l~~~~~~L~~L~l~~c~~L~~l---~~~~~nL~sl~~~~~~----~p~ 355 (531)
+++. ++..+.++++|+.|++++|.... ......++|+.|++.+|.-...+ ....++|+.+.+.+.. .|.
T Consensus 248 l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 248 LTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred eccc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 7743 44556778888888888775322 12223456777777665311111 1123455555554443 244
Q ss_pred eecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeee
Q 009616 356 VSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVL 405 (531)
Q Consensus 356 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~ 405 (531)
.+..+++|+.|+++. +.. .+.++..+..+++|+.|+++.|...+.
T Consensus 327 ~~~~l~~L~~L~L~~-n~l----~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 327 ALTSLPRLQVLQLWS-NKF----SGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred hHhcCCCCCEEECcC-CCC----cCcCChHHhCCCCCcEEECCCCeeEee
Confidence 455677777777763 222 223344556667777777766555443
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-18 Score=159.83 Aligned_cols=268 Identities=21% Similarity=0.292 Sum_probs=134.6
Q ss_pred CCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhh------hccCCeeeeecCccccccccccccccchhhhhhhhhhhHh
Q 009616 10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF------QTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKS 83 (531)
Q Consensus 10 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~l------w~~~~~L~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 83 (531)
+..|||||+..||+.|+.||+.+.+.|||||.++ |.. ++.....+-+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p------------------------ 150 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP------------------------ 150 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh------------------------
Confidence 6789999999999999999999999999999976 554 3333333300
Q ss_pred HHHHHHHHHHHhcccccCCCccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEeeecCCCccccCCccccCCCCc
Q 009616 84 LRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLL 163 (531)
Q Consensus 84 ~~~f~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L 163 (531)
....+.+ .+ ++..|++. .... . ...+... ....+.+++.+||+. .......+-.-+..|+.|
T Consensus 151 -----~~l~~l~----~r--gV~v~Rla--r~~~-~-~prlae~-~~~frsRlq~lDLS~--s~it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 151 -----DVLGRLL----SR--GVIVFRLA--RSFM-D-QPRLAEH-FSPFRSRLQHLDLSN--SVITVSTLHGILSQCSKL 212 (419)
T ss_pred -----hHHHHHH----hC--CeEEEEcc--hhhh-c-Cchhhhh-hhhhhhhhHHhhcch--hheeHHHHHHHHHHHHhh
Confidence 1122222 11 22222222 1100 0 0001000 011223566666665 111112222223345555
Q ss_pred cEEEecCCcCCC--CcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEee
Q 009616 164 TSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFT 240 (531)
Q Consensus 164 ~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~ 240 (531)
+.|.|.|+++.. ...++.-.+|+.|+|+.+.- +..+++-++++|+.|.+|+|+.|....+.
T Consensus 213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~---------------- 276 (419)
T KOG2120|consen 213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK---------------- 276 (419)
T ss_pred hhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh----------------
Confidence 555555555544 22333344455555544432 44444444455555555555555433221
Q ss_pred ccccceeee--eCCcccEEEecccc-----ccceeeccCCCCccEEEEeCC-CCChhhhhhhhcCCCCCcEEEeccccch
Q 009616 241 YQELESVEI--AVPSLQQLELSFSR-----VPRLLDVAECPHLRKLVLFLP-HFNDQEFHPLISKFPLLEDLSIISLETL 312 (531)
Q Consensus 241 ~~~l~~~~~--~~~~L~~L~l~~~~-----~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~~l~~~~~L~~L~L~~c~~l 312 (531)
..+.+ --++|..|+++|+. .....-...||+|..|+|+.+ .++. .....+-+++.|++|.++.|..+
T Consensus 277 ----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 277 ----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred ----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCC
Confidence 00000 12455555555554 111112345677777777543 3454 34445667888888888888764
Q ss_pred hHHH----hcCcccceecccccc---chhhhcccCCCc
Q 009616 313 ERIM----ISSNRLMHLEVYNCS---GLNRINVDAPNL 343 (531)
Q Consensus 313 ~~l~----~~~~~L~~L~l~~c~---~L~~l~~~~~nL 343 (531)
..-. ...|.|.+|++.+|- .++.+....|++
T Consensus 352 ~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~l 389 (419)
T KOG2120|consen 352 IPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHL 389 (419)
T ss_pred ChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccc
Confidence 3221 124678888888763 334444444454
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=6.3e-17 Score=161.24 Aligned_cols=170 Identities=16% Similarity=0.176 Sum_probs=94.4
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le 211 (531)
++++++.+.. .....+|........|+.|+|.+|.+.. ...+..+|.|++|||+.|.++.-..+ .+..-++++
T Consensus 102 ~nLq~v~l~~----N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~ 176 (873)
T KOG4194|consen 102 PNLQEVNLNK----NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIK 176 (873)
T ss_pred Ccceeeeecc----chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCce
Confidence 4677776654 4556666655555667777777776655 34455677777777777766331111 123345677
Q ss_pred eEEeeecCC--cceeeccccccccEEEEEeec-cccceeee-eCCcccEEEecccc--ccceeeccCCCCccEEEEeCCC
Q 009616 212 DLSFFYCFG--LKRLRISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH 285 (531)
Q Consensus 212 ~L~L~~c~~--~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~ 285 (531)
+|+|++|.. ++.-.+.++.+|..|.++.|. ..++...+ ++|.|+.|+|..|. ......|.++++|+.|.|..|.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 777777754 222233445566666676665 33333333 46777777776666 1123345666666666665555
Q ss_pred CChhhhhhhhcCCCCCcEEEeccc
Q 009616 286 FNDQEFHPLISKFPLLEDLSIISL 309 (531)
Q Consensus 286 ~~~~~~~~~l~~~~~L~~L~L~~c 309 (531)
+.. .-...+-.+.+++.|+|+.+
T Consensus 257 I~k-L~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 257 ISK-LDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred ccc-ccCcceeeecccceeecccc
Confidence 442 11122334555555555543
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.60 E-value=3.6e-17 Score=157.33 Aligned_cols=336 Identities=19% Similarity=0.202 Sum_probs=180.7
Q ss_pred cCC-CCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhccCCeeeeecCccccccccccccccchhhhhhhhhhhHhHHHH
Q 009616 9 HIS-DLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKF 87 (531)
Q Consensus 9 ~is-~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~~~~~L~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~f 87 (531)
-++ .||.|++.+|||+|+++.++|++++|+-|..+--. ...+...+.++.++| .+
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD--~~~~q~idL~t~~rD-------v~--------------- 125 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD--GSCWQHIDLFTFQRD-------VD--------------- 125 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc--cccceeeehhcchhc-------CC---------------
Confidence 344 49999999999999999999999999999976211 111222222222211 00
Q ss_pred HHHHHHHhcccccCCCccceEEEEEeeccccCCchhHHHHHHHH--HHcCCcEEEEeeecCCCccccCCcc-----ccCC
Q 009616 88 IRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELA--MENGVKELDFEVITDKNSVNALPQT-----IFSA 160 (531)
Q Consensus 88 ~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~--~~~~l~~L~L~~~~~~~~~~~lp~~-----l~~~ 160 (531)
...|..++ .+-++.++.++++-... .-++-+..+ ..+++++|.+.+. +.+... -..|
T Consensus 126 g~VV~~~~---~Rcgg~lk~LSlrG~r~-------v~~sslrt~~~~CpnIehL~l~gc------~~iTd~s~~sla~~C 189 (483)
T KOG4341|consen 126 GGVVENMI---SRCGGFLKELSLRGCRA-------VGDSSLRTFASNCPNIEHLALYGC------KKITDSSLLSLARYC 189 (483)
T ss_pred CcceehHh---hhhcccccccccccccc-------CCcchhhHHhhhCCchhhhhhhcc------eeccHHHHHHHHHhc
Confidence 11233334 22336667666663321 111112222 2246777765541 122211 1246
Q ss_pred CCccEEEecCCcC-CC---CcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCcceeec----ccccc
Q 009616 161 KLLTSLKLFGCKL-EQ---PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRI----SEAHK 231 (531)
Q Consensus 161 ~~L~~L~L~~~~l-~~---~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~----~~l~~ 231 (531)
+.|++|+|..|.. +. ......|++|++|+++.+.. .+..++.+..+|..++.+.+++|...+.-.+ ..++.
T Consensus 190 ~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~ 269 (483)
T KOG4341|consen 190 RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE 269 (483)
T ss_pred chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChH
Confidence 7777777777632 22 11234567777777776654 5555666666777777776666655443111 13455
Q ss_pred ccEEEEEeec----cccceeeeeCCcccEEEeccccc--cc--eeeccCCCCccEEEEeCCC-CChhhhhhhhcCCCCCc
Q 009616 232 LKSLILRFTY----QELESVEIAVPSLQQLELSFSRV--PR--LLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLE 302 (531)
Q Consensus 232 L~~L~l~~~~----~~l~~~~~~~~~L~~L~l~~~~~--~~--~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~L~ 302 (531)
+.++++..|. ..+..+.-.+..|+.+.++++.. .. ..-..++++|+.|.+..+. +++..+..+-.+++.|+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 5566655554 11222233567777777777761 11 1123456778877775544 66555666667777888
Q ss_pred EEEeccccc-----hhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChh
Q 009616 303 DLSIISLET-----LERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTH 377 (531)
Q Consensus 303 ~L~L~~c~~-----l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~ 377 (531)
.+++..|.. +..+...++.|+.+.++.|.......+. .+ . ...-.+..|..+.++. .-.
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~--~l---~-------~~~c~~~~l~~lEL~n----~p~ 413 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR--HL---S-------SSSCSLEGLEVLELDN----CPL 413 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh--hh---h-------hccccccccceeeecC----CCC
Confidence 888877754 3334445677777777766543222000 00 0 0011234566666663 112
Q ss_pred hhhhHHHHHhhccccceeEEEee
Q 009616 378 WYLNLMEFIGAFNQIGELHLSLN 400 (531)
Q Consensus 378 ~~~~l~~~l~~l~~L~~L~L~~~ 400 (531)
.....-+.+.++++||.+++...
T Consensus 414 i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 414 ITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred chHHHHHHHhhCcccceeeeech
Confidence 23334466677777777776643
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.55 E-value=6.4e-16 Score=154.18 Aligned_cols=269 Identities=16% Similarity=0.101 Sum_probs=160.6
Q ss_pred cCCcEEEEeeecCCCccccCCcccc-CCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.-++.|||+. .....+|..-+ .-.++++|+|++|+++. ...+.++.+|.+|.|++|+++.- .+..+.++|.|
T Consensus 149 ~alrslDLSr----N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L 223 (873)
T KOG4194|consen 149 PALRSLDLSR----NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKL 223 (873)
T ss_pred hhhhhhhhhh----chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchh
Confidence 4577777765 23344443323 34678888888888876 55667788888888888888542 34556778888
Q ss_pred ceEEeeecCC--cceeeccccccccEEEEEeec-ccccee-eeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCC
Q 009616 211 EDLSFFYCFG--LKRLRISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP 284 (531)
Q Consensus 211 e~L~L~~c~~--~~~l~~~~l~~L~~L~l~~~~-~~l~~~-~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~ 284 (531)
+.|+|..|.. .+.+.+.++++|+.|.+..|. ..+..- ...+.+++.|+|+.|. .....++-++++|+.|+|++|
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 8888888754 334556678888888888776 333332 3367788888888777 223345667788888888887
Q ss_pred CCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCc
Q 009616 285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPL 364 (531)
Q Consensus 285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~ 364 (531)
.|..- -...-+-++.|+.|+|+++.. +. |..=.+.....|+.+.++.+.+.++. .-.+..+++|+
T Consensus 304 aI~ri-h~d~WsftqkL~~LdLs~N~i-~~-------l~~~sf~~L~~Le~LnLs~Nsi~~l~------e~af~~lssL~ 368 (873)
T KOG4194|consen 304 AIQRI-HIDSWSFTQKLKELDLSSNRI-TR-------LDEGSFRVLSQLEELNLSHNSIDHLA------EGAFVGLSSLH 368 (873)
T ss_pred hhhee-ecchhhhcccceeEecccccc-cc-------CChhHHHHHHHhhhhcccccchHHHH------hhHHHHhhhhh
Confidence 77632 222334567888888877431 11 11111222334455555444432221 01233466777
Q ss_pred EEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 365 NVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 365 ~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
+|+++. +.+..-..+ ....+..++.|++|.+.+|..+. ||+- -+..+.+|+||+|..|
T Consensus 369 ~LdLr~-N~ls~~IED-aa~~f~gl~~LrkL~l~gNqlk~---I~kr-----Afsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 369 KLDLRS-NELSWCIED-AAVAFNGLPSLRKLRLTGNQLKS---IPKR-----AFSGLEALEHLDLGDN 426 (873)
T ss_pred hhcCcC-CeEEEEEec-chhhhccchhhhheeecCceeee---cchh-----hhccCcccceecCCCC
Confidence 777764 333322222 23445567777777777555443 4421 2344677777777766
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.51 E-value=4.8e-14 Score=162.48 Aligned_cols=272 Identities=18% Similarity=0.169 Sum_probs=143.3
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
.++.|.+.. .....+|..+ ...+|+.|++++|.+.. +.+...+++|+.|+|+++.... .++. ++.+++|+.|
T Consensus 590 ~Lr~L~~~~----~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 590 KLRLLRWDK----YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETL 662 (1153)
T ss_pred ccEEEEecC----CCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEE
Confidence 566666654 2345566554 45777778877777665 5566677777777777654311 1222 4567777777
Q ss_pred EeeecCCcceee--ccccccccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCC
Q 009616 214 SFFYCFGLKRLR--ISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFN 287 (531)
Q Consensus 214 ~L~~c~~~~~l~--~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~ 287 (531)
+|.+|..+..++ +.++++|+.|++++|. ..++. .+++++|+.|++++|. ...|. ..++|+.|+++++.++
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GINLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE 738 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cCCCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc
Confidence 777776655543 3356677777777765 22221 1255666666666664 11111 1234455555444432
Q ss_pred hh----------------------------hhhhhhcCCCCCcEEEeccccchhHHH---hcCcccceeccccccchhhh
Q 009616 288 DQ----------------------------EFHPLISKFPLLEDLSIISLETLERIM---ISSNRLMHLEVYNCSGLNRI 336 (531)
Q Consensus 288 ~~----------------------------~~~~~l~~~~~L~~L~L~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~l 336 (531)
.- ..+.....+++|+.|+|++|..+..+. ..+++|+.|++.+|.+++.+
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 10 000001123466666666665433322 23456677777777666554
Q ss_pred cc--cCCCcceeEeecCCcCcee-cCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccc
Q 009616 337 NV--DAPNLVSFDFEDNPIPIVS-TNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRS 413 (531)
Q Consensus 337 ~~--~~~nL~sl~~~~~~~p~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~ 413 (531)
.. ..++|+.+.++++..-..+ ....+|+.|+++. +.+ ..++..+.++++|+.|++..+..... +|
T Consensus 819 P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~-n~i-----~~iP~si~~l~~L~~L~L~~C~~L~~--l~---- 886 (1153)
T PLN03210 819 PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR-TGI-----EEVPWWIEKFSNLSFLDMNGCNNLQR--VS---- 886 (1153)
T ss_pred CCCCCccccCEEECCCCCccccccccccccCEeECCC-CCC-----ccChHHHhcCCCCCEEECCCCCCcCc--cC----
Confidence 32 2345566666554321111 1134667777763 221 12344556677777777665443333 44
Q ss_pred cCCCCCCCcccceEEEEE
Q 009616 414 CHPSLPLQVESLSLFMES 431 (531)
Q Consensus 414 ~~~~~~~~~~L~~L~L~~ 431 (531)
+.+..+++|+.+.+..
T Consensus 887 --~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 887 --LNISKLKHLETVDFSD 902 (1153)
T ss_pred --cccccccCCCeeecCC
Confidence 1344455555555554
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.44 E-value=5.2e-13 Score=154.03 Aligned_cols=256 Identities=18% Similarity=0.150 Sum_probs=161.3
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.++++|++.. .....+|..+..+++|+.|+|++|.... .+.++.+++|++|+|++|... ..++..+.++++|+.
T Consensus 611 ~~L~~L~L~~----s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 611 ENLVKLQMQG----SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLED 685 (1153)
T ss_pred cCCcEEECcC----ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCE
Confidence 4677777754 2344566667777888888888764333 445677888888888876542 235555777888888
Q ss_pred EEeeecCCcceeecc-ccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccceeec--------------------
Q 009616 213 LSFFYCFGLKRLRIS-EAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDV-------------------- 270 (531)
Q Consensus 213 L~L~~c~~~~~l~~~-~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~-------------------- 270 (531)
|++++|..++.++.. ++++|+.|++++|. .+..+....++|++|+++++. ...|..+
T Consensus 686 L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 686 LDMSRCENLEILPTGINLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred EeCCCCCCcCccCCcCCCCCCCEEeCCCCC-CccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence 888888777766543 56788888888876 333332234677888887776 3222211
Q ss_pred ----------cCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhc--Ccccceeccccccchhhhcc
Q 009616 271 ----------AECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMIS--SNRLMHLEVYNCSGLNRINV 338 (531)
Q Consensus 271 ----------~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~--~~~L~~L~l~~c~~L~~l~~ 338 (531)
...++|+.|+|++|..... ++..++++++|+.|+|++|..++.+... .++|+.|++++|.+++.+.-
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 1124666777766654433 4445677888888888888766554332 46778888888877766544
Q ss_pred cCCCcceeEeecCCc---CceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeee
Q 009616 339 DAPNLVSFDFEDNPI---PIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY 401 (531)
Q Consensus 339 ~~~nL~sl~~~~~~~---p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 401 (531)
...+++.+.+.+..+ |.++..+++|+.|++++++.... ++..+..+++|+.+.++.+.
T Consensus 844 ~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 844 ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCCCc
Confidence 445677777666543 45566778888888864222221 22334566677777766443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.41 E-value=7.7e-15 Score=147.47 Aligned_cols=261 Identities=20% Similarity=0.150 Sum_probs=187.6
Q ss_pred CCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-
Q 009616 147 KNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL- 224 (531)
Q Consensus 147 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l- 224 (531)
.-....+|..++.+..|+.|+|+.|++.. |..+..-+++-.|+|++|.+.. ....++.++.-|-.|+|++|.. ..+
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrL-e~LP 166 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRL-EMLP 166 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchh-hhcC
Confidence 34556899999999999999999999987 8888888999999999998832 3455677888888999988864 322
Q ss_pred -eccccccccEEEEEeec---cccceeeeeCCcccEEEecccc---ccceeeccCCCCccEEEEeCCCCChhhhhhhhcC
Q 009616 225 -RISEAHKLKSLILRFTY---QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISK 297 (531)
Q Consensus 225 -~~~~l~~L~~L~l~~~~---~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 297 (531)
.+..+..|++|++++|. ..+..+ -.+++|+.|++++.. ..+|.++..+.+|..++++.|++.. +++.+-+
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~ 243 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYK 243 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhh
Confidence 24467789999999886 111111 145678888888877 6678889999999999999998863 5666778
Q ss_pred CCCCcEEEeccccc------------hhHHHhcCcccceeccccc--cchhhhcccCCCcceeEeecCCcCceecCCCCC
Q 009616 298 FPLLEDLSIISLET------------LERIMISSNRLMHLEVYNC--SGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCP 363 (531)
Q Consensus 298 ~~~L~~L~L~~c~~------------l~~l~~~~~~L~~L~l~~c--~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L 363 (531)
+++|+.|+|+++.. ++.+..+-++|..|.-.-| ++|+.+-.+.++| .+ ..+|..+|.+.+|
T Consensus 244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL---~F--eGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL---TF--EGIPSGIGKLIQL 318 (1255)
T ss_pred hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc---cc--cCCccchhhhhhh
Confidence 99999999998642 2233333344444432223 4566665555554 22 2467777888888
Q ss_pred cEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 364 LNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 364 ~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
+.+...+ .....+++.+..|+.|+.|.|..|.. .+ +|+ .+--++.|+.|++..|
T Consensus 319 evf~aan------N~LElVPEglcRC~kL~kL~L~~NrL--iT-LPe------aIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 319 EVFHAAN------NKLELVPEGLCRCVKLQKLKLDHNRL--IT-LPE------AIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHHhhc------cccccCchhhhhhHHHHHhcccccce--ee-chh------hhhhcCCcceeeccCC
Confidence 8877763 23345678889999999999986654 33 773 4556789999999965
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.37 E-value=1.6e-15 Score=152.32 Aligned_cols=272 Identities=15% Similarity=0.135 Sum_probs=181.7
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.++++|.+.- .....+-..+..++.|+++.+..|++.. |+.+..+.-|+.|+|++|++.+ .+.-+....++
T Consensus 55 qkLEHLs~~H----N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~ 128 (1255)
T KOG0444|consen 55 QKLEHLSMAH----NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNS 128 (1255)
T ss_pred hhhhhhhhhh----hhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh--cchhhhhhcCc
Confidence 3677776643 3344455556677888888888887754 7777888888888888888743 44556677888
Q ss_pred ceEEeeecCCcceee---ccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-cc-ceeeccCCCCccEEEEeCC
Q 009616 211 EDLSFFYCFGLKRLR---ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLP 284 (531)
Q Consensus 211 e~L~L~~c~~~~~l~---~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~L~~~ 284 (531)
-.|+|++|+. ..++ ..++..|-.||+++|. ..+++-...+.+|++|.|++|. .. ..-.+..+++|+.|++++.
T Consensus 129 iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 129 IVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEEcccCcc-ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 8888888764 2222 2246778888888887 5566555677888999999887 22 2224566777888888887
Q ss_pred CCChhhhhhhhcCCCCCcEEEeccccc--hhHHHhcCcccceecccc------------ccchhhhcccCCCcceeEeec
Q 009616 285 HFNDQEFHPLISKFPLLEDLSIISLET--LERIMISSNRLMHLEVYN------------CSGLNRINVDAPNLVSFDFED 350 (531)
Q Consensus 285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~--l~~l~~~~~~L~~L~l~~------------c~~L~~l~~~~~nL~sl~~~~ 350 (531)
+-|-..++..+..+.||..++++.++. +..-....++|+.|++++ ..+++.+.++.+.|..
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~----- 282 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV----- 282 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-----
Confidence 777666777777888899999886542 222222345666666665 2345555555555432
Q ss_pred CCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEE
Q 009616 351 NPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFME 430 (531)
Q Consensus 351 ~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~ 430 (531)
.|.....++.|++|.+.. +.. ....++..++.+.+|+.+....|. ... +| ..+..+..|+.|.|.
T Consensus 283 --LP~avcKL~kL~kLy~n~-NkL---~FeGiPSGIGKL~~Levf~aanN~--LEl-VP------EglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 283 --LPDAVCKLTKLTKLYANN-NKL---TFEGIPSGIGKLIQLEVFHAANNK--LEL-VP------EGLCRCVKLQKLKLD 347 (1255)
T ss_pred --chHHHhhhHHHHHHHhcc-Ccc---cccCCccchhhhhhhHHHHhhccc--ccc-Cc------hhhhhhHHHHHhccc
Confidence 266666788888888863 222 233455667777888877666443 333 67 267788899999998
Q ss_pred Ee
Q 009616 431 SF 432 (531)
Q Consensus 431 ~~ 432 (531)
.|
T Consensus 348 ~N 349 (1255)
T KOG0444|consen 348 HN 349 (1255)
T ss_pred cc
Confidence 77
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=3.1e-11 Score=120.35 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=42.3
Q ss_pred CCcEEEEeeecC-CCccccCCccccCCCCccEEEecCCcCCC--------CcCCCCCCccCEEEeeeEEechH---hHHH
Q 009616 135 GVKELDFEVITD-KNSVNALPQTIFSAKLLTSLKLFGCKLEQ--------PSHCANLQSLKKLSLDEVYVNDQ---MVQS 202 (531)
Q Consensus 135 ~l~~L~L~~~~~-~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--------~~~~~~l~~L~~L~L~~~~~~~~---~l~~ 202 (531)
+++++++....- ......++..+...++|++|+++++.+.+ +..+..+++|++|++++|.+... .+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 477777665110 00112344445555667777777665541 12334456666666666665321 1222
Q ss_pred HHhCCcccceEEeeecCC
Q 009616 203 LVRECRVLEDLSFFYCFG 220 (531)
Q Consensus 203 ~l~~~~~Le~L~L~~c~~ 220 (531)
+..+ ++|++|++++|..
T Consensus 104 l~~~-~~L~~L~ls~~~~ 120 (319)
T cd00116 104 LLRS-SSLQELKLNNNGL 120 (319)
T ss_pred Hhcc-CcccEEEeeCCcc
Confidence 2222 4466666666654
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.16 E-value=7.9e-11 Score=127.27 Aligned_cols=255 Identities=19% Similarity=0.157 Sum_probs=157.6
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.+-..|+++. .....+|..+. ++|+.|++++|++.. |. ..++|++|+|++|.++. ++. ..++|++
T Consensus 201 ~~~~~LdLs~----~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGE----SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLE 266 (788)
T ss_pred CCCcEEEcCC----CCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccce
Confidence 4566677764 34557888765 479999999999887 43 36899999999998853 332 2478999
Q ss_pred EEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhh
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 291 (531)
|++.+|... .++. ...+|+.|++++|. +..+....++|+.|++++|. ...|. ...+|+.|++++|.++. +
T Consensus 267 L~Ls~N~L~-~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~--L 337 (788)
T PRK15387 267 LSIFSNPLT-HLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS--L 337 (788)
T ss_pred eeccCCchh-hhhh-chhhcCEEECcCCc--cccccccccccceeECCCCccccCCC---CcccccccccccCcccc--c
Confidence 999888642 2221 12578889998886 22222245789999999987 33332 12367888888888763 2
Q ss_pred hhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEee
Q 009616 292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNF 371 (531)
Q Consensus 292 ~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~ 371 (531)
+.+ .++|+.|+|++|. +..+....++|+.|.+.+. .+..+.-...+|+.+.+.+..+...-...++|+.|++++
T Consensus 338 P~l---p~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~- 411 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQ-LASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG- 411 (788)
T ss_pred ccc---ccccceEecCCCc-cCCCCCCCcccceehhhcc-ccccCcccccccceEEecCCcccCCCCcccCCCEEEccC-
Confidence 322 2478889888764 2223223345666665542 232222222355556555544321001235788999985
Q ss_pred ccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009616 372 GDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (531)
Q Consensus 372 ~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (531)
+.+.. ++.. ..+|+.|+++.|... . ||+ .+..+.+|+.|+|++|..
T Consensus 412 N~Lss-----IP~l---~~~L~~L~Ls~NqLt--~-LP~------sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 412 NRLTS-----LPML---PSGLLSLSVYRNQLT--R-LPE------SLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CcCCC-----CCcc---hhhhhhhhhccCccc--c-cCh------HHhhccCCCeEECCCCCC
Confidence 43332 1222 245777788765544 3 772 455678999999999843
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.13 E-value=3.4e-13 Score=129.40 Aligned_cols=156 Identities=18% Similarity=0.142 Sum_probs=83.4
Q ss_pred ccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeecc
Q 009616 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS 227 (531)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~ 227 (531)
....+|..+++|.+|..|++.+|++.. |+...+++.|++|+...|-++ .++.-++.+..|+-|+|..|....-..+.
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~~lPef~ 225 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRNKIRFLPEFP 225 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhcccccCCCCC
Confidence 345566666666666666666666555 444444666666666555442 24444566666666666666543333444
Q ss_pred ccccccEEEEEeec-cccceee-eeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616 228 EAHKLKSLILRFTY-QELESVE-IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304 (531)
Q Consensus 228 ~l~~L~~L~l~~~~-~~l~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L 304 (531)
+|..|++|.++.|. ..++.-. .++++|..|++.+|. ...|..+--+++|..|++++|.+++ ++.-++++ .|+.|
T Consensus 226 gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 226 GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFL 302 (565)
T ss_pred ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeeh
Confidence 55556666655554 2222222 245555555555555 4444455555555555555555553 23334444 55555
Q ss_pred Eeccc
Q 009616 305 SIISL 309 (531)
Q Consensus 305 ~L~~c 309 (531)
.+.++
T Consensus 303 ~leGN 307 (565)
T KOG0472|consen 303 ALEGN 307 (565)
T ss_pred hhcCC
Confidence 55554
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.01 E-value=2.4e-11 Score=128.18 Aligned_cols=146 Identities=21% Similarity=0.163 Sum_probs=74.7
Q ss_pred CCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce-eeccccccccEEEEEe
Q 009616 161 KLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRISEAHKLKSLILRF 239 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~-l~~~~l~~L~~L~l~~ 239 (531)
++|+.|+...|.+........-.+|++++++.+.+.. ++.+++.|++|+.++..+|....- ..+....+|+.|.+..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhc--chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 4455555555544431111123456777777776643 557777777777777777655111 1111223344444443
Q ss_pred ec-cccceeeeeCCcccEEEecccc-cccee------------------------ec--cCCCCccEEEEeCCCCChhhh
Q 009616 240 TY-QELESVEIAVPSLQQLELSFSR-VPRLL------------------------DV--AECPHLRKLVLFLPHFNDQEF 291 (531)
Q Consensus 240 ~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~------------------------~~--~~~~~L~~L~L~~~~~~~~~~ 291 (531)
|. ..++.......+|++|++..|. ...|. .. ...+.|+.|++.+|.+++..+
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 33 2222222223333444443333 11111 11 234567777888888886655
Q ss_pred hhhhcCCCCCcEEEeccc
Q 009616 292 HPLISKFPLLEDLSIISL 309 (531)
Q Consensus 292 ~~~l~~~~~L~~L~L~~c 309 (531)
+ .+.++++|+.|+|+++
T Consensus 377 p-~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 377 P-VLVNFKHLKVLHLSYN 393 (1081)
T ss_pred h-hhccccceeeeeeccc
Confidence 4 3567888888888875
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=4e-10 Score=112.32 Aligned_cols=154 Identities=19% Similarity=0.073 Sum_probs=77.8
Q ss_pred cccCCCCccEEEecCCcCCC------CcCCCCCCccCEEEeeeEEec--hH---hHHHHHhCCcccceEEeeecCCccee
Q 009616 156 TIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVN--DQ---MVQSLVRECRVLEDLSFFYCFGLKRL 224 (531)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~--~~---~l~~~l~~~~~Le~L~L~~c~~~~~l 224 (531)
.+..+.+|++|++++|.+.. +......++|++|+++++.+. .. .+...+..+++|++|++++|......
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 33445668888888887743 223445677788887777654 22 22334556777888887777653221
Q ss_pred --ecccc---ccccEEEEEeec-c--cccee---eeeC-CcccEEEecccc-c-----cceeeccCCCCccEEEEeCCCC
Q 009616 225 --RISEA---HKLKSLILRFTY-Q--ELESV---EIAV-PSLQQLELSFSR-V-----PRLLDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 225 --~~~~l---~~L~~L~l~~~~-~--~l~~~---~~~~-~~L~~L~l~~~~-~-----~~~~~~~~~~~L~~L~L~~~~~ 286 (531)
.+..+ ++|++|++++|. . ....+ .... ++|+.|++++|. . .....+..++.|+.|+++++.+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 11112 336677776664 1 00110 1122 555555555554 1 1112233445555555555555
Q ss_pred Chhhhhh---hhcCCCCCcEEEeccc
Q 009616 287 NDQEFHP---LISKFPLLEDLSIISL 309 (531)
Q Consensus 287 ~~~~~~~---~l~~~~~L~~L~L~~c 309 (531)
++..... .+..+++|+.|++++|
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCC
Confidence 5432222 1223345555555554
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.98 E-value=9.6e-12 Score=131.06 Aligned_cols=298 Identities=18% Similarity=0.172 Sum_probs=159.1
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
+++.|.++. ...+..|.+..+.++|++|.|.+|.+.. |.++..+.+|++|+++.|.+.. ++..+..+..++.+
T Consensus 69 ~L~~ln~s~----n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 69 HLRQLNLSR----NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEEL 142 (1081)
T ss_pred HHhhcccch----hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHH
Confidence 566666643 3455677777777888888888877766 7777777888888888877732 23334444444444
Q ss_pred EeeecCC-------------------cceeeccccccccE-EEEEeec-------------------cccceeeeeCCcc
Q 009616 214 SFFYCFG-------------------LKRLRISEAHKLKS-LILRFTY-------------------QELESVEIAVPSL 254 (531)
Q Consensus 214 ~L~~c~~-------------------~~~l~~~~l~~L~~-L~l~~~~-------------------~~l~~~~~~~~~L 254 (531)
..++|.. .+.+.+. ...|+. |++.+|. ..+..+...-++|
T Consensus 143 ~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~-i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l 221 (1081)
T KOG0618|consen 143 AASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID-IYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSL 221 (1081)
T ss_pred hhhcchhhhhhccccchhhhhhhhhcccchhcc-hhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcch
Confidence 4444411 1111110 112222 3433332 1233444556777
Q ss_pred cEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhc---Ccccceecccc--
Q 009616 255 QQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMIS---SNRLMHLEVYN-- 329 (531)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~---~~~L~~L~l~~-- 329 (531)
+.|+...|.......-..-.+|+.++++.+.++. +++++..|.+|+.+....+.. ..+... ..+|+.|.+..
T Consensus 222 ~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 222 TALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred heeeeccCcceeeccccccccceeeecchhhhhc--chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh
Confidence 7777777762211122233478888888888874 447788888888888877543 111110 11222222111
Q ss_pred ----------ccchhhhcccCCCcceeEe---------------ecCCcC--ceec--CCCCCcEEEEEeeccCChhhhh
Q 009616 330 ----------CSGLNRINVDAPNLVSFDF---------------EDNPIP--IVST--NAPCPLNVLFSNFGDIDTHWYL 380 (531)
Q Consensus 330 ----------c~~L~~l~~~~~nL~sl~~---------------~~~~~p--~~~~--~~~~L~~L~l~~~~~~~~~~~~ 380 (531)
.+.|..+++..++|.+|.- +...++ .+.+ ..+.|+.|.+.+ +...+
T Consensus 299 l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-----N~Ltd 373 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-----NHLTD 373 (1081)
T ss_pred hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-----Ccccc
Confidence 2233344444444433221 000000 0111 234455666652 33333
Q ss_pred hHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhcccccee
Q 009616 381 NLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLC 460 (531)
Q Consensus 381 ~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~ 460 (531)
..-..+.++.+||.|+|+.|.... +|. ..+.++..|++|.|++| + ...+-+-+..+.+++||.
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~---fpa-----s~~~kle~LeeL~LSGN-----k----L~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNS---FPA-----SKLRKLEELEELNLSGN-----K----LTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred cchhhhccccceeeeeeccccccc---CCH-----HHHhchHHhHHHhcccc-----h----hhhhhHHHHhhhhhHHHh
Confidence 334567788899999988765432 452 13557888899999988 2 444445555566667766
Q ss_pred ecCC
Q 009616 461 LSPE 464 (531)
Q Consensus 461 l~~~ 464 (531)
..+-
T Consensus 437 ahsN 440 (1081)
T KOG0618|consen 437 AHSN 440 (1081)
T ss_pred hcCC
Confidence 6543
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.96 E-value=1.7e-09 Score=117.00 Aligned_cols=131 Identities=18% Similarity=0.101 Sum_probs=77.9
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.+++.|.+.. .....+|.. .++|++|+|++|.+.. |. ..++|+.|++++|.+.. ++.+ .+.|+.
T Consensus 222 ~~L~~L~L~~----N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~~--Lp~l---p~~L~~ 286 (788)
T PRK15387 222 AHITTLVIPD----NNLTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LPAL---PSGLCK 286 (788)
T ss_pred cCCCEEEccC----CcCCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCchhh--hhhc---hhhcCE
Confidence 4788888865 334556652 4789999999998887 43 24788899998887642 3332 356777
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCC
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFN 287 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~ 287 (531)
|++++|... .++. ..++|+.|++++|. ..++. ..++|+.|++++|. ..+|. ..++|+.|+|++|.++
T Consensus 287 L~Ls~N~Lt-~LP~-~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 287 LWIFGNQLT-SLPV-LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLA 355 (788)
T ss_pred EECcCCccc-cccc-cccccceeECCCCccccCCC---CcccccccccccCccccccc---cccccceEecCCCccC
Confidence 777777532 2222 23667777777775 22222 12345556666555 22221 1125666666666555
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.94 E-value=1.2e-09 Score=118.91 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=94.0
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
+..+|+++. .....+|..+. ++|+.|+|++|.+.. |..+ +++|++|++++|.++. ++..+ .++|+.|
T Consensus 179 ~~~~L~L~~----~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L 246 (754)
T PRK15370 179 NKTELRLKI----LGLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQEM 246 (754)
T ss_pred CceEEEeCC----CCcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hccccEE
Confidence 466666654 34456676553 578888888888876 4433 3588888888887742 33322 2478888
Q ss_pred EeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhh
Q 009616 214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (531)
Q Consensus 214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 291 (531)
+|++|... .++..-..+|+.|++++|. ..++.. -.++|+.|++++|. ...|..+. ++|+.|++++|.++. +
T Consensus 247 ~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~--l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~--L 319 (754)
T PRK15370 247 ELSINRIT-ELPERLPSALQSLDLFHNKISCLPEN--LPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA--L 319 (754)
T ss_pred ECcCCccC-cCChhHhCCCCEEECcCCccCccccc--cCCCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc--C
Confidence 88887643 3332222478888888775 222221 12478888888877 33332222 467777787777763 2
Q ss_pred hhhhcCCCCCcEEEecccc
Q 009616 292 HPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 292 ~~~l~~~~~L~~L~L~~c~ 310 (531)
+..+ .++|+.|++++|.
T Consensus 320 P~~l--~~sL~~L~Ls~N~ 336 (754)
T PRK15370 320 PETL--PPGLKTLEAGENA 336 (754)
T ss_pred Cccc--cccceeccccCCc
Confidence 2111 2577777777764
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.90 E-value=2.8e-11 Score=103.42 Aligned_cols=149 Identities=20% Similarity=0.153 Sum_probs=94.8
Q ss_pred cccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce-eecccccccc
Q 009616 156 TIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRISEAHKLK 233 (531)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~-l~~~~l~~L~ 233 (531)
.++.+...+.|.|+.|+++. |+.++.+.+|+.|++++|++.+ ++..++++|.|+.|++.-|....- -.++++|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 35566777777788877776 7777778888888887777643 555577777777777765543211 1234567777
Q ss_pred EEEEEeec---cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecc
Q 009616 234 SLILRFTY---QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIIS 308 (531)
Q Consensus 234 ~L~l~~~~---~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~ 308 (531)
.||+++|. ..++.-.+.+..|+.|++++|. ...|..++.+++|+.|.+..|.+-. ++.-++.+..|+.|++.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence 77777665 2233333445566667777776 5556667777777777776665432 344455566666666665
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.90 E-value=1.6e-10 Score=112.08 Aligned_cols=223 Identities=21% Similarity=0.260 Sum_probs=134.6
Q ss_pred CCccEEEecCCcCCC----CcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCcceeec----ccccc
Q 009616 161 KLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRI----SEAHK 231 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~----~~l~~ 231 (531)
..|+.|.++||.-.+ -....++|++++|.+.++.. ++..+..+-..|+.|++|++..|..++...+ .+|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357778888775443 22345678888888887765 6777777777788888888888877665432 26788
Q ss_pred ccEEEEEeec----cccceeeeeCCcccEEEecccccccee----eccCCCCccEEEE-eCCCCChhhhhhhhcCCCCCc
Q 009616 232 LKSLILRFTY----QELESVEIAVPSLQQLELSFSRVPRLL----DVAECPHLRKLVL-FLPHFNDQEFHPLISKFPLLE 302 (531)
Q Consensus 232 L~~L~l~~~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~L-~~~~~~~~~~~~~l~~~~~L~ 302 (531)
|++|++++|. .++.....++..++.+.+.||...... .-+.++.+.++++ ..+.+|+..+..+...+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888887 233344446667777777776521111 1234555666665 445577766666777788888
Q ss_pred EEEeccccch-----hHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChh
Q 009616 303 DLSIISLETL-----ERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTH 377 (531)
Q Consensus 303 ~L~L~~c~~l-----~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~ 377 (531)
.|..++|..+ ..+...+++|+.+.+..|..+...-.. .---+.+.|+.+++..+. ..
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft---------------~l~rn~~~Le~l~~e~~~---~~ 359 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT---------------MLGRNCPHLERLDLEECG---LI 359 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh---------------hhhcCChhhhhhcccccc---ee
Confidence 8888888663 344555677777777777654221100 000134556666664211 11
Q ss_pred hhhhHHHHHhhccccceeEEEeee
Q 009616 378 WYLNLMEFIGAFNQIGELHLSLNY 401 (531)
Q Consensus 378 ~~~~l~~~l~~l~~L~~L~L~~~~ 401 (531)
....+..+-.+++.|+.|.++.+.
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhh
Confidence 122334444566777777766443
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.5e-10 Score=111.29 Aligned_cols=152 Identities=19% Similarity=0.161 Sum_probs=106.8
Q ss_pred CCCCccEEEecCCcCCC-C--cCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCccee---ecccccc
Q 009616 159 SAKLLTSLKLFGCKLEQ-P--SHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRL---RISEAHK 231 (531)
Q Consensus 159 ~~~~L~~L~L~~~~l~~-~--~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l---~~~~l~~ 231 (531)
+.++|+...|.++.... + .....|++++.|+|++|-+ .-..+.+++.-+|+||.|+|+.|...-.. ....++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45777888888776655 2 2456788889999988877 33456677788899999999888653321 1124678
Q ss_pred ccEEEEEeec---cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEe
Q 009616 232 LKSLILRFTY---QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI 306 (531)
Q Consensus 232 L~~L~l~~~~---~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L 306 (531)
|+.|.+++|. ..+..+...+|+|+.|++.+|. .........+..|+.|+|++|++-+.........+|.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 8999999887 2233344578899999998885 3333345567788888998888765444456778888888888
Q ss_pred cccc
Q 009616 307 ISLE 310 (531)
Q Consensus 307 ~~c~ 310 (531)
+.|.
T Consensus 279 s~tg 282 (505)
T KOG3207|consen 279 SSTG 282 (505)
T ss_pred cccC
Confidence 8764
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.83 E-value=1.2e-08 Score=111.17 Aligned_cols=212 Identities=15% Similarity=0.191 Sum_probs=129.0
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.+++.|+++. .....+|..+. ++|+.|++++|.+.. |..+ .++|+.|+|++|.+.. ++..+ .++|+.
T Consensus 199 ~~L~~L~Ls~----N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~ 266 (754)
T PRK15370 199 EQITTLILDN----NELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITE--LPERL--PSALQS 266 (754)
T ss_pred cCCcEEEecC----CCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccCc--CChhH--hCCCCE
Confidence 4788888875 34457887664 589999999998887 4433 3579999999998742 33333 257999
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE 290 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~ 290 (531)
|++++|.. ..++-.-.++|+.|++++|. ..++.. -.++|+.|++++|. ...|..+ .++|+.|++++|.++.
T Consensus 267 L~Ls~N~L-~~LP~~l~~sL~~L~Ls~N~Lt~LP~~--lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-- 339 (754)
T PRK15370 267 LDLFHNKI-SCLPENLPEELRYLSVYDNSIRTLPAH--LPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-- 339 (754)
T ss_pred EECcCCcc-CccccccCCCCcEEECCCCccccCccc--chhhHHHHHhcCCccccCCccc--cccceeccccCCcccc--
Confidence 99987754 34432223589999999886 222211 12468888888887 3333222 3678888888887764
Q ss_pred hhhhhcCCCCCcEEEeccccchhHHHh-cCcccceecccccc----------chhhhcccCCCcceeEeecCCcCceecC
Q 009616 291 FHPLISKFPLLEDLSIISLETLERIMI-SSNRLMHLEVYNCS----------GLNRINVDAPNLVSFDFEDNPIPIVSTN 359 (531)
Q Consensus 291 ~~~~l~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~----------~L~~l~~~~~nL~sl~~~~~~~p~~~~~ 359 (531)
++..+ .++|+.|++++|.. ..+.. ..+.|+.|++.+|. .|+.+++..+++..+. ..+|.....
T Consensus 340 LP~~l--~~sL~~L~Ls~N~L-~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~LP---~sl~~~~~~ 413 (754)
T PRK15370 340 LPASL--PPELQVLDVSKNQI-TVLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLP---ESLPHFRGE 413 (754)
T ss_pred CChhh--cCcccEEECCCCCC-CcCChhhcCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcccCc---hhHHHHhhc
Confidence 22222 36888888888743 22211 12467777776643 2344444444442210 011222334
Q ss_pred CCCCcEEEEEe
Q 009616 360 APCPLNVLFSN 370 (531)
Q Consensus 360 ~~~L~~L~l~~ 370 (531)
.+++..+++.+
T Consensus 414 ~~~l~~L~L~~ 424 (754)
T PRK15370 414 GPQPTRIIVEY 424 (754)
T ss_pred CCCccEEEeeC
Confidence 56777888874
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.78 E-value=6.9e-11 Score=101.07 Aligned_cols=148 Identities=20% Similarity=0.182 Sum_probs=117.8
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
++..|.++- .....+|+.+..+.+|++|++.+|++.. |..++.++.|+.|++.-|++. .++.-++.+|.||.|
T Consensus 34 ~ITrLtLSH----NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levl 107 (264)
T KOG0617|consen 34 NITRLTLSH----NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhccc----CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhh
Confidence 344455542 4556788888999999999999999888 888999999999999877663 356668899999999
Q ss_pred EeeecCCcceeec---cccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCCh
Q 009616 214 SFFYCFGLKRLRI---SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND 288 (531)
Q Consensus 214 ~L~~c~~~~~l~~---~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~ 288 (531)
+|.+|...+..-. -.+..|+-|.++.|+ ..++.-...+++|+.|.+..|. ...|..++.++.|++|++.+|.++.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence 9998876443222 235788999999887 5556666688999999999998 7778899999999999999999874
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.77 E-value=4.7e-11 Score=114.94 Aligned_cols=251 Identities=17% Similarity=0.127 Sum_probs=119.0
Q ss_pred ccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce-eeccccccccE
Q 009616 157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRISEAHKLKS 234 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~-l~~~~l~~L~~ 234 (531)
+.++..|++|++..|++.. |+.++.+..++.|+.++|.+.. ++.-+.+.+.|.+|+.++|....- -.++.+..|..
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 3344445555555554444 4444555555555555444321 333344444445554444433221 11223334444
Q ss_pred EEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccch
Q 009616 235 LILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL 312 (531)
Q Consensus 235 L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l 312 (531)
++-.+|. ..++.-..++.+|..+.+.+|. ...|...-+++.|++|+...|-++ .++.-++.+..|+.|+|..+
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~N--- 216 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRN--- 216 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhc---
Confidence 4444443 2333333344444444444444 222223333455555554444332 12223344444444444432
Q ss_pred hHHHhcCccccee-ccccccchhhhcccCCCcceeEeecCCcCceec-CCCCCcEEEEEeeccCChhhhhhHHHHHhhcc
Q 009616 313 ERIMISSNRLMHL-EVYNCSGLNRINVDAPNLVSFDFEDNPIPIVST-NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFN 390 (531)
Q Consensus 313 ~~l~~~~~~L~~L-~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~ 390 (531)
+++.+ .+.+|+.|+++..+.+.++. +|...+ +++++..||+.. ++. ...+.-+.-+.
T Consensus 217 --------ki~~lPef~gcs~L~Elh~g~N~i~~-------lpae~~~~L~~l~vLDLRd-Nkl-----ke~Pde~clLr 275 (565)
T KOG0472|consen 217 --------KIRFLPEFPGCSLLKELHVGENQIEM-------LPAEHLKHLNSLLVLDLRD-NKL-----KEVPDEICLLR 275 (565)
T ss_pred --------ccccCCCCCccHHHHHHHhcccHHHh-------hHHHHhcccccceeeeccc-ccc-----ccCchHHHHhh
Confidence 12211 23345555555544433321 232222 577788888863 222 22334455677
Q ss_pred ccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhc
Q 009616 391 QIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIF 454 (531)
Q Consensus 391 ~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~ 454 (531)
+|+.|+++.|..+ . +| ++++.+ .|+.|.+.+| | ...+...+..++
T Consensus 276 sL~rLDlSNN~is--~-Lp------~sLgnl-hL~~L~leGN----P-----lrTiRr~ii~~g 320 (565)
T KOG0472|consen 276 SLERLDLSNNDIS--S-LP------YSLGNL-HLKFLALEGN----P-----LRTIRREIISKG 320 (565)
T ss_pred hhhhhcccCCccc--c-CC------cccccc-eeeehhhcCC----c-----hHHHHHHHHccc
Confidence 8888888855543 3 67 477777 8999999998 5 444555444444
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.8e-10 Score=104.76 Aligned_cols=168 Identities=21% Similarity=0.267 Sum_probs=99.2
Q ss_pred cCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEEEeecc----ccceeeeeCCcccEEE
Q 009616 185 LKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTYQ----ELESVEIAVPSLQQLE 258 (531)
Q Consensus 185 L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~~----~l~~~~~~~~~L~~L~ 258 (531)
|++|||++..++...+..+++.|..|+.|.|.++..-..+. +..=.+|+.|+++.|.+ ...-+..+|..|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 55555555555444555555555555555555554433221 11114555555555550 1112223566777777
Q ss_pred ecccc-cc--ceeecc-CCCCccEEEEeCCC--CChhhhhhhhcCCCCCcEEEeccccchhH----HHhcCcccceeccc
Q 009616 259 LSFSR-VP--RLLDVA-ECPHLRKLVLFLPH--FNDQEFHPLISKFPLLEDLSIISLETLER----IMISSNRLMHLEVY 328 (531)
Q Consensus 259 l~~~~-~~--~~~~~~-~~~~L~~L~L~~~~--~~~~~~~~~l~~~~~L~~L~L~~c~~l~~----l~~~~~~L~~L~l~ 328 (531)
++.|. .. ..+.+. --++|+.|+|+|.. +....+..+...||+|..|+|++|..+.. ....++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 77666 11 111222 24689999997754 33345667788999999999999976443 33457899999999
Q ss_pred cccch---hhhcc-cCCCcceeEeecCC
Q 009616 329 NCSGL---NRINV-DAPNLVSFDFEDNP 352 (531)
Q Consensus 329 ~c~~L---~~l~~-~~~nL~sl~~~~~~ 352 (531)
.|-.+ +.+.+ +.|.|.++...|+.
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEecccc
Confidence 99765 22322 55788888877754
No 26
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.75 E-value=8.1e-09 Score=70.91 Aligned_cols=36 Identities=36% Similarity=0.803 Sum_probs=31.6
Q ss_pred CCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhc
Q 009616 10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQT 45 (531)
Q Consensus 10 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~ 45 (531)
|+.||+||+.+||++|+.+|+++++.|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999998753
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.73 E-value=5.4e-09 Score=99.47 Aligned_cols=209 Identities=19% Similarity=0.240 Sum_probs=128.8
Q ss_pred CCccceEEEEEeeccccCCchhHHHHHHHHHHc--CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCC
Q 009616 102 GFPMQKLRISVSLLEVKESSPLFDKWVELAMEN--GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHC 179 (531)
Q Consensus 102 ~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~--~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~ 179 (531)
...+.++.++-. ..+....+|+....++ .+++.+++..........+|..+-.+ ...+
T Consensus 29 ~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l---------------~~aL 88 (382)
T KOG1909|consen 29 MDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML---------------SKAL 88 (382)
T ss_pred cCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH---------------HHHH
Confidence 345666655533 2367788898877654 67777766533333344555433211 0223
Q ss_pred CCCCccCEEEeeeEEec---hHhHHHHHhCCcccceEEeeecCCcc-------e----e----eccccccccEEEEEeec
Q 009616 180 ANLQSLKKLSLDEVYVN---DQMVQSLVRECRVLEDLSFFYCFGLK-------R----L----RISEAHKLKSLILRFTY 241 (531)
Q Consensus 180 ~~l~~L~~L~L~~~~~~---~~~l~~~l~~~~~Le~L~L~~c~~~~-------~----l----~~~~l~~L~~L~l~~~~ 241 (531)
..+|+|++|+|+.|.+. ...+..++++|..|++|.|.+|..-. . + .+.+-+.|+++....|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 34566666666666663 23466778889999999998885411 0 1 12234788888888887
Q ss_pred -cc--cce---eeeeCCcccEEEecccc-ccc-----eeeccCCCCccEEEEeCCCCChh---hhhhhhcCCCCCcEEEe
Q 009616 242 -QE--LES---VEIAVPSLQQLELSFSR-VPR-----LLDVAECPHLRKLVLFLPHFNDQ---EFHPLISKFPLLEDLSI 306 (531)
Q Consensus 242 -~~--l~~---~~~~~~~L~~L~l~~~~-~~~-----~~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~~~~L~~L~L 306 (531)
.. ... .....|.|+.+.+..|. .+. ...+..|+.|+.|+|..|.++.. .+...++.+++|+.|.+
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 11 111 12246889999988887 222 22467889999999988888753 34556778888999999
Q ss_pred ccccc--------hhHHHhcCcccceeccccc
Q 009616 307 ISLET--------LERIMISSNRLMHLEVYNC 330 (531)
Q Consensus 307 ~~c~~--------l~~l~~~~~~L~~L~l~~c 330 (531)
++|.. ...+....|.|+.|.+.++
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 98843 2333344556666665543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=1e-08 Score=91.33 Aligned_cols=58 Identities=29% Similarity=0.302 Sum_probs=22.9
Q ss_pred CCcccEEEecccc---ccceeeccCCCCccEEEEeCCCCChhh--hhhhhcCCCCCcEEEecc
Q 009616 251 VPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQE--FHPLISKFPLLEDLSIIS 308 (531)
Q Consensus 251 ~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~~~~L~~L~L~~ 308 (531)
+|+|++|++++|. ...-..+..+++|+.|+|.+|.++... -..++..+|+|+.||-..
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 5556666665555 111224456666666666666665421 123445566666665443
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.57 E-value=1.3e-08 Score=98.26 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=91.4
Q ss_pred CccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR 225 (531)
Q Consensus 148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~ 225 (531)
.+..++|..+. .+-+.++|..|.++. +..++.+++|+.|+|++|.++.- -+..+.+.+.|-.|-+.++..+..++
T Consensus 56 ~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 56 KGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 34455565443 355778888888876 45577899999999999887442 24446778888888888877777665
Q ss_pred ---ccccccccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCC
Q 009616 226 ---ISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH 285 (531)
Q Consensus 226 ---~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~ 285 (531)
+.++.+|+.|.+.-|. ...+.....+++|..|.+.+|. ......+..+.+++.+++.-|.
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 3366777777776665 2233334467788888887777 2223367777888888876655
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.5e-08 Score=99.01 Aligned_cols=152 Identities=20% Similarity=0.136 Sum_probs=65.5
Q ss_pred CCCCccEEEecCCcCCC----CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce---eecccccc
Q 009616 159 SAKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR---LRISEAHK 231 (531)
Q Consensus 159 ~~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~---l~~~~l~~ 231 (531)
.|++++.|+|+.|-+.. ...+..||+|+.|+|+.|++....=...-..++.|+.|.|+.|..... .....+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 34555555555544333 112234555555555555441100000011344455555555543211 00113455
Q ss_pred ccEEEEEeecccc-ceee-eeCCcccEEEecccc---ccceeeccCCCCccEEEEeCCCCChhhhhh-----hhcCCCCC
Q 009616 232 LKSLILRFTYQEL-ESVE-IAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQEFHP-----LISKFPLL 301 (531)
Q Consensus 232 L~~L~l~~~~~~l-~~~~-~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-----~l~~~~~L 301 (531)
|+.|++.+|...+ .... .....|++|+|++|. .......+.+|.|+.|.++.+.++.-..+. ....++.|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 5555555543011 1110 123345555555555 122234555666666666665554422221 23456777
Q ss_pred cEEEecccc
Q 009616 302 EDLSIISLE 310 (531)
Q Consensus 302 ~~L~L~~c~ 310 (531)
++|++..++
T Consensus 304 ~~L~i~~N~ 312 (505)
T KOG3207|consen 304 EYLNISENN 312 (505)
T ss_pred eeeecccCc
Confidence 777776654
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.43 E-value=1e-07 Score=90.87 Aligned_cols=152 Identities=17% Similarity=0.199 Sum_probs=97.9
Q ss_pred CCCCccEEEecCCcCCC------CcCCCCCCccCEEEeeeEEe---chHh------HHHHHhCCcccceEEeeecCCcce
Q 009616 159 SAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYV---NDQM------VQSLVRECRVLEDLSFFYCFGLKR 223 (531)
Q Consensus 159 ~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~---~~~~------l~~~l~~~~~Le~L~L~~c~~~~~ 223 (531)
...+++.++|++|.+.. ...+.+-++|+.-+++..-. .+.. +...+..||.|++|+|++|..-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 45778889999988765 23445567788887775432 1111 223356899999999999865221
Q ss_pred -e-----eccccccccEEEEEeecccc---------------ceeeeeCCcccEEEecccc-ccc-----eeeccCCCCc
Q 009616 224 -L-----RISEAHKLKSLILRFTYQEL---------------ESVEIAVPSLQQLELSFSR-VPR-----LLDVAECPHL 276 (531)
Q Consensus 224 -l-----~~~~l~~L~~L~l~~~~~~l---------------~~~~~~~~~L~~L~l~~~~-~~~-----~~~~~~~~~L 276 (531)
+ -+.++..|+.|.+.+|.-+. .....+.|.|+.+....|. +.. ...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 1 13457889999999886110 0112245788888888887 222 2235667888
Q ss_pred cEEEEeCCCCChh---hhhhhhcCCCCCcEEEecccc
Q 009616 277 RKLVLFLPHFNDQ---EFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 277 ~~L~L~~~~~~~~---~~~~~l~~~~~L~~L~L~~c~ 310 (531)
+.+.++.|.+... .+...+..||+|+.|+|.++.
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 8888887776543 234456678888888888764
No 32
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.32 E-value=1.9e-07 Score=64.44 Aligned_cols=37 Identities=43% Similarity=0.862 Sum_probs=31.4
Q ss_pred CCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhcc
Q 009616 10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS 46 (531)
Q Consensus 10 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~~ 46 (531)
+++||+|++.+||++|+.+|+++++.|||+|+++..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5789999999999999999999999999999997654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.22 E-value=8.4e-07 Score=79.06 Aligned_cols=110 Identities=23% Similarity=0.215 Sum_probs=34.3
Q ss_pred CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEE
Q 009616 178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQL 257 (531)
Q Consensus 178 ~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L 257 (531)
...+..++++|+|++|.+.. +..+-..+..|+.|++++|....--.+. .++.|++|
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~----------------------~L~~L~~L 69 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKLEGLP----------------------GLPRLKTL 69 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--TT--------------------------TT--EE
T ss_pred cccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccccCcc----------------------Chhhhhhc
Confidence 33445566777777776632 2221123455666666555432111111 35667777
Q ss_pred Eecccc-ccceeec-cCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616 258 ELSFSR-VPRLLDV-AECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (531)
Q Consensus 258 ~l~~~~-~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~ 311 (531)
++++|. ......+ ..+|+|+.|++++|.+.+-.-...++.+|+|+.|+|.+++-
T Consensus 70 ~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 70 DLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp E--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 777776 3332233 46899999999999987632234567899999999999763
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.21 E-value=1.6e-07 Score=87.64 Aligned_cols=127 Identities=18% Similarity=0.167 Sum_probs=95.5
Q ss_pred CCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEec
Q 009616 182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS 260 (531)
Q Consensus 182 l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~ 260 (531)
...|++|+|++|.++. +.....-.|.++.|++++|.....-.+..+++|+.||+++|. ..+..+...+.|++.|.++
T Consensus 283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4578888999887743 444456678999999999877555455667899999999887 4455555567888999999
Q ss_pred cccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 261 FSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 261 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
+|.......++.+-+|..|++++|++..-.-..-++++|.||.|.|.+++
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 88743344567778889999999988764444557889999999888865
No 35
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.21 E-value=1.4e-06 Score=57.68 Aligned_cols=34 Identities=41% Similarity=0.683 Sum_probs=31.7
Q ss_pred CChHHHHHHhcCCChHHHHHHhhhhhhhhhhhcc
Q 009616 13 LPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS 46 (531)
Q Consensus 13 LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~~ 46 (531)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987643
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.06 E-value=1.6e-05 Score=88.34 Aligned_cols=217 Identities=19% Similarity=0.118 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHhcccccCCCccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEeeecCCCccccCCccccCCCC
Q 009616 83 SLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKL 162 (531)
Q Consensus 83 ~~~~f~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~ 162 (531)
...-+...|++.|...........+++++ ....++.-|+......+-+..-+. ........|... +...
T Consensus 456 G~~~i~~LV~~~Ll~~~~~~~~~~~~kmH-------DvvRe~al~ias~~~~~~e~~iv~---~~~~~~~~~~~~-~~~~ 524 (889)
T KOG4658|consen 456 GYDYIEELVRASLLIEERDEGRKETVKMH-------DVVREMALWIASDFGKQEENQIVS---DGVGLSEIPQVK-SWNS 524 (889)
T ss_pred hHHHHHHHHHHHHHhhcccccceeEEEee-------HHHHHHHHHHhccccccccceEEE---CCcCcccccccc-chhh
Confidence 33445566666663221111233333333 224566777765544444442222 112333344332 3356
Q ss_pred ccEEEecCCcCCCCcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEEEe
Q 009616 163 LTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRF 239 (531)
Q Consensus 163 L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~ 239 (531)
.+...+.++.+...+....++.|++|-+.+|.. -.......+..+|.|..|+|++|..++.++ |+++-+||.|+++.
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 677777777654433444567888888888752 122233446778999999999888877765 56778889998888
Q ss_pred ec-cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCCh-hhhhhhhcCCCCCcEEEecccc
Q 009616 240 TY-QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFND-QEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 240 ~~-~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
+. ..+|.-..++..|.+|++..+. ...+.....+++|++|.+....... .....-+.++.+|+.|....+.
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 76 4445545567788888888776 2333445558899999885554221 2222334566667766665543
No 37
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=1.1e-06 Score=95.14 Aligned_cols=148 Identities=19% Similarity=0.179 Sum_probs=100.5
Q ss_pred CCccEEEecCCcCCC---CcCC-CCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616 161 KLLTSLKLFGCKLEQ---PSHC-ANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~---~~~~-~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~ 236 (531)
.+|++|+++|...-. +... .-||+|++|.+.+..+....+..+..++|+|..|+++++....--.++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 567777777753322 2222 348999999998888855567888888999999999887654434456677888777
Q ss_pred EEeec-cccce--eeeeCCcccEEEecccc-ccce-------eeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEE
Q 009616 237 LRFTY-QELES--VEIAVPSLQQLELSFSR-VPRL-------LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS 305 (531)
Q Consensus 237 l~~~~-~~l~~--~~~~~~~L~~L~l~~~~-~~~~-------~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~ 305 (531)
+.+-. ..... -.+++.+|+.|+++... ...+ ..-..+|+|+.||.+++.++++.+..++..-|+|+...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 76543 11111 12367888888888766 2111 11235889999999999888888888877777777766
Q ss_pred ecc
Q 009616 306 IIS 308 (531)
Q Consensus 306 L~~ 308 (531)
+-+
T Consensus 282 ~~~ 284 (699)
T KOG3665|consen 282 ALD 284 (699)
T ss_pred hhh
Confidence 544
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=1e-06 Score=91.58 Aligned_cols=206 Identities=18% Similarity=0.130 Sum_probs=124.5
Q ss_pred ccCCCccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcC
Q 009616 99 CELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSH 178 (531)
Q Consensus 99 ~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~ 178 (531)
...+++++.|+...........-......++. ....+.|.+--. ......=|-+++.+++|++|.|.+|.+....+
T Consensus 51 g~~g~~~~~f~a~~s~~ads~vl~qLq~i~d~--lqkt~~lkl~~~--pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~G 126 (1096)
T KOG1859|consen 51 GLSGAPVDYFRAYVSDNADSRVLEQLQRILDF--LQKTKVLKLLPS--PARDPTEPISIFPFRSLRVLELRGCDLSTAKG 126 (1096)
T ss_pred ccCCCCCceeEEecCCcccchHHHHHHHHHHH--Hhhheeeeeccc--CCCCCCCCceeccccceeeEEecCcchhhhhh
Confidence 34578888887665432211111122222222 234555554431 22222228889999999999999997754111
Q ss_pred CCC---------------------------------CCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616 179 CAN---------------------------------LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR 225 (531)
Q Consensus 179 ~~~---------------------------------l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~ 225 (531)
+.. ...|.+-+++.|.+. .+...+.-.|.||.|+|++|.....-.
T Consensus 127 L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~~ 204 (1096)
T KOG1859|consen 127 LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVDN 204 (1096)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhHH
Confidence 100 123444444444441 122234446888999999988766556
Q ss_pred ccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616 226 ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304 (531)
Q Consensus 226 ~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L 304 (531)
+..|++|+.|||++|. ..++.+....-.|+.|.+.+|.......+.++.+|+.||+++|-+.+..-...+..+..|..|
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 6678899999999886 344444332234888888888743344677888899999988887764434445566778888
Q ss_pred Eecccc
Q 009616 305 SIISLE 310 (531)
Q Consensus 305 ~L~~c~ 310 (531)
.|.+++
T Consensus 285 ~LeGNP 290 (1096)
T KOG1859|consen 285 WLEGNP 290 (1096)
T ss_pred hhcCCc
Confidence 888764
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.88 E-value=1.1e-06 Score=85.09 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=47.3
Q ss_pred eCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616 250 AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (531)
Q Consensus 250 ~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~ 311 (531)
.+|+|+.|++++|. ...+.+|.+...++.|+|..|.+. ..-..++.++..|+.|+|.++..
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCee
Confidence 46889999999998 445667888889999999888876 23345677888899999988653
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.88 E-value=6.9e-06 Score=84.47 Aligned_cols=144 Identities=22% Similarity=0.244 Sum_probs=59.0
Q ss_pred CCccEEEecCCcCCC-CcCCCCCC-ccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeecc-ccccccEEEE
Q 009616 161 KLLTSLKLFGCKLEQ-PSHCANLQ-SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS-EAHKLKSLIL 237 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~-~~~~~~l~-~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~-~l~~L~~L~l 237 (531)
+.++.|++.++.+.. ++....++ +|+.|++++|.+.. ++.-+..+++|+.|++++|......... ..+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 445555555554444 33333332 55555555554421 2122444555555555554432221111 2345555555
Q ss_pred Eeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecc
Q 009616 238 RFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIIS 308 (531)
Q Consensus 238 ~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~ 308 (531)
++|. ..++........|++|.+++|. ...+..+..+.++..+.+.++.+.. +...++++++++.|++++
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSN 264 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccc
Confidence 5543 1121111122225555555542 3333334444444444444444332 122333444455554444
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.82 E-value=6.3e-06 Score=77.24 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=51.6
Q ss_pred HhCCcccceEEeeecCC--cceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc-----ccceeeccCCCCc
Q 009616 204 VRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-----VPRLLDVAECPHL 276 (531)
Q Consensus 204 l~~~~~Le~L~L~~c~~--~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~L 276 (531)
++.+.+|..+.++.|.. +..+.... |.|..+.+.+......... .|.=...+..+.. ++....+.....|
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~~~~~~k-ptl~t~~v~~s~~~~~~~l--~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIVDIELLK-PTLQTICVHNTTIQDVPSL--LPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred hHHhhhhheeeeeccchhheeceeecC-chhheeeeecccccccccc--cchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 34566667777776653 22333333 6677776665431111111 1111111222111 3334445556677
Q ss_pred cEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 277 RKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 277 ~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
+.++|++|.++. +.+...-.|.++.|+++.+.
T Consensus 287 telDLS~N~I~~--iDESvKL~Pkir~L~lS~N~ 318 (490)
T KOG1259|consen 287 TELDLSGNLITQ--IDESVKLAPKLRRLILSQNR 318 (490)
T ss_pred hhccccccchhh--hhhhhhhccceeEEeccccc
Confidence 777777777763 23334456777777777754
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.71 E-value=3.3e-05 Score=56.17 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=43.2
Q ss_pred CcccEEEecccc-ccc-eeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 252 PSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 252 ~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
|+|++|++++|. ... +..|.++++|++|++++|.++ ...+..+.++++|+.|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 567777777776 323 346788888888888888887 4455677888888888888764
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.70 E-value=1.5e-05 Score=57.98 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=36.2
Q ss_pred CCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecC
Q 009616 161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF 219 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~ 219 (531)
++|++|++++|++.. +..+.++++|++|++++|.+.. .-+..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCc
Confidence 356777777776665 3455667777777777776632 122345667777777776664
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.70 E-value=1.4e-05 Score=84.31 Aligned_cols=128 Identities=25% Similarity=0.264 Sum_probs=82.0
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCC-cCCC------CcCCCCCCccCEEEeeeEE-echHhHHHHHh
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGC-KLEQ------PSHCANLQSLKKLSLDEVY-VNDQMVQSLVR 205 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~-~~~~~l~~~l~ 205 (531)
++++++.+..... .....+-.....++.|+.|++++| .... ......+++|+.|+++++. +++..+..+..
T Consensus 188 ~~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 188 PLLKRLSLSGCSK-ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred chhhHhhhccccc-CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4677776654211 111112234456888999999873 2221 2334557889999999888 57777888777
Q ss_pred CCcccceEEeeecCCcceeec----cccccccEEEEEeec----cccceeeeeCCcccEEEeccc
Q 009616 206 ECRVLEDLSFFYCFGLKRLRI----SEAHKLKSLILRFTY----QELESVEIAVPSLQQLELSFS 262 (531)
Q Consensus 206 ~~~~Le~L~L~~c~~~~~l~~----~~l~~L~~L~l~~~~----~~l~~~~~~~~~L~~L~l~~~ 262 (531)
.|++|++|.+.+|..+....+ .+|++|++|++++|. ..+..+..++++|+.|.+...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 899999999888886544222 257889999999887 123333445777666654433
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.68 E-value=1.7e-05 Score=81.51 Aligned_cols=168 Identities=23% Similarity=0.199 Sum_probs=122.0
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCC-CccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAK-LLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le 211 (531)
..+..+++.. .....+|......+ +|+.|++++|.+.. +.....+++|+.|+++.|.+.+ ++...+..+.|+
T Consensus 116 ~~l~~L~l~~----n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDN----NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLN 189 (394)
T ss_pred cceeEEecCC----cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhh
Confidence 3566776654 45677887777774 89999999998887 5678889999999999998743 455455789999
Q ss_pred eEEeeecCCcceeec-cccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCCh
Q 009616 212 DLSFFYCFGLKRLRI-SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND 288 (531)
Q Consensus 212 ~L~L~~c~~~~~l~~-~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~ 288 (531)
.|++++|....--.. .....|++|.+++|. ........+..++..+.+.++. ...+..++.+++++.|+++++.++.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 999988865332221 233459999999884 2333334467777888877777 3336678888899999999998885
Q ss_pred hhhhhhhcCCCCCcEEEecccc
Q 009616 289 QEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 289 ~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
- .. +....+|+.|++++..
T Consensus 270 i--~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 270 I--SS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred c--cc-ccccCccCEEeccCcc
Confidence 3 22 6778899999998854
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.65 E-value=8.8e-06 Score=90.45 Aligned_cols=198 Identities=23% Similarity=0.235 Sum_probs=103.6
Q ss_pred ccCCcccc-CCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee-c
Q 009616 151 NALPQTIF-SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-I 226 (531)
Q Consensus 151 ~~lp~~l~-~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~-~ 226 (531)
..++..++ .++.|++|||++|.-.+ |..++.+-+||+|+|++..+. .+|.-+.++..|.+|++..+..+..++ +
T Consensus 560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccch
Confidence 34444433 47888888888874333 777888888888888887764 366667788888888888776654432 2
Q ss_pred c-ccccccEEEEEeec-cccceee---eeCCcccEEEeccccccceeeccCCCCcc----EEEEeCCCCChhhhhhhhcC
Q 009616 227 S-EAHKLKSLILRFTY-QELESVE---IAVPSLQQLELSFSRVPRLLDVAECPHLR----KLVLFLPHFNDQEFHPLISK 297 (531)
Q Consensus 227 ~-~l~~L~~L~l~~~~-~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~L~----~L~L~~~~~~~~~~~~~l~~ 297 (531)
. .+++|++|.+.... ..-.... .++.+|+.|............+..++.|. .+.+.++. .......+..
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~ 715 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGS 715 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc--cceeeccccc
Confidence 2 36788888876543 0111111 13334444443322211111222222222 22221111 1122233455
Q ss_pred CCCCcEEEeccccchhHHHhc---------Ccccceeccccccchhhhc--ccCCCcceeEeecCC
Q 009616 298 FPLLEDLSIISLETLERIMIS---------SNRLMHLEVYNCSGLNRIN--VDAPNLVSFDFEDNP 352 (531)
Q Consensus 298 ~~~L~~L~L~~c~~l~~l~~~---------~~~L~~L~l~~c~~L~~l~--~~~~nL~sl~~~~~~ 352 (531)
+.+|+.|.+.+|...+..... ++++..+.+.+|..++.+. .-+|+|+++.+.+..
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 667777777776543221111 2344444455555554433 456677766665443
No 47
>PLN03150 hypothetical protein; Provisional
Probab=97.58 E-value=7.1e-05 Score=81.22 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=79.4
Q ss_pred CccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEE
Q 009616 162 LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLIL 237 (531)
Q Consensus 162 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l 237 (531)
.++.|+|++|.+.+ |..++.+++|+.|+|++|.+.+ .++..++.+++|+.|+|++|...+.++ +.++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 37899999999987 7788899999999999998855 366668999999999999998766543 557899999999
Q ss_pred Eeec--cccceeee-eCCcccEEEecccc
Q 009616 238 RFTY--QELESVEI-AVPSLQQLELSFSR 263 (531)
Q Consensus 238 ~~~~--~~l~~~~~-~~~~L~~L~l~~~~ 263 (531)
++|. +.++.... ...++..+++.+|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 9987 33333222 23466788888886
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.43 E-value=4.4e-06 Score=84.72 Aligned_cols=131 Identities=20% Similarity=0.179 Sum_probs=58.3
Q ss_pred CCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce-eeccccc
Q 009616 153 LPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRISEAH 230 (531)
Q Consensus 153 lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~-l~~~~l~ 230 (531)
+|..+.++..|++|+|+.|++.. |..+..|| |+.|-+++|+++. ++.-++..+.|.+|+.+.|....- -.+.++.
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~--lp~~ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS--LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc--CCcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 44444455555555555554444 33333332 4555555554421 222233444455555544433221 1122344
Q ss_pred cccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCC
Q 009616 231 KLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFN 287 (531)
Q Consensus 231 ~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~ 287 (531)
+|+.|.+..|. ..++.-.. .-.|..|+++.|. ..+|+.|..++.|++|.|.+|.++
T Consensus 190 slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 45555554443 22221111 2235555555555 445555555555555555555554
No 49
>PLN03150 hypothetical protein; Provisional
Probab=97.42 E-value=0.00016 Score=78.52 Aligned_cols=80 Identities=16% Similarity=0.042 Sum_probs=59.0
Q ss_pred cccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEe
Q 009616 231 KLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI 306 (531)
Q Consensus 231 ~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L 306 (531)
.++.|++++|. +.++.....+++|+.|++++|. +..|..++.+++|+.|+|++|.+++. ++..++++++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence 36777777776 3344444467888888888887 56777788888888888888888854 4555778888888888
Q ss_pred ccccc
Q 009616 307 ISLET 311 (531)
Q Consensus 307 ~~c~~ 311 (531)
++|..
T Consensus 498 s~N~l 502 (623)
T PLN03150 498 NGNSL 502 (623)
T ss_pred cCCcc
Confidence 88754
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.00016 Score=68.11 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=39.5
Q ss_pred cccCCCCccEEEecCCcCCC----CcCCCCCCccCEEEeeeEEec-hHhHHHHHhCCcccceEEeeecCC
Q 009616 156 TIFSAKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVN-DQMVQSLVRECRVLEDLSFFYCFG 220 (531)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~-~~~l~~~l~~~~~Le~L~L~~c~~ 220 (531)
.++..+-++.|.+.+|.+.. ......++.++.|+|.+|.++ -..+..++.++|.|+.|+|+.|+.
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence 34444455666677776643 111234667777777777773 345666667777777777766654
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=0.00017 Score=78.29 Aligned_cols=125 Identities=18% Similarity=0.092 Sum_probs=61.1
Q ss_pred CccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCccee--e-ccccccccEEEEEeeccccceee--eeCCcccE
Q 009616 183 QSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRL--R-ISEAHKLKSLILRFTYQELESVE--IAVPSLQQ 256 (531)
Q Consensus 183 ~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~-~~~l~~L~~L~l~~~~~~l~~~~--~~~~~L~~ 256 (531)
.+|++|++++... ....+..+-..+|+|+.|.+.+-.....- . ..++|+|..|||+++. +..+. .++.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn--I~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN--ISNLSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC--ccCcHHHhccccHHH
Confidence 4667777766554 33334444445677777776654332220 1 1245666666666664 22211 24556666
Q ss_pred EEecccc---ccceeeccCCCCccEEEEeCCCCChhh--hh---hhhcCCCCCcEEEeccc
Q 009616 257 LELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQE--FH---PLISKFPLLEDLSIISL 309 (531)
Q Consensus 257 L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~---~~l~~~~~L~~L~L~~c 309 (531)
|.+.+-. ......+-++++|+.||++........ +. +....+|+|+.|+.++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 6555443 112223445666666666544433211 11 11224566666666653
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.22 E-value=2.2e-05 Score=79.76 Aligned_cols=157 Identities=18% Similarity=0.080 Sum_probs=99.2
Q ss_pred ccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCc-ceeec
Q 009616 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGL-KRLRI 226 (531)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~-~~l~~ 226 (531)
....+|..+..|..|+.|.|..|.+.. |..+.++..|++|+|+.|++.. ++.-+..|| |+.|.+++|... ....+
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~~lp~~i 162 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLTSLPEEI 162 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccccCCccc
Confidence 345666666666777777777776655 6667777777777777776632 232234444 677777666542 22334
Q ss_pred cccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616 227 SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304 (531)
Q Consensus 227 ~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L 304 (531)
+..++|..|+++.|. ..++.-...+.+|+.|.+..|. ...|..+. .=.|..||+++|+++. ++--+.++..|++|
T Consensus 163 g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVL 239 (722)
T ss_pred ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee--cchhhhhhhhheee
Confidence 456777777777776 4444444566677777777776 55555555 3347777777777763 34445677777777
Q ss_pred Eeccccc
Q 009616 305 SIISLET 311 (531)
Q Consensus 305 ~L~~c~~ 311 (531)
.|.+++.
T Consensus 240 ~LenNPL 246 (722)
T KOG0532|consen 240 QLENNPL 246 (722)
T ss_pred eeccCCC
Confidence 7777653
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0002 Score=67.35 Aligned_cols=179 Identities=17% Similarity=0.088 Sum_probs=117.1
Q ss_pred cCCcEEEEeeecCCCccc-cCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVN-ALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.+|++++|.. +....+ ++-+-+-+++.|+.|+|+.|.+.. ........+|++|.|.+..++-......+...|.+
T Consensus 71 ~~v~elDL~~--N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTG--NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhccc--chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3799999875 221111 222334467999999999998875 11114567999999998877655677788899999
Q ss_pred ceEEeeecCC----cceeeccc-cccccEEEEEeec----cccceeeeeCCcccEEEecccc---ccceeeccCCCCccE
Q 009616 211 EDLSFFYCFG----LKRLRISE-AHKLKSLILRFTY----QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLRK 278 (531)
Q Consensus 211 e~L~L~~c~~----~~~l~~~~-l~~L~~L~l~~~~----~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~ 278 (531)
++|.++.|.. +..-.+.. -+.++.|....|. .....+..-.|++.++-++.|. ......+..+|.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999998843 11111211 1567777777765 1122233346888888888885 222234556777778
Q ss_pred EEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhH
Q 009616 279 LVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER 314 (531)
Q Consensus 279 L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~ 314 (531)
|.|+.+++..=.-...+.+++.|..|.+...+....
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 888888876533334467889999998888665443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.04 E-value=0.00044 Score=46.30 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEe
Q 009616 161 KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV 195 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~ 195 (531)
++|++|++++|.+.. ++.+++|++|++|++++|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 356777777777766 44466677777777776665
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.0001 Score=68.36 Aligned_cols=57 Identities=30% Similarity=0.213 Sum_probs=29.4
Q ss_pred CcccceEEeeecCCcceeeccccccccEEEEEeec----cccceeeeeCCcccEEEecccc
Q 009616 207 CRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY----QELESVEIAVPSLQQLELSFSR 263 (531)
Q Consensus 207 ~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~----~~l~~~~~~~~~L~~L~l~~~~ 263 (531)
+..|+.|.+.++..........+|+|+.|.++.|+ +++..+...+|+|+++.+++|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 33444444444433333333345666666666663 3444444455666666666665
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.00057 Score=72.05 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=39.9
Q ss_pred eCCcccEEEecccccc----ceeeccCCCCccEEEEeCCC-CChhhhhhhhcCCCCCcEEEeccccch
Q 009616 250 AVPSLQQLELSFSRVP----RLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLEDLSIISLETL 312 (531)
Q Consensus 250 ~~~~L~~L~l~~~~~~----~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~L~~L~L~~c~~l 312 (531)
.+++|+.|+++.+... .......|++|+.|.+.++. +++..+..+...|++|+.|+|++|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3455556655555411 11111237777777766555 677778888888888888888888664
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.81 E-value=0.0018 Score=60.44 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=50.3
Q ss_pred hhHHHHHHHH-HHcCCcEEEEeeecCCCc---cccCCccccCCCCccEEEecCCcCC---C---------CcCCCCCCcc
Q 009616 122 PLFDKWVELA-MENGVKELDFEVITDKNS---VNALPQTIFSAKLLTSLKLFGCKLE---Q---------PSHCANLQSL 185 (531)
Q Consensus 122 ~~~~~wl~~~-~~~~l~~L~L~~~~~~~~---~~~lp~~l~~~~~L~~L~L~~~~l~---~---------~~~~~~l~~L 185 (531)
.++...+... ....+.+++|++ +... ...+...+.+-++|+..+++.--.. . .+.+.+||+|
T Consensus 17 eDvk~v~eel~~~d~~~evdLSG--NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l 94 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSG--NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRL 94 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccC--CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcc
Confidence 3444444433 234677777775 2110 0112223334466777666653111 1 1233557777
Q ss_pred CEEEeeeEEech---HhHHHHHhCCcccceEEeeecC
Q 009616 186 KKLSLDEVYVND---QMVQSLVRECRVLEDLSFFYCF 219 (531)
Q Consensus 186 ~~L~L~~~~~~~---~~l~~~l~~~~~Le~L~L~~c~ 219 (531)
+..+|+.|.|+. ..+..++++...|++|.+++|.
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 777777776632 3344556777777777776664
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.75 E-value=0.0008 Score=62.66 Aligned_cols=176 Identities=12% Similarity=0.070 Sum_probs=100.1
Q ss_pred CchhHHHHHHHHHH--cCCcEEEEeeecCCCccccCCc-------cccCCCCccEEEecCCcCCC--CcC----CCCCCc
Q 009616 120 SSPLFDKWVELAME--NGVKELDFEVITDKNSVNALPQ-------TIFSAKLLTSLKLFGCKLEQ--PSH----CANLQS 184 (531)
Q Consensus 120 ~~~~~~~wl~~~~~--~~l~~L~L~~~~~~~~~~~lp~-------~l~~~~~L~~L~L~~~~l~~--~~~----~~~l~~ 184 (531)
.+.....|++..++ ++++..+++..........+|. .+..|+.|+..+||.|.|.. |+. ++.-+.
T Consensus 42 igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~ 121 (388)
T COG5238 42 IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTD 121 (388)
T ss_pred ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCC
Confidence 36777889887665 3566655544222222333443 34689999999999998876 333 356789
Q ss_pred cCEEEeeeEEec---hHhHHHH---------HhCCcccceEEeeecCCccee------eccccccccEEEEEeeccccce
Q 009616 185 LKKLSLDEVYVN---DQMVQSL---------VRECRVLEDLSFFYCFGLKRL------RISEAHKLKSLILRFTYQELES 246 (531)
Q Consensus 185 L~~L~L~~~~~~---~~~l~~~---------l~~~~~Le~L~L~~c~~~~~l------~~~~l~~L~~L~l~~~~~~l~~ 246 (531)
|++|.|++|.+. +.-+... ..+-|.|+......|+....- -+.+-.+|+.+.+..|. +.+
T Consensus 122 l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg--Irp 199 (388)
T COG5238 122 LVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG--IRP 199 (388)
T ss_pred ceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC--cCc
Confidence 999999999762 2223211 234566666666665442210 01111345555555553 110
Q ss_pred eeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChh---hhhhhhcCCCCCcEEEecccc
Q 009616 247 VEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQ---EFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~~~~L~~L~L~~c~ 310 (531)
-.+ +.| ....+..+.+|+.|+|..|.+|.. .+...+...+.|+.|.+.+|-
T Consensus 200 egv-----~~L--------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 200 EGV-----TML--------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred chh-----HHH--------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 000 000 011234567788888887777642 334455667778888888873
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.65 E-value=0.00017 Score=74.55 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=70.8
Q ss_pred cccCCCCccEEEecCCcCCCCcC-CCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccE
Q 009616 156 TIFSAKLLTSLKLFGCKLEQPSH-CANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKS 234 (531)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~ 234 (531)
.+..+++|+.|++.+|.+..... ...+++|++|++++|.++. +.. +..++.|+.|++.+|.....-....++.|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LEG-LSTLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheecccccccc--ccc-hhhccchhhheeccCcchhccCCccchhhhc
Confidence 35567888888888888877444 6778888888888888732 121 4556668888888887654444444678888
Q ss_pred EEEEeec-ccccee-eeeCCcccEEEecccc
Q 009616 235 LILRFTY-QELESV-EIAVPSLQQLELSFSR 263 (531)
Q Consensus 235 L~l~~~~-~~l~~~-~~~~~~L~~L~l~~~~ 263 (531)
+++++|. ..+... ...+++|+.+.+.+|.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 8888876 222221 2456777777777776
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.63 E-value=0.005 Score=62.05 Aligned_cols=11 Identities=27% Similarity=0.114 Sum_probs=5.7
Q ss_pred CccEEEEeCCC
Q 009616 275 HLRKLVLFLPH 285 (531)
Q Consensus 275 ~L~~L~L~~~~ 285 (531)
+|+.|++.++.
T Consensus 157 SLk~L~Is~c~ 167 (426)
T PRK15386 157 SLKTLSLTGCS 167 (426)
T ss_pred cccEEEecCCC
Confidence 45555555444
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.62 E-value=0.0019 Score=57.62 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=37.9
Q ss_pred eCCcccEEEecccc---ccceeeccCCCCccEEEEeCCCCChhh--hhhhhcCCCCCcEEEecccc
Q 009616 250 AVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQE--FHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 250 ~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~~~~L~~L~L~~c~ 310 (531)
.+|+|..|.|.+|. ......+..||.|++|.+-+|.++... -..++..+|+|+.|+.....
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 35666666666665 122234567777888877777766421 12356677888888887653
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.00029 Score=65.32 Aligned_cols=106 Identities=25% Similarity=0.178 Sum_probs=69.5
Q ss_pred cCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCc--cee-ecccccccc
Q 009616 158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGL--KRL-RISEAHKLK 233 (531)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~--~~l-~~~~l~~L~ 233 (531)
-....|+.|++.++.++....+-.+|+||+|.++.|.+ ....+..++..||+|++|++++|..- ..+ +...+.+|.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34577888888888877655566788999999999844 22345666678899999999998652 222 233467788
Q ss_pred EEEEEeec-cccc----eeeeeCCcccEEEecccc
Q 009616 234 SLILRFTY-QELE----SVEIAVPSLQQLELSFSR 263 (531)
Q Consensus 234 ~L~l~~~~-~~l~----~~~~~~~~L~~L~l~~~~ 263 (531)
.|++.+|. ..+. .+..-+|+|++|+-....
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 88888876 1111 122235666666544443
No 63
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.59 E-value=4.4e-05 Score=79.76 Aligned_cols=119 Identities=21% Similarity=0.166 Sum_probs=57.9
Q ss_pred ccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCC--cceeeccccccccEEEEEe
Q 009616 163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRF 239 (531)
Q Consensus 163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~--~~~l~~~~l~~L~~L~l~~ 239 (531)
|.+-+.++|.+.. -..+.-++.|+.|+|++|++... . .+..|+.|++|+|++|.. +..+...+|. |..|.+++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 3444444444433 22333456666666666666332 1 245566666666666644 2223333433 66666666
Q ss_pred ec-cccceeeeeCCcccEEEecccc---ccceeeccCCCCccEEEEeCCCC
Q 009616 240 TY-QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 240 ~~-~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~ 286 (531)
|. ..+..+ -++.+|+.|++++|- ......++.+..|+.|.|.+|.+
T Consensus 242 N~l~tL~gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTLRGI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhhhhH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 64 111111 145556666666554 11222344455555555555543
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.55 E-value=0.00031 Score=72.65 Aligned_cols=125 Identities=23% Similarity=0.256 Sum_probs=69.3
Q ss_pred CCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEE
Q 009616 160 AKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR 238 (531)
Q Consensus 160 ~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~ 238 (531)
+..++.+.+..+.+.. ......+.+|+.|++..|.+.. +...+.++++|++|++++|.......+..++.|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccccchhhccchhhheec
Confidence 3445555555554443 2335566777777777766622 222245667777777777665444445555667777777
Q ss_pred eec-cccceeeeeCCcccEEEeccccccceee--ccCCCCccEEEEeCCCCC
Q 009616 239 FTY-QELESVEIAVPSLQQLELSFSRVPRLLD--VAECPHLRKLVLFLPHFN 287 (531)
Q Consensus 239 ~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~ 287 (531)
+|. ..+.... .+++|+.+++++|....-.. ...+.+++.+.+.+|.+.
T Consensus 149 ~N~i~~~~~~~-~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 149 GNLISDISGLE-SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cCcchhccCCc-cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 765 1111111 25667777777766111111 356666777777666654
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.54 E-value=0.0029 Score=42.34 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=15.2
Q ss_pred cccEEEecccc-ccceeeccCCCCccEEEEeCCCCC
Q 009616 253 SLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFN 287 (531)
Q Consensus 253 ~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~ 287 (531)
+|++|++++|. ...+..++++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 34444444444 223323444444444444444444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00021 Score=66.58 Aligned_cols=75 Identities=27% Similarity=0.223 Sum_probs=35.9
Q ss_pred CCcccceEEeeecCCcceeeccccccccEEEEEeec-cccceee--eeCCcccEEEecccc--ccce-----eeccCCCC
Q 009616 206 ECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVE--IAVPSLQQLELSFSR--VPRL-----LDVAECPH 275 (531)
Q Consensus 206 ~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~--~~~~~L~~L~l~~~~--~~~~-----~~~~~~~~ 275 (531)
.+|.||.|.|+-|....--++..|.+|++|.+..|. ..+.++. .++|+|+.|+|..|. +..+ ..+.-+|+
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 344444444444333222223334444444444443 2222222 267778888877766 2221 12445777
Q ss_pred ccEEE
Q 009616 276 LRKLV 280 (531)
Q Consensus 276 L~~L~ 280 (531)
|++|+
T Consensus 119 LkKLD 123 (388)
T KOG2123|consen 119 LKKLD 123 (388)
T ss_pred chhcc
Confidence 77775
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.08 E-value=0.011 Score=52.98 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=30.4
Q ss_pred CccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCC
Q 009616 162 LLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG 220 (531)
Q Consensus 162 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~ 220 (531)
+...++|++|.+.....+..++.|.+|.|.+|+++.- -+.+-.-+|+|..|.|.+|+.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceee-ccchhhhccccceEEecCcch
Confidence 4455666666554333444566677777776666321 011222345666666665543
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.95 E-value=0.017 Score=58.25 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=52.3
Q ss_pred CCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecc
Q 009616 182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSF 261 (531)
Q Consensus 182 l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~ 261 (531)
++++++|++++|.+.. ++. --++|++|.+.+|..+..++-.-.++|+.|++++|. .+..+ .++|+.|.+.+
T Consensus 51 ~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs-~L~sL---P~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP-EISGL---PESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc-ccccc---ccccceEEeCC
Confidence 5666666666664421 221 112466666666666544331111466666666663 22211 23456666554
Q ss_pred ccccceeeccCCC-CccEEEEeCCC-CChhhhhhhhcCC-CCCcEEEeccccch
Q 009616 262 SRVPRLLDVAECP-HLRKLVLFLPH-FNDQEFHPLISKF-PLLEDLSIISLETL 312 (531)
Q Consensus 262 ~~~~~~~~~~~~~-~L~~L~L~~~~-~~~~~~~~~l~~~-~~L~~L~L~~c~~l 312 (531)
+... .++.+| +|+.|.+.+++ ......+. .+ ++|+.|.+++|..+
T Consensus 122 n~~~---~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 122 SATD---SIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI 169 (426)
T ss_pred CCCc---ccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc
Confidence 3311 123332 45555553222 11000111 12 35666777666543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.0013 Score=61.40 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=50.5
Q ss_pred ccccEEEEEeeccccceee--eeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616 230 HKLKSLILRFTYQELESVE--IAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (531)
Q Consensus 230 ~~L~~L~l~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (531)
.+.+.|+.++|. +..+. ..+|.|+.|.|+-|.......+..|++|++|+|..|.|.+-.-...+.++|+|+.|-|.
T Consensus 19 ~~vkKLNcwg~~--L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCG--LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCC--ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 344555555552 33332 25677777777777644455677788888888887777653334456788888888777
Q ss_pred ccc
Q 009616 308 SLE 310 (531)
Q Consensus 308 ~c~ 310 (531)
.++
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 653
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.61 E-value=0.018 Score=55.12 Aligned_cols=37 Identities=24% Similarity=0.605 Sum_probs=35.0
Q ss_pred CccCCCCC----hHHHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616 7 ADHISDLP----TFIIHHIMSFLSPKDVVRTGILSTTWRKF 43 (531)
Q Consensus 7 ~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vSkrWr~l 43 (531)
.|.|+.|| |+|-..|||+|+..+++.+-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 58899999 99999999999999999999999999974
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.008 Score=53.83 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=62.2
Q ss_pred ccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCcceee--
Q 009616 151 NALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLR-- 225 (531)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~-- 225 (531)
+.+|..-..-..++.++-+++.+.. ...+.++++++.|.+.+|.. ++..+..+-.-.|+||.|+|++|+.+++-.
T Consensus 91 ~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 91 FSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred ecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH
Confidence 3555443333457777777776543 45567788888999988876 777777776778999999999998876532
Q ss_pred -ccccccccEEEEEe
Q 009616 226 -ISEAHKLKSLILRF 239 (531)
Q Consensus 226 -~~~l~~L~~L~l~~ 239 (531)
+..+++|+.|.+..
T Consensus 171 ~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHhhhhHHHHhcC
Confidence 33457777777663
No 72
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=93.74 E-value=0.097 Score=30.45 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=21.7
Q ss_pred ccCEEEeeeEEe-chHhHHHHHhCCc
Q 009616 184 SLKKLSLDEVYV-NDQMVQSLVRECR 208 (531)
Q Consensus 184 ~L~~L~L~~~~~-~~~~l~~~l~~~~ 208 (531)
+||+|+|..+.+ ++..+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 5557999999997
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.56 E-value=0.079 Score=44.56 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=13.5
Q ss_pred eccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616 269 DVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (531)
Q Consensus 269 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (531)
.|..+++|+.+.+..+ ++ ......+.++ +|+.+.+.
T Consensus 76 ~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred cccccccccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 3445566666665332 22 1222334444 55555544
No 74
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.92 E-value=0.078 Score=52.96 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=33.4
Q ss_pred cCCCCChHHHHHHhcCCC-hHHHHHHhhhhhhhhhhhcc
Q 009616 9 HISDLPTFIIHHIMSFLS-PKDVVRTGILSTTWRKFQTS 46 (531)
Q Consensus 9 ~is~LPd~iL~~Ils~L~-~~d~~r~s~vSkrWr~lw~~ 46 (531)
..++||+|+|..|..+|+ .-|++|.+.|||.||..-..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 367999999999999997 67999999999999986443
No 75
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.37 E-value=0.069 Score=51.00 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=30.7
Q ss_pred ccCCCCChHHHHHHhcC-----CChHHHHHHhhhhhhhhhh
Q 009616 8 DHISDLPTFIIHHIMSF-----LSPKDVVRTGILSTTWRKF 43 (531)
Q Consensus 8 D~is~LPd~iL~~Ils~-----L~~~d~~r~s~vSkrWr~l 43 (531)
+.|+.||||||..||.. |+.+++.++|+|||.|+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 34689999999999864 5679999999999999853
No 76
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=91.48 E-value=0.065 Score=37.06 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=29.9
Q ss_pred CCccccccccCCCcccccc----------cccccCCCCeEEEee
Q 009616 490 CQIKCWRHYLKGINTESFD----------PLQESSEGDLWLRLD 523 (531)
Q Consensus 490 ~~~~c~~~~Lk~v~i~~~~----------~~~e~~~~~~~~~~~ 523 (531)
...+|..++||.|++.||. .|.+||..++-+++.
T Consensus 7 ~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 7 SVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 4579999999999999999 888999999888764
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.33 E-value=0.17 Score=42.47 Aligned_cols=56 Identities=18% Similarity=0.381 Sum_probs=22.8
Q ss_pred cCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEee
Q 009616 158 FSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFF 216 (531)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~ 216 (531)
..|++|+.+.+... +.. ...+.++++|+.+.+..+ +.. .-...+.+|+.|+.+.+.
T Consensus 9 ~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 9 YNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEET
T ss_pred hCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccc-cceeeeeccccccccccc
Confidence 35567777776642 222 334555666666666543 210 001124556566666663
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.53 E-value=0.025 Score=47.55 Aligned_cols=78 Identities=21% Similarity=0.180 Sum_probs=51.4
Q ss_pred ccccEEEEEeec--cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEe
Q 009616 230 HKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI 306 (531)
Q Consensus 230 ~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L 306 (531)
..|+..++++|. ...+.+....|.++.|++++|. ...|..+..++.|+.|+++.|.+... ++.+..+.+|-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~--p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE--PRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc--hHHHHHHHhHHHhcC
Confidence 556666677665 2233445566778888888888 66777788888888888888887642 333333555666655
Q ss_pred ccc
Q 009616 307 ISL 309 (531)
Q Consensus 307 ~~c 309 (531)
.++
T Consensus 131 ~~n 133 (177)
T KOG4579|consen 131 PEN 133 (177)
T ss_pred CCC
Confidence 543
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.24 E-value=0.037 Score=46.55 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=41.2
Q ss_pred CCCCccEEEecCCcCCC-CcCC-CCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce
Q 009616 159 SAKLLTSLKLFGCKLEQ-PSHC-ANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR 223 (531)
Q Consensus 159 ~~~~L~~L~L~~~~l~~-~~~~-~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~ 223 (531)
....|+..+|++|.|.. |+.+ ..+|.++.|+|++|.+.+ ++.-++.+|.|+.|+++.|+....
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccc
Confidence 34556666777777765 4333 456677888888777643 444477778888888777766443
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.05 E-value=0.15 Score=45.91 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=36.8
Q ss_pred ccCCCCccEEEEeCCCCCh-hhhhhhhcCCCCCcEEEeccccchhHHHhc----Ccccceecccccc
Q 009616 270 VAECPHLRKLVLFLPHFND-QEFHPLISKFPLLEDLSIISLETLERIMIS----SNRLMHLEVYNCS 331 (531)
Q Consensus 270 ~~~~~~L~~L~L~~~~~~~-~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~----~~~L~~L~l~~c~ 331 (531)
+.++++++.|.+.++.--+ ..+..+-.-.++|+.|+|++|..|+.-... +++|+.|.+.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4456666666665554333 333444445678888888888776654443 3566666666544
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.53 E-value=0.26 Score=27.30 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=8.4
Q ss_pred CccEEEecCCcCCC
Q 009616 162 LLTSLKLFGCKLEQ 175 (531)
Q Consensus 162 ~L~~L~L~~~~l~~ 175 (531)
+|++|+|++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 35666666665554
No 82
>PF13013 F-box-like_2: F-box-like domain
Probab=83.15 E-value=1.1 Score=36.43 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.9
Q ss_pred cCCCCChHHHHHHhcCCChHHHHHHhhhhh
Q 009616 9 HISDLPTFIIHHIMSFLSPKDVVRTGILST 38 (531)
Q Consensus 9 ~is~LPd~iL~~Ils~L~~~d~~r~s~vSk 38 (531)
.+.+||+||+..|+.+-...+.......++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 378899999999999999999988887776
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.64 E-value=0.68 Score=49.23 Aligned_cols=39 Identities=31% Similarity=0.558 Sum_probs=36.3
Q ss_pred CCCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616 5 VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF 43 (531)
Q Consensus 5 ~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~l 43 (531)
...|.|+.||-|+..+||++|+.+++++++++|+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 356899999999999999999999999999999999865
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.55 E-value=0.91 Score=25.57 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=11.8
Q ss_pred CCccCEEEeeeEEechHhHHH
Q 009616 182 LQSLKKLSLDEVYVNDQMVQS 202 (531)
Q Consensus 182 l~~L~~L~L~~~~~~~~~l~~ 202 (531)
+++|++|+|++|.+++..+..
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 356777777777776555544
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=82.29 E-value=1.2 Score=22.90 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=6.4
Q ss_pred CccEEEecCCcCC
Q 009616 162 LLTSLKLFGCKLE 174 (531)
Q Consensus 162 ~L~~L~L~~~~l~ 174 (531)
+|+.|+|++|++.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666666666654
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=76.40 E-value=1.8 Score=24.91 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=11.5
Q ss_pred CCCCcEEEeccccchhH
Q 009616 298 FPLLEDLSIISLETLER 314 (531)
Q Consensus 298 ~~~L~~L~L~~c~~l~~ 314 (531)
|++|+.|+|++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777777777766554
No 87
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=74.68 E-value=1 Score=33.57 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=29.1
Q ss_pred cccccccCCCcccccc----------cccccCCCCeEEEeecc
Q 009616 493 KCWRHYLKGINTESFD----------PLQESSEGDLWLRLDWC 525 (531)
Q Consensus 493 ~c~~~~Lk~v~i~~~~----------~~~e~~~~~~~~~~~~~ 525 (531)
+|+..+||.|+|.+|. +|.+||.-++.+++...
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~ 43 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVE 43 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEee
Confidence 4788899999999998 88999999999998753
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=70.02 E-value=0.095 Score=54.77 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=33.4
Q ss_pred ccCCCCccEEEecCCcCCC------CcCCCCC-CccCEEEeeeEEech---HhHHHHHhCCcccceEEeeecCC
Q 009616 157 IFSAKLLTSLKLFGCKLEQ------PSHCANL-QSLKKLSLDEVYVND---QMVQSLVRECRVLEDLSFFYCFG 220 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~------~~~~~~l-~~L~~L~L~~~~~~~---~~l~~~l~~~~~Le~L~L~~c~~ 220 (531)
+....+|+.|++++|.+.+ -...... ..|++|.+..|.++. ..+...+..++.++.+++..|..
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 3345666777777766654 1111111 345556666665522 22334444566666666666654
No 89
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=66.37 E-value=10 Score=26.07 Aligned_cols=38 Identities=5% Similarity=-0.179 Sum_probs=31.5
Q ss_pred CCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEE
Q 009616 360 APCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLS 398 (531)
Q Consensus 360 ~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~ 398 (531)
.++|+.+.+.+ ..+.......+..++.|.+.|++++|.
T Consensus 13 ~s~Lk~v~~~~-f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKG-FRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEe-eeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 46899999986 555666778889999999999999875
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=60.63 E-value=0.16 Score=53.04 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=26.0
Q ss_pred ccEEEecCCcCCC------CcCCCCCCccCEEEeeeEEechHhHHHHHhCC----cccceEEeeecCC
Q 009616 163 LTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVNDQMVQSLVREC----RVLEDLSFFYCFG 220 (531)
Q Consensus 163 L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~----~~Le~L~L~~c~~ 220 (531)
+..|.|.+|.+.. -..+...+.|..|++++|.+.+.....+.... ..|+.|++..|..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l 156 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSL 156 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccc
Confidence 4555555554443 11223455555566665555433333332221 2344455555543
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.03 E-value=6.5 Score=23.11 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=13.0
Q ss_pred CccCEEEeeeEEechHhHHH
Q 009616 183 QSLKKLSLDEVYVNDQMVQS 202 (531)
Q Consensus 183 ~~L~~L~L~~~~~~~~~l~~ 202 (531)
++|++|+|++|.+.+.....
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 46777777777775554443
No 92
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=51.86 E-value=9.3 Score=30.32 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.5
Q ss_pred ccCCCCChHHHHHHhcCCChHHHHH
Q 009616 8 DHISDLPTFIIHHIMSFLSPKDVVR 32 (531)
Q Consensus 8 D~is~LPd~iL~~Ils~L~~~d~~r 32 (531)
..++.||-||-.+|+++|+.+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5688999999999999999999864
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.94 E-value=5.9 Score=41.35 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=20.4
Q ss_pred CCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeec
Q 009616 181 NLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYC 218 (531)
Q Consensus 181 ~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c 218 (531)
+.|.+..++|++|++ .-+.+..+....|.|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345555555555555 33344455555555555555555
No 94
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=48.69 E-value=31 Score=25.38 Aligned_cols=39 Identities=8% Similarity=-0.099 Sum_probs=31.9
Q ss_pred CCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEee
Q 009616 361 PCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLN 400 (531)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~ 400 (531)
++|+.+.+.+ ..+.......+..++.+.+.|+.+.+...
T Consensus 5 ~~Lk~v~i~~-f~g~~~e~~~~~~il~~a~~Lk~~~i~~~ 43 (72)
T smart00579 5 SSLEVLEIKG-YRGTEEEKELVKYFLENAPCLKKLTISVE 43 (72)
T ss_pred heEEEEEEEe-ccCcHHHHHHHHHHHhcchhheEEEEEee
Confidence 4688999986 56677778888999999999999988753
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=48.62 E-value=12 Score=21.23 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=7.9
Q ss_pred CCccEEEecCCcCCC
Q 009616 161 KLLTSLKLFGCKLEQ 175 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~ 175 (531)
++|++|+|++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555543
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=48.62 E-value=12 Score=21.23 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=7.9
Q ss_pred CCccEEEecCCcCCC
Q 009616 161 KLLTSLKLFGCKLEQ 175 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~ 175 (531)
++|++|+|++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555543
No 97
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=47.76 E-value=5.7 Score=37.39 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=39.4
Q ss_pred cCCCCChHHHHHHhcCCC-hHHHHHHhhhhhhh------hhhhccCCeeeeecCcc
Q 009616 9 HISDLPTFIIHHIMSFLS-PKDVVRTGILSTTW------RKFQTSFPVLDFDQNNF 57 (531)
Q Consensus 9 ~is~LPd~iL~~Ils~L~-~~d~~r~s~vSkrW------r~lw~~~~~L~f~~~~~ 57 (531)
-+.+||.+++..|+.+|+ -+|++.++.+-..- +.+|+.+...+|.+..+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 578999999999999998 69999998873333 35688888888877665
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.85 E-value=11 Score=39.36 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=14.4
Q ss_pred CccEEEEeCCCCCh------hhhhhhhcCCCCCcEEE
Q 009616 275 HLRKLVLFLPHFND------QEFHPLISKFPLLEDLS 305 (531)
Q Consensus 275 ~L~~L~L~~~~~~~------~~~~~~l~~~~~L~~L~ 305 (531)
.|++|.+.+|.+.. +.+..+-..||.|..|+
T Consensus 271 ~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 271 PLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred CHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 35555555555432 12223334556555554
No 99
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=31.18 E-value=13 Score=36.33 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=31.7
Q ss_pred CCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhh
Q 009616 10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ 44 (531)
Q Consensus 10 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw 44 (531)
+..+|+++++.|++|+.-++++++|.+|+|-..+-
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~ 42 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELG 42 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhh
Confidence 35799999999999999999999999999998753
No 100
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=28.77 E-value=41 Score=19.49 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=9.1
Q ss_pred CCccEEEEeCCCCC
Q 009616 274 PHLRKLVLFLPHFN 287 (531)
Q Consensus 274 ~~L~~L~L~~~~~~ 287 (531)
++|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45667777766664
No 101
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=21.01 E-value=1.8e+02 Score=26.83 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=23.2
Q ss_pred CCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCC
Q 009616 182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG 220 (531)
Q Consensus 182 l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~ 220 (531)
+.+|+.=++++..+....+...-.-|.++|--.|.+|..
T Consensus 170 ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNf 208 (302)
T KOG1665|consen 170 CAKLERADLEGSILHCAILREVEMLCANAEGASLKGCNF 208 (302)
T ss_pred hhhhcccccccchhhhhhhhhhhheecccccccccCcCC
Confidence 555666666655554444454444567777777777665
Done!