Query 009616
Match_columns 531
No_of_seqs 498 out of 2927
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 3.6E-27 1.2E-31 253.9 15.2 437 1-464 1-498 (592)
2 2p1m_B Transport inhibitor res 99.9 1.5E-27 5.2E-32 256.9 5.7 38 6-43 2-40 (594)
3 2ast_B S-phase kinase-associat 99.9 1.2E-23 4.1E-28 210.0 10.3 233 6-310 5-258 (336)
4 3rgz_A Protein brassinosteroid 99.8 5.7E-21 1.9E-25 211.6 6.5 75 352-439 647-721 (768)
5 3rgz_A Protein brassinosteroid 99.8 8.5E-20 2.9E-24 202.2 11.0 284 158-463 197-499 (768)
6 4fcg_A Uncharacterized protein 99.8 1.2E-18 4.1E-23 173.1 14.5 178 128-312 75-266 (328)
7 4eco_A Uncharacterized protein 99.8 2.9E-19 1E-23 193.5 9.0 169 134-310 206-413 (636)
8 4fmz_A Internalin; leucine ric 99.8 2.3E-18 7.9E-23 172.4 14.9 145 157-309 84-231 (347)
9 4ecn_A Leucine-rich repeat pro 99.8 1.1E-18 3.8E-23 193.2 10.4 171 134-310 448-655 (876)
10 3v47_A TOLL-like receptor 5B a 99.8 8.2E-19 2.8E-23 182.4 8.5 302 157-479 75-421 (455)
11 4fmz_A Internalin; leucine ric 99.7 3.5E-18 1.2E-22 171.1 12.0 272 133-432 43-321 (347)
12 2id5_A Lingo-1, leucine rich r 99.7 6.5E-19 2.2E-23 184.4 5.8 280 134-433 32-331 (477)
13 2z81_A CD282 antigen, TOLL-lik 99.7 3.1E-18 1.1E-22 182.4 10.7 75 387-479 448-523 (549)
14 3vq2_A TLR4, TOLL-like recepto 99.7 7.1E-19 2.4E-23 189.7 5.1 170 157-330 281-458 (606)
15 1o6v_A Internalin A; bacterial 99.7 5.5E-17 1.9E-21 169.2 18.0 59 157-218 86-144 (466)
16 3v47_A TOLL-like receptor 5B a 99.7 2E-18 7E-23 179.4 6.8 273 134-437 79-410 (455)
17 3t6q_A CD180 antigen; protein- 99.7 5.8E-18 2E-22 182.6 10.0 246 157-433 274-534 (606)
18 2id5_A Lingo-1, leucine rich r 99.7 4.1E-18 1.4E-22 178.3 7.9 292 148-464 21-330 (477)
19 1ogq_A PGIP-2, polygalacturona 99.7 1.9E-18 6.4E-23 170.6 4.8 240 134-432 50-301 (313)
20 4eco_A Uncharacterized protein 99.7 3.5E-18 1.2E-22 185.1 6.9 300 134-463 249-596 (636)
21 3vq2_A TLR4, TOLL-like recepto 99.7 5.1E-18 1.8E-22 183.0 8.0 82 134-219 80-164 (606)
22 1o6v_A Internalin A; bacterial 99.7 9.6E-17 3.3E-21 167.4 17.3 288 134-462 90-383 (466)
23 3t6q_A CD180 antigen; protein- 99.7 1.3E-17 4.4E-22 179.9 7.7 274 134-437 278-562 (606)
24 4fcg_A Uncharacterized protein 99.7 3E-17 1E-21 163.0 9.7 148 160-312 80-242 (328)
25 4ecn_A Leucine-rich repeat pro 99.7 1.3E-17 4.5E-22 184.6 7.6 301 133-464 490-837 (876)
26 3bz5_A Internalin-J, INLJ; leu 99.7 1.6E-17 5.5E-22 172.4 7.4 251 157-433 81-350 (457)
27 2z81_A CD282 antigen, TOLL-lik 99.7 9.7E-17 3.3E-21 170.9 13.2 147 135-285 27-183 (549)
28 2z80_A TOLL-like receptor 2, v 99.7 2.1E-16 7.2E-21 158.6 13.9 247 162-433 53-312 (353)
29 3o6n_A APL1; leucine-rich repe 99.7 3.9E-17 1.3E-21 166.3 7.6 267 159-462 67-347 (390)
30 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-17 5.1E-22 173.1 4.1 323 131-464 25-408 (461)
31 3j0a_A TOLL-like receptor 5; m 99.7 5.9E-16 2E-20 173.2 16.2 192 134-329 73-347 (844)
32 2z63_A TOLL-like receptor 4, v 99.7 6.7E-17 2.3E-21 172.8 7.7 249 153-432 274-528 (570)
33 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-17 5E-22 173.2 2.4 316 135-464 4-380 (461)
34 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-16 4.5E-21 178.4 10.2 281 134-433 24-373 (844)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 8.2E-16 2.8E-20 164.2 15.3 143 296-464 350-507 (562)
36 2p1m_B Transport inhibitor res 99.7 1.4E-16 4.7E-21 171.3 9.2 310 133-464 129-516 (594)
37 2z7x_B TOLL-like receptor 1, v 99.7 1.9E-16 6.4E-21 167.5 10.1 121 134-263 21-149 (520)
38 2z7x_B TOLL-like receptor 1, v 99.6 5.5E-16 1.9E-20 163.9 13.4 296 134-464 69-478 (520)
39 3bz5_A Internalin-J, INLJ; leu 99.6 1.2E-16 3.9E-21 166.0 7.3 296 133-463 41-348 (457)
40 3oja_B Anopheles plasmodium-re 99.6 9.9E-17 3.4E-21 172.5 6.7 289 135-463 52-354 (597)
41 3o6n_A APL1; leucine-rich repe 99.6 3.9E-16 1.3E-20 158.8 10.4 268 133-432 68-349 (390)
42 2z63_A TOLL-like receptor 4, v 99.6 1.6E-16 5.5E-21 169.9 7.7 82 134-219 76-160 (570)
43 1xku_A Decorin; proteoglycan, 99.6 3.1E-16 1.1E-20 155.8 8.8 263 135-432 32-303 (330)
44 1ziw_A TOLL-like receptor 3; i 99.6 2.4E-16 8.1E-21 172.3 8.5 286 134-432 222-570 (680)
45 3ogk_B Coronatine-insensitive 99.6 3.4E-16 1.2E-20 168.2 9.1 285 134-433 164-524 (592)
46 2ast_B S-phase kinase-associat 99.6 1.9E-16 6.5E-21 157.6 6.5 251 125-405 37-308 (336)
47 3oja_B Anopheles plasmodium-re 99.6 5.9E-16 2E-20 166.5 9.7 256 134-434 75-357 (597)
48 2z66_A Variable lymphocyte rec 99.6 2.2E-16 7.6E-21 155.1 5.4 237 148-437 17-263 (306)
49 1ziw_A TOLL-like receptor 3; i 99.6 5.7E-16 1.9E-20 169.3 8.1 287 134-434 25-341 (680)
50 3g06_A SSPH2 (leucine-rich rep 99.6 6.1E-15 2.1E-19 157.9 15.8 255 133-433 39-295 (622)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 7E-16 2.4E-20 164.7 7.8 100 134-241 52-157 (562)
52 2ft3_A Biglycan; proteoglycan, 99.6 9.9E-16 3.4E-20 152.3 7.7 262 135-432 34-304 (332)
53 1xku_A Decorin; proteoglycan, 99.6 6E-15 2.1E-19 146.5 12.9 266 134-432 52-329 (330)
54 2z66_A Variable lymphocyte rec 99.6 5.5E-16 1.9E-20 152.3 4.9 220 134-375 28-261 (306)
55 1ogq_A PGIP-2, polygalacturona 99.6 4.3E-15 1.5E-19 146.4 11.1 172 134-311 76-256 (313)
56 1ozn_A Reticulon 4 receptor; N 99.6 1.3E-15 4.6E-20 147.9 6.8 207 149-374 22-237 (285)
57 2ft3_A Biglycan; proteoglycan, 99.6 5.9E-16 2E-20 153.9 3.9 266 134-432 54-330 (332)
58 3o53_A Protein LRIM1, AGAP0063 99.6 3.6E-15 1.2E-19 147.3 9.0 243 122-398 20-270 (317)
59 3zyj_A Leucine-rich repeat-con 99.6 2.1E-15 7.1E-20 156.0 7.3 150 156-308 83-240 (440)
60 3zyi_A Leucine-rich repeat-con 99.6 1.6E-15 5.6E-20 157.4 6.3 169 135-309 76-252 (452)
61 3oja_A Leucine-rich immune mol 99.6 6.6E-15 2.3E-19 154.1 10.8 230 135-398 35-270 (487)
62 3zyi_A Leucine-rich repeat-con 99.6 1.1E-14 3.6E-19 151.3 11.6 216 148-370 64-299 (452)
63 1jl5_A Outer protein YOPM; leu 99.6 2.5E-14 8.6E-19 148.2 14.0 155 161-330 131-287 (454)
64 3zyj_A Leucine-rich repeat-con 99.5 1.2E-14 4E-19 150.4 10.8 176 148-329 53-240 (440)
65 3oja_A Leucine-rich immune mol 99.5 2.2E-15 7.7E-20 157.6 5.0 151 152-310 21-180 (487)
66 1ozn_A Reticulon 4 receptor; N 99.5 1.8E-14 6E-19 140.0 9.3 171 134-310 32-212 (285)
67 3rfs_A Internalin B, repeat mo 99.5 1.1E-14 3.9E-19 140.4 7.4 171 133-310 40-216 (272)
68 1wwl_A Monocyte differentiatio 99.5 2.1E-15 7.1E-20 148.6 1.4 237 159-432 41-306 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.5 5.7E-15 1.9E-19 145.8 4.5 211 159-432 32-247 (317)
70 4g8a_A TOLL-like receptor 4; l 99.5 4.1E-14 1.4E-18 152.9 10.2 170 250-434 369-554 (635)
71 2ca6_A RAN GTPase-activating p 99.5 1.2E-14 4.2E-19 147.5 5.2 59 252-310 159-227 (386)
72 1h6u_A Internalin H; cell adhe 99.5 1.3E-13 4.3E-18 135.5 12.0 166 133-311 40-207 (308)
73 3g06_A SSPH2 (leucine-rich rep 99.5 1.4E-13 5E-18 147.3 12.9 234 134-403 61-297 (622)
74 1h6u_A Internalin H; cell adhe 99.5 1.3E-13 4.4E-18 135.5 11.5 145 158-310 38-184 (308)
75 1wwl_A Monocyte differentiatio 99.5 6.3E-15 2.2E-19 145.2 1.5 149 159-309 93-263 (312)
76 1p9a_G Platelet glycoprotein I 99.5 2.2E-13 7.5E-18 132.5 10.9 199 157-375 6-208 (290)
77 2o6q_A Variable lymphocyte rec 99.4 2.3E-13 7.7E-18 131.0 10.2 169 135-309 38-215 (270)
78 2o6q_A Variable lymphocyte rec 99.4 2.5E-13 8.6E-18 130.7 10.1 168 135-310 17-192 (270)
79 2xwt_C Thyrotropin receptor; s 99.4 1.9E-13 6.5E-18 129.0 8.3 145 162-310 32-190 (239)
80 2z80_A TOLL-like receptor 2, v 99.4 1.2E-13 4.3E-18 138.3 7.3 171 134-310 52-233 (353)
81 2z62_A TOLL-like receptor 4, v 99.4 2.6E-13 9E-18 130.9 9.1 159 148-310 17-188 (276)
82 1jl5_A Outer protein YOPM; leu 99.4 2.6E-13 8.8E-18 140.6 9.5 269 134-436 131-410 (454)
83 4glp_A Monocyte differentiatio 99.4 1.2E-13 4.3E-18 135.7 6.7 181 122-310 79-283 (310)
84 3rfs_A Internalin B, repeat mo 99.4 3.8E-13 1.3E-17 129.6 8.6 150 157-310 37-192 (272)
85 2ca6_A RAN GTPase-activating p 99.4 1.6E-14 5.5E-19 146.7 -1.3 248 152-434 23-315 (386)
86 3m19_A Variable lymphocyte rec 99.4 4.3E-13 1.5E-17 127.6 8.4 168 135-310 15-190 (251)
87 2xwt_C Thyrotropin receptor; s 99.4 5.7E-13 2E-17 125.7 9.0 169 135-309 32-215 (239)
88 2z62_A TOLL-like receptor 4, v 99.4 2.5E-13 8.6E-18 131.1 6.6 170 134-310 28-211 (276)
89 1p9a_G Platelet glycoprotein I 99.4 6.2E-13 2.1E-17 129.3 8.9 166 135-310 11-183 (290)
90 1h6t_A Internalin B; cell adhe 99.4 2E-12 7E-17 125.7 11.2 165 133-310 45-211 (291)
91 3goz_A Leucine-rich repeat-con 99.3 3.7E-13 1.3E-17 135.3 4.6 158 153-310 14-207 (362)
92 1h6t_A Internalin B; cell adhe 99.3 2.5E-12 8.6E-17 125.1 9.9 146 158-310 43-189 (291)
93 4ezg_A Putative uncharacterize 99.3 2.8E-12 9.6E-17 117.1 8.9 146 134-309 44-191 (197)
94 4glp_A Monocyte differentiatio 99.3 1.2E-12 4.2E-17 128.6 6.6 151 159-310 89-262 (310)
95 4ezg_A Putative uncharacterize 99.3 3.2E-12 1.1E-16 116.8 8.8 127 158-310 41-170 (197)
96 1m9s_A Internalin B; cell inva 99.3 3.2E-12 1.1E-16 136.7 8.9 166 133-311 42-209 (605)
97 3goz_A Leucine-rich repeat-con 99.3 1E-12 3.6E-17 132.0 4.4 253 165-433 2-295 (362)
98 1xeu_A Internalin C; cellular 99.3 9E-12 3.1E-16 119.3 8.5 146 156-310 36-183 (263)
99 1m9s_A Internalin B; cell inva 99.2 8.2E-12 2.8E-16 133.5 8.8 166 157-330 39-207 (605)
100 3m19_A Variable lymphocyte rec 99.2 1.3E-11 4.5E-16 117.2 7.8 151 134-289 35-194 (251)
101 3cvr_A Invasion plasmid antige 99.2 7.2E-11 2.5E-15 124.9 12.1 133 134-287 59-193 (571)
102 2o6s_A Variable lymphocyte rec 99.2 2E-11 6.9E-16 112.4 6.4 138 149-310 18-159 (208)
103 2o6s_A Variable lymphocyte rec 99.2 1.5E-11 5.3E-16 113.2 5.3 103 134-241 28-135 (208)
104 2v70_A SLIT-2, SLIT homolog 2 99.2 3.2E-11 1.1E-15 112.1 7.1 136 151-310 24-164 (220)
105 3cvr_A Invasion plasmid antige 99.2 9.6E-11 3.3E-15 124.0 11.0 155 134-313 80-244 (571)
106 4ay9_X Follicle-stimulating ho 99.2 7.4E-11 2.5E-15 117.9 9.7 158 149-310 20-188 (350)
107 4ay9_X Follicle-stimulating ho 99.1 6.8E-11 2.3E-15 118.1 9.4 210 134-369 30-254 (350)
108 2ell_A Acidic leucine-rich nuc 99.1 2.6E-11 9E-16 107.5 5.5 127 161-310 24-158 (168)
109 4g8a_A TOLL-like receptor 4; l 99.1 3.5E-11 1.2E-15 129.8 6.4 268 134-437 306-582 (635)
110 3e6j_A Variable lymphocyte rec 99.1 7.9E-11 2.7E-15 110.2 7.6 138 149-310 30-170 (229)
111 3e6j_A Variable lymphocyte rec 99.1 1.1E-10 3.8E-15 109.2 7.8 123 163-310 21-146 (229)
112 1xeu_A Internalin C; cellular 99.1 2E-11 6.7E-16 116.9 2.3 144 159-310 17-161 (263)
113 2je0_A Acidic leucine-rich nuc 99.1 1.9E-11 6.5E-16 106.1 1.2 125 160-307 16-148 (149)
114 2v9t_B SLIT homolog 2 protein 99.1 1.5E-10 5.1E-15 107.6 7.1 138 149-310 22-163 (220)
115 2v9t_B SLIT homolog 2 protein 99.1 1.3E-10 4.3E-15 108.1 6.5 129 134-287 32-165 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.0 1.8E-10 6E-15 107.1 6.6 130 134-288 32-167 (220)
117 2xot_A Amphoterin-induced prot 99.0 1.4E-10 4.8E-15 116.4 6.2 159 148-310 28-200 (361)
118 2ell_A Acidic leucine-rich nuc 99.0 2.1E-10 7.3E-15 101.6 6.4 105 134-241 24-131 (168)
119 2je0_A Acidic leucine-rich nuc 99.0 2.5E-10 8.4E-15 99.0 5.3 105 134-241 17-124 (149)
120 1dce_A Protein (RAB geranylger 99.0 5.7E-12 1.9E-16 133.8 -7.0 149 158-310 346-519 (567)
121 1ds9_A Outer arm dynein; leuci 99.0 4.3E-11 1.5E-15 109.3 -1.3 134 150-305 37-180 (198)
122 1a9n_A U2A', U2A'; complex (nu 98.9 2.6E-10 8.9E-15 101.9 2.4 131 157-311 15-152 (176)
123 1a9n_A U2A', U2A'; complex (nu 98.9 4.1E-10 1.4E-14 100.6 2.8 129 179-331 15-151 (176)
124 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 1.5E-09 5.1E-14 75.8 3.6 39 6-44 5-43 (53)
125 2xot_A Amphoterin-induced prot 98.8 3.5E-09 1.2E-13 106.1 6.5 144 163-310 20-174 (361)
126 1w8a_A SLIT protein; signaling 98.8 4.3E-09 1.5E-13 95.4 5.6 66 151-219 21-89 (192)
127 3un9_A NLR family member X1; l 98.8 5.5E-10 1.9E-14 112.3 -0.5 60 251-310 182-250 (372)
128 1ds9_A Outer arm dynein; leuci 98.7 1.1E-09 3.8E-14 99.8 0.3 109 178-311 43-152 (198)
129 1w8a_A SLIT protein; signaling 98.7 1.2E-08 4E-13 92.5 5.3 124 164-289 11-141 (192)
130 4b8c_D Glucose-repressible alc 98.7 7.4E-09 2.5E-13 113.3 4.0 107 179-288 220-330 (727)
131 2wfh_A SLIT homolog 2 protein 98.7 3.3E-08 1.1E-12 89.6 7.4 120 164-310 13-137 (193)
132 1dce_A Protein (RAB geranylger 98.6 1.8E-08 6.2E-13 106.9 5.7 118 184-306 442-567 (567)
133 2o6r_A Variable lymphocyte rec 98.6 3.9E-08 1.3E-12 87.7 5.9 35 161-195 28-64 (177)
134 2ra8_A Uncharacterized protein 98.6 1.9E-07 6.5E-12 93.0 10.3 204 86-310 92-318 (362)
135 2ra8_A Uncharacterized protein 98.6 1.2E-07 4.1E-12 94.4 8.9 131 199-330 163-317 (362)
136 2wfh_A SLIT homolog 2 protein 98.6 6.3E-08 2.2E-12 87.7 6.1 115 148-287 20-139 (193)
137 3sb4_A Hypothetical leucine ri 98.5 4.9E-08 1.7E-12 96.4 5.6 54 160-215 100-155 (329)
138 2o6r_A Variable lymphocyte rec 98.5 9.8E-08 3.3E-12 85.0 6.5 123 163-288 9-138 (177)
139 3un9_A NLR family member X1; l 98.5 7.1E-09 2.4E-13 104.1 -1.6 163 129-293 67-258 (372)
140 4b8c_D Glucose-repressible alc 98.5 4.9E-08 1.7E-12 106.8 4.5 109 200-311 216-328 (727)
141 3e4g_A ATP synthase subunit S, 98.5 1.7E-07 5.7E-12 82.5 5.9 91 151-241 51-150 (176)
142 3sb4_A Hypothetical leucine ri 98.4 4E-07 1.4E-11 89.8 6.7 78 229-308 225-306 (329)
143 3g39_A Variable lymphocyte rec 98.3 4.9E-07 1.7E-11 80.0 4.1 98 136-240 11-112 (170)
144 2r9u_A Variable lymphocyte rec 98.2 8E-07 2.7E-11 78.9 5.0 69 149-220 23-93 (174)
145 4fdw_A Leucine rich hypothetic 98.2 2.8E-06 9.6E-11 86.0 8.4 213 161-400 135-355 (401)
146 3g39_A Variable lymphocyte rec 98.2 1.5E-06 5.1E-11 76.8 5.2 55 162-219 10-65 (170)
147 3e4g_A ATP synthase subunit S, 98.1 1.2E-06 4.2E-11 77.0 3.8 42 182-224 60-101 (176)
148 4fdw_A Leucine rich hypothetic 98.0 2.1E-05 7E-10 79.6 10.4 164 135-308 136-309 (401)
149 2r9u_A Variable lymphocyte rec 98.0 9.2E-06 3.1E-10 71.9 6.3 60 250-310 55-116 (174)
150 2e31_A FBS1, F-box only protei 97.9 4.6E-06 1.6E-10 79.3 3.6 36 8-43 49-85 (297)
151 3l2o_B F-box only protein 4; s 97.9 2.8E-06 9.4E-11 79.9 1.6 35 9-43 4-38 (312)
152 1io0_A Tropomodulin; LRR prote 97.8 8.6E-06 2.9E-10 72.9 3.7 60 251-310 92-162 (185)
153 2ifg_A High affinity nerve gro 97.7 1.7E-05 5.9E-10 78.5 4.3 90 149-241 20-114 (347)
154 1io0_A Tropomodulin; LRR prote 97.6 1.3E-05 4.4E-10 71.8 1.8 62 159-220 34-105 (185)
155 3v7d_B Cell division control p 97.6 1.7E-05 5.9E-10 81.4 2.3 42 4-45 9-50 (464)
156 2ifg_A High affinity nerve gro 97.6 3.6E-05 1.2E-09 76.1 4.2 75 165-241 12-91 (347)
157 2ovr_B FBW7, F-BOX/WD repeat p 97.5 5.6E-05 1.9E-09 77.2 4.0 41 3-43 12-52 (445)
158 1p22_A F-BOX/WD-repeat protein 97.4 3.8E-05 1.3E-09 78.4 2.4 42 2-43 3-48 (435)
159 4fs7_A Uncharacterized protein 97.4 0.00028 9.4E-09 71.1 7.4 54 250-307 251-305 (394)
160 4fs7_A Uncharacterized protein 97.2 0.0002 6.7E-09 72.2 4.1 55 251-307 229-284 (394)
161 3rw6_A Nuclear RNA export fact 97.0 0.00019 6.5E-09 67.7 1.4 59 160-220 169-232 (267)
162 4gt6_A Cell surface protein; l 96.9 0.0012 4E-08 66.4 7.2 78 157-238 83-168 (394)
163 3rw6_A Nuclear RNA export fact 96.8 0.00058 2E-08 64.4 2.8 13 275-287 221-233 (267)
164 4gt6_A Cell surface protein; l 95.7 0.019 6.4E-07 57.5 7.5 56 250-307 286-342 (394)
165 1pgv_A TMD-1, tropomodulin TMD 94.8 0.032 1.1E-06 49.6 5.4 21 198-218 31-51 (197)
166 4h09_A Hypothetical leucine ri 92.2 0.17 5.9E-06 50.0 6.1 12 180-191 155-166 (379)
167 4h09_A Hypothetical leucine ri 92.2 0.14 4.9E-06 50.6 5.4 104 204-308 213-319 (379)
168 1pgv_A TMD-1, tropomodulin TMD 91.8 0.041 1.4E-06 49.0 0.8 98 121-218 26-136 (197)
169 3rfe_A Platelet glycoprotein I 87.3 0.51 1.7E-05 38.8 4.0 42 152-195 24-67 (130)
170 3rfe_A Platelet glycoprotein I 72.9 2.1 7.2E-05 35.0 2.8 34 275-309 32-65 (130)
171 2kwv_A RAD30 homolog B, DNA po 34.5 29 0.001 22.1 2.5 19 6-24 17-35 (48)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.6e-27 Score=253.94 Aligned_cols=437 Identities=13% Similarity=0.082 Sum_probs=240.2
Q ss_pred CCCCCCCccCC----CCChHHHHHHhcCC-ChHHHHHHhhhhhhhhhhhccCC-eeeeecCccccc-cccccccccc---
Q 009616 1 MDETVDADHIS----DLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQTSFP-VLDFDQNNFLVK-SRVKRVLPFN--- 70 (531)
Q Consensus 1 ~~~~~~~D~is----~LPd~iL~~Ils~L-~~~d~~r~s~vSkrWr~lw~~~~-~L~f~~~~~~~~-~~~~~~~~~~--- 70 (531)
|++. +.||++ +|||||+.+||+|| +.+|++++++|||||++++...+ .+.+. ..+... .+.-+.+|.-
T Consensus 1 m~~~-~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L 78 (592)
T 3ogk_B 1 MEDP-DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYTATPDRLSRRFPNLRSL 78 (592)
T ss_dssp ------------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGGSCHHHHHHHCTTCSEE
T ss_pred CCCh-hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccccChHHHHHhCCCCeEE
Confidence 5554 567776 89999999999999 89999999999999999853322 22111 111000 0000000000
Q ss_pred -------hhhh-hhhhhhhHhHHHHHHHHHHHhcccccCCCccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEe
Q 009616 71 -------LEDM-MSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFE 142 (531)
Q Consensus 71 -------~~d~-~~~~~~~~~~~~f~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~ 142 (531)
..|+ ........... ..+..+. .....++.+.+.... .......|+......++++|++.
T Consensus 79 ~L~~~~~~~~~~~~~~~~~~~~~---~~l~~l~----~~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 79 KLKGKPRAAMFNLIPENWGGYVT---PWVTEIS----NNLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp EEECSCGGGGGTCSCTTSCCBCH---HHHHHHH----HHCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEE
T ss_pred EecCCcchhhcccccccccccch---HHHHHHH----hhCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECc
Confidence 0000 00000000000 0111111 112346666665221 12334445544443457888776
Q ss_pred eecCCCccccCCccccCCCCccEEEecCCcCCCC------cCCCCCCccCEEEeeeEEec---hHhHHHHHhCCcccceE
Q 009616 143 VITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQP------SHCANLQSLKKLSLDEVYVN---DQMVQSLVRECRVLEDL 213 (531)
Q Consensus 143 ~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~L~~~~~~---~~~l~~~l~~~~~Le~L 213 (531)
... ......++.....|++|++|+|++|.+.+. ....++++|++|++++|.++ ...++.++.+|++|++|
T Consensus 147 ~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 147 KCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp SCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred CCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 511 011122333334678888888888876541 12346788888888877764 45677777788888888
Q ss_pred EeeecCCcce-eeccccccccEEEEEeeccc-----cceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCC
Q 009616 214 SFFYCFGLKR-LRISEAHKLKSLILRFTYQE-----LESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 214 ~L~~c~~~~~-l~~~~l~~L~~L~l~~~~~~-----l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~ 286 (531)
++.+|...+. -.+.++++|+.|+++.+... .......+++|+.|.++++. ...+..+..+++|++|+|+++.+
T Consensus 226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 8888754331 11335678888888754311 11222356778888887765 55566677888999999988888
Q ss_pred ChhhhhhhhcCCCCCcEEEeccccc---hhHHHhcCcccceecccc----------ccchh-----hhcccCCCcceeEe
Q 009616 287 NDQEFHPLISKFPLLEDLSIISLET---LERIMISSNRLMHLEVYN----------CSGLN-----RINVDAPNLVSFDF 348 (531)
Q Consensus 287 ~~~~~~~~l~~~~~L~~L~L~~c~~---l~~l~~~~~~L~~L~l~~----------c~~L~-----~l~~~~~nL~sl~~ 348 (531)
++..+..++.++++|+.|++.++.. +..+...+++|++|++.+ |..+. .+.-..++|+++.+
T Consensus 306 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 8777767778889999998885422 334444567888888884 65543 22234678888877
Q ss_pred ecCCcC----ceec-CCCCCcEEEEEe---eccCChhh-hhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCC
Q 009616 349 EDNPIP----IVST-NAPCPLNVLFSN---FGDIDTHW-YLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLP 419 (531)
Q Consensus 349 ~~~~~p----~~~~-~~~~L~~L~l~~---~~~~~~~~-~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~ 419 (531)
....+. ..++ .+++|+.|+++. .+.+.+.. ...+..++.++++|+.|+++.+........+..+. .
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-----~ 460 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-----Q 460 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----H
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-----H
Confidence 555443 2223 377888888863 12222210 12355667778888888887533211110111111 1
Q ss_pred CCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC
Q 009616 420 LQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE 464 (531)
Q Consensus 420 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~ 464 (531)
.+++|++|+|..+. ... .++...+-.+++++.|.+..+
T Consensus 461 ~~~~L~~L~L~~n~----l~~---~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG----ESD---EGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp SCTTCCEEEECSCC----SSH---HHHHHHHTCCTTCCEEEEESC
T ss_pred hCccceEeeccCCC----CCH---HHHHHHHhcCcccCeeeccCC
Confidence 25678888887662 121 123333344567788888554
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.5e-27 Score=256.94 Aligned_cols=38 Identities=18% Similarity=0.479 Sum_probs=29.5
Q ss_pred CCccCCCCChHHHHHHhcCCC-hHHHHHHhhhhhhhhhh
Q 009616 6 DADHISDLPTFIIHHIMSFLS-PKDVVRTGILSTTWRKF 43 (531)
Q Consensus 6 ~~D~is~LPd~iL~~Ils~L~-~~d~~r~s~vSkrWr~l 43 (531)
+.|++++|||||+.+||+||+ .+|++++++|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 358999999999999999999 99999999999999987
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.2e-23 Score=210.00 Aligned_cols=233 Identities=19% Similarity=0.264 Sum_probs=134.2
Q ss_pred CCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhcc---CCeeeeecCccccccccccccccchhhhhhhhhhhH
Q 009616 6 DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS---FPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCK 82 (531)
Q Consensus 6 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~~---~~~L~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 82 (531)
+...+++|||||+.+||+||+.+|+++++.|||||+++... ...+++....+
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~------------------------- 59 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL------------------------- 59 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC-------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC-------------------------
Confidence 44578999999999999999999999999999999998532 12233322221
Q ss_pred hHHHHHHHHHHHhcccccCCCccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEeeecCCCccccCCccccCCCC
Q 009616 83 SLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKL 162 (531)
Q Consensus 83 ~~~~f~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~ 162 (531)
. +..+.....++++.+++.. ......+..++.+++
T Consensus 60 --------------------------------------~---~~~~~~~~~~~l~~L~l~~----n~l~~~~~~~~~~~~ 94 (336)
T 2ast_B 60 --------------------------------------H---PDVTGRLLSQGVIAFRCPR----SFMDQPLAEHFSPFR 94 (336)
T ss_dssp --------------------------------------C---HHHHHHHHHTTCSEEECTT----CEECSCCCSCCCCBC
T ss_pred --------------------------------------C---HHHHHhhhhccceEEEcCC----ccccccchhhccCCC
Confidence 0 1112222234555555543 112223333556667
Q ss_pred ccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce--ee--ccccccccEE
Q 009616 163 LTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LR--ISEAHKLKSL 235 (531)
Q Consensus 163 L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~--l~--~~~l~~L~~L 235 (531)
|++|+|++|.+.+ +..+.++++|++|+|++|.+++. ....++.+++|++|++++|..++. +. +.++++|++|
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 7777777766543 33455667777777776666443 233455677777777776644332 11 2345666666
Q ss_pred EEEee-c-c--ccceeeeeCC-cccEEEecccc-----ccceeeccCCCCccEEEEeCCC-CChhhhhhhhcCCCCCcEE
Q 009616 236 ILRFT-Y-Q--ELESVEIAVP-SLQQLELSFSR-----VPRLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLEDL 304 (531)
Q Consensus 236 ~l~~~-~-~--~l~~~~~~~~-~L~~L~l~~~~-----~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~L~~L 304 (531)
++++| . . .++.....++ +|++|++++|. ...+..+..+++|+.|+++++. +++..+. .+.++++|+.|
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L 252 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHL 252 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEE
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEe
Confidence 66666 3 1 1233334566 66666666663 1223344566666666666666 4543333 34556666666
Q ss_pred Eecccc
Q 009616 305 SIISLE 310 (531)
Q Consensus 305 ~L~~c~ 310 (531)
++++|.
T Consensus 253 ~l~~~~ 258 (336)
T 2ast_B 253 SLSRCY 258 (336)
T ss_dssp ECTTCT
T ss_pred eCCCCC
Confidence 666664
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=5.7e-21 Score=211.62 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=46.1
Q ss_pred CcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEE
Q 009616 352 PIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMES 431 (531)
Q Consensus 352 ~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~ 431 (531)
.+|..++++++|+.|+++. +.+. +.++..++++++|+.|+|+.|...+. +|+ .+..++.|++|+|+.
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~-N~l~----g~ip~~l~~L~~L~~LdLs~N~l~g~--ip~------~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGH-NDIS----GSIPDEVGDLRGLNILDLSSNKLDGR--IPQ------AMSALTMLTEIDLSN 713 (768)
T ss_dssp CCCGGGGGCTTCCEEECCS-SCCC----SCCCGGGGGCTTCCEEECCSSCCEEC--CCG------GGGGCCCCSEEECCS
T ss_pred cCCHHHhccccCCEEeCcC-CccC----CCCChHHhCCCCCCEEECCCCcccCc--CCh------HHhCCCCCCEEECcC
Confidence 3456666777777777774 3333 23334456777777777776666655 562 344556777777777
Q ss_pred eeeccCCC
Q 009616 432 FSLYMDVV 439 (531)
Q Consensus 432 ~~~~~~~~ 439 (531)
|...|+.+
T Consensus 714 N~l~g~iP 721 (768)
T 3rgz_A 714 NNLSGPIP 721 (768)
T ss_dssp SEEEEECC
T ss_pred CcccccCC
Confidence 76655543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=8.5e-20 Score=202.19 Aligned_cols=284 Identities=16% Similarity=0.099 Sum_probs=190.3
Q ss_pred cCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616 158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (531)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~ 236 (531)
..+++|++|+|++|.+.+ .+.++++++|++|++++|.+.+. ++..++.+++|++|++++|...+.++...+++|++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 678889999999998877 44588899999999999988543 5666889999999999999876655555788999999
Q ss_pred EEeec--cccceeeee-CCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616 237 LRFTY--QELESVEIA-VPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (531)
Q Consensus 237 l~~~~--~~l~~~~~~-~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~ 311 (531)
+++|. +.++..... +++|++|++++|. +..|..++.+++|+.|++++|.+++......+.++++|+.|++++|..
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 99887 234443333 5899999999998 567778899999999999999888655555578899999999998854
Q ss_pred hhH----HHhcCcccceeccccccch----hhhcc-cCCCcceeEeecCC----cCceecCCCCCcEEEEEeeccCChhh
Q 009616 312 LER----IMISSNRLMHLEVYNCSGL----NRINV-DAPNLVSFDFEDNP----IPIVSTNAPCPLNVLFSNFGDIDTHW 378 (531)
Q Consensus 312 l~~----l~~~~~~L~~L~l~~c~~L----~~l~~-~~~nL~sl~~~~~~----~p~~~~~~~~L~~L~l~~~~~~~~~~ 378 (531)
... +....++|+.|++.++.-- ..+.. ..++|+.+.+.+.. +|..+.++++|+.|+++. +.+.
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~--- 431 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF-NYLS--- 431 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS-SEEE---
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC-Cccc---
Confidence 211 1111237788877765311 01100 02345555554443 345666778888888874 2222
Q ss_pred hhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccc
Q 009616 379 YLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKN 458 (531)
Q Consensus 379 ~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~ 458 (531)
+.++..+.++++|+.|++..|...+. +|. .+..+++|++|++..|...+..+ ..+-.++.+++
T Consensus 432 -~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~------~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~ 494 (768)
T 3rgz_A 432 -GTIPSSLGSLSKLRDLKLWLNMLEGE--IPQ------ELMYVKTLETLILDFNDLTGEIP--------SGLSNCTNLNW 494 (768)
T ss_dssp -SCCCGGGGGCTTCCEEECCSSCCCSC--CCG------GGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCE
T ss_pred -CcccHHHhcCCCCCEEECCCCcccCc--CCH------HHcCCCCceEEEecCCcccCcCC--------HHHhcCCCCCE
Confidence 22234456777888877776665544 552 34455777788877774332211 12233456777
Q ss_pred eeecC
Q 009616 459 LCLSP 463 (531)
Q Consensus 459 l~l~~ 463 (531)
|.+..
T Consensus 495 L~L~~ 499 (768)
T 3rgz_A 495 ISLSN 499 (768)
T ss_dssp EECCS
T ss_pred EEccC
Confidence 77743
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=1.2e-18 Score=173.06 Aligned_cols=178 Identities=20% Similarity=0.229 Sum_probs=133.1
Q ss_pred HHHHHHcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhC
Q 009616 128 VELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRE 206 (531)
Q Consensus 128 l~~~~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~ 206 (531)
+..+...++++|++.. .....+|..++.+++|++|+|++|.+.. |..++++++|++|+|++|.+. .++..+++
T Consensus 75 l~~~~~~~l~~L~L~~----n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~ 148 (328)
T 4fcg_A 75 LEDATQPGRVALELRS----VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIAS 148 (328)
T ss_dssp HHHHTSTTCCEEEEES----SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGG
T ss_pred HhcccccceeEEEccC----CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhc
Confidence 3344446899999986 2345899999999999999999999887 778899999999999999886 35666889
Q ss_pred CcccceEEeeecCCcceeec-----------cccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCC
Q 009616 207 CRVLEDLSFFYCFGLKRLRI-----------SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAEC 273 (531)
Q Consensus 207 ~~~Le~L~L~~c~~~~~l~~-----------~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 273 (531)
+++|++|++++|...+.++. .++++|+.|++++|. ..++.....+++|++|++++|. ...+..++.+
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 99999999999987765542 236788888888876 3333334467777777777777 4445567777
Q ss_pred CCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccch
Q 009616 274 PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL 312 (531)
Q Consensus 274 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l 312 (531)
++|+.|++++|.+.+. ++..+.++++|+.|+|++|...
T Consensus 229 ~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 229 PKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp TTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTC
T ss_pred CCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCch
Confidence 7777777777776643 4445667777777777776543
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=2.9e-19 Score=193.51 Aligned_cols=169 Identities=10% Similarity=0.127 Sum_probs=117.9
Q ss_pred cCCcEEEEeeecCCCcccc------------------CCcccc--CCCCccEEEecCCcCCC--CcCCCCCCccCEEEee
Q 009616 134 NGVKELDFEVITDKNSVNA------------------LPQTIF--SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLD 191 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~------------------lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~ 191 (531)
+++++|+|+. +. ... +|..+. ++++|++|+|++|.+.+ |..++++++|++|+++
T Consensus 206 ~~L~~L~Ls~--n~--l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGN--SP--FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEES--CC--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred cCCCEEECcC--Cc--cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 5899999986 22 233 999999 99999999999999887 8889999999999999
Q ss_pred eEE-echHhHHHHHhCC------cccceEEeeecCCccee----eccccccccEEEEEeec-c-ccceeeeeCCcccEEE
Q 009616 192 EVY-VNDQMVQSLVREC------RVLEDLSFFYCFGLKRL----RISEAHKLKSLILRFTY-Q-ELESVEIAVPSLQQLE 258 (531)
Q Consensus 192 ~~~-~~~~~l~~~l~~~------~~Le~L~L~~c~~~~~l----~~~~l~~L~~L~l~~~~-~-~l~~~~~~~~~L~~L~ 258 (531)
+|. +++..++..++.+ ++|++|++++|... .+ .+.++++|+.|++++|. . .++ ....+++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 998 7663456555554 89999999988765 33 24577888888888886 2 444 333566777777
Q ss_pred ecccc-ccceeeccCCCC-ccEEEEeCCCCChhhhhhhhcCC--CCCcEEEecccc
Q 009616 259 LSFSR-VPRLLDVAECPH-LRKLVLFLPHFNDQEFHPLISKF--PLLEDLSIISLE 310 (531)
Q Consensus 259 l~~~~-~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~~l~~~--~~L~~L~L~~c~ 310 (531)
+++|. ...|..+..+++ |+.|++++|.++ . ++..+... ++|+.|++++|.
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~-lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK-Y-IPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCS-S-CCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCc-c-cchhhhhcccCccCEEECcCCc
Confidence 77766 444445666666 666666666665 2 22223322 245555555543
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=2.3e-18 Score=172.41 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=61.9
Q ss_pred ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee-ccccccccEE
Q 009616 157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-ISEAHKLKSL 235 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~-~~~l~~L~~L 235 (531)
+..+++|++|++++|.+...+.+.++++|++|++++|.+.+. +. +..+++|++|++++|.....+. +..+++|+.|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 344444555555444444433344444555555544444221 11 3444455555554443332211 2334445555
Q ss_pred EEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccc
Q 009616 236 ILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL 309 (531)
Q Consensus 236 ~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c 309 (531)
++++|. ..... ...+++|++|++++|. ...+ .+..+++|+.|+++++.+++... +..+++|+.|++++|
T Consensus 161 ~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 161 TVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN 231 (347)
T ss_dssp ECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred EecCCCcCCchh-hccCCCCCEEEccCCcccccc-cccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCC
Confidence 554443 11111 2234455555555544 1111 14445555555555554443211 344455555555554
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=1.1e-18 Score=193.17 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=124.1
Q ss_pred cCCcEEEEeeecCCCccc----------------cCCcccc--CCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeE
Q 009616 134 NGVKELDFEVITDKNSVN----------------ALPQTIF--SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEV 193 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~ 193 (531)
++++.|+|+. +..... .+|..+. ++++|++|+|++|.+.+ |..++++++|++|+|++|
T Consensus 448 ~~L~~L~Ls~--N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 448 TKLQIIYFAN--SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp TTCCEEEEES--CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCEEECcC--CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 5899999986 322210 2899887 99999999999998877 778899999999999999
Q ss_pred E-echHhHHHHHhCC-------cccceEEeeecCCcceee----ccccccccEEEEEeec-cccceeeeeCCcccEEEec
Q 009616 194 Y-VNDQMVQSLVREC-------RVLEDLSFFYCFGLKRLR----ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS 260 (531)
Q Consensus 194 ~-~~~~~l~~~l~~~-------~~Le~L~L~~c~~~~~l~----~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~ 260 (531)
. +++..++..++.+ ++|++|+|++|... .++ +.++++|+.|++++|. ..++ ....+++|+.|+++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence 8 6653455545544 59999999998765 432 4578889999998887 4333 33467888888888
Q ss_pred ccc-ccceeeccCCCC-ccEEEEeCCCCChhhhhhhhcCCC--CCcEEEecccc
Q 009616 261 FSR-VPRLLDVAECPH-LRKLVLFLPHFNDQEFHPLISKFP--LLEDLSIISLE 310 (531)
Q Consensus 261 ~~~-~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~~l~~~~--~L~~L~L~~c~ 310 (531)
+|. ...|..+..+++ |+.|+|++|.++ . ++..+...+ +|+.|+|++|.
T Consensus 604 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~-lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLK-Y-IPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp SSCCSCCCTTSCEECTTCCEEECCSSCCC-S-CCSCCCTTCSSCEEEEECCSSC
T ss_pred CCccccchHHHhhccccCCEEECcCCCCC-c-CchhhhccccCCCCEEECcCCc
Confidence 887 555666777887 888888888776 2 334343333 36666666654
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=8.2e-19 Score=182.40 Aligned_cols=302 Identities=14% Similarity=0.077 Sum_probs=150.7
Q ss_pred ccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHH-HHHhCCcccceEEeeecCCcceee---ccccc
Q 009616 157 IFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQ-SLVRECRVLEDLSFFYCFGLKRLR---ISEAH 230 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~~l~~~~~Le~L~L~~c~~~~~l~---~~~l~ 230 (531)
+..+++|++|+|++|.+.+ +..++++++|++|+|++|.+++..+. ..+..+++|++|+|++|...+..+ +.+++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 4444555555555554443 33444555555555555544322111 113445555555555554322211 23445
Q ss_pred cccEEEEEeec-ccc-ceeee--eCCcccEEEecccc-ccc-ee--------eccCCCCccEEEEeCCCCChhhhhhhhc
Q 009616 231 KLKSLILRFTY-QEL-ESVEI--AVPSLQQLELSFSR-VPR-LL--------DVAECPHLRKLVLFLPHFNDQEFHPLIS 296 (531)
Q Consensus 231 ~L~~L~l~~~~-~~l-~~~~~--~~~~L~~L~l~~~~-~~~-~~--------~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 296 (531)
+|++|++++|. ... +.... ..++|+.|++++|. ... +. .+..+++|+.|++++|.+++.....+..
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 55555555543 111 11111 12345555555544 111 00 1224466777777777776543332221
Q ss_pred --CCCCCcEEEeccccchhH---------------HHhcCcccceeccccccchh---hhcccCCCcceeEeecCCc---
Q 009616 297 --KFPLLEDLSIISLETLER---------------IMISSNRLMHLEVYNCSGLN---RINVDAPNLVSFDFEDNPI--- 353 (531)
Q Consensus 297 --~~~~L~~L~L~~c~~l~~---------------l~~~~~~L~~L~l~~c~~L~---~l~~~~~nL~sl~~~~~~~--- 353 (531)
..++|+.|++++|..... .....++|+.|++.++.--. ...-..++|+.+.+.+..+
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 236677777766532110 00112456666666542110 0111234666666665554
Q ss_pred -CceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 354 -PIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 354 -p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
|..+..+++|+.|++++ +.+... .+..+.++++|+.|+++.|..... .| . .+..+++|++|+|..|
T Consensus 315 ~~~~~~~l~~L~~L~Ls~-N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~--~~-----~-~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQ-NFLGSI----DSRMFENLDKLEVLDLSYNHIRAL--GD-----Q-SFLGLPNLKELALDTN 381 (455)
T ss_dssp CTTTTTTCTTCCEEECCS-SCCCEE----CGGGGTTCTTCCEEECCSSCCCEE--CT-----T-TTTTCTTCCEEECCSS
T ss_pred ChhHhcCcccCCEEECCC-CccCCc----ChhHhcCcccCCEEECCCCccccc--Ch-----h-hccccccccEEECCCC
Confidence 34566788999999985 444332 234567889999999987766443 34 2 5667899999999988
Q ss_pred eeccCCCchhHHHHHHhHhhhccccceeecCCCC-CchhhHHHHHHHh
Q 009616 433 SLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENW-RYRPFVMWFYDHL 479 (531)
Q Consensus 433 ~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~ 479 (531)
....- +. ..+-..+.+++|.+....+ ...+..+++..++
T Consensus 382 ~l~~~-~~-------~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 382 QLKSV-PD-------GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp CCSCC-CT-------TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred ccccC-CH-------hHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence 43211 11 1123456788998864421 2344444444443
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=3.5e-18 Score=171.08 Aligned_cols=272 Identities=17% Similarity=0.149 Sum_probs=188.0
Q ss_pred HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.+++++|++.. .....+|. +..+++|++|++++|.+...+.+.++++|++|++++|.+.. ++ .+..+++|++
T Consensus 43 l~~L~~L~l~~----~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAG----EKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCS----SCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSE
T ss_pred cccccEEEEeC----Cccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--ch-HHcCCCcCCE
Confidence 46899999976 22344554 77899999999999999883338899999999999998854 23 3789999999
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec--cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhh
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQE 290 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 290 (531)
|++++|.......+.++++|+.|++++|. ..+.. ...+++|++|++++|.......+..+++|+.|++++|.+++-
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~- 192 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI- 192 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc-
Confidence 99999976554446788999999999996 22222 447899999999999822222388999999999999998853
Q ss_pred hhhhhcCCCCCcEEEeccccchhHH-HhcCcccceeccccccchhhh--cccCCCcceeEeecCCcC--ceecCCCCCcE
Q 009616 291 FHPLISKFPLLEDLSIISLETLERI-MISSNRLMHLEVYNCSGLNRI--NVDAPNLVSFDFEDNPIP--IVSTNAPCPLN 365 (531)
Q Consensus 291 ~~~~l~~~~~L~~L~L~~c~~l~~l-~~~~~~L~~L~l~~c~~L~~l--~~~~~nL~sl~~~~~~~p--~~~~~~~~L~~ 365 (531)
.. +..+++|+.|++++|...... ...+++|+.|++.+|. +..+ .-..++|+.+.+.+..+. ..+..+++|+.
T Consensus 193 -~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 269 (347)
T 4fmz_A 193 -SP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKM 269 (347)
T ss_dssp -GG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred -cc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCE
Confidence 22 678999999999997542111 2345678888777653 1111 123456666666555443 33455677777
Q ss_pred EEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 366 VLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 366 L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
|++++ +.+... ..+..+++|+.|+++.|..... .|+ .+..+++|++|+++.|
T Consensus 270 L~l~~-n~l~~~------~~~~~l~~L~~L~L~~n~l~~~--~~~------~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 270 LNVGS-NQISDI------SVLNNLSQLNSLFLNNNQLGNE--DME------VIGGLTNLTTLFLSQN 321 (347)
T ss_dssp EECCS-SCCCCC------GGGGGCTTCSEEECCSSCCCGG--GHH------HHHTCTTCSEEECCSS
T ss_pred EEccC-CccCCC------hhhcCCCCCCEEECcCCcCCCc--Chh------HhhccccCCEEEccCC
Confidence 77764 333331 2246677777777776554332 221 2334567777777776
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=6.5e-19 Score=184.40 Aligned_cols=280 Identities=18% Similarity=0.106 Sum_probs=166.6
Q ss_pred cCCcEEEEeeecCCCccccC-CccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.+++.|+|+. + ....+ |..+..+++|++|+|++|.+.+ +..+.++++|++|+|++|.+..- ....++++++|
T Consensus 32 ~~l~~L~L~~--n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGK--N--RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCS--S--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTC
T ss_pred CCCcEEECCC--C--ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCC
Confidence 3677777764 1 22233 4456677888888888887766 55677788888888888776431 22335677888
Q ss_pred ceEEeeecCCccee--eccccccccEEEEEeec-ccc-ceeeeeCCcccEEEecccc-ccc-eeeccCCCCccEEEEeCC
Q 009616 211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QEL-ESVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLP 284 (531)
Q Consensus 211 e~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l-~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~ 284 (531)
++|+|++|...... .+.++++|+.|++++|. ..+ +.....+++|++|++++|. ... +..+..+++|+.|+++++
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 88888877653332 24467788888888775 222 1222357788888888877 222 334777888888888887
Q ss_pred CCChhhhhhhhcCCCCCcEEEeccccchhHHHh---cCcccceeccccccchhhhc----ccCCCcceeEeecCCcC---
Q 009616 285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMI---SSNRLMHLEVYNCSGLNRIN----VDAPNLVSFDFEDNPIP--- 354 (531)
Q Consensus 285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~----~~~~nL~sl~~~~~~~p--- 354 (531)
.++. .....+.++++|+.|++++|..+..+.. ...+|+.|++.++. +..+. -..++|+.+.+++..+.
T Consensus 187 ~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 187 NINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp CCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred cCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccC
Confidence 7764 3344566778888888887754333221 12356666666542 22211 12345555555554432
Q ss_pred -ceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616 355 -IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS 433 (531)
Q Consensus 355 -~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~ 433 (531)
..+..+++|+.|++++ +.+.... +..+.++++|+.|+++.|.... +|+. .+..+++|++|+|..|.
T Consensus 265 ~~~~~~l~~L~~L~L~~-n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~---~~~~-----~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVG-GQLAVVE----PYAFRGLNYLRVLNVSGNQLTT---LEES-----VFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTSCTTCTTCCEEECCS-SCCSEEC----TTTBTTCTTCCEEECCSSCCSC---CCGG-----GBSCGGGCCEEECCSSC
T ss_pred hhhccccccCCEEECCC-CccceEC----HHHhcCcccCCEEECCCCcCce---eCHh-----HcCCCcccCEEEccCCC
Confidence 3345567777777764 3333221 2234566777777776554332 3321 13345677777777663
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=3.1e-18 Score=182.41 Aligned_cols=75 Identities=13% Similarity=-0.036 Sum_probs=45.6
Q ss_pred hhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC-C
Q 009616 387 GAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE-N 465 (531)
Q Consensus 387 ~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~-~ 465 (531)
.++++|+.|+++.|... . || ....+++|++|+|+.|...+..+ ..+-..+.+++|.+... +
T Consensus 448 ~~l~~L~~L~Ls~N~l~--~-ip-------~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK--T-LP-------DASLFPVLLVMKISRNQLKSVPD--------GIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCTTCCEEECCSSCCS--S-CC-------CGGGCTTCCEEECCSSCCCCCCT--------TGGGGCTTCCEEECCSSCB
T ss_pred ccCChhcEEECCCCccC--c-CC-------CcccCccCCEEecCCCccCCcCH--------HHHhcCcccCEEEecCCCc
Confidence 46778888888766554 2 66 23456889999999884332211 11334567888888544 2
Q ss_pred CCchhhHHHHHHHh
Q 009616 466 WRYRPFVMWFYDHL 479 (531)
Q Consensus 466 ~~~~~~~~~~~~~~ 479 (531)
.+.++..+++..++
T Consensus 510 ~~~~~~~~~l~~~l 523 (549)
T 2z81_A 510 DCSCPRIDYLSRWL 523 (549)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHH
Confidence 24566666665554
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=7.1e-19 Score=189.72 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=127.4
Q ss_pred ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616 157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~ 236 (531)
+..+++|++|++++|.+...+.+..+++|++|++++|.+. .++.+ .+++|++|++++|...+...+..+++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 5667899999999998877347788899999999999882 34443 8899999999999777777777889999999
Q ss_pred EEeec-ccc---ceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616 237 LRFTY-QEL---ESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (531)
Q Consensus 237 l~~~~-~~l---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~ 311 (531)
+++|. ... +.....+++|++|++++|. ...+..+..+++|+.|++++|.+++......+.++++|+.|++++|..
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 99886 222 2233468899999999998 445567888999999999998887644435677889999999998864
Q ss_pred hhHH---HhcCcccceeccccc
Q 009616 312 LERI---MISSNRLMHLEVYNC 330 (531)
Q Consensus 312 l~~l---~~~~~~L~~L~l~~c 330 (531)
.... ....++|+.|++.++
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTC
T ss_pred CccchhhhcCCCCCCEEECCCC
Confidence 2211 122345556655554
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=5.5e-17 Score=169.20 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=24.6
Q ss_pred ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeec
Q 009616 157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYC 218 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c 218 (531)
+..+++|++|++++|.+.+.+.++++++|++|++++|.+.+. +. +..+++|++|++++|
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEEEEE
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEEECCCC
Confidence 344444444444444444411144444444444444444221 11 344444444444444
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=2e-18 Score=179.39 Aligned_cols=273 Identities=15% Similarity=0.071 Sum_probs=166.4
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcC--CCCCCccCEEEeeeEEechHhHHHHHhCCcc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSH--CANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~ 209 (531)
+++++|+++. .......|..+..+++|++|+|++|.+.+ +.. ++++++|++|+|++|.+.+.....+++++++
T Consensus 79 ~~L~~L~Ls~---n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 79 SSLIILKLDY---NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCCEEECTT---CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred ccCCEEeCCC---CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 5899999975 22223347788899999999999999987 333 8889999999999999854333344789999
Q ss_pred cceEEeeecCCcceee--cccc--ccccEEEEEeec-ccccee---------eeeCCcccEEEecccc--ccceeecc--
Q 009616 210 LEDLSFFYCFGLKRLR--ISEA--HKLKSLILRFTY-QELESV---------EIAVPSLQQLELSFSR--VPRLLDVA-- 271 (531)
Q Consensus 210 Le~L~L~~c~~~~~l~--~~~l--~~L~~L~l~~~~-~~l~~~---------~~~~~~L~~L~l~~~~--~~~~~~~~-- 271 (531)
|++|++++|...+... +..+ ++|+.|++++|. ..+... ...+++|++|++++|. +..+..+.
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 9999999997533211 1111 456666666654 111111 1123556666666664 11111111
Q ss_pred -------------------------------------CCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhH
Q 009616 272 -------------------------------------ECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER 314 (531)
Q Consensus 272 -------------------------------------~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~ 314 (531)
..++|+.|++++|.+++ ..+..+.++++|+.|+|++|..-..
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhcccCCCCCEEECCCCccccc
Confidence 12466666666666663 3444556666777777766532110
Q ss_pred HHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccce
Q 009616 315 IMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGE 394 (531)
Q Consensus 315 l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~ 394 (531)
... .+..+++|+.+.++.+.+.. ..|..+..+++|+.|++++ +.+... .+..+.++++|+.
T Consensus 315 ~~~--------~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~-N~l~~~----~~~~~~~l~~L~~ 375 (455)
T 3v47_A 315 DDN--------AFWGLTHLLKLNLSQNFLGS------IDSRMFENLDKLEVLDLSY-NHIRAL----GDQSFLGLPNLKE 375 (455)
T ss_dssp CTT--------TTTTCTTCCEEECCSSCCCE------ECGGGGTTCTTCCEEECCS-SCCCEE----CTTTTTTCTTCCE
T ss_pred Chh--------HhcCcccCCEEECCCCccCC------cChhHhcCcccCCEEECCC-Cccccc----ChhhccccccccE
Confidence 000 11223333444333333311 1235567789999999985 444332 2344678999999
Q ss_pred eEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccC
Q 009616 395 LHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMD 437 (531)
Q Consensus 395 L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 437 (531)
|+++.|.... +|.. .+..+++|++|+|+.|...++
T Consensus 376 L~L~~N~l~~---~~~~-----~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 376 LALDTNQLKS---VPDG-----IFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp EECCSSCCSC---CCTT-----TTTTCTTCCEEECCSSCBCCC
T ss_pred EECCCCcccc---CCHh-----HhccCCcccEEEccCCCcccC
Confidence 9998766543 4521 245689999999999854433
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=5.8e-18 Score=182.56 Aligned_cols=246 Identities=19% Similarity=0.135 Sum_probs=144.2
Q ss_pred ccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee---ccccccc
Q 009616 157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKL 232 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~---~~~l~~L 232 (531)
+..+++|++|++++|.+.. |..+.++++|++|++++|.+... .+..++.+++|++|++++|...+.+. +.++++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 5567778888888777766 66677777888888877776432 23346677788888887776544332 4456777
Q ss_pred cEEEEEeec-ccc---ceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEe
Q 009616 233 KSLILRFTY-QEL---ESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI 306 (531)
Q Consensus 233 ~~L~l~~~~-~~l---~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L 306 (531)
++|++++|. ... +.....+++|++|++++|. ...+..++.+++|+.|++++|.+++......+.++++|+.|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 788777775 221 1122356777777777776 3334566777777777777777765444455667777777777
Q ss_pred ccccchhH---HHhcCcccceeccccccchhhhcccCCCcceeEeecCCc--CceecCCCCCcEEEEEeeccCChhhhhh
Q 009616 307 ISLETLER---IMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI--PIVSTNAPCPLNVLFSNFGDIDTHWYLN 381 (531)
Q Consensus 307 ~~c~~l~~---l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~--p~~~~~~~~L~~L~l~~~~~~~~~~~~~ 381 (531)
++|..... .....++|+.|++.++. +. +..+ +..+..+++|+.|++++ +.+.+.
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----------l~-----~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~---- 491 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNH-----------FP-----KGNIQKTNSLQTLGRLEILVLSF-CDLSSI---- 491 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCB-----------CG-----GGEECSSCGGGGCTTCCEEECTT-SCCCEE----
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCC-----------CC-----ccccccchhhccCCCccEEECCC-CccCcc----
Confidence 77643211 11123444444444332 11 1001 12344567777777764 333322
Q ss_pred HHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616 382 LMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS 433 (531)
Q Consensus 382 l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~ 433 (531)
.+..+.++++|+.|+++.|..... .|+ .+..+..| +|+++.|.
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~--~~~------~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSS--SIE------ALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGG--GGG------GGTTCCSC-EEECCSSC
T ss_pred ChhhhccccCCCEEECCCCccCcC--Chh------HhCccccc-EEECcCCc
Confidence 123345667777777766554433 331 33445666 66666663
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=4.1e-18 Score=178.28 Aligned_cols=292 Identities=16% Similarity=0.038 Sum_probs=208.3
Q ss_pred CccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-
Q 009616 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL- 224 (531)
Q Consensus 148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l- 224 (531)
.....+|..+. +++++|+|++|.+.+ +..+.++++|++|+|++|.+... .+..+.++++|++|+|++|......
T Consensus 21 ~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 21 KRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCc
Confidence 34556777654 689999999999987 56788999999999999987542 2345789999999999998753321
Q ss_pred -eccccccccEEEEEeec-ccc-ceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCC
Q 009616 225 -RISEAHKLKSLILRFTY-QEL-ESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFP 299 (531)
Q Consensus 225 -~~~~l~~L~~L~l~~~~-~~l-~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 299 (531)
.+.++++|++|++++|. ... +.....+++|++|++++|. ...+..+.++++|+.|++++|.++. .....+.+++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~ 176 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLH 176 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccC
Confidence 24578999999999987 222 2233478999999999998 3345578999999999999999984 4456688999
Q ss_pred CCcEEEeccccchhH---HHhcCcccceeccccccchhhhc---ccCCCcceeEeecCCc---C-ceecCCCCCcEEEEE
Q 009616 300 LLEDLSIISLETLER---IMISSNRLMHLEVYNCSGLNRIN---VDAPNLVSFDFEDNPI---P-IVSTNAPCPLNVLFS 369 (531)
Q Consensus 300 ~L~~L~L~~c~~l~~---l~~~~~~L~~L~l~~c~~L~~l~---~~~~nL~sl~~~~~~~---p-~~~~~~~~L~~L~l~ 369 (531)
+|+.|+|+++..-.. ....+++|+.|++.++..+..+. ....+|+.+.+.+..+ | ..+..+++|+.|+++
T Consensus 177 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECC
T ss_pred CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECC
Confidence 999999999753211 12235688899988876554332 2334778888777654 3 356678999999998
Q ss_pred eeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHh
Q 009616 370 NFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDD 449 (531)
Q Consensus 370 ~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~ 449 (531)
+ +.+.... ...+.++++|+.|.++.+..... .| . .+..+++|++|+|+.|...+- +.. .
T Consensus 257 ~-n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~--~~-----~-~~~~l~~L~~L~L~~N~l~~~-~~~-------~ 315 (477)
T 2id5_A 257 Y-NPISTIE----GSMLHELLRLQEIQLVGGQLAVV--EP-----Y-AFRGLNYLRVLNVSGNQLTTL-EES-------V 315 (477)
T ss_dssp S-SCCCEEC----TTSCTTCTTCCEEECCSSCCSEE--CT-----T-TBTTCTTCCEEECCSSCCSCC-CGG-------G
T ss_pred C-CcCCccC----hhhccccccCCEEECCCCccceE--CH-----H-HhcCcccCCEEECCCCcCcee-CHh-------H
Confidence 5 4444322 23457889999999987765543 34 2 456789999999998843211 111 1
Q ss_pred HhhhccccceeecCC
Q 009616 450 LFWIFYPKNLCLSPE 464 (531)
Q Consensus 450 L~~~~~l~~l~l~~~ 464 (531)
+-.++.+++|.+..-
T Consensus 316 ~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 316 FHSVGNLETLILDSN 330 (477)
T ss_dssp BSCGGGCCEEECCSS
T ss_pred cCCCcccCEEEccCC
Confidence 223467888888543
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=1.9e-18 Score=170.56 Aligned_cols=240 Identities=15% Similarity=0.053 Sum_probs=139.6
Q ss_pred cCCcEEEEeeecCCCccc--cCCccccCCCCccEEEecC-CcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCc
Q 009616 134 NGVKELDFEVITDKNSVN--ALPQTIFSAKLLTSLKLFG-CKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECR 208 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~--~lp~~l~~~~~L~~L~L~~-~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~ 208 (531)
.+|++|+++. . .... .+|..+..+++|++|+|++ |.+.+ |..++++++|++|+|++|.+.+. ++..++.++
T Consensus 50 ~~l~~L~L~~--~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSG--L-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEEC--C-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCT
T ss_pred ceEEEEECCC--C-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCC
Confidence 3577777765 2 1112 5777777788888888874 66665 66677788888888888777432 344466777
Q ss_pred ccceEEeeecCCcceee--ccccccccEEEEEeec--cccceeeeeCC-cccEEEecccc--ccceeeccCCCCccEEEE
Q 009616 209 VLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY--QELESVEIAVP-SLQQLELSFSR--VPRLLDVAECPHLRKLVL 281 (531)
Q Consensus 209 ~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~--~~l~~~~~~~~-~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L 281 (531)
+|++|++++|...+.++ +.++++|++|++++|. +.++.....++ +|++|++++|. +..+..++.++ |+.|++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 77777777776543322 3456667777766665 12222223344 66666666665 34444555554 666666
Q ss_pred eCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCC
Q 009616 282 FLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAP 361 (531)
Q Consensus 282 ~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~ 361 (531)
++|.+++ ..+..+.++++|+.|+|++|... +..| .+..++
T Consensus 205 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~--------------------------------------~~~~-~~~~l~ 244 (313)
T 1ogq_A 205 SRNMLEG-DASVLFGSDKNTQKIHLAKNSLA--------------------------------------FDLG-KVGLSK 244 (313)
T ss_dssp CSSEEEE-CCGGGCCTTSCCSEEECCSSEEC--------------------------------------CBGG-GCCCCT
T ss_pred cCCcccC-cCCHHHhcCCCCCEEECCCCcee--------------------------------------eecC-cccccC
Confidence 6666553 23344555666666666654310 0111 123355
Q ss_pred CCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 362 CPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 362 ~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
+|++|+++. +.+.+ .++..+.++++|+.|+++.|...+. +| ....+++|+.+++..|
T Consensus 245 ~L~~L~Ls~-N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~--ip-------~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 245 NLNGLDLRN-NRIYG----TLPQGLTQLKFLHSLNVSFNNLCGE--IP-------QGGNLQRFDVSAYANN 301 (313)
T ss_dssp TCCEEECCS-SCCEE----CCCGGGGGCTTCCEEECCSSEEEEE--CC-------CSTTGGGSCGGGTCSS
T ss_pred CCCEEECcC-CcccC----cCChHHhcCcCCCEEECcCCccccc--CC-------CCccccccChHHhcCC
Confidence 666666663 32222 2233456677777777776666555 55 3456677777777766
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=3.5e-18 Score=185.11 Aligned_cols=300 Identities=10% Similarity=0.064 Sum_probs=207.7
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCc-CCC---CcCCCCC------CccCEEEeeeEEechHhHHH-
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCK-LEQ---PSHCANL------QSLKKLSLDEVYVNDQMVQS- 202 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~---~~~~~~l------~~L~~L~L~~~~~~~~~l~~- 202 (531)
+++++|+++. +.....+|..+.++++|++|+|++|. +.+ |..++.+ ++|++|++++|.++ .++.
T Consensus 249 ~~L~~L~L~~---n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~ 323 (636)
T 4eco_A 249 KDLTDVEVYN---CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVE 323 (636)
T ss_dssp TTCCEEEEEC---CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCH
T ss_pred CCCCEEEecC---CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCch
Confidence 5899999986 33456789999999999999999998 774 5555555 99999999999986 3555
Q ss_pred -HHhCCcccceEEeeecCCcceee-ccccccccEEEEEeec-cccceeeeeCCc-ccEEEecccc-ccceeeccCCC--C
Q 009616 203 -LVRECRVLEDLSFFYCFGLKRLR-ISEAHKLKSLILRFTY-QELESVEIAVPS-LQQLELSFSR-VPRLLDVAECP--H 275 (531)
Q Consensus 203 -~l~~~~~Le~L~L~~c~~~~~l~-~~~l~~L~~L~l~~~~-~~l~~~~~~~~~-L~~L~l~~~~-~~~~~~~~~~~--~ 275 (531)
.++++++|++|++++|...+.++ +..+++|+.|++++|. ..++.....+++ |++|++++|. ...|..++..+ +
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 78999999999999998765553 4467899999999987 434444456788 9999999998 55565666544 8
Q ss_pred ccEEEEeCCCCChhhhhhhhc-------CCCCCcEEEeccccc--hh-HHHhcCcccceeccccccchhhhcccC-----
Q 009616 276 LRKLVLFLPHFNDQEFHPLIS-------KFPLLEDLSIISLET--LE-RIMISSNRLMHLEVYNCSGLNRINVDA----- 340 (531)
Q Consensus 276 L~~L~L~~~~~~~~~~~~~l~-------~~~~L~~L~L~~c~~--l~-~l~~~~~~L~~L~l~~c~~L~~l~~~~----- 340 (531)
|+.|++++|.+++. .+..+. .+++|+.|+|++|.. +. .+....++|+.|++.++. +..+....
T Consensus 404 L~~L~Ls~N~l~~~-~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~ 481 (636)
T 4eco_A 404 MSAIDFSYNEIGSV-DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDEN 481 (636)
T ss_dssp EEEEECCSSCTTTT-TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETT
T ss_pred cCEEECcCCcCCCc-chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccc
Confidence 99999999988853 333344 667899999988753 21 222335778888887643 22222111
Q ss_pred ------CCcceeEeecCCc---Cceec--CCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeee----eeee
Q 009616 341 ------PNLVSFDFEDNPI---PIVST--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY----KQVL 405 (531)
Q Consensus 341 ------~nL~sl~~~~~~~---p~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~----~~~~ 405 (531)
++|+.+.+.+..+ |..+. .+++|+.|++++ +.+.+ ++..+.++++|+.|+++.|. +...
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCS-SCCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCC-CCCCC-----cChhhhcCCCCCEEECCCCcccccCccc
Confidence 1556666555443 54554 788999999985 44443 23445678999999986432 2222
Q ss_pred eeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecC
Q 009616 406 FNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSP 463 (531)
Q Consensus 406 ~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~ 463 (531)
..+|+ .+..+++|++|+|+.|.. +..+.. +. +.+++|.+..
T Consensus 556 ~~~p~------~l~~l~~L~~L~Ls~N~l-~~ip~~--------~~--~~L~~L~Ls~ 596 (636)
T 4eco_A 556 REWPE------GITLCPSLTQLQIGSNDI-RKVNEK--------IT--PNISVLDIKD 596 (636)
T ss_dssp CCCCT------TGGGCSSCCEEECCSSCC-CBCCSC--------CC--TTCCEEECCS
T ss_pred ccChH------HHhcCCCCCEEECCCCcC-CccCHh--------Hh--CcCCEEECcC
Confidence 22662 556678999999998844 222222 11 5678888843
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=5.1e-18 Score=183.00 Aligned_cols=82 Identities=16% Similarity=0.256 Sum_probs=45.4
Q ss_pred cCCcEEEEeeecCCCccccC-CccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
+++++|+++. + ....+ |..+.++++|++|+|++|.+.+ +..++++++|++|++++|.+....++..++++++|
T Consensus 80 ~~L~~L~Ls~--n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 80 HHLSNLILTG--N--PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp TTCCEEECTT--C--CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred hhcCEeECCC--C--cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 3566666653 1 12223 5555666666666666666654 24455666666666666655332234445566666
Q ss_pred ceEEeeecC
Q 009616 211 EDLSFFYCF 219 (531)
Q Consensus 211 e~L~L~~c~ 219 (531)
++|++++|.
T Consensus 156 ~~L~Ls~n~ 164 (606)
T 3vq2_A 156 VHVDLSYNY 164 (606)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCc
Confidence 666666553
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=9.6e-17 Score=167.36 Aligned_cols=288 Identities=14% Similarity=0.136 Sum_probs=186.7
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
+++++|+++. .....++. +..+++|++|++++|.+.+.+.+.++++|++|++++|.+.+ ++. ++.+++|++|
T Consensus 90 ~~L~~L~l~~----n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L 161 (466)
T 1o6v_A 90 TKLVDILMNN----NQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISA-LSGLTSLQQL 161 (466)
T ss_dssp TTCCEEECCS----SCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECC--CGG-GTTCTTCSEE
T ss_pred ccCCEEECCC----CccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCC--Chh-hccCCcccEe
Confidence 5789998875 23344555 78899999999999999884448899999999999999854 222 6789999999
Q ss_pred EeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhh
Q 009616 214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFH 292 (531)
Q Consensus 214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 292 (531)
++.++ ......+.++++|+.|++++|. ..+.. ...+++|++|++++|.......++.+++|+.|++++|.+++-
T Consensus 162 ~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--- 236 (466)
T 1o6v_A 162 SFGNQ-VTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--- 236 (466)
T ss_dssp EEEES-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---
T ss_pred ecCCc-ccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---
Confidence 98643 3333346678889999998886 22222 346788888888888722122367788888888888887752
Q ss_pred hhhcCCCCCcEEEeccccchhHH-HhcCcccceecccccc--chhhhcccCCCcceeEeecCCcC--ceecCCCCCcEEE
Q 009616 293 PLISKFPLLEDLSIISLETLERI-MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVL 367 (531)
Q Consensus 293 ~~l~~~~~L~~L~L~~c~~l~~l-~~~~~~L~~L~l~~c~--~L~~l~~~~~nL~sl~~~~~~~p--~~~~~~~~L~~L~ 367 (531)
..+..+++|+.|++++|..-... ...+++|+.|++.++. .+.. ....++|+.+.+.+..+. ..+..+++|+.|+
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 315 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLT 315 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEE
Confidence 23567788888888887531111 2235677777776642 1111 123355666666555442 2255677888888
Q ss_pred EEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHH
Q 009616 368 FSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILL 447 (531)
Q Consensus 368 l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~ 447 (531)
+++ +.+.+... +..+++|+.|+++.|.... ++ .+..+++|++|+++.|...+. ..
T Consensus 316 L~~-n~l~~~~~------~~~l~~L~~L~l~~n~l~~---~~-------~l~~l~~L~~L~l~~n~l~~~-----~~--- 370 (466)
T 1o6v_A 316 LYF-NNISDISP------VSSLTKLQRLFFYNNKVSD---VS-------SLANLTNINWLSAGHNQISDL-----TP--- 370 (466)
T ss_dssp CCS-SCCSCCGG------GGGCTTCCEEECCSSCCCC---CG-------GGTTCTTCCEEECCSSCCCBC-----GG---
T ss_pred CcC-CcCCCchh------hccCccCCEeECCCCccCC---ch-------hhccCCCCCEEeCCCCccCcc-----ch---
Confidence 875 44333211 4677888888777554332 22 355667788888877633222 11
Q ss_pred HhHhhhccccceeec
Q 009616 448 DDLFWIFYPKNLCLS 462 (531)
Q Consensus 448 ~~L~~~~~l~~l~l~ 462 (531)
+...+.++.|.+.
T Consensus 371 --~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 371 --LANLTRITQLGLN 383 (466)
T ss_dssp --GTTCTTCCEEECC
T ss_pred --hhcCCCCCEEecc
Confidence 3345566777663
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.69 E-value=1.3e-17 Score=179.88 Aligned_cols=274 Identities=18% Similarity=0.175 Sum_probs=194.0
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le 211 (531)
+++++|+++. .....+|..+..+++|++|++++|.+.+ +..+.++++|++|++++|.+........+..+++|+
T Consensus 278 ~~L~~L~l~~----n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 278 SGLQELDLTA----THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCSEEECTT----SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred cCCCEEeccC----CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 4788888875 2345889999999999999999999987 567889999999999999774333333477899999
Q ss_pred eEEeeecCCccee----eccccccccEEEEEeec-c-ccceeeeeCCcccEEEecccc--ccc-eeeccCCCCccEEEEe
Q 009616 212 DLSFFYCFGLKRL----RISEAHKLKSLILRFTY-Q-ELESVEIAVPSLQQLELSFSR--VPR-LLDVAECPHLRKLVLF 282 (531)
Q Consensus 212 ~L~L~~c~~~~~l----~~~~l~~L~~L~l~~~~-~-~l~~~~~~~~~L~~L~l~~~~--~~~-~~~~~~~~~L~~L~L~ 282 (531)
+|++++|...+.. .+.++++|++|++++|. . ..+.....+++|++|++++|. +.. +..+..+++|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 9999999865433 35578999999999996 2 222333468999999999998 332 3348899999999999
Q ss_pred CCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCC
Q 009616 283 LPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPC 362 (531)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~ 362 (531)
+|.+++ ..+..+.++++|+.|++++|......... .-.+..+++|+.+.++.+++.. ..|..+..+++
T Consensus 434 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~ 501 (606)
T 3t6q_A 434 HSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQK-----TNSLQTLGRLEILVLSFCDLSS------IDQHAFTSLKM 501 (606)
T ss_dssp TCCCBT-TCTTTTTTCTTCCEEECTTCBCGGGEECS-----SCGGGGCTTCCEEECTTSCCCE------ECTTTTTTCTT
T ss_pred CCccCC-cCHHHHhCCCCCCEEECCCCCCCcccccc-----chhhccCCCccEEECCCCccCc------cChhhhccccC
Confidence 999874 34566788999999999998632210000 0112334455555555544422 12456678899
Q ss_pred CcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccC
Q 009616 363 PLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMD 437 (531)
Q Consensus 363 L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 437 (531)
|+.|++++ +.+.+. .+..+.++++| .|+++.|..... .| . .+..+++|+.|+++.|....+
T Consensus 502 L~~L~Ls~-N~l~~~----~~~~l~~l~~L-~L~L~~N~l~~~--~~-~-----~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 502 MNHVDLSH-NRLTSS----SIEALSHLKGI-YLNLASNHISII--LP-S-----LLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CCEEECCS-SCCCGG----GGGGGTTCCSC-EEECCSSCCCCC--CG-G-----GHHHHHTSSEEECTTCCEECS
T ss_pred CCEEECCC-CccCcC----ChhHhCccccc-EEECcCCccccc--CH-h-----hcccCCCCCEEeCCCCCcccc
Confidence 99999985 444432 23445677777 777776655432 33 1 234578999999998855444
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=3e-17 Score=163.01 Aligned_cols=148 Identities=22% Similarity=0.263 Sum_probs=118.7
Q ss_pred CCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEE
Q 009616 160 AKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLI 236 (531)
Q Consensus 160 ~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~ 236 (531)
..++++|+|++|.+.. |..++++++|++|+|++|.+. .++..++.+++|++|+|++|... .++ +.++++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 4789999999999988 788889999999999999886 35566789999999999999764 332 55789999999
Q ss_pred EEeec--cccceee---------eeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616 237 LRFTY--QELESVE---------IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304 (531)
Q Consensus 237 l~~~~--~~l~~~~---------~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L 304 (531)
+++|. +.++... ..+++|++|++++|. ...|..++.+++|+.|++++|.+++ ++..+.++++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence 99987 3333222 248899999999988 6666778889999999999998884 33447788899999
Q ss_pred Eeccccch
Q 009616 305 SIISLETL 312 (531)
Q Consensus 305 ~L~~c~~l 312 (531)
+|++|...
T Consensus 235 ~Ls~n~~~ 242 (328)
T 4fcg_A 235 DLRGCTAL 242 (328)
T ss_dssp ECTTCTTC
T ss_pred ECcCCcch
Confidence 99887643
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.3e-17 Score=184.59 Aligned_cols=301 Identities=11% Similarity=0.046 Sum_probs=205.5
Q ss_pred HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCc-CCC---CcCC-------CCCCccCEEEeeeEEechHhHH
Q 009616 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCK-LEQ---PSHC-------ANLQSLKKLSLDEVYVNDQMVQ 201 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~---~~~~-------~~l~~L~~L~L~~~~~~~~~l~ 201 (531)
.++++.|+|+. +.....+|..+.++++|++|+|++|+ +.+ |..+ ..+++|++|+|++|.+. .++
T Consensus 490 L~~L~~L~Ls~---N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip 564 (876)
T 4ecn_A 490 LKDLTDVELYN---CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFP 564 (876)
T ss_dssp CTTCCEEEEES---CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCC
T ss_pred CCCCCEEECcC---CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccC
Confidence 35899999986 33456789999999999999999998 764 4333 34569999999999986 455
Q ss_pred H--HHhCCcccceEEeeecCCccee-eccccccccEEEEEeec-cccceeeeeCCc-ccEEEecccc-ccceeeccCCC-
Q 009616 202 S--LVRECRVLEDLSFFYCFGLKRL-RISEAHKLKSLILRFTY-QELESVEIAVPS-LQQLELSFSR-VPRLLDVAECP- 274 (531)
Q Consensus 202 ~--~l~~~~~Le~L~L~~c~~~~~l-~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~-L~~L~l~~~~-~~~~~~~~~~~- 274 (531)
. .++++++|+.|+|++|... .+ .+.++++|+.|++++|. ..++.....+++ |+.|++++|. ...|..+..++
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~ 643 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCS
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhcccc
Confidence 5 7899999999999999765 43 45578899999999997 444444456788 9999999998 55565666654
Q ss_pred -CccEEEEeCCCCChhhhhhh---hc--CCCCCcEEEeccccc--hh-HHHhcCcccceeccccccchhhhccc---C--
Q 009616 275 -HLRKLVLFLPHFNDQEFHPL---IS--KFPLLEDLSIISLET--LE-RIMISSNRLMHLEVYNCSGLNRINVD---A-- 340 (531)
Q Consensus 275 -~L~~L~L~~~~~~~~~~~~~---l~--~~~~L~~L~L~~c~~--l~-~l~~~~~~L~~L~l~~c~~L~~l~~~---~-- 340 (531)
+|+.|++++|.+++. ++.+ +. .+++|+.|+|++|.. +. .+...+++|+.|++.++. +..+... .
T Consensus 644 ~~L~~L~Ls~N~l~g~-ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKD 721 (876)
T ss_dssp SCEEEEECCSSCTTTT-SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTT
T ss_pred CCCCEEECcCCcCCCc-cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhcccc
Confidence 499999999988753 2221 11 345888999988754 22 222345778888887642 2222111 1
Q ss_pred ------CCcceeEeecCCc---Cceec--CCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeee----eeee
Q 009616 341 ------PNLVSFDFEDNPI---PIVST--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY----KQVL 405 (531)
Q Consensus 341 ------~nL~sl~~~~~~~---p~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~----~~~~ 405 (531)
++|+.+.+.+..+ |..+. .+++|+.|++++ +.+.+ ++..+.++++|+.|+|+.|. +...
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY-NCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCS-SCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCC-CCCCc-----cchhhhcCCCCCEEECCCCCCccccccc
Confidence 1566666655443 55554 788999999985 44443 23446688999999987633 2222
Q ss_pred eeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC
Q 009616 406 FNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE 464 (531)
Q Consensus 406 ~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~ 464 (531)
..+| ..+..+++|++|+|+.|.. +..+.. + .+.++.|.+...
T Consensus 796 ~~ip------~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l---------~~~L~~LdLs~N 837 (876)
T 4ecn_A 796 RQWP------TGITTCPSLIQLQIGSNDI-RKVDEK-L---------TPQLYILDIADN 837 (876)
T ss_dssp CCCC------TTGGGCSSCCEEECCSSCC-CBCCSC-C---------CSSSCEEECCSC
T ss_pred ccCh------HHHhcCCCCCEEECCCCCC-CccCHh-h---------cCCCCEEECCCC
Confidence 2266 2566678999999998844 222222 1 146788888443
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=1.6e-17 Score=172.43 Aligned_cols=251 Identities=15% Similarity=0.065 Sum_probs=109.7
Q ss_pred ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616 157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~ 236 (531)
+..+++|++|++++|.+.+. .++++++|++|++++|.+++ ++ ++.+++|++|++++|...+ +.+.++++|+.|+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~ 154 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELD 154 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEE
T ss_pred cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEE
Confidence 44555555555555555542 14455555555555555532 11 4455555555555554322 3344445555555
Q ss_pred EEeecccccee-eeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhH
Q 009616 237 LRFTYQELESV-EIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER 314 (531)
Q Consensus 237 l~~~~~~l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~ 314 (531)
+++|. ....+ ...+++|++|++++|. ...+ ++.+++|+.|++++|.+++. -+..+++|+.|++++|..-.
T Consensus 155 l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 155 CHLNK-KITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp CTTCS-CCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-
T ss_pred CCCCC-cccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc-
Confidence 55443 11111 1134445555554444 2221 44444444444444444431 13344444444444432110
Q ss_pred H-HhcCcccceeccc----------cccchhhhcccCCCcceeEeecCCcC--ceecCCCCCcEEEEEeeccCChhhhhh
Q 009616 315 I-MISSNRLMHLEVY----------NCSGLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVLFSNFGDIDTHWYLN 381 (531)
Q Consensus 315 l-~~~~~~L~~L~l~----------~c~~L~~l~~~~~nL~sl~~~~~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~~~ 381 (531)
+ ...+++|+.|++. .+++|+.+.+..++|+.+.+.+.... ...+.+++|+.|+++. +...+.....
T Consensus 227 ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~-n~~l~~l~~~ 305 (457)
T 3bz5_A 227 IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTH-NTQLYLLDCQ 305 (457)
T ss_dssp CCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTT-CTTCCEEECT
T ss_pred cCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCC-CcccceeccC
Confidence 0 0112233333322 23444444444555555554443321 2234556677776653 2111110000
Q ss_pred ---HH-HHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616 382 ---LM-EFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS 433 (531)
Q Consensus 382 ---l~-~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~ 433 (531)
+. --++++++|+.|+++.|...+ + .+..+++|+.|+++.|.
T Consensus 306 ~~~L~~L~l~~~~~L~~L~L~~N~l~~---l--------~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 306 AAGITELDLSQNPKLVYLYLNNTELTE---L--------DVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEECTTCCCSC---C--------CCTTCTTCSEEECCSSC
T ss_pred CCcceEechhhcccCCEEECCCCcccc---c--------ccccCCcCcEEECCCCC
Confidence 00 013344566666665444332 1 24556777777777663
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.69 E-value=9.7e-17 Score=170.86 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=70.9
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
++++|+++. + ......|..+..+++|++|+|++|.+.+ +..++++++|++|+|++|.+.+ ..+..++++++|++
T Consensus 27 ~L~~L~Ls~--n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 27 AMKSLDLSF--N-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKY 102 (549)
T ss_dssp TCCEEECCS--S-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCE
T ss_pred CccEEECcC--C-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcE
Confidence 556666554 1 1111223445556666666666666555 3445556666666666665532 12333556666666
Q ss_pred EEeeecCCcc-e--eeccccccccEEEEEeec--cccce-eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCC
Q 009616 213 LSFFYCFGLK-R--LRISEAHKLKSLILRFTY--QELES-VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP 284 (531)
Q Consensus 213 L~L~~c~~~~-~--l~~~~l~~L~~L~l~~~~--~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~ 284 (531)
|++++|...+ . -.+.++++|++|++++|. +.++. ....+++|++|++++|. +..+..++.+++|+.|+++.+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 6666654322 1 123345566666666554 11111 12245555566655555 223333444444444444433
Q ss_pred C
Q 009616 285 H 285 (531)
Q Consensus 285 ~ 285 (531)
.
T Consensus 183 ~ 183 (549)
T 2z81_A 183 E 183 (549)
T ss_dssp B
T ss_pred c
Confidence 3
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=158.59 Aligned_cols=247 Identities=16% Similarity=0.136 Sum_probs=126.6
Q ss_pred CccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEE
Q 009616 162 LLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLIL 237 (531)
Q Consensus 162 ~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l 237 (531)
+|++|++++|.+.+ + ..+.++++|++|++++|.+++. .+..++++++|++|++++|...+... +.++++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 55555555555544 2 2345555555555555544221 12224455555555555554322111 234455555555
Q ss_pred Eeec-cccce--eeeeCCcccEEEecccc--cc-ceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616 238 RFTY-QELES--VEIAVPSLQQLELSFSR--VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (531)
Q Consensus 238 ~~~~-~~l~~--~~~~~~~L~~L~l~~~~--~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~ 311 (531)
++|. ..++. ....+++|++|++++|. .. .+..++++++|+.|++++|.+++ ..+..+.++++|+.|+++++..
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-cCHHHHhccccCCeecCCCCcc
Confidence 5554 22222 22245556666665552 11 12345556666666666666553 2233455566666666665542
Q ss_pred --hhHH-HhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhh
Q 009616 312 --LERI-MISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGA 388 (531)
Q Consensus 312 --l~~l-~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~ 388 (531)
+... ....++|+.|++.++ ++..+.... + ......+.++.+++.. +.+.+.....++..+.+
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n-----------~l~~~~~~~--l-~~~~~~~~l~~l~L~~-~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDT-----------DLDTFHFSE--L-STGETNSLIKKFTFRN-VKITDESLFQVMKLLNQ 275 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESC-----------BCTTCCCC---------CCCCCCEEEEES-CBCCHHHHHHHHHHHHT
T ss_pred ccchhhhhhhcccccEEECCCC-----------ccccccccc--c-ccccccchhhcccccc-ccccCcchhhhHHHHhc
Confidence 1110 111233444433332 111110000 0 0112356678888885 55666555567778899
Q ss_pred ccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616 389 FNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS 433 (531)
Q Consensus 389 l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~ 433 (531)
+++|+.|+++.|... . +|..+ +..+++|++|+|+.|.
T Consensus 276 l~~L~~L~Ls~N~l~--~-i~~~~-----~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 276 ISGLLELEFSRNQLK--S-VPDGI-----FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CTTCCEEECCSSCCC--C-CCTTT-----TTTCTTCCEEECCSSC
T ss_pred ccCCCEEECCCCCCC--c-cCHHH-----HhcCCCCCEEEeeCCC
Confidence 999999999877655 2 67222 3568999999999983
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=3.9e-17 Score=166.26 Aligned_cols=267 Identities=18% Similarity=0.114 Sum_probs=121.2
Q ss_pred CCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee---cccccccc
Q 009616 159 SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLK 233 (531)
Q Consensus 159 ~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~---~~~l~~L~ 233 (531)
.+++|++|+|++|.+.+ +..+.++++|++|+|++|.+... .+..++++++|++|++++|... .++ +.++++|+
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCc
Confidence 34555555555555444 22444555555555555544221 1222344555555555555332 111 22345555
Q ss_pred EEEEEeec-cccc-eeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 234 SLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 234 ~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
+|++++|. ..+. .....+++|++|++++|. ... .++.+++|+.|+++++.++. +...++|+.|+++++.
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNS 216 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc------cCCCCcceEEECCCCe
Confidence 55555543 1111 112234555555555554 111 23444555555555544442 1122345555554432
Q ss_pred chhHHHhcCcccceecccccc--chhhhcccCCCcceeEeecCCc----CceecCCCCCcEEEEEeeccCChhhhhhHHH
Q 009616 311 TLERIMISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPI----PIVSTNAPCPLNVLFSNFGDIDTHWYLNLME 384 (531)
Q Consensus 311 ~l~~l~~~~~~L~~L~l~~c~--~L~~l~~~~~nL~sl~~~~~~~----p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 384 (531)
.-..-....++|+.|++.++. ....+ -..++|+.+.+.+..+ |..+..+++|+.|++++ +.+... +.
T Consensus 217 l~~~~~~~~~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~-----~~ 289 (390)
T 3o6n_A 217 INVVRGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVAL-----NL 289 (390)
T ss_dssp CCEEECCCCSSCCEEECCSSCCCCCGGG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEE-----EC
T ss_pred eeeccccccccccEEECCCCCCcccHHH-cCCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCccc-----Cc
Confidence 110000011233333333321 00000 1123333333333322 34566778888888875 433331 11
Q ss_pred HHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeec
Q 009616 385 FIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLS 462 (531)
Q Consensus 385 ~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~ 462 (531)
....+++|+.|+++.|... . +|+ .+..+++|++|++..|... .. .+-..+.+++|.+.
T Consensus 290 ~~~~l~~L~~L~L~~n~l~--~-~~~------~~~~l~~L~~L~L~~N~i~----~~-------~~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHLL--H-VER------NQPQFDRLENLYLDHNSIV----TL-------KLSTHHTLKNLTLS 347 (390)
T ss_dssp SSSCCTTCCEEECCSSCCC--C-CGG------GHHHHTTCSEEECCSSCCC----CC-------CCCTTCCCSEEECC
T ss_pred ccCCCCCCCEEECCCCcce--e-cCc------cccccCcCCEEECCCCccc----ee-------CchhhccCCEEEcC
Confidence 2256778888888766543 2 552 3445678888888877321 11 12334567777773
No 30
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=1.5e-17 Score=173.13 Aligned_cols=323 Identities=16% Similarity=0.118 Sum_probs=194.4
Q ss_pred HHHcCCcEEEEeeecCCCcc---ccCCccccCCCCccEEEecCCcCCC--CcC-CCCCC----ccCEEEeeeEEech---
Q 009616 131 AMENGVKELDFEVITDKNSV---NALPQTIFSAKLLTSLKLFGCKLEQ--PSH-CANLQ----SLKKLSLDEVYVND--- 197 (531)
Q Consensus 131 ~~~~~l~~L~L~~~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~l~~--~~~-~~~l~----~L~~L~L~~~~~~~--- 197 (531)
...+++++|+++. +.... ..++..+..+++|++|+|++|.+.. +.. ...++ +|++|+|++|.+++
T Consensus 25 ~~~~~L~~L~L~~--~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 25 PLLQQCQVVRLDD--CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHTTCSEEEEES--SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred hhcCCccEEEccC--CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 3446888888876 22211 1456667778888888888887754 211 12344 68888888888754
Q ss_pred HhHHHHHhCCcccceEEeeecCCcce----ee---ccccccccEEEEEeec-cc-----cceeeeeCCcccEEEecccc-
Q 009616 198 QMVQSLVRECRVLEDLSFFYCFGLKR----LR---ISEAHKLKSLILRFTY-QE-----LESVEIAVPSLQQLELSFSR- 263 (531)
Q Consensus 198 ~~l~~~l~~~~~Le~L~L~~c~~~~~----l~---~~~l~~L~~L~l~~~~-~~-----l~~~~~~~~~L~~L~l~~~~- 263 (531)
..++..+..+++|++|++++|..... +. ....++|++|++++|. .. +......+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 24566678888888888888874221 00 1123578888888876 11 12222356888888888887
Q ss_pred cc-ceeecc-----CCCCccEEEEeCCCCChhh---hhhhhcCCCCCcEEEeccccch----hHH----HhcCcccceec
Q 009616 264 VP-RLLDVA-----ECPHLRKLVLFLPHFNDQE---FHPLISKFPLLEDLSIISLETL----ERI----MISSNRLMHLE 326 (531)
Q Consensus 264 ~~-~~~~~~-----~~~~L~~L~L~~~~~~~~~---~~~~l~~~~~L~~L~L~~c~~l----~~l----~~~~~~L~~L~ 326 (531)
.. ....+. ..++|+.|+++++.+++.. +...+..+++|+.|++++|..- ..+ ....++|++|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 11 111121 3568888888888877642 4555667788888888887431 111 11356788888
Q ss_pred cccccchhh-----hc---ccCCCcceeEeecCCcC----ceec-----CCCCCcEEEEEeeccCChhhhhhHHHHHhhc
Q 009616 327 VYNCSGLNR-----IN---VDAPNLVSFDFEDNPIP----IVST-----NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAF 389 (531)
Q Consensus 327 l~~c~~L~~-----l~---~~~~nL~sl~~~~~~~p----~~~~-----~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l 389 (531)
+.+|. +.. +. -..++|+.+.+.+..+. ..+. +.++|+.|++++ +.+.......++..+..+
T Consensus 263 L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 263 IWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS-CSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp CTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHHHHHHHHHHC
T ss_pred CcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC-CCCchHHHHHHHHHHhhC
Confidence 87762 322 11 12567777777766542 1111 235888888875 555555455566777788
Q ss_pred cccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC
Q 009616 390 NQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE 464 (531)
Q Consensus 390 ~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~ 464 (531)
++|+.|+++.|...... +..+... -....++|++|+|+.| .........+...+-.+++++.|.+...
T Consensus 341 ~~L~~L~Ls~n~i~~~~--~~~l~~~-l~~~~~~L~~L~L~~n----~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAG--VRELCQG-LGQPGSVLRVLWLADC----DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp SSCCEEECCSSBCHHHH--HHHHHHH-HTSTTCCCCEEECTTS----CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CCccEEEccCCcccccc--HHHHHHH-HcCCCCceEEEECCCC----CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 88888888766544321 1111111 0112467888888877 2333334455566666777888887443
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=173.16 Aligned_cols=192 Identities=16% Similarity=0.121 Sum_probs=114.0
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcC--CCCCCccCEEEeeeEEechHhHHHHHhCCcc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSH--CANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~ 209 (531)
++++.|+|+. .......|..+.++++|++|+|++|.+.+ +.. ++++++|++|+|++|.+.+..++..++++++
T Consensus 73 ~~L~~L~Ls~---N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 73 PNLRILDLGS---SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp TTCCEEECTT---CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred CCCCEEECCC---CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 3677777764 12223346677777888888888887765 333 6778888888888877744333344677788
Q ss_pred cceEEeeecCCcce---------------ee-------------ccccc------cccEEEEEeec--cccc--------
Q 009616 210 LEDLSFFYCFGLKR---------------LR-------------ISEAH------KLKSLILRFTY--QELE-------- 245 (531)
Q Consensus 210 Le~L~L~~c~~~~~---------------l~-------------~~~l~------~L~~L~l~~~~--~~l~-------- 245 (531)
|++|+|++|...+. +. +..++ +|+.|++++|. ....
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 88888877753111 00 01112 26666666653 0000
Q ss_pred -----eeee-------------------------eCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhh
Q 009616 246 -----SVEI-------------------------AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHP 293 (531)
Q Consensus 246 -----~~~~-------------------------~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 293 (531)
.+.. ..++|+.|++++|. ...+..++.+++|+.|+|++|.+++ ..+.
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~ 308 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADE 308 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTT
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChH
Confidence 0000 02567778887776 3334567788888888888888874 3344
Q ss_pred hhcCCCCCcEEEeccccchh---HHHhcCcccceecccc
Q 009616 294 LISKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYN 329 (531)
Q Consensus 294 ~l~~~~~L~~L~L~~c~~l~---~l~~~~~~L~~L~l~~ 329 (531)
.+.++++|+.|+|++|..-. ......++|+.|++.+
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 56778888888888774311 1112235666666654
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=6.7e-17 Score=172.84 Aligned_cols=249 Identities=13% Similarity=0.112 Sum_probs=154.4
Q ss_pred CCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeecccccc
Q 009616 153 LPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHK 231 (531)
Q Consensus 153 lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~ 231 (531)
+|..+..+++|++|++++|.+.. |..+..+ +|++|++++|.+.. ++. ..+++|++|++.+|..........+++
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCccccccccccCCC
Confidence 45556667788888888877766 6666666 88888888777642 222 467788888888777655555556778
Q ss_pred ccEEEEEeec-ccc---ceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEe
Q 009616 232 LKSLILRFTY-QEL---ESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI 306 (531)
Q Consensus 232 L~~L~l~~~~-~~l---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L 306 (531)
|+.|++++|. ... +.....+++|++|++++|. ...+..+..+++|+.|++++|.+++......+.++++|+.|++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 8888887775 221 1122357788888888877 3344447778888888887777765433345667788888888
Q ss_pred ccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHH
Q 009616 307 ISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFI 386 (531)
Q Consensus 307 ~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l 386 (531)
++|......... +.++++|+.+.++.+.+ .++.+|..+..+++|+.|++++ +.+.+. .+..+
T Consensus 429 ~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l-----~~~~~p~~~~~l~~L~~L~l~~-n~l~~~----~~~~~ 490 (570)
T 2z63_A 429 SHTHTRVAFNGI--------FNGLSSLEVLKMAGNSF-----QENFLPDIFTELRNLTFLDLSQ-CQLEQL----SPTAF 490 (570)
T ss_dssp TTSCCEECCTTT--------TTTCTTCCEEECTTCEE-----GGGEECSCCTTCTTCCEEECTT-SCCCEE----CTTTT
T ss_pred cCCcccccchhh--------hhcCCcCcEEECcCCcC-----ccccchhhhhcccCCCEEECCC-CccccC----Chhhh
Confidence 776432111100 11223333333333222 1123455666788889998874 333332 22345
Q ss_pred hhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 387 GAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 387 ~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
.++++|+.|+++.|.... +|+ . .+..+++|++|+++.|
T Consensus 491 ~~l~~L~~L~l~~n~l~~---~~~----~-~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKS---VPD----G-IFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTCTTCCEEECCSSCCSC---CCT----T-TTTTCTTCCEEECCSS
T ss_pred hcccCCCEEeCCCCcCCC---CCH----H-HhhcccCCcEEEecCC
Confidence 678888888888665443 331 1 3556788888888888
No 33
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=1.5e-17 Score=173.19 Aligned_cols=316 Identities=16% Similarity=0.083 Sum_probs=187.4
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC------CcCCCCCCccCEEEeeeEEechHhHHHHHhCCc
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECR 208 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~ 208 (531)
.+++|+++. .......+...+..+++|++|+|++|.+.. +..+..+++|++|+|++|.+++..+..+...++
T Consensus 4 ~l~~L~Ls~--~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 4 DIQSLDIQC--EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEES--CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred cceehhhhh--cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 567788865 222222233335568899999999998874 344567899999999999987666777766676
Q ss_pred ----ccceEEeeecCCcc----e--eeccccccccEEEEEeec-c--ccceee----eeCCcccEEEecccc-cc-----
Q 009616 209 ----VLEDLSFFYCFGLK----R--LRISEAHKLKSLILRFTY-Q--ELESVE----IAVPSLQQLELSFSR-VP----- 265 (531)
Q Consensus 209 ----~Le~L~L~~c~~~~----~--l~~~~l~~L~~L~l~~~~-~--~l~~~~----~~~~~L~~L~l~~~~-~~----- 265 (531)
+|++|+|++|.... . -.+.++++|++|++++|. . ....+. ...++|++|++++|. ..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999997542 1 224567899999999886 1 111111 124679999999997 21
Q ss_pred ceeeccCCCCccEEEEeCCCCChhhhhhhhc----CCCCCcEEEeccccch-------hHHHhcCcccceeccccccchh
Q 009616 266 RLLDVAECPHLRKLVLFLPHFNDQEFHPLIS----KFPLLEDLSIISLETL-------ERIMISSNRLMHLEVYNCSGLN 334 (531)
Q Consensus 266 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~----~~~~L~~L~L~~c~~l-------~~l~~~~~~L~~L~l~~c~~L~ 334 (531)
.+..+..+++|+.|++++|.+++..+..+.. ..++|+.|++++|..- ......+++|++|++.++. +.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CC
Confidence 2345667899999999999987654443332 4669999999998531 2222345788888888763 32
Q ss_pred hh---------cccCCCcceeEeecCCcC--------ceecCCCCCcEEEEEeeccCChhhhhhHHHHHh-hccccceeE
Q 009616 335 RI---------NVDAPNLVSFDFEDNPIP--------IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIG-AFNQIGELH 396 (531)
Q Consensus 335 ~l---------~~~~~nL~sl~~~~~~~p--------~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~-~l~~L~~L~ 396 (531)
.. .-..++|+.+.+.+..+. ..+..+++|+.|++++ +.+.......+...+. +.++|+.|+
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHHHHHHhccCCccceeeE
Confidence 11 112456666666655442 1222366677777764 3332222222222221 225677776
Q ss_pred EEeeeeeeee--eeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhh-hccccceeecCC
Q 009616 397 LSLNYKQVLF--NIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFW-IFYPKNLCLSPE 464 (531)
Q Consensus 397 L~~~~~~~~~--~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~-~~~l~~l~l~~~ 464 (531)
++.+...... .+|. .+..+++|++|+++.|. ........+...+-. .+.+++|.+...
T Consensus 320 L~~n~l~~~~~~~l~~------~l~~~~~L~~L~Ls~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSS------VLAQNRFLLELQISNNR----LEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp CTTSCCBGGGHHHHHH------HHHHCSSCCEEECCSSB----CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cCCCCCchHHHHHHHH------HHhhCCCccEEEccCCc----cccccHHHHHHHHcCCCCceEEEECCCC
Confidence 6655433221 0121 12334667777777662 112222223333322 345677776443
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=178.41 Aligned_cols=281 Identities=13% Similarity=0.044 Sum_probs=147.5
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.++++|+|+. + ......|..+.++++|++|+|++|...+ +..+.++++|++|+|++|.+... .+..++++++|
T Consensus 24 ~~l~~LdLs~--N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSF--N-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHL 99 (844)
T ss_dssp TTCCEEEEES--C-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSC
T ss_pred CCcCEEECCC--C-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCccc
Confidence 3677777765 2 1222235556667777777777774443 44566777777777777766321 23345667777
Q ss_pred ceEEeeecCCccee----eccccccccEEEEEeec-ccc--ceeeeeCCcccEEEecccc--ccceeeccCC--CCccEE
Q 009616 211 EDLSFFYCFGLKRL----RISEAHKLKSLILRFTY-QEL--ESVEIAVPSLQQLELSFSR--VPRLLDVAEC--PHLRKL 279 (531)
Q Consensus 211 e~L~L~~c~~~~~l----~~~~l~~L~~L~l~~~~-~~l--~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~--~~L~~L 279 (531)
++|+|++|...+.. .+.++++|+.|++++|. ... .....++++|++|++++|. ...+..++.+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 77777776554321 14456777777777765 221 1223356777777777765 3333444444 666667
Q ss_pred EEeCCCCChhhhhhhhcCCCC------CcEEEeccccchhH----HHh--------------------------------
Q 009616 280 VLFLPHFNDQEFHPLISKFPL------LEDLSIISLETLER----IMI-------------------------------- 317 (531)
Q Consensus 280 ~L~~~~~~~~~~~~~l~~~~~------L~~L~L~~c~~l~~----l~~-------------------------------- 317 (531)
++++|.+++... ..+..+++ |+.|++++|..-.. +..
T Consensus 180 ~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 180 SLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp EECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred ECCCCccccccc-cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 776666654222 11223332 66666666521100 000
Q ss_pred -----cCcccceeccccccchhhh----cccCCCcceeEeecCCc----CceecCCCCCcEEEEEeeccCChhhhhhHHH
Q 009616 318 -----SSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPI----PIVSTNAPCPLNVLFSNFGDIDTHWYLNLME 384 (531)
Q Consensus 318 -----~~~~L~~L~l~~c~~L~~l----~~~~~nL~sl~~~~~~~----p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 384 (531)
..++|+.|++.++. +..+ --..++|+.+.+.+..+ |..+..+++|+.|+++. +.+.... +.
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~----~~ 332 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGELY----SS 332 (844)
T ss_dssp TTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES-CCCSCCC----SC
T ss_pred hhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC-CCCCccC----HH
Confidence 01344444444321 1111 01224455555555443 23445566777777764 3332211 12
Q ss_pred HHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616 385 FIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS 433 (531)
Q Consensus 385 ~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~ 433 (531)
.+.++++|+.|+++.|.... +++ . .+..+++|++|+|+.|.
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~---~~~----~-~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAI---IQD----Q-TFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCC---CCS----S-CSCSCCCCCEEEEETCC
T ss_pred HhcCCCCCCEEECCCCCCCc---cCh----h-hhcCCCCCCEEECCCCC
Confidence 34556677777666554322 221 1 35567888899988774
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=8.2e-16 Score=164.23 Aligned_cols=143 Identities=14% Similarity=0.053 Sum_probs=76.6
Q ss_pred cCCCCCcEEEeccccchhHHH---hcCcccceeccccccchhhh------cccCCCcceeEeecCCc----C-ceecCCC
Q 009616 296 SKFPLLEDLSIISLETLERIM---ISSNRLMHLEVYNCSGLNRI------NVDAPNLVSFDFEDNPI----P-IVSTNAP 361 (531)
Q Consensus 296 ~~~~~L~~L~L~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~l------~~~~~nL~sl~~~~~~~----p-~~~~~~~ 361 (531)
..+++|+.|++++|..-..+. ...++|+.|++.++. +..+ .-..++|+.+.+.+..+ | ..+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 455666666666654322111 123455666655432 2111 11234555555544432 3 2355678
Q ss_pred CCcEEEEEeeccCChhhhhhHHHHHhhc-cccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCc
Q 009616 362 CPLNVLFSNFGDIDTHWYLNLMEFIGAF-NQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVP 440 (531)
Q Consensus 362 ~L~~L~l~~~~~~~~~~~~~l~~~l~~l-~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 440 (531)
+|+.|++++ +.+.+. .+..+ ++|+.|+++.|... . ||+ .+..+++|++|+|+.|.... .+.
T Consensus 429 ~L~~L~l~~-n~l~~~-------~~~~l~~~L~~L~L~~N~l~--~-ip~------~~~~l~~L~~L~L~~N~l~~-l~~ 490 (562)
T 3a79_B 429 SILVLNLSS-NMLTGS-------VFRCLPPKVKVLDLHNNRIM--S-IPK------DVTHLQALQELNVASNQLKS-VPD 490 (562)
T ss_dssp TCCEEECCS-SCCCGG-------GGSSCCTTCSEEECCSSCCC--C-CCT------TTTSSCCCSEEECCSSCCCC-CCT
T ss_pred cCCEEECCC-CCCCcc-------hhhhhcCcCCEEECCCCcCc--c-cCh------hhcCCCCCCEEECCCCCCCC-CCH
Confidence 899999985 444332 22334 58888888866544 3 772 44567889999998874321 111
Q ss_pred hhHHHHHHhHhhhccccceeecCC
Q 009616 441 SEYEILLDDLFWIFYPKNLCLSPE 464 (531)
Q Consensus 441 ~~~~~l~~~L~~~~~l~~l~l~~~ 464 (531)
. .+-..+.++.|.+..-
T Consensus 491 ~-------~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 491 G-------VFDRLTSLQYIWLHDN 507 (562)
T ss_dssp T-------STTTCTTCCCEECCSC
T ss_pred H-------HHhcCCCCCEEEecCC
Confidence 1 1334456778877543
No 36
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.4e-16 Score=171.29 Aligned_cols=310 Identities=17% Similarity=0.164 Sum_probs=189.4
Q ss_pred HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--C----cCCCCCCccCEEEeeeEE--echHhHHHHH
Q 009616 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--P----SHCANLQSLKKLSLDEVY--VNDQMVQSLV 204 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~L~~~~--~~~~~l~~~l 204 (531)
.+++++|++.... ......++.....|++|++|+|++|.+.+ + .....+++|++|+++++. ++...+..++
T Consensus 129 ~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 129 FKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp CTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred CCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 3588888887510 11122244445578999999999998654 1 223367899999999886 5666788888
Q ss_pred hCCcccceEEeeecCCcceee--ccccccccEEEEEeec--------------------------------cccceeeee
Q 009616 205 RECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY--------------------------------QELESVEIA 250 (531)
Q Consensus 205 ~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~--------------------------------~~l~~~~~~ 250 (531)
.+|++|++|++.+|..++.+. +.++++|+.|++..+. ..++.+...
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 889999999999885443321 2245666666644331 112222225
Q ss_pred CCcccEEEecccc-c--cceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecc--------ccch-----hH
Q 009616 251 VPSLQQLELSFSR-V--PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIIS--------LETL-----ER 314 (531)
Q Consensus 251 ~~~L~~L~l~~~~-~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~--------c~~l-----~~ 314 (531)
+++|++|++++|. . .....+..+++|+.|++.++ +++..+..+...+++|+.|++.+ |..+ ..
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 7889999999887 1 12223568899999999877 66666667777789999999843 3332 23
Q ss_pred HHhcCcccceeccccccchh-----hhcccCCCcceeEee--c----CCcC---------ceecCCCCCcEEEEEeeccC
Q 009616 315 IMISSNRLMHLEVYNCSGLN-----RINVDAPNLVSFDFE--D----NPIP---------IVSTNAPCPLNVLFSNFGDI 374 (531)
Q Consensus 315 l~~~~~~L~~L~l~~c~~L~-----~l~~~~~nL~sl~~~--~----~~~p---------~~~~~~~~L~~L~l~~~~~~ 374 (531)
+...+++|+.|.+ .|.++. .+.-..++|+.+.+. + ..+. ..+..+++|+.|+++ ...
T Consensus 367 l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~--~~l 443 (594)
T 2p1m_B 367 VSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS--GLL 443 (594)
T ss_dssp HHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC--SSC
T ss_pred HHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec--Ccc
Confidence 3334678888844 444442 222245778877776 3 1111 113356788888886 222
Q ss_pred ChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhc
Q 009616 375 DTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIF 454 (531)
Q Consensus 375 ~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~ 454 (531)
.. ..+..+...+++|+.|+++.+...... ++ .+ ...+++|++|+|+.|. .. -.++....-.++
T Consensus 444 ~~---~~~~~l~~~~~~L~~L~L~~~~i~~~~-~~-~l-----~~~~~~L~~L~L~~n~----~~---~~~~~~~~~~l~ 506 (594)
T 2p1m_B 444 TD---KVFEYIGTYAKKMEMLSVAFAGDSDLG-MH-HV-----LSGCDSLRKLEIRDCP----FG---DKALLANASKLE 506 (594)
T ss_dssp CH---HHHHHHHHHCTTCCEEEEESCCSSHHH-HH-HH-----HHHCTTCCEEEEESCS----CC---HHHHHHTGGGGG
T ss_pred cH---HHHHHHHHhchhccEeeccCCCCcHHH-HH-HH-----HhcCCCcCEEECcCCC----Cc---HHHHHHHHHhCC
Confidence 22 223334445788888888876644332 22 01 1336788888888772 21 222333334456
Q ss_pred cccceeecCC
Q 009616 455 YPKNLCLSPE 464 (531)
Q Consensus 455 ~l~~l~l~~~ 464 (531)
++++|.+..+
T Consensus 507 ~L~~L~l~~~ 516 (594)
T 2p1m_B 507 TMRSLWMSSC 516 (594)
T ss_dssp GSSEEEEESS
T ss_pred CCCEEeeeCC
Confidence 7888888655
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=167.53 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=74.5
Q ss_pred cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.++++|+++. + ....++ ..+..+++|++|+|++|.+.+ |..++++++|++|+|++|.+.. ++.. .+++|
T Consensus 21 ~~L~~L~Ls~--n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQ--N--YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCS--S--CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCC
T ss_pred ccccEEECCC--C--cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCc
Confidence 5677777764 1 223333 456677777777777777766 4566777777777777776642 3322 67777
Q ss_pred ceEEeeecCCcc-ee--eccccccccEEEEEeeccccceeeeeCCcc--cEEEecccc
Q 009616 211 EDLSFFYCFGLK-RL--RISEAHKLKSLILRFTYQELESVEIAVPSL--QQLELSFSR 263 (531)
Q Consensus 211 e~L~L~~c~~~~-~l--~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L--~~L~l~~~~ 263 (531)
++|++++|...+ .+ .+.++++|++|++++|. --......+++| +.|++++|.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECT
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcc-cchhhccccccceeeEEEeeccc
Confidence 777777776543 12 34566777777777775 111112245566 777777664
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=163.94 Aligned_cols=296 Identities=13% Similarity=0.053 Sum_probs=153.7
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.++++|+++. + ....+|.. .+++|++|+|++|.+.+ |..++++++|++|++++|.+.+.. +..++.|
T Consensus 69 ~~L~~L~Ls~--N--~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L 138 (520)
T 2z7x_B 69 QELEYLDLSH--N--KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHL 138 (520)
T ss_dssp TTCCEEECCS--S--CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTS
T ss_pred cCCCEEecCC--C--ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh----ccccccc
Confidence 4677777764 2 22356655 66777777777777654 456677777777777777764422 4455666
Q ss_pred --ceEEeeecCC--cce-------e---------------------eccccccccEEEEEee------------------
Q 009616 211 --EDLSFFYCFG--LKR-------L---------------------RISEAHKLKSLILRFT------------------ 240 (531)
Q Consensus 211 --e~L~L~~c~~--~~~-------l---------------------~~~~l~~L~~L~l~~~------------------ 240 (531)
++|++++|.. .+. + .+.++++|+.|++++|
T Consensus 139 ~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 218 (520)
T 2z7x_B 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218 (520)
T ss_dssp CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGG
T ss_pred eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcc
Confidence 7777777654 110 0 0111333333333332
Q ss_pred ------------c-c--cccee--eeeCCcccEEEecccc--ccceeec-----cCCCCccEEEEeCCCCChh--hhhhh
Q 009616 241 ------------Y-Q--ELESV--EIAVPSLQQLELSFSR--VPRLLDV-----AECPHLRKLVLFLPHFNDQ--EFHPL 294 (531)
Q Consensus 241 ------------~-~--~l~~~--~~~~~~L~~L~l~~~~--~~~~~~~-----~~~~~L~~L~L~~~~~~~~--~~~~~ 294 (531)
. . .+..+ ....++|++|++++|. +..|..+ +.+++|+.++++++.+... .+...
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~ 298 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHH
T ss_pred ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcc
Confidence 1 0 00000 0012366666666665 3444444 5555555555544443110 00000
Q ss_pred ---------------------hcCCCCCcEEEeccccchhHH---HhcCcccceecccccc--chhhh---cccCCCcce
Q 009616 295 ---------------------ISKFPLLEDLSIISLETLERI---MISSNRLMHLEVYNCS--GLNRI---NVDAPNLVS 345 (531)
Q Consensus 295 ---------------------l~~~~~L~~L~L~~c~~l~~l---~~~~~~L~~L~l~~c~--~L~~l---~~~~~nL~s 345 (531)
...+++|+.|++++|..-..+ ....++|+.|++.++. .+..+ .-..++|+.
T Consensus 299 ~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred cccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 146677777777776432211 1234566677666543 11111 123456666
Q ss_pred eEeecCCc----Cc-eecCCCCCcEEEEEeeccCChhhhhhHHHHHhhc-cccceeEEEeeeeeeeeeeccccccCCCCC
Q 009616 346 FDFEDNPI----PI-VSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAF-NQIGELHLSLNYKQVLFNIDEFRSCHPSLP 419 (531)
Q Consensus 346 l~~~~~~~----p~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l-~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~ 419 (531)
+.+++..+ |. .+..+++|+.|++++ +.+.+.. +..+ ++|+.|+++.|... . +|+. +.
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~-------~~~l~~~L~~L~Ls~N~l~--~-ip~~------~~ 441 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSS-NILTDTI-------FRCLPPRIKVLDLHSNKIK--S-IPKQ------VV 441 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCS-SCCCGGG-------GGSCCTTCCEEECCSSCCC--C-CCGG------GG
T ss_pred EECCCCcCCcccccchhccCccCCEEECcC-CCCCcch-------hhhhcccCCEEECCCCccc--c-cchh------hh
Confidence 66655443 32 245577888888875 4443322 2223 68888888766554 2 6733 33
Q ss_pred CCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC
Q 009616 420 LQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE 464 (531)
Q Consensus 420 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~ 464 (531)
.+++|++|+|+.|... ..+.. .+-..+++++|.+..-
T Consensus 442 ~l~~L~~L~L~~N~l~-~l~~~-------~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 442 KLEALQELNVASNQLK-SVPDG-------IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp GCTTCCEEECCSSCCC-CCCTT-------TTTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCcCC-ccCHH-------HhccCCcccEEECcCC
Confidence 5678888888877432 11111 1233456778877543
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=1.2e-16 Score=165.99 Aligned_cols=296 Identities=18% Similarity=0.133 Sum_probs=199.2
Q ss_pred HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.+++++|+++. + ....+| .+..+++|++|+|++|.+.+.+ ++.+++|++|++++|.+++. + ++++++|++
T Consensus 41 l~~L~~L~Ls~--n--~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHN--S--SITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCS--S--CCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCE
T ss_pred cCCCCEEEccC--C--CcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee--e--cCCCCcCCE
Confidence 46899999976 2 233456 6888999999999999998832 78899999999999998553 2 788999999
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhh
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 291 (531)
|++++|...+ +++..+++|+.|++++|. ..++ ...+++|++|++++|.......++.+++|+.|++++|.+++ +
T Consensus 111 L~L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l 185 (457)
T 3bz5_A 111 LNCDTNKLTK-LDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--L 185 (457)
T ss_dssp EECCSSCCSC-CCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--C
T ss_pred EECCCCcCCe-ecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--e
Confidence 9999996543 568889999999999997 3331 33689999999999962222368899999999999999986 2
Q ss_pred hhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcc-cCCCcceeEeecCCcC-ceecCCCCCcEEEEE
Q 009616 292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINV-DAPNLVSFDFEDNPIP-IVSTNAPCPLNVLFS 369 (531)
Q Consensus 292 ~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~-~~~nL~sl~~~~~~~p-~~~~~~~~L~~L~l~ 369 (531)
+ +..+++|+.|++++|..-..-...+++|+.|++.++. +..+.+ ..++|+.+.+.+..+. .....+++|+.++++
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI 262 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred c--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence 2 6789999999999875321111224567777666542 222222 2245555555554442 223345556655543
Q ss_pred eeccCC------hhhhhhHHHHHhhccccceeEEEeeeeeeeeeecc---ccccCCCCCCCcccceEEEEEeeeccCCCc
Q 009616 370 NFGDID------THWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDE---FRSCHPSLPLQVESLSLFMESFSLYMDVVP 440 (531)
Q Consensus 370 ~~~~~~------~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~---~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 440 (531)
. +... +...+.++ ..++++|+.|+++.|...+. +|. .+... .+...++|++|+++.|...+
T Consensus 263 ~-n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~--l~~~~~~L~~L-~l~~~~~L~~L~L~~N~l~~---- 332 (457)
T 3bz5_A 263 Q-TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL--LDCQAAGITEL-DLSQNPKLVYLYLNNTELTE---- 332 (457)
T ss_dssp T-CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE--EECTTCCCSCC-CCTTCTTCCEEECTTCCCSC----
T ss_pred C-CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccce--eccCCCcceEe-chhhcccCCEEECCCCcccc----
Confidence 2 1110 11111111 35678899988887765554 452 22233 45667889999998884322
Q ss_pred hhHHHHHHhHhhhccccceeecC
Q 009616 441 SEYEILLDDLFWIFYPKNLCLSP 463 (531)
Q Consensus 441 ~~~~~l~~~L~~~~~l~~l~l~~ 463 (531)
+ .+-.++.+++|.+..
T Consensus 333 -----l--~l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 333 -----L--DVSHNTKLKSLSCVN 348 (457)
T ss_dssp -----C--CCTTCTTCSEEECCS
T ss_pred -----c--ccccCCcCcEEECCC
Confidence 1 144566788888743
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=9.9e-17 Score=172.53 Aligned_cols=289 Identities=18% Similarity=0.128 Sum_probs=146.0
Q ss_pred CCcEEEEeeecCCCccccCCccc-cCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616 135 GVKELDFEVITDKNSVNALPQTI-FSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le 211 (531)
+++.+++.. .....+|..+ ..+++|++|+|++|.+.+ +..++++++|++|+|++|.+.+ ..+..++++++|+
T Consensus 52 ~l~~l~l~~----~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 126 (597)
T 3oja_B 52 NQKIVTFKN----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT 126 (597)
T ss_dssp CCSEEEESS----CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred CceEEEeeC----CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCC
Confidence 455555433 2233444432 345566666666665554 2345556666666666555532 1223345556666
Q ss_pred eEEeeecCCcceee--ccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCC
Q 009616 212 DLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 212 ~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~ 286 (531)
+|+|++|....... +.++++|+.|++++|. ..+. .....+++|++|++++|. ... .++.+++|+.|++++|.+
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCcc
Confidence 66665554322111 2345556666666554 1111 122345556666666555 211 244555566666555555
Q ss_pred ChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceecccccc--chhhhcccCCCcceeEeecCCc----CceecCC
Q 009616 287 NDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPI----PIVSTNA 360 (531)
Q Consensus 287 ~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~--~L~~l~~~~~nL~sl~~~~~~~----p~~~~~~ 360 (531)
++ +...++|+.|++++|..-.......++|+.|++.++. ....+ ...++|+.+.+++..+ |..++.+
T Consensus 205 ~~------l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 205 ST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp SE------EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGG-GGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred cc------ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhh-ccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 43 1233455555555543211001112344444444321 00001 1223444444444333 4567788
Q ss_pred CCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCc
Q 009616 361 PCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVP 440 (531)
Q Consensus 361 ~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 440 (531)
++|+.|++++ +.+.+. +.....+++|+.|+|+.|... . +|. .++.+++|++|+|+.|....-
T Consensus 278 ~~L~~L~Ls~-N~l~~l-----~~~~~~l~~L~~L~Ls~N~l~--~-i~~------~~~~l~~L~~L~L~~N~l~~~--- 339 (597)
T 3oja_B 278 QRLERLYISN-NRLVAL-----NLYGQPIPTLKVLDLSHNHLL--H-VER------NQPQFDRLENLYLDHNSIVTL--- 339 (597)
T ss_dssp SSCCEEECTT-SCCCEE-----ECSSSCCTTCCEEECCSSCCC--C-CGG------GHHHHTTCSEEECCSSCCCCC---
T ss_pred cCCCEEECCC-CCCCCC-----CcccccCCCCcEEECCCCCCC--c-cCc------ccccCCCCCEEECCCCCCCCc---
Confidence 8999999985 444332 223356789999998876654 2 662 445678899999998843211
Q ss_pred hhHHHHHHhHhhhccccceeecC
Q 009616 441 SEYEILLDDLFWIFYPKNLCLSP 463 (531)
Q Consensus 441 ~~~~~l~~~L~~~~~l~~l~l~~ 463 (531)
.+-..+.+++|.+..
T Consensus 340 --------~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 340 --------KLSTHHTLKNLTLSH 354 (597)
T ss_dssp --------CCCTTCCCSEEECCS
T ss_pred --------ChhhcCCCCEEEeeC
Confidence 123345678888743
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.64 E-value=3.9e-16 Score=158.82 Aligned_cols=268 Identities=14% Similarity=0.095 Sum_probs=154.9
Q ss_pred HcCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcc
Q 009616 133 ENGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~ 209 (531)
.+++++|++.. .....+| ..+..+++|++|+|++|.+.+ +..++++++|++|+|++|.+.. ....+++++++
T Consensus 68 l~~L~~L~L~~----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~ 142 (390)
T 3o6n_A 68 FRQVELLNLND----LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPK 142 (390)
T ss_dssp CCCCSEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred cccCcEEECCC----CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCC
Confidence 36899998865 2233444 367788999999999998877 4457889999999999988752 12233578899
Q ss_pred cceEEeeecCCccee--eccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCC
Q 009616 210 LEDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 210 Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~ 286 (531)
|++|++++|...+.. .+.++++|+.|++++|. .... ...+++|+.|++++|... .+...++|+.|+++++.+
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~---~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS---TLAIPIAVEELDASHNSI 217 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS---EEECCSSCSEEECCSSCC
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc---ccCCCCcceEEECCCCee
Confidence 999999888654322 24567889999988886 2111 124566666666665411 112223444444444444
Q ss_pred ChhhhhhhhcCCCCCcEEEeccccchh-HHHhcCcccceeccccccchhhh----cccCCCcceeEeecCCc---Cceec
Q 009616 287 NDQEFHPLISKFPLLEDLSIISLETLE-RIMISSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPI---PIVST 358 (531)
Q Consensus 287 ~~~~~~~~l~~~~~L~~L~L~~c~~l~-~l~~~~~~L~~L~l~~c~~L~~l----~~~~~nL~sl~~~~~~~---p~~~~ 358 (531)
+.. + ...+++|+.|++++|..-. ......++|+.|++.++. +..+ -...++|+.+.+.+..+ |....
T Consensus 218 ~~~--~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (390)
T 3o6n_A 218 NVV--R--GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292 (390)
T ss_dssp CEE--E--CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSSS
T ss_pred eec--c--ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCcccC
Confidence 321 0 0112344444444432210 001112344444443321 1000 01123344444433332 23345
Q ss_pred CCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 359 NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 359 ~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
.+++|+.|++++ +.+... +..+..+++|+.|+++.|.... +| +..+++|++|++..|
T Consensus 293 ~l~~L~~L~L~~-n~l~~~-----~~~~~~l~~L~~L~L~~N~i~~---~~--------~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 293 PIPTLKVLDLSH-NHLLHV-----ERNQPQFDRLENLYLDHNSIVT---LK--------LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCTTCCEEECCS-SCCCCC-----GGGHHHHTTCSEEECCSSCCCC---CC--------CCTTCCCSEEECCSS
T ss_pred CCCCCCEEECCC-Ccceec-----CccccccCcCCEEECCCCccce---eC--------chhhccCCEEEcCCC
Confidence 688999999985 444432 2335678999999998766432 22 556789999999998
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=169.85 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=44.4
Q ss_pred cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
+++++|+++. .....+| ..+..+++|++|++++|.+.. + ..++++++|++|++++|.+....++..++++++|
T Consensus 76 ~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 76 SHLSTLILTG----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TTCCEEECTT----CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred hhCCEEeCcC----CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 3566666653 1122232 445556666666666666555 2 2355666666666666655332233345566666
Q ss_pred ceEEeeecC
Q 009616 211 EDLSFFYCF 219 (531)
Q Consensus 211 e~L~L~~c~ 219 (531)
++|++++|.
T Consensus 152 ~~L~l~~n~ 160 (570)
T 2z63_A 152 EHLDLSSNK 160 (570)
T ss_dssp CEEECTTSC
T ss_pred CEEeCcCCc
Confidence 666666554
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=3.1e-16 Score=155.82 Aligned_cols=263 Identities=12% Similarity=0.035 Sum_probs=140.5
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
+++.+++.. .....+|..+. ++|++|+|++|.+.+ +..++++++|++|+|++|.+... .+..++.+++|++
T Consensus 32 ~l~~l~~~~----~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSD----LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTT----SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCE
T ss_pred CCeEEEecC----CCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCE
Confidence 455555432 22344555443 567777777777766 33567777777777777776431 2334567777777
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-c---cceeeccCCCCccEEEEeCCCC
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-V---PRLLDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~---~~~~~~~~~~~L~~L~L~~~~~ 286 (531)
|++++|... .++..-.++|++|++++|. ..+.. ....+++|++|++++|. . ..+..+..+++|+.|+++++.+
T Consensus 105 L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp EECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 777777532 3333323677777777775 22221 22356777777777776 1 3344567777777887777777
Q ss_pred ChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEE
Q 009616 287 NDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNV 366 (531)
Q Consensus 287 ~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L 366 (531)
+. ++..+ .++|+.|++++|..-.... -.+..+++|+.+.++.+.+... .+..+..+++|++|
T Consensus 184 ~~--l~~~~--~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L 245 (330)
T 1xku_A 184 TT--IPQGL--PPSLTELHLDGNKITKVDA--------ASLKGLNNLAKLGLSFNSISAV------DNGSLANTPHLREL 245 (330)
T ss_dssp CS--CCSSC--CTTCSEEECTTSCCCEECT--------GGGTTCTTCCEEECCSSCCCEE------CTTTGGGSTTCCEE
T ss_pred cc--CCccc--cccCCEEECCCCcCCccCH--------HHhcCCCCCCEEECCCCcCcee------ChhhccCCCCCCEE
Confidence 63 22211 2677777777754210000 0112223333333333332211 12234456677777
Q ss_pred EEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccC-CCCCCCcccceEEEEEe
Q 009616 367 LFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCH-PSLPLQVESLSLFMESF 432 (531)
Q Consensus 367 ~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~-~~~~~~~~L~~L~L~~~ 432 (531)
++++ +.+.. ++..+..+++|+.|+++.|.... +|...+.. ........|+.|++.+|
T Consensus 246 ~L~~-N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~---~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 246 HLNN-NKLVK-----VPGGLADHKYIQVVYLHNNNISA---IGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp ECCS-SCCSS-----CCTTTTTCSSCCEEECCSSCCCC---CCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred ECCC-CcCcc-----CChhhccCCCcCEEECCCCcCCc---cChhhcCCcccccccccccceEeecC
Confidence 7764 33331 22234566777777766554332 33222211 01123456667777766
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=2.4e-16 Score=172.35 Aligned_cols=286 Identities=14% Similarity=0.049 Sum_probs=139.8
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCC--CccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAK--LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~--~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~ 209 (531)
..+++|+++. .......|..+..++ +|++|+|++|.+.+ +..++.+++|++|++++|.+.+. .+..+.++++
T Consensus 222 ~~L~~L~L~~---n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 297 (680)
T 1ziw_A 222 TSIRNLSLSN---SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFN 297 (680)
T ss_dssp SCCCEEECTT---SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTT
T ss_pred ccccEEEccC---CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCC
Confidence 4677777654 111222344444443 37777777776665 34566677777777776665321 2223445555
Q ss_pred cceEEeeecCCcce-----------eeccccccccEEEEEeec-ccc-ceeeeeC-------------------------
Q 009616 210 LEDLSFFYCFGLKR-----------LRISEAHKLKSLILRFTY-QEL-ESVEIAV------------------------- 251 (531)
Q Consensus 210 Le~L~L~~c~~~~~-----------l~~~~l~~L~~L~l~~~~-~~l-~~~~~~~------------------------- 251 (531)
|++|++.+|...+. ..+..+++|++|++++|. ... +.....+
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence 55555554321110 012233444444444443 111 1111122
Q ss_pred ---CcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchh---HHHhcCcccc
Q 009616 252 ---PSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLE---RIMISSNRLM 323 (531)
Q Consensus 252 ---~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~---~l~~~~~~L~ 323 (531)
++|+.|++++|. ...+..+..+++|+.|++++|.+++......+.++++|+.|++++|.... .....+++|+
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence 355666666555 22334566777777777777777654444556677777777777765311 1112245566
Q ss_pred eecccccc--chhhh---cccCCCcceeEeecCCc----CceecCCCCCcEEEEEeeccCChhhhhhHH----HHHhhcc
Q 009616 324 HLEVYNCS--GLNRI---NVDAPNLVSFDFEDNPI----PIVSTNAPCPLNVLFSNFGDIDTHWYLNLM----EFIGAFN 390 (531)
Q Consensus 324 ~L~l~~c~--~L~~l---~~~~~nL~sl~~~~~~~----p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~l~~l~ 390 (531)
.|++.++. .+..+ --..++|+.+.+.+..+ +..+..+++|+.|++++ +.+.......++ ..+.+++
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCT
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhcCCC
Confidence 66555432 00000 01223444554444332 13345566777777764 333322111100 1245566
Q ss_pred ccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 391 QIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 391 ~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
+|+.|+++.|... . +|.. .+..+++|++|+|+.|
T Consensus 537 ~L~~L~L~~N~l~--~-i~~~-----~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 537 HLHILNLESNGFD--E-IPVE-----VFKDLFELKIIDLGLN 570 (680)
T ss_dssp TCCEEECCSSCCC--C-CCTT-----TTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCC--C-CCHH-----HcccccCcceeECCCC
Confidence 6777666655433 1 4411 2344566666666655
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=3.4e-16 Score=168.20 Aligned_cols=285 Identities=15% Similarity=0.123 Sum_probs=190.9
Q ss_pred cCCcEEEEeeecCCCcccc---CCccccCCCCccEEEecCCcCCC------CcCCCCCCccCEEEeeeEEechHhHHHHH
Q 009616 134 NGVKELDFEVITDKNSVNA---LPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVNDQMVQSLV 204 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~---lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~~l 204 (531)
+++++|+|.. +...... ++.....+++|++|++++|.+.+ +..+.++++|++|++++|.+.+ ++..+
T Consensus 164 ~~L~~L~L~~--~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~ 239 (592)
T 3ogk_B 164 RKIKTLLMEE--SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFF 239 (592)
T ss_dssp TTCSEEECTT--CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHH
T ss_pred CCCCEEECcc--ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHH
Confidence 6899999875 2111111 34444578999999999998863 3344678999999999987644 66778
Q ss_pred hCCcccceEEeeecCCc----------------cee------------eccccccccEEEEEeec---cccceeeeeCCc
Q 009616 205 RECRVLEDLSFFYCFGL----------------KRL------------RISEAHKLKSLILRFTY---QELESVEIAVPS 253 (531)
Q Consensus 205 ~~~~~Le~L~L~~c~~~----------------~~l------------~~~~l~~L~~L~l~~~~---~~l~~~~~~~~~ 253 (531)
.++++|++|+++.+... ..+ .+..+++|++|++++|. ..+..+...+++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 88999999999743221 111 12246799999999886 122233357899
Q ss_pred ccEEEecccc--ccceeeccCCCCccEEEEe-----------CCCCChhhhhhhhcCCCCCcEEEeccccc----hhHHH
Q 009616 254 LQQLELSFSR--VPRLLDVAECPHLRKLVLF-----------LPHFNDQEFHPLISKFPLLEDLSIISLET----LERIM 316 (531)
Q Consensus 254 L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~-----------~~~~~~~~~~~~l~~~~~L~~L~L~~c~~----l~~l~ 316 (531)
|++|+++++. ...+.....+++|+.|+++ ++.+++..+..+...+++|++|++..+.. +..+.
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 9999998554 3333345678999999998 46788777777777899999999943322 33344
Q ss_pred hcCcccceecccc---ccchhh---------hcccCCCcceeEeecCC--cC----ceec-CCCCCcEEEEEeeccCChh
Q 009616 317 ISSNRLMHLEVYN---CSGLNR---------INVDAPNLVSFDFEDNP--IP----IVST-NAPCPLNVLFSNFGDIDTH 377 (531)
Q Consensus 317 ~~~~~L~~L~l~~---c~~L~~---------l~~~~~nL~sl~~~~~~--~p----~~~~-~~~~L~~L~l~~~~~~~~~ 377 (531)
..+++|+.|++.. |..+.. +....++|+.+.+..+. +. ..++ .+++|+.|++++ +.+..
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~- 477 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY-VGESD- 477 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS-CCSSH-
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC-CCCCH-
Confidence 4477899998874 334432 23346788888874321 21 1222 478899999985 33332
Q ss_pred hhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616 378 WYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS 433 (531)
Q Consensus 378 ~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~ 433 (531)
..++.++.++++|+.|+++.|...... ++. ....+++|++|+|+.|.
T Consensus 478 --~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~------~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 478 --EGLMEFSRGCPNLQKLEMRGCCFSERA-IAA------AVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp --HHHHHHHTCCTTCCEEEEESCCCBHHH-HHH------HHHHCSSCCEEEEESCB
T ss_pred --HHHHHHHhcCcccCeeeccCCCCcHHH-HHH------HHHhcCccCeeECcCCc
Confidence 345567788999999999987754433 331 12346889999999884
No 46
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1.9e-16 Score=157.63 Aligned_cols=251 Identities=15% Similarity=0.168 Sum_probs=172.2
Q ss_pred HHHHHHHHHc-CCcEEEEeeecCCCccccCCccccCC--CCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhH
Q 009616 125 DKWVELAMEN-GVKELDFEVITDKNSVNALPQTIFSA--KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMV 200 (531)
Q Consensus 125 ~~wl~~~~~~-~l~~L~L~~~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l 200 (531)
.+|-..+..+ .++.++++. ... -|..+..+ ++++.|++++|.+.+ ++...++++|++|++++|.+++..+
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~--~~~----~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTG--KNL----HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTT--CBC----CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred HHHHHHhcCchhheeecccc--ccC----CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence 4565554333 488888764 111 14445555 899999999999888 5667789999999999999977778
Q ss_pred HHHHhCCcccceEEeeecCCcce--eeccccccccEEEEEeec--c--ccceeeeeCCcccEEEeccc-c-c--cceeec
Q 009616 201 QSLVRECRVLEDLSFFYCFGLKR--LRISEAHKLKSLILRFTY--Q--ELESVEIAVPSLQQLELSFS-R-V--PRLLDV 270 (531)
Q Consensus 201 ~~~l~~~~~Le~L~L~~c~~~~~--l~~~~l~~L~~L~l~~~~--~--~l~~~~~~~~~L~~L~l~~~-~-~--~~~~~~ 270 (531)
+..+..|++|++|++++|..... ..+..+++|++|++++|. . .++.....+++|++|++++| . . ..+..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 88899999999999999975332 234568999999999984 2 24444557899999999999 5 2 245567
Q ss_pred cCCC-CccEEEEeCC--CCChhhhhhhhcCCCCCcEEEeccccchhHH----HhcCcccceeccccccchhhhcccCCCc
Q 009616 271 AECP-HLRKLVLFLP--HFNDQEFHPLISKFPLLEDLSIISLETLERI----MISSNRLMHLEVYNCSGLNRINVDAPNL 343 (531)
Q Consensus 271 ~~~~-~L~~L~L~~~--~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l----~~~~~~L~~L~l~~c~~L~~l~~~~~nL 343 (531)
..++ +|+.|+++++ .+++..++..+.++++|+.|++++|..++.. ....++|+.|++.+|..+..-.
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------ 264 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET------ 264 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG------
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH------
Confidence 8889 9999999988 6776777778888999999999998743221 1123555666665554211000
Q ss_pred ceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeee
Q 009616 344 VSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVL 405 (531)
Q Consensus 344 ~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~ 405 (531)
...+.++++|+.|++++ + ... ..+..+.. +++.|.++.+...+.
T Consensus 265 ----------~~~l~~~~~L~~L~l~~-~-i~~---~~~~~l~~---~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 265 ----------LLELGEIPTLKTLQVFG-I-VPD---GTLQLLKE---ALPHLQINCSHFTTI 308 (336)
T ss_dssp ----------GGGGGGCTTCCEEECTT-S-SCT---TCHHHHHH---HSTTSEESCCCSCCT
T ss_pred ----------HHHHhcCCCCCEEeccC-c-cCH---HHHHHHHh---hCcceEEecccCccc
Confidence 02345688999999984 2 222 12223333 355556776665554
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=5.9e-16 Score=166.47 Aligned_cols=256 Identities=15% Similarity=0.145 Sum_probs=155.5
Q ss_pred cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
++++.|+++. + ....+| ..+..+++|++|+|++|.+.+ +..++++++|++|+|++|.++. ..+.+++++++|
T Consensus 75 ~~L~~L~L~~--n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L 149 (597)
T 3oja_B 75 RQVELLNLND--L--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL 149 (597)
T ss_dssp CCCSEEECTT--S--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEECCC--C--CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCC
Confidence 5888888865 1 223344 467788889999999988877 4456888999999999888753 223345788899
Q ss_pred ceEEeeecCCccee--eccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCC--------------
Q 009616 211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAEC-------------- 273 (531)
Q Consensus 211 e~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------- 273 (531)
++|+|++|...+.. .+.++++|+.|++++|. ..+. ...+++|+.|++++|... .+...
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~---~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS---TLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS---EEECCTTCSEEECCSSCCC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc---cccCCchhheeeccCCccc
Confidence 99999888654432 24567888888888875 2211 123556666666655410 11222
Q ss_pred -------CCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCccee
Q 009616 274 -------PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSF 346 (531)
Q Consensus 274 -------~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl 346 (531)
++|+.|+|++|.+++. ..+.++++|+.|+|++|..-.... -.+..+++|+.+.++.+++..+
T Consensus 225 ~~~~~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~l 293 (597)
T 3oja_B 225 VVRGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMY--------HPFVKMQRLERLYISNNRLVAL 293 (597)
T ss_dssp EEECSCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEES--------GGGTTCSSCCEEECTTSCCCEE
T ss_pred ccccccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCH--------HHhcCccCCCEEECCCCCCCCC
Confidence 3455555555555531 234455555555555543110000 0112233344444444443222
Q ss_pred EeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccce
Q 009616 347 DFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLS 426 (531)
Q Consensus 347 ~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~ 426 (531)
|.....+++|+.|++++ +.+.. ++..+..+++|+.|+++.|.... +| +..+++|++
T Consensus 294 -------~~~~~~l~~L~~L~Ls~-N~l~~-----i~~~~~~l~~L~~L~L~~N~l~~---~~--------~~~~~~L~~ 349 (597)
T 3oja_B 294 -------NLYGQPIPTLKVLDLSH-NHLLH-----VERNQPQFDRLENLYLDHNSIVT---LK--------LSTHHTLKN 349 (597)
T ss_dssp -------ECSSSCCTTCCEEECCS-SCCCC-----CGGGHHHHTTCSEEECCSSCCCC---CC--------CCTTCCCSE
T ss_pred -------CcccccCCCCcEEECCC-CCCCc-----cCcccccCCCCCEEECCCCCCCC---cC--------hhhcCCCCE
Confidence 33445688999999985 44442 22335788999999998766432 22 556789999
Q ss_pred EEEEEeee
Q 009616 427 LFMESFSL 434 (531)
Q Consensus 427 L~L~~~~~ 434 (531)
|+|+.|..
T Consensus 350 L~l~~N~~ 357 (597)
T 3oja_B 350 LTLSHNDW 357 (597)
T ss_dssp EECCSSCE
T ss_pred EEeeCCCC
Confidence 99998843
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=2.2e-16 Score=155.07 Aligned_cols=237 Identities=16% Similarity=0.090 Sum_probs=134.6
Q ss_pred CccccCCccccCCCCccEEEecCCcCCC-CcC-CCCCCccCEEEeeeEEechH-hHHHHHhCCcccceEEeeecCCcce-
Q 009616 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSH-CANLQSLKKLSLDEVYVNDQ-MVQSLVRECRVLEDLSFFYCFGLKR- 223 (531)
Q Consensus 148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~-~~~l~~L~~L~L~~~~~~~~-~l~~~l~~~~~Le~L~L~~c~~~~~- 223 (531)
.....+|..+. ++|++|+|++|.+.. +.. +.++++|++|+|++|.++.. ..+..+..+++|++|++++|.....
T Consensus 17 ~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 17 KGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE
T ss_pred CCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh
Confidence 34556776553 689999999998887 443 67899999999999887421 1123355788999999988864321
Q ss_pred eeccccccccEEEEEeec-cccce--eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616 224 LRISEAHKLKSLILRFTY-QELES--VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKF 298 (531)
Q Consensus 224 l~~~~l~~L~~L~l~~~~-~~l~~--~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 298 (531)
..+.++++|++|++++|. ..... ....+++|++|++++|. ...+..++.+++|+.|++++|.+++...+..+..+
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 113355666666666654 22211 22245556666666555 22333455555666666655555543344445555
Q ss_pred CCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhh
Q 009616 299 PLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHW 378 (531)
Q Consensus 299 ~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~ 378 (531)
++|+.|++++|. +.. ..|..+..+++|+.|++++ +.+....
T Consensus 175 ~~L~~L~Ls~n~--------------------------------l~~------~~~~~~~~l~~L~~L~L~~-N~l~~~~ 215 (306)
T 2z66_A 175 RNLTFLDLSQCQ--------------------------------LEQ------LSPTAFNSLSSLQVLNMSH-NNFFSLD 215 (306)
T ss_dssp TTCCEEECTTSC--------------------------------CCE------ECTTTTTTCTTCCEEECTT-SCCSBCC
T ss_pred cCCCEEECCCCC--------------------------------cCC------cCHHHhcCCCCCCEEECCC-CccCccC
Confidence 555555555532 111 0122333455666666653 3322211
Q ss_pred hhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCC-cccceEEEEEeeeccC
Q 009616 379 YLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQ-VESLSLFMESFSLYMD 437 (531)
Q Consensus 379 ~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~-~~L~~L~L~~~~~~~~ 437 (531)
. ..+..+++|+.|+++.|..... .|. .+..+ .+|++|+|+.|....+
T Consensus 216 ~----~~~~~l~~L~~L~L~~N~l~~~--~~~------~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 216 T----FPYKCLNSLQVLDYSLNHIMTS--KKQ------ELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp S----GGGTTCTTCCEEECTTSCCCBC--SSS------SCCCCCTTCCEEECTTCCEECS
T ss_pred h----hhccCcccCCEeECCCCCCccc--CHH------HHHhhhccCCEEEccCCCeecc
Confidence 1 1235667777777776655443 331 34444 4899999988754433
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=5.7e-16 Score=169.33 Aligned_cols=287 Identities=17% Similarity=0.155 Sum_probs=164.4
Q ss_pred cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.++++|+++. .....+|. .+.++++|++|+|++|.+.+ +..++++++|++|+|++|.+.. ..+..++++++|
T Consensus 25 ~~l~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTH----NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCS----SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEECCC----CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCCC
Confidence 4677777764 12233443 45667777777777777666 4445667777777777776632 112235667777
Q ss_pred ceEEeeecCCccee--eccccccccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeec--cCCCCccEEEEe
Q 009616 211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDV--AECPHLRKLVLF 282 (531)
Q Consensus 211 e~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~--~~~~~L~~L~L~ 282 (531)
++|++++|...+.. .+.++++|++|++++|. +..+.....+++|++|++++|. +..+..+ ..+++|+.|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 77777777543221 24456777777777775 1122223356777777777776 2222222 245677777777
Q ss_pred CCCCChhhhhhhhcCCCCCcEEEeccccchhHHH------hcCcccceeccccccchhhh------cccCCCcceeEeec
Q 009616 283 LPHFNDQEFHPLISKFPLLEDLSIISLETLERIM------ISSNRLMHLEVYNCSGLNRI------NVDAPNLVSFDFED 350 (531)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~------~~~~~L~~L~l~~c~~L~~l------~~~~~nL~sl~~~~ 350 (531)
+|.+++ ..+..+..+++|+.|++.++....... ...++|+.|++.++. +..+ .+..++|+.+.+.+
T Consensus 180 ~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 180 SNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp TCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChhHhhccCcCCCCEEECCC
Confidence 777663 234445566777777776654321111 123567777776642 1110 01123466666655
Q ss_pred CCc----CceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeee---eeccccccCCCCCCCcc
Q 009616 351 NPI----PIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLF---NIDEFRSCHPSLPLQVE 423 (531)
Q Consensus 351 ~~~----p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~---~ip~~~~~~~~~~~~~~ 423 (531)
..+ |..+..+++|+.|++++ +.+.+. .+..+.++++|+.|++..+...... .+| .+... .+..+++
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp-~i~~~-~~~~l~~ 330 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEY-NNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLP-KIDDF-SFQWLKC 330 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCS-CCBSEE----CTTTTTTCTTCCEEECTTCBCCC------CC-EECTT-TTTTCTT
T ss_pred CCcCccCcccccCcccccEeeCCC-CccCcc----ChhhhcCCCCccEEeccchhhhccccccccc-ccChh-hcccCCC
Confidence 543 34566788999999985 333332 2344577889999888643322211 023 11122 4667899
Q ss_pred cceEEEEEeee
Q 009616 424 SLSLFMESFSL 434 (531)
Q Consensus 424 L~~L~L~~~~~ 434 (531)
|++|++..|..
T Consensus 331 L~~L~l~~n~l 341 (680)
T 1ziw_A 331 LEHLNMEDNDI 341 (680)
T ss_dssp CCEEECCSCCB
T ss_pred CCEEECCCCcc
Confidence 99999998743
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=6.1e-15 Score=157.91 Aligned_cols=255 Identities=18% Similarity=0.133 Sum_probs=175.9
Q ss_pred HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le 211 (531)
..+++.|+++. .....+|..+. ++|++|+|++|.+.. |. .+++|++|+|++|.++. ++. .+++|+
T Consensus 39 ~~~l~~L~ls~----n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~ 104 (622)
T 3g06_A 39 NNGNAVLNVGE----SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLL 104 (622)
T ss_dssp HHCCCEEECCS----SCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCC
T ss_pred CCCCcEEEecC----CCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCC
Confidence 34788888865 33457787665 789999999998887 43 57899999999998743 332 678999
Q ss_pred eEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616 212 DLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE 290 (531)
Q Consensus 212 ~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~ 290 (531)
+|++++|...+ ++. .+++|+.|++++|. +..+....++|++|++++|. ...+ ...++|+.|++++|.++.
T Consensus 105 ~L~Ls~N~l~~-l~~-~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~~-- 175 (622)
T 3g06_A 105 ELSIFSNPLTH-LPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTS-- 175 (622)
T ss_dssp EEEECSCCCCC-CCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--
T ss_pred EEECcCCcCCC-CCC-CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCCC--
Confidence 99999886533 222 46889999999886 22233345899999999987 3333 245788999998888875
Q ss_pred hhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEe
Q 009616 291 FHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSN 370 (531)
Q Consensus 291 ~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~ 370 (531)
++ ..+++|+.|++++|.. ..+....++|+.|.+.++. +..+.-..++|+.+.+++..+......+++|+.|++++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG 250 (622)
T ss_dssp CC---CCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred Cc---ccCCCCcEEECCCCCC-CCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCC
Confidence 22 5678899999988753 2333344678888777652 33333334567777666655432114568899999985
Q ss_pred eccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616 371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS 433 (531)
Q Consensus 371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~ 433 (531)
+.+.. ++..+++|+.|+++.|... . +|+ .+..+++|+.|+|..|.
T Consensus 251 -N~L~~--------lp~~~~~L~~L~Ls~N~L~--~-lp~------~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 251 -NRLTS--------LPMLPSGLLSLSVYRNQLT--R-LPE------SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -SCCSC--------CCCCCTTCCEEECCSSCCC--S-CCG------GGGGSCTTCEEECCSCC
T ss_pred -CCCCc--------CCcccccCcEEeCCCCCCC--c-CCH------HHhhccccCEEEecCCC
Confidence 44432 1126788999999877655 3 773 45567899999999983
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=7e-16 Score=164.74 Aligned_cols=100 Identities=18% Similarity=0.086 Sum_probs=52.2
Q ss_pred cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
+++++|+++. .....+| ..+..+++|++|+|++|.+.+ +..+.++++|++|+|++|.+.. ++.. .+++|
T Consensus 52 ~~L~~L~Ls~----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQ----NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCC--PMASL 123 (562)
T ss_dssp TTCCEEECCS----SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--ECSC--CCTTC
T ss_pred CCcCEEECCC----CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--cCcc--ccccC
Confidence 4566666553 1122333 345556666666666666555 3445556666666666665531 2221 55666
Q ss_pred ceEEeeecCCcc-e--eeccccccccEEEEEeec
Q 009616 211 EDLSFFYCFGLK-R--LRISEAHKLKSLILRFTY 241 (531)
Q Consensus 211 e~L~L~~c~~~~-~--l~~~~l~~L~~L~l~~~~ 241 (531)
++|++++|...+ . -.+.++++|++|++++|.
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 666666665432 1 123455666666666654
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.59 E-value=9.9e-16 Score=152.29 Aligned_cols=262 Identities=11% Similarity=-0.002 Sum_probs=151.5
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.++.++++. .....+|..+. ++|++|++++|.+.+ +..+.++++|++|++++|.+... .+..++++++|++
T Consensus 34 ~l~~l~~~~----~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSD----LGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCS----SCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCE
T ss_pred cCCEEECCC----CCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCE
Confidence 466666543 23446666553 578888888888776 44677888888888888877432 2334677888888
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-c---cceeeccCCCCccEEEEeCCCC
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-V---PRLLDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~---~~~~~~~~~~~L~~L~L~~~~~ 286 (531)
|++++|... .++..-.++|++|++++|. ..++. ....+++|++|++++|. . ..+..++.+ +|+.|++++|.+
T Consensus 107 L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 107 LYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp EECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred EECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888877543 3332223677888877776 22222 23356777777777776 1 233445555 777777777776
Q ss_pred ChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEE
Q 009616 287 NDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNV 366 (531)
Q Consensus 287 ~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L 366 (531)
++ ++..+ .++|+.|+++++..-.. ..-.+..+++|+.+.++.+++. +..+..+..+++|+.|
T Consensus 185 ~~--l~~~~--~~~L~~L~l~~n~i~~~--------~~~~l~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 185 TG--IPKDL--PETLNELHLDHNKIQAI--------ELEDLLRYSKLYRLGLGHNQIR------MIENGSLSFLPTLREL 246 (332)
T ss_dssp SS--CCSSS--CSSCSCCBCCSSCCCCC--------CTTSSTTCTTCSCCBCCSSCCC------CCCTTGGGGCTTCCEE
T ss_pred Cc--cCccc--cCCCCEEECCCCcCCcc--------CHHHhcCCCCCCEEECCCCcCC------cCChhHhhCCCCCCEE
Confidence 64 22211 25777777776532110 0001223444555555444432 1123455667888888
Q ss_pred EEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccc-cCCCCCCCcccceEEEEEe
Q 009616 367 LFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRS-CHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 367 ~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~-~~~~~~~~~~L~~L~L~~~ 432 (531)
++++ +.+.. ++..+..+++|+.|+++.|.... +|...+ +.........|+.|++.+|
T Consensus 247 ~L~~-N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~---~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 247 HLDN-NKLSR-----VPAGLPDLKLLQVVYLHTNNITK---VGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp ECCS-SCCCB-----CCTTGGGCTTCCEEECCSSCCCB---CCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred ECCC-CcCee-----cChhhhcCccCCEEECCCCCCCc---cChhHccccccccccccccceEeecC
Confidence 8875 43332 22335678888888887665443 332222 1101123567788888877
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.59 E-value=6e-15 Score=146.46 Aligned_cols=266 Identities=14% Similarity=0.086 Sum_probs=157.2
Q ss_pred cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
+.++.|+++. .....+|. .+..+++|++|+|++|.+.+ |..++++++|++|++++|.++. ++. .-+++|
T Consensus 52 ~~l~~L~L~~----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L 123 (330)
T 1xku_A 52 PDTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTL 123 (330)
T ss_dssp TTCCEEECCS----SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTC
T ss_pred CCCeEEECCC----CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccc
Confidence 4678888765 22334544 56778889999998888877 5667888889999988887742 221 224788
Q ss_pred ceEEeeecCCccee--eccccccccEEEEEeec-c---ccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeC
Q 009616 211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-Q---ELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFL 283 (531)
Q Consensus 211 e~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~---~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~ 283 (531)
++|++++|...+.. .+.++++|+.|++++|. . ........+++|++|++++|. ...+..+ .++|+.|++++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~ 201 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG 201 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTT
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCC
Confidence 88888887654322 24567888888888876 1 112223367888888888887 4343333 27888888888
Q ss_pred CCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCC
Q 009616 284 PHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCP 363 (531)
Q Consensus 284 ~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L 363 (531)
|.+++. .+..+.++++|+.|+|++|..-.... -.+..+++|+.+.++.+++. .+|..+..+++|
T Consensus 202 n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L 265 (330)
T 1xku_A 202 NKITKV-DAASLKGLNNLAKLGLSFNSISAVDN--------GSLANTPHLRELHLNNNKLV-------KVPGGLADHKYI 265 (330)
T ss_dssp SCCCEE-CTGGGTTCTTCCEEECCSSCCCEECT--------TTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSC
T ss_pred CcCCcc-CHHHhcCCCCCCEEECCCCcCceeCh--------hhccCCCCCCEEECCCCcCc-------cCChhhccCCCc
Confidence 888743 34556788888888888864211000 01222333444444443332 234445567778
Q ss_pred cEEEEEeeccCChhhhhhHHH--HHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 364 LNVLFSNFGDIDTHWYLNLME--FIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 364 ~~L~l~~~~~~~~~~~~~l~~--~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
+.|++++ +.+.......+.. .....+.++.|++..|...... +++ . .+..+.+++.++|+.|
T Consensus 266 ~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~-i~~----~-~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 266 QVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE-IQP----S-TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG-SCG----G-GGTTCCCGGGEEC---
T ss_pred CEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccccc-cCc----c-ccccccceeEEEeccc
Confidence 8888874 4443322111100 0112466777777665543322 321 1 3445677888887765
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.58 E-value=5.5e-16 Score=152.27 Aligned_cols=220 Identities=16% Similarity=0.055 Sum_probs=155.6
Q ss_pred cCCcEEEEeeecCCCccccCCcc-ccCCCCccEEEecCCcCCC----CcCCCCCCccCEEEeeeEEechHhHHHHHhCCc
Q 009616 134 NGVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECR 208 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~ 208 (531)
.++++|+++. .....+|.. +..+++|++|+|++|.+.. +..+..+++|++|++++|.+.. ++..+..++
T Consensus 28 ~~l~~L~L~~----n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELES----NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLE 101 (306)
T ss_dssp TTCCEEECCS----SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCT
T ss_pred CCCCEEECCC----CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCC
Confidence 4789999875 234467765 4688999999999998864 3455679999999999998743 233367899
Q ss_pred ccceEEeeecCCccee---eccccccccEEEEEeec--cccceeeeeCCcccEEEecccc-c--cceeeccCCCCccEEE
Q 009616 209 VLEDLSFFYCFGLKRL---RISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR-V--PRLLDVAECPHLRKLV 280 (531)
Q Consensus 209 ~Le~L~L~~c~~~~~l---~~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~-~--~~~~~~~~~~~L~~L~ 280 (531)
+|++|++++|...+.. .+.++++|+.|++++|. ...+.....+++|++|++++|. . ..+..+..+++|+.|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 9999999998653322 34568999999999986 2222333468999999999998 2 3577889999999999
Q ss_pred EeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCC
Q 009616 281 LFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNA 360 (531)
Q Consensus 281 L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~ 360 (531)
+++|.+++ ..+..+.++++|+.|+|++|.... +....+..+++|+.++++.+++ .+..|..+..+
T Consensus 182 Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l------~~~~~~~~~~~ 246 (306)
T 2z66_A 182 LSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFS--------LDTFPYKCLNSLQVLDYSLNHI------MTSKKQELQHF 246 (306)
T ss_dssp CTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSB--------CCSGGGTTCTTCCEEECTTSCC------CBCSSSSCCCC
T ss_pred CCCCCcCC-cCHHHhcCCCCCCEEECCCCccCc--------cChhhccCcccCCEeECCCCCC------cccCHHHHHhh
Confidence 99999985 345567889999999999975311 1111123344455555554443 12234445555
Q ss_pred -CCCcEEEEEeeccCC
Q 009616 361 -PCPLNVLFSNFGDID 375 (531)
Q Consensus 361 -~~L~~L~l~~~~~~~ 375 (531)
++|+.|++++ +.+.
T Consensus 247 ~~~L~~L~L~~-N~~~ 261 (306)
T 2z66_A 247 PSSLAFLNLTQ-NDFA 261 (306)
T ss_dssp CTTCCEEECTT-CCEE
T ss_pred hccCCEEEccC-CCee
Confidence 4899999985 4443
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.58 E-value=4.3e-15 Score=146.40 Aligned_cols=172 Identities=12% Similarity=0.039 Sum_probs=135.8
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le 211 (531)
+++++|+++. .......+|..+..+++|++|+|++|.+.+ |..+.++++|++|+|++|.+.+ .++..++.+++|+
T Consensus 76 ~~L~~L~L~~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLYIGG--INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLV 152 (313)
T ss_dssp TTCSEEEEEE--ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCC
T ss_pred CCCCeeeCCC--CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCC
Confidence 5899999983 123344788899999999999999999985 7778999999999999999854 2455578899999
Q ss_pred eEEeeecCCcceee--ccccc-cccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCC
Q 009616 212 DLSFFYCFGLKRLR--ISEAH-KLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP 284 (531)
Q Consensus 212 ~L~L~~c~~~~~l~--~~~l~-~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~ 284 (531)
+|++++|...+.++ +.+++ +|+.|++++|. +..+.....++ |++|++++|. +..+..++.+++|+.|++++|
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 99999998754443 44566 89999999987 23333333444 9999999998 556777899999999999999
Q ss_pred CCChhhhhhhhcCCCCCcEEEeccccc
Q 009616 285 HFNDQEFHPLISKFPLLEDLSIISLET 311 (531)
Q Consensus 285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~ 311 (531)
.+++. ++. +..+++|+.|+|++|..
T Consensus 232 ~l~~~-~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 232 SLAFD-LGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp EECCB-GGG-CCCCTTCCEEECCSSCC
T ss_pred ceeee-cCc-ccccCCCCEEECcCCcc
Confidence 99853 333 67889999999998764
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=1.3e-15 Score=147.90 Aligned_cols=207 Identities=15% Similarity=0.067 Sum_probs=141.7
Q ss_pred ccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--
Q 009616 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-- 224 (531)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l-- 224 (531)
....+|..+ .++|++|++++|.+.. +..+.++++|++|++++|.+++. .+..++.+++|++|++++|..++.+
T Consensus 22 ~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 22 GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCH
Confidence 345566544 3689999999999887 45678899999999999987432 2344678999999999999755554
Q ss_pred -eccccccccEEEEEeec-ccc-ceeeeeCCcccEEEecccc-ccce-eeccCCCCccEEEEeCCCCChhhhhhhhcCCC
Q 009616 225 -RISEAHKLKSLILRFTY-QEL-ESVEIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHFNDQEFHPLISKFP 299 (531)
Q Consensus 225 -~~~~l~~L~~L~l~~~~-~~l-~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 299 (531)
.+.++++|++|++++|. ... +.....+++|++|++++|. ...+ ..++.+++|+.|++++|.++. .....+.+++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHhcCcc
Confidence 34567899999999886 222 2233468899999999988 3333 347889999999999998884 3445577889
Q ss_pred CCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccC
Q 009616 300 LLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDI 374 (531)
Q Consensus 300 ~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~ 374 (531)
+|+.|++++|........ .+..+++|+.+.++.+++. +..+..+..+++|+.+++++ ++.
T Consensus 178 ~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~-N~~ 237 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPH--------AFRDLGRLMTLYLFANNLS------ALPTEALAPLRALQYLRLND-NPW 237 (285)
T ss_dssp TCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSSCCS------CCCHHHHTTCTTCCEEECCS-SCE
T ss_pred ccCEEECCCCcccccCHh--------HccCcccccEeeCCCCcCC------cCCHHHcccCcccCEEeccC-CCc
Confidence 999999998642111000 1222344444444444432 11124466788999999985 443
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.57 E-value=5.9e-16 Score=153.93 Aligned_cols=266 Identities=13% Similarity=0.061 Sum_probs=168.3
Q ss_pred cCCcEEEEeeecCCCccccC-CccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
++++.|+++. + ....+ |..+..+++|++|+|++|.+.+ +..++++++|++|++++|.+.. ++. ..+++|
T Consensus 54 ~~l~~L~l~~--n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQN--N--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSL 125 (332)
T ss_dssp TTCCEEECCS--S--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTC
T ss_pred CCCeEEECCC--C--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccC
Confidence 5789999875 2 23344 4567889999999999999887 5678899999999999998742 222 223899
Q ss_pred ceEEeeecCCccee--eccccccccEEEEEeec-cc--cceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCC
Q 009616 211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QE--LESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLP 284 (531)
Q Consensus 211 e~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~--l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~ 284 (531)
++|++++|...... .+.++++|+.|++++|. .. .........+|++|++++|. ...|..+. ++|+.|++++|
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSS
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCC
Confidence 99999998764322 25578999999999986 11 21222222289999999998 44444333 78999999999
Q ss_pred CCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCc
Q 009616 285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPL 364 (531)
Q Consensus 285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~ 364 (531)
.+++. .+..+.++++|+.|+|++|..-... .-.+..+++|+.+.++.+++. .+|..+..+++|+
T Consensus 204 ~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 204 KIQAI-ELEDLLRYSKLYRLGLGHNQIRMIE--------NGSLSFLPTLRELHLDNNKLS-------RVPAGLPDLKLLQ 267 (332)
T ss_dssp CCCCC-CTTSSTTCTTCSCCBCCSSCCCCCC--------TTGGGGCTTCCEEECCSSCCC-------BCCTTGGGCTTCC
T ss_pred cCCcc-CHHHhcCCCCCCEEECCCCcCCcCC--------hhHhhCCCCCCEEECCCCcCe-------ecChhhhcCccCC
Confidence 98853 3455778899999999986421100 001223344444444444432 2354566788889
Q ss_pred EEEEEeeccCChhhhhhHHHH--HhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 365 NVLFSNFGDIDTHWYLNLMEF--IGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 365 ~L~l~~~~~~~~~~~~~l~~~--l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
.|++++ +.+.......+... ....++|+.|++..|...... +++ . .+..+++|+.++++.|
T Consensus 268 ~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~-~~~----~-~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 268 VVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE-VQP----A-TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG-SCG----G-GGTTBCCSTTEEC---
T ss_pred EEECCC-CCCCccChhHccccccccccccccceEeecCcccccc-cCc----c-cccccchhhhhhcccc
Confidence 999885 44443222111000 011466778887766544222 221 1 3455788888888766
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=3.6e-15 Score=147.29 Aligned_cols=243 Identities=18% Similarity=0.156 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHH--cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechH
Q 009616 122 PLFDKWVELAME--NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQ 198 (531)
Q Consensus 122 ~~~~~wl~~~~~--~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~ 198 (531)
..+...+..... +++++|+++. + ....++ ..+..+++|++|+|++|.+.+...+..+++|++|++++|.+++
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~--n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~- 94 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSG--N--PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE- 94 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTT--S--CCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE-
T ss_pred cchhhhHHHHhccCCCCCEEECcC--C--ccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc-
Confidence 334444443332 4789999875 2 223344 5677889999999999988772237889999999999998854
Q ss_pred hHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-cc-ceeec-cCC
Q 009616 199 MVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-VP-RLLDV-AEC 273 (531)
Q Consensus 199 ~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~~-~~~~~-~~~ 273 (531)
+..+++|++|++++|... .+....+++|+.|++++|. ..+.. ....+++|++|++++|. .. .+..+ ..+
T Consensus 95 -----l~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 95 -----LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp -----EEECTTCCEEECCSSCCS-EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred -----ccCCCCcCEEECCCCccC-CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 234589999999988753 3444457889999999887 33333 23367889999999988 22 23333 468
Q ss_pred CCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCc
Q 009616 274 PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI 353 (531)
Q Consensus 274 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~ 353 (531)
++|+.|++++|.++.. +. ...+++|+.|+|++|..- .+. + .+..+++|+.+.++.+++.. +
T Consensus 169 ~~L~~L~L~~N~l~~~--~~-~~~l~~L~~L~Ls~N~l~-~l~---~-----~~~~l~~L~~L~L~~N~l~~-------l 229 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDV--KG-QVVFAKLKTLDLSSNKLA-FMG---P-----EFQSAAGVTWISLRNNKLVL-------I 229 (317)
T ss_dssp TTCCEEECTTSCCCEE--EC-CCCCTTCCEEECCSSCCC-EEC---G-----GGGGGTTCSEEECTTSCCCE-------E
T ss_pred CcCCEEECCCCcCccc--cc-ccccccCCEEECCCCcCC-cch---h-----hhcccCcccEEECcCCcccc-------h
Confidence 8999999999888753 22 235888999999886421 000 0 12334455555555555432 2
Q ss_pred CceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEE
Q 009616 354 PIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLS 398 (531)
Q Consensus 354 p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~ 398 (531)
|..+..+++|+.+++++ +... ...++.++..+++|+.|.+.
T Consensus 230 ~~~~~~l~~L~~L~l~~-N~~~---~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRG-NGFH---CGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCCCTTCCEEECTT-CCCB---HHHHHHHHHTCHHHHHHHHH
T ss_pred hhHhhcCCCCCEEEccC-CCcc---CcCHHHHHhccccceEEECC
Confidence 44456788999999985 4333 24566788888999888776
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=156.04 Aligned_cols=150 Identities=15% Similarity=0.038 Sum_probs=63.0
Q ss_pred cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--ecccccc
Q 009616 156 TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHK 231 (531)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~~~~l~~ 231 (531)
.+..+++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+..+++|++|+|++|...... .+.++++
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 33444555555555554443 23344455555555555444210 1112344455555555544322111 1223445
Q ss_pred ccEEEEEeec--cccce-eeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616 232 LKSLILRFTY--QELES-VEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (531)
Q Consensus 232 L~~L~l~~~~--~~l~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (531)
|+.|++++|. ..+.. ....+++|++|++++|. ...+ .+..+++|+.|+|++|.+++ ..+..+.++++|+.|+|+
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECT
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECC
Confidence 5555554433 11111 11234455555555554 2221 34444555555555554442 222334445555555554
Q ss_pred c
Q 009616 308 S 308 (531)
Q Consensus 308 ~ 308 (531)
+
T Consensus 240 ~ 240 (440)
T 3zyj_A 240 Q 240 (440)
T ss_dssp T
T ss_pred C
Confidence 4
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=1.6e-15 Score=157.40 Aligned_cols=169 Identities=17% Similarity=0.093 Sum_probs=86.0
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
+++.|+|+. + ......|..+..+++|++|+|++|.+.+ +..+.++++|++|+|++|.++. ..+..+..+++|++
T Consensus 76 ~l~~L~L~~--n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 76 NTRYLNLME--N-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRE 151 (452)
T ss_dssp TCSEEECCS--S-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCE
T ss_pred CccEEECcC--C-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCE
Confidence 556666553 1 1111223445556666666666666555 3445556666666666665532 11223455666666
Q ss_pred EEeeecCCccee--eccccccccEEEEEeecccccee----eeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCC
Q 009616 213 LSFFYCFGLKRL--RISEAHKLKSLILRFTYQELESV----EIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 213 L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~~~l~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~ 286 (531)
|+|++|...... .+.++++|+.|++++|. .+..+ ...+++|++|++++|.......+..+++|+.|+|++|.+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence 666665432111 13345666666666544 11111 124556666666666511112455566666666666666
Q ss_pred ChhhhhhhhcCCCCCcEEEeccc
Q 009616 287 NDQEFHPLISKFPLLEDLSIISL 309 (531)
Q Consensus 287 ~~~~~~~~l~~~~~L~~L~L~~c 309 (531)
++ ..+..+.++++|+.|+|++|
T Consensus 231 ~~-~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 231 PE-IRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp SE-ECGGGGTTCTTCCEEECTTS
T ss_pred cc-cCcccccCccCCCEEEeCCC
Confidence 53 23344555666666666654
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=6.6e-15 Score=154.07 Aligned_cols=230 Identities=18% Similarity=0.167 Sum_probs=150.9
Q ss_pred CCcEEEEeeecCCCccccC-CccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 135 GVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
++++|+|+. + ....+ |..+..+++|++|+|++|.+.+...++.+++|++|+|++|.+++ +...++|++|
T Consensus 35 ~L~~L~Ls~--n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSG--N--PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL 104 (487)
T ss_dssp GCCEEECCS--S--CCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred CccEEEeeC--C--cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence 688888875 2 22233 45677888888888888888762237788888888888888754 2234888888
Q ss_pred EeeecCCcceeeccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc--ccceeecc-CCCCccEEEEeCCCCCh
Q 009616 214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR--VPRLLDVA-ECPHLRKLVLFLPHFND 288 (531)
Q Consensus 214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~~~-~~~~L~~L~L~~~~~~~ 288 (531)
++++|...+ +....+++|+.|++++|. .... .....+++|++|++++|. +..+..+. .+++|+.|+|++|.+++
T Consensus 105 ~L~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 105 HAANNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp ECCSSCCCC-EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECcCCcCCC-CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 888886544 333456888888888887 3332 233467888888888887 33344454 67888888888888875
Q ss_pred hhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEE
Q 009616 289 QEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLF 368 (531)
Q Consensus 289 ~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l 368 (531)
. +. ...+++|+.|+|++|..-. +. + .+..+++|+.++++.+++.. +|..+..+++|+.+++
T Consensus 184 ~--~~-~~~l~~L~~L~Ls~N~l~~-~~---~-----~~~~l~~L~~L~Ls~N~l~~-------lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 184 V--KG-QVVFAKLKTLDLSSNKLAF-MG---P-----EFQSAAGVTWISLRNNKLVL-------IEKALRFSQNLEHFDL 244 (487)
T ss_dssp E--EC-CCCCTTCCEEECCSSCCCE-EC---G-----GGGGGTTCSEEECTTSCCCE-------ECTTCCCCTTCCEEEC
T ss_pred c--cc-cccCCCCCEEECCCCCCCC-CC---H-----hHcCCCCccEEEecCCcCcc-------cchhhccCCCCCEEEc
Confidence 3 22 3357888888888864211 00 0 12234455555555555432 3555667889999999
Q ss_pred EeeccCChhhhhhHHHHHhhccccceeEEE
Q 009616 369 SNFGDIDTHWYLNLMEFIGAFNQIGELHLS 398 (531)
Q Consensus 369 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~ 398 (531)
++ +... .+.++.++..++.|+.+.+.
T Consensus 245 ~~-N~l~---c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RG-NGFH---CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TT-CCBC---HHHHHHHHTTCHHHHHHHHH
T ss_pred CC-CCCc---CcchHHHHHhCCCCcEEecc
Confidence 85 3333 24556777888888877653
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=1.1e-14 Score=151.27 Aligned_cols=216 Identities=19% Similarity=0.155 Sum_probs=147.3
Q ss_pred CccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-
Q 009616 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL- 224 (531)
Q Consensus 148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l- 224 (531)
.....+|..+. ++|++|+|++|.+.+ +..+.++++|++|+|++|.+... .+..+.++++|++|+|++|......
T Consensus 64 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 64 RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred CCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccCh
Confidence 34566776554 689999999999987 66788999999999999988532 2344788999999999999753322
Q ss_pred -eccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc--ccce-eeccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616 225 -RISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR--VPRL-LDVAECPHLRKLVLFLPHFNDQEFHPLISKF 298 (531)
Q Consensus 225 -~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~--~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 298 (531)
.+.++++|++|++++|. ..++. ....+++|++|++++|. ...+ ..+.++++|+.|+|++|.+++- + .+..+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l 217 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P-NLTPL 217 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C-CCTTC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c-ccccc
Confidence 24568999999999997 33322 23468999999999966 3332 3588999999999999999852 3 36788
Q ss_pred CCCcEEEeccccch---hHHHhcCcccceeccccccchhhhc----ccCCCcceeEeecCCc---C-ceecCCCCCcEEE
Q 009616 299 PLLEDLSIISLETL---ERIMISSNRLMHLEVYNCSGLNRIN----VDAPNLVSFDFEDNPI---P-IVSTNAPCPLNVL 367 (531)
Q Consensus 299 ~~L~~L~L~~c~~l---~~l~~~~~~L~~L~l~~c~~L~~l~----~~~~nL~sl~~~~~~~---p-~~~~~~~~L~~L~ 367 (531)
++|+.|+|++|... .......++|+.|++.++. +..+. -..++|+.+.+.+..+ | ..+..+++|+.|+
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 99999999998531 2222234566777665532 11111 1123444444444333 1 3344566666666
Q ss_pred EEe
Q 009616 368 FSN 370 (531)
Q Consensus 368 l~~ 370 (531)
+++
T Consensus 297 L~~ 299 (452)
T 3zyi_A 297 LHH 299 (452)
T ss_dssp CCS
T ss_pred ccC
Confidence 663
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=2.5e-14 Score=148.24 Aligned_cols=155 Identities=15% Similarity=0.053 Sum_probs=88.0
Q ss_pred CCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEee
Q 009616 161 KLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFT 240 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~ 240 (531)
++|++|++++|.+.+.+.++++++|++|++++|.+.+ ++. ..++|++|++++|...+-..+.++++|+.|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cCC---CcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 4666666666666662246666777777777666532 221 23466777776665433223445677777777766
Q ss_pred c-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhc
Q 009616 241 Y-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMIS 318 (531)
Q Consensus 241 ~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~ 318 (531)
. ..++. ..++|++|++++|. ...| .++.+++|+.|++++|.+++ ++. ..++|+.|++++|.. ..+...
T Consensus 206 ~l~~l~~---~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~l-~~l~~~ 275 (454)
T 1jl5_A 206 SLKKLPD---LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNYL-TDLPEL 275 (454)
T ss_dssp CCSSCCC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSCC-SCCCCC
T ss_pred cCCcCCC---CcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCcc-cccCcc
Confidence 5 22222 23567777777776 4333 46677777777777777663 121 235677777766542 112222
Q ss_pred Ccccceeccccc
Q 009616 319 SNRLMHLEVYNC 330 (531)
Q Consensus 319 ~~~L~~L~l~~c 330 (531)
.++|+.|+++++
T Consensus 276 ~~~L~~L~ls~N 287 (454)
T 1jl5_A 276 PQSLTFLDVSEN 287 (454)
T ss_dssp CTTCCEEECCSS
T ss_pred cCcCCEEECcCC
Confidence 345666666553
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=150.41 Aligned_cols=176 Identities=18% Similarity=0.129 Sum_probs=129.3
Q ss_pred CccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-
Q 009616 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL- 224 (531)
Q Consensus 148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l- 224 (531)
.....+|..+. ++++.|+|++|.+.. +..+.++++|++|+|++|.+... .+..+.++++|++|+|++|......
T Consensus 53 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 53 KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCH
Confidence 45567787665 689999999999987 56788999999999999988432 2234788999999999998653322
Q ss_pred -eccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc--ccc-eeeccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616 225 -RISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR--VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKF 298 (531)
Q Consensus 225 -~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~--~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 298 (531)
.+.++++|+.|++++|. ..++. ....+++|++|++++|. ... +..+.++++|+.|++++|.++. ++ .+..+
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l 206 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPL 206 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTC
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCC
Confidence 24578999999999996 33322 23368999999999966 322 2358899999999999999884 23 36788
Q ss_pred CCCcEEEeccccchh---HHHhcCcccceecccc
Q 009616 299 PLLEDLSIISLETLE---RIMISSNRLMHLEVYN 329 (531)
Q Consensus 299 ~~L~~L~L~~c~~l~---~l~~~~~~L~~L~l~~ 329 (531)
++|+.|+|++|..-. ......++|+.|++.+
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 999999999975311 1112235566666554
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=2.2e-15 Score=157.62 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=115.5
Q ss_pred cCCccccC----CCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616 152 ALPQTIFS----AKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR 225 (531)
Q Consensus 152 ~lp~~l~~----~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~ 225 (531)
.+|..+.. +++|++|+|++|.+.+ +..++++++|++|+|++|.+++. .+ ++.+++|++|+|++|.. ..+.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l-~~l~ 96 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYV-QELL 96 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE--CTTCTTCCEEECCSSEE-EEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc--cccCCCCCEEEecCCcC-CCCC
Confidence 34544443 3589999999999988 45788999999999999988432 22 78899999999999854 3333
Q ss_pred ccccccccEEEEEeec-cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCc
Q 009616 226 ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE 302 (531)
Q Consensus 226 ~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~ 302 (531)
. .++|+.|++++|. .... ...+++|+.|++++|. +..+..++++++|+.|+|++|.+++..+..+..++++|+
T Consensus 97 ~--~~~L~~L~L~~N~l~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 97 V--GPSIETLHAANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp E--CTTCCEEECCSSCCCCEE--ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred C--CCCcCEEECcCCcCCCCC--ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 3 3899999999986 2222 1246889999999998 445667888999999999999998755555555788999
Q ss_pred EEEecccc
Q 009616 303 DLSIISLE 310 (531)
Q Consensus 303 ~L~L~~c~ 310 (531)
.|+|++|.
T Consensus 173 ~L~Ls~N~ 180 (487)
T 3oja_A 173 HLNLQYNF 180 (487)
T ss_dssp EEECTTSC
T ss_pred EEecCCCc
Confidence 99998864
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.52 E-value=1.8e-14 Score=139.97 Aligned_cols=171 Identities=16% Similarity=0.111 Sum_probs=124.8
Q ss_pred cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEE-echHhHHHHHhCCcc
Q 009616 134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRV 209 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~~l~~~~~ 209 (531)
+++++|+++. .....+| ..+..+++|++|+|++|.+.+ +..+.++++|++|++++|. +.. ..+..+..+++
T Consensus 32 ~~l~~L~l~~----n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~-~~~~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGLGR 106 (285)
T ss_dssp TTCSEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CCTTTTTTCTT
T ss_pred CCceEEEeeC----CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc-cCHHHhcCCcC
Confidence 4788888865 2233444 456778899999999998876 5677889999999999886 432 12344678899
Q ss_pred cceEEeeecCCcceee--ccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-ccce-eeccCCCCccEEEEeC
Q 009616 210 LEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFL 283 (531)
Q Consensus 210 Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~L~~ 283 (531)
|++|++++|...+... +.++++|++|++++|. ..+.. ....+++|++|++++|. ...+ ..+..+++|+.|++++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 9999999887544322 4567899999999886 33322 23367899999999987 3333 3478889999999999
Q ss_pred CCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 284 PHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 284 ~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
|.+++ ..+..+.++++|+.|++++|.
T Consensus 187 n~l~~-~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 187 NRVAH-VHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp SCCCE-ECTTTTTTCTTCCEEECCSSC
T ss_pred Ccccc-cCHhHccCcccccEeeCCCCc
Confidence 98885 335567788999999998874
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=1.1e-14 Score=140.38 Aligned_cols=171 Identities=16% Similarity=0.135 Sum_probs=130.3
Q ss_pred HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.+++++|++.. . ....++ .+..+++|++|++++|.+.+.+.+.++++|++|++++|.+++ ..+..++.+++|++
T Consensus 40 l~~L~~L~l~~--~--~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQIIANN--S--DIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEECTT--S--CCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCE
T ss_pred ccceeeeeeCC--C--Cccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCE
Confidence 46889988865 1 222333 477889999999999999886678899999999999998853 23344678999999
Q ss_pred EEeeecCCcceee--ccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCC
Q 009616 213 LSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 213 L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~ 286 (531)
|++++|...+... +.++++|+.|++++|. ..++. ....+++|++|++++|. ...+..++.+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 9999987644322 4568899999999987 33332 23468899999999998 33333478899999999999998
Q ss_pred ChhhhhhhhcCCCCCcEEEecccc
Q 009616 287 NDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 287 ~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
++ ..+..+.++++|+.|++++|.
T Consensus 194 ~~-~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 194 KS-VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SC-CCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-cCHHHHhCCcCCCEEEccCCC
Confidence 84 455667889999999999875
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=2.1e-15 Score=148.63 Aligned_cols=237 Identities=16% Similarity=0.061 Sum_probs=152.6
Q ss_pred CCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHh-------CCcccceEEeeecCCcceee--c--c
Q 009616 159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVR-------ECRVLEDLSFFYCFGLKRLR--I--S 227 (531)
Q Consensus 159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~-------~~~~Le~L~L~~c~~~~~l~--~--~ 227 (531)
..++|++|++++|.+..|..+... |++|+|++|.+....++..+. ++++|++|+|++|...+.++ + .
T Consensus 41 ~~~~L~~l~l~~n~l~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTEADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEEECTTHHHHCCTTCCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred cCCCceeEeecccccccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 346788888888888224433322 888888888873322333333 78999999999997654332 2 5
Q ss_pred ccccccEEEEEeec-cccceeeeeC-----CcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhh--hhhh-hc
Q 009616 228 EAHKLKSLILRFTY-QELESVEIAV-----PSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQE--FHPL-IS 296 (531)
Q Consensus 228 ~l~~L~~L~l~~~~-~~l~~~~~~~-----~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~-l~ 296 (531)
++++|++|++++|. ...+.....+ ++|++|++++|. ...+..++.+++|+.|++++|.+++.. +..+ +.
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 68899999999987 3333322233 899999999998 333467889999999999999987642 2222 27
Q ss_pred CCCCCcEEEeccccch--hHHH----hcCcccceeccccccchhhhcccCCCcceeEeecCCcC-ceecCCCCCcEEEEE
Q 009616 297 KFPLLEDLSIISLETL--ERIM----ISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP-IVSTNAPCPLNVLFS 369 (531)
Q Consensus 297 ~~~~L~~L~L~~c~~l--~~l~----~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p-~~~~~~~~L~~L~l~ 369 (531)
++++|+.|+|++|..- ..+. ...++|+.|++++ +++. +..| ..+..+++|+.|+++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-----------N~l~------~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH-----------NSLR------DAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT-----------SCCC------SSCCCSCCCCCTTCCEEECT
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC-----------CcCC------cccchhhhhhcCCCCEEECC
Confidence 8899999999987532 1221 1224444444443 3331 1112 233346889999998
Q ss_pred eeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 370 NFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 370 ~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
+ +.+.. ... .+. ++|+.|+++.|.... +| .+..+++|++|+|..|
T Consensus 262 ~-N~l~~-ip~----~~~--~~L~~L~Ls~N~l~~---~p-------~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 262 F-TGLKQ-VPK----GLP--AKLSVLDLSYNRLDR---NP-------SPDELPQVGNLSLKGN 306 (312)
T ss_dssp T-SCCSS-CCS----SCC--SEEEEEECCSSCCCS---CC-------CTTTSCEEEEEECTTC
T ss_pred C-CccCh-hhh----hcc--CCceEEECCCCCCCC---Ch-------hHhhCCCCCEEeccCC
Confidence 5 44431 111 111 688888888665433 34 3567788999998887
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=5.7e-15 Score=145.83 Aligned_cols=211 Identities=16% Similarity=0.095 Sum_probs=120.2
Q ss_pred CCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616 159 SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (531)
Q Consensus 159 ~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~ 236 (531)
.+++|++|+|++|.+.+ +..+.++++|++|+|++|.+.+.. + +..+++|++|++++|.. ..+. ..++|+.|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~l-~~l~--~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYV-QELL--VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSEE-EEEE--ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCcc-cccc--CCCCcCEEE
Confidence 34577777777777766 235666777777777777663211 1 56677777777776643 2222 236666666
Q ss_pred EEeecccccee-eeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchh
Q 009616 237 LRFTYQELESV-EIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLE 313 (531)
Q Consensus 237 l~~~~~~l~~~-~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~ 313 (531)
+++|. +..+ ...+++|++|++++|. ...+..++.+++|+.|++++|.+++.....+...+++|+.|+|++|.
T Consensus 106 l~~n~--l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~--- 180 (317)
T 3o53_A 106 AANNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--- 180 (317)
T ss_dssp CCSSC--CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC---
T ss_pred CCCCc--cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc---
Confidence 66664 1111 1134566666666665 22334555666666666666666643333333455666666665532
Q ss_pred HHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccc
Q 009616 314 RIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIG 393 (531)
Q Consensus 314 ~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~ 393 (531)
+..+ + ....+++|++|++++ +.+.... ..+..+++|+
T Consensus 181 -----------------------------l~~~-------~-~~~~l~~L~~L~Ls~-N~l~~l~-----~~~~~l~~L~ 217 (317)
T 3o53_A 181 -----------------------------IYDV-------K-GQVVFAKLKTLDLSS-NKLAFMG-----PEFQSAAGVT 217 (317)
T ss_dssp -----------------------------CCEE-------E-CCCCCTTCCEEECCS-SCCCEEC-----GGGGGGTTCS
T ss_pred -----------------------------Cccc-------c-cccccccCCEEECCC-CcCCcch-----hhhcccCccc
Confidence 1111 0 011255667777764 3333211 1255678888
Q ss_pred eeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616 394 ELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF 432 (531)
Q Consensus 394 ~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~ 432 (531)
.|+++.|... . +| ..+..+++|++|+++.|
T Consensus 218 ~L~L~~N~l~--~-l~------~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 218 WISLRNNKLV--L-IE------KALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EEECTTSCCC--E-EC------TTCCCCTTCCEEECTTC
T ss_pred EEECcCCccc--c-hh------hHhhcCCCCCEEEccCC
Confidence 8888766544 2 66 24566789999999988
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.49 E-value=4.1e-14 Score=152.93 Aligned_cols=170 Identities=16% Similarity=0.088 Sum_probs=93.1
Q ss_pred eCCcccEEEecccc----ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHH----HhcCcc
Q 009616 250 AVPSLQQLELSFSR----VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI----MISSNR 321 (531)
Q Consensus 250 ~~~~L~~L~l~~~~----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l----~~~~~~ 321 (531)
.+++|+.|+++.|. +..+..+..+.+|+.+++..+.... ....+..+++|+.+++..+...... ......
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE--ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhcccccccc--ccccccccccccchhhhhccccccccccccccccc
Confidence 46789999998887 2233445567788888887666543 2233556777888877765432211 112234
Q ss_pred cceeccccccc--h-hhhcccCCCcceeEeecCC-----cCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccc
Q 009616 322 LMHLEVYNCSG--L-NRINVDAPNLVSFDFEDNP-----IPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIG 393 (531)
Q Consensus 322 L~~L~l~~c~~--L-~~l~~~~~nL~sl~~~~~~-----~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~ 393 (531)
++.+++..+.- . ....-..++++.+.+.+.. .|..+..+++|+.|++++ +.+.+. .+..+.++++|+
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~-N~L~~l----~~~~f~~l~~L~ 521 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQL----SPTAFNSLSSLQ 521 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCEE----CTTTTTTCTTCC
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC-CccCCc----ChHHHcCCCCCC
Confidence 44554443210 0 0111122334444443322 244556677888888874 333332 223456777888
Q ss_pred eeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009616 394 ELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL 434 (531)
Q Consensus 394 ~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~ 434 (531)
.|+|+.|.... +|+. .+..+++|++|+|+.|..
T Consensus 522 ~L~Ls~N~l~~---l~~~-----~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 522 VLNMSHNNFFS---LDTF-----PYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp EEECTTSCCCB---CCCG-----GGTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCC---CChh-----HHhCCCCCCEEECCCCcC
Confidence 88777655433 3311 244567788888877743
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=1.2e-14 Score=147.50 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=30.3
Q ss_pred CcccEEEecccc-c--cce---eeccCCCCccEEEEeCCCCChhh----hhhhhcCCCCCcEEEecccc
Q 009616 252 PSLQQLELSFSR-V--PRL---LDVAECPHLRKLVLFLPHFNDQE----FHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 252 ~~L~~L~l~~~~-~--~~~---~~~~~~~~L~~L~L~~~~~~~~~----~~~~l~~~~~L~~L~L~~c~ 310 (531)
++|++|++++|. . ..+ ..+..+++|+.|++++|.++... .+..+..+++|+.|+|++|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 556666665555 1 111 23445556666666666665432 12134455666666666554
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=1.3e-13 Score=135.53 Aligned_cols=166 Identities=15% Similarity=0.173 Sum_probs=130.4
Q ss_pred HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
..++++|++.. .....+| .+..+++|++|+|++|.+.+.+.+..+++|++|+|++|.+.+ ++ .+..+++|++
T Consensus 40 l~~L~~L~l~~----~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFG----TGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTT----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCE
T ss_pred cCCcCEEEeeC----CCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC--ch-hhcCCCCCCE
Confidence 45899999875 2334455 577899999999999999883338899999999999998854 22 3788999999
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE 290 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~ 290 (531)
|++++|.......+.++++|+.|++++|. ..+.. ...+++|++|++++|. ...+ .+..+++|+.|++++|.+++-.
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcCh
Confidence 99999976554446778999999999997 33333 3478999999999998 3333 2889999999999999998532
Q ss_pred hhhhhcCCCCCcEEEeccccc
Q 009616 291 FHPLISKFPLLEDLSIISLET 311 (531)
Q Consensus 291 ~~~~l~~~~~L~~L~L~~c~~ 311 (531)
. +..+++|+.|++++|..
T Consensus 190 --~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 190 --P-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp --G-GGGCTTCCEEECTTSCC
T ss_pred --h-hcCCCCCCEEEccCCcc
Confidence 2 67899999999999753
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=1.4e-13 Score=147.28 Aligned_cols=234 Identities=15% Similarity=0.056 Sum_probs=133.0
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.+++.|+++. + ....+|. .+++|++|+|++|.+.. |. .+++|++|+|++|.++. ++. .+++|+.
T Consensus 61 ~~L~~L~L~~--N--~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPD--N--NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCK 125 (622)
T ss_dssp TTCSEEEECS--C--CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCE
T ss_pred CCCcEEEecC--C--CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCE
Confidence 5889998875 2 3346776 46889999999998877 43 67899999999887743 222 5688888
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE 290 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~ 290 (531)
|++++|... .++. .+++|+.|++++|. ..++ ...++|+.|++++|. ..++ ..+++|+.|++++|.+++
T Consensus 126 L~L~~N~l~-~lp~-~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-- 195 (622)
T 3g06_A 126 LWIFGNQLT-SLPV-LPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-- 195 (622)
T ss_dssp EECCSSCCS-CCCC-CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--
T ss_pred EECCCCCCC-cCCC-CCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC--
Confidence 888887643 2332 24788888888875 2222 234667777777776 3333 445667777777776653
Q ss_pred hhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEe
Q 009616 291 FHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSN 370 (531)
Q Consensus 291 ~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~ 370 (531)
++ ...++|+.|++++|.. ..+....++|+.|+++++ ++..+.-..++|+.+.+++..+......+++|+.|++++
T Consensus 196 l~---~~~~~L~~L~L~~N~l-~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~ 270 (622)
T 3g06_A 196 LP---TLPSELYKLWAYNNRL-TSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYR 270 (622)
T ss_dssp CC---CCCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred CC---CccchhhEEECcCCcc-cccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCC
Confidence 11 1235566666665432 122222345555555543 233333333444444444443321001345566666653
Q ss_pred eccCChhhhhhHHHHHhhccccceeEEEeeeee
Q 009616 371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQ 403 (531)
Q Consensus 371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~ 403 (531)
+.+. .++..+.++++|+.|+|+.|...
T Consensus 271 -N~L~-----~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 271 -NQLT-----RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp -SCCC-----SCCGGGGGSCTTCEEECCSCCCC
T ss_pred -CCCC-----cCCHHHhhccccCEEEecCCCCC
Confidence 3222 11223445556666655555443
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=1.3e-13 Score=135.49 Aligned_cols=145 Identities=18% Similarity=0.182 Sum_probs=103.5
Q ss_pred cCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEE
Q 009616 158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237 (531)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l 237 (531)
..+++|++|++++|.+...+.+..+++|++|+|++|.+.+ ++. +..+++|++|++++|.....-.+..+++|+.|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence 3568999999999998875578889999999999998854 223 7899999999999987544334556778888888
Q ss_pred Eeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 238 RFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 238 ~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
++|. ..++. ...+++|++|++++|. ...+ .++.+++|+.|++++|.+++- .. +.++++|+.|++++|.
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCc
Confidence 8776 33322 2356777777777776 2222 266777777777777777642 22 5667777777777653
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.47 E-value=6.3e-15 Score=145.16 Aligned_cols=149 Identities=21% Similarity=0.102 Sum_probs=80.0
Q ss_pred CCCCccEEEecCCcCCC--CcCC--CCCCccCEEEeeeEEechHhHHHHHhCC-----cccceEEeeecCCccee--ecc
Q 009616 159 SAKLLTSLKLFGCKLEQ--PSHC--ANLQSLKKLSLDEVYVNDQMVQSLVREC-----RVLEDLSFFYCFGLKRL--RIS 227 (531)
Q Consensus 159 ~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~~l~~~l~~~-----~~Le~L~L~~c~~~~~l--~~~ 227 (531)
.+++|++|+|++|.+.+ |..+ +.+++|++|+|++|.+++. +..++.+ ++|++|++++|...+.. .+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 57888888888888875 5544 7788888888888887442 2223333 77778887777653322 233
Q ss_pred ccccccEEEEEeec-cc---cc-eee-eeCCcccEEEecccc-c---cce-eeccCCCCccEEEEeCCCCChhhhhhhhc
Q 009616 228 EAHKLKSLILRFTY-QE---LE-SVE-IAVPSLQQLELSFSR-V---PRL-LDVAECPHLRKLVLFLPHFNDQEFHPLIS 296 (531)
Q Consensus 228 ~l~~L~~L~l~~~~-~~---l~-~~~-~~~~~L~~L~l~~~~-~---~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 296 (531)
++++|+.|++++|. .+ .. .+. ..+++|++|++++|. . ..+ ..+..+++|+.|++++|.+++......+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 45666666666664 11 01 111 234555555555554 1 111 11234455555555555554322112233
Q ss_pred CCCCCcEEEeccc
Q 009616 297 KFPLLEDLSIISL 309 (531)
Q Consensus 297 ~~~~L~~L~L~~c 309 (531)
.+++|+.|+|++|
T Consensus 251 ~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 251 WPSQLNSLNLSFT 263 (312)
T ss_dssp CCTTCCEEECTTS
T ss_pred hcCCCCEEECCCC
Confidence 3455555555543
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.45 E-value=2.2e-13 Score=132.53 Aligned_cols=199 Identities=17% Similarity=0.077 Sum_probs=126.5
Q ss_pred ccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEE
Q 009616 157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL 235 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L 235 (531)
+.+++++++++++++.+.. |..+ .+++++|+|++|.++.. .+..+..+++|++|+|++|..........+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 4456777888888777766 4433 36778888887776432 223466778888888877765333333467788888
Q ss_pred EEEeec-cccceeeeeCCcccEEEecccc-ccc-eeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccch
Q 009616 236 ILRFTY-QELESVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL 312 (531)
Q Consensus 236 ~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l 312 (531)
++++|. ..++.....+++|++|++++|. ... +..++++++|+.|+|++|.++. .....+..+++|+.|+|+++..
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l- 160 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNL- 160 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCC-
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcC-
Confidence 888876 4444444467888888888887 333 3457888888888888888873 4455567788888888887542
Q ss_pred hHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCC
Q 009616 313 ERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDID 375 (531)
Q Consensus 313 ~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~ 375 (531)
..+.. -.+..+++|+.+.++.++++ .+|..+...++|+.+++++ ++..
T Consensus 161 ~~l~~-------~~~~~l~~L~~L~L~~N~l~-------~ip~~~~~~~~L~~l~L~~-Np~~ 208 (290)
T 1p9a_G 161 TELPA-------GLLNGLENLDTLLLQENSLY-------TIPKGFFGSHLLPFAFLHG-NPWL 208 (290)
T ss_dssp SCCCT-------TTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCCCSEEECCS-CCBC
T ss_pred CccCH-------HHhcCcCCCCEEECCCCcCC-------ccChhhcccccCCeEEeCC-CCcc
Confidence 11100 00122344445555554442 2344455567899999985 4443
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=2.3e-13 Score=131.03 Aligned_cols=169 Identities=20% Similarity=0.148 Sum_probs=84.0
Q ss_pred CCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC-Cc-CCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616 135 GVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ-PS-HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE 211 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le 211 (531)
++++|+++. .....+|. .+..+++|++|+|++|.+.. +. .+.++++|++|++++|.+..- ....+..+++|+
T Consensus 38 ~l~~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 112 (270)
T 2o6q_A 38 DTKKLDLQS----NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLA 112 (270)
T ss_dssp TCSEEECCS----SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCC
T ss_pred CCCEEECcC----CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCC
Confidence 455555543 11223332 44455666666666665555 22 234566666666666655321 122345566666
Q ss_pred eEEeeecCCccee--eccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-ccc-eeeccCCCCccEEEEeCCC
Q 009616 212 DLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPH 285 (531)
Q Consensus 212 ~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~~ 285 (531)
+|++++|...... .+.++++|+.|++++|. ..++. ....+++|++|++++|. ... +..+..+++|+.|++++|.
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 6666655432221 12345566666666654 22221 12245566666666655 222 2235556666666666665
Q ss_pred CChhhhhhhhcCCCCCcEEEeccc
Q 009616 286 FNDQEFHPLISKFPLLEDLSIISL 309 (531)
Q Consensus 286 ~~~~~~~~~l~~~~~L~~L~L~~c 309 (531)
++. .....+..+++|+.|+|+++
T Consensus 193 l~~-~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 193 LKR-VPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CSC-CCTTTTTTCTTCCEEECCSS
T ss_pred CCc-CCHHHhccccCCCEEEecCC
Confidence 552 23334455566666666554
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=2.5e-13 Score=130.70 Aligned_cols=168 Identities=18% Similarity=0.151 Sum_probs=125.3
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
+.+.++++. .....+|..+. ++|++|+|++|.+.. +..+.++++|++|+|++|.++. .....+..+++|++
T Consensus 17 ~~~~l~~~~----~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSS----KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTT----SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCE
T ss_pred CCCEEEccC----CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCE
Confidence 456666643 33456776554 689999999999987 3468899999999999998843 22334578999999
Q ss_pred EEeeecCCccee--eccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc-ccce-eeccCCCCccEEEEeCCCC
Q 009616 213 LSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 213 L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~L~~~~~ 286 (531)
|++++|...... .+.++++|++|++++|. ..+. .....+++|++|++++|. ...+ ..++.+++|+.|++++|.+
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 999998753321 23467899999999987 3332 223468999999999998 3333 3478899999999999988
Q ss_pred ChhhhhhhhcCCCCCcEEEecccc
Q 009616 287 NDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 287 ~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
+. .....+.++++|+.|+|++|.
T Consensus 170 ~~-~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 170 KR-VPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp SC-CCTTTTTTCTTCCEEECCSSC
T ss_pred cE-eChhHhccCCCcCEEECCCCc
Confidence 84 344557788999999999874
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.43 E-value=1.9e-13 Score=129.02 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=75.0
Q ss_pred CccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEE-echHhHHHHHhCCcccceEEeeecCCcceee---ccccccccEE
Q 009616 162 LLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSL 235 (531)
Q Consensus 162 ~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~-~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~---~~~l~~L~~L 235 (531)
+|++|++++|.+.+ + ..+.++++|++|++++|. ++. ..+..+.++++|++|++++|..+..+. +.++++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666666655 2 245556666666666664 321 111124556666666666633333332 2245666666
Q ss_pred EEEeec-cccceeeeeCCccc---EEEeccc-c-ccce-eeccCCCCcc-EEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616 236 ILRFTY-QELESVEIAVPSLQ---QLELSFS-R-VPRL-LDVAECPHLR-KLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (531)
Q Consensus 236 ~l~~~~-~~l~~~~~~~~~L~---~L~l~~~-~-~~~~-~~~~~~~~L~-~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (531)
++++|. ..++. ...+++|+ +|++++| . ...+ ..+.++++|+ .|++++|.++ ......+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 666665 23332 22444555 6666666 4 2222 2355666666 6666666665 222233333 566666666
Q ss_pred ccc
Q 009616 308 SLE 310 (531)
Q Consensus 308 ~c~ 310 (531)
+|.
T Consensus 188 ~n~ 190 (239)
T 2xwt_C 188 KNK 190 (239)
T ss_dssp TCT
T ss_pred CCC
Confidence 653
No 80
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=138.29 Aligned_cols=171 Identities=17% Similarity=0.153 Sum_probs=124.3
Q ss_pred cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
+++++|+++. .....+|. .+..+++|++|++++|.+.+ +..+.++++|++|+|++|.++. .....++++++|
T Consensus 52 ~~L~~L~l~~----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSN----NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTT----SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTC
T ss_pred ccCcEEECCC----CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccC
Confidence 4788888865 22344554 67788999999999998877 4567888999999999988853 234457889999
Q ss_pred ceEEeeecCCccee---eccccccccEEEEEeec--cccc-eeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEe
Q 009616 211 EDLSFFYCFGLKRL---RISEAHKLKSLILRFTY--QELE-SVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLF 282 (531)
Q Consensus 211 e~L~L~~c~~~~~l---~~~~l~~L~~L~l~~~~--~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~ 282 (531)
++|++++|...... .+.++++|++|++++|. ..+. .....+++|++|++++|. +..+..++.+++|+.|+++
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 99999888653321 24567899999999884 2222 223367889999999887 3345678888889999998
Q ss_pred CCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 283 LPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
+|.++. .....+..+++|+.|++++|.
T Consensus 207 ~n~l~~-~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 207 MKQHIL-LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CSCSTT-HHHHHHHHTTTEEEEEEESCB
T ss_pred CCcccc-chhhhhhhcccccEEECCCCc
Confidence 888763 344455567888888888764
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=2.6e-13 Score=130.95 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=108.0
Q ss_pred CccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-
Q 009616 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL- 224 (531)
Q Consensus 148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l- 224 (531)
.....+|..+. ++|++|++++|.+.+ +..+.++++|++|++++|.+... .+..+..+++|++|++++|...+..
T Consensus 17 ~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 17 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccCh
Confidence 34556776553 579999999998887 34778899999999999987431 2234678899999999988753322
Q ss_pred -eccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-c--cceeeccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616 225 -RISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-V--PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKF 298 (531)
Q Consensus 225 -~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 298 (531)
.+.++++|++|++++|. ..+.. ....+++|++|++++|. . ..+..++.+++|+.|++++|.+++. ....+..+
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l 172 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVL 172 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhh
Confidence 24567888888888776 33332 23367788888888887 2 2466778888888888888887742 22223333
Q ss_pred CCCc----EEEecccc
Q 009616 299 PLLE----DLSIISLE 310 (531)
Q Consensus 299 ~~L~----~L~L~~c~ 310 (531)
++|+ .|+++++.
T Consensus 173 ~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNP 188 (276)
T ss_dssp HTCTTCCEEEECCSSC
T ss_pred hhccccceeeecCCCc
Confidence 3444 67776653
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.42 E-value=2.6e-13 Score=140.60 Aligned_cols=269 Identities=15% Similarity=0.088 Sum_probs=168.6
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.++++|+++. + ....+| .+..+++|++|++++|.+.+ |.. .++|++|++++|.+.+ ++. ++++++|++
T Consensus 131 ~~L~~L~L~~--n--~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSN--N--QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE--LPE-LQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCS--S--CCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS--CCC-CTTCTTCCE
T ss_pred CCCCEEECcC--C--CCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc--Ccc-ccCCCCCCE
Confidence 5899999976 2 334578 58899999999999999887 432 4699999999998854 343 789999999
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE 290 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~ 290 (531)
|++++|...+ ++. ..++|+.|++++|. ..++. ...+++|++|++++|. ...+. ..++|+.|++++|.+++
T Consensus 200 L~l~~N~l~~-l~~-~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-- 271 (454)
T 1jl5_A 200 IYADNNSLKK-LPD-LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-- 271 (454)
T ss_dssp EECCSSCCSS-CCC-CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC--
T ss_pred EECCCCcCCc-CCC-CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc--
Confidence 9999997644 221 13689999999997 44443 3478999999999998 33332 34789999999998875
Q ss_pred hhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEe
Q 009616 291 FHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSN 370 (531)
Q Consensus 291 ~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~ 370 (531)
++. ..++|+.|++++|.. ..+....++|+.|++.++. +..+.--.++|+.+.+.+..+......+++|+.|++++
T Consensus 272 l~~---~~~~L~~L~ls~N~l-~~l~~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~ 346 (454)
T 1jl5_A 272 LPE---LPQSLTFLDVSENIF-SGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASF 346 (454)
T ss_dssp CCC---CCTTCCEEECCSSCC-SEESCCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred cCc---ccCcCCEEECcCCcc-CcccCcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEECCC
Confidence 222 347899999998753 2222223678888887653 22222111366666666554431111257899999985
Q ss_pred eccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCC--------CCCcccceEEEEEeeecc
Q 009616 371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSL--------PLQVESLSLFMESFSLYM 436 (531)
Q Consensus 371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~--------~~~~~L~~L~L~~~~~~~ 436 (531)
+.... ++. .+++|+.|+++.|...+.-.+|..+... .. ..+++|++|+++.|...+
T Consensus 347 -N~l~~-----lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L-~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 347 -NHLAE-----VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL-RMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -SCCSC-----CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE-ECCC------------------------
T ss_pred -Ccccc-----ccc---hhhhccEEECCCCCCCcCCCChHHHHhh-hhcccccccccccCcCCEEECCCCcCCc
Confidence 44432 111 4688999999877766521266333221 00 112789999999885543
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=135.70 Aligned_cols=181 Identities=21% Similarity=0.145 Sum_probs=130.8
Q ss_pred hhHHHHHHHHHHcCCcEEEEeeecCCCccccCCccc--cCCCCccEEEecCCcCCC--C----cCCCCCCccCEEEeeeE
Q 009616 122 PLFDKWVELAMENGVKELDFEVITDKNSVNALPQTI--FSAKLLTSLKLFGCKLEQ--P----SHCANLQSLKKLSLDEV 193 (531)
Q Consensus 122 ~~~~~wl~~~~~~~l~~L~L~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~L~~~ 193 (531)
..+..........++++|+++. .......|..+ ..+++|++|+|++|.+.+ + ..+..+++|++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~L~~L~l~~---n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 79 QLLVGALRVLAYSRLKELTLED---LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA 155 (310)
T ss_dssp HHHHHHHHHHHHSCCCEEEEES---CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred HHHHHHHHhcccCceeEEEeeC---CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence 4455555555567899999986 23334566666 778999999999998876 2 22346899999999999
Q ss_pred EechHhHHHHHhCCcccceEEeeecCCcce------eeccccccccEEEEEeec-ccccee----eeeCCcccEEEeccc
Q 009616 194 YVNDQMVQSLVRECRVLEDLSFFYCFGLKR------LRISEAHKLKSLILRFTY-QELESV----EIAVPSLQQLELSFS 262 (531)
Q Consensus 194 ~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~------l~~~~l~~L~~L~l~~~~-~~l~~~----~~~~~~L~~L~l~~~ 262 (531)
.+.. ..+..++.+++|++|+|++|...+. ..+..+++|++|++++|. ..++.. ...+++|++|++++|
T Consensus 156 ~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 156 HSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp SSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred Ccch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 8843 2334467899999999999986442 223467899999999997 322332 236799999999999
Q ss_pred c--ccceeeccCC---CCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 263 R--VPRLLDVAEC---PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 263 ~--~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
. ...|..++.+ ++|+.|+|++|.++ .. +..+ +++|+.|+|++|.
T Consensus 235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~l-p~~~--~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QV-PKGL--PAKLRVLDLSSNR 283 (310)
T ss_dssp CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SC-CSCC--CSCCSCEECCSCC
T ss_pred CCCccchhhHHhccCcCcCCEEECCCCCCC-ch-hhhh--cCCCCEEECCCCc
Confidence 8 3335556666 69999999999998 33 3323 3799999999865
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.40 E-value=3.8e-13 Score=129.58 Aligned_cols=150 Identities=16% Similarity=0.104 Sum_probs=119.9
Q ss_pred ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccE
Q 009616 157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKS 234 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~ 234 (531)
...+++|+.|++++|.+...+.+..+++|++|++++|.+.+ ++ .+..+++|++|++++|...+... +.++++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34578999999999998876678899999999999999854 22 47899999999999997543322 457899999
Q ss_pred EEEEeec-cccce-eeeeCCcccEEEecccc-c-cceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 235 LILRFTY-QELES-VEIAVPSLQQLELSFSR-V-PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 235 L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
|++++|. ..++. ....+++|++|++++|. . ..+..++.+++|+.|++++|.+++ ..+..+.++++|+.|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCc
Confidence 9999997 33322 23468999999999998 3 333347899999999999999984 455667889999999999875
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=1.6e-14 Score=146.67 Aligned_cols=248 Identities=10% Similarity=0.120 Sum_probs=130.0
Q ss_pred cCCccccCCCCccEEEecCCcCCC--C----cCCCCCCccCEEEeeeEEe---chH------hHHHHHhCCcccceEEee
Q 009616 152 ALPQTIFSAKLLTSLKLFGCKLEQ--P----SHCANLQSLKKLSLDEVYV---NDQ------MVQSLVRECRVLEDLSFF 216 (531)
Q Consensus 152 ~lp~~l~~~~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~L~~~~~---~~~------~l~~~l~~~~~Le~L~L~ 216 (531)
.++..+..+++|++|+|++|.+.. + ..+..+++|++|+|++|.+ ++. .+...+..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344455555666666666665543 1 1234455666666655422 111 111123445555555555
Q ss_pred ecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc-c-c----ceeeccCC---------CCccEEEE
Q 009616 217 YCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-V-P----RLLDVAEC---------PHLRKLVL 281 (531)
Q Consensus 217 ~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~----~~~~~~~~---------~~L~~L~L 281 (531)
+|.....- + ..++.....+++|++|++++|. . . .+..+..+ ++|+.|++
T Consensus 103 ~n~l~~~~-~---------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 103 DNAFGPTA-Q---------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp SCCCCTTT-H---------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred CCcCCHHH-H---------------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 54432100 0 0011122345667777776665 1 1 11122333 89999999
Q ss_pred eCCCCChhhhh---hhhcCCCCCcEEEeccccchh----HHH----hcCcccceeccccccchhhhcccCCCcceeEeec
Q 009616 282 FLPHFNDQEFH---PLISKFPLLEDLSIISLETLE----RIM----ISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFED 350 (531)
Q Consensus 282 ~~~~~~~~~~~---~~l~~~~~L~~L~L~~c~~l~----~l~----~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~ 350 (531)
++|.+++..++ ..+..+++|+.|+|++|..-. .+. ..+++|+.|++.++. +.... .
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g------------~ 233 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLG------------S 233 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHH------------H
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHH------------H
Confidence 99999865555 456688999999999985321 111 123444444444432 10000 0
Q ss_pred CCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhh--ccccceeEEEeeeeeeee--eeccccccCCCCCCCcccce
Q 009616 351 NPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGA--FNQIGELHLSLNYKQVLF--NIDEFRSCHPSLPLQVESLS 426 (531)
Q Consensus 351 ~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~--l~~L~~L~L~~~~~~~~~--~ip~~~~~~~~~~~~~~L~~ 426 (531)
..+|..+..+++|+.|++++ +.+.......++..+.. +++|+.|+|+.|...... .+|..+. ..+++|++
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-----~~l~~L~~ 307 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLND-CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-----EKMPDLLF 307 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTT-CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-----HHCTTCCE
T ss_pred HHHHHHHccCCCcCEEECCC-CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-----hcCCCceE
Confidence 11233445677888888875 55555444445555543 788888888876655410 0442221 23578888
Q ss_pred EEEEEeee
Q 009616 427 LFMESFSL 434 (531)
Q Consensus 427 L~L~~~~~ 434 (531)
|++..|..
T Consensus 308 L~l~~N~l 315 (386)
T 2ca6_A 308 LELNGNRF 315 (386)
T ss_dssp EECTTSBS
T ss_pred EEccCCcC
Confidence 88887743
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=4.3e-13 Score=127.59 Aligned_cols=168 Identities=18% Similarity=0.146 Sum_probs=126.9
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
+.+++++.. .....+|..+. ++|++|+|++|.+.+ +..+.++++|++|+|++|.+.+. .+..+..+++|++
T Consensus 15 ~~~~l~~~~----~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQG----KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGT 87 (251)
T ss_dssp GGTEEECTT----CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred CCeEEecCC----CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCE
Confidence 455666543 34567777655 689999999999987 55688899999999999988542 3344678999999
Q ss_pred EEeeecCCccee--eccccccccEEEEEeec-ccccee-eeeCCcccEEEecccc-ccce-eeccCCCCccEEEEeCCCC
Q 009616 213 LSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHF 286 (531)
Q Consensus 213 L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~~~-~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~L~~~~~ 286 (531)
|+|++|...... .+.++++|++|++++|. ..++.. ...+++|++|++++|. ...+ ..++.+++|+.|+|++|.+
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 999998764322 23467899999999987 333332 3468899999999998 3333 3588899999999999998
Q ss_pred ChhhhhhhhcCCCCCcEEEecccc
Q 009616 287 NDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 287 ~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
+. ..+..+..+++|+.|+|+++.
T Consensus 168 ~~-~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 168 QS-VPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SC-CCTTTTTTCTTCCEEECCSCC
T ss_pred Cc-cCHHHHhCCCCCCEEEeeCCc
Confidence 84 444567788999999999865
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.39 E-value=5.7e-13 Score=125.70 Aligned_cols=169 Identities=10% Similarity=0.002 Sum_probs=87.2
Q ss_pred CCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCc-CCC--CcCCCCCCccCEEEeee-EEechHhHHHHHhCCcc
Q 009616 135 GVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCK-LEQ--PSHCANLQSLKKLSLDE-VYVNDQMVQSLVRECRV 209 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-l~~--~~~~~~l~~L~~L~L~~-~~~~~~~l~~~l~~~~~ 209 (531)
++++|+++. .....+|. .+..+++|++|++++|. +.. +..+.++++|++|++++ |.+..- .+..+.++++
T Consensus 32 ~l~~L~l~~----n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIE----THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPL 106 (239)
T ss_dssp TCCEEEEES----CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTT
T ss_pred cccEEEEeC----CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCC
Confidence 566666654 12233443 44456666666666665 544 23455666666666665 544221 1123455666
Q ss_pred cceEEeeecCCcceeecccccccc---EEEEEee-c-ccccee-eeeCCccc-EEEecccc-ccceeeccCCCCccEEEE
Q 009616 210 LEDLSFFYCFGLKRLRISEAHKLK---SLILRFT-Y-QELESV-EIAVPSLQ-QLELSFSR-VPRLLDVAECPHLRKLVL 281 (531)
Q Consensus 210 Le~L~L~~c~~~~~l~~~~l~~L~---~L~l~~~-~-~~l~~~-~~~~~~L~-~L~l~~~~-~~~~~~~~~~~~L~~L~L 281 (531)
|++|++++|...+-..+..+++|+ .|++++| . ..++.- ...+++|+ +|++++|. ..++......++|+.|++
T Consensus 107 L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp CCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred CCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence 666666666543321233445555 6666666 3 222211 22456666 66666665 322222222256666666
Q ss_pred eCCC-CChhhhhhhhcCC-CCCcEEEeccc
Q 009616 282 FLPH-FNDQEFHPLISKF-PLLEDLSIISL 309 (531)
Q Consensus 282 ~~~~-~~~~~~~~~l~~~-~~L~~L~L~~c 309 (531)
++|. ++ ......+.++ ++|+.|+++++
T Consensus 187 ~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 187 NKNKYLT-VIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TTCTTCC-EECTTTTTTCSBCCSEEECTTC
T ss_pred CCCCCcc-cCCHHHhhccccCCcEEECCCC
Confidence 6663 55 2233445555 66666666654
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=2.5e-13 Score=131.10 Aligned_cols=170 Identities=21% Similarity=0.173 Sum_probs=115.3
Q ss_pred cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.++++|+++. .....++. .+..+++|++|++++|.+.. +..+.++++|++|+|++|.+... .+..+.++++|
T Consensus 28 ~~l~~L~ls~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTT----CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTC
T ss_pred CCccEEECCC----CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccc
Confidence 3688888764 22334444 66778889999999888876 34677888999999988877432 22346778889
Q ss_pred ceEEeeecCCcce--eeccccccccEEEEEeec-cc--cceeeeeCCcccEEEecccc-c-cceeeccCCCCcc----EE
Q 009616 211 EDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QE--LESVEIAVPSLQQLELSFSR-V-PRLLDVAECPHLR----KL 279 (531)
Q Consensus 211 e~L~L~~c~~~~~--l~~~~l~~L~~L~l~~~~-~~--l~~~~~~~~~L~~L~l~~~~-~-~~~~~~~~~~~L~----~L 279 (531)
++|++++|..... ..+.++++|+.|++++|. .. ++.....+++|++|++++|. . ..+..+..+++|+ .|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 9999888865332 345677889999988886 22 33444567888999998887 2 2233455555555 78
Q ss_pred EEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 280 VLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 280 ~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
++++|.+++. ....+ ...+|+.|+|++|.
T Consensus 183 ~ls~n~l~~~-~~~~~-~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 183 DLSLNPMNFI-QPGAF-KEIRLKELALDTNQ 211 (276)
T ss_dssp ECCSSCCCEE-CTTSS-CSCCEEEEECCSSC
T ss_pred ecCCCccccc-Ccccc-CCCcccEEECCCCc
Confidence 8888887742 22222 34478888888765
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.38 E-value=6.2e-13 Score=129.32 Aligned_cols=166 Identities=20% Similarity=0.111 Sum_probs=118.7
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
+++++++.. .....+|..+. +++++|+|++|.+.+ +..+.++++|++|+|++|.++.- +. .+.+++|++
T Consensus 11 ~l~~l~~~~----~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~ 81 (290)
T 1p9a_G 11 SHLEVNCDK----RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QV-DGTLPVLGT 81 (290)
T ss_dssp TCCEEECTT----SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--EC-CSCCTTCCE
T ss_pred CccEEECCC----CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc--cC-CCCCCcCCE
Confidence 566666643 34456776654 688899999998877 55678889999999998887431 11 267889999
Q ss_pred EEeeecCCcce-eeccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc-cc-ceeeccCCCCccEEEEeCCCCC
Q 009616 213 LSFFYCFGLKR-LRISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFN 287 (531)
Q Consensus 213 L~L~~c~~~~~-l~~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~L~~~~~~ 287 (531)
|++++|....- ..+.++++|+.|++++|. ..++ .....+++|++|++++|. .. .+..+..+++|+.|+|++|.++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99988865321 123467889999998886 3333 223467889999999888 33 3334678889999999988887
Q ss_pred hhhhhhhhcCCCCCcEEEecccc
Q 009616 288 DQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 288 ~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
......+.++++|+.|+|+++.
T Consensus 162 -~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 162 -ELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccCHHHhcCcCCCCEEECCCCc
Confidence 3445566788899999998864
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=2e-12 Score=125.74 Aligned_cols=165 Identities=24% Similarity=0.234 Sum_probs=128.1
Q ss_pred HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
..+++.|+++. .....+| .+..+++|++|+|++|.+.+.+.+.++++|++|++++|.+++ ++. +..+++|++
T Consensus 45 l~~L~~L~l~~----~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANN----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTT----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCE
T ss_pred cCcccEEEccC----CCcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCE
Confidence 35799998865 2233454 377889999999999999883338899999999999998854 333 788999999
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE 290 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~ 290 (531)
|++++|.....-.+..+++|+.|++++|. ..+ .....+++|+.|++++|. ...+ .+..+++|+.|++++|.+++
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~L~~N~i~~-- 192 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD-- 192 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB--
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch-hhcCCCccCEEECCCCcCCC--
Confidence 99999976443345678999999999987 333 233468999999999998 3333 28899999999999999885
Q ss_pred hhhhhcCCCCCcEEEecccc
Q 009616 291 FHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 291 ~~~~l~~~~~L~~L~L~~c~ 310 (531)
++. +..+++|+.|+++++.
T Consensus 193 l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 193 LRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGG-GTTCTTCSEEEEEEEE
T ss_pred Chh-hccCCCCCEEECcCCc
Confidence 233 6789999999999864
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=3.7e-13 Score=135.34 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=87.0
Q ss_pred CCccccCCCCccEEEecCCcCCC-C-----cCCCCCC-ccCEEEeeeEEechH---hHHHHHhCC-cccceEEeeecCCc
Q 009616 153 LPQTIFSAKLLTSLKLFGCKLEQ-P-----SHCANLQ-SLKKLSLDEVYVNDQ---MVQSLVREC-RVLEDLSFFYCFGL 221 (531)
Q Consensus 153 lp~~l~~~~~L~~L~L~~~~l~~-~-----~~~~~l~-~L~~L~L~~~~~~~~---~l~~~l~~~-~~Le~L~L~~c~~~ 221 (531)
+|..+...++|++|+|++|.+.+ + ..+..++ +|++|+|++|.+++. .+...+..+ ++|++|+|++|...
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 34444444568888888887765 2 3445677 788888888877433 233334443 78888888887643
Q ss_pred ceee------cccc-ccccEEEEEeec-cccce--ee---ee-CCcccEEEecccc-c-----cceeeccCCC-CccEEE
Q 009616 222 KRLR------ISEA-HKLKSLILRFTY-QELES--VE---IA-VPSLQQLELSFSR-V-----PRLLDVAECP-HLRKLV 280 (531)
Q Consensus 222 ~~l~------~~~l-~~L~~L~l~~~~-~~l~~--~~---~~-~~~L~~L~l~~~~-~-----~~~~~~~~~~-~L~~L~ 280 (531)
.... +..+ ++|++|++++|. ..... +. .. .++|++|++++|. . ..+..+...+ +|+.|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 2211 2223 567777777765 11111 10 01 2467777776665 2 1111233343 667777
Q ss_pred EeCCCCChhh---hhhhhcCC-CCCcEEEecccc
Q 009616 281 LFLPHFNDQE---FHPLISKF-PLLEDLSIISLE 310 (531)
Q Consensus 281 L~~~~~~~~~---~~~~l~~~-~~L~~L~L~~c~ 310 (531)
|++|.+++.. +...+..+ ++|+.|+|++|.
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 7666665422 22334444 366666666654
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=2.5e-12 Score=125.11 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=118.9
Q ss_pred cCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEE
Q 009616 158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237 (531)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l 237 (531)
..+++|++|++++|.+...+.+..+++|++|++++|.+++. +. ++.+++|++|++++|.....-.+..+++|+.|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 45789999999999988755688899999999999998542 22 7899999999999997654444667899999999
Q ss_pred Eeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 238 RFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 238 ~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
++|. ..+. ....+++|++|++++|.......++.+++|+.|++++|.+++.. . +..+++|+.|++++|.
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCCc
Confidence 9997 3332 23468999999999998222257889999999999999998632 2 7889999999999974
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=2.8e-12 Score=117.14 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=73.8
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
.++++|+++. + ....+| .+..+++|++|++++|.+..++.+..+++|++|++++|.+++..+. .++.+++|++|
T Consensus 44 ~~L~~L~l~~--n--~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLAN--I--NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEES--S--CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEE
T ss_pred CCccEEeccC--C--CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEE
Confidence 3556666554 1 122344 3555556666666666444444455555566666655555332111 23445555555
Q ss_pred EeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhh
Q 009616 214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEF 291 (531)
Q Consensus 214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 291 (531)
++++|..... .......+++|++|++++|. ...+ .+..+++|+.|++++|.+++-
T Consensus 118 ~Ls~n~i~~~--------------------~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-- 174 (197)
T 4ezg_A 118 DISHSAHDDS--------------------ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-- 174 (197)
T ss_dssp ECCSSBCBGG--------------------GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC--
T ss_pred EecCCccCcH--------------------hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh--
Confidence 5555543221 11111234555555555554 2222 456666677777766666641
Q ss_pred hhhhcCCCCCcEEEeccc
Q 009616 292 HPLISKFPLLEDLSIISL 309 (531)
Q Consensus 292 ~~~l~~~~~L~~L~L~~c 309 (531)
. .+..+++|+.|+++++
T Consensus 175 ~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp T-TGGGCSSCCEEEECBC
T ss_pred H-HhccCCCCCEEEeeCc
Confidence 1 3556667777777664
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=128.58 Aligned_cols=151 Identities=19% Similarity=0.046 Sum_probs=95.9
Q ss_pred CCCCccEEEecCCcCCC--CcCC--CCCCccCEEEeeeEEechHh--HH-HHHhCCcccceEEeeecCCccee--ecccc
Q 009616 159 SAKLLTSLKLFGCKLEQ--PSHC--ANLQSLKKLSLDEVYVNDQM--VQ-SLVRECRVLEDLSFFYCFGLKRL--RISEA 229 (531)
Q Consensus 159 ~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~~--l~-~~l~~~~~Le~L~L~~c~~~~~l--~~~~l 229 (531)
.+++|++|++++|.+.+ +..+ ..+++|++|+|++|.+++.. +. ..+..+++|++|+|++|...+.. .+.++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34679999999998876 5555 78999999999999885321 11 22457889999999888764332 23466
Q ss_pred ccccEEEEEeec-cc---cce-e-eeeCCcccEEEecccc-cccee----eccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616 230 HKLKSLILRFTY-QE---LES-V-EIAVPSLQQLELSFSR-VPRLL----DVAECPHLRKLVLFLPHFNDQEFHPLISKF 298 (531)
Q Consensus 230 ~~L~~L~l~~~~-~~---l~~-~-~~~~~~L~~L~l~~~~-~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 298 (531)
++|++|++++|. .+ +.. . ...+++|++|++++|. ...+. .++.+++|+.|+|++|.+++..+ ..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-PSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-SCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch-hhHHhc
Confidence 788888888775 11 111 1 1356677777777776 22121 13566777777777777664322 222333
Q ss_pred ---CCCcEEEecccc
Q 009616 299 ---PLLEDLSIISLE 310 (531)
Q Consensus 299 ---~~L~~L~L~~c~ 310 (531)
++|++|+|++|.
T Consensus 248 ~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 248 MWSSALNSLNLSFAG 262 (310)
T ss_dssp CCCTTCCCEECCSSC
T ss_pred cCcCcCCEEECCCCC
Confidence 567777776653
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=3.2e-12 Score=116.78 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=88.2
Q ss_pred cCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEE
Q 009616 158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237 (531)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l 237 (531)
..+++|++|++++|.+...+++..+++|++|++++|.+.. ++ .++.+++|++|++++|....
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~n~l~~--------------- 102 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YN-PISGLSNLERLRIMGKDVTS--------------- 102 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--CG-GGTTCTTCCEEEEECTTCBG---------------
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--ch-hhhcCCCCCEEEeECCccCc---------------
Confidence 4567888888888887763367777888888888775532 11 24556666666666654322
Q ss_pred EeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCC-CChhhhhhhhcCCCCCcEEEecccc
Q 009616 238 RFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 238 ~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
........+++|++|++++|. ...+..++.+++|+.|++++|. ++. ++ .+..+++|+.|++++|.
T Consensus 103 -----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 103 -----DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp -----GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBC
T ss_pred -----ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCC
Confidence 011122246778888888877 3346678999999999999998 664 23 47889999999999975
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=3.2e-12 Score=136.67 Aligned_cols=166 Identities=22% Similarity=0.206 Sum_probs=130.6
Q ss_pred HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
..+++.|++.. .....+| .+..+++|+.|+|++|.+.+.+.+..+++|+.|+|++|.+.+ ++ .+..+++|+.
T Consensus 42 L~~L~~L~l~~----n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANN----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTT----CCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCE
T ss_pred CCCCCEEECcC----CCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCE
Confidence 35788888764 2234455 578899999999999999883348899999999999998854 23 3788999999
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE 290 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~ 290 (531)
|+|++|.....-.+..+++|+.|++++|. ..+ .....+++|+.|++++|. ...+ .+..+++|+.|+|++|.+++-
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~l- 190 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL- 190 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBC-
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch-hhccCCCCCEEECcCCCCCCC-
Confidence 99999986554446678999999999997 333 233478999999999998 3222 289999999999999999862
Q ss_pred hhhhhcCCCCCcEEEeccccc
Q 009616 291 FHPLISKFPLLEDLSIISLET 311 (531)
Q Consensus 291 ~~~~l~~~~~L~~L~L~~c~~ 311 (531)
..+..+++|+.|+|++|..
T Consensus 191 --~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEE
T ss_pred --hHHccCCCCCEEEccCCcC
Confidence 3477899999999998753
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=1e-12 Score=132.05 Aligned_cols=253 Identities=9% Similarity=0.041 Sum_probs=153.3
Q ss_pred EEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHh---HHHHHhCCc-ccceEEeeecCCccee--eccc-----ccc
Q 009616 165 SLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQM---VQSLVRECR-VLEDLSFFYCFGLKRL--RISE-----AHK 231 (531)
Q Consensus 165 ~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~---l~~~l~~~~-~Le~L~L~~c~~~~~l--~~~~-----l~~ 231 (531)
.++++.+.+.+ |......++|++|+|++|.+++.. +...+..++ +|++|+|++|...... .+.. +++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888887 444445566999999999985433 335577888 9999999999653321 1222 289
Q ss_pred ccEEEEEeec-cccc-e-e---eeeC-CcccEEEecccc-ccce-ee----ccC-CCCccEEEEeCCCCChh---hhhhh
Q 009616 232 LKSLILRFTY-QELE-S-V---EIAV-PSLQQLELSFSR-VPRL-LD----VAE-CPHLRKLVLFLPHFNDQ---EFHPL 294 (531)
Q Consensus 232 L~~L~l~~~~-~~l~-~-~---~~~~-~~L~~L~l~~~~-~~~~-~~----~~~-~~~L~~L~L~~~~~~~~---~~~~~ 294 (531)
|++|++++|. .... . + .... ++|++|++++|. ...+ .. +.. .++|+.|+|++|.+++. .+...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999997 2111 1 1 1123 799999999998 2222 12 334 36899999999988853 33344
Q ss_pred hcCCC-CCcEEEeccccchh-------HHHhcC-cccceeccccccchhhhcccCCCcceeEeecCCcCceecC-CCCCc
Q 009616 295 ISKFP-LLEDLSIISLETLE-------RIMISS-NRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTN-APCPL 364 (531)
Q Consensus 295 l~~~~-~L~~L~L~~c~~l~-------~l~~~~-~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~-~~~L~ 364 (531)
+..++ +|+.|+|++|..-. ...... .+|+.|+++++. +.... ...++..+.. .++|+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~------------~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKS------------YAELAYIFSSIPNHVV 228 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSC------------HHHHHHHHHHSCTTCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhH------------HHHHHHHHhcCCCCce
Confidence 55565 89999999885311 111122 355555555443 11100 0001222222 35788
Q ss_pred EEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeee-eccccccCCCCCCCcccceEEEEEee
Q 009616 365 NVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFN-IDEFRSCHPSLPLQVESLSLFMESFS 433 (531)
Q Consensus 365 ~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~-ip~~~~~~~~~~~~~~L~~L~L~~~~ 433 (531)
+|++++ +.+.......+...+..+++|+.|+++.|....... .-..+. . .++.+++|+.|+++.|.
T Consensus 229 ~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~-~-~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 229 SLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG-A-AFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH-T-TSTTCCEEEEECTTSCB
T ss_pred EEECcC-CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH-H-HhccCCceEEEecCCCc
Confidence 888886 555555455556666788888888888765221100 000111 1 35567788888888773
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=9e-12 Score=119.28 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=112.1
Q ss_pred cccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEE
Q 009616 156 TIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL 235 (531)
Q Consensus 156 ~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L 235 (531)
.+..+++|++|++++|.+...+.+..+++|++|+|++|.+++. +. ++.+++|++|++++|...+...+.. ++|+.|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCcCcccc-CcccEE
Confidence 3556788999999999887744778899999999999988542 22 7889999999999887544222333 789999
Q ss_pred EEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 236 ILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 236 ~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
++++|. ..++. ...+++|+.|++++|. ...+ .++.+++|+.|++++|.+++. ..+..+++|+.|+++++.
T Consensus 112 ~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 112 FLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred EccCCccCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence 999887 33332 3368899999999998 3333 688899999999999998864 557788999999998864
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=8.2e-12 Score=133.46 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=129.1
Q ss_pred ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616 157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~ 236 (531)
+..+++|+.|++++|.+...+.+..+++|+.|+|++|.+.+. +. +..+++|+.|+|++|.....-.+..+++|+.|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 345788999999999988856788999999999999998542 22 789999999999999765444566789999999
Q ss_pred EEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc--hh
Q 009616 237 LRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LE 313 (531)
Q Consensus 237 l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~--l~ 313 (531)
+++|. ..++. ...+++|+.|++++|.......+..+++|+.|+|++|.+++.. + +..+++|+.|+|++|.. +.
T Consensus 116 Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 116 LEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp CTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCBCG
T ss_pred ecCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCch-h--hccCCCCCEEECcCCCCCCCh
Confidence 99997 33322 3478999999999998222257889999999999999998632 2 78899999999999853 22
Q ss_pred HHHhcCcccceeccccc
Q 009616 314 RIMISSNRLMHLEVYNC 330 (531)
Q Consensus 314 ~l~~~~~~L~~L~l~~c 330 (531)
. ...+++|+.|++.++
T Consensus 192 ~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 192 A-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp G-GTTCTTCSEEECCSE
T ss_pred H-HccCCCCCEEEccCC
Confidence 1 122456666666654
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.22 E-value=1.3e-11 Score=117.25 Aligned_cols=151 Identities=20% Similarity=0.148 Sum_probs=115.9
Q ss_pred cCCcEEEEeeecCCCccccC-CccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.+++.|+++. .....+ |..+..+++|++|+|++|.+.+ +..+.++++|++|+|++|.++. ..+..+..+++|
T Consensus 35 ~~l~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQS----TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTT----SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTC
T ss_pred CCCCEEEccC----CCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCC
Confidence 3788888875 222333 4467789999999999999988 4457899999999999999853 233456789999
Q ss_pred ceEEeeecCCcceee--ccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCC
Q 009616 211 EDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP 284 (531)
Q Consensus 211 e~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~ 284 (531)
++|+|++|....... +.++++|+.|++++|. ..++. ....+++|++|++++|. ...+..+..+++|+.|++++|
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 999999996543222 4568999999999997 33333 23468999999999998 333346889999999999999
Q ss_pred CCChh
Q 009616 285 HFNDQ 289 (531)
Q Consensus 285 ~~~~~ 289 (531)
.++..
T Consensus 190 ~~~c~ 194 (251)
T 3m19_A 190 QFDCS 194 (251)
T ss_dssp CBCTT
T ss_pred ceeCC
Confidence 98753
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=7.2e-11 Score=124.89 Aligned_cols=133 Identities=16% Similarity=0.055 Sum_probs=73.6
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
.+++.|+++. + ....+|..++ ++|++|+|++|.+...+ ..+++|++|+|++|.+++ ++. +.. +|++|
T Consensus 59 ~~L~~L~Ls~--n--~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNR--L--NLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCS--S--CCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEE
T ss_pred CCccEEEeCC--C--CCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEE
Confidence 4788887765 2 2334676553 67888888888777622 457778888888777643 333 222 77777
Q ss_pred EeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCC
Q 009616 214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFN 287 (531)
Q Consensus 214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~ 287 (531)
+|++|...+ ++. .+++|+.|++++|. ..++. .+++|++|++++|. ..+|. +. ++|+.|+|++|.++
T Consensus 126 ~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 126 DVDNNQLTM-LPE-LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp ECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred ECCCCcCCC-CCC-cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence 777765433 222 34556666665554 22222 34455555555554 22222 22 44555555554444
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=2e-11 Score=112.37 Aligned_cols=138 Identities=16% Similarity=0.123 Sum_probs=83.1
Q ss_pred ccccCCccccCCCCccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeec
Q 009616 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI 226 (531)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~ 226 (531)
....+|..+ .++|++|++++|.+.+ + ..+.++++|++|++++|.+.. .....+..+++|++|++++|.......
T Consensus 18 ~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~- 93 (208)
T 2o6s_A 18 GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPN- 93 (208)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCH-
Confidence 345566554 3578899999988877 3 345778888888888887742 122335667778888777775422111
Q ss_pred cccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccc-eeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616 227 SEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304 (531)
Q Consensus 227 ~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L 304 (531)
.....+++|++|++++|. ... +..+..+++|+.|++++|.+++ .....+..+++|+.|
T Consensus 94 -------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 94 -------------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYI 153 (208)
T ss_dssp -------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred -------------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEE
Confidence 011134455555555554 212 2235666777777777776663 334445667777777
Q ss_pred Eecccc
Q 009616 305 SIISLE 310 (531)
Q Consensus 305 ~L~~c~ 310 (531)
+++++.
T Consensus 154 ~l~~N~ 159 (208)
T 2o6s_A 154 WLHDNP 159 (208)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 777653
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.17 E-value=1.5e-11 Score=113.15 Aligned_cols=103 Identities=24% Similarity=0.241 Sum_probs=73.3
Q ss_pred cCCcEEEEeeecCCCccccCCcc-ccCCCCccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.++++|+++. + ....+|.. +..+++|++|++++|.+.+ + ..+.++++|++|+|++|.+.. .....+..+++|
T Consensus 28 ~~l~~L~l~~--n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLET--N--SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCS--S--CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEcCC--C--ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCC
Confidence 4799999976 2 23355554 5688999999999999988 4 346789999999999998853 223346789999
Q ss_pred ceEEeeecCCcceee--ccccccccEEEEEeec
Q 009616 211 EDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY 241 (531)
Q Consensus 211 e~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~ 241 (531)
++|++++|...+... +.++++|+.|++++|.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 999999886532211 2345566666665554
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.16 E-value=3.2e-11 Score=112.12 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=77.0
Q ss_pred ccCCccccCCCCccEEEecCCcCCC-Cc--CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeecc
Q 009616 151 NALPQTIFSAKLLTSLKLFGCKLEQ-PS--HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS 227 (531)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~ 227 (531)
..+|..+. ..+++|+|++|.+.+ ++ .+.++++|++|+|++|.++.- .+..+.++++|++|+|++|...+.
T Consensus 24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~---- 96 (220)
T 2v70_A 24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENV---- 96 (220)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCC----
T ss_pred ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCcc----
Confidence 34555432 345666666666655 21 245566666666666655321 112244555555555555543211
Q ss_pred ccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEE
Q 009616 228 EAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS 305 (531)
Q Consensus 228 ~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~ 305 (531)
.+.....+++|++|++++|. ...+..+..+++|+.|+|++|.+++ ..+..+..+++|+.|+
T Consensus 97 ----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 97 ----------------QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLN 159 (220)
T ss_dssp ----------------CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEE
T ss_pred ----------------CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEE
Confidence 11112245667777777766 3334567777888888888887774 3345566778888888
Q ss_pred ecccc
Q 009616 306 IISLE 310 (531)
Q Consensus 306 L~~c~ 310 (531)
|+++.
T Consensus 160 L~~N~ 164 (220)
T 2v70_A 160 LLANP 164 (220)
T ss_dssp CCSCC
T ss_pred ecCcC
Confidence 87754
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.15 E-value=9.6e-11 Score=123.96 Aligned_cols=155 Identities=16% Similarity=0.053 Sum_probs=111.1
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
.+++.|+|+. + ....+| ..+++|++|+|++|.+.+ |. +.+ +|++|+|++|.+++ ++. .+++|+.
T Consensus 80 ~~L~~L~Ls~--N--~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~ 144 (571)
T 3cvr_A 80 PQITVLEITQ--N--ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLEY 144 (571)
T ss_dssp TTCSEEECCS--S--CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCCE
T ss_pred CCCCEEECcC--C--CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC--CCC---cCccccE
Confidence 5789998875 2 234677 346889999999998887 44 443 89999999988854 343 6889999
Q ss_pred EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCc-------cEEEEeC
Q 009616 213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHL-------RKLVLFL 283 (531)
Q Consensus 213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L-------~~L~L~~ 283 (531)
|+|++|...+ ++. .+++|+.|++++|. ..++. +. ++|+.|++++|. ..+|. +.. +| +.|+|++
T Consensus 145 L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 145 INADNNQLTM-LPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp EECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCS
T ss_pred EeCCCCccCc-CCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCC
Confidence 9998887543 333 46789999999887 44554 22 889999999988 44444 443 67 9999999
Q ss_pred CCCChhhhhhhhcCCCCCcEEEeccccchh
Q 009616 284 PHFNDQEFHPLISKFPLLEDLSIISLETLE 313 (531)
Q Consensus 284 ~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~ 313 (531)
|.++. ++..+.++++|+.|+|++|....
T Consensus 217 N~l~~--lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 217 NRITH--IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCCCC--CCGGGGGSCTTEEEECCSSSCCH
T ss_pred Cccee--cCHHHhcCCCCCEEEeeCCcCCC
Confidence 98883 44445568899999999876533
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.15 E-value=7.4e-11 Score=117.88 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=83.1
Q ss_pred ccccCCccccCCCCccEEEecCCcCCC-Cc-CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee-
Q 009616 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PS-HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR- 225 (531)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~- 225 (531)
....+|..+. +++++|+|++|++.. ++ .+.++++|++|+|++|.+.+..-...+.++++|+++.+.++..+..+.
T Consensus 20 ~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 3445665552 567777777777766 43 456777777777777765221111234566666665555544444443
Q ss_pred --ccccccccEEEEEeec-ccccee-eeeCCcccEEEecccc--ccce-eeccCCC-CccEEEEeCCCCChhhhhhhhcC
Q 009616 226 --ISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR--VPRL-LDVAECP-HLRKLVLFLPHFNDQEFHPLISK 297 (531)
Q Consensus 226 --~~~l~~L~~L~l~~~~-~~l~~~-~~~~~~L~~L~l~~~~--~~~~-~~~~~~~-~L~~L~L~~~~~~~~~~~~~l~~ 297 (531)
+.++++|+.|++++|. ..++.. .....++..|++.++. ...+ ..+..++ .++.|++++|.++. ++.....
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~ 175 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFN 175 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSST
T ss_pred hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhcc
Confidence 3356677777777775 222221 2244455666665543 1111 1233333 46666666666652 2222223
Q ss_pred CCCCcEEEecccc
Q 009616 298 FPLLEDLSIISLE 310 (531)
Q Consensus 298 ~~~L~~L~L~~c~ 310 (531)
.++|+.|.+.++.
T Consensus 176 ~~~L~~l~l~~~n 188 (350)
T 4ay9_X 176 GTQLDELNLSDNN 188 (350)
T ss_dssp TEEEEEEECTTCT
T ss_pred ccchhHHhhccCC
Confidence 3455666655543
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.15 E-value=6.8e-11 Score=118.14 Aligned_cols=210 Identities=10% Similarity=0.013 Sum_probs=140.3
Q ss_pred cCCcEEEEeeecCCCccccCCcc-ccCCCCccEEEecCCcCCC--C-cCCCCCCccCEE-EeeeEEechHhHHHHHhCCc
Q 009616 134 NGVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ--P-SHCANLQSLKKL-SLDEVYVNDQMVQSLVRECR 208 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~--~-~~~~~l~~L~~L-~L~~~~~~~~~l~~~l~~~~ 208 (531)
+++++|+|+. .....+|.. +.++++|++|+|++|.+.+ + ..+.++++|+++ .+..|.+.. ..+..+..++
T Consensus 30 ~~l~~L~Ls~----N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVL----TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEES----CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred CCCCEEEccC----CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence 5799999986 345578764 6789999999999998765 3 356788888764 455555532 1234467899
Q ss_pred ccceEEeeecCCcceee--ccccccccEEEEEeeccccceee----ee-CCcccEEEecccc-ccceeeccCCCCccEEE
Q 009616 209 VLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTYQELESVE----IA-VPSLQQLELSFSR-VPRLLDVAECPHLRKLV 280 (531)
Q Consensus 209 ~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~~~l~~~~----~~-~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~ 280 (531)
+|++|++++|....... ..+..++..|++.++. .+..+. .. ...++.|++++|. ..++......++|+.|+
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred ccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence 99999999997643322 2234677788887665 232222 12 3468999999998 55555555667899999
Q ss_pred EeC-CCCChhhhhhhhcCCCCCcEEEeccccchhHHHh-cCcccceeccccccchhhhcccCCCcceeEeecCCcCceec
Q 009616 281 LFL-PHFNDQEFHPLISKFPLLEDLSIISLETLERIMI-SSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVST 358 (531)
Q Consensus 281 L~~-~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~ 358 (531)
+.+ +.++ ......+.++++|+.|+|+++. ++.+.. .+.+|+.|.+.++.+++.+ | .+.
T Consensus 184 l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~l-----------------P-~l~ 243 (350)
T 4ay9_X 184 LSDNNNLE-ELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKL-----------------P-TLE 243 (350)
T ss_dssp CTTCTTCC-CCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCC-----------------C-CTT
T ss_pred hccCCccc-CCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcC-----------------C-Cch
Confidence 975 4454 4555677899999999999874 322221 2345555555544443322 2 234
Q ss_pred CCCCCcEEEEE
Q 009616 359 NAPCPLNVLFS 369 (531)
Q Consensus 359 ~~~~L~~L~l~ 369 (531)
++++|+.+++.
T Consensus 244 ~l~~L~~l~l~ 254 (350)
T 4ay9_X 244 KLVALMEASLT 254 (350)
T ss_dssp TCCSCCEEECS
T ss_pred hCcChhhCcCC
Confidence 57888998886
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=2.6e-11 Score=107.53 Aligned_cols=127 Identities=21% Similarity=0.162 Sum_probs=77.6
Q ss_pred CCccEEEecCCcCC--C-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEE
Q 009616 161 KLLTSLKLFGCKLE--Q-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237 (531)
Q Consensus 161 ~~L~~L~L~~~~l~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l 237 (531)
++|++|++++|.+. . |..+..+++|++|++++|.+... ..+..+++|++|++++|...+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-------------- 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-------------- 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH--------------
Confidence 66777777777776 2 44456677777777777665331 2244455555555555443221
Q ss_pred EeeccccceeeeeCCcccEEEecccc-ccce--eeccCCCCccEEEEeCCCCChhhh--hhhhcCCCCCcEEEecccc
Q 009616 238 RFTYQELESVEIAVPSLQQLELSFSR-VPRL--LDVAECPHLRKLVLFLPHFNDQEF--HPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 238 ~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~--~~~~~~~~L~~L~L~~~~~~~~~~--~~~l~~~~~L~~L~L~~c~ 310 (531)
++.....+++|++|++++|. ...+ ..+..+++|+.|++++|.+++... ...+..+++|+.|++++|.
T Consensus 87 ------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 87 ------LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ------CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ------HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 22222246677777777776 2222 467788888888888888774321 1467778888888888764
No 109
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.12 E-value=3.5e-11 Score=129.83 Aligned_cols=268 Identities=16% Similarity=0.081 Sum_probs=176.7
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
.+++.+.+... ....++ .+..+.+|+.|++.+|.+... ....++.|+.+++..+..... .. ...++.|+.|
T Consensus 306 ~~l~~l~~~~~----~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~l~~L~~l~l~~n~~~~~-~~--~~~l~~L~~L 376 (635)
T 4g8a_A 306 TNVSSFSLVSV----TIERVK-DFSYNFGWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGGNA-FS--EVDLPSLEFL 376 (635)
T ss_dssp TTCSEEEEESC----EEEECG-GGGSCCCCSEEEEESCEESSC-CCCBCTTCCEEEEESCCSCCB-CC--CCBCTTCCEE
T ss_pred ccccccccccc----cccccc-ccccchhhhhhhcccccccCc-CcccchhhhhcccccccCCCC-cc--cccccccccc
Confidence 46777776541 112222 244567899999999988761 224578899999988866321 11 3468999999
Q ss_pred EeeecCCcceee----ccccccccEEEEEeec-cccceeeeeCCcccEEEecccc---ccceeeccCCCCccEEEEeCCC
Q 009616 214 SFFYCFGLKRLR----ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPH 285 (531)
Q Consensus 214 ~L~~c~~~~~l~----~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~ 285 (531)
++++|....... ...+.+|+.|++..+. .........+++|+.+++.++. ......+..+++++.++++.+.
T Consensus 377 ~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp ECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence 999887643221 2246789999988776 2333334478899999998887 3334467889999999999998
Q ss_pred CChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcE
Q 009616 286 FNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLN 365 (531)
Q Consensus 286 ~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~ 365 (531)
++. ..+..+..++.|+.|+|++|.....+... .+..+++|+.++++.++++.+ .|..+.++++|++
T Consensus 457 l~~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-------~~~~l~~L~~L~Ls~N~L~~l------~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 457 TRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPD-------IFTELRNLTFLDLSQCQLEQL------SPTAFNSLSSLQV 522 (635)
T ss_dssp CEE-CCTTTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCE
T ss_pred ccc-ccccccccchhhhhhhhhhcccccccCch-------hhhhccccCEEECCCCccCCc------ChHHHcCCCCCCE
Confidence 874 34556778899999999987644322110 122334455555555554322 2456778899999
Q ss_pred EEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCC-cccceEEEEEeeeccC
Q 009616 366 VLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQ-VESLSLFMESFSLYMD 437 (531)
Q Consensus 366 L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~-~~L~~L~L~~~~~~~~ 437 (531)
|+|++ +.+.... +..+.++++|+.|+|+.|..... .|. .+..+ .+|++|+|+.|...-+
T Consensus 523 L~Ls~-N~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~--~~~------~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 523 LNMSH-NNFFSLD----TFPYKCLNSLQVLDYSLNHIMTS--KKQ------ELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EECTT-SCCCBCC----CGGGTTCTTCCEEECTTSCCCBC--CSS------CTTCCCTTCCEEECTTCCBCCS
T ss_pred EECCC-CcCCCCC----hhHHhCCCCCCEEECCCCcCCCC--CHH------HHHhhhCcCCEEEeeCCCCccc
Confidence 99985 4444322 23467889999999987776554 342 33444 6899999998754444
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=7.9e-11 Score=110.19 Aligned_cols=138 Identities=16% Similarity=0.108 Sum_probs=86.0
Q ss_pred ccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeec
Q 009616 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI 226 (531)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~ 226 (531)
....+|..+. ++|++|+|++|.+.+ +..+.++++|++|+|++|.+.. .....+..+++|+.|+|++|.... +..
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~-l~~ 105 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTV-LPS 105 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcCCc-cCh
Confidence 4456666543 778888888888777 4556778888888888877732 112334567777777777664322 111
Q ss_pred cccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEE
Q 009616 227 SEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS 305 (531)
Q Consensus 227 ~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~ 305 (531)
.....+++|++|++++|. ..+|..+..+++|+.|+|++|.++. .....+..+++|+.|+
T Consensus 106 -------------------~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 106 -------------------AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAY 165 (229)
T ss_dssp -------------------TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred -------------------hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEE
Confidence 111234555566666555 4445556777777777777777763 3335566777888888
Q ss_pred ecccc
Q 009616 306 IISLE 310 (531)
Q Consensus 306 L~~c~ 310 (531)
|.+++
T Consensus 166 l~~N~ 170 (229)
T 3e6j_A 166 LFGNP 170 (229)
T ss_dssp CTTSC
T ss_pred eeCCC
Confidence 87754
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=1.1e-10 Score=109.15 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=86.8
Q ss_pred ccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeec
Q 009616 163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY 241 (531)
Q Consensus 163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~ 241 (531)
-+.++.+++.+.. |..+ .++|++|+|++|.+... .+..+..+++|++|+|++|.. ..+..
T Consensus 21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~--------------- 81 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPV--------------- 81 (229)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCT---------------
T ss_pred CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcCh---------------
Confidence 5678888888876 5443 48999999999988542 234467788888888887764 22211
Q ss_pred cccceeeeeCCcccEEEecccc-cc-ceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 242 QELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 242 ~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
.....+++|++|++++|. .. .+..+..+++|+.|+|++|.++. ++..+.++++|+.|+|+++.
T Consensus 82 ----~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 82 ----GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSC
T ss_pred ----hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCc
Confidence 111235666666676666 22 23347889999999999999983 45556889999999999974
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=2e-11 Score=116.88 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=114.9
Q ss_pred CCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEE
Q 009616 159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR 238 (531)
Q Consensus 159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~ 238 (531)
.+.+++.++++++.+.....+..+++|++|++++|.+.. ++ .+..+++|++|++++|...+...+.++++|+.|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence 346677788888888773457789999999999998843 33 378899999999999976544447788999999999
Q ss_pred eec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 239 FTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 239 ~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
+|. ..++.+.. ++|+.|++++|.......++.+++|+.|++++|.+++- + .+..+++|+.|++++|.
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSC
T ss_pred CCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCc
Confidence 997 44444433 89999999999922223689999999999999999863 2 47789999999999975
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=1.9e-11 Score=106.14 Aligned_cols=125 Identities=18% Similarity=0.122 Sum_probs=80.0
Q ss_pred CCCccEEEecCCcCC-C--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616 160 AKLLTSLKLFGCKLE-Q--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236 (531)
Q Consensus 160 ~~~L~~L~L~~~~l~-~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~ 236 (531)
.++|++|++++|.+. + |..+..+++|++|++++|.+.+. ..++.+++|++|++++|...+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~------------- 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG------------- 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-------------
Confidence 367888888888887 3 56667788888888888876432 3345566666666666543221
Q ss_pred EEeeccccceeeeeCCcccEEEecccc-cc--ceeeccCCCCccEEEEeCCCCChhhh--hhhhcCCCCCcEEEec
Q 009616 237 LRFTYQELESVEIAVPSLQQLELSFSR-VP--RLLDVAECPHLRKLVLFLPHFNDQEF--HPLISKFPLLEDLSII 307 (531)
Q Consensus 237 l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~--~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~l~~~~~L~~L~L~ 307 (531)
++.....+++|++|++++|. .. .+..++.+++|+.|++++|.+++... ...+..+++|+.|+++
T Consensus 80 -------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 -------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 22222245666777776666 22 22567778888888888887765321 1456777888887765
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.07 E-value=1.5e-10 Score=107.56 Aligned_cols=138 Identities=15% Similarity=0.198 Sum_probs=86.2
Q ss_pred ccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeec
Q 009616 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI 226 (531)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~ 226 (531)
....+|..+. ++|++|+|++|.+.. +..+..+++|++|+|++|.+... .+..+.++++|++|+|++|.... +..
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~-l~~ 97 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITE-LPK 97 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCC-CCT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCc-cCH
Confidence 4456666554 578888888887776 33567778888888887776431 23335666777777776665321 111
Q ss_pred cccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616 227 SEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304 (531)
Q Consensus 227 ~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L 304 (531)
.....+++|++|++++|. ...+..+..+++|+.|+|++|.++. .....+..+++|+.|
T Consensus 98 -------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 98 -------------------SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTM 157 (220)
T ss_dssp -------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred -------------------hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEE
Confidence 111234566666666665 2234457777888888888887774 334456677888888
Q ss_pred Eecccc
Q 009616 305 SIISLE 310 (531)
Q Consensus 305 ~L~~c~ 310 (531)
+|+++.
T Consensus 158 ~L~~N~ 163 (220)
T 2v9t_B 158 HLAQNP 163 (220)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 887754
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.06 E-value=1.3e-10 Score=108.05 Aligned_cols=129 Identities=17% Similarity=0.130 Sum_probs=89.3
Q ss_pred cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616 134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL 210 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L 210 (531)
.++++|+++. .....+|. .+..+++|++|+|++|.+.+ +..+.++++|++|+|++|.++. ..+..+.++++|
T Consensus 32 ~~l~~L~l~~----n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQ----NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCS----SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred cCCCEEECCC----CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCC
Confidence 5799999875 23345554 56778999999999999987 6778999999999999998853 223345778889
Q ss_pred ceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCC
Q 009616 211 EDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFN 287 (531)
Q Consensus 211 e~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~ 287 (531)
++|+|++|....... .....+++|++|++++|. ...+..+..+++|+.|+|++|.++
T Consensus 107 ~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 107 QLLLLNANKINCLRV--------------------DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CEEECCSSCCCCCCT--------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCCCCEeCH--------------------HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999988886432111 111134555555555555 222234677788888888887765
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.05 E-value=1.8e-10 Score=107.08 Aligned_cols=130 Identities=13% Similarity=0.065 Sum_probs=91.6
Q ss_pred cCCcEEEEeeecCCCccccC-C-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcc
Q 009616 134 NGVKELDFEVITDKNSVNAL-P-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV 209 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~l-p-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~ 209 (531)
..+++|+++. + ....+ | ..+..+++|++|+|++|.+.+ +..+.++++|++|+|++|.+... .+..+..+++
T Consensus 32 ~~~~~L~L~~--N--~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNN--N--EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLES 106 (220)
T ss_dssp TTCSEEECCS--S--CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSS
T ss_pred CCCCEEEcCC--C--cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcC
Confidence 4678888875 2 23344 3 346789999999999999988 44788999999999999998432 3344678899
Q ss_pred cceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCC
Q 009616 210 LEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFN 287 (531)
Q Consensus 210 Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~ 287 (531)
|++|+|++|...+..+ .....+++|++|++++|. ...+..+..+++|+.|++++|.++
T Consensus 107 L~~L~Ls~N~l~~~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 107 LKTLMLRSNRITCVGN--------------------DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCEEECTTSCCCCBCT--------------------TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCEEECCCCcCCeECH--------------------hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999998886432211 111234566666666666 333556788888888888888876
Q ss_pred h
Q 009616 288 D 288 (531)
Q Consensus 288 ~ 288 (531)
.
T Consensus 167 c 167 (220)
T 2v70_A 167 C 167 (220)
T ss_dssp C
T ss_pred C
Confidence 4
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.04 E-value=1.4e-10 Score=116.39 Aligned_cols=159 Identities=18% Similarity=0.100 Sum_probs=110.1
Q ss_pred CccccCCccccCCCCccEEEecCCcCCC-C-cCCC-CCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee
Q 009616 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCA-NLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL 224 (531)
Q Consensus 148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~-~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l 224 (531)
.....+|..+. +.++.|+|++|.+.+ + ..+. ++++|++|+|++|.+..- .+..+.++++|++|+|++|......
T Consensus 28 ~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~ 104 (361)
T 2xot_A 28 QQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLHTLD 104 (361)
T ss_dssp SCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcCCcCC
Confidence 34556776554 468999999999887 3 3454 899999999999988432 2234678999999999998753322
Q ss_pred --eccccccccEEEEEeec-ccc-ceeeeeCCcccEEEecccc-ccceee-c---cCCCCccEEEEeCCCCChhhhhhhh
Q 009616 225 --RISEAHKLKSLILRFTY-QEL-ESVEIAVPSLQQLELSFSR-VPRLLD-V---AECPHLRKLVLFLPHFNDQEFHPLI 295 (531)
Q Consensus 225 --~~~~l~~L~~L~l~~~~-~~l-~~~~~~~~~L~~L~l~~~~-~~~~~~-~---~~~~~L~~L~L~~~~~~~~~~~~~l 295 (531)
.+.++++|+.|++++|. ..+ +.....+++|+.|++++|. ...+.. + ..+++|+.|+|++|.++. .....+
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~ 183 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDL 183 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC-CCHHHH
T ss_pred HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHh
Confidence 24567899999999886 222 2223467889999999888 444433 3 568899999999888874 333445
Q ss_pred cCCCC--CcEEEecccc
Q 009616 296 SKFPL--LEDLSIISLE 310 (531)
Q Consensus 296 ~~~~~--L~~L~L~~c~ 310 (531)
..++. |+.|+|.+++
T Consensus 184 ~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHSCHHHHTTEECCSSC
T ss_pred hhccHhhcceEEecCCC
Confidence 56665 4778888753
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.04 E-value=2.1e-10 Score=101.58 Aligned_cols=105 Identities=23% Similarity=0.100 Sum_probs=78.3
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
+++++|+++. +......+|..+..+++|++|++++|.+.+...+..+++|++|++++|.+... ++..+.++++|++|
T Consensus 24 ~~L~~L~l~~--n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDN--CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCS--CBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEECCC--CCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 4799999876 22222378888889999999999999988766778899999999999998543 56677789999999
Q ss_pred EeeecCCcce---eeccccccccEEEEEeec
Q 009616 214 SFFYCFGLKR---LRISEAHKLKSLILRFTY 241 (531)
Q Consensus 214 ~L~~c~~~~~---l~~~~l~~L~~L~l~~~~ 241 (531)
++++|..... ..+..+++|+.|++++|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 9999865331 123344555555555554
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=2.5e-10 Score=99.00 Aligned_cols=105 Identities=23% Similarity=0.180 Sum_probs=79.2
Q ss_pred cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
.++++|+++. +......+|..+..+++|++|++++|.+.+...++++++|++|++++|.+.+. ++..+..+++|++|
T Consensus 17 ~~l~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDN--SRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTT--CBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred ccCeEEEccC--CcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence 4789998875 22222378888889999999999999988766778899999999999998543 67777889999999
Q ss_pred EeeecCCcce---eeccccccccEEEEEeec
Q 009616 214 SFFYCFGLKR---LRISEAHKLKSLILRFTY 241 (531)
Q Consensus 214 ~L~~c~~~~~---l~~~~l~~L~~L~l~~~~ 241 (531)
++++|...+. ..+.++++|+.|++++|.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 9999875331 223345556666665554
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=5.7e-12 Score=133.84 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=79.6
Q ss_pred cCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEe------------chHhHHHHHhCCcccceEE-eeecCC--c
Q 009616 158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV------------NDQMVQSLVRECRVLEDLS-FFYCFG--L 221 (531)
Q Consensus 158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~------------~~~~l~~~l~~~~~Le~L~-L~~c~~--~ 221 (531)
..++.|+.|+|++|.+.. |..++++++|+.|+++++.. ....++..++.+++|+.|+ ++.+.. +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 456777777777777665 66677777777777655431 0112344455566666665 332211 0
Q ss_pred cee-----eccc--cccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhh
Q 009616 222 KRL-----RISE--AHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFH 292 (531)
Q Consensus 222 ~~l-----~~~~--l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 292 (531)
..+ .+.. ...|+.|++++|. ..++. ...+++|+.|++++|. ..+|..++.+++|+.|+|++|.+++ ++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence 000 0110 1245666666655 33333 3345566666666665 4445556666666666666666653 23
Q ss_pred hhhcCCCCCcEEEecccc
Q 009616 293 PLISKFPLLEDLSIISLE 310 (531)
Q Consensus 293 ~~l~~~~~L~~L~L~~c~ 310 (531)
.+.++++|+.|+|++|.
T Consensus 503 -~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNR 519 (567)
T ss_dssp -GGTTCSSCCEEECCSSC
T ss_pred -ccCCCCCCcEEECCCCC
Confidence 35556666666666553
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=4.3e-11 Score=109.28 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=85.6
Q ss_pred cccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeecccc
Q 009616 150 VNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEA 229 (531)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l 229 (531)
...+|..+..+++|++|++++|.+.+.+.+.++++|++|++++|.+.. ++..+..+++|++|++++|...+...+.++
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l 114 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSGIEKL 114 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence 445555777888899999988888773377778888888888888752 455556677888888887754332123344
Q ss_pred ccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhh---------hhhhhcCCC
Q 009616 230 HKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQE---------FHPLISKFP 299 (531)
Q Consensus 230 ~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~---------~~~~l~~~~ 299 (531)
++|+.|++++|. ..++. ...+..+++|+.|++++|.+++.. ....+..++
T Consensus 115 ~~L~~L~l~~N~i~~~~~--------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGE--------------------IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp HHSSEEEESEEECCCHHH--------------------HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred CCCCEEECCCCcCCchhH--------------------HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 555555555553 11111 124566677777777777665431 223466788
Q ss_pred CCcEEE
Q 009616 300 LLEDLS 305 (531)
Q Consensus 300 ~L~~L~ 305 (531)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 888876
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=2.6e-10 Score=101.92 Aligned_cols=131 Identities=18% Similarity=0.153 Sum_probs=82.6
Q ss_pred ccCCCCccEEEecCCcCCCCcCCCCC-CccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEE
Q 009616 157 IFSAKLLTSLKLFGCKLEQPSHCANL-QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL 235 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~l~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L 235 (531)
+..+.+|++|++++|.+...+.+..+ ++|++|++++|.+++ + ..++.+++|++|++++|... .++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~-~~~---------- 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRIC-RIG---------- 80 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCC-EEC----------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCccc-ccC----------
Confidence 45678888999998887763334443 488888888877643 1 23455666666666665432 111
Q ss_pred EEEeeccccceeeeeCCcccEEEecccc-cccee--eccCCCCccEEEEeCCCCChhhhh---hhhcCCCCCcEEEeccc
Q 009616 236 ILRFTYQELESVEIAVPSLQQLELSFSR-VPRLL--DVAECPHLRKLVLFLPHFNDQEFH---PLISKFPLLEDLSIISL 309 (531)
Q Consensus 236 ~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~---~~l~~~~~L~~L~L~~c 309 (531)
+.+...+++|++|++++|. ...+. .+..+++|+.|++++|.++.. .. ..+..+++|+.|+++.+
T Consensus 81 ---------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 81 ---------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ---------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEEC
T ss_pred ---------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcC
Confidence 0111245666666666666 33333 577788888888888887632 11 24778889999998887
Q ss_pred cc
Q 009616 310 ET 311 (531)
Q Consensus 310 ~~ 311 (531)
..
T Consensus 151 ~~ 152 (176)
T 1a9n_A 151 KL 152 (176)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=4.1e-10 Score=100.65 Aligned_cols=129 Identities=13% Similarity=0.065 Sum_probs=79.8
Q ss_pred CCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEE
Q 009616 179 CANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLE 258 (531)
Q Consensus 179 ~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~ 258 (531)
+.++++|++|++++|.++. ++.+...+++|++|++++|... .+ .....+++|++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~---------------------~~-~~l~~l~~L~~L~ 70 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR---------------------KL-DGFPLLRRLKTLL 70 (176)
T ss_dssp EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCC---------------------EE-CCCCCCSSCCEEE
T ss_pred cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCC---------------------cc-cccccCCCCCEEE
Confidence 3446666666666665532 2222222335555555554321 11 1122467788888
Q ss_pred ecccc-ccceee-ccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc--hhH----HHhcCcccceeccccc
Q 009616 259 LSFSR-VPRLLD-VAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LER----IMISSNRLMHLEVYNC 330 (531)
Q Consensus 259 l~~~~-~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~--l~~----l~~~~~~L~~L~l~~c 330 (531)
+++|. ...+.. ++.+++|+.|++++|.++.-.....+..+++|+.|++++|.. +.. +...+++|+.|++..+
T Consensus 71 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 88887 333333 588999999999999997522123577899999999999864 111 2334677888887765
Q ss_pred c
Q 009616 331 S 331 (531)
Q Consensus 331 ~ 331 (531)
.
T Consensus 151 ~ 151 (176)
T 1a9n_A 151 K 151 (176)
T ss_dssp C
T ss_pred C
Confidence 4
No 124
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.84 E-value=1.5e-09 Score=75.77 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=33.6
Q ss_pred CCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhh
Q 009616 6 DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ 44 (531)
Q Consensus 6 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw 44 (531)
..+.++.||+||+.+||++|+.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999864
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.81 E-value=3.5e-09 Score=106.11 Aligned_cols=144 Identities=18% Similarity=0.058 Sum_probs=104.5
Q ss_pred ccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHh-CCcccceEEeeecCCccee--eccccccccEEEEE
Q 009616 163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVR-ECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILR 238 (531)
Q Consensus 163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~-~~~~Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~ 238 (531)
-++++++++.+.. |..+ .+.++.|+|++|.++.- ....+. ++++|++|+|++|...... .+.++++|+.|+++
T Consensus 20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3689999998887 5443 45699999999988542 222344 8999999999998753322 25578999999999
Q ss_pred eec-cccce-eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhh---cCCCCCcEEEecccc
Q 009616 239 FTY-QELES-VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLI---SKFPLLEDLSIISLE 310 (531)
Q Consensus 239 ~~~-~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l---~~~~~L~~L~L~~c~ 310 (531)
+|. ..+.. ....+++|+.|++++|. ...+..+..+++|+.|+|++|.++. .....+ .++++|+.|+|+++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCC
Confidence 986 22222 23467899999999998 3335568889999999999999885 233334 568899999998864
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.79 E-value=4.3e-09 Score=95.42 Aligned_cols=66 Identities=20% Similarity=0.147 Sum_probs=33.9
Q ss_pred ccCCccccCCCCccEEEecCCcCCC-Cc--CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecC
Q 009616 151 NALPQTIFSAKLLTSLKLFGCKLEQ-PS--HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF 219 (531)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~ 219 (531)
..+|..+.. +|++|++++|.+.+ ++ .++++++|++|+|++|.+++. .+..+.++++|++|+|++|.
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc
Confidence 445554432 56666666666655 22 245566666666666655321 12234445555555555443
No 127
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.78 E-value=5.5e-10 Score=112.26 Aligned_cols=60 Identities=18% Similarity=0.129 Sum_probs=34.0
Q ss_pred CCcccEEEecccc-cc-----ceeeccCCCCccEEEEeCCCCChhh---hhhhhcCCCCCcEEEecccc
Q 009616 251 VPSLQQLELSFSR-VP-----RLLDVAECPHLRKLVLFLPHFNDQE---FHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 251 ~~~L~~L~l~~~~-~~-----~~~~~~~~~~L~~L~L~~~~~~~~~---~~~~l~~~~~L~~L~L~~c~ 310 (531)
+++|++|++++|. +. ....+...++|+.|+|++|.+++.. +...+..+++|+.|+|++|.
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 4556666666665 11 1223455566777777777776532 23334455677777777654
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.74 E-value=1.1e-09 Score=99.78 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=68.0
Q ss_pred CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEE
Q 009616 178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQL 257 (531)
Q Consensus 178 ~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L 257 (531)
.+..+++|++|++++|.+.. ++ .+..+++|++|++++|.. ..++.....+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l---------------------~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI---------------------KKIENLDAVADTLEEL 98 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE---------------------CSCSSHHHHHHHCSEE
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc---------------------ccccchhhcCCcCCEE
Confidence 45556666666666666633 22 344455555555555532 2222222234566666
Q ss_pred Eecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616 258 ELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (531)
Q Consensus 258 ~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~ 311 (531)
++++|. ...+ .++.+++|+.|++++|.+++-.....+..+++|+.|++++|..
T Consensus 99 ~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 99 WISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 666665 2233 5778889999999999998533324678899999999999864
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.69 E-value=1.2e-08 Score=92.50 Aligned_cols=124 Identities=17% Similarity=0.095 Sum_probs=95.4
Q ss_pred cEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--eccccccccEEEEEee
Q 009616 164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRFT 240 (531)
Q Consensus 164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~ 240 (531)
++++++++.+.. |..+ .++|++|++++|.+........++.+++|++|+|++|...+.. .+.++++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999998877 5444 3499999999998854222224678999999999999765432 3557899999999999
Q ss_pred c-cccce-eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChh
Q 009616 241 Y-QELES-VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQ 289 (531)
Q Consensus 241 ~-~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~ 289 (531)
. ..+.. ....+++|++|++++|. +..+..++.+++|+.|+|++|.++.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 7 33332 23468999999999998 44466789999999999999998753
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.67 E-value=7.4e-09 Score=113.28 Aligned_cols=107 Identities=13% Similarity=-0.019 Sum_probs=51.0
Q ss_pred CCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEEEeec-cccceeeeeCCccc
Q 009616 179 CANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELESVEIAVPSLQ 255 (531)
Q Consensus 179 ~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~ 255 (531)
+..+++|+.|+|++|.+. .++..+..+++|++|+|++|... .++ +.++++|+.|++++|. ..++.....+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 334444444444444432 12222234444444444444332 111 2234445555554444 22222233456666
Q ss_pred EEEecccc-ccceeeccCCCCccEEEEeCCCCCh
Q 009616 256 QLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND 288 (531)
Q Consensus 256 ~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~ 288 (531)
+|+|++|. ..+|..++.+++|+.|+|++|.+++
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 66666666 4455556677777777777777664
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.66 E-value=3.3e-08 Score=89.56 Aligned_cols=120 Identities=18% Similarity=0.068 Sum_probs=65.5
Q ss_pred cEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--eccccccccEEEEEee
Q 009616 164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRFT 240 (531)
Q Consensus 164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~ 240 (531)
++++++++.+.. |..+ .++|++|+|++|.++. ++..+.++++|+.|+|++|...... .+.++
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l----------- 77 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNM----------- 77 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC-----------
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCC-----------
Confidence 456666666655 3322 3566777776666632 2334556666666666665432211 12233
Q ss_pred ccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 241 YQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 241 ~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
++|++|++++|. ...+..|..+++|+.|+|++|.++. .....+..+++|+.|+|++++
T Consensus 78 -----------~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 78 -----------TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -----------TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSC
T ss_pred -----------CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCC
Confidence 344444444444 1122346667777777777777763 334456667777777777643
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.64 E-value=1.8e-08 Score=106.85 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=78.5
Q ss_pred ccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--eccccccccEEEEEeec-cccceeeeeCCcccEEEec
Q 009616 184 SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS 260 (531)
Q Consensus 184 ~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~ 260 (531)
.|+.|+|++|.+++ ++. ++.+++|+.|+|++|... .+ .+.++++|+.|++++|. ..++ ....+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 46666666666543 333 566666666666666543 22 23456667777777665 3344 23367888888888
Q ss_pred ccc-ccc--eeeccCCCCccEEEEeCCCCChh--hhhhhhcCCCCCcEEEe
Q 009616 261 FSR-VPR--LLDVAECPHLRKLVLFLPHFNDQ--EFHPLISKFPLLEDLSI 306 (531)
Q Consensus 261 ~~~-~~~--~~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~~~~L~~L~L 306 (531)
+|. ... |..++.+++|+.|+|++|.+++. ....+...+|+|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888 333 77889999999999999998753 23345566899999864
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.60 E-value=3.9e-08 Score=87.67 Aligned_cols=35 Identities=34% Similarity=0.391 Sum_probs=17.8
Q ss_pred CCccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEe
Q 009616 161 KLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYV 195 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~ 195 (531)
++|++|++++|.+.+ + ..+.++++|++|++++|.+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 64 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI 64 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc
Confidence 455555555555544 2 2234455555555555544
No 134
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=1.9e-07 Score=93.02 Aligned_cols=204 Identities=17% Similarity=0.122 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcccccCCCccceEEEEEeecccc--CCchhHHHHHHHH-HHcCCcEEEEeeecCC------CccccCCcc
Q 009616 86 KFIRFVDASLHRFCELGFPMQKLRISVSLLEVK--ESSPLFDKWVELA-MENGVKELDFEVITDK------NSVNALPQT 156 (531)
Q Consensus 86 ~f~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~--~~~~~~~~wl~~~-~~~~l~~L~L~~~~~~------~~~~~lp~~ 156 (531)
.+.+...+++.. .....++.+.+..-. +. .....+..++..+ ..++++.|.+...... .....++..
T Consensus 92 ~~~~~~~~fl~~--~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~l 167 (362)
T 2ra8_A 92 EGVNLMDKILKD--KKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPV 167 (362)
T ss_dssp TTCCHHHHHHHC--TTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHH
T ss_pred cHHHHHHHHhcC--CCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHH
Confidence 334445555521 222446666655322 11 1112333443322 2358888887542100 001124444
Q ss_pred ccCCCCccEEEecCCc-CCCCcCCCCCCccCEEEeeeEEechHhHHHHH-hCCcccceEEeeecCC--cceeeccccccc
Q 009616 157 IFSAKLLTSLKLFGCK-LEQPSHCANLQSLKKLSLDEVYVNDQMVQSLV-RECRVLEDLSFFYCFG--LKRLRISEAHKL 232 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l-~~~~~Le~L~L~~c~~--~~~l~~~~l~~L 232 (531)
+..+++|+.|.|++|. +.-++ + .+++|++|+|..+.++...+..+. ..+|+|++|+|..+.. .+...+.
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~----- 240 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN----- 240 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG-----
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH-----
Confidence 5567888888888873 22122 2 378888888888877666666543 3688888888863211 0110000
Q ss_pred cEEEEEeeccccceee--eeCCcccEEEecccc-c-cce---eeccCCCCccEEEEeCCCCChhhhhhh---hcCCCCCc
Q 009616 233 KSLILRFTYQELESVE--IAVPSLQQLELSFSR-V-PRL---LDVAECPHLRKLVLFLPHFNDQEFHPL---ISKFPLLE 302 (531)
Q Consensus 233 ~~L~l~~~~~~l~~~~--~~~~~L~~L~l~~~~-~-~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~~---l~~~~~L~ 302 (531)
.+.... ..+|+|++|.+.+|. . ... ...+.+++|+.|+|+.|.+++.....+ +.++++|+
T Consensus 241 ----------~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 241 ----------VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp ----------GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred ----------HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 000000 123445555554443 1 000 011345677777777777765433222 24567777
Q ss_pred EEEecccc
Q 009616 303 DLSIISLE 310 (531)
Q Consensus 303 ~L~L~~c~ 310 (531)
.|+|+.|.
T Consensus 311 ~L~L~~n~ 318 (362)
T 2ra8_A 311 FINMKYNY 318 (362)
T ss_dssp EEECCSBB
T ss_pred EEECCCCc
Confidence 77777664
No 135
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=1.2e-07 Score=94.44 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=84.3
Q ss_pred hHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeec---cccceee-eeCCcccEEEeccc--c--cc--c--
Q 009616 199 MVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY---QELESVE-IAVPSLQQLELSFS--R--VP--R-- 266 (531)
Q Consensus 199 ~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~---~~l~~~~-~~~~~L~~L~l~~~--~--~~--~-- 266 (531)
.+..++..+|+|++|.|.+|..+.-..+ .+++|++|++..|. ..+..+. ..+|+|++|+|+.+ . +. .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 4667888999999999998854332223 36899999999875 1122222 26899999998632 1 11 0
Q ss_pred ---eeeccCCCCccEEEEeCCCCChhhhhhhh--cCCCCCcEEEeccccch----hHHHh---cCcccceeccccc
Q 009616 267 ---LLDVAECPHLRKLVLFLPHFNDQEFHPLI--SKFPLLEDLSIISLETL----ERIMI---SSNRLMHLEVYNC 330 (531)
Q Consensus 267 ---~~~~~~~~~L~~L~L~~~~~~~~~~~~~l--~~~~~L~~L~L~~c~~l----~~l~~---~~~~L~~L~l~~c 330 (531)
....+.+|+|+.|.|.++.+++.....+. ..+|+|++|+|+.|..- ..+.. .+++|+.|++..|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 11124589999999999998864433332 36789999999876421 11221 2356666666654
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.56 E-value=6.3e-08 Score=87.70 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=78.6
Q ss_pred CccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--
Q 009616 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-- 224 (531)
Q Consensus 148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l-- 224 (531)
.....+|..+. ++|++|+|++|.+.. |..+.++++|++|+|++|.++.- .+..+.++++|++|+|++|......
T Consensus 20 ~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 20 KGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccCEeCHH
Confidence 34556776554 689999999999887 77788899999999999988532 2334678999999999988653221
Q ss_pred eccccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccce-eeccCCCCccEEEEeCCCCC
Q 009616 225 RISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHFN 287 (531)
Q Consensus 225 ~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~ 287 (531)
.+.+++ +|++|++++|. ...+ ..+..+++|+.|++++|.+.
T Consensus 97 ~f~~l~----------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 97 TFDGLK----------------------SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTTCT----------------------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HhCCCC----------------------CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 122334 44555555554 2222 24667778888888777765
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=4.9e-08 Score=96.36 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=28.8
Q ss_pred CCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEe
Q 009616 160 AKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSF 215 (531)
Q Consensus 160 ~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L 215 (531)
|++|+.|+|.. .+.. ...+.+|++|+.|++..+.+.. .-+..+.+|..+..+.+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPL 155 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecC
Confidence 67777777776 4443 4456667777777777664311 01122344555555443
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.53 E-value=9.8e-08 Score=85.02 Aligned_cols=123 Identities=18% Similarity=0.106 Sum_probs=90.1
Q ss_pred ccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEEEe
Q 009616 163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRF 239 (531)
Q Consensus 163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~ 239 (531)
.+.++++++++.. |.. ..++|++|++++|.+.. ..+..++.+++|++|++++|....... +.++++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~--~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG--IPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT--CCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC--CCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4678888888776 432 34789999999998753 223346788999999999886543222 35678999999999
Q ss_pred ec-cccce-eeeeCCcccEEEecccc-cccee-eccCCCCccEEEEeCCCCCh
Q 009616 240 TY-QELES-VEIAVPSLQQLELSFSR-VPRLL-DVAECPHLRKLVLFLPHFND 288 (531)
Q Consensus 240 ~~-~~l~~-~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~L~~~~~~~ 288 (531)
|. ..++. ....+++|++|++++|. ...+. .+..+++|+.|++++|.++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 87 33332 23467899999999998 43333 36789999999999998875
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=7.1e-09 Score=104.10 Aligned_cols=163 Identities=14% Similarity=0.158 Sum_probs=107.5
Q ss_pred HHHHHcCCcEEEEeeecCCCc---cccCCcccc-CCCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHH
Q 009616 129 ELAMENGVKELDFEVITDKNS---VNALPQTIF-SAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQ 201 (531)
Q Consensus 129 ~~~~~~~l~~L~L~~~~~~~~---~~~lp~~l~-~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~ 201 (531)
...+..++++|+++. +... ...+...+. .+++|++|+|++|.+.. ......+++|++|+|++|.+++....
T Consensus 67 ~~~~~~~L~~L~Ls~--n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 67 SAEVLSSLRQLNLAG--VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HHHHHTTCCEEECTT--SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred HHHHHhhCCEEEecC--CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 334556889888875 2111 111222222 23789999999998865 22233577899999999998665444
Q ss_pred HH---H-hCCcccceEEeeecCCcce----e--eccccccccEEEEEeec-c--cc---ceeeeeCCcccEEEecccc-c
Q 009616 202 SL---V-RECRVLEDLSFFYCFGLKR----L--RISEAHKLKSLILRFTY-Q--EL---ESVEIAVPSLQQLELSFSR-V 264 (531)
Q Consensus 202 ~~---l-~~~~~Le~L~L~~c~~~~~----l--~~~~l~~L~~L~l~~~~-~--~l---~~~~~~~~~L~~L~l~~~~-~ 264 (531)
.+ + ..++.|++|+|++|..... + .+..+++|++|++++|. + +. .......++|++|++++|. .
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 33 3 3578999999999975221 1 12346889999999987 1 11 1222356799999999998 2
Q ss_pred c-----ceeeccCCCCccEEEEeCCCCChhhhhh
Q 009616 265 P-----RLLDVAECPHLRKLVLFLPHFNDQEFHP 293 (531)
Q Consensus 265 ~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 293 (531)
. ....+...++|+.|+|++|.+++.....
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 1 2233556799999999999999765443
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.50 E-value=4.9e-08 Score=106.76 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=86.1
Q ss_pred HHHHHhCCcccceEEeeecCCcceee--ccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCC
Q 009616 200 VQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPH 275 (531)
Q Consensus 200 l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~ 275 (531)
.+..+..++.|+.|+|++|... .++ +.++++|++|+|++|. ..++....++++|++|+|++|. ..+|..++.+++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 3555788999999999999764 332 3468999999999997 4444444579999999999999 667888999999
Q ss_pred ccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616 276 LRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET 311 (531)
Q Consensus 276 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~ 311 (531)
|+.|+|++|.++ . ++..+.++++|+.|+|++|..
T Consensus 295 L~~L~L~~N~l~-~-lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 295 LKYFYFFDNMVT-T-LPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSEEECCSSCCC-C-CCSSTTSCTTCCCEECTTSCC
T ss_pred CCEEECCCCCCC-c-cChhhhcCCCccEEeCCCCcc
Confidence 999999999997 3 455588999999999999864
No 141
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=1.7e-07 Score=82.51 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=69.6
Q ss_pred ccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEE-echHhHHHHHhC---CcccceEEeeecCCccee
Q 009616 151 NALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRE---CRVLEDLSFFYCFGLKRL 224 (531)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~~l~~---~~~Le~L~L~~c~~~~~l 224 (531)
..+|.....-..|++|++++|.++. ...+.++++|++|+|++|. +++..+..+-.. |++|++|+|++|..++.-
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 4566544444679999999998765 4556789999999999996 588888886542 678999999999887652
Q ss_pred ---eccccccccEEEEEeec
Q 009616 225 ---RISEAHKLKSLILRFTY 241 (531)
Q Consensus 225 ---~~~~l~~L~~L~l~~~~ 241 (531)
.+.++++|++|++++|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 34467888888888776
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=4e-07 Score=89.76 Aligned_cols=78 Identities=14% Similarity=0.005 Sum_probs=47.3
Q ss_pred cccccEEEEEeec-ccccee-eeeCCcccEEEecccc-ccceeeccCCCCcc-EEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616 229 AHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VPRLLDVAECPHLR-KLVLFLPHFNDQEFHPLISKFPLLEDL 304 (531)
Q Consensus 229 l~~L~~L~l~~~~-~~l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~~l~~~~~L~~L 304 (531)
|++|+.+++.+|. ..++.- ..+|++|+++.+.++- ......|.+|++|+ .+.+.. .++ ......+.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence 5677777777654 222222 2357777777777664 22233577777777 777765 444 2334556677777777
Q ss_pred Eecc
Q 009616 305 SIIS 308 (531)
Q Consensus 305 ~L~~ 308 (531)
++..
T Consensus 303 ~l~~ 306 (329)
T 3sb4_A 303 LATG 306 (329)
T ss_dssp EECS
T ss_pred EeCC
Confidence 7754
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.26 E-value=4.9e-07 Score=79.97 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=57.7
Q ss_pred CcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616 136 VKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213 (531)
Q Consensus 136 l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L 213 (531)
.+.++++. .....+|..+. ++|++|+|++|.+.+ +..+.++++|++|+|++|.+.. ..+..+..+++|++|
T Consensus 11 ~~~l~~s~----n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSG----KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTT----SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCEEEeCC----CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEE
Confidence 34555543 33455666553 678888888887776 4456778888888888877742 122334667777777
Q ss_pred EeeecCCcceee--ccccccccEEEEEee
Q 009616 214 SFFYCFGLKRLR--ISEAHKLKSLILRFT 240 (531)
Q Consensus 214 ~L~~c~~~~~l~--~~~l~~L~~L~l~~~ 240 (531)
+|++|...+... +.++++|+.|++++|
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 777765432111 223445555555444
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.23 E-value=8e-07 Score=78.90 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=44.7
Q ss_pred ccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCC
Q 009616 149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG 220 (531)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~ 220 (531)
....+|..+. ++|++|+|++|.+.+ +..+.++++|++|+|++|.+.. ..+..+.++++|++|+|++|..
T Consensus 23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCcc
Confidence 3456666554 677888888887776 4456777788888887777643 1222345667777777776654
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.19 E-value=2.8e-06 Score=85.98 Aligned_cols=213 Identities=10% Similarity=0.095 Sum_probs=109.8
Q ss_pred CCccEEEecCCcCCC--CcCCCCCCccCEEEeeeE--EechHhHHHHHhCCcccceEEeeecCCcceeecc--ccccccE
Q 009616 161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEV--YVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS--EAHKLKS 234 (531)
Q Consensus 161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~--~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~--~l~~L~~ 234 (531)
.+|+.+.+..+ +.. ...+.++ +|+.+.+... .+.. ..+.+|++|+.+++.++.. ..+.-. .+.+|+.
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~l~~I~~----~aF~~c~~L~~l~l~~n~l-~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPSTLEQLKE----DIFYYCYNLKKADLSKTKI-TKLPASTFVYAGIEE 207 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCTTCCEECS----STTTTCTTCCEEECTTSCC-SEECTTTTTTCCCSE
T ss_pred CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCCCccEehH----HHhhCcccCCeeecCCCcc-eEechhhEeecccCE
Confidence 36888887665 222 2334443 5777777642 1111 2256788888888865532 222211 2467777
Q ss_pred EEEEeecccccee-eeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccch
Q 009616 235 LILRFTYQELESV-EIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL 312 (531)
Q Consensus 235 L~l~~~~~~l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l 312 (531)
+.+..+-..+..- ..+|++|+.+.+..+- ......|.+ .+|+.+.+. +.++ ......+.+|++|+.+.+.++...
T Consensus 208 l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 208 VLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp EECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCC
T ss_pred EEeCCchheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCcccc
Confidence 7775332112211 2257778888877654 111223445 678888884 3333 223455677888888887663211
Q ss_pred hHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhcccc
Q 009616 313 ERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQI 392 (531)
Q Consensus 313 ~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L 392 (531)
.. ....+..-.+.+|.+|+.+.+. .+++++ + ...|.++++|+.+.|. ........ ..+.++ +|
T Consensus 285 ~~---~~~~I~~~aF~~c~~L~~l~l~-~~i~~I---~---~~aF~~c~~L~~l~lp--~~l~~I~~----~aF~~~-~L 347 (401)
T 4fdw_A 285 DD---PEAMIHPYCLEGCPKLARFEIP-ESIRIL---G---QGLLGGNRKVTQLTIP--ANVTQINF----SAFNNT-GI 347 (401)
T ss_dssp CC---TTCEECTTTTTTCTTCCEECCC-TTCCEE---C---TTTTTTCCSCCEEEEC--TTCCEECT----TSSSSS-CC
T ss_pred CC---cccEECHHHhhCCccCCeEEeC-CceEEE---h---hhhhcCCCCccEEEEC--ccccEEcH----HhCCCC-CC
Confidence 00 0001111124446666555544 233222 1 1345567788888885 22222111 334677 88
Q ss_pred ceeEEEee
Q 009616 393 GELHLSLN 400 (531)
Q Consensus 393 ~~L~L~~~ 400 (531)
+.+.+..+
T Consensus 348 ~~l~l~~n 355 (401)
T 4fdw_A 348 KEVKVEGT 355 (401)
T ss_dssp CEEEECCS
T ss_pred CEEEEcCC
Confidence 88887654
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.17 E-value=1.5e-06 Score=76.79 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=37.8
Q ss_pred CccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecC
Q 009616 162 LLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF 219 (531)
Q Consensus 162 ~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~ 219 (531)
+.++++++++.+.. |..+ .++|++|+|++|.+..- .+..+.++++|++|+|++|.
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCC
Confidence 35789999998887 5444 47888899888887431 23335566677777776664
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=1.2e-06 Score=76.95 Aligned_cols=42 Identities=5% Similarity=0.119 Sum_probs=34.7
Q ss_pred CCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee
Q 009616 182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL 224 (531)
Q Consensus 182 l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l 224 (531)
-.+|++|+++++.+++.++.. +++|++|++|+|++|..++..
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~ 101 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDG 101 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHH
T ss_pred CceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHH
Confidence 357999999999998877776 478999999999999876653
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.00 E-value=2.1e-05 Score=79.58 Aligned_cols=164 Identities=14% Similarity=0.167 Sum_probs=97.7
Q ss_pred CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616 135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED 212 (531)
Q Consensus 135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~ 212 (531)
+++.+.+.. ....++...+.-.+|+.+.+.. .+.. ...+.+|++|+.++|..+.+.. ++.-.-.|..|+.
T Consensus 136 ~L~~i~l~~-----~i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLNE-----GLKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEE 207 (401)
T ss_dssp CCSEEECCT-----TCCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSE
T ss_pred CccEEEeCC-----CccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCE
Confidence 456555432 1334444433334688888876 3332 4567778888888888765521 1111123678888
Q ss_pred EEeeecCCccee---eccccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCCh
Q 009616 213 LSFFYCFGLKRL---RISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND 288 (531)
Q Consensus 213 L~L~~c~~~~~l---~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~ 288 (531)
+.|..+ +..+ ...+|++|+.+++..+-..+..-.+...+|+.+.+..+- ......|.+|++|+.+.+.++.+..
T Consensus 208 l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 208 VLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred EEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccC
Confidence 888643 3332 344678888888865432222222233678888885554 2223467888888888887766541
Q ss_pred ----hhhhhhhcCCCCCcEEEecc
Q 009616 289 ----QEFHPLISKFPLLEDLSIIS 308 (531)
Q Consensus 289 ----~~~~~~l~~~~~L~~L~L~~ 308 (531)
......+.+|++|+.+.|..
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCT
T ss_pred CcccEECHHHhhCCccCCeEEeCC
Confidence 12345677888888888864
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.97 E-value=9.2e-06 Score=71.94 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=38.3
Q ss_pred eCCcccEEEecccc-cccee-eccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616 250 AVPSLQQLELSFSR-VPRLL-DVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 250 ~~~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~ 310 (531)
.+++|++|++++|. ...+. .++.+++|+.|+|++|.++. .....+..+++|+.|+|+++.
T Consensus 55 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC
T ss_pred CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCCCEEEeCCCC
Confidence 45566666666666 22332 35677777888887777773 334456677788888887754
No 150
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.92 E-value=4.6e-06 Score=79.34 Aligned_cols=36 Identities=14% Similarity=0.520 Sum_probs=34.1
Q ss_pred ccCCCCChHHHHHHhcCCChHHHH-HHhhhhhhhhhh
Q 009616 8 DHISDLPTFIIHHIMSFLSPKDVV-RTGILSTTWRKF 43 (531)
Q Consensus 8 D~is~LPd~iL~~Ils~L~~~d~~-r~s~vSkrWr~l 43 (531)
..+..||+|||.+||++||.++++ |+++|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999999999 999999999986
No 151
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.89 E-value=2.8e-06 Score=79.86 Aligned_cols=35 Identities=31% Similarity=0.573 Sum_probs=32.7
Q ss_pred cCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616 9 HISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF 43 (531)
Q Consensus 9 ~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~l 43 (531)
-|++||+||+.+|||||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999999999999999964
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=8.6e-06 Score=72.93 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=40.6
Q ss_pred CCcccEEEecccc-cc-----ceeeccCCCCccEEEE--eCCCCChhh---hhhhhcCCCCCcEEEecccc
Q 009616 251 VPSLQQLELSFSR-VP-----RLLDVAECPHLRKLVL--FLPHFNDQE---FHPLISKFPLLEDLSIISLE 310 (531)
Q Consensus 251 ~~~L~~L~l~~~~-~~-----~~~~~~~~~~L~~L~L--~~~~~~~~~---~~~~l~~~~~L~~L~L~~c~ 310 (531)
.++|++|++++|. +. ....+...++|+.|+| ++|.+++.. +...+...++|+.|+|++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4566666666665 11 2234566778888888 778888753 44556667889999988875
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.73 E-value=1.7e-05 Score=78.47 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=63.1
Q ss_pred ccccCCccccCCCCccEEEecC-CcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616 149 SVNALPQTIFSAKLLTSLKLFG-CKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR 225 (531)
Q Consensus 149 ~~~~lp~~l~~~~~L~~L~L~~-~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~ 225 (531)
....+|. +..+++|++|+|++ |.+.+ + ..+.++++|++|+|++|.+.+ ..+..+.++++|++|+|++|...+ ++
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~-~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNALES-LS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCCSC-CC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCccce-eC
Confidence 4567888 88888999999996 88877 4 567889999999999998854 234456788889999988886532 22
Q ss_pred cc--ccccccEEEEEeec
Q 009616 226 IS--EAHKLKSLILRFTY 241 (531)
Q Consensus 226 ~~--~l~~L~~L~l~~~~ 241 (531)
.. ....|+.|++.+|.
T Consensus 97 ~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp STTTCSCCCCEEECCSSC
T ss_pred HHHcccCCceEEEeeCCC
Confidence 11 11226666665553
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=1.3e-05 Score=71.76 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=35.6
Q ss_pred CCCCccEEEecCC-cCCC------CcCCCCCCccCEEEeeeEEechHh---HHHHHhCCcccceEEeeecCC
Q 009616 159 SAKLLTSLKLFGC-KLEQ------PSHCANLQSLKKLSLDEVYVNDQM---VQSLVRECRVLEDLSFFYCFG 220 (531)
Q Consensus 159 ~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~~~~~~---l~~~l~~~~~Le~L~L~~c~~ 220 (531)
.+++|++|+|++| .+.. ...+...++|++|+|++|.+++.. +...+...+.|++|+|++|..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 3466667777766 5543 122344566777777777664433 333345566677777766653
No 155
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.60 E-value=1.7e-05 Score=81.45 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=37.7
Q ss_pred CCCCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhc
Q 009616 4 TVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQT 45 (531)
Q Consensus 4 ~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~ 45 (531)
....|.|+.||+||+.+||+||+.+|+++++.|||+|+++-.
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 345689999999999999999999999999999999997643
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.58 E-value=3.6e-05 Score=76.13 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=49.2
Q ss_pred EEEecCC-cCCC-CcCCCCCCccCEEEeee-EEechHhHHHHHhCCcccceEEeeecCCccee--eccccccccEEEEEe
Q 009616 165 SLKLFGC-KLEQ-PSHCANLQSLKKLSLDE-VYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRF 239 (531)
Q Consensus 165 ~L~L~~~-~l~~-~~~~~~l~~L~~L~L~~-~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~~ 239 (531)
.++++++ ++.. |. +..+++|++|+|++ |.+.. ..+..++++++|++|+|++|...+.. .+.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677887 7877 66 88889999999986 77743 12234677888888888887543221 123455555555555
Q ss_pred ec
Q 009616 240 TY 241 (531)
Q Consensus 240 ~~ 241 (531)
|.
T Consensus 90 N~ 91 (347)
T 2ifg_A 90 NA 91 (347)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 157
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.47 E-value=5.6e-05 Score=77.24 Aligned_cols=41 Identities=32% Similarity=0.545 Sum_probs=37.5
Q ss_pred CCCCCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616 3 ETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF 43 (531)
Q Consensus 3 ~~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~l 43 (531)
+....|.|+.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 44567999999999999999999999999999999999874
No 158
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.45 E-value=3.8e-05 Score=78.38 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=38.1
Q ss_pred CCCCCCccCCCCChH----HHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616 2 DETVDADHISDLPTF----IIHHIMSFLSPKDVVRTGILSTTWRKF 43 (531)
Q Consensus 2 ~~~~~~D~is~LPd~----iL~~Ils~L~~~d~~r~s~vSkrWr~l 43 (531)
++....|.|+.||+| |+.+||+||+.++++++++|||+|+++
T Consensus 3 ~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred ChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 445567999999999 999999999999999999999999954
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.35 E-value=0.00028 Score=71.12 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=25.2
Q ss_pred eCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616 250 AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (531)
Q Consensus 250 ~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (531)
.+.+|+.+.+..+. ......+..++.++.+.+....+. ...+..+.+|+.+.+.
T Consensus 251 ~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 251 GCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp TCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEEC
T ss_pred ccccceeEEcCCCcceeeccccccccccceeccCceeec----cccccccccccccccc
Confidence 34555555554443 111223445555555555433222 2234456666666654
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.19 E-value=0.0002 Score=72.24 Aligned_cols=55 Identities=9% Similarity=-0.036 Sum_probs=23.0
Q ss_pred CCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616 251 VPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (531)
Q Consensus 251 ~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (531)
+.+|+.+.+.... ......+.++.+|+.+.+..+..+ .....+.+++.++.+...
T Consensus 229 ~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp TCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEEC
T ss_pred cCCCceEEECCCceecccccccccccceeEEcCCCcce--eeccccccccccceeccC
Confidence 3445555444332 111123445555555555433221 112234455555555443
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.97 E-value=0.00019 Score=67.74 Aligned_cols=59 Identities=22% Similarity=0.132 Sum_probs=30.9
Q ss_pred CCCccEEEecCCcCCC----CcCCCCCCccCEEEeeeEEechH-hHHHHHhCCcccceEEeeecCC
Q 009616 160 AKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVNDQ-MVQSLVRECRVLEDLSFFYCFG 220 (531)
Q Consensus 160 ~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~~-~l~~~l~~~~~Le~L~L~~c~~ 220 (531)
+++|++|+|++|.+.+ +..+..+++|+.|+|++|.+.+. .+.. +..+ .|++|+|.+|+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSL 232 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTT
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcC
Confidence 4566666666666655 12223566666666666666321 2222 1222 566666666554
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.94 E-value=0.0012 Score=66.43 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=34.0
Q ss_pred ccCCCCccEEEecCCc---CCC--CcCCCCCCccCEEEeeeEE--echHhHHHHHhCCcccceEEeeecCC-cceeeccc
Q 009616 157 IFSAKLLTSLKLFGCK---LEQ--PSHCANLQSLKKLSLDEVY--VNDQMVQSLVRECRVLEDLSFFYCFG-LKRLRISE 228 (531)
Q Consensus 157 l~~~~~L~~L~L~~~~---l~~--~~~~~~l~~L~~L~L~~~~--~~~~~l~~~l~~~~~Le~L~L~~c~~-~~~l~~~~ 228 (531)
+.+|.+|+.+.+..+. +.. ...+.++.+|+.+.+..+- +.. ..+..|.+|+.+.+..... ++.....+
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~----~aF~~c~~L~~i~lp~~~~~I~~~~F~~ 158 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDS----EAFHHCEELDTVTIPEGVTSVADGMFSY 158 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECT----TTTTTCTTCCEEECCTTCCEECTTTTTT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehh----hhhhhhcccccccccceeeeecccceec
Confidence 3456667777665542 211 2334445555554443221 111 1134566666666532211 11122234
Q ss_pred cccccEEEEE
Q 009616 229 AHKLKSLILR 238 (531)
Q Consensus 229 l~~L~~L~l~ 238 (531)
|.+|+.+.+.
T Consensus 159 c~~L~~i~~~ 168 (394)
T 4gt6_A 159 CYSLHTVTLP 168 (394)
T ss_dssp CTTCCEEECC
T ss_pred cccccccccc
Confidence 4555555554
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.75 E-value=0.00058 Score=64.43 Aligned_cols=13 Identities=23% Similarity=0.048 Sum_probs=6.9
Q ss_pred CccEEEEeCCCCC
Q 009616 275 HLRKLVLFLPHFN 287 (531)
Q Consensus 275 ~L~~L~L~~~~~~ 287 (531)
+|+.|+|++|.++
T Consensus 221 ~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 221 KLEELWLDGNSLC 233 (267)
T ss_dssp CCSEEECTTSTTG
T ss_pred CcceEEccCCcCc
Confidence 5555555555554
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.67 E-value=0.019 Score=57.55 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=26.6
Q ss_pred eCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616 250 AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII 307 (531)
Q Consensus 250 ~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~ 307 (531)
++++|+.+.+...- .-....|.+|++|+.+.|..+ ++ ..-...+.+|.+|+.+.|.
T Consensus 286 ~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 286 NCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEC
T ss_pred cccccccccCCCcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEEC
Confidence 45566666654333 111224555666666665322 22 1122345556666666653
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.85 E-value=0.032 Score=49.64 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=13.6
Q ss_pred HhHHHHHhCCcccceEEeeec
Q 009616 198 QMVQSLVRECRVLEDLSFFYC 218 (531)
Q Consensus 198 ~~l~~~l~~~~~Le~L~L~~c 218 (531)
..+..++.+-+.|++|+|+++
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~n 51 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNM 51 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTC
T ss_pred HHHHHHHhcCCCccEEECCCC
Confidence 345666666677777777654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.22 E-value=0.17 Score=49.96 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=6.6
Q ss_pred CCCCccCEEEee
Q 009616 180 ANLQSLKKLSLD 191 (531)
Q Consensus 180 ~~l~~L~~L~L~ 191 (531)
..+.+++...+.
T Consensus 155 ~~~~~l~~~~~~ 166 (379)
T 4h09_A 155 YKAENLEKIEVS 166 (379)
T ss_dssp TTCTTCCEEEEC
T ss_pred cccccccccccc
Confidence 445566665554
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.16 E-value=0.14 Score=50.56 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=60.2
Q ss_pred HhCCcccceEEeeecCC-cceeeccccccccEEEEEeecccccee-eeeCCcccEEEecccc-ccceeeccCCCCccEEE
Q 009616 204 VRECRVLEDLSFFYCFG-LKRLRISEAHKLKSLILRFTYQELESV-EIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLV 280 (531)
Q Consensus 204 l~~~~~Le~L~L~~c~~-~~~l~~~~l~~L~~L~l~~~~~~l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~ 280 (531)
...|..|+.+.+...-. ++.-...++..|+.+.+..+-..+... ..++.+|+.+.+.... ......|.+|++|+.+.
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEE
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccccceecccccccccccccccc
Confidence 45667777776643311 112223356777777765432111111 1256777777776554 11223577888888888
Q ss_pred EeCCCCChhhhhhhhcCCCCCcEEEecc
Q 009616 281 LFLPHFNDQEFHPLISKFPLLEDLSIIS 308 (531)
Q Consensus 281 L~~~~~~~~~~~~~l~~~~~L~~L~L~~ 308 (531)
+..+.++ ......+.+|.+|+.+.|..
T Consensus 293 l~~~~i~-~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 293 MDNSAIE-TLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp ECCTTCC-EECTTTTTTCTTCCEEECCT
T ss_pred ccccccc-eehhhhhcCCCCCCEEEcCc
Confidence 8766655 23345577888888888853
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.77 E-value=0.041 Score=48.98 Aligned_cols=98 Identities=11% Similarity=0.196 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHc--CCcEEEEeee-c-CCCccccCCccccCCCCccEEEecCCcCCC------CcCCCCCCccCEEEe
Q 009616 121 SPLFDKWVELAMEN--GVKELDFEVI-T-DKNSVNALPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSL 190 (531)
Q Consensus 121 ~~~~~~wl~~~~~~--~l~~L~L~~~-~-~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L 190 (531)
..+++.++..+... .+++|+|+.. . +......+-..+..-++|+.|+|++|.+.. ...+..-+.|++|+|
T Consensus 26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 34566777666543 5777776531 0 000111222233344677777777777654 111123466777777
Q ss_pred eeEEechHhHHHH---HhCCcccceEEeeec
Q 009616 191 DEVYVNDQMVQSL---VRECRVLEDLSFFYC 218 (531)
Q Consensus 191 ~~~~~~~~~l~~~---l~~~~~Le~L~L~~c 218 (531)
+.|.+++.+...+ +..-+.|++|+|++|
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 7777755444433 333445666666543
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.31 E-value=0.51 Score=38.77 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=31.7
Q ss_pred cCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEe
Q 009616 152 ALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV 195 (531)
Q Consensus 152 ~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~ 195 (531)
.+|..+. .+|++|+|++|.+.. +..+..+++|++|+|.+|.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 6665432 468899999998877 34456788899999988877
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=72.86 E-value=2.1 Score=34.96 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=21.5
Q ss_pred CccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccc
Q 009616 275 HLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL 309 (531)
Q Consensus 275 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c 309 (531)
+|+.|+|++|.++. .....+..+++|+.|+|.++
T Consensus 32 ~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-LPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCc-cChhhhhhccccCEEEecCC
Confidence 56677777666662 33445566677777777764
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=34.48 E-value=29 Score=22.12 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=13.7
Q ss_pred CCccCCCCChHHHHHHhcC
Q 009616 6 DADHISDLPTFIIHHIMSF 24 (531)
Q Consensus 6 ~~D~is~LPd~iL~~Ils~ 24 (531)
+.+-|+.||.||-..|+|-
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 3445788888888888774
Done!