Query 009617
Match_columns 531
No_of_seqs 454 out of 2854
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 09:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.1E-44 3.9E-49 365.6 37.0 423 100-530 8-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.8E-37 6E-42 309.5 20.2 386 100-512 24-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 4.7E-35 1.6E-39 290.8 33.6 356 103-506 25-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 6.6E-31 2.2E-35 264.9 26.1 386 124-518 34-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.2E-31 4E-36 260.5 17.0 345 107-497 3-362 (375)
6 2xut_A Proton/peptide symporte 100.0 1E-27 3.4E-32 243.6 23.6 153 125-280 34-197 (524)
7 2cfq_A Lactose permease; trans 99.9 6.1E-29 2.1E-33 244.5 6.6 359 120-519 23-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 6.4E-14 2.2E-18 139.0 14.4 158 120-280 268-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.7E-12 9.4E-17 126.7 12.9 148 126-279 281-430 (438)
10 2cfq_A Lactose permease; trans 99.4 7E-13 2.4E-17 129.9 8.1 142 144-286 262-405 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.3 6.8E-12 2.3E-16 125.8 13.0 153 124-280 303-470 (491)
12 4gc0_A D-xylose-proton symport 99.2 1.5E-10 5E-15 116.1 15.9 165 120-286 293-468 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1.2E-10 4.1E-15 112.3 2.6 139 124-268 219-363 (375)
14 2xut_A Proton/peptide symporte 98.9 1E-08 3.6E-13 103.5 14.8 120 383-510 74-197 (524)
15 2g9p_A Antimicrobial peptide l 53.3 5.5 0.00019 19.3 1.0 14 160-173 2-15 (26)
16 2dw3_A Intrinsic membrane prot 31.7 78 0.0027 21.2 4.2 36 484-519 26-61 (77)
17 3mkt_A Multi antimicrobial ext 28.7 3.7E+02 0.013 25.2 23.0 31 213-243 143-173 (460)
18 4dve_A Biotin transporter BIOY 26.1 1.2E+02 0.0042 25.0 5.6 25 147-171 99-123 (198)
19 3arc_T Photosystem II reaction 25.2 69 0.0024 17.3 2.5 11 276-286 18-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.1e-44 Score=365.59 Aligned_cols=423 Identities=33% Similarity=0.580 Sum_probs=332.0
Q ss_pred cchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcc------hhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhh
Q 009617 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAEN------TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173 (531)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~------~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 173 (531)
++.+.+.++.+++.+..++|.+.++..+|.+.++++.+.. ....|++.+++.+|..++++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4556677777888999999999999999999998854321 1234899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHH------------------HhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHH
Q 009617 174 FQLDAVPLAAGAFLCA------------------TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235 (531)
Q Consensus 174 ~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 235 (531)
++++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999998 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCC-------CCchhHHHHHHhHHHHHHHHHHhcccccchhHHHHhCChHHHHHHHHHHhCcc
Q 009617 236 QLFICVGILAALVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKE 308 (531)
Q Consensus 236 ~~~~~~G~~~g~~~~~~l~~-------~~~gwr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (531)
+.+..+|.++++.++..+.. ...+||+.+.+..+..++..+..+++||+|+|+..+++.+++.+.+++...++
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 99999999998888766542 12579999999898888888888999999999999999999988887765544
Q ss_pred chHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCChhh----------
Q 009617 309 RVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV---------- 378 (531)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------- 378 (531)
...++..+.++..+..+ +.......++. +...+......+.++.+.....+|.+.+.+..+.....
T Consensus 248 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 248 LATQAVQEIKHSLDHGR-KTGGRLLMFGV---GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV 323 (491)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTHHHHSCC---THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhh-hhhhHHHHhcc---cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH
Confidence 33333222222111111 11111222222 23344445556666777888888999988887776542
Q ss_pred ----HHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCccccccccccccc
Q 009617 379 ----AASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIF 454 (531)
Q Consensus 379 ----~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (531)
.......+.||+|||+.++.+...+.++++.+....... ......++..+++..++..+..++.+.+.+|++
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~f 399 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF 399 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 122333458999999999999888888887776554322 234445555666667777788888888999999
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH------hhccchhhHHHHHHHHHHHHHhheecccCCCCCHHHHHHhhC
Q 009617 455 ASRIRAKAVALSLGMHWISNFVIGLYFLSVVN------KFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERALN 528 (531)
Q Consensus 455 p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (531)
|++.|++++|+.+.++.+++++++.+.+.+.+ ..+....|++++++++++.++.++++||||+|++||+|+.+|
T Consensus 400 Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 400 PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 99999999999999999999999888776543 345667888999999999999999999999999999999988
Q ss_pred CC
Q 009617 529 PV 530 (531)
Q Consensus 529 ~~ 530 (531)
++
T Consensus 480 ~~ 481 (491)
T 4gc0_A 480 PE 481 (491)
T ss_dssp --
T ss_pred CC
Confidence 53
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.8e-37 Score=309.54 Aligned_cols=386 Identities=13% Similarity=0.090 Sum_probs=279.8
Q ss_pred cchhHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhH
Q 009617 100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV 179 (531)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 179 (531)
+..+..+..+++..+..+++...+.+.+|.+.+++ .+..+. |++.+++.+++.++++++|+++||+|||++++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34566777788888889999999999999999999 999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----hchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009617 180 PLAAGAFLCAT----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255 (531)
Q Consensus 180 ~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 255 (531)
+++++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|++++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCch-hHHHHHHhHHHHHHHHH-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhh
Q 009617 256 NPLW-WRTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFD 333 (531)
Q Consensus 256 ~~~g-wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (531)
. .| ||+.|++.+++.++..+ ..+++||+|+....+++++.. +. .+.. ..+++++....++...++
T Consensus 181 ~-~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~-~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 181 W-FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK---------ND--YPDD-YNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp H-TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC---------CC----------------CCTHHHHHH
T ss_pred H-hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc---------cc--cccc-chhhhhcccccccchHHH
Confidence 3 66 99999999988866544 445678877632111111000 00 0000 000000011111111456
Q ss_pred hhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhH--------------HHHHHHHhhhc--CccHHH
Q 009617 334 LFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVA--------------ASALVGAANVF--GRKNLL 396 (531)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--------------~~~~~~~~~~~--gr~~~~ 396 (531)
+++++..+...+...+... .......+.+.++++ .|++.... ....+.+.||+ +||+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 6666655554444333322 244455566666665 67776522 22334468999 998888
Q ss_pred HHHhHHHH-HHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHH-HH
Q 009617 397 TFSFTGMA-ASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWI-SN 474 (531)
Q Consensus 397 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~ 474 (531)
..+.++.. ++.+++.+. ...+.+...+..++.+.+.. ...+....+..|.+|++.|++++|+.+.+.++ |.
T Consensus 324 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWMN------PAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp HHHHHHHHHHHHHHTTSC------CTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------cccCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 77665555 444433221 11122333333333333332 33445556889999999999999999999999 99
Q ss_pred HHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheec
Q 009617 475 FVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNV 512 (531)
Q Consensus 475 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 512 (531)
+++|.+.|.+.+..|+...|.+.+++.+++.++.+...
T Consensus 397 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888877776665543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=4.7e-35 Score=290.77 Aligned_cols=356 Identities=16% Similarity=0.130 Sum_probs=269.5
Q ss_pred hHHHHHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHH
Q 009617 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA 182 (531)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 182 (531)
+..+..+++..+..+++....++..|.+.+++|++..+. |++.+++.+++.++++++|+++||+|||++++++.++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 445556677778888888899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccC-CCCc
Q 009617 183 AGAFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-GNPL 258 (531)
Q Consensus 183 ~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~~ 258 (531)
++.+++ +++++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.++++++++.+. +...
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 889999999999999999999999999999999999999999999999999999999999999987 4422
Q ss_pred h------------------------hHHHHHHhHHHHHHHHHHhcc--cccchhHHHHhCChHHHHHHHHHHhCccchHH
Q 009617 259 W------------------------WRTMFGLAAIPSILLALGMGL--SPESPRWLFQQGKKSEAEKSIQTLYGKERVSE 312 (531)
Q Consensus 259 g------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (531)
. ||+.|++.+++.++..+..++ .||+++.. +++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~------------------ 241 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSD------------------ 241 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCC------------------
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccc------------------
Confidence 2 999998888777655544433 35544310 000
Q ss_pred HHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHHc-CCChhhH-----------
Q 009617 313 VMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSV-FRSV-GIESDVA----------- 379 (531)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~----------- 379 (531)
+++++.+.+++++++++..+...+...+.... ......+.+.+ .++. |++....
T Consensus 242 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 308 (438)
T 3o7q_A 242 ---------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCF 308 (438)
T ss_dssp ---------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred ---------ccccchhhhHHHHHhChHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHH
Confidence 01112233456777777776665554444332 33444455555 5554 7776522
Q ss_pred ---HHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccCh
Q 009617 380 ---ASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFAS 456 (531)
Q Consensus 380 ---~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 456 (531)
....+.+.||+|||+.+..+.++.+++.+++.+. .....++...+.+.+.+ ...+....+..|.+|+
T Consensus 309 ~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 309 FIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHT-THHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHHH-HHHHHHHHHHHhhccc
Confidence 2233446899999999998888877776666542 12223333344444433 3456677687888886
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-cchhhHHHHHHHHHHHH
Q 009617 457 RIRAKAVALSLGMHWISNFVIGLYFLSVVNKFG-ISTVYLGFATVCLLAVL 506 (531)
Q Consensus 457 ~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~ 506 (531)
+ ++.+.++.. ...++++++|.+.|.+.+..| +...|.+.+++.++..+
T Consensus 379 ~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 379 D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 6 888888877 678999999999999999999 88888876655544444
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=6.6e-31 Score=264.87 Aligned_cols=386 Identities=13% Similarity=0.027 Sum_probs=238.1
Q ss_pred hhhHHHHHHh-----cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhh-ccchhhhhhhhHHHHHHHHHHHHhchHHHH
Q 009617 124 NGALEYLAKD-----LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQSVQTM 197 (531)
Q Consensus 124 ~~~~~~i~~~-----~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (531)
....+++.++ +|.+..+. +++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL 111 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHH
T ss_pred HHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3455666666 99999999 999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccchhhhhhhhcCCccc--cchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHH
Q 009617 198 IIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275 (531)
Q Consensus 198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~ 275 (531)
+++|+++|++.+...+...++++|++|+++ |+.++++++.+.++|.+++|.+++.+.+. .|||+.|++.++..++..
T Consensus 112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-AGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 77788889999999999999999998754 789999999877766555
Q ss_pred HHhccc-ccchh----HHHHhCChHHHHHHHHH----------------HhCccchHHHHHH---------HHHhccCCC
Q 009617 276 LGMGLS-PESPR----WLFQQGKKSEAEKSIQT----------------LYGKERVSEVMLD---------LTNAGQGSA 325 (531)
Q Consensus 276 ~~~~~~-~e~~~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---------~~~~~~~~~ 325 (531)
+..++. ++..+ ....+.+.++..+..+. ..+..+.+..... ........+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (491)
T 4aps_A 191 LVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMIS 270 (491)
T ss_dssp HHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhh
Confidence 444332 21110 00001111222221111 0000000000000 000000000
Q ss_pred CCccchhhhhccchhHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCC---h-----------hhHHHHHHHHhhhc
Q 009617 326 EPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIE---S-----------DVAASALVGAANVF 390 (531)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~---~-----------~~~~~~~~~~~~~~ 390 (531)
.++....+..+.................. .....+.+.+..+ .+.+ . .......+.+.||+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 346 (491)
T 4aps_A 271 SVKVTSTEHLRVVSYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW 346 (491)
T ss_dssp -----------CTTHHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 00000011111111222222222222221 1122223333332 3333 1 12334445578999
Q ss_pred CccHHHH-----HHhHHHHHHHHHHHHHhhccc-ccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHH
Q 009617 391 GRKNLLT-----FSFTGMAASMLLLSLSFTWKV-LAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVA 464 (531)
Q Consensus 391 gr~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 464 (531)
+||+... .+.++.+++++++........ ....+.+......++.+.+.+ ...+....++.|.+|++.|+++.|
T Consensus 347 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g 425 (491)
T 4aps_A 347 KKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMS 425 (491)
T ss_dssp TTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTH
T ss_pred hccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHH
Confidence 9986544 555555555555544321111 011123333333444444433 345566679999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhheecccCCCC
Q 009617 465 LSLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGR 518 (531)
Q Consensus 465 ~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (531)
+.+....+|.+++|.+.+.+.+ .++...|...+++++++.++.+.+.++.+++
T Consensus 426 ~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 426 MWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888754 4667788888888888777766666655443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=1.2e-31 Score=260.52 Aligned_cols=345 Identities=16% Similarity=0.105 Sum_probs=245.2
Q ss_pred HHHHHHHHHhhHhHHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHH
Q 009617 107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186 (531)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 186 (531)
..+++..+...++...+.+.+|.+.+++|.+..+. +++.+++.+++.++++++|+++||+|||+++..+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 44566777788888899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHH
Q 009617 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL 266 (531)
Q Consensus 187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~ 266 (531)
+.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+. .+||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998854 699999999
Q ss_pred hHHHHHHHHH-HhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHH
Q 009617 267 AAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSV 345 (531)
Q Consensus 267 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (531)
.+++.++..+ ..+++||+++.. ++ +++.+.+++++++++..+...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD---AP------------------------------RTRLLTSYKTLFGNSGFNCYLL 206 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT---CC------------------------------CCCTTTCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCC---cc------------------------------cccHHHHHHHHhcCcchHHHHH
Confidence 9888876665 445567776421 00 0112345566777665555444
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHH-cCCChhhHH----------HHHHHHhhhcCccH--HHHHHhHH-HHHHHHHHH
Q 009617 346 GAALFLFQQLAGINAVVYYSTSVFRS-VGIESDVAA----------SALVGAANVFGRKN--LLTFSFTG-MAASMLLLS 411 (531)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~----------~~~~~~~~~~gr~~--~~~~~~~~-~~~~~~~~~ 411 (531)
...+.... ......+.+.+.++ .|.+....+ .....+.+++.+|. ....+... ...+...+.
T Consensus 207 ~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~ 282 (375)
T 2gfp_A 207 MLIGGLAG----IAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWI 282 (375)
T ss_dssp HHHHHHHH----HHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333222 23333333333322 444433211 11122234443332 22222222 122221111
Q ss_pred HHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Q 009617 412 LSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVNKFGIS 491 (531)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~ 491 (531)
.... ...+.+...+..++.+.+.+. ..+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+..++.
T Consensus 283 ~~~~----~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 356 (375)
T 2gfp_A 283 PDWF----GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGS 356 (375)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHH
T ss_pred Hhhh----ccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 1100 000222233334444444443 45566668889998 88999999999999999999999999998877766
Q ss_pred hhhHHH
Q 009617 492 TVYLGF 497 (531)
Q Consensus 492 ~~~~~~ 497 (531)
..+.+.
T Consensus 357 ~~~~~~ 362 (375)
T 2gfp_A 357 LGLLMT 362 (375)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1e-27 Score=243.63 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=137.7
Q ss_pred hhHHHHHHhcC------CCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-cchhhhhhhhHHHHHHHHHHHHhc-hHHH
Q 009617 125 GALEYLAKDLG------IAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQT 196 (531)
Q Consensus 125 ~~~~~i~~~~~------~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~ 196 (531)
...+++.+++| .+..+. +++.+++.++..++++++|+++||+ |||+++.++.++++++.+++++++ +++.
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG 111 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 34566788899 999999 9999999999999999999999999 999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHH---HHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHH
Q 009617 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV---NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL 273 (531)
Q Consensus 197 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~ 273 (531)
+++.|++.|++.+...+...+++.|++|+++|+++.+. +..+.++|.+++|.+++.+.+. .|||+.|++.+++.++
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-FGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877666 8899999999999999988744 6899999998888766
Q ss_pred HHHHhcc
Q 009617 274 LALGMGL 280 (531)
Q Consensus 274 ~~~~~~~ 280 (531)
..+..++
T Consensus 191 ~~~~~~~ 197 (524)
T 2xut_A 191 ATVFFWL 197 (524)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 5554433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=6.1e-29 Score=244.47 Aligned_cols=359 Identities=14% Similarity=0.055 Sum_probs=221.9
Q ss_pred HHhhhhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHH---HHHHHhchH-
Q 009617 120 LGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA---FLCATAQSV- 194 (531)
Q Consensus 120 ~~~~~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~- 194 (531)
.....+.+|. +++++|.+..+. |++.+++.+++.++++++|+++||+|||++++++..+++++. ..+++++..
T Consensus 23 ~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2cfq_A 23 MGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554 667799999999 999999999999999999999999999999998888776532 222333322
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCCc--cccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
..++..+++.|++.+..++.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..+
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCAL 178 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHH
Confidence 1244566676666655555545555555443 345777888877888899999999988864 579999998877765
Q ss_pred HHHHHhcccccchhHHHHhCChHHHHHHHHHHhCccchHHHHHHHHHhccCCCCCccchhhhhccchhHHHHHHHHHHHH
Q 009617 273 LLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLF 352 (531)
Q Consensus 273 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (531)
+..+..++.+|+++. +.+.++ .+ +.+.++....+++++++++..+...+.......
T Consensus 179 ~~~~~~~~~~~~~~~---~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T 2cfq_A 179 ILAVLLFFAKTDAPS---SATVAN----------AV-----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp THHHHSCSSCCCCSC---SSCSSS----------SS-----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccccc---cccccc----------cc-----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHH
Confidence 555555555443321 000000 00 000001111234556666655444333222211
Q ss_pred HHhhhHHHHHHhHHHHHHH-cCC---Ch--------------hhHHHHHHHHhhhcCccHHHHHHhHHHHHHHHHHHHHh
Q 009617 353 QQLAGINAVVYYSTSVFRS-VGI---ES--------------DVAASALVGAANVFGRKNLLTFSFTGMAASMLLLSLSF 414 (531)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~-~g~---~~--------------~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~ 414 (531)
. +.....+.+.++.+ .+. +. .......+.++||+|||+.+..+.++.+++.+++.+.
T Consensus 235 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~- 309 (417)
T 2cfq_A 235 T----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA- 309 (417)
T ss_dssp H----HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred H----HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-
Confidence 1 11221222322222 111 01 0122333456899999999887777766655444321
Q ss_pred hcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHhhccchh
Q 009617 415 TWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALS-LGMHWISNFVIGLYFLSVVNKFGISTV 493 (531)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~g~~~~~~g~~~~ 493 (531)
. +.+..++...+...+.. ...+....++.|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...
T Consensus 310 ------~-~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~ 381 (417)
T 2cfq_A 310 ------T-SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp ------C-SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred ------c-cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence 1 22222222222222222 12223355889999999999999994 888899999999999999998888888
Q ss_pred hHHHHHHHHHHHHHhheecccCCCCC
Q 009617 494 YLGFATVCLLAVLYIAVNVVETKGRS 519 (531)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (531)
|.+.+++++++.++.+...+|+++.+
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 88888888888777666666655543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.53 E-value=6.4e-14 Score=138.97 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=132.7
Q ss_pred HHhhhhhHHHHHHh-cCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--cchhhhhhhhHHHH-HHHHHHHHh--ch
Q 009617 120 LGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTFQLDAVPLA-AGAFLCATA--QS 193 (531)
Q Consensus 120 ~~~~~~~~~~i~~~-~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~ 193 (531)
........|.+.++ +|.+..+. +++.+.+.++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+
T Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (451)
T 1pw4_A 268 RYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN 345 (451)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccC
Confidence 33444455655555 89999888 9999999999999999999999999 99999988877776 666666665 36
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHH-HHHHHHHhhcccCCCCchhHHHHHHhHHHHH
Q 009617 194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSI 272 (531)
Q Consensus 194 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~ 272 (531)
.+.+++..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+. .||+..|++.+++.+
T Consensus 346 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~ 424 (451)
T 1pw4_A 346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSI 424 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHH
Confidence 777888889999998888888899999999999999999999999999 999999999988754 689999999888877
Q ss_pred HHHHHhcc
Q 009617 273 LLALGMGL 280 (531)
Q Consensus 273 ~~~~~~~~ 280 (531)
+..+..++
T Consensus 425 ~~~~~~~~ 432 (451)
T 1pw4_A 425 LAVILLIV 432 (451)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.37 E-value=2.7e-12 Score=126.66 Aligned_cols=148 Identities=13% Similarity=0.007 Sum_probs=122.3
Q ss_pred hHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHH
Q 009617 126 ALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA 204 (531)
Q Consensus 126 ~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 204 (531)
..++ +.+.+|.+..+. ++..+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++.. ++.
T Consensus 281 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 357 (438)
T 3o7q_A 281 LIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLC 357 (438)
T ss_dssp HHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHH
T ss_pred HHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHH
Confidence 3344 555569999988 999999999999999999999999999999999999999999998888887765544 888
Q ss_pred HhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCch-hHHHHHHhHHHHHHHHHHhc
Q 009617 205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLALGMG 279 (531)
Q Consensus 205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~g-wr~~f~~~~~~~~~~~~~~~ 279 (531)
|++.+..++....++.|.+|++ ++.+.++.. ...+|..++|.+.+.+.+. .| ++..|++.++..++..+..+
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-AGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-HTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 888888777 5568999999999998854 56 88888876665554444333
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=7e-13 Score=129.86 Aligned_cols=142 Identities=10% Similarity=0.036 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhhccchhhhhhhhcC
Q 009617 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS 223 (531)
Q Consensus 144 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 223 (531)
++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 77888888888999999999999999999999999888888888888888888888888888887777777788999999
Q ss_pred CccccchhHHH-HHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhHHHHHHHHHHhc-ccccchh
Q 009617 224 PTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-LSPESPR 286 (531)
Q Consensus 224 ~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~e~~~ 286 (531)
|++.|+.+.++ ++....+|.+++|.+++.+.+. .|++..|.+.+++.++..+..+ +.+|+++
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999998 4778889999999999988753 6789999888888766655443 4565443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.33 E-value=6.8e-12 Score=125.82 Aligned_cols=153 Identities=13% Similarity=0.022 Sum_probs=121.8
Q ss_pred hhhHH-HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhh-----hhhHHHHHHHHHHHHhc-----
Q 009617 124 NGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-----LDAVPLAAGAFLCATAQ----- 192 (531)
Q Consensus 124 ~~~~~-~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-----~~~~~~~~~~~~~~~~~----- 192 (531)
...++ +..+.++.+..+. +++.+...++..++.++.|++.||+|||+... .+.++.+++.++.++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred cHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444 4455577776666 88888899999999999999999999987665 77777777776666543
Q ss_pred ----hHHHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhH
Q 009617 193 ----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (531)
Q Consensus 193 ----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~ 268 (531)
+.+.+++.-++.|++.+...+....++.|.+|++.|+++.++......+|..+++.+.+.+.+ .++.+.|++.+
T Consensus 381 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~~~ 458 (491)
T 4aps_A 381 SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA--KSEVAYFSYFG 458 (491)
T ss_dssp CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG--SSTTHHHHHTH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 677788888999999999899999999999999999999999999999999999999998875 45677888888
Q ss_pred HHHHHHHHHhcc
Q 009617 269 IPSILLALGMGL 280 (531)
Q Consensus 269 ~~~~~~~~~~~~ 280 (531)
+++++..+..++
T Consensus 459 ~~~~~~~~~~~~ 470 (491)
T 4aps_A 459 LGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777665554444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.22 E-value=1.5e-10 Score=116.07 Aligned_cols=165 Identities=18% Similarity=0.069 Sum_probs=117.4
Q ss_pred HHhhhhhHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHHHHHHHHHHHHh-----chH
Q 009617 120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSV 194 (531)
Q Consensus 120 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~ 194 (531)
........+.+.++.+.+.... ........+...++.++.+++.||+|||+.++.+....+++.+..+.. ++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 370 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence 3344446677888888887776 677777788888999999999999999999999988888877665543 122
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCC-----CchhHHHHHHhHH
Q 009617 195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-----PLWWRTMFGLAAI 269 (531)
Q Consensus 195 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-----~~gwr~~f~~~~~ 269 (531)
..++..-+..+.......+....+.+|.+|.+.|++++++......+|.++++.+...+.+. ..++.+.|++.++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~ 450 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC 450 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 22222222222222224466778999999999999999999999999988888776655421 1345567788888
Q ss_pred HHHHHHH-Hhcccccchh
Q 009617 270 PSILLAL-GMGLSPESPR 286 (531)
Q Consensus 270 ~~~~~~~-~~~~~~e~~~ 286 (531)
++++..+ .++++||+..
T Consensus 451 ~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 451 MGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHheecCCCC
Confidence 7766555 4466899864
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.98 E-value=1.2e-10 Score=112.31 Aligned_cols=139 Identities=16% Similarity=0.113 Sum_probs=106.3
Q ss_pred hhhHHH-HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhHHhhhhhccchhhhhhhhHH-HHHHHH--HHHH--hchHHHH
Q 009617 124 NGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP-LAAGAF--LCAT--AQSVQTM 197 (531)
Q Consensus 124 ~~~~~~-i~~~~~~s~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~l 197 (531)
....|. +++++|.+..+. +++.+...++..++.++.+++.||+|++.. .+..+ ..++.. .... .++.+.+
T Consensus 219 ~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (375)
T 2gfp_A 219 EACSGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTL 294 (375)
T ss_dssp HHHCSCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHH
Confidence 334444 455588888888 999999999999999999999999988332 23222 222221 2222 2467777
Q ss_pred HHHHHHHHhhhhhccchhhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHhH
Q 009617 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA 268 (531)
Q Consensus 198 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~gwr~~f~~~~ 268 (531)
++..++.|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+. .+|+..+++.+
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~ 363 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT-GQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccHHHHHHH
Confidence 888899999999999999999999998 7899999999999999999999998887643 56777776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.93 E-value=1e-08 Score=103.46 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=89.3
Q ss_pred HHHHhhhc-CccHHHHHHhHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHhcCcccccccccccccChhhhhH
Q 009617 383 LVGAANVF-GRKNLLTFSFTGMAASMLLLSLSFTWKVLAPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAK 461 (531)
Q Consensus 383 ~~~~~~~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 461 (531)
.+.++||+ |||+.+..+.++.+++.+++.+.. .+.+..++..++.+.+.+ ...+...+++.|.+|+++|+.
T Consensus 74 ~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~ 145 (524)
T 2xut_A 74 GGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-------HSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSL 145 (524)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-------SCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHH
Confidence 34469999 999999999888888887776531 022333344444444433 345666678999999999977
Q ss_pred HHHH---HHHHHHHHHHHHHHhhHHHHHhhccchhhHHHHHHHHHHHHHhhe
Q 009617 462 AVAL---SLGMHWISNFVIGLYFLSVVNKFGISTVYLGFATVCLLAVLYIAV 510 (531)
Q Consensus 462 ~~g~---~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 510 (531)
+.+. .+...++|.+++|.+.+.+.+..||+..|.+.+++.+++.++.+.
T Consensus 146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 899999999999999999999899999999888777666655443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=53.26 E-value=5.5 Score=19.32 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=11.2
Q ss_pred hHHhhhhhccchhh
Q 009617 160 TGGSLADKFGRTRT 173 (531)
Q Consensus 160 ~~g~l~dr~Grr~~ 173 (531)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36888999999864
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=31.73 E-value=78 Score=21.18 Aligned_cols=36 Identities=3% Similarity=-0.127 Sum_probs=18.6
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHhheecccCCCCC
Q 009617 484 VVNKFGISTVYLGFATVCLLAVLYIAVNVVETKGRS 519 (531)
Q Consensus 484 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (531)
+....||..++.+...+.+++.-++-.++||+.+..
T Consensus 26 MlkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 26 MMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 333445555555444444444444556678766543
No 17
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=28.71 E-value=3.7e+02 Score=25.15 Aligned_cols=31 Identities=3% Similarity=-0.225 Sum_probs=17.4
Q ss_pred chhhhhhhhcCCccccchhHHHHHHHHHHHH
Q 009617 213 AIVPLYISEISPTEIRGALGSVNQLFICVGI 243 (531)
Q Consensus 213 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 243 (531)
..........+...+|.+...+......+-.
T Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (460)
T 3mkt_A 143 YLLFQALRSFTDGMSLTKPAMVIGFIGLLLN 173 (460)
T ss_dssp HHHHHHHTTTTCTTSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3344455566666667666666655544443
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=26.15 E-value=1.2e+02 Score=25.03 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhHHhhhhhccch
Q 009617 147 VSSLLAGATVGSFTGGSLADKFGRT 171 (531)
Q Consensus 147 ~s~~~~~~~i~~~~~g~l~dr~Grr 171 (531)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4457788889999999999997644
No 19
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=25.16 E-value=69 Score=17.34 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=6.7
Q ss_pred HHhcccccchh
Q 009617 276 LGMGLSPESPR 286 (531)
Q Consensus 276 ~~~~~~~e~~~ 286 (531)
....+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 34445678776
Done!