BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009619
         (530 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P33390|HMC3_DESVH Protein DVU_0534 OS=Desulfovibrio vulgaris (strain Hildenborough /
           ATCC 29579 / NCIMB 8303) GN=DVU_0534 PE=3 SV=1
          Length = 388

 Score = 33.5 bits (75), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 356 LCMVGLSAGAVQGSLSNYLAGKKDRLSVTIPSVSTSALGY 395
           LC V L+AG    S S YL G K   S   P+++T+ LGY
Sbjct: 58  LCGVALAAGGYVTSASCYLFGMKRYHSAVRPAITTAFLGY 97


>sp|Q7UWD1|SPEE_RHOBA Probable spermidine synthase OS=Rhodopirellula baltica (strain SH1)
           GN=speE PE=3 SV=1
          Length = 514

 Score = 33.1 bits (74), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 346 IHSLFYKAAELCMVGLSAGAVQGSLSNYLAGKKDRLSVTIPSVSTSALGYGAFLGLYANM 405
           +H L+     +   GL    + G+L++YL G        I  V  SALG+GA+L  Y   
Sbjct: 7   LHLLYLNVLVIATCGLIYELLAGTLASYLLGDSVTQFSLIIGVYLSALGFGAWLSQYVTT 66

Query: 406 R 406
           +
Sbjct: 67  K 67


>sp|Q5UNS9|COLL7_MIMIV Collagen-like protein 7 OS=Acanthamoeba polyphaga mimivirus
           GN=MIMI_L669 PE=4 SV=1
          Length = 1937

 Score = 32.3 bits (72), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 121 ELATGGGGGDIGKKINHG-GGDGGD--DDGDDDDYFDDFDDGDEGDEG 165
           ++   G  GDIG+K N G  GD GD  D G+  D  D    GD+GD+G
Sbjct: 409 DIGEKGDKGDIGEKGNKGEKGDKGDKGDIGEKGDKGDTGSKGDKGDKG 456


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 204,090,070
Number of Sequences: 539616
Number of extensions: 9560236
Number of successful extensions: 44489
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 40560
Number of HSP's gapped (non-prelim): 2460
length of query: 530
length of database: 191,569,459
effective HSP length: 122
effective length of query: 408
effective length of database: 125,736,307
effective search space: 51300413256
effective search space used: 51300413256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)