BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009620
(530 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q57837|Y392_METJA Zinc metalloprotease MJ0392 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0392 PE=1 SV=1
Length = 339
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 45/178 (25%)
Query: 274 LSTFDNLNLLTNGLPGALVTALV---IGVHELGHILAAKSTGVELGVPYFVPSWQIGSFG 330
L L+++ N + A++ L+ + +HELGH AK GV++ +P IG
Sbjct: 25 LVVIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP---IGGVA 81
Query: 331 AITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 390
+ +I +E L++ AGPL F +G VL +V F
Sbjct: 82 MMDKI-----PKEGELRIGIAGPLVSFIIGIVLLIVSQFF-------------------- 116
Query: 391 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 448
D+ +G P+ ++ G N IPA +DGGRI A+ +K
Sbjct: 117 ----------DININGYPLLYTLSLLNLMLG----GFNLIPAFPMDGGRILRAILSKK 160
>sp|P87294|TCP4_SCHPO Putative RNA polymerase II transcriptional coactivator
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16A10.02 PE=1 SV=1
Length = 136
Score = 35.0 bits (79), Expect = 1.4, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 55 RKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 114
+K ++LI V D+ DS +D E E+ + EN + +D++D ++ +++ D VEN
Sbjct: 78 KKLKQLIHEVDDSLGLVDSGSDSEDEIKEKAENNASLKNDEDDLNTKTENKTDDS-SVEN 136
>sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767
/ JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2
Length = 1616
Score = 34.3 bits (77), Expect = 2.5, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 67 TQTEPDSNNDKEKEVHDGQ--ENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADT 124
T+ E DSN+D + DG +++ + +D+ED+ P S D P+++ + N +DV
Sbjct: 705 TEDEEDSNDDVSAD-SDGNVSDDENMSTTDEEDEPKTPKSSED--PKMDEKENESDVL-- 759
Query: 125 KGGVQQDDGNGEVASGSPLP 144
+++ NG PLP
Sbjct: 760 -----EEEVNGSKVRDVPLP 774
>sp|Q59U81|SWR1_CANAL Helicase SWR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=SWR1 PE=3 SV=1
Length = 1641
Score = 34.3 bits (77), Expect = 2.8, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 93 SDQEDDKS-------QPDSQLDSQPQVENQINGNDVADTKGGVQQDDGNGEVASGS---- 141
SD+EDD S + D ++S + E ++NGN D +DD N E+ +GS
Sbjct: 754 SDEEDDVSISSNFENESDESMNSSDR-ELEVNGNGKIDKIASTDEDDSNVEIVNGSKVKD 812
Query: 142 -PLPGV 146
P+P +
Sbjct: 813 VPIPSL 818
>sp|Q9PNM6|Y1068_CAMJE Putative zinc metalloprotease Cj1068 OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=Cj1068 PE=3
SV=1
Length = 368
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 287 LPGALVTALVIGVHELGHILAAKSTGVELGV 317
L LV + +I HELGH LAA+S GV++ V
Sbjct: 23 LATVLVISFLIFFHELGHFLAARSLGVKVEV 53
>sp|Q9PKW7|Y344_CHLMU Putative zinc metalloprotease TC_0344 OS=Chlamydia muridarum
(strain MoPn / Nigg) GN=TC_0344 PE=3 SV=1
Length = 619
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 54/133 (40%), Gaps = 42/133 (31%)
Query: 289 GALVTALVIGVHELGHILAAKSTG--VELGVPYFVPS----------WQIGS--FGAITR 334
AL +I +HELGH+LAAK+ G VE F P+ ++IG+ FG R
Sbjct: 9 AALALGFLILIHELGHLLAAKAVGMTVESFSIGFGPALVRKKMGSIEYRIGAIPFGGYVR 68
Query: 335 I----RNIVSKREDLLK-------------------VAAAGPLAG-----FSLGFVLFLV 366
I RN ED K V AAGPLA F+ G + F
Sbjct: 69 IKGMDRNDKEISEDREKTVYDIPGGFFSKSPWKRIFVLAAGPLANILVALFAFGILYFSG 128
Query: 367 GFIFPPSDGIGIV 379
G P S+ IV
Sbjct: 129 GRTKPFSEHTSIV 141
>sp|O84075|Y072_CHLTR Putative zinc metalloprotease CT_072 OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=CT_072 PE=3 SV=1
Length = 619
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 289 GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR 334
AL +I +HELGH+LAAK+ G+ V S+ IG A+ R
Sbjct: 9 AALALGFLILIHELGHLLAAKAVGMS------VESFSIGFGPALVR 48
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,300,592
Number of Sequences: 539616
Number of extensions: 9410491
Number of successful extensions: 29882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 29317
Number of HSP's gapped (non-prelim): 612
length of query: 530
length of database: 191,569,459
effective HSP length: 122
effective length of query: 408
effective length of database: 125,736,307
effective search space: 51300413256
effective search space used: 51300413256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)