Query 009620
Match_columns 530
No_of_seqs 319 out of 1231
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b4r_A Putative zinc metallopr 99.9 2.4E-24 8.2E-29 210.1 14.0 120 288-449 42-161 (224)
2 2di4_A Zinc protease, cell div 69.6 2.8 9.5E-05 41.2 3.3 28 296-323 18-47 (238)
3 3cqb_A Probable protease HTPX 54.0 5.7 0.00019 33.8 2.0 12 295-306 84-95 (107)
4 2jsd_A Matrix metalloproteinas 48.0 8.2 0.00028 34.5 2.2 22 295-316 109-130 (160)
5 2xs4_A Karilysin protease; hyd 47.4 8.4 0.00029 34.8 2.2 20 295-314 116-135 (167)
6 2ovx_A Matrix metalloproteinas 45.7 7.8 0.00027 35.0 1.7 20 295-314 112-131 (159)
7 1hy7_A Stromelysin-1, MMP-3; m 44.4 10 0.00034 34.7 2.2 20 295-314 114-133 (173)
8 1cge_A Fibroblast collagenase; 41.2 10 0.00034 34.5 1.7 19 295-313 112-130 (168)
9 1hv5_A Stromelysin 3; inhibiti 36.9 13 0.00044 33.7 1.7 20 295-314 114-133 (165)
10 1i76_A MMP-8;, neutrophil coll 36.4 16 0.00054 33.1 2.2 20 295-314 113-132 (163)
11 1slm_A Stromelysin-1; hydrolas 32.6 16 0.00055 35.8 1.7 19 295-313 196-214 (255)
12 3c37_A Peptidase, M48 family; 31.4 19 0.00066 34.7 2.0 12 295-306 101-112 (253)
13 2y6d_A Matrilysin; hydrolase; 30.4 23 0.00078 32.5 2.2 22 295-316 116-137 (174)
14 2w15_A Zinc metalloproteinase 30.3 19 0.00065 33.4 1.7 17 294-310 136-152 (202)
15 1y93_A Macrophage metalloelast 30.2 19 0.00066 32.4 1.7 16 295-310 109-124 (159)
16 1rm8_A MMP-16, matrix metallop 29.7 24 0.00082 31.9 2.2 20 295-314 118-137 (169)
17 3ayu_A 72 kDa type IV collagen 29.6 20 0.00069 32.6 1.7 18 295-312 115-132 (167)
18 1c7k_A NCNP, zinc endoprotease 28.0 27 0.00092 31.4 2.2 11 296-306 79-89 (132)
19 2cki_A Ulilysin; metalloprotea 27.2 18 0.00062 35.7 1.0 11 296-306 164-174 (262)
20 1atl_A Atrolysin C; metalloend 26.8 25 0.00086 32.6 1.9 17 294-310 136-152 (202)
21 1bud_A Protein (acutolysin A); 26.5 24 0.00083 32.5 1.7 17 294-310 133-149 (197)
22 2ddf_A ADAM 17; hydrolase; HET 26.1 26 0.00088 33.6 1.9 17 294-310 182-198 (257)
23 1qua_A Acutolysin-C, hemorrhag 25.9 25 0.00087 32.4 1.7 16 294-309 135-150 (197)
24 1kuf_A Atrolysin E, metallopro 25.6 26 0.00088 32.6 1.7 17 294-310 138-154 (203)
25 1yp1_A FII; FII hydrolase; 1.9 25.4 26 0.00089 32.5 1.7 17 294-310 135-151 (202)
26 3b8z_A Protein adamts-5; alpha 25.0 27 0.00092 32.7 1.7 15 295-309 142-156 (217)
27 2ko4_A Mediator of RNA polymer 24.6 21 0.00072 29.8 0.8 27 143-170 33-65 (81)
28 830c_A MMP-13, MMP-13; matrix 24.0 29 0.001 31.8 1.7 21 295-315 114-134 (168)
29 2v4b_A Adamts-1; zymogen, prot 23.6 29 0.00099 34.1 1.7 17 294-310 143-159 (300)
30 2isb_A Fumarase, FUM-1; NP_069 22.6 66 0.0023 30.8 3.9 60 152-234 20-79 (192)
31 2rjp_A Adamts-4; metalloprotea 22.5 31 0.0011 34.2 1.7 17 294-310 143-159 (316)
32 3ma2_D Matrix metalloproteinas 22.2 33 0.0011 31.9 1.7 19 295-313 123-141 (181)
33 2rjq_A Adamts-5; metalloprotea 21.9 32 0.0011 35.0 1.7 17 294-310 143-159 (378)
34 4dd8_A Disintegrin and metallo 21.6 41 0.0014 31.4 2.2 15 295-309 134-148 (208)
35 2ero_A VAP-1, vascular apoptos 21.4 39 0.0013 35.3 2.2 19 293-311 145-163 (427)
36 1sat_A Serratia protease; para 20.5 39 0.0013 35.9 2.0 21 295-315 171-191 (471)
37 2i47_A ADAM 17; TACE-inhibitor 20.0 40 0.0014 32.9 1.9 17 294-310 188-204 (288)
No 1
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=2.4e-24 Score=210.07 Aligned_cols=120 Identities=30% Similarity=0.446 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceecccceEEecccccCCccceeeeeecchhhHHHHHHHHHHHH
Q 009620 288 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG 367 (530)
Q Consensus 288 p~aL~Ll~iL~iHElGH~laAr~~Gvk~s~P~fIP~i~LgtFGAvi~~~s~~~~RkalfdIAlAGPLAg~llAl~ll~iG 367 (530)
.++++++.++.+||+||+++||++|+++.... +.+||+++++++. .|+++++|++|||++|++++++++.+.
T Consensus 42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~i~------l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~~~~~~ 113 (224)
T 3b4r_A 42 VLFILLFVSVVLHELGHSYVAKKYGVKIEKIL------LLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIVLLIVS 113 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE------ECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccEE------EEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999544 4458999988763 458899999999999999998876654
Q ss_pred hhcCCCCCccccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhh
Q 009620 368 FIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR 447 (530)
Q Consensus 368 l~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~g~~v~lhPL~~agwinLvLtafNLLPigpLDGGRIl~Allgr 447 (530)
...+.. . .. ...+.+++|+|+++++|||+|++|||||||+++++++
T Consensus 114 ~~~~~~-------------~--------------------~~-~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~ 159 (224)
T 3b4r_A 114 QFFDIN-------------I--------------------NG-YPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSK 159 (224)
T ss_dssp TTCCCE-------------E--------------------TT-EEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred HHccCc-------------c--------------------hH-HHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence 321100 0 00 1234567999999999999999999999999999887
Q ss_pred HH
Q 009620 448 KA 449 (530)
Q Consensus 448 r~ 449 (530)
+.
T Consensus 160 ~~ 161 (224)
T 3b4r_A 160 KY 161 (224)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 2
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=69.62 E-value=2.8 Score=41.17 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHcC--CcccCcccccc
Q 009620 296 VIGVHELGHILAAKSTG--VELGVPYFVPS 323 (530)
Q Consensus 296 iL~iHElGH~laAr~~G--vk~s~P~fIP~ 323 (530)
++..||.||+++|...+ .++..-..+|.
T Consensus 18 ~vAyHEAGHAlva~~l~~~~pV~KVTIiPR 47 (238)
T 2di4_A 18 KIAIHEAGHALMGLVSDDDDKVHKISIIPR 47 (238)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCCCCEECC--
T ss_pred HHHHHHHHHHHHHHHcCCCCceeEEEEeec
Confidence 56789999999999987 66766667775
No 3
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=54.02 E-value=5.7 Score=33.78 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHH
Q 009620 295 LVIGVHELGHIL 306 (530)
Q Consensus 295 ~iL~iHElGH~l 306 (530)
..++.||+||+.
T Consensus 84 ~aVlaHElgH~~ 95 (107)
T 3cqb_A 84 EAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468999999974
No 4
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=48.04 E-value=8.2 Score=34.49 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009620 295 LVIGVHELGHILAAKSTGVELG 316 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gvk~s 316 (530)
..+++||+||.+=-..-..+.+
T Consensus 109 ~~v~~HEiGHaLGL~H~~~~~s 130 (160)
T 2jsd_A 109 FTVAAHEFGHALGLAHSTDPSA 130 (160)
T ss_dssp HHHHHHHHHHHHTCCCCCCTTC
T ss_pred HHHHHHHhHhhhcCCCCCCCCc
Confidence 4678999999986654444433
No 5
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=47.41 E-value=8.4 Score=34.84 Aligned_cols=20 Identities=30% Similarity=0.742 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009620 295 LVIGVHELGHILAAKSTGVE 314 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gvk 314 (530)
..+++||+||.+=-..-..+
T Consensus 116 ~~v~~HEiGHaLGL~H~~~~ 135 (167)
T 2xs4_A 116 ITVAAHEIGHLLGIEHSNVS 135 (167)
T ss_dssp HHHHHHHHHHHHTBCCCSCT
T ss_pred hhhHHHHHHHhhcCCCCCCC
Confidence 46789999999865444433
No 6
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=45.70 E-value=7.8 Score=35.03 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009620 295 LVIGVHELGHILAAKSTGVE 314 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gvk 314 (530)
..+++||+||.+=-..-..+
T Consensus 112 ~~va~HEiGHaLGL~Hs~~~ 131 (159)
T 2ovx_A 112 FLVAAHQFGHALGLDHSSVP 131 (159)
T ss_dssp HHHHHHHHHHHTTCCCCSCT
T ss_pred hhhhhhhhhhhhcCCCCCCC
Confidence 46789999998755443333
No 7
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=44.38 E-value=10 Score=34.68 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009620 295 LVIGVHELGHILAAKSTGVE 314 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gvk 314 (530)
..+++||+||.+=-..-..+
T Consensus 114 ~~v~~HEiGHaLGL~H~~~~ 133 (173)
T 1hy7_A 114 FLVAAHEIGHSLGLFHSANT 133 (173)
T ss_dssp HHHHHHHHHHHHTBCCCSCT
T ss_pred hhhHHHHHHHhhcCCCCCCC
Confidence 46789999999865444443
No 8
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=41.19 E-value=10 Score=34.55 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 009620 295 LVIGVHELGHILAAKSTGV 313 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gv 313 (530)
..+++||+||.+=-..-..
T Consensus 112 ~~v~~HEiGHaLGL~H~~~ 130 (168)
T 1cge_A 112 HRVAAHELGHSLGLSHSTD 130 (168)
T ss_dssp HHHHHHHHHHHTTCCCCSC
T ss_pred hhhhhhHhHhhhcCCCCCC
Confidence 4678999999875544333
No 9
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=36.89 E-value=13 Score=33.65 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009620 295 LVIGVHELGHILAAKSTGVE 314 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gvk 314 (530)
..+++||+||.+=-.....+
T Consensus 114 ~~v~~HEiGHaLGL~H~~~~ 133 (165)
T 1hv5_A 114 LQVAAHEFGHVLGLQHTTAA 133 (165)
T ss_dssp HHHHHHHHHHHTTCCCCSCT
T ss_pred hhhHHHHhHhhhCCCCCCCC
Confidence 46789999998755444333
No 10
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=36.35 E-value=16 Score=33.09 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009620 295 LVIGVHELGHILAAKSTGVE 314 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gvk 314 (530)
..+++||+||.+=-.....+
T Consensus 113 ~~v~~HE~GHalGl~H~~~~ 132 (163)
T 1i76_A 113 FLVAAHEFGHSLGLAHSSDP 132 (163)
T ss_dssp HHHHHHHHHHHHTBCCCSCT
T ss_pred hhhhHHHhhhhhcCCCCCCC
Confidence 45789999999865544433
No 11
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=32.65 E-value=16 Score=35.81 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 009620 295 LVIGVHELGHILAAKSTGV 313 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gv 313 (530)
..+++||+||.+=-..-..
T Consensus 196 ~~va~HEiGHaLGL~Hs~~ 214 (255)
T 1slm_A 196 FLVAAHEIGHSLGLFHSAN 214 (255)
T ss_dssp HHHHHHHHHHHTTCCCCSC
T ss_pred hhhhHHHHHHHhcCCCCCC
Confidence 4678999999976543333
No 12
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=31.38 E-value=19 Score=34.73 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH
Q 009620 295 LVIGVHELGHIL 306 (530)
Q Consensus 295 ~iL~iHElGH~l 306 (530)
.+++.||+||..
T Consensus 101 aaVLaHElgH~~ 112 (253)
T 3c37_A 101 AGVLAHEINHAV 112 (253)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468999999984
No 13
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=30.36 E-value=23 Score=32.51 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009620 295 LVIGVHELGHILAAKSTGVELG 316 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gvk~s 316 (530)
..+++||+||.+--.....+.+
T Consensus 116 ~~~~~HE~gH~lGl~h~~~~~s 137 (174)
T 2y6d_A 116 LYAATHELGHSLGMGHSSDPNA 137 (174)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred eehhhHHhHhhhcCCCCCCCCc
Confidence 4578999999986544443333
No 14
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=30.31 E-value=19 Score=33.39 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAKS 310 (530)
Q Consensus 294 l~iL~iHElGH~laAr~ 310 (530)
++..++||+||-+=+..
T Consensus 136 ~a~~~AHElGH~lG~~H 152 (202)
T 2w15_A 136 VAVTMAHELGHNLGIHH 152 (202)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhhcCCcc
Confidence 45788999999865443
No 15
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=30.16 E-value=19 Score=32.43 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 009620 295 LVIGVHELGHILAAKS 310 (530)
Q Consensus 295 ~iL~iHElGH~laAr~ 310 (530)
..+++||+||.+--..
T Consensus 109 ~~~~~HE~GH~lGl~H 124 (159)
T 1y93_A 109 FLTAVHEIGHSLGLGH 124 (159)
T ss_dssp HHHHHHHHHHHTTCCC
T ss_pred hhhhhhhhhhhhcCCC
Confidence 4568999999875543
No 16
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=29.65 E-value=24 Score=31.93 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009620 295 LVIGVHELGHILAAKSTGVE 314 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gvk 314 (530)
..+.+||+||.+--.....+
T Consensus 118 ~~~~~he~gh~lgl~h~~~~ 137 (169)
T 1rm8_A 118 FLVAVHELGHALGLEHSNDP 137 (169)
T ss_dssp HHHHHHHHHHHHTCCCCSCT
T ss_pred eeehhhhhhhhcCCCCCCCC
Confidence 35789999999866544433
No 17
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=29.56 E-value=20 Score=32.65 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 009620 295 LVIGVHELGHILAAKSTG 312 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~G 312 (530)
..+++||+||.+--....
T Consensus 115 ~~~~~HE~gH~lGl~H~~ 132 (167)
T 3ayu_A 115 FLVAAHAFGHAMGLEHSQ 132 (167)
T ss_dssp HHHHHHHHHHHTTEECCS
T ss_pred eeehhhhhHHhccCCCCC
Confidence 367899999987554333
No 18
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=28.05 E-value=27 Score=31.39 Aligned_cols=11 Identities=45% Similarity=0.851 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH
Q 009620 296 VIGVHELGHIL 306 (530)
Q Consensus 296 iL~iHElGH~l 306 (530)
.+.+||+||.+
T Consensus 79 ~v~aHE~GH~L 89 (132)
T 1c7k_A 79 RVTAHETGHVL 89 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred eEEeeeehhcc
Confidence 47899999986
No 19
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=27.21 E-value=18 Score=35.73 Aligned_cols=11 Identities=45% Similarity=0.761 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH
Q 009620 296 VIGVHELGHIL 306 (530)
Q Consensus 296 iL~iHElGH~l 306 (530)
-.++||+||++
T Consensus 164 ~TltHEvGH~L 174 (262)
T 2cki_A 164 RTATHEIGHWL 174 (262)
T ss_dssp HHHHHHHHHHT
T ss_pred chhhhhhhhhh
Confidence 57899999986
No 20
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=26.76 E-value=25 Score=32.59 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAKS 310 (530)
Q Consensus 294 l~iL~iHElGH~laAr~ 310 (530)
.+..++||+||-+=+..
T Consensus 136 ~a~~~AHElGHnlG~~H 152 (202)
T 1atl_A 136 MGVTMAHELGHNLGMEH 152 (202)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred eEEEehhhhccccCcee
Confidence 35688999999865443
No 21
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=26.46 E-value=24 Score=32.50 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAKS 310 (530)
Q Consensus 294 l~iL~iHElGH~laAr~ 310 (530)
++..++||+||-+=+..
T Consensus 133 ~a~~~AHElGH~lG~~H 149 (197)
T 1bud_A 133 VAITLAHEMAHNLGVSH 149 (197)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhhcCCcc
Confidence 35678999999875543
No 22
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=26.12 E-value=26 Score=33.58 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAKS 310 (530)
Q Consensus 294 l~iL~iHElGH~laAr~ 310 (530)
...+++||+||-+=+..
T Consensus 182 ~a~~~AHElGHnlG~~H 198 (257)
T 2ddf_A 182 ADLVTTHELGHNFGAEH 198 (257)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred eeeeeeeehhhhcCccc
Confidence 45778999999765543
No 23
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=25.89 E-value=25 Score=32.39 Aligned_cols=16 Identities=44% Similarity=0.532 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAK 309 (530)
Q Consensus 294 l~iL~iHElGH~laAr 309 (530)
.+..++||+||-+=+.
T Consensus 135 ~a~~~AHElGH~lG~~ 150 (197)
T 1qua_A 135 MAVTMAHELGHNLGMN 150 (197)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 4567899999976444
No 24
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=25.61 E-value=26 Score=32.61 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAKS 310 (530)
Q Consensus 294 l~iL~iHElGH~laAr~ 310 (530)
.+..++||+||-+=+..
T Consensus 138 ~a~~~AHElGH~lG~~H 154 (203)
T 1kuf_A 138 VAVTMTHELGHNLGMEH 154 (203)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHhhhhcCCCC
Confidence 45788999999865443
No 25
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=25.41 E-value=26 Score=32.48 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAKS 310 (530)
Q Consensus 294 l~iL~iHElGH~laAr~ 310 (530)
++..++||+||-+=+..
T Consensus 135 ~a~~~AHElGH~lG~~H 151 (202)
T 1yp1_A 135 MAVVMAHELGHNLGMLH 151 (202)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 35678999999865443
No 26
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=24.98 E-value=27 Score=32.66 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 009620 295 LVIGVHELGHILAAK 309 (530)
Q Consensus 295 ~iL~iHElGH~laAr 309 (530)
+..++||+||-+=+.
T Consensus 142 a~~~AHElGHnlG~~ 156 (217)
T 3b8z_A 142 AFTVAHEIGHLLGLS 156 (217)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred hhhhHhhhhhhcCCc
Confidence 467899999986544
No 27
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=24.60 E-value=21 Score=29.79 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=20.7
Q ss_pred CCCCC------CccccCCCCHhHHHHhhcccccc
Q 009620 143 LPGVK------QLDEYIRIPKETIDILKDQVFGF 170 (530)
Q Consensus 143 ~~~~~------~~~~~~~i~~ed~~~ik~~~Fg~ 170 (530)
+|||+ .+-..-.||++|+++||+ ++..
T Consensus 33 PpgVnTW~qI~el~qkk~i~~~~m~iik~-iy~~ 65 (81)
T 2ko4_A 33 PPNINTWQQVTALAQQKLLTPQDMEAAKE-VYKI 65 (81)
T ss_dssp CTTTCBHHHHHHHHTTTSSCHHHHHHHHH-HHHH
T ss_pred CCCcchHHHHHHHHHcCCCCHHHHHHHHH-HHHH
Confidence 67888 444556899999999999 6543
No 28
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=23.98 E-value=29 Score=31.83 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009620 295 LVIGVHELGHILAAKSTGVEL 315 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gvk~ 315 (530)
..+++||+||.+--..-..+-
T Consensus 114 ~~v~~hE~Gh~lGl~h~~~~~ 134 (168)
T 830c_A 114 FLVAAHEFGHSLGLDHSKDPG 134 (168)
T ss_dssp HHHHHHHHHHHTTBCCCSCTT
T ss_pred hhhhhhhhcchhcCCCCCCCc
Confidence 457899999997654444433
No 29
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=23.56 E-value=29 Score=34.15 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAKS 310 (530)
Q Consensus 294 l~iL~iHElGH~laAr~ 310 (530)
.+..++||+||-+=+..
T Consensus 143 ~a~t~AHElGHnlG~~H 159 (300)
T 2v4b_A 143 AAFTTAHELGHVFNMPH 159 (300)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred ceehhhhhhhhhcCCcC
Confidence 35779999999765543
No 30
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=22.63 E-value=66 Score=30.75 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=45.3
Q ss_pred cCCCCHhHHHHhhccccccceeeeccccccCceEEEEeccCCchHHHHHHHHHHHHhhhCCceEEEEEecCCCCCcEEEE
Q 009620 152 YIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVV 231 (530)
Q Consensus 152 ~~~i~~ed~~~ik~~~Fg~dtF~~t~~~~~~~gvi~rGnLR~~~e~~y~~l~~~l~~~fGd~y~lfl~~~~~~~kPv~~v 231 (530)
..|+++||++.+|- ++-|...|.+-.-++.+|+|+.+.|++ |.+. .-.-.++++++.
T Consensus 20 ~~Plt~e~v~~L~v----------------GD~V~LsG~i~taRDaAHkRl~e~l~~--Ge~l-----P~dl~g~~Iyy~ 76 (192)
T 2isb_A 20 RTPLVKDQILKLKV----------------GDVVYITGEIFTARDEAHARALEWMEE--GKEL-----PFSFDKGVVYHC 76 (192)
T ss_dssp ESSCCHHHHHHCCT----------------TCEEEEEEEEEECCHHHHHHHHHHHHH--TCCC-----SSCCTTCEEECB
T ss_pred CCCCCHHHHhhCCC----------------CCEEEEEEEEEEEhHHHHHHHHHHHHc--CCCC-----CcCCCCCEEEEe
Confidence 34889999999886 677888888888999999999999988 5442 112246777766
Q ss_pred EeC
Q 009620 232 VPR 234 (530)
Q Consensus 232 ~P~ 234 (530)
-|.
T Consensus 77 GP~ 79 (192)
T 2isb_A 77 GPL 79 (192)
T ss_dssp CCE
T ss_pred cCC
Confidence 555
No 31
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=22.47 E-value=31 Score=34.23 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAKS 310 (530)
Q Consensus 294 l~iL~iHElGH~laAr~ 310 (530)
.+.+++||+||-+=+..
T Consensus 143 ~a~t~AHElGHnlGm~H 159 (316)
T 2rjp_A 143 SAFTAAHQLGHVFNMLH 159 (316)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhhcCccC
Confidence 45789999999875543
No 32
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=22.21 E-value=33 Score=31.94 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 009620 295 LVIGVHELGHILAAKSTGV 313 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gv 313 (530)
..+.+||+||.+--.....
T Consensus 123 ~~v~~hE~Gh~lGl~hs~~ 141 (181)
T 3ma2_D 123 FLVAVHELGHALGLEHSSD 141 (181)
T ss_dssp HHHHHHHHHHHTTCCCCSC
T ss_pred eeeehhhccccccCCcCCC
Confidence 3578999999964433333
No 33
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=21.86 E-value=32 Score=34.96 Aligned_cols=17 Identities=35% Similarity=0.560 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAKS 310 (530)
Q Consensus 294 l~iL~iHElGH~laAr~ 310 (530)
++.+++||+||-+=+..
T Consensus 143 ~a~~~AHElGHnlGm~H 159 (378)
T 2rjq_A 143 AAFTVAHEIGHLLGLSH 159 (378)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred hhhhhhhhhhhhcCccC
Confidence 45789999999886543
No 34
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=21.63 E-value=41 Score=31.37 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q 009620 295 LVIGVHELGHILAAK 309 (530)
Q Consensus 295 ~iL~iHElGH~laAr 309 (530)
+..++||+||-+=+.
T Consensus 134 a~~~AHElGH~lG~~ 148 (208)
T 4dd8_A 134 ACTMAHEMGHNLGMD 148 (208)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCc
Confidence 467999999986543
No 35
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=21.36 E-value=39 Score=35.33 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 009620 293 TALVIGVHELGHILAAKST 311 (530)
Q Consensus 293 Ll~iL~iHElGH~laAr~~ 311 (530)
.++.+++||+||-+=+..-
T Consensus 145 ~~a~t~AHElGHnlG~~HD 163 (427)
T 2ero_A 145 LVAIAMAHEMGHNLGMDHD 163 (427)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCCccC
Confidence 3457899999998765543
No 36
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Probab=20.48 E-value=39 Score=35.88 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009620 295 LVIGVHELGHILAAKSTGVEL 315 (530)
Q Consensus 295 ~iL~iHElGH~laAr~~Gvk~ 315 (530)
..+++||+||.+=-..-+.+-
T Consensus 171 ~~va~HEiGHaLGL~Hs~~~~ 191 (471)
T 1sat_A 171 RQTFTHEIGHALGLSHPGDYN 191 (471)
T ss_dssp HHHHHHHHHHHHTCCCSSCCC
T ss_pred ceeeeeeccccccCCCCCCcc
Confidence 367899999998766555543
No 37
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=20.01 E-value=40 Score=32.92 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009620 294 ALVIGVHELGHILAAKS 310 (530)
Q Consensus 294 l~iL~iHElGH~laAr~ 310 (530)
.+.+++||+||-+=+..
T Consensus 188 ~a~~~AHElGHnlGm~H 204 (288)
T 2i47_A 188 ADLVTTHELGHNFGAEH 204 (288)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhhcCCcc
Confidence 45788999999865543
Done!