Query 009621
Match_columns 530
No_of_seqs 116 out of 144
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 09:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qyh_A CO-type nitrIle hydrata 70.0 2.6 9E-05 41.3 3.1 46 205-253 48-97 (226)
2 2pk2_A Cyclin-T1, protein TAT; 69.6 0.95 3.3E-05 45.9 0.0 6 124-129 281-286 (358)
3 1ypw_A Transitional endoplasmi 64.5 1.4 4.7E-05 48.9 0.0 6 123-128 774-779 (806)
4 3hht_A NitrIle hydratase alpha 62.0 5.5 0.00019 38.8 3.7 48 205-255 37-88 (216)
5 1ugp_A NitrIle hydratase alpha 45.5 9.5 0.00032 36.9 2.3 48 204-254 27-78 (203)
6 4fm4_A NitrIle hydratase alpha 45.1 9.6 0.00033 37.0 2.3 45 205-252 21-69 (209)
7 3a8g_A NitrIle hydratase subun 44.6 6 0.00021 38.4 0.8 48 204-254 30-81 (207)
8 2zzd_C Thiocyanate hydrolase s 43.7 11 0.00038 37.2 2.5 46 204-252 38-86 (243)
9 3oux_B LEF-1, lymphoid enhance 31.5 33 0.0011 28.0 3.0 10 142-151 15-24 (67)
10 2ca6_A RAN GTPase-activating p 18.6 34 0.0012 32.9 1.0 21 144-164 338-358 (386)
No 1
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=69.97 E-value=2.6 Score=41.25 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=35.7
Q ss_pred HHcCCcCHHHHHHHHH-hccC--Cc-hhHHHHhhcCcchhhhhhhhhccCchh
Q 009621 205 YEMGLVSSAQMVKFLA-INAR--PT-TTRFISRSLPQGISRAFIGRMLADPSF 253 (530)
Q Consensus 205 ~e~Glvssa~L~rFl~-L~~~--P~-~~~~l~R~lp~~lsrgfReRlLADP~F 253 (530)
+|.|+|+++.+.++++ ++.+ |. -++.+.|.+-. .+||.|||+||.=
T Consensus 48 ~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~D---p~FK~rLL~D~~a 97 (226)
T 3qyh_A 48 IEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVD---PAYKARLLADGTA 97 (226)
T ss_dssp HHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC---HHHHHHHHHCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCC---HHHHHHHHHCHHH
Confidence 6799999999999998 4443 32 26777887644 6999999999963
No 2
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=69.57 E-value=0.95 Score=45.86 Aligned_cols=6 Identities=67% Similarity=1.404 Sum_probs=0.0
Q ss_pred cCCCCC
Q 009621 124 TGGGGG 129 (530)
Q Consensus 124 ~ggggg 129 (530)
.||+||
T Consensus 281 ~~~~~~ 286 (358)
T 2pk2_A 281 QGGTGG 286 (358)
T ss_dssp ------
T ss_pred cCCCCC
Confidence 333333
No 3
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=64.52 E-value=1.4 Score=48.93 Aligned_cols=6 Identities=33% Similarity=0.800 Sum_probs=0.0
Q ss_pred ecCCCC
Q 009621 123 ATGGGG 128 (530)
Q Consensus 123 ~~gggg 128 (530)
.+++++
T Consensus 774 ~~~~~~ 779 (806)
T 1ypw_A 774 PSGNQG 779 (806)
T ss_dssp ------
T ss_pred CCcccc
Confidence 333333
No 4
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=62.02 E-value=5.5 Score=38.81 Aligned_cols=48 Identities=21% Similarity=0.386 Sum_probs=36.6
Q ss_pred HHcCCcCHHHHHHHHHh-ccC--Cc-hhHHHHhhcCcchhhhhhhhhccCchhhH
Q 009621 205 YEMGLVSSAQMVKFLAI-NAR--PT-TTRFISRSLPQGISRAFIGRMLADPSFLY 255 (530)
Q Consensus 205 ~e~Glvssa~L~rFl~L-~~~--P~-~~~~l~R~lp~~lsrgfReRlLADP~FLf 255 (530)
+|.|+|+++.+.++.+. +.. |. -++.+.|.+-. .+||.|||+||.=..
T Consensus 37 ~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~D---p~FK~rLL~Dp~aAi 88 (216)
T 3hht_A 37 IEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD---PAFKQRLLEDSETVL 88 (216)
T ss_dssp HHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHC---HHHHHHHHHCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC---HHHHHHHHHCHHHHH
Confidence 68999999999999986 333 32 26677777644 699999999997433
No 5
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=45.52 E-value=9.5 Score=36.85 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=35.9
Q ss_pred HHHcCCcCHHHHHHHHHh-ccC--C-chhHHHHhhcCcchhhhhhhhhccCchhh
Q 009621 204 AYEMGLVSSAQMVKFLAI-NAR--P-TTTRFISRSLPQGISRAFIGRMLADPSFL 254 (530)
Q Consensus 204 A~e~Glvssa~L~rFl~L-~~~--P-~~~~~l~R~lp~~lsrgfReRlLADP~FL 254 (530)
-++.|+|+++.+.++.+. +.. | +-++.+.|.+-. .+||.|||+|+.=.
T Consensus 27 L~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~D---p~fk~~Ll~d~~aA 78 (203)
T 1ugp_A 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD---PEFKKRLLADGTEA 78 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC---HHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCC---HHHHHHHHhChHHH
Confidence 378999999999999885 333 2 226677777544 69999999998643
No 6
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=45.10 E-value=9.6 Score=36.99 Aligned_cols=45 Identities=16% Similarity=0.420 Sum_probs=34.4
Q ss_pred HHcCCcCHHHHHHHHH-hccC--C-chhHHHHhhcCcchhhhhhhhhccCch
Q 009621 205 YEMGLVSSAQMVKFLA-INAR--P-TTTRFISRSLPQGISRAFIGRMLADPS 252 (530)
Q Consensus 205 ~e~Glvssa~L~rFl~-L~~~--P-~~~~~l~R~lp~~lsrgfReRlLADP~ 252 (530)
+|.|+|+++.+..|.+ ++.. | +-++.+.|.+-. ..||+|||+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~D---p~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTD---PVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC---HHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCC---HHHHHHHHHHHH
Confidence 5789999999999988 3432 3 226778887654 699999999984
No 7
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=44.63 E-value=6 Score=38.36 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=35.6
Q ss_pred HHHcCCcCHHHHHHHHHh-ccC--C-chhHHHHhhcCcchhhhhhhhhccCchhh
Q 009621 204 AYEMGLVSSAQMVKFLAI-NAR--P-TTTRFISRSLPQGISRAFIGRMLADPSFL 254 (530)
Q Consensus 204 A~e~Glvssa~L~rFl~L-~~~--P-~~~~~l~R~lp~~lsrgfReRlLADP~FL 254 (530)
-++.|+|+++.+.++.+. +.. | +-++.+.|.+-. .+||.|||+|+.=.
T Consensus 30 l~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~D---P~Fk~rLL~D~~aA 81 (207)
T 3a8g_A 30 LDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD---PEFRQLLLTDGTAA 81 (207)
T ss_dssp HHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC---HHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCC---HHHHHHHHHCHHHH
Confidence 367899999999999885 333 2 226677777644 69999999999643
No 8
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=43.66 E-value=11 Score=37.20 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=34.5
Q ss_pred HHHcCCcCHHHHHHHHHh-ccC-C-chhHHHHhhcCcchhhhhhhhhccCch
Q 009621 204 AYEMGLVSSAQMVKFLAI-NAR-P-TTTRFISRSLPQGISRAFIGRMLADPS 252 (530)
Q Consensus 204 A~e~Glvssa~L~rFl~L-~~~-P-~~~~~l~R~lp~~lsrgfReRlLADP~ 252 (530)
.+|.|+|+++.+.++.+. +.. | +-++.+.|.+-. .+||.|||+|+.
T Consensus 38 L~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~D---P~fk~~Ll~d~~ 86 (243)
T 2zzd_C 38 AIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLD---PEYKKLCIEDGV 86 (243)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHC---HHHHHHHHHCHH
T ss_pred HHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCC---HHHHHHHHHChH
Confidence 478999999999998885 333 2 126777887544 589999999975
No 9
>3oux_B LEF-1, lymphoid enhancer-binding factor 1; WNT/beta-catenin signaling pathway, TCF, transcription phosphorylation, protein binding; 2.40A {Mus musculus} PDB: 3ouw_B
Probab=31.55 E-value=33 Score=28.02 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q 009621 142 GGDDDGDDDD 151 (530)
Q Consensus 142 Ggdddgdddd 151 (530)
|+||.|..|+
T Consensus 15 gdDDLGa~DE 24 (67)
T 3oux_B 15 GDPELCATDE 24 (67)
T ss_dssp CCTTTTCCCC
T ss_pred CccccCCccc
Confidence 3445555443
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=18.57 E-value=34 Score=32.85 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 009621 144 DDDGDDDDYFDDFDDGDEGDE 164 (530)
Q Consensus 144 dddgddddy~d~~ddgd~gd~ 164 (530)
++++++|+.++|+++++|+++
T Consensus 338 ~~~d~~~e~e~e~eeeee~ee 358 (386)
T 2ca6_A 338 DELDDMEELTDEEEEDEEEEA 358 (386)
T ss_dssp CCCCSCC--------------
T ss_pred hhccccccccccccccccccc
Done!