Query 009622
Match_columns 530
No_of_seqs 396 out of 2777
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 15:20:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 2.2E-88 4.8E-93 598.7 37.8 514 7-528 5-526 (526)
2 KOG0166 Karyopherin (importin) 100.0 2.9E-85 6.3E-90 626.1 49.6 508 9-529 5-514 (514)
3 KOG0166 Karyopherin (importin) 100.0 2.4E-43 5.2E-48 338.2 30.8 368 73-444 109-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 2.2E-43 4.7E-48 313.1 22.6 372 66-441 105-495 (526)
5 PLN03200 cellulose synthase-in 100.0 2.1E-39 4.5E-44 355.1 44.7 408 72-499 188-642 (2102)
6 PLN03200 cellulose synthase-in 100.0 8.2E-38 1.8E-42 342.6 44.6 415 73-496 404-861 (2102)
7 KOG4224 Armadillo repeat prote 100.0 1.4E-29 3E-34 227.4 23.4 363 73-445 85-449 (550)
8 KOG4224 Armadillo repeat prote 100.0 4.5E-29 9.8E-34 224.1 25.7 363 71-444 124-495 (550)
9 PF05804 KAP: Kinesin-associat 100.0 1.4E-24 3E-29 221.2 38.5 389 76-492 253-646 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.6E-23 3.6E-28 213.4 34.3 361 73-449 290-656 (708)
11 KOG0168 Putative ubiquitin fus 99.9 3.3E-20 7.2E-25 183.6 28.8 388 74-476 168-653 (1051)
12 KOG1048 Neural adherens juncti 99.8 4.1E-18 8.8E-23 169.9 26.9 366 117-498 234-687 (717)
13 PF10508 Proteasom_PSMB: Prote 99.8 1.7E-15 3.7E-20 153.7 37.8 398 76-495 41-462 (503)
14 PF10508 Proteasom_PSMB: Prote 99.8 3.3E-15 7.2E-20 151.6 37.1 402 75-495 5-420 (503)
15 KOG1048 Neural adherens juncti 99.8 2.7E-16 5.8E-21 157.1 26.5 363 74-444 234-686 (717)
16 KOG4500 Rho/Rac GTPase guanine 99.8 1.8E-16 3.8E-21 146.6 21.8 355 84-445 53-434 (604)
17 KOG2171 Karyopherin (importin) 99.8 5.7E-15 1.2E-19 152.8 34.5 361 74-446 115-508 (1075)
18 KOG2122 Beta-catenin-binding p 99.7 1.2E-15 2.6E-20 158.8 26.3 366 74-446 198-605 (2195)
19 KOG4199 Uncharacterized conser 99.7 1.5E-14 3.4E-19 129.8 28.0 317 115-440 103-442 (461)
20 KOG1222 Kinesin associated pro 99.7 2.4E-14 5.2E-19 134.3 27.1 378 86-491 276-659 (791)
21 KOG1222 Kinesin associated pro 99.7 3.8E-13 8.2E-18 126.4 31.5 361 73-449 304-670 (791)
22 KOG4500 Rho/Rac GTPase guanine 99.7 1.4E-13 3.1E-18 127.5 27.3 401 73-487 87-511 (604)
23 PRK09687 putative lyase; Provi 99.7 2.1E-14 4.5E-19 133.8 21.9 255 117-439 24-279 (280)
24 PRK09687 putative lyase; Provi 99.6 5.6E-14 1.2E-18 130.9 23.6 254 74-396 24-279 (280)
25 KOG4199 Uncharacterized conser 99.6 3.2E-13 7E-18 121.4 25.5 311 83-400 117-445 (461)
26 KOG1293 Proteins containing ar 99.6 1.6E-12 3.5E-17 127.1 29.3 405 77-496 13-534 (678)
27 KOG2122 Beta-catenin-binding p 99.6 6.2E-14 1.3E-18 146.4 20.3 269 89-360 313-604 (2195)
28 KOG2023 Nuclear transport rece 99.6 5.3E-14 1.1E-18 136.8 17.6 340 73-423 128-527 (885)
29 PF04826 Arm_2: Armadillo-like 99.6 5E-13 1.1E-17 121.6 22.6 237 241-486 10-253 (254)
30 KOG2171 Karyopherin (importin) 99.6 4.1E-12 8.8E-17 132.1 31.6 395 74-491 37-500 (1075)
31 PRK13800 putative oxidoreducta 99.6 2.1E-12 4.5E-17 140.7 30.4 275 73-438 621-895 (897)
32 PF04826 Arm_2: Armadillo-like 99.5 1E-12 2.2E-17 119.6 20.3 196 113-315 9-206 (254)
33 KOG2023 Nuclear transport rece 99.5 6.6E-12 1.4E-16 122.5 23.0 346 81-443 98-506 (885)
34 PRK13800 putative oxidoreducta 99.5 1.5E-11 3.3E-16 134.0 28.9 277 114-491 619-895 (897)
35 PTZ00429 beta-adaptin; Provisi 99.5 2.4E-10 5.2E-15 119.3 36.2 262 73-361 68-330 (746)
36 KOG1293 Proteins containing ar 99.5 1.6E-11 3.4E-16 120.3 25.2 370 71-444 49-535 (678)
37 cd00020 ARM Armadillo/beta-cat 99.5 1.3E-12 2.8E-17 106.9 14.0 119 111-231 2-120 (120)
38 cd00020 ARM Armadillo/beta-cat 99.5 1.8E-12 3.8E-17 106.1 14.2 118 281-399 3-120 (120)
39 PTZ00429 beta-adaptin; Provisi 99.4 9.5E-10 2.1E-14 114.9 36.3 294 73-399 32-326 (746)
40 PF01602 Adaptin_N: Adaptin N 99.4 1.3E-11 2.8E-16 128.5 22.7 328 73-444 42-371 (526)
41 cd00256 VATPase_H VATPase_H, r 99.4 2.4E-10 5.3E-15 110.8 28.6 322 160-495 54-425 (429)
42 PF01602 Adaptin_N: Adaptin N 99.4 1.8E-10 3.9E-15 120.0 30.0 326 77-444 8-335 (526)
43 PF01749 IBB: Importin beta bi 99.4 1.1E-13 2.4E-18 105.8 2.3 90 6-95 3-96 (97)
44 cd00256 VATPase_H VATPase_H, r 99.4 5.1E-10 1.1E-14 108.6 27.4 322 74-400 54-426 (429)
45 KOG1241 Karyopherin (importin) 99.4 1.5E-10 3.2E-15 115.1 22.2 367 73-447 125-535 (859)
46 KOG0168 Putative ubiquitin fus 99.2 3.1E-09 6.8E-14 106.9 24.4 343 74-423 212-653 (1051)
47 KOG0213 Splicing factor 3b, su 99.2 3.2E-10 7E-15 112.1 16.6 344 74-442 717-1065(1172)
48 KOG1241 Karyopherin (importin) 99.2 5E-09 1.1E-13 104.5 23.3 357 79-446 96-481 (859)
49 KOG2759 Vacuolar H+-ATPase V1 99.2 1.1E-08 2.4E-13 95.8 22.6 323 74-400 66-439 (442)
50 KOG2759 Vacuolar H+-ATPase V1 99.1 5.9E-09 1.3E-13 97.5 18.4 281 74-358 115-439 (442)
51 KOG2160 Armadillo/beta-catenin 99.1 5.1E-08 1.1E-12 90.3 22.2 190 255-446 95-286 (342)
52 KOG0946 ER-Golgi vesicle-tethe 99.1 5.1E-07 1.1E-11 90.8 30.4 323 73-401 22-401 (970)
53 KOG1059 Vesicle coat complex A 99.0 4.5E-07 9.7E-12 90.3 28.8 217 74-314 145-365 (877)
54 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.2E-08 2.5E-13 97.9 17.8 224 254-491 68-310 (312)
55 KOG2160 Armadillo/beta-catenin 99.0 1.9E-08 4.2E-13 93.0 17.0 184 130-314 96-282 (342)
56 COG5215 KAP95 Karyopherin (imp 99.0 5.7E-08 1.2E-12 94.0 20.6 360 73-446 129-533 (858)
57 KOG1517 Guanine nucleotide bin 99.0 4.8E-08 1E-12 100.6 20.0 271 87-368 450-743 (1387)
58 KOG0946 ER-Golgi vesicle-tethe 99.0 2.5E-06 5.5E-11 85.9 31.0 324 117-446 23-403 (970)
59 PF03224 V-ATPase_H_N: V-ATPas 99.0 2.7E-08 5.8E-13 95.4 16.9 218 170-390 68-305 (312)
60 COG5181 HSH155 U2 snRNP splice 99.0 3.8E-09 8.2E-14 102.7 10.8 265 160-444 605-872 (975)
61 KOG1789 Endocytosis protein RM 98.9 2.1E-06 4.6E-11 88.8 29.7 329 88-424 1740-2141(2235)
62 KOG1062 Vesicle coat complex A 98.9 7.5E-07 1.6E-11 90.0 25.5 296 76-401 110-453 (866)
63 KOG1061 Vesicle coat complex A 98.8 1.8E-06 3.8E-11 87.4 25.1 342 73-447 49-420 (734)
64 COG5215 KAP95 Karyopherin (imp 98.8 2.9E-06 6.3E-11 82.5 24.7 351 78-447 99-484 (858)
65 KOG1062 Vesicle coat complex A 98.8 8E-06 1.7E-10 82.8 27.1 352 19-404 20-419 (866)
66 KOG1242 Protein containing ada 98.8 2.6E-05 5.6E-10 77.4 29.5 314 117-446 97-448 (569)
67 KOG0212 Uncharacterized conser 98.7 1.4E-06 2.9E-11 84.7 19.5 321 114-446 82-410 (675)
68 KOG3678 SARM protein (with ste 98.7 1.6E-06 3.5E-11 82.2 19.2 271 110-397 174-450 (832)
69 KOG1824 TATA-binding protein-i 98.7 1.4E-05 3E-10 82.3 26.9 410 74-494 48-598 (1233)
70 KOG1824 TATA-binding protein-i 98.7 6.6E-06 1.4E-10 84.6 23.9 355 77-446 9-406 (1233)
71 KOG3678 SARM protein (with ste 98.7 1.1E-06 2.4E-11 83.3 16.7 266 73-355 180-450 (832)
72 KOG0211 Protein phosphatase 2A 98.7 1.1E-05 2.4E-10 84.0 25.3 380 77-491 241-660 (759)
73 KOG0213 Splicing factor 3b, su 98.6 1.5E-05 3.3E-10 79.9 23.8 332 118-495 801-1142(1172)
74 KOG1061 Vesicle coat complex A 98.6 4.1E-06 8.9E-11 84.8 19.7 301 73-399 86-415 (734)
75 KOG1059 Vesicle coat complex A 98.6 7.5E-05 1.6E-09 75.0 27.3 255 117-401 145-403 (877)
76 KOG1517 Guanine nucleotide bin 98.6 3E-06 6.6E-11 87.8 18.0 252 73-328 472-746 (1387)
77 COG5181 HSH155 U2 snRNP splice 98.6 1.7E-06 3.7E-11 84.8 15.1 338 74-444 605-948 (975)
78 KOG4413 26S proteasome regulat 98.6 0.00057 1.2E-08 62.5 31.4 341 75-420 84-459 (524)
79 COG5369 Uncharacterized conser 98.5 9.5E-07 2.1E-11 85.2 12.4 306 178-493 408-739 (743)
80 KOG1060 Vesicle coat complex A 98.5 0.00021 4.5E-09 72.6 28.7 366 75-495 37-458 (968)
81 KOG1789 Endocytosis protein RM 98.5 6.2E-05 1.3E-09 78.4 25.3 305 70-382 1768-2142(2235)
82 KOG1242 Protein containing ada 98.5 0.00013 2.8E-09 72.6 26.7 328 74-423 97-463 (569)
83 KOG0212 Uncharacterized conser 98.5 6.4E-06 1.4E-10 80.2 17.0 317 73-401 84-408 (675)
84 KOG2973 Uncharacterized conser 98.5 9E-05 1.9E-09 67.2 23.0 270 204-495 6-315 (353)
85 TIGR02270 conserved hypothetic 98.5 5.8E-05 1.3E-09 74.2 23.4 242 74-400 55-297 (410)
86 KOG1060 Vesicle coat complex A 98.5 0.00012 2.7E-09 74.2 25.4 283 122-446 149-462 (968)
87 PF05536 Neurochondrin: Neuroc 98.5 0.00042 9.2E-09 71.1 30.2 381 74-474 6-459 (543)
88 TIGR02270 conserved hypothetic 98.4 0.00011 2.3E-09 72.4 23.6 243 117-443 55-297 (410)
89 COG5369 Uncharacterized conser 98.4 1.7E-06 3.6E-11 83.6 10.3 281 112-397 427-739 (743)
90 KOG2973 Uncharacterized conser 98.4 5.2E-05 1.1E-09 68.7 19.1 268 118-399 5-314 (353)
91 PF14664 RICTOR_N: Rapamycin-i 98.4 3E-05 6.6E-10 75.3 18.5 315 76-399 28-364 (371)
92 KOG4646 Uncharacterized conser 98.4 1E-05 2.2E-10 63.7 11.6 153 328-494 17-169 (173)
93 COG1413 FOG: HEAT repeat [Ener 98.3 0.00033 7.1E-09 68.4 25.1 250 73-400 43-305 (335)
94 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00025 5.4E-09 69.0 23.2 318 161-494 27-363 (371)
95 KOG4413 26S proteasome regulat 98.3 0.0024 5.1E-08 58.6 26.5 277 159-441 82-376 (524)
96 KOG1077 Vesicle coat complex A 98.3 0.0009 1.9E-08 67.3 25.8 297 74-399 112-433 (938)
97 KOG1077 Vesicle coat complex A 98.3 0.0027 5.9E-08 64.0 28.9 325 76-433 77-424 (938)
98 PF00514 Arm: Armadillo/beta-c 98.2 4.1E-06 8.9E-11 53.1 5.3 41 359-399 1-41 (41)
99 PF00514 Arm: Armadillo/beta-c 98.2 3.5E-06 7.6E-11 53.4 5.0 41 148-188 1-41 (41)
100 PF12460 MMS19_C: RNAPII trans 98.2 0.0045 9.8E-08 62.1 29.7 347 76-446 2-398 (415)
101 KOG4646 Uncharacterized conser 98.2 1.8E-05 3.9E-10 62.4 9.6 115 116-233 16-130 (173)
102 KOG2259 Uncharacterized conser 98.2 7.1E-05 1.5E-09 74.5 15.9 245 164-431 203-464 (823)
103 KOG1058 Vesicle coat complex C 98.2 0.00089 1.9E-08 67.9 23.6 326 125-498 108-466 (948)
104 KOG0915 Uncharacterized conser 98.2 0.0012 2.6E-08 72.0 25.9 317 116-444 998-1346(1702)
105 COG1413 FOG: HEAT repeat [Ener 98.2 0.00057 1.2E-08 66.7 22.2 215 116-395 43-269 (335)
106 KOG2259 Uncharacterized conser 98.1 0.00013 2.9E-09 72.5 16.9 220 206-444 203-441 (823)
107 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.00025 5.5E-09 64.5 17.0 239 246-496 152-429 (432)
108 PF10165 Ric8: Guanine nucleot 98.1 0.0007 1.5E-08 68.0 22.0 265 94-361 2-341 (446)
109 KOG2062 26S proteasome regulat 98.1 0.00016 3.5E-09 72.9 17.0 264 117-428 414-680 (929)
110 KOG0915 Uncharacterized conser 98.1 0.00029 6.3E-09 76.6 19.3 336 76-431 821-1190(1702)
111 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.00016 3.4E-09 65.8 14.8 229 124-356 157-427 (432)
112 KOG1240 Protein kinase contain 98.0 0.00014 3E-09 77.2 15.9 268 75-357 424-725 (1431)
113 PF13513 HEAT_EZ: HEAT-like re 98.0 1E-05 2.2E-10 55.2 5.3 55 342-397 1-55 (55)
114 KOG1991 Nuclear transport rece 98.0 0.0067 1.5E-07 63.8 27.5 339 93-443 392-758 (1010)
115 PF05536 Neurochondrin: Neuroc 98.0 0.00071 1.5E-08 69.5 20.7 236 161-399 7-261 (543)
116 KOG1240 Protein kinase contain 98.0 0.00036 7.8E-09 74.2 18.3 296 161-495 424-725 (1431)
117 PF12348 CLASP_N: CLASP N term 98.0 6.8E-05 1.5E-09 68.7 11.3 187 294-495 16-206 (228)
118 PF12348 CLASP_N: CLASP N term 98.0 8.4E-05 1.8E-09 68.1 11.8 186 83-276 17-210 (228)
119 KOG0567 HEAT repeat-containing 97.9 0.0014 3.1E-08 58.4 17.6 244 85-399 17-280 (289)
120 KOG4535 HEAT and armadillo rep 97.9 0.00037 8E-09 67.0 14.4 176 258-438 406-599 (728)
121 KOG0211 Protein phosphatase 2A 97.9 0.024 5.1E-07 59.9 28.8 387 74-496 198-626 (759)
122 COG5096 Vesicle coat complex, 97.9 0.015 3.3E-07 60.8 27.0 141 74-232 56-196 (757)
123 PF12755 Vac14_Fab1_bd: Vacuol 97.9 0.0001 2.3E-09 56.4 8.7 95 344-442 2-96 (97)
124 PF13646 HEAT_2: HEAT repeats; 97.9 5.6E-05 1.2E-09 57.5 7.3 86 287-395 1-88 (88)
125 PF13646 HEAT_2: HEAT repeats; 97.9 4.6E-05 1E-09 57.9 6.9 87 118-227 1-88 (88)
126 COG5240 SEC21 Vesicle coat com 97.9 0.0062 1.3E-07 60.2 22.3 308 137-494 247-554 (898)
127 COG5240 SEC21 Vesicle coat com 97.8 0.0035 7.5E-08 61.9 20.0 289 117-441 265-554 (898)
128 KOG1943 Beta-tubulin folding c 97.8 0.027 5.9E-07 60.0 27.1 261 116-400 341-612 (1133)
129 KOG2734 Uncharacterized conser 97.8 0.0069 1.5E-07 58.0 20.2 224 71-295 123-371 (536)
130 KOG2734 Uncharacterized conser 97.7 0.0035 7.5E-08 59.9 17.9 224 239-474 121-369 (536)
131 PF13513 HEAT_EZ: HEAT-like re 97.7 4E-05 8.7E-10 52.3 3.9 55 299-355 1-55 (55)
132 KOG0567 HEAT repeat-containing 97.7 0.0047 1E-07 55.2 17.3 257 118-441 5-279 (289)
133 KOG2274 Predicted importin 9 [ 97.7 0.0072 1.6E-07 62.9 20.6 237 124-368 457-700 (1005)
134 COG5096 Vesicle coat complex, 97.6 0.14 2.9E-06 54.0 29.2 169 82-273 28-196 (757)
135 KOG1943 Beta-tubulin folding c 97.6 0.014 3.1E-07 62.1 21.1 257 159-440 341-609 (1133)
136 PF12460 MMS19_C: RNAPII trans 97.6 0.069 1.5E-06 53.6 25.8 299 86-401 56-396 (415)
137 KOG2274 Predicted importin 9 [ 97.5 0.018 4E-07 60.0 20.8 312 84-409 461-790 (1005)
138 KOG1078 Vesicle coat complex C 97.5 0.0095 2.1E-07 61.1 18.0 261 117-399 246-532 (865)
139 KOG4535 HEAT and armadillo rep 97.5 0.0015 3.3E-08 62.9 11.5 321 74-400 254-604 (728)
140 PRK14707 hypothetical protein; 97.5 0.22 4.8E-06 57.2 29.2 353 118-487 165-521 (2710)
141 PF09759 Atx10homo_assoc: Spin 97.4 0.0008 1.7E-08 51.5 7.8 68 133-200 2-71 (102)
142 KOG0414 Chromosome condensatio 97.4 0.056 1.2E-06 58.3 23.7 143 286-444 920-1066(1251)
143 PF10165 Ric8: Guanine nucleot 97.4 0.03 6.6E-07 56.4 21.1 230 83-314 42-337 (446)
144 smart00185 ARM Armadillo/beta- 97.4 0.00052 1.1E-08 43.3 5.3 39 149-187 2-40 (41)
145 COG5116 RPN2 26S proteasome re 97.4 0.0054 1.2E-07 60.5 14.1 154 247-427 520-676 (926)
146 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.0017 3.6E-08 49.8 8.7 93 302-398 3-95 (97)
147 KOG4151 Myosin assembly protei 97.4 0.0093 2E-07 61.5 16.3 222 192-420 495-719 (748)
148 KOG1248 Uncharacterized conser 97.3 0.09 2E-06 56.9 24.0 232 205-444 657-900 (1176)
149 smart00185 ARM Armadillo/beta- 97.3 0.0006 1.3E-08 43.0 5.2 39 361-399 3-41 (41)
150 PF12717 Cnd1: non-SMC mitotic 97.3 0.01 2.2E-07 51.7 14.6 92 131-233 2-94 (178)
151 KOG1991 Nuclear transport rece 97.3 0.093 2E-06 55.7 23.3 347 87-445 432-803 (1010)
152 KOG1967 DNA repair/transcripti 97.3 0.0024 5.2E-08 66.4 11.8 190 161-355 817-1022(1030)
153 PF05918 API5: Apoptosis inhib 97.3 0.047 1E-06 55.4 20.6 295 120-446 27-349 (556)
154 KOG1248 Uncharacterized conser 97.3 0.045 9.7E-07 59.1 21.0 243 121-368 658-910 (1176)
155 PRK14707 hypothetical protein; 97.3 0.46 1E-05 54.8 29.1 401 74-494 164-570 (2710)
156 KOG1058 Vesicle coat complex C 97.3 0.018 3.8E-07 58.9 16.9 333 76-442 23-388 (948)
157 PF08569 Mo25: Mo25-like; Int 97.3 0.043 9.3E-07 52.6 18.9 203 279-494 70-282 (335)
158 PF11841 DUF3361: Domain of un 97.2 0.018 3.9E-07 48.0 14.0 130 279-409 5-141 (160)
159 PF12717 Cnd1: non-SMC mitotic 97.2 0.017 3.6E-07 50.4 14.8 93 256-358 1-93 (178)
160 PF08569 Mo25: Mo25-like; Int 97.1 0.022 4.7E-07 54.6 15.5 202 154-357 71-283 (335)
161 KOG2062 26S proteasome regulat 97.1 0.095 2.1E-06 53.8 20.0 167 288-490 522-689 (929)
162 PF05004 IFRD: Interferon-rela 97.1 0.027 5.9E-07 53.6 15.8 192 74-271 44-256 (309)
163 PF11698 V-ATPase_H_C: V-ATPas 97.1 0.0017 3.6E-08 51.1 6.1 70 414-494 44-114 (119)
164 PF09759 Atx10homo_assoc: Spin 97.0 0.005 1.1E-07 47.2 8.1 67 301-367 2-69 (102)
165 KOG1078 Vesicle coat complex C 97.0 0.34 7.3E-06 50.3 22.8 368 74-498 65-442 (865)
166 KOG0414 Chromosome condensatio 96.9 0.051 1.1E-06 58.6 17.4 147 240-402 916-1067(1251)
167 KOG1020 Sister chromatid cohes 96.9 1.2 2.5E-05 50.1 33.0 146 74-233 817-962 (1692)
168 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0034 7.3E-08 49.4 5.9 73 327-399 43-115 (119)
169 KOG1967 DNA repair/transcripti 96.8 0.013 2.7E-07 61.4 11.5 193 202-398 816-1023(1030)
170 KOG4151 Myosin assembly protei 96.8 0.064 1.4E-06 55.6 16.2 243 146-395 491-737 (748)
171 PF04078 Rcd1: Cell differenti 96.8 0.17 3.8E-06 45.8 17.0 187 256-445 8-221 (262)
172 KOG3036 Protein involved in ce 96.7 0.11 2.4E-06 46.2 14.9 144 88-233 94-249 (293)
173 PF05918 API5: Apoptosis inhib 96.7 0.1 2.2E-06 53.0 16.7 157 163-338 27-189 (556)
174 PF11864 DUF3384: Domain of un 96.7 0.89 1.9E-05 46.4 29.9 287 87-399 4-330 (464)
175 PF11841 DUF3361: Domain of un 96.7 0.074 1.6E-06 44.4 12.9 127 193-319 3-136 (160)
176 COG5656 SXM1 Importin, protein 96.6 0.31 6.7E-06 50.3 19.3 279 115-402 407-714 (970)
177 PF05004 IFRD: Interferon-rela 96.6 0.095 2.1E-06 50.0 15.3 191 205-400 47-258 (309)
178 KOG2032 Uncharacterized conser 96.5 0.13 2.8E-06 50.5 15.4 149 335-495 266-416 (533)
179 KOG1243 Protein kinase [Genera 96.5 0.19 4.1E-06 51.6 17.3 193 240-447 327-520 (690)
180 KOG4653 Uncharacterized conser 96.5 0.093 2E-06 54.8 15.2 223 164-397 732-962 (982)
181 COG5656 SXM1 Importin, protein 96.5 1.4 2.9E-05 45.9 24.8 299 136-447 389-716 (970)
182 PF12719 Cnd3: Nuclear condens 96.5 0.35 7.5E-06 46.2 18.4 171 116-297 26-209 (298)
183 KOG4653 Uncharacterized conser 96.5 0.18 4E-06 52.7 16.9 220 212-442 737-964 (982)
184 PF12719 Cnd3: Nuclear condens 96.5 0.35 7.6E-06 46.1 18.3 172 242-425 25-209 (298)
185 PF06025 DUF913: Domain of Unk 96.4 0.86 1.9E-05 44.8 21.1 222 136-368 3-243 (379)
186 KOG3036 Protein involved in ce 96.4 0.53 1.2E-05 42.0 16.9 146 259-409 95-255 (293)
187 KOG2032 Uncharacterized conser 96.3 0.28 6E-06 48.2 16.5 267 159-442 254-531 (533)
188 KOG1020 Sister chromatid cohes 96.2 2.9 6.2E-05 47.2 29.2 258 216-495 1094-1405(1692)
189 KOG2956 CLIP-associating prote 96.2 0.22 4.9E-06 48.5 15.2 175 173-357 301-477 (516)
190 PF04078 Rcd1: Cell differenti 96.2 0.18 3.9E-06 45.7 13.7 139 260-401 67-220 (262)
191 KOG3665 ZYG-1-like serine/thre 96.2 0.51 1.1E-05 50.3 19.4 197 182-396 494-694 (699)
192 PF13764 E3_UbLigase_R4: E3 ub 96.2 1.4 3E-05 47.4 22.1 239 242-495 116-406 (802)
193 PF13764 E3_UbLigase_R4: E3 ub 96.1 1.9 4.1E-05 46.5 23.0 206 157-380 115-360 (802)
194 KOG2956 CLIP-associating prote 96.1 0.39 8.4E-06 46.9 15.8 175 215-400 300-478 (516)
195 COG5098 Chromosome condensatio 96.0 0.6 1.3E-05 47.9 17.5 176 80-276 860-1041(1128)
196 PF11701 UNC45-central: Myosin 96.0 0.087 1.9E-06 44.7 10.3 144 288-439 6-156 (157)
197 PF02985 HEAT: HEAT repeat; I 95.9 0.014 2.9E-07 34.1 3.5 30 371-400 1-30 (31)
198 PF08045 CDC14: Cell division 95.8 0.32 7E-06 44.4 13.6 104 386-501 107-213 (257)
199 PF11865 DUF3385: Domain of un 95.8 0.071 1.5E-06 45.3 8.7 147 116-271 10-156 (160)
200 PF14668 RICTOR_V: Rapamycin-i 95.7 0.099 2.1E-06 37.4 8.0 66 345-413 4-70 (73)
201 KOG3665 ZYG-1-like serine/thre 95.7 1.8 3.8E-05 46.4 20.5 174 308-493 494-695 (699)
202 PF07814 WAPL: Wings apart-lik 95.7 0.68 1.5E-05 45.4 16.4 275 161-445 23-358 (361)
203 KOG2025 Chromosome condensatio 95.7 1.1 2.5E-05 46.1 17.8 110 239-354 81-190 (892)
204 KOG1243 Protein kinase [Genera 95.7 0.41 8.8E-06 49.3 14.9 258 75-357 256-515 (690)
205 KOG1820 Microtubule-associated 95.6 0.36 7.9E-06 51.7 15.2 188 161-357 255-443 (815)
206 COG5098 Chromosome condensatio 95.6 0.071 1.5E-06 54.2 9.3 144 286-445 893-1040(1128)
207 PF11701 UNC45-central: Myosin 95.6 0.25 5.4E-06 41.9 11.5 137 254-397 16-157 (157)
208 PF06371 Drf_GBD: Diaphanous G 95.6 0.13 2.7E-06 45.4 10.1 111 74-187 67-186 (187)
209 PF02985 HEAT: HEAT repeat; I 95.6 0.02 4.3E-07 33.4 3.3 29 328-357 1-29 (31)
210 PF08506 Cse1: Cse1; InterPro 95.5 0.33 7.1E-06 47.5 13.6 141 244-394 211-370 (370)
211 COG5116 RPN2 26S proteasome re 95.5 0.13 2.9E-06 51.1 10.4 151 123-297 523-674 (926)
212 KOG1525 Sister chromatid cohes 95.5 3.7 8.1E-05 46.5 22.6 148 285-443 259-406 (1266)
213 PF08045 CDC14: Cell division 95.3 0.33 7.2E-06 44.3 11.9 101 89-190 107-209 (257)
214 KOG1993 Nuclear transport rece 95.3 4.7 0.0001 42.4 22.0 281 119-410 529-822 (978)
215 PF01603 B56: Protein phosphat 95.2 1.6 3.4E-05 43.7 17.6 260 93-366 110-379 (409)
216 PF12231 Rif1_N: Rap1-interact 95.2 3.5 7.5E-05 40.7 21.1 267 172-443 59-353 (372)
217 KOG1566 Conserved protein Mo25 95.1 1.9 4.1E-05 40.1 15.8 204 153-357 73-286 (342)
218 PF07814 WAPL: Wings apart-lik 95.1 1.3 2.8E-05 43.5 16.2 275 118-401 23-357 (361)
219 PLN03076 ARF guanine nucleotid 95.0 11 0.00023 44.9 26.1 264 84-357 1148-1489(1780)
220 KOG1820 Microtubule-associated 94.8 1.1 2.3E-05 48.3 15.7 186 76-272 256-443 (815)
221 PF12530 DUF3730: Protein of u 94.7 3.4 7.3E-05 37.8 18.3 202 118-339 2-215 (234)
222 PF06025 DUF913: Domain of Unk 94.6 2.9 6.2E-05 41.2 17.2 145 302-448 77-238 (379)
223 KOG2611 Neurochondrin/leucine- 94.6 5.1 0.00011 39.6 18.0 193 74-270 12-223 (698)
224 KOG2933 Uncharacterized conser 94.6 0.21 4.5E-06 46.1 8.4 144 287-441 90-233 (334)
225 KOG2137 Protein kinase [Signal 94.5 1.2 2.6E-05 46.2 14.5 138 238-384 384-522 (700)
226 PF12830 Nipped-B_C: Sister ch 94.5 0.9 2E-05 39.9 12.3 147 74-233 9-169 (187)
227 PLN03076 ARF guanine nucleotid 94.3 4.2 9.1E-05 48.0 20.0 270 171-444 1149-1491(1780)
228 PF11707 Npa1: Ribosome 60S bi 94.2 5.7 0.00012 38.4 19.2 157 287-443 58-238 (330)
229 KOG1566 Conserved protein Mo25 94.2 4.9 0.00011 37.5 18.4 209 278-498 72-289 (342)
230 PF01603 B56: Protein phosphat 94.2 4.5 9.8E-05 40.4 17.8 233 155-400 129-371 (409)
231 KOG2025 Chromosome condensatio 94.1 3.9 8.5E-05 42.4 16.9 102 74-183 86-188 (892)
232 PF12530 DUF3730: Protein of u 94.1 4.5 9.8E-05 36.9 16.7 202 161-384 2-217 (234)
233 COG5218 YCG1 Chromosome conden 94.1 7.7 0.00017 39.5 20.0 109 238-352 86-194 (885)
234 PF11707 Npa1: Ribosome 60S bi 94.0 6.3 0.00014 38.2 21.8 159 329-495 58-237 (330)
235 KOG2137 Protein kinase [Signal 93.9 4.8 0.0001 41.9 17.4 174 240-425 346-520 (700)
236 PF01347 Vitellogenin_N: Lipop 93.4 0.57 1.2E-05 50.0 10.6 136 243-397 431-587 (618)
237 PF14668 RICTOR_V: Rapamycin-i 93.3 0.55 1.2E-05 33.6 6.9 67 90-159 4-70 (73)
238 KOG2933 Uncharacterized conser 93.3 1.2 2.5E-05 41.4 10.6 147 242-401 87-236 (334)
239 KOG1949 Uncharacterized conser 93.2 2.7 5.9E-05 43.5 14.0 231 198-440 126-368 (1005)
240 PF14500 MMS19_N: Dos2-interac 93.1 6.8 0.00015 36.4 15.8 218 121-357 4-237 (262)
241 PF04063 DUF383: Domain of unk 93.0 1.3 2.8E-05 38.9 10.2 124 256-381 8-158 (192)
242 KOG2005 26S proteasome regulat 92.9 7.6 0.00016 40.1 16.4 290 74-405 416-710 (878)
243 COG5218 YCG1 Chromosome conden 92.9 1.5 3.2E-05 44.3 11.4 99 285-392 91-192 (885)
244 PF10363 DUF2435: Protein of u 92.8 0.44 9.6E-06 36.1 6.3 73 74-150 4-76 (92)
245 KOG2611 Neurochondrin/leucine- 92.7 11 0.00024 37.4 16.8 192 163-358 15-226 (698)
246 KOG2999 Regulator of Rac1, req 92.5 1.8 3.9E-05 43.4 11.4 158 74-235 84-246 (713)
247 PF04063 DUF383: Domain of unk 92.5 1.8 3.9E-05 38.0 10.5 114 294-411 4-142 (192)
248 PF08167 RIX1: rRNA processing 92.5 1.1 2.5E-05 38.3 9.2 112 285-400 25-144 (165)
249 KOG1848 Uncharacterized conser 92.4 5.5 0.00012 44.7 15.7 114 374-493 1001-1130(1610)
250 cd03568 VHS_STAM VHS domain fa 92.4 0.46 1E-05 39.5 6.4 75 414-498 38-113 (144)
251 PF13251 DUF4042: Domain of un 92.2 3.8 8.3E-05 35.5 12.0 144 301-445 2-177 (182)
252 PF13251 DUF4042: Domain of un 92.1 2.4 5.1E-05 36.8 10.6 141 133-273 2-175 (182)
253 KOG2999 Regulator of Rac1, req 92.1 11 0.00024 38.1 16.1 165 245-411 85-254 (713)
254 PF11864 DUF3384: Domain of un 91.9 16 0.00035 37.3 28.4 259 79-356 34-329 (464)
255 PF08506 Cse1: Cse1; InterPro 91.9 14 0.0003 36.4 19.7 132 342-490 225-370 (370)
256 PF01347 Vitellogenin_N: Lipop 91.9 13 0.00028 39.8 18.4 196 117-347 396-612 (618)
257 PF06371 Drf_GBD: Diaphanous G 91.8 1.4 3E-05 38.6 9.3 109 118-230 68-186 (187)
258 smart00638 LPD_N Lipoprotein N 91.8 18 0.00039 38.2 19.1 135 202-355 394-543 (574)
259 PF14225 MOR2-PAG1_C: Cell mor 91.5 8.2 0.00018 35.8 14.1 213 79-313 13-253 (262)
260 PF11865 DUF3385: Domain of un 91.4 2.4 5.1E-05 36.1 9.8 38 327-364 10-47 (160)
261 PF03378 CAS_CSE1: CAS/CSE pro 91.3 16 0.00035 36.8 17.1 261 131-400 44-325 (435)
262 PF10363 DUF2435: Protein of u 91.3 1.1 2.3E-05 34.0 6.8 77 329-408 5-81 (92)
263 COG5209 RCD1 Uncharacterized p 91.3 1.3 2.8E-05 39.0 8.0 141 90-232 117-269 (315)
264 PF14500 MMS19_N: Dos2-interac 91.3 12 0.00027 34.7 19.2 221 163-400 3-238 (262)
265 PF12231 Rif1_N: Rap1-interact 91.0 17 0.00038 35.8 20.4 306 84-399 4-352 (372)
266 cd03567 VHS_GGA VHS domain fam 90.9 1.5 3.3E-05 36.1 7.9 74 371-444 39-118 (139)
267 KOG1949 Uncharacterized conser 90.7 23 0.00049 37.1 17.1 185 118-313 176-369 (1005)
268 smart00638 LPD_N Lipoprotein N 90.1 6.5 0.00014 41.5 14.0 136 242-397 392-543 (574)
269 KOG1822 Uncharacterized conser 90.0 31 0.00067 40.5 19.0 230 118-356 878-1126(2067)
270 PF06685 DUF1186: Protein of u 89.9 11 0.00023 34.6 13.1 130 283-418 71-202 (249)
271 PF08167 RIX1: rRNA processing 89.8 4.4 9.5E-05 34.7 10.2 115 327-446 25-147 (165)
272 KOG1822 Uncharacterized conser 89.5 51 0.0011 38.9 23.6 273 161-441 878-1188(2067)
273 PF08324 PUL: PUL domain; Int 89.2 7.5 0.00016 36.4 12.3 144 134-279 80-238 (268)
274 PF04388 Hamartin: Hamartin pr 89.0 8 0.00017 41.3 13.4 157 74-252 5-161 (668)
275 cd03569 VHS_Hrs_Vps27p VHS dom 88.9 1.4 2.9E-05 36.7 6.1 74 73-146 41-114 (142)
276 PF12726 SEN1_N: SEN1 N termin 88.7 41 0.00089 36.7 25.8 114 371-497 442-555 (727)
277 cd03568 VHS_STAM VHS domain fa 88.2 2.5 5.3E-05 35.2 7.2 72 371-442 38-110 (144)
278 KOG1992 Nuclear export recepto 87.9 42 0.00091 36.0 18.2 153 116-272 361-527 (960)
279 PF08324 PUL: PUL domain; Int 87.8 2.2 4.7E-05 40.0 7.7 189 288-489 66-268 (268)
280 smart00288 VHS Domain present 86.6 2.2 4.8E-05 35.0 6.1 74 73-146 37-111 (133)
281 KOG1993 Nuclear transport rece 86.1 52 0.0011 35.2 22.4 314 74-403 527-868 (978)
282 COG5209 RCD1 Uncharacterized p 86.1 4.5 9.7E-05 35.7 7.8 138 302-442 117-268 (315)
283 PF12074 DUF3554: Domain of un 86.0 11 0.00024 36.6 11.8 216 115-339 21-256 (339)
284 cd03561 VHS VHS domain family; 85.9 9.9 0.00022 31.1 9.6 75 371-445 38-115 (133)
285 PF03378 CAS_CSE1: CAS/CSE pro 85.8 28 0.0006 35.2 14.5 262 171-444 42-326 (435)
286 cd03569 VHS_Hrs_Vps27p VHS dom 85.7 4 8.6E-05 33.9 7.2 74 371-444 42-116 (142)
287 cd03561 VHS VHS domain family; 85.4 3.9 8.5E-05 33.5 7.0 74 73-146 37-112 (133)
288 cd03572 ENTH_epsin_related ENT 85.0 15 0.00033 29.4 9.8 74 414-497 39-121 (122)
289 KOG0891 DNA-dependent protein 85.0 9 0.0002 46.4 11.9 263 84-359 492-765 (2341)
290 KOG0413 Uncharacterized conser 84.8 67 0.0014 35.3 23.3 104 328-443 969-1074(1529)
291 PF06685 DUF1186: Protein of u 84.4 33 0.00072 31.5 14.5 89 158-258 72-169 (249)
292 PF12031 DUF3518: Domain of un 84.2 5 0.00011 36.0 7.4 84 300-384 139-230 (257)
293 cd03567 VHS_GGA VHS domain fam 84.1 6.8 0.00015 32.3 7.8 73 414-496 39-117 (139)
294 PF10521 DUF2454: Protein of u 83.9 14 0.0003 34.9 11.0 116 327-443 119-254 (282)
295 PF04821 TIMELESS: Timeless pr 83.8 11 0.00024 35.2 10.0 74 426-499 133-212 (266)
296 PF14726 RTTN_N: Rotatin, an a 83.6 13 0.00028 28.5 8.5 93 88-183 2-95 (98)
297 PF12031 DUF3518: Domain of un 83.5 3.3 7.3E-05 37.1 6.0 82 88-171 139-228 (257)
298 cd03572 ENTH_epsin_related ENT 83.2 22 0.00048 28.5 10.5 87 351-442 24-119 (122)
299 KOG4464 Signaling protein RIC- 83.1 49 0.0011 32.4 18.5 157 75-233 47-233 (532)
300 KOG1525 Sister chromatid cohes 83.0 84 0.0018 36.2 17.7 150 240-399 256-405 (1266)
301 PF14726 RTTN_N: Rotatin, an a 82.6 12 0.00027 28.6 8.0 69 412-492 29-97 (98)
302 KOG0413 Uncharacterized conser 82.6 82 0.0018 34.6 17.9 129 172-313 944-1072(1529)
303 PF12830 Nipped-B_C: Sister ch 81.6 35 0.00075 29.9 11.8 71 117-193 9-79 (187)
304 KOG0392 SNF2 family DNA-depend 81.6 19 0.00042 40.3 11.8 236 74-317 78-328 (1549)
305 PF13001 Ecm29: Proteasome sta 81.4 70 0.0015 33.1 22.9 147 341-498 334-491 (501)
306 KOG1832 HIV-1 Vpr-binding prot 81.1 32 0.00069 37.1 12.7 90 298-401 675-775 (1516)
307 PF13001 Ecm29: Proteasome sta 81.1 31 0.00066 35.7 13.0 174 213-400 248-444 (501)
308 PF10521 DUF2454: Protein of u 81.1 15 0.00033 34.6 10.0 74 371-444 120-205 (282)
309 KOG2213 Apoptosis inhibitor 5/ 80.8 58 0.0013 31.7 19.8 255 164-442 30-314 (460)
310 PF10274 ParcG: Parkin co-regu 80.3 38 0.00081 29.4 11.1 84 239-323 34-118 (183)
311 smart00509 TFS2N Domain in the 80.3 7.4 0.00016 28.1 5.9 52 431-494 19-70 (75)
312 smart00288 VHS Domain present 79.9 23 0.00051 29.0 9.5 73 371-443 38-112 (133)
313 PF14225 MOR2-PAG1_C: Cell mor 79.8 52 0.0011 30.6 17.3 180 159-357 64-254 (262)
314 KOG2229 Protein required for a 79.7 14 0.00031 37.0 9.2 144 327-491 16-162 (616)
315 KOG2549 Transcription initiati 79.6 28 0.0006 35.4 11.3 143 74-229 208-368 (576)
316 KOG0891 DNA-dependent protein 79.4 51 0.0011 40.5 15.2 251 176-442 461-719 (2341)
317 PF12463 DUF3689: Protein of u 79.2 28 0.0006 33.0 10.8 126 322-447 4-178 (303)
318 KOG1848 Uncharacterized conser 79.0 96 0.0021 35.6 15.9 97 170-271 853-957 (1610)
319 PF00790 VHS: VHS domain; Int 78.8 12 0.00026 31.0 7.6 72 414-495 43-118 (140)
320 KOG1992 Nuclear export recepto 77.8 1.1E+02 0.0023 33.1 26.1 317 76-401 40-437 (960)
321 cd08050 TAF6 TATA Binding Prot 77.4 14 0.00031 35.9 8.8 103 74-188 179-297 (343)
322 KOG2005 26S proteasome regulat 76.3 1.1E+02 0.0023 32.3 15.5 73 116-191 48-128 (878)
323 PF04499 SAPS: SIT4 phosphatas 75.9 27 0.00057 35.7 10.5 84 361-444 53-150 (475)
324 PF04869 Uso1_p115_head: Uso1 74.9 81 0.0017 30.2 14.8 167 118-314 36-231 (312)
325 PF12726 SEN1_N: SEN1 N termin 74.6 53 0.0012 35.9 13.2 145 74-233 442-587 (727)
326 PF10274 ParcG: Parkin co-regu 74.5 57 0.0012 28.3 11.4 75 285-361 38-113 (183)
327 cd00183 TFIIS_I N-terminal dom 74.4 14 0.0003 26.8 6.0 36 459-494 37-72 (76)
328 PF08711 Med26: TFIIS helical 74.4 7.5 0.00016 25.8 4.3 35 459-493 13-48 (53)
329 PF00790 VHS: VHS domain; Int 73.9 19 0.0004 29.8 7.5 74 371-444 43-120 (140)
330 cd00197 VHS_ENTH_ANTH VHS, ENT 73.8 17 0.00037 28.8 7.0 71 414-494 38-114 (115)
331 PF11538 Snurportin1: Snurport 73.3 3.7 8E-05 25.3 2.2 38 11-49 2-39 (40)
332 KOG4464 Signaling protein RIC- 72.8 69 0.0015 31.4 11.5 154 205-358 49-232 (532)
333 KOG1788 Uncharacterized conser 72.5 1.7E+02 0.0037 32.8 19.2 77 363-440 901-980 (2799)
334 KOG2213 Apoptosis inhibitor 5/ 71.7 1E+02 0.0023 30.1 18.8 250 72-337 24-289 (460)
335 PF04388 Hamartin: Hamartin pr 71.4 73 0.0016 34.2 12.9 71 286-358 71-141 (668)
336 PF11791 Aconitase_B_N: Aconit 70.9 26 0.00057 29.0 7.3 102 243-357 22-123 (154)
337 PF08767 CRM1_C: CRM1 C termin 70.5 95 0.0021 29.9 12.5 184 259-445 43-247 (319)
338 COG5110 RPN1 26S proteasome re 69.6 1.4E+02 0.003 30.7 17.4 89 302-403 621-709 (881)
339 PRK09169 hypothetical protein; 67.8 3E+02 0.0066 33.9 29.0 15 256-270 329-343 (2316)
340 cd08050 TAF6 TATA Binding Prot 67.0 62 0.0013 31.6 10.5 112 242-355 209-338 (343)
341 PF04821 TIMELESS: Timeless pr 66.8 1.1E+02 0.0024 28.5 14.0 63 70-146 10-72 (266)
342 PF12054 DUF3535: Domain of un 66.7 1.1E+02 0.0024 31.0 12.5 303 173-489 101-437 (441)
343 cd00197 VHS_ENTH_ANTH VHS, ENT 66.3 35 0.00075 27.0 7.3 70 371-440 38-113 (115)
344 PF08713 DNA_alkylation: DNA a 65.9 98 0.0021 27.5 12.4 141 119-284 54-196 (213)
345 KOG0392 SNF2 family DNA-depend 65.6 36 0.00078 38.4 9.0 232 116-357 77-325 (1549)
346 KOG0301 Phospholipase A2-activ 65.4 1.9E+02 0.004 30.6 17.1 149 290-445 549-707 (745)
347 PLN03205 ATR interacting prote 65.3 1.4E+02 0.0031 29.2 12.0 160 242-402 322-519 (652)
348 KOG1087 Cytosolic sorting prot 63.5 40 0.00087 34.1 8.5 101 379-499 14-116 (470)
349 PF12783 Sec7_N: Guanine nucle 62.9 62 0.0013 27.6 8.8 109 87-199 36-157 (168)
350 PF09324 DUF1981: Domain of un 62.8 13 0.00029 27.7 3.9 70 198-267 14-83 (86)
351 cd03565 VHS_Tom1 VHS domain fa 62.3 51 0.0011 27.3 7.7 73 371-443 39-116 (141)
352 KOG0301 Phospholipase A2-activ 62.2 2.1E+02 0.0046 30.2 16.4 161 131-296 558-727 (745)
353 PF04499 SAPS: SIT4 phosphatas 61.5 2E+02 0.0043 29.5 13.3 74 403-476 52-128 (475)
354 PF08767 CRM1_C: CRM1 C termin 61.4 1.6E+02 0.0034 28.4 15.0 181 301-496 43-245 (319)
355 KOG2073 SAP family cell cycle 61.1 1E+02 0.0022 33.8 11.4 65 360-424 180-251 (838)
356 PF08216 CTNNBL: Catenin-beta- 61.0 10 0.00022 29.5 3.0 42 135-177 64-105 (108)
357 PF06012 DUF908: Domain of Unk 61.0 38 0.00082 32.8 7.8 61 107-167 254-324 (329)
358 smart00802 UME Domain in UVSB 60.1 56 0.0012 25.5 7.1 80 327-411 11-95 (107)
359 cd03565 VHS_Tom1 VHS domain fa 59.1 1E+02 0.0022 25.5 9.9 98 381-498 16-118 (141)
360 KOG1988 Uncharacterized conser 58.6 2.2E+02 0.0047 31.1 12.8 251 76-357 27-281 (970)
361 PF12074 DUF3554: Domain of un 58.5 1.8E+02 0.004 28.2 17.4 192 202-401 23-237 (339)
362 PF08389 Xpo1: Exportin 1-like 58.3 40 0.00087 27.7 6.8 142 131-309 2-148 (148)
363 KOG0889 Histone acetyltransfer 57.6 5.5E+02 0.012 33.4 20.0 314 116-442 984-1346(3550)
364 PF08389 Xpo1: Exportin 1-like 57.5 53 0.0011 27.0 7.3 125 218-352 4-148 (148)
365 KOG2199 Signal transducing ada 57.2 30 0.00064 33.5 6.0 78 413-500 45-123 (462)
366 KOG1410 Nuclear transport rece 57.1 2.7E+02 0.0058 29.6 17.4 313 162-494 8-333 (1082)
367 smart00567 EZ_HEAT E-Z type HE 56.8 22 0.00047 20.1 3.3 14 343-356 2-15 (30)
368 KOG2149 Uncharacterized conser 56.2 1.3E+02 0.0028 29.6 10.1 131 287-422 60-191 (393)
369 KOG2021 Nuclear mRNA export fa 55.9 2.9E+02 0.0064 29.8 18.1 57 86-148 206-262 (980)
370 KOG1924 RhoA GTPase effector D 55.5 3E+02 0.0065 29.8 14.5 153 300-491 207-360 (1102)
371 KOG1788 Uncharacterized conser 54.5 3.6E+02 0.0079 30.4 20.6 232 71-319 464-716 (2799)
372 KOG1832 HIV-1 Vpr-binding prot 54.3 1E+02 0.0022 33.6 9.7 166 107-283 592-783 (1516)
373 KOG2149 Uncharacterized conser 54.0 2E+02 0.0044 28.3 11.1 113 245-359 60-172 (393)
374 PF03130 HEAT_PBS: PBS lyase H 53.4 12 0.00026 20.7 1.8 26 344-380 1-26 (27)
375 PF12054 DUF3535: Domain of un 53.2 1.4E+02 0.003 30.3 10.5 79 87-170 101-179 (441)
376 PF09758 FPL: Uncharacterised 53.1 1.2E+02 0.0026 25.4 8.2 123 148-270 15-147 (149)
377 PF01417 ENTH: ENTH domain; I 52.5 58 0.0013 26.2 6.5 96 383-495 16-121 (125)
378 PF08064 UME: UME (NUC010) dom 52.0 91 0.002 24.3 7.2 80 327-411 11-95 (107)
379 KOG2038 CAATT-binding transcri 51.7 3.4E+02 0.0075 29.3 18.8 149 72-231 229-409 (988)
380 KOG2073 SAP family cell cycle 50.8 3.8E+02 0.0083 29.6 17.8 39 194-232 183-221 (838)
381 PF11791 Aconitase_B_N: Aconit 50.8 48 0.0011 27.5 5.5 46 344-400 79-124 (154)
382 PF04869 Uso1_p115_head: Uso1 50.3 2.4E+02 0.0052 27.1 15.6 157 243-399 34-231 (312)
383 KOG1087 Cytosolic sorting prot 50.1 1E+02 0.0023 31.3 8.9 71 371-441 39-111 (470)
384 KOG2199 Signal transducing ada 49.3 61 0.0013 31.5 6.7 72 371-442 46-118 (462)
385 KOG3132 m3G-cap-specific nucle 49.3 12 0.00026 33.3 2.0 45 10-54 24-68 (325)
386 KOG4524 Uncharacterized conser 48.7 71 0.0015 35.0 7.7 96 240-337 800-899 (1014)
387 PF11229 DUF3028: Protein of u 48.2 3.2E+02 0.007 28.0 14.8 238 241-494 95-352 (589)
388 KOG2038 CAATT-binding transcri 48.1 3.9E+02 0.0085 28.9 19.8 264 160-446 305-609 (988)
389 PF08713 DNA_alkylation: DNA a 47.5 57 0.0012 29.0 6.3 77 285-369 120-196 (213)
390 PF09324 DUF1981: Domain of un 47.2 99 0.0021 23.0 6.4 67 113-184 14-84 (86)
391 PF06743 FAST_1: FAST kinase-l 47.1 63 0.0014 23.0 5.2 67 221-288 3-69 (71)
392 PF08216 CTNNBL: Catenin-beta- 46.9 22 0.00048 27.6 2.9 41 389-431 65-105 (108)
393 PF09758 FPL: Uncharacterised 45.4 27 0.00058 29.1 3.4 125 316-440 15-147 (149)
394 KOG2676 Uncharacterized conser 42.1 37 0.00079 32.5 4.1 63 137-199 376-440 (478)
395 PF01365 RYDR_ITPR: RIH domain 41.1 98 0.0021 27.5 6.7 96 343-444 76-171 (207)
396 PF14666 RICTOR_M: Rapamycin-i 40.6 2.8E+02 0.0061 25.1 11.8 130 215-356 77-224 (226)
397 KOG1791 Uncharacterized conser 40.0 3.1E+02 0.0067 32.2 11.2 195 111-340 1434-1641(1758)
398 PF06012 DUF908: Domain of Unk 39.0 1.3E+02 0.0029 29.1 7.7 65 132-197 237-306 (329)
399 PF07923 N1221: N1221-like pro 38.3 52 0.0011 31.3 4.7 107 369-475 59-200 (293)
400 PF12397 U3snoRNP10: U3 small 37.2 69 0.0015 25.5 4.6 68 160-233 7-76 (121)
401 PF12783 Sec7_N: Guanine nucle 36.8 2.6E+02 0.0057 23.7 9.4 80 279-359 67-148 (168)
402 KOG2549 Transcription initiati 36.6 5E+02 0.011 26.9 12.7 140 163-313 211-369 (576)
403 KOG1410 Nuclear transport rece 35.9 5.7E+02 0.012 27.3 25.7 301 74-399 6-334 (1082)
404 PF14631 FancD2: Fanconi anaem 35.2 4E+02 0.0087 31.7 11.7 142 249-398 441-582 (1426)
405 COG5101 CRM1 Importin beta-rel 34.5 5.9E+02 0.013 27.0 18.8 408 75-492 190-649 (1053)
406 PF04510 DUF577: Family of unk 34.2 3E+02 0.0066 23.6 12.1 155 329-495 5-164 (174)
407 KOG0803 Predicted E3 ubiquitin 33.6 8.6E+02 0.019 28.7 15.3 200 287-493 43-261 (1312)
408 KOG0889 Histone acetyltransfer 33.5 1.2E+03 0.027 30.6 18.7 179 200-380 1125-1329(3550)
409 TIGR01385 TFSII transcription 33.2 1E+02 0.0023 29.2 5.7 37 459-495 37-73 (299)
410 KOG2011 Sister chromatid cohes 32.9 7.8E+02 0.017 28.0 15.3 134 295-440 297-433 (1048)
411 KOG4524 Uncharacterized conser 32.5 1.8E+02 0.0038 32.2 7.7 95 285-381 803-900 (1014)
412 PF11229 DUF3028: Protein of u 31.7 5.9E+02 0.013 26.2 16.5 233 159-399 97-353 (589)
413 PF12463 DUF3689: Protein of u 30.6 4.8E+02 0.01 24.9 12.1 83 284-366 94-182 (303)
414 PF15178 TOM_sub5: Mitochondri 30.1 71 0.0015 20.3 2.6 21 18-38 9-30 (51)
415 KOG2022 Nuclear transport rece 30.1 6.2E+02 0.014 28.0 11.0 145 161-314 464-619 (982)
416 cd06561 AlkD_like A new struct 29.4 2.2E+02 0.0049 24.7 7.1 74 288-368 108-181 (197)
417 KOG2085 Serine/threonine prote 28.9 5.9E+02 0.013 25.3 15.3 84 149-233 167-250 (457)
418 PF04510 DUF577: Family of unk 28.9 3.8E+02 0.0082 23.1 11.3 150 288-443 6-165 (174)
419 PF14666 RICTOR_M: Rapamycin-i 28.3 4.5E+02 0.0098 23.8 12.8 131 87-231 78-225 (226)
420 PF12765 Cohesin_HEAT: HEAT re 27.6 49 0.0011 20.7 1.7 40 308-351 2-41 (42)
421 PF14663 RasGEF_N_2: Rapamycin 27.0 1.3E+02 0.0028 23.9 4.5 31 160-190 9-39 (115)
422 cd06561 AlkD_like A new struct 26.7 2.8E+02 0.0061 24.1 7.2 68 330-407 108-177 (197)
423 PF04064 DUF384: Domain of unk 26.6 2.1E+02 0.0046 19.5 5.8 43 458-500 11-54 (58)
424 KOG2011 Sister chromatid cohes 26.1 1E+03 0.022 27.2 14.9 134 341-495 300-435 (1048)
425 PF08454 RIH_assoc: RyR and IP 25.1 3.3E+02 0.0071 21.4 6.3 41 297-337 65-106 (109)
426 PF13925 Katanin_con80: con80 24.9 4.2E+02 0.009 22.5 7.6 71 202-273 29-99 (164)
427 PF08623 TIP120: TATA-binding 24.5 3.6E+02 0.0078 23.2 6.9 95 214-312 39-145 (169)
428 PF07571 DUF1546: Protein of u 24.4 2.1E+02 0.0045 21.6 5.0 59 85-145 18-77 (92)
429 PF10257 RAI16-like: Retinoic 24.3 6.8E+02 0.015 24.5 12.6 130 279-411 3-169 (353)
430 cd03562 CID CID (CTD-Interacti 23.6 3.6E+02 0.0078 21.0 6.7 85 255-350 17-101 (114)
431 PF14663 RasGEF_N_2: Rapamycin 23.6 3.7E+02 0.0081 21.2 10.9 39 371-411 9-47 (115)
432 KOG2140 Uncharacterized conser 23.5 8.4E+02 0.018 25.3 11.1 70 363-438 231-300 (739)
433 smart00802 UME Domain in UVSB 23.0 3.6E+02 0.0077 21.1 6.1 68 116-188 11-83 (107)
434 KOG2676 Uncharacterized conser 22.2 81 0.0018 30.3 2.8 56 178-233 375-431 (478)
435 PLN03205 ATR interacting prote 21.9 5E+02 0.011 25.6 7.9 114 286-399 324-446 (652)
436 PF01365 RYDR_ITPR: RIH domain 21.8 2.3E+02 0.0051 25.1 5.7 96 131-232 75-170 (207)
437 PF12397 U3snoRNP10: U3 small 21.7 4.1E+02 0.0089 21.0 9.4 66 286-357 7-74 (121)
438 PF14631 FancD2: Fanconi anaem 20.5 1.5E+03 0.033 27.2 19.6 100 293-399 443-542 (1426)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.2e-88 Score=598.72 Aligned_cols=514 Identities=53% Similarity=0.838 Sum_probs=468.7
Q ss_pred CCchHhhhhcCC--CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcC
Q 009622 7 SKADSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWS 84 (530)
Q Consensus 7 ~~~~~~~~~~k~--~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s 84 (530)
+.++.|+.+||. .++++|+||||++++++|||+||++.+.||||.....+...++ --+..++....+|.+.+.|.|
T Consensus 5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss--~i~meqq~~~elp~lt~~l~S 82 (526)
T COG5064 5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS--FIPMEQQFYSELPQLTQQLFS 82 (526)
T ss_pred cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc--cCchhHHhhhhhHHHHHHHhh
Confidence 367889999998 4889999999999999999999999999999984322221111 012223333578999999999
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009622 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (530)
Q Consensus 85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 164 (530)
+|.+.|..|...+|+++|.+.+|+++.+++.|++|.++++|......-++++|+|+|+|+++++..+++.+++.|++|.+
T Consensus 83 dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlf 162 (526)
T COG5064 83 DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF 162 (526)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHH
Confidence 99999999999999999999999999999999999999999654436889999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC-chhHHHHHHHHhhhhccCC-CCCChhhhh
Q 009622 165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGK-PQPPFDQVS 242 (530)
Q Consensus 165 ~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L~~~~-~~~~~~~~~ 242 (530)
+++|.+++.+++++++|+|+|++++++.+|+.++..|++.+++.++..+. +..+.+++.|+|+|||++. |.+......
T Consensus 163 iqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is 242 (526)
T COG5064 163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS 242 (526)
T ss_pred HHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999995433 5799999999999999998 788888999
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH
Q 009622 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 322 (530)
..+|.|.+++.+.|+++..+|||+++++++.+.+.++.+++.|+.++|+++|.+++..++.+|++.+||+++|++.+++.
T Consensus 243 qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv 322 (526)
T COG5064 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV 322 (526)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC-
Q 009622 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG- 401 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~- 401 (530)
+++.|+++.+..+|+++ ...+|++|||+++|+++++.++++.+++.+++|+|+++|...+..++++||||+.|...++
T Consensus 323 iI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 323 IINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred heecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999 8899999999999999999999999999999999999999999999999999999999877
Q ss_pred -CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009622 402 -THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 480 (530)
Q Consensus 402 -~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 480 (530)
.|+.+++|+++|++++|+++|+..+.++.+.+++++.++++.++.+........|.|..++++.||++.|..+|++.|.
T Consensus 402 ~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~ 481 (526)
T COG5064 402 NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNR 481 (526)
T ss_pred CCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcccc
Confidence 5789999999999999999999999999999999999999999998877777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCC--CCCCCCCCCCcccCCCCCCCCCCCCCc
Q 009622 481 EIYEKSVKLLETYWLDDEDET--MPPGDASQPGFGFGGNGNPPAPSGGFN 528 (530)
Q Consensus 481 ~v~~~a~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (530)
+||.+|+.||++||++++.-+ +|++.+. .|+|.++. .+++.|+
T Consensus 482 ~iy~KAYsIIe~fFgeeD~vd~lapet~g~--tftfg~~~---~~qg~f~ 526 (526)
T COG5064 482 TIYDKAYSIIEKFFGEEDAVDELAPETAGN--TFTFGSNV---NQQGNFN 526 (526)
T ss_pred HHHHHHHHHHHHHcccchhhhhcCccccCC--eeecCCCc---cccCCCC
Confidence 999999999999999887533 6776653 78897664 4554443
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-85 Score=626.14 Aligned_cols=508 Identities=65% Similarity=1.015 Sum_probs=460.7
Q ss_pred chHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCCh
Q 009622 9 ADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDS 87 (530)
Q Consensus 9 ~~~~~~~~k~-~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~ 87 (530)
...|+++||+ +++++|+||||++..+++||.||++.++|||+...+.... . .....+......+..+..+.|+++
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~S~~~ 80 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLD--E--LLSDSQSQASNLELMLAALYSDDP 80 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccc--c--ccchhHHHhhhhHHHHHHHhCCCH
Confidence 3456666776 6999999999999999999999999999999932221110 0 111122222347889999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009622 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (530)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 167 (530)
..+..+...++++++.+.+|++..++..|++|.||++|...+++.++.+|+|+|+||++++++....+++.|++|.|+++
T Consensus 81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L 160 (514)
T KOG0166|consen 81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL 160 (514)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence 99999999999999999899999999999999999999876669999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHH
Q 009622 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALP 246 (530)
Q Consensus 168 L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~ 246 (530)
+.+++..++++|+|+|+|++++++.+|+.++..|++++|+.++..+....+.++++|+|+|||+++ |.+.+.....++|
T Consensus 161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp 240 (514)
T KOG0166|consen 161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP 240 (514)
T ss_pred hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999965555689999999999999999 8888899999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc
Q 009622 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~ 326 (530)
.|..++.+.|++++.++||+++||++++.+.++.+++.|+++.|+++|.+.+..++.+|++++||+++|++.+++.+++.
T Consensus 241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~ 320 (514)
T KOG0166|consen 241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS 320 (514)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH
Q 009622 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~ 406 (530)
|+++.|..++...+...++++|||+++|+++|++++++.+++.|++|.|+.+|+.++.++|++|+||++|++.+++++++
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence 99999999999654777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009622 407 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS 486 (530)
Q Consensus 407 ~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a 486 (530)
.+|++.|++++|+++|...|.+++..+++++.++++.++...... + +++..+++++||+++|+.||+|+|++||++|
T Consensus 401 ~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~--~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A 477 (514)
T KOG0166|consen 401 KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG--T-NPLAIMIEEAGGLDKIENLQSHENEEIYKKA 477 (514)
T ss_pred HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc--c-cHHHHHHHHccChhHHHHhhccccHHHHHHH
Confidence 999999999999999999999999999999999999999876432 1 8899999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009622 487 VKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 529 (530)
Q Consensus 487 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (530)
..||++||.++++++... ....+|+|.++ .|.++|||
T Consensus 478 ~~II~~yf~~e~~~~~~~--~~~~~~~~~~~----~~~~~f~f 514 (514)
T KOG0166|consen 478 YKIIDTYFSEEDDEDDQQ--PTTSQFTFQVQ----APDGGFNF 514 (514)
T ss_pred HHHHHHhcCCCccccccc--ccccccccCCC----CCCCCCCC
Confidence 999999999876554222 11126777655 38899998
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-43 Score=338.16 Aligned_cols=368 Identities=26% Similarity=0.403 Sum_probs=329.6
Q ss_pred CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.+|.+++.+.. .++.+|++|+|+|.+++++. ....+.+++.|.+|.|+.++.+++ ..++++|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 799999999985 56999999999999999986 677888899999999999999999 999999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622 152 TKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
++.+++.|+++.|+.++..++. .+..++.|+|.|+|.+....-..-.-..+++.|..++ .+.|++++..+||++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987654 7889999999999977622222223344788999999 8999999999999999999
Q ss_pred cCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHH
Q 009622 231 RGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRT 308 (530)
Q Consensus 231 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~ 308 (530)
.+. +........|++|.|+.+|.+.+..++..++++++|++.+++.+.+.++..|+++.|..++. +....++..|+|+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 887 44455667899999999999999999999999999999999999999999999999999999 5667799999999
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
++||+.|+.++.+.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+|++|+.+|...|.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 9999999999999999999999999999999 99999999999999998 789999999999999999999988899999
Q ss_pred HHHHHHHHHhhcCCC-------HHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622 388 KEAAWAISNATSGGT-------HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~-------~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
..++.+|.|+...+. ......+-+.|+++.+-.+-.+++.++-..|...+.+.+...
T Consensus 425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999999999986442 234556668899999988888888899999888888777554
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.2e-43 Score=313.12 Aligned_cols=372 Identities=24% Similarity=0.342 Sum_probs=324.0
Q ss_pred Cchhhhc--CCHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 009622 66 PGTAKKL--ENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALT 142 (530)
Q Consensus 66 ~~~~~~~--~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~ 142 (530)
++++..+ +.+|++++++. ....-.+++|+|+|.+++|+. ....+.+++.|.+|.++++|.++. .+++.+++|+|+
T Consensus 105 PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALG 182 (526)
T COG5064 105 PPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALG 182 (526)
T ss_pred CCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhc
Confidence 4444433 68999999995 556678999999999999986 667777889999999999999998 899999999999
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHH
Q 009622 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220 (530)
Q Consensus 143 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~ 220 (530)
|++.+++.+++.+.+.|++..++.++.+. +..+.+.+.|+|+|+|.+...--+.-.-...++.|.+++ .+.|+++..
T Consensus 183 NiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlv 261 (526)
T COG5064 183 NIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLV 261 (526)
T ss_pred cccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHH
Confidence 99999999999999999999999999774 457889999999999965422112111223788899998 889999999
Q ss_pred HHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc
Q 009622 221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299 (530)
Q Consensus 221 ~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 299 (530)
.|||++++|+.+. .........|+.+.|+.+|.+++..++..+++.++|+..+++.+.+.++..|+++.+..+|+++..
T Consensus 262 DA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke 341 (526)
T COG5064 262 DACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE 341 (526)
T ss_pred HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh
Confidence 9999999999987 333445567888899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHH
Q 009622 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLV 376 (530)
Q Consensus 300 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~ 376 (530)
.++..|||+++|+..|+.++.+.+++.+++|.|+.+|.+. +..++++|||+++|..++ -|+.++++++.|+|.+|+
T Consensus 342 ~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc 420 (526)
T COG5064 342 NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC 420 (526)
T ss_pred hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence 9999999999999999999999999999999999999998 999999999999999984 688999999999999999
Q ss_pred HHHhcCchhHHHHHHHHHHHhhcCCC---------H-HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622 377 ALLENAEFDIKKEAAWAISNATSGGT---------H-EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 377 ~ll~~~~~~v~~~a~~aL~nl~~~~~---------~-~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll 441 (530)
.+|...+.++.+-++.++-|+...|. . .+..++-+.|+++.+..+-++.+.++-..|-.++..++
T Consensus 421 ~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 421 DLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred HHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 99999888899999999999987662 2 34445556899999999999999988888777766655
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=355.08 Aligned_cols=408 Identities=20% Similarity=0.215 Sum_probs=344.6
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
-+.+|.++..|.++++..|..|++.+.++++.. .+.+..+++.|++|.|+++|.+++++.+|++|+|+|++|+.+++++
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 379999999999999999999999998887664 4578889999999999999987654799999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHhhhCCCch-----------hhhh---HhhcCChHHHHH
Q 009622 152 TKVVIDHGAVPIFVKLLYSPS---------DDVREQAVWALGNIAGDSPR-----------CRDL---VLSQGGLVPLLA 208 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~---------~~~~~~a~~~L~nl~~~~~~-----------~~~~---i~~~~~i~~Ll~ 208 (530)
+..+++.|+++.|+.++.+++ ..++++|+|+|+|||++.+. .|+. ....|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999997654 34699999999999987543 2222 134577888888
Q ss_pred hhcCCCchhHH----HHHHHHhhhhccCC-CCCChh-------------------hhhchHHHHHHhhcCCChhHHHHHH
Q 009622 209 QLNGQPKLSML----RNATWTLSNFCRGK-PQPPFD-------------------QVSPALPALAHLIHSNDDEVLTDAC 264 (530)
Q Consensus 209 ll~~~~~~~~~----~~a~~~L~~L~~~~-~~~~~~-------------------~~~~~l~~L~~ll~~~d~~v~~~a~ 264 (530)
++ +..+.... ..++|+|.+|++++ +..... ...++++.|+.++...+.+++..++
T Consensus 347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 77 44443333 35789999999987 332121 1135667888899989999999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhH
Q 009622 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (530)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 344 (530)
|+|.+++.++.+..+.+.+.|+++.|+++|.+++..++..|++++++++.++++++..+++.|++|.|+.+|.++ +..+
T Consensus 426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i 504 (2102)
T PLN03200 426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA 504 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 999999999889999999999999999999999999999999999999999998899999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009622 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424 (530)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~ 424 (530)
+++|+|+|+|++.+++.....+.+.|+++.|+++|.+++++++..|+|+|.|++..++.+. ++.++.+|.+
T Consensus 505 qeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLls 575 (2102)
T PLN03200 505 KEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLLG 575 (2102)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhcC
Confidence 9999999999998754444444478999999999999999999999999999998776553 4677888999
Q ss_pred CChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCC
Q 009622 425 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDED 499 (530)
Q Consensus 425 ~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~ 499 (530)
+++.++..++.++.+++...+.... ........||++.|.+|+.|+++++++.|.++|..||.+..+
T Consensus 576 dd~~~~~~aL~vLgnIlsl~~~~d~--------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 576 DLPESKVHVLDVLGHVLSVASLEDL--------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred CChhHHHHHHHHHHHHHhhcchhHH--------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 9999999999999999886654221 122344579999999999999999999999999999986543
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=8.2e-38 Score=342.65 Aligned_cols=415 Identities=19% Similarity=0.196 Sum_probs=367.8
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.++.++.+|...+.+.|..++++|..++.++ ...++.+.+.|++|.|+++|.+++ +.+|..|+|+|++++.++.+++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 56788999999999999999999999987664 677889999999999999999988 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+...|++++|+++| .+.+...++.++|+|.+|+..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998887888888899999999999 677899999999999999754
Q ss_pred CCCCC-----------------------------------h---hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622 233 KPQPP-----------------------------------F---DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 233 ~~~~~-----------------------------------~---~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
..... . ....++++.|+.++.++++.++..++|+|.+++...
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 31110 0 012478999999999999999999999999999998
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
.+..+.++..|+++.++.+|.+++..++..++++|++++.+.. .+...+++.|+++.|+++|.+. +.+++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999997543 4455678999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH-H-HHHHHcCChHHHHhccCCCChHHHH
Q 009622 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ-I-KFLVIQGCIKPLCDLLVCPDPRIVT 431 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~l~~L~~lL~~~~~~v~~ 431 (530)
|++... +....+.+.|+++.|+++|.+++++.|+.|+|+|.+++.+.+.++ . .++...|.+.+|+++|+..|.+...
T Consensus 720 nLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 998864 456677788999999999999999999999999999999876554 3 6667889999999999999888776
Q ss_pred H--HHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009622 432 V--CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 432 ~--al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
. ++++|..+.+..+.... ..+++..+++..++++.|.....|.+|.++++|.+||+++-.+
T Consensus 799 ~~~al~~l~~l~~~~~~~~~----~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 799 TSEALEALALLARTKGGANF----SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred HHHHHHHHHHHHhhcccCCC----CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 6 99999999986555433 3578999999999999997777999999999999999998764
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-29 Score=227.37 Aligned_cols=363 Identities=20% Similarity=0.220 Sum_probs=314.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+...+++-.+++.++.+|..|..++.+++-. ....-.+++-+.+..|+.-+..+. .++|..++.|++|++.. ++++
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNK 160 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccch
Confidence 4678888899999999999999999998765 333334455556666665554445 58999999999999994 7888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+...|++..+.++-++.+..++..+..+|.|+.... +.|+.++..|+++.|+.++ ++.+..++..++.++++++-.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence 88999999999999888899999999999999996554 4789999999999999999 899999999999999999988
Q ss_pred CCCCChhhhhc--hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622 233 KPQPPFDQVSP--ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 233 ~~~~~~~~~~~--~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 310 (530)
..........+ ++|.|+.++.++++.+.-.+..+|.+++..... ...++++|.+|.++++|+++........+.|+.
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-q~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-QREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 65555544444 999999999999999999999999999977654 456889999999999999998888999999999
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009622 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (530)
|++...-. .-.+++.|++.+|+.+|..+.+.+++..|..+|.|++..+......+.+.|.+|.++.++.++...+|.+.
T Consensus 318 nisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 318 NISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred hcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 99874432 23567999999999999998667799999999999999888889999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009622 391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~ 445 (530)
..++..++... ....++.+.|+++.|+.++.+.+.+++-++..+|.++...-+
T Consensus 397 sac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 397 SACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred HHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 99999999853 677889999999999999999999999999999999986543
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.5e-29 Score=224.08 Aligned_cols=363 Identities=19% Similarity=0.246 Sum_probs=318.0
Q ss_pred hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
.+..+..++..+..+..++|..++.++.+++.. +.....+..+|.+..+.++-++.+ ..+|..+..+|.|++. +.+
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~E 199 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRE 199 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhh
Confidence 456788888888888899999999999999877 566677888999999999877777 8999999999999998 789
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
+++.++.+|++|.|+.++++.+..++..|..+++||+.+.. .|+.+.+.+ .++.|++++ .++++.++..|..+|.+
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998776 688888888 999999999 88899999999999999
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-chhHHHHHH
Q 009622 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALR 307 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~~~~a~~ 307 (530)
|+.+..........+.+|.++++++++-.........|+.|++-++- +...+.+.|++..|+.+|..++ +.++..|..
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 99987777777889999999999998877777777889999986653 2345778999999999999865 559999999
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
+|.|++.........+.+.|.+|.+..++.++ .-.+|.+...+++.++.. ......+.+.|++|.|+.+..+.+.+++
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhc
Confidence 99999998888888999999999999999998 888999998899888764 3456678999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHH------cCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622 388 KEAAWAISNATSGGTHEQIKFLVI------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~------~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
.+|+.||.|++.. .++...+++ .|+-..|..++.+.+..+...+.|.+..++...
T Consensus 435 gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 435 GNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred ccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999984 455555443 255667899999999999999999999988765
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=1.4e-24 Score=221.19 Aligned_cols=389 Identities=20% Similarity=0.183 Sum_probs=318.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
+++-..++..+ .+...++..|.+++.. ......|...|+++.|+++|++++ .++...++++|.+++. ..+++..+
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM 327 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 34444444433 3445778889998765 466678889999999999999887 8999999999999999 68899999
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC
Q 009622 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (530)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 235 (530)
.+.|+++.|.+++.+++..++..++++|.|++.+.. .|..+++.|++|.|+.++ .+ +..+..++.+|+++|..+..
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL-~d--~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELL-KD--PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHh-CC--CchHHHHHHHHHHhccCHhh
Confidence 999999999999999999999999999999987776 799999999999999999 33 34567799999999998876
Q ss_pred CChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622 236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~ 314 (530)
.......+++|.+++++.+ +++.+...+++.+.|++.+.. +.+.+++.++++.|++........+ .+..+.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHh
Confidence 6666778899999887654 567777788889999987664 5577888888999998865544322 4468889988
Q ss_pred CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHH
Q 009622 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAW 392 (530)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~ 392 (530)
+.+.....+. +.+..|..++..+.+++...++..+|+|+...+.+..+.+-+.+++|.|.+.|..+ ++++..+++.
T Consensus 480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 7644333332 47778888888776889999999999999876555555566789999999999876 5689999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhccC--CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009622 393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK 470 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~--~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (530)
.++.++. +++....+.+.|+++.|+++|. .+|.+++..++.+++.++.+.+. ...++.+.+....
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-----------r~~ll~~~~~~~y 624 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-----------REVLLKETEIPAY 624 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-----------HHHHHhccchHHH
Confidence 9999997 6678888889999999999997 45788999999999999998765 2456677899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 009622 471 IESLQTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 471 l~~l~~~~~~~v~~~a~~il~~ 492 (530)
+.+|+++.|++|.+.|...++-
T Consensus 625 lidL~~d~N~~ir~~~d~~Ldi 646 (708)
T PF05804_consen 625 LIDLMHDKNAEIRKVCDNALDI 646 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999888777763
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=1.6e-23 Score=213.41 Aligned_cols=361 Identities=19% Similarity=0.209 Sum_probs=303.9
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.++.|++.|.+++.++...++..|.++... ..+...|.+.|+++.|++++.+++ ..++..++++|.|++. +++.+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence 6899999999999999999999999998655 567889999999999999999988 8999999999999999 78899
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+++.|++|.|+.+|.++ ..+..|+.+|.+++.+.. .|..+...++++.+++++...++..+...+++.+.|++.+
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999754 466779999999998765 7889999999999999987777788888899999999999
Q ss_pred CCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHh
Q 009622 233 KPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG 310 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~ 310 (530)
..+.......++++.|++.... .|+- .+..+.|++.++......+. +++..|+.++..+ +++....++.+|+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 8766666666788888776544 3433 33588888887744333332 5788888888764 6789999999999
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHH
Q 009622 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIK 387 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 387 (530)
|+...+....+.+-+.+++|.|..+|..+. .+++.-+++..++.++. ++.....+.+.|+++.|+.++... |.++.
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 999876666666667899999999998653 56799999999999875 467777888999999999999766 68999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 009622 388 KEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 449 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~ 449 (530)
.+.++++..+..+. +.++.++ +.+++..|++++.+.++.++..|-.+|.-+....+.+..
T Consensus 596 lQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ 656 (708)
T PF05804_consen 596 LQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAE 656 (708)
T ss_pred HHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999974 5666666 468899999999999999999999999999988877643
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.3e-20 Score=183.64 Aligned_cols=388 Identities=20% Similarity=0.290 Sum_probs=314.1
Q ss_pred CHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.+.+|+..|+.. |+..|++|+..+..+++....+....+--..++|.|+.+|++..+.+++..|+++|++++.--|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 568888888875 9999999999999999987555555444456899999999998889999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622 153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
..+++.++||.|+.-|.. ...++.++++.+|-.|+...+. .+++.|++...+..+ +.....+++.|+.+..|.|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987766 7789999999999999988763 678999999999999 77789999999999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCC----CchhHHH
Q 009622 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIP 304 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~----~~~~~~~ 304 (530)
.-+...+..+...+|.|..+|...|...++.++.++.++++. .++..+.+...|++....+++.-. +..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 988888888999999999999999999999999999999854 566778889999999999998764 2345667
Q ss_pred HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc-------------hhHHHHHH----------------------
Q 009622 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK-------------KSIKKEAC---------------------- 349 (530)
Q Consensus 305 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-------------~~v~~~a~---------------------- 349 (530)
.++.+..++++++-....+++.++...|..+|..... |.-..+..
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 7888888898888777777787887777777753100 00000000
Q ss_pred ------------------------------HHHHHH-------------h---------cCCHHHHHHHHHhCcHHHHHH
Q 009622 350 ------------------------------WTVSNI-------------T---------AGNREQIQAVIEANIIGPLVA 377 (530)
Q Consensus 350 ------------------------------~~L~nl-------------~---------~~~~~~~~~l~~~~~i~~L~~ 377 (530)
.++..+ . ...|+..+.+.. .++|.|++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve 562 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE 562 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence 011100 0 011122222222 47899999
Q ss_pred HHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCc
Q 009622 378 LLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDV 455 (530)
Q Consensus 378 ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~ 455 (530)
++.+. ++.||..++.||..+.+..+.+.+..++.. .+-..+..+|.++|..++..+|.....|++..+.
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd--------- 633 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD--------- 633 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH---------
Confidence 98877 899999999999999999999998888854 5666788999999999999999999999877654
Q ss_pred hhhHHHhhhhccHHHHHHHhc
Q 009622 456 NVFTQMIDDAEGLEKIESLQT 476 (530)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~l~~ 476 (530)
.|...|.+.|++..+..|..
T Consensus 634 -~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 634 -TFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred -HhhhhHhhhhHHHHHHHHhc
Confidence 37888999999999999976
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=4.1e-18 Score=169.95 Aligned_cols=366 Identities=20% Similarity=0.233 Sum_probs=285.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch--hh
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CR 194 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~--~~ 194 (530)
-+|..+.+|.+.+ +.+|..|+.-+-.+|.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+|+|.||..+... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4778899999888 99999999999999999999999999999999999999999999999999999999976654 66
Q ss_pred hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC--------------CChhHH
Q 009622 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--------------NDDEVL 260 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~--------------~d~~v~ 260 (530)
-.+.+.+.++.++.++....|.++++.++.+|+||++.+ ..+.......++.|..-+-. .+.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 778899999999999977789999999999999999984 44455556666666554321 136788
Q ss_pred HHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCC------CCchhHHHHHHHHhHhhcCCc-----h----------
Q 009622 261 TDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDD-----M---------- 318 (530)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~------~~~~~~~~a~~~L~nl~~~~~-----~---------- 318 (530)
.++..+|.|++....+..+.+.+ .|+|..|+..+++ .+....++|+.++.|++..-. .
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 89999999999876666665654 5889999888763 356678888888888864221 0
Q ss_pred ----------------hhHH----------------------HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009622 319 ----------------QTQC----------------------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (530)
Q Consensus 319 ----------------~~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (530)
.... +....++..-+.+|....++.+.+.++.+|-|++++..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0000 01112344444555544477899999999999998532
Q ss_pred ---H-HHHHH-HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC------ChHH
Q 009622 361 ---E-QIQAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP------DPRI 429 (530)
Q Consensus 361 ---~-~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~------~~~v 429 (530)
. ....+ .+..+++.|++++..++..|...++.+|.||+.+. .. +.++-.++++.|+++|... +.++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 2 22333 46789999999999999999999999999999953 33 4455688999999999643 3568
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCCC
Q 009622 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~il~~~~~~~~ 498 (530)
+..++..|.+++..... ...-+-+.+|+++|..|. ...++.+.+.|..++..+|...|
T Consensus 629 v~~vc~tl~niv~~~~~-----------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVL-----------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHhHHHHHHHhHH-----------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 88899999999865543 245555699999999885 45677899999999999988644
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.79 E-value=1.7e-15 Score=153.66 Aligned_cols=398 Identities=18% Similarity=0.175 Sum_probs=303.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
+.+...+.+.+.+....++..|.+++... .+... ..++.+.|...|.+++ +.++..+++.|.+++..+......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 34777888888888888999999998763 22221 4567889999999988 9999999999999999777777888
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC
Q 009622 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (530)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 235 (530)
.+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 88999999999999999999999999999999877654 4566777788888888 555777888899999999987633
Q ss_pred -CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch-----hH-HHHHHH
Q 009622 236 -PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-----VL-IPALRT 308 (530)
Q Consensus 236 -~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-----~~-~~a~~~ 308 (530)
.......|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+.+.+ +. ...+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 3344457899999999999999999999999999998 555678899999999999999764322 22 233477
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHh-C----cHHHHHHHHhcC
Q 009622 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV-IEA-N----IIGPLVALLENA 382 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~----~i~~L~~ll~~~ 382 (530)
.++++...+....... ..++..+..++.+. ++..+..|.-+++.+++. .+....+ .+. + ++..+.....++
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 8888875443322111 24566777777887 999999999999999864 4555555 332 2 344555555666
Q ss_pred chhHHHHHHHHHHHhhcCCCH---HH----HHHHH---HcCChH-HHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcC
Q 009622 383 EFDIKKEAAWAISNATSGGTH---EQ----IKFLV---IQGCIK-PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG 451 (530)
Q Consensus 383 ~~~v~~~a~~aL~nl~~~~~~---~~----~~~l~---~~~~l~-~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~ 451 (530)
..++|..++.+|.++...+.. +. .+... ..+... .+..+++.+-++++..++..|..++...-.
T Consensus 350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg----- 424 (503)
T PF10508_consen 350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG----- 424 (503)
T ss_pred chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-----
Confidence 789999999999999654432 11 11111 223455 788899999999999999999999877532
Q ss_pred CCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622 452 NTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
...+....|.++.+.+=....+.+..++=..++.++..
T Consensus 425 ------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 425 ------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred ------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 24556667777777666667888888888888888764
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.77 E-value=3.3e-15 Score=151.55 Aligned_cols=402 Identities=20% Similarity=0.196 Sum_probs=296.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009622 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
+..+++.|... ...+.++..+...+.. .+... ....+.+...+++.+ .+....++.+|..+.... ....
T Consensus 5 ~~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l~----~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~- 73 (503)
T PF10508_consen 5 INELLEELSSK--AERLEALPELKTELSS--SPFLE----RLPEPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDS- 73 (503)
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHhh--hhHHH----hchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHH-
Confidence 34555555544 3344555555554433 12122 122334788888776 666778888888888732 2222
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
+ ..+..+.|...|.++++.++..+++.|++++.++......+.+.++++.++.++ .+++..+...|+.+|..++...+
T Consensus 74 l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 74 L-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCch
Confidence 2 346778999999999999999999999999988887778888899999999999 89999999999999999998765
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~ 314 (530)
........+.++.|..++..+++.++..++.++.+++..+++....+.+.|+++.++..+.+++.-++..++.++..++.
T Consensus 152 ~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 152 GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 54444456668889999988888999999999999999999999999999999999999999998999999999999999
Q ss_pred CCchhhHHHhhcCchHHHHHhhcCCC-ch---h-HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHH
Q 009622 315 GDDMQTQCVIEYQALPCLLNLLSGNY-KK---S-IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389 (530)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~-~~---~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 389 (530)
.++..+.+.+.|+++.|..++.+.. ++ . .--......++++...+..+.... ..++..|.+++.+.|+..+..
T Consensus 232 -~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~ 309 (503)
T PF10508_consen 232 -TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREV 309 (503)
T ss_pred -ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHH
Confidence 7777888999999999999997653 23 1 112333566777764444332222 246667777888889999999
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHcC-----ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhh
Q 009622 390 AAWAISNATSGGTHEQIKFL-VIQG-----CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMID 463 (530)
Q Consensus 390 a~~aL~nl~~~~~~~~~~~l-~~~~-----~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~ 463 (530)
|..+++.++. +.+....| ...+ ++..+.........+++..++.++.+++...+.... ++-.+.....++
T Consensus 310 A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~--~~i~~~~~~w~~ 385 (503)
T PF10508_consen 310 AFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQD--NDILSITESWYE 385 (503)
T ss_pred HHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHH
Confidence 9999999987 55666666 3322 366666666778889999999999999876643110 000011122223
Q ss_pred hhcc--HH-HHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622 464 DAEG--LE-KIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 464 ~~~~--~~-~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
..++ .. .+..+...+=+|++-.+..++...+.
T Consensus 386 ~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 386 SLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 2222 33 66777888989999999999987654
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.77 E-value=2.7e-16 Score=157.13 Aligned_cols=363 Identities=20% Similarity=0.224 Sum_probs=275.1
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--h
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--H 151 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~--~ 151 (530)
.+|+.+.+|.+.++.+|-.|+..+..+.... +.....+.+.|.|+.|+.+|.+.. .+++..|+++|.|++.++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 7899999999999999999999999776542 444556668999999999999998 99999999999999998766 8
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-------------CCchh
Q 009622 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------------QPKLS 217 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-------------~~~~~ 217 (530)
.-.+.+.++|+.++++|.. .|.++++.+..+|+||++.+ .++..++. ..+..|...+.. -.+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence 8888899999999999987 78999999999999998774 35555443 356666554421 11467
Q ss_pred HHHHHHHHhhhhccCCC--CCChhhhhchHHHHHHhhc------CCChhHHHHHHHHHHHhccCCh-----HHHHH----
Q 009622 218 MLRNATWTLSNFCRGKP--QPPFDQVSPALPALAHLIH------SNDDEVLTDACWALSYLSDGTN-----DKIQA---- 280 (530)
Q Consensus 218 ~~~~a~~~L~~L~~~~~--~~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~l~~l~~~~~-----~~~~~---- 280 (530)
+..+++.||.|++.... ...+-...|++..|+..++ ..|..-.+++...+.|++..-. ...+.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 89999999999998652 2233446788888888776 2366777888888888874322 00000
Q ss_pred --------------------------------------------HHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcC
Q 009622 281 --------------------------------------------VIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 281 --------------------------------------------~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~ 315 (530)
+....++..-..+|. +.+..+.+.++.+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 001112222122222 34567888999999999987
Q ss_pred Cchh----hHHH-hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC------ch
Q 009622 316 DDMQ----TQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA------EF 384 (530)
Q Consensus 316 ~~~~----~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~ 384 (530)
.... ...+ .+..+++.|+.+|..+ +..+.+.++.+|.|++.+- ..+.++..+.++.|++.|... +.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence 6533 3333 4778999999999999 9999999999999998752 234566678999999999665 36
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhhh
Q 009622 385 DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~~ 444 (530)
++-..++.+|.|++.. +....+.+.+.+.++.|+.+..+. +++....+...+..|=.+.
T Consensus 627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999999975 678888999999999999888765 5577777777776664443
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-16 Score=146.55 Aligned_cols=355 Identities=14% Similarity=0.112 Sum_probs=260.5
Q ss_pred CCChHHHHHHHHHHHHhhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009622 84 SNDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV 161 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i 161 (530)
..+..+...+..++.+....+ ++.....-++.+.+..|.+..++++ .++..++.++|+|+|.++.+.|..+.+.|+-
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 344556666777777765331 0111223356778888888888886 8999999999999999999999999999998
Q ss_pred HHHHHhhCC----C---CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCC
Q 009622 162 PIFVKLLYS----P---SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 162 ~~L~~lL~~----~---~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
..++.+|+. + +.+....+...|.|..-++.+.+..+++.|+++.|...+- .-.+....+.....+.|+.+--
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 888888764 2 3466777888999999999999999999999999988873 3345555555555555544332
Q ss_pred CC--CChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CC-------chhH
Q 009622 234 PQ--PPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-------PSVL 302 (530)
Q Consensus 234 ~~--~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~-------~~~~ 302 (530)
.. .++.....+...+++++.+. .+++.+-+...+.+.++++.-.. .+.+.|.+..++.++.. .. -...
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 11 11222234455566666543 56666667778888877665333 36677899999888876 21 1233
Q ss_pred HHHHHHHhHhhcCCchhhHHHhhcC-chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009622 303 IPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 303 ~~a~~~L~nl~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 381 (530)
..++....-+..|++... .+...+ ++..+..++.+. +....-.+..+++|+++.+ +.+-++++.+++..|++++..
T Consensus 291 k~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HhhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666665543 444444 899999999999 9999999999999999875 556678888999999998864
Q ss_pred -----CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009622 382 -----AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 382 -----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~ 445 (530)
++.+++..++.||.|+.... .....++..|+.+.+...++...|.++..-++.++.+...-+
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 36789999999999999843 445677899999999999999999999999998887765544
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.7e-15 Score=152.83 Aligned_cols=361 Identities=17% Similarity=0.149 Sum_probs=258.5
Q ss_pred CHHHHHHh----hcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009622 74 NLPVMVAG----VWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (530)
Q Consensus 74 ~l~~l~~~----l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~ 149 (530)
.||.++.. .+|+++..|..|+..|..+....++.....+ ..+.+.|.+.+.+++.+ ++..|+++++.++...+
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLE 191 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhc
Confidence 46666655 4589999999999999988765433322222 23577788888888845 99999999999888553
Q ss_pred ---hhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHH
Q 009622 150 ---EHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRN 221 (530)
Q Consensus 150 ---~~~~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~ 221 (530)
...+.+. ..+|.++..+.. .+......++.+|..++...|.+-...+.. ++...+.+.. ++-+..++..
T Consensus 192 ~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ 268 (1075)
T KOG2171|consen 192 NNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHL 268 (1075)
T ss_pred cchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHH
Confidence 3333333 456777766643 566677889999999997776554332221 4555555553 3448999999
Q ss_pred HHHHhhhhccCCCCCC---hhhhhchHHHHHHhhcCC--C-----------h---hHHHHHHHHHHHhccCChHHHHHHH
Q 009622 222 ATWTLSNFCRGKPQPP---FDQVSPALPALAHLIHSN--D-----------D---EVLTDACWALSYLSDGTNDKIQAVI 282 (530)
Q Consensus 222 a~~~L~~L~~~~~~~~---~~~~~~~l~~L~~ll~~~--d-----------~---~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (530)
|+.++..+++..|... ......+++.++.++... | . .--..+..++-.++.+-... .+
T Consensus 269 ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v 345 (1075)
T KOG2171|consen 269 ALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QV 345 (1075)
T ss_pred HHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---he
Confidence 9999999998843222 224466677777766421 1 0 01223444555544332211 11
Q ss_pred HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 009622 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362 (530)
Q Consensus 283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 362 (530)
-.-+++.+..++.+.+|.-|..++.+|+.++.|+.......+ ..+++..+..|.++ +|.||..||.+++.++.+-...
T Consensus 346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHH
Confidence 123567778889999999999999999999999987765543 37889999999999 9999999999999999987788
Q ss_pred HHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HHHhccCCCChHHHHHHHHHHHHH
Q 009622 363 IQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK-PLCDLLVCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~lL~~~~~~v~~~al~~l~~l 440 (530)
++.-....+++.|+..+++. +++|+..|+.++.|++..+..+.+....+ +++. .|..++.++.+.+++.++.+|..+
T Consensus 424 iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 424 IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASV 502 (1075)
T ss_pred HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 88888888999999999887 68999999999999999877665554332 4555 455566778889999999999999
Q ss_pred Hhhhhh
Q 009622 441 LKVGEA 446 (530)
Q Consensus 441 l~~~~~ 446 (530)
....+.
T Consensus 503 A~AA~~ 508 (1075)
T KOG2171|consen 503 ADAAQE 508 (1075)
T ss_pred HHHHhh
Confidence 876654
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=1.2e-15 Score=158.84 Aligned_cols=366 Identities=20% Similarity=0.192 Sum_probs=279.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCChhh
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~--~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
....++.++...|++. -.+.|..+.+. ......+...|.+|.|+++|.-.+ +.+.+..|-.+|.||....++.
T Consensus 198 ts~sllsml~t~D~ee---~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~ 272 (2195)
T KOG2122|consen 198 TSNSLLSMLGTDDEEE---MARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDE 272 (2195)
T ss_pred hhhHHhhhcccCCHHH---HHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcch
Confidence 4446666666666543 34455555444 456677888999999999997654 3678889999999999977766
Q ss_pred HHHHHhCCChHHHHHh----------hCC-----CC--HHHH-HHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--
Q 009622 152 TKVVIDHGAVPIFVKL----------LYS-----PS--DDVR-EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-- 211 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~l----------L~~-----~~--~~~~-~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-- 211 (530)
...-.+.-++..|=++ +.. .+ .+-+ ..|+.+|..++.+. ++|..+-+.|++..+-+++.
T Consensus 273 kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vD 351 (2195)
T KOG2122|consen 273 KRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVD 351 (2195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHH
Confidence 5544333333333221 111 11 1222 35667777776555 48999999999999988773
Q ss_pred ---------CCCchhHHHHHHHHhhhhccCCCCCCh--hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH
Q 009622 212 ---------GQPKLSMLRNATWTLSNFCRGKPQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280 (530)
Q Consensus 212 ---------~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 280 (530)
......+++++..+|.||..++...+. --..+++.+++..|.+..+++..-...+|.||+...+.....
T Consensus 352 h~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKk 431 (2195)
T KOG2122|consen 352 HEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKK 431 (2195)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHH
Confidence 112467899999999999999843332 235899999999999888899888999999999776655544
Q ss_pred H-HHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHHHHhhcCCC---chhHHHHHHHHHHH
Q 009622 281 V-IEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGNY---KKSIKKEACWTVSN 354 (530)
Q Consensus 281 ~-~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~n 354 (530)
+ -+.|-+-.|+.. +....+......+.+|+||+.++.+....+- -.|.+..|+.+|.+.. .-.+.+.|..+|.|
T Consensus 432 vLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN 511 (2195)
T KOG2122|consen 432 VLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN 511 (2195)
T ss_pred HHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence 4 456777777765 5556667888999999999988776655554 4599999999998752 34677888888888
Q ss_pred Hhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009622 355 ITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431 (530)
Q Consensus 355 l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~ 431 (530)
+.. .+.++++.+.+.+++..|+..|++....+..++|.+|+||+.. +++..++|++.|++..|.+++.+++..+..
T Consensus 512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~ 590 (2195)
T KOG2122|consen 512 VSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAM 590 (2195)
T ss_pred HHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhh
Confidence 775 5778889999999999999999999999999999999999997 567889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 009622 432 VCLEGLENILKVGEA 446 (530)
Q Consensus 432 ~al~~l~~ll~~~~~ 446 (530)
-+..+|.|++..-+.
T Consensus 591 GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 591 GSAAALRNLLNFRPA 605 (2195)
T ss_pred hHHHHHHHHhcCCch
Confidence 999999999977643
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.5e-14 Score=129.77 Aligned_cols=317 Identities=15% Similarity=0.157 Sum_probs=250.9
Q ss_pred cCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCC
Q 009622 115 SGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD 189 (530)
Q Consensus 115 ~g~v~~Lv~ll---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~ 189 (530)
.|..+.++..+ .+++ ..+...++.+|..+..+.++ +++..++..++.+|.. .+.++....+..+..-|..
T Consensus 103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 45555554433 3444 78888999999998886665 4556788889998854 6678888889999999988
Q ss_pred CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh----------hhhhchHHHHHHhhcCC-Chh
Q 009622 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF----------DQVSPALPALAHLIHSN-DDE 258 (530)
Q Consensus 190 ~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~----------~~~~~~l~~L~~ll~~~-d~~ 258 (530)
.+..|+.+++.++++.+...+.......+.+.++|++..|..++..+.. ..-.+++..|+..+... |+.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 8889999999999999998886555557999999999999887643221 12245677888888754 799
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc-h---hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-S---VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~---~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (530)
+...++.+|..++-.++ ..+.+.+.|++..|++++.+.+. . ....++..|..++. ++.....+++.|+.+.++.
T Consensus 258 ~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHH
Confidence 99999999999986654 56778899999999999988543 2 44677888888874 7777788999999999998
Q ss_pred hhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009622 335 LLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVI 411 (530)
Q Consensus 335 lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 411 (530)
++. +..+|.|..+++.+++-++...|++...+++.|.-...++.|+.. ...++++|+|++.|++..+ .+++..++.
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l~ 414 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILLA 414 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHHh
Confidence 874 333899999999999999999999999999999999888888765 4679999999999999974 577777776
Q ss_pred cCChHHHHhccCCCChHHHHHHHHHHHHH
Q 009622 412 QGCIKPLCDLLVCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 412 ~~~l~~L~~lL~~~~~~v~~~al~~l~~l 440 (530)
.| ++.|+..-...++.....+-.+|.-+
T Consensus 415 ~G-iE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 415 NG-IEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred cc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 55 77787877778877777766666655
No 20
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.4e-14 Score=134.31 Aligned_cols=378 Identities=18% Similarity=0.124 Sum_probs=279.8
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009622 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165 (530)
Q Consensus 86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 165 (530)
.......|+..|.+++.. ...-..|...+++..|++.|+.++ .++.......|..++- ..+++..+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHH
Confidence 344555677888888754 344557788899999999999988 7888889999999888 678888899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchH
Q 009622 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245 (530)
Q Consensus 166 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l 245 (530)
+++...+++++...+..+.|++.++. .|...+..|.+|.+..++..+.. ...|+..++.++.++..........++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999998876 78888899999999999943332 334667778888877666666678899
Q ss_pred HHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHH
Q 009622 246 PALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (530)
Q Consensus 246 ~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 323 (530)
+.+.+.+-+ .+.++-...+..-.|++-+. .+.+.+++...+..|++. ++..+. + ....+.|++.+.......+
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniSqHeg~tqn~F 502 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNISQHEGATQNMF 502 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch-H---HHHHHHHhhhccchHHHHH
Confidence 988776543 45555444444445665433 234555665667777665 333332 2 3455677776555343344
Q ss_pred hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCC
Q 009622 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 401 (530)
++ .+.-|...+....+...-.++..+++|+...+-+-.+.+-+.+++|.+-..|..+ ..++....+.+++.++.
T Consensus 503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-- 578 (791)
T KOG1222|consen 503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-- 578 (791)
T ss_pred HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--
Confidence 43 3556666676664677888999999999886666666666788999999988876 46788888889998888
Q ss_pred CHHHHHHHHHcCChHHHHhccC--CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCC
Q 009622 402 THEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479 (530)
Q Consensus 402 ~~~~~~~l~~~~~l~~L~~lL~--~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 479 (530)
+......+...++++.|+++|+ ..|.+++...+..+..++.+... -.-++.+...-..+-.|++..|
T Consensus 579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-----------r~~miket~~~AylIDLMHDkN 647 (791)
T KOG1222|consen 579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-----------RRLMIKETALGAYLIDLMHDKN 647 (791)
T ss_pred hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-----------HHHHHhhccchHHHHHHHhccc
Confidence 3355566668899999999997 45777877888888888877433 2455667777788999999999
Q ss_pred HHHHHHHHHHHH
Q 009622 480 AEIYEKSVKLLE 491 (530)
Q Consensus 480 ~~v~~~a~~il~ 491 (530)
.+|++-+...++
T Consensus 648 ~eiRkVCDn~Ld 659 (791)
T KOG1222|consen 648 AEIRKVCDNALD 659 (791)
T ss_pred HHHHHHHHHHHH
Confidence 998776655444
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.8e-13 Score=126.39 Aligned_cols=361 Identities=15% Similarity=0.144 Sum_probs=277.2
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.+.-+++.|..++.+........|.++.-. .++...|.+.|++..|++++...+ ++++...+..+.|++. +...+
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr 379 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR 379 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence 4677888889888888887777777777443 567778889999999999999988 9999999999999999 67788
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..++..|.+|.+..+|.+.. -...|+..+..++.+.. .+..+....+++.+++.+....+..+-...+....|||.+
T Consensus 380 ~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred HHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 89999999999999997643 33457778888877765 7888888999999999887777888878888888899998
Q ss_pred CCCCChhhhhchHHHHHHh-hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHh
Q 009622 233 KPQPPFDQVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG 310 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~l-l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~ 310 (530)
..+.........+..|... +++.|.-+ ...+.+++.+.......++ +.+..|...++.. ++.....++.+++
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtla 530 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFI--DYVGDLAGIAKNDNSESFGLECLGTLA 530 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHh
Confidence 8777766666667666543 44445433 2356677766543333344 3556677766654 4567888999999
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHH
Q 009622 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIK 387 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 387 (530)
|+.-..-...+.+-..+++|++-..|..+- ..++.-...-.++.++.. ......+..+++++.|+++|+.. |.+..
T Consensus 531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV 609 (791)
T KOG1222|consen 531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFV 609 (791)
T ss_pred hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence 998766677766778899999999998653 345667777777777654 35556667889999999999765 67788
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 009622 388 KEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 449 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~ 449 (530)
...++++..+..+ .-.++.++. ...-..|++++.+.+.+++..|-.+|..+..+.+.+..
T Consensus 610 ~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK 670 (791)
T KOG1222|consen 610 VQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK 670 (791)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8889999998886 344556664 45566799999999999999999999988877766543
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.66 E-value=1.4e-13 Score=127.52 Aligned_cols=401 Identities=12% Similarity=0.073 Sum_probs=292.2
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC---C---CHHHHHHHHHHHHHHhc
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE---D---YPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~---~---~~~i~~~a~~~L~~l~~ 146 (530)
+.++.+.+...|++.++-.+.+++|.+++..+ ++.+..+.+.|+-..+++.|+.- + +.+.-.-+...|.|...
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45677777788888999999999999998775 77888888999888888877642 2 23555667778999999
Q ss_pred CChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH
Q 009622 147 GTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (530)
Q Consensus 147 ~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~ 223 (530)
++.+.+..+.+.|+++.|...+.- .+.+..+.++....|+.+- ++...+...+......+++++....++.+...+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999888754 6677778787777777642 2223445566677788888887777888999999
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhcC-CC----h---hHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhh
Q 009622 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHS-ND----D---EVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFL 294 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~-~d----~---~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~lL 294 (530)
..+...+.++.-.-.....|.+..+..+++. .+ . .....++....-+..++++ .+.+...+ +++.+.+.+
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence 9999999887555555667888888888764 21 1 1222333334444444444 45555555 899999999
Q ss_pred CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009622 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQAVIEAN 370 (530)
Q Consensus 295 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (530)
.+.+......+..++||+++.++ ....+++.+++..|+.++.... +-+++..++.+|.|++--- .....++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhccccc
Confidence 99999999999999999998555 4457888999999999996521 5577889999999998632 3445678899
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhccCCCChH-HHHHHHHHHHHHHhhhhhhh
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPDPR-IVTVCLEGLENILKVGEAEK 448 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~-v~~~al~~l~~ll~~~~~~~ 448 (530)
+.+.++..++...|.|...-+..+.-+..+. +.....+. ....++.|++--+++|.. +.--....+.-++++.-..
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k- 480 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK- 480 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh-
Confidence 9999999999999999888888887776642 11222333 224566777766776654 5555566666666654221
Q ss_pred hcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009622 449 NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487 (530)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~ 487 (530)
.+.-.+...||++....+....+-.++..|.
T Consensus 481 --------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEal 511 (604)
T KOG4500|consen 481 --------DVILTVPKSGGIKEKVSMFTKNHINMQNEAL 511 (604)
T ss_pred --------hhHhhccccccHHHHHHHHHHhhHHHhHHHH
Confidence 1345567788988888887777777766554
No 23
>PRK09687 putative lyase; Provisional
Probab=99.66 E-value=2.1e-14 Score=133.79 Aligned_cols=255 Identities=14% Similarity=0.133 Sum_probs=201.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
-++.|..+|.+.+ ..++..|+++|..+.. ..+++.+..++.++++.+|..++|+|+.|-.... .
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C--- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence 4778999999888 8999999999988764 2345778888899999999999999999853221 1
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
....++.|..++..+++..++..++.+|.+++...... ...+++.+...+.+++..|+..++++|+.+.. +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11256677777558889999999999999997654222 23356667777888899999999999987642 1
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 277 ~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
..++.|+.+|.++++.++..|+.+||.+..+++ .+++.|+..|.+. ++.||..|.|+|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 356889999999999999999999999943332 3567899999988 9999999999999973
Q ss_pred cCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHH
Q 009622 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLE 435 (530)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~ 435 (530)
. + ..+|.|++.+.+++ ++..++.+|+++-.. ..++.|..+++ .+|+.++..+.+
T Consensus 221 ~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 221 D--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK------------TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred C--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH------------hHHHHHHHHHhhCCChhHHHHHHH
Confidence 2 2 37899999998765 778899999988662 25888889886 789999999988
Q ss_pred HHHH
Q 009622 436 GLEN 439 (530)
Q Consensus 436 ~l~~ 439 (530)
++..
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 8753
No 24
>PRK09687 putative lyase; Provisional
Probab=99.65 E-value=5.6e-14 Score=130.92 Aligned_cols=254 Identities=15% Similarity=0.099 Sum_probs=199.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.++.|...|.+++..++..|+..|..+-. ..+++.+..++.+++ +.+|..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 56788999999999999999999997742 235777888888888 99999999999998752211
Q ss_pred HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 154 VVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 154 ~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
...+++.|..+ +.++++.++..++.+|++++...... ...++..+...+ .+.+..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11246777766 57788999999999999996443311 111345555666 67789999999999976542
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
...++.|+.++.++++.|+..++.+|+.+....+ .+++.|+..|.+.++.++..|++.|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3578999999999999999999999999843333 3457788899999999999999999986
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchhHHHHHH
Q 009622 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAA 391 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~ 391 (530)
-. ..+++.|+..|.++ + ++..++.+|+++.. + ..+|.|..++. .+|.+++..|.
T Consensus 220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence 43 24689999999976 4 78889999999854 2 26889999997 67999999999
Q ss_pred HHHHH
Q 009622 392 WAISN 396 (530)
Q Consensus 392 ~aL~n 396 (530)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 98853
No 25
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.2e-13 Score=121.42 Aligned_cols=311 Identities=12% Similarity=0.132 Sum_probs=247.1
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009622 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV 161 (530)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i 161 (530)
.+++...-+.++.+|..+.... | .+.+...+..++.+|... ++.++....+.++..-|..+..+++.+++.+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q--p---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ--P---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC--c---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 3566667777777777665432 2 234556688888888643 246788888888988888899999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHhhhCCCc---------hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622 162 PIFVKLLYS-PSDDVREQAVWALGNIAGDSP---------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 162 ~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~---------~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+.+.+.|.. ....+.+...|++.-+..+++ .....+...|++..|+..+....++.+...++.+|..|+-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999988765 334677789999999987654 2345667778899999999777789999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCC-Chh---HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHH
Q 009622 232 GKPQPPFDQVSPALPALAHLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPA 305 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a 305 (530)
.+.........|.+..|+.++.+. +.. ....++..|..++.. ++....+++.|+.+.++.++.. .++.+...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 776666677789999999999874 333 445677788887754 4556778999999999988643 578899999
Q ss_pred HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 306 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
+.+++-++-..++....+++.|+-...+..|+..+ ...++++|||.+.|++..+.++...++.. .++.|+......++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 99999999999999999999999999999887543 56899999999999999888888777764 56788888888888
Q ss_pred hHHHHHHHHHHHhhcC
Q 009622 385 DIKKEAAWAISNATSG 400 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~ 400 (530)
.....|..||..+-..
T Consensus 430 tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGCD 445 (461)
T ss_pred cHHHHHHHHHHhcCcc
Confidence 8888888888887653
No 26
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.60 E-value=1.6e-12 Score=127.09 Aligned_cols=405 Identities=16% Similarity=0.085 Sum_probs=273.6
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
.++..+...+|+....|..-..+++.+. .++-..+++.|.++.++.++...+ .++.+.+.+.++.....+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 4455666778888888999999998876 555557899999999999998765 46777778888888888888889999
Q ss_pred HhCCChHHHHHhhCCCC-HHHHHHHHHHHHhhhCCCchhhhhHh---hcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622 156 IDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVL---SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 156 ~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~---~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.+.+.++.|+++|.+++ ..+++.++.++.++...++. .+... ...++..+..++ ..+.......-+...+++|.
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~-q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~ 169 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY-QDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSS 169 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc-cccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccc
Confidence 99999999999999988 78999999999999876642 22221 222344444444 32445555566666666776
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH---HhccCChHHH----HHHHHhCcHH--HHHHhhCCCCchhH
Q 009622 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS---YLSDGTNDKI----QAVIEAGVFP--RLAEFLMHPSPSVL 302 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~---~l~~~~~~~~----~~~~~~~~i~--~L~~lL~~~~~~~~ 302 (530)
...........++...+.-++.......+..++.+++ .+..+++... ....+.|+.+ .+..++++++...+
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~ 249 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER 249 (678)
T ss_pred cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence 6544445556777777777777777888889999998 6665554332 2233445555 34455555555555
Q ss_pred HHHHHHHhHhhcCCc-------------hhhHHH--------------------------------------hhcCchHH
Q 009622 303 IPALRTVGNIVTGDD-------------MQTQCV--------------------------------------IEYQALPC 331 (530)
Q Consensus 303 ~~a~~~L~nl~~~~~-------------~~~~~~--------------------------------------~~~~~l~~ 331 (530)
..++.++-++..++. .....+ .+...++.
T Consensus 250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~ 329 (678)
T KOG1293|consen 250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT 329 (678)
T ss_pred HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence 555555555543330 000000 00000111
Q ss_pred HHHhh----------------------------------------------------cCCCchhHHHHHHHHHHHHhcCC
Q 009622 332 LLNLL----------------------------------------------------SGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 332 L~~lL----------------------------------------------------~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
+.+++ ... +..++..||-++-+++..-
T Consensus 330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV 408 (678)
T KOG1293|consen 330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSV 408 (678)
T ss_pred HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHH
Confidence 11111 011 3344445555555554321
Q ss_pred HHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009622 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 439 (530)
Q Consensus 360 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ 439 (530)
..-...+-...+..+|+.++..++..|+..++.+|+|++..-+ .....++..|+++.+..++...++.++..++|+|++
T Consensus 409 ~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~ 487 (678)
T KOG1293|consen 409 SALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRH 487 (678)
T ss_pred HHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 1111122245688999999999999999999999999998644 456778999999999999999999999999999999
Q ss_pred HHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009622 440 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 440 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
++-.+.... ...+-.-=+...|..+.++++..|++.+.+++..+..+
T Consensus 488 l~f~~de~~----------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 488 LMFNCDEEE----------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHhcchHHH----------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 975543321 11222122356788899999999999999999988665
No 27
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.60 E-value=6.2e-14 Score=146.39 Aligned_cols=269 Identities=19% Similarity=0.151 Sum_probs=223.6
Q ss_pred HHH-HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-----------CHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009622 89 VQY-ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVI 156 (530)
Q Consensus 89 ~~~-~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-----------~~~i~~~a~~~L~~l~~~~~~~~~~~~ 156 (530)
.++ .|+..|.++.-+ .+..+.|.+.|+++.+-+|+.-.. +-.++..|..+|+||+.++..++..+.
T Consensus 313 H~lcaA~~~lMK~SFD--EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFD--EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred hhhHHHHHHHHHhhcc--HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 344 677777776433 678888999999998888775321 246899999999999999988888877
Q ss_pred h-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-
Q 009622 157 D-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK- 233 (530)
Q Consensus 157 ~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~- 233 (530)
. .|++..++..|.+...++.+..+.+|.||+-. +...+..+.+.|-+..|+.+......+..++.++.+||||+-+.
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 5 59999999999998889999999999999943 23356777788989999888767778888999999999999877
Q ss_pred -CCCChhhhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhc---cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009622 234 -PQPPFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLS---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (530)
Q Consensus 234 -~~~~~~~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a 305 (530)
....+-.+.|++..|+.+|... .-.|++.+-.+|.|++ ...+...+.+.+...+..|++.|++.+..+..++
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 3334555789999999998643 3567778777777765 3456677889999999999999999999999999
Q ss_pred HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009622 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (530)
Q Consensus 306 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (530)
|.+|+||+..+++..+.+.+.|+++.|..++++. +..+-.-++.+|.|+....+
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999998 89999999999999987543
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.3e-14 Score=136.85 Aligned_cols=340 Identities=17% Similarity=0.188 Sum_probs=221.5
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHH-HH---HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-VI---RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~~---~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~ 148 (530)
+.+|.+.++|.+++...+.-|..+|.++...+ .+..+. +. -.-.+|.++++.++++ |.+|..|+.|+..+.-..
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence 46788888888999888888999999987442 111110 00 0236899999999998 999999999998877644
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
+.....-++ .+++.+..+-.+.++++|.+.+.+|..+....+. +-.-.-.++++.++... ++.|+++.-.||..+..
T Consensus 206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~t-qd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLA 282 (885)
T ss_pred cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence 433322222 3566777777779999999999999999865543 11111124566666666 77888999999999999
Q ss_pred hccCCCCCC--hhhhhchHHHHHHhhcCCChhH--HH-------------------------------------------
Q 009622 229 FCRGKPQPP--FDQVSPALPALAHLIHSNDDEV--LT------------------------------------------- 261 (530)
Q Consensus 229 L~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v--~~------------------------------------------- 261 (530)
++..+-... ......++|.|+.-+.-.+.++ ..
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 999862111 2334666777765443211110 00
Q ss_pred ---HHHHHHHHhccCChHHHHHHHHhCc----HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622 262 ---DACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (530)
Q Consensus 262 ---~a~~~l~~l~~~~~~~~~~~~~~~~----i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (530)
..-|-|...+...-+....+....+ +|.|-+.|.+++|.+++.++.++|.|+.|+-...-.- -..++|.|+.
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-LpeLip~l~~ 441 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH-LPELIPFLLS 441 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc-hHHHHHHHHH
Confidence 0012222222211111222333344 4555555677899999999999999998875332111 1247899999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009622 335 LLSGNYKKSIKKEACWTVSNITAG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 412 (530)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 412 (530)
+|.+. .+-||.-+||+|+..+.. ..+ .+..+. .++..|++.+-+++.+|++.|+.|+..+-..+..+...++-
T Consensus 442 ~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~-- 516 (885)
T KOG2023|consen 442 LLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLE-- 516 (885)
T ss_pred HhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHH--
Confidence 99998 999999999999999762 111 212221 35666667677788999999999999999877766665542
Q ss_pred CChHHHHhccC
Q 009622 413 GCIKPLCDLLV 423 (530)
Q Consensus 413 ~~l~~L~~lL~ 423 (530)
.++..|+..+.
T Consensus 517 ~IL~~l~~af~ 527 (885)
T KOG2023|consen 517 YILDQLVFAFG 527 (885)
T ss_pred HHHHHHHHHHH
Confidence 24444544443
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.59 E-value=5e-13 Score=121.57 Aligned_cols=237 Identities=19% Similarity=0.212 Sum_probs=185.8
Q ss_pred hhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622 241 VSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 241 ~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 319 (530)
..+-++.|+.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+.+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 35667889999985 58999999999999987655 45577888999999999999999999999999999998765544
Q ss_pred hHHHhhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622 320 TQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
. .++. .++.+.+...+ +.+..++..+..+|.|++..+.. +.++ .+.++.++.++..++..+|..++++|.||+
T Consensus 89 ~--~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 89 E--QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred H--HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3 2333 35555554433 33778999999999999865322 2333 247999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhhhhhhhhcC---CCCchhhHHHhhhhc-cHHHHHH
Q 009622 399 SGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLG---NTDVNVFTQMIDDAE-GLEKIES 473 (530)
Q Consensus 399 ~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~l~~ 473 (530)
. ++...+.++..+++..++.+++.+ +.++...++..+.+|.....+..... .-...++...|.+.+ .-++|..
T Consensus 163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 9 678899999999999999999876 66788889999999965544331111 113445567777777 7788999
Q ss_pred HhcCCCHHHHHHH
Q 009622 474 LQTHDNAEIYEKS 486 (530)
Q Consensus 474 l~~~~~~~v~~~a 486 (530)
|..|++++|+.+.
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 9999999998764
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=4.1e-12 Score=132.07 Aligned_cols=395 Identities=16% Similarity=0.157 Sum_probs=271.5
Q ss_pred CHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh-
Q 009622 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH- 151 (530)
Q Consensus 74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~- 151 (530)
.++.|...+. +.|++++..|+..+|+++... -+.+..=.+..+-..|+..+.+...+.++...+.++..++...-+.
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~ 115 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEK 115 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccc
Confidence 4566666666 588999999999999998762 2222222334455566776666655899999999999999854222
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
. .++++.|.+..+++++..|+.|+.+|..+...-.. .+..+. .+.+.+.+.+ .+++..++..++.++..++
T Consensus 116 W-----Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~-~d~s~~vr~~a~rA~~a~~ 187 (1075)
T KOG2171|consen 116 W-----PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTM-TDPSSPVRVAAVRALGAFA 187 (1075)
T ss_pred h-----HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhc-cCCcchHHHHHHHHHHHHH
Confidence 2 25678899999999999999999999999754332 111111 1333444455 4444449999999999888
Q ss_pred cCCC--CCChhhhhchHHHHHHh----hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhH
Q 009622 231 RGKP--QPPFDQVSPALPALAHL----IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVL 302 (530)
Q Consensus 231 ~~~~--~~~~~~~~~~l~~L~~l----l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~ 302 (530)
...+ ..........+|.++.. +..+|.+....++.+|..++...+......+. .++...+.+..+. +..+|
T Consensus 188 ~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R 266 (1075)
T KOG2171|consen 188 EYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIR 266 (1075)
T ss_pred HHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHH
Confidence 7764 22233445666655544 44567777778888888887776655444433 3445555555443 45566
Q ss_pred HHHHHHHhHhhcCCchhh---------------------------------------------HHHh------------h
Q 009622 303 IPALRTVGNIVTGDDMQT---------------------------------------------QCVI------------E 325 (530)
Q Consensus 303 ~~a~~~L~nl~~~~~~~~---------------------------------------------~~~~------------~ 325 (530)
..|+.+|..++.+.+... ...+ -
T Consensus 267 ~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~ 346 (1075)
T KOG2171|consen 267 HLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL 346 (1075)
T ss_pred HHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh
Confidence 666666655543311000 0000 0
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009622 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405 (530)
Q Consensus 326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~ 405 (530)
.-+++.+..++.+. +..-|+.+..+|+-++.|+.+.+...++ .+++.++..+.+++++||..|+.|++.++..-.++.
T Consensus 347 p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 347 PPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 12355666777888 9999999999999999999988877555 689999999999999999999999999999766554
Q ss_pred HHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHH
Q 009622 406 IKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE 484 (530)
Q Consensus 406 ~~~l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~ 484 (530)
.++ ....+++.|+..+++. ++++...+..++.+++..+.+.. ..+|...+.+. ++..|..+..+.+++
T Consensus 425 qk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~------l~pYLd~lm~~----~l~~L~~~~~~~v~e 493 (1075)
T KOG2171|consen 425 QKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI------LEPYLDGLMEK----KLLLLLQSSKPYVQE 493 (1075)
T ss_pred HHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH------HHHHHHHHHHH----HHHHHhcCCchhHHH
Confidence 444 5557788888888765 56899999999999998776643 44566655422 677788888888887
Q ss_pred HHHHHHH
Q 009622 485 KSVKLLE 491 (530)
Q Consensus 485 ~a~~il~ 491 (530)
.+...|-
T Consensus 494 ~vvtaIa 500 (1075)
T KOG2171|consen 494 QAVTAIA 500 (1075)
T ss_pred HHHHHHH
Confidence 7766554
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.57 E-value=2.1e-12 Score=140.69 Aligned_cols=275 Identities=18% Similarity=0.205 Sum_probs=218.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.|+..|.++++.++..|+..|..+.. .+.++.|+..|.+++ +.++..|+.+|..+....+
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence 356888899999999999999999997642 236888999998887 9999999999988854211
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+.|...|.++++.++..++.+|+.+.... ...++..+ .+++..++..++.+|..+-.
T Consensus 685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence 2356778888899999999999999874221 23466777 88899999999999987621
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
.+.|..++.++++.|+..++.+|+.+..... ..++.|..++.++++.++..|+.+|+.+
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1346778889999999999999998865422 2367788999999999999999999998
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009622 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 392 (530)
.... .+.+.+...|.++ ++.||..|+++|+.+... ..++.|+.++.+++..||..|++
T Consensus 803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHH
Confidence 5421 1235678888888 999999999999987432 25689999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009622 393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE 438 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~ 438 (530)
+|..+. +++. ..+.|...+++.|+.|+..+..+|.
T Consensus 861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999972 2332 3667778899999999999998875
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=1e-12 Score=119.57 Aligned_cols=196 Identities=18% Similarity=0.233 Sum_probs=163.4
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009622 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 192 (530)
.+.+-++.|+.+|+...+|.++..|+.++++.+. .+..++.+.+.|+++.+..+|..+++.+++.|+++|.|++.+.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 4456689999999977669999999999999877 78899999999999999999999999999999999999988766
Q ss_pred hhhhHhhcCChHHHHHhhcCC-CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622 193 CRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 193 ~~~~i~~~~~i~~Ll~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
.+..+-. .++.+++.+... -+..++..++.+|.+|+..... .......+|.++.++.+++..++..++++|.+++
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4444432 466777765333 4788999999999999876433 2334668999999999999999999999999999
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcC
Q 009622 272 DGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~ 315 (530)
.++. ....++..+++..++.++... +..+...++..+.||..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 8765 456688889999999999886 577899999999999754
No 33
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.6e-12 Score=122.53 Aligned_cols=346 Identities=13% Similarity=0.156 Sum_probs=232.3
Q ss_pred hhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh---
Q 009622 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--- 157 (530)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--- 157 (530)
.+...++-++-..-..+..+++..+-..+ ..++|.|+++|.+++ ...++-|..+|..++.++.+..+.-+.
T Consensus 98 ~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rp 171 (885)
T KOG2023|consen 98 GLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRP 171 (885)
T ss_pred hccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCc
Confidence 34444444443333444445444333333 346999999999988 788999999999999987665554221
Q ss_pred -CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC
Q 009622 158 -HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236 (530)
Q Consensus 158 -~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 236 (530)
.-.+|.++++.+++++.+|..|+.++..+.-..+..-..-+ ..++..+..+. .+.++++++++|.++..|....+..
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHh
Confidence 13589999999999999999999999887755442111111 12455566655 8889999999999999999988877
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh--HHHHHHHHhCcHHHHHHhhCCC-----------------
Q 009622 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAGVFPRLAEFLMHP----------------- 297 (530)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~i~~L~~lL~~~----------------- 297 (530)
-.....++++.++...++.|++|.-.||.....++..+. +.....+. .++|.|+.-+..+
T Consensus 250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~-kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD-KLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH-HHHHHHHccCccccccHHHhcCccccccCC
Confidence 777889999999999999999999999999888887652 11121121 4455554433211
Q ss_pred ---------------------------------------CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC
Q 009622 298 ---------------------------------------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338 (530)
Q Consensus 298 ---------------------------------------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 338 (530)
+|.+|..+..+|.-++.--.+ .++ .-++|.|-..|.+
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL-~~l~PlLk~~L~~ 404 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELL-PILLPLLKEHLSS 404 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH---HHH-HHHHHHHHHHcCc
Confidence 134454444444444321111 111 1245555555666
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHH
Q 009622 339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI-KFLVIQGCIKP 417 (530)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~~l~~ 417 (530)
+ +..+|+.+..+++.++.|.-...-.-+ ..++|.|+.+|.+..+-||.-.||+|+..+.....+.. +++. .++..
T Consensus 405 ~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ 480 (885)
T KOG2023|consen 405 E-EWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEG 480 (885)
T ss_pred c-hhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHH
Confidence 6 889999999999999986533221111 13789999999999999999999999988763321111 2221 24556
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHhh
Q 009622 418 LCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 418 L~~lL~~~~~~v~~~al~~l~~ll~~ 443 (530)
|...+-+++.+|++.|+.++..+-+.
T Consensus 481 ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 481 LLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 66666678899999999998877543
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.50 E-value=1.5e-11 Score=133.98 Aligned_cols=277 Identities=18% Similarity=0.209 Sum_probs=218.8
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009622 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (530)
Q Consensus 114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 193 (530)
....++.|+..|.+++ +.+|..|+..|+.+.. .++++.|...|.++++.++..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 3456789999999888 9999999999998753 2457889999999999999999999998853222
Q ss_pred hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009622 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
..+.+...| .+.++.++..++.+|..+.... ...++..|.++|+.++..++.+|+.+..
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 124566777 6789999999999998865321 2356778899999999999999987621
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 274 ~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
.+.|..++.++++.+|..++.+|+.+..... ..++.|..++.++ ++.+|..|+.+|+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg 800 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA 800 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 1336678999999999999999998865322 2367888999988 9999999999999
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009622 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 433 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~a 433 (530)
++.... .+++.++..+.++++.||..|+++|..+-.. ..++.|..+|++++..|+..+
T Consensus 801 ~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 801 ELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred hcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHH
Confidence 985431 1335678889999999999999999987432 256899999999999999999
Q ss_pred HHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009622 434 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491 (530)
Q Consensus 434 l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~ 491 (530)
+.+|..+ ...+ .....|....++++.+|+..|...|+
T Consensus 859 ~~aL~~~-~~~~--------------------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 859 VLALTRW-PGDP--------------------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhcc-CCCH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999875 1111 12467778888999999999988875
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.49 E-value=2.4e-10 Score=119.28 Aligned_cols=262 Identities=14% Similarity=0.093 Sum_probs=189.2
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.+++.+.++|.+++....-.+.+++.. .+..-.+ ++..|.+=+.+++ |.+|..|+++++++-. ++..
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~ 138 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL 138 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence 3678899999999999999988888888654 2322222 3677888888888 9999999999998876 4444
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+ ++.+.+.+.+.++-+|..|+.++.++....++ .+...+.++.|.+++ .+.++.+..+|+.+|..++..
T Consensus 139 e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 EYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence 433 56788889999999999999999999766653 344567888899988 889999999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
.+. ........+..|+..+...++..+..++.+|....-.++... ..++..+...|++.++.+...|++++.++
T Consensus 210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 543 234455666667777777788888888888866432222211 25778888999999999999999999998
Q ss_pred hcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009622 313 VTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 313 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (530)
....+ .....+. ..+-+.++.++ ++ ++.++..+...|.-++...+.
T Consensus 284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~ 330 (746)
T PTZ00429 284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPN 330 (746)
T ss_pred cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHH
Confidence 76432 2111111 12234455553 44 677888877777666654443
No 36
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.49 E-value=1.6e-11 Score=120.29 Aligned_cols=370 Identities=14% Similarity=0.098 Sum_probs=241.6
Q ss_pred hcCCHHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009622 71 KLENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 71 ~~~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~ 148 (530)
+.++++.++..++.+++ +.+...+..+....+++ ......+.+.+.++.|.+++++++...+....++++..+...+
T Consensus 49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~ 127 (678)
T KOG1293|consen 49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS 127 (678)
T ss_pred hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence 45789999999987664 45555666677777765 6778889999999999999998875688999999999999855
Q ss_pred hhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009622 149 SEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (530)
Q Consensus 149 ~~~~~~~~--~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L 226 (530)
+..-..+. ...+++.+..++..+.......-+....++++.. ..+..+...|+.+.+.-++ .......+..++.++
T Consensus 128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~ 205 (678)
T KOG1293|consen 128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL-MYLSSKLRLAALLCL 205 (678)
T ss_pred cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH-HhhhHHHHHHHHHHh
Confidence 33322222 2345555555555233444444444455554443 4555566666666655555 556778888888888
Q ss_pred h---hhccCCCCCChhh-----hhchHH--HHHHhhcCCChhHHHHHHHHHHHhccCCh----------------HHH--
Q 009622 227 S---NFCRGKPQPPFDQ-----VSPALP--ALAHLIHSNDDEVLTDACWALSYLSDGTN----------------DKI-- 278 (530)
Q Consensus 227 ~---~L~~~~~~~~~~~-----~~~~l~--~L~~ll~~~d~~v~~~a~~~l~~l~~~~~----------------~~~-- 278 (530)
+ ++..+++...... ..++.+ .+.+++++++...+..++.++.++...+. +.+
T Consensus 206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q 285 (678)
T KOG1293|consen 206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQ 285 (678)
T ss_pred hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHH
Confidence 8 6666554332211 133333 23344444444444444444433332210 000
Q ss_pred ---------------------------------HHHHHhCcHHHHHHhh-------------------------------
Q 009622 279 ---------------------------------QAVIEAGVFPRLAEFL------------------------------- 294 (530)
Q Consensus 279 ---------------------------------~~~~~~~~i~~L~~lL------------------------------- 294 (530)
....+...++.+.+++
T Consensus 286 ~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~ 365 (678)
T KOG1293|consen 286 YNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGL 365 (678)
T ss_pred HhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhc
Confidence 0000001111111111
Q ss_pred ---------------------CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622 295 ---------------------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 295 ---------------------~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
-..+...+..||.++-+++..-......+-...+...|++++..+ +..|+..+..+|+
T Consensus 366 ~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~ 444 (678)
T KOG1293|consen 366 EISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAIC 444 (678)
T ss_pred chhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHH
Confidence 112334555566666555543332222223456888999999888 8999999999999
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009622 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 433 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~a 433 (530)
|+.-...+....++..|+|..+..++.+.++.+|..+.|+|.++..+++.+....+...-....+..+.++++..|++.+
T Consensus 445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQC 524 (678)
T ss_pred HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence 99987667778899999999999999999999999999999999998776665555555556677888899999999999
Q ss_pred HHHHHHHHhhh
Q 009622 434 LEGLENILKVG 444 (530)
Q Consensus 434 l~~l~~ll~~~ 444 (530)
+..++|+....
T Consensus 525 fqllRNl~c~~ 535 (678)
T KOG1293|consen 525 FQLLRNLTCNS 535 (678)
T ss_pred HHHHHHhhcCc
Confidence 99999998653
No 37
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.47 E-value=1.3e-12 Score=106.88 Aligned_cols=119 Identities=35% Similarity=0.611 Sum_probs=110.3
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC
Q 009622 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (530)
Q Consensus 111 ~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 190 (530)
.+++.|+++.+++++.+++ +.++..++++|.+++..+++....+++.|+++.++.++.++++.++..++|+|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3567899999999999888 899999999999999988999999999999999999999999999999999999999988
Q ss_pred chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 191 ~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+..+...|+++.+++++ .+.+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77788888899999999999 66789999999999999874
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.46 E-value=1.8e-12 Score=106.08 Aligned_cols=118 Identities=34% Similarity=0.505 Sum_probs=110.3
Q ss_pred HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009622 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (530)
Q Consensus 281 ~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (530)
+++.|+++.+++++.+.++.++..+++++++++...+.....+++.|+++.+.+++.++ ++.++..++|+|+|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998888888888999999999999998 99999999999999999887
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.....+.+.|+++.|++++.+.+.+++..++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999999999999999999999863
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.45 E-value=9.5e-10 Score=114.89 Aligned_cols=294 Identities=16% Similarity=0.100 Sum_probs=208.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.+..+.+.|.+.+...+..|++.+......+ .+.. .+.+.+++++.+.+ ..++.-....+.+++...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 35677788888888888888888777665543 2222 24677788888888 8999999999999988666643
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
-. +++.|.+=+.++++.+|-.|++++++|-.. ..-+. .+.++.+.+ .+.++.+++.|+.++..+...
T Consensus 104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 22 367888889999999999999999998421 12111 466677777 788999999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
.+. .....+.++.|..++.+.|+.|+.+|+.+|..+....+.... ...+.+..++..+...++..+...+.+|...
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 543 223456788899999999999999999999999765543332 2345677788888777777777777777553
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHH
Q 009622 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAA 391 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 391 (530)
...++... ..++..+...|++. ++.|.-+|+.++.++... +++....+.. .+-+.|+.+ .++++++|.-++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHH
Confidence 32222111 35677888889998 899999999999998754 2333222221 233455555 345567777777
Q ss_pred HHHHHhhc
Q 009622 392 WAISNATS 399 (530)
Q Consensus 392 ~aL~nl~~ 399 (530)
..|.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 66655554
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.44 E-value=1.3e-11 Score=128.49 Aligned_cols=328 Identities=19% Similarity=0.192 Sum_probs=235.4
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
...+.+++.+.+++...+..+--.+..+... ++..-.+ ++..+.+=+.+++ +.++..|++++++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 4788999999999999998888888877654 2332222 4667777788888 9999999999999985 6665
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+ ++.+.+++.++++.+|..|+.++..+....|.. +... .++.+.+++ .+.++.++.+|+.++..+ ..
T Consensus 113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 544 688999999999999999999999998665542 2222 578888888 888899999999999999 22
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
.+..........+..|..++...++..+..++..+..++......... ..+++.+..++.+.++.+...++.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 111101344556666777777889999999999999988766544311 35678888888888888999999998877
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchhHHHHHH
Q 009622 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAA 391 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~ 391 (530)
..... .-..+++.|..++.++ ++.+|..++..|..++...+..+. ... ..+..+. +++..+|..++
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~-~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQS-LILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THH-HHHHHHHCSSSHHHHHHHH
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhh-hhhheecCCCChhHHHHHH
Confidence 65333 2345678899999977 888999999999999876533322 122 2233444 67888999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHcCChHHHHhcc-CCCChHHHHHHHHHHHHHHhhh
Q 009622 392 WAISNATSGGTHEQIKFLVIQGCIKPLCDLL-VCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 392 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-~~~~~~v~~~al~~l~~ll~~~ 444 (530)
..|.+++.. ..... +++.|...+ +..+++++..++..+..+....
T Consensus 326 ~lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 326 DLLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 988888863 33332 466666767 4447777777777777665443
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.43 E-value=2.4e-10 Score=110.76 Aligned_cols=322 Identities=13% Similarity=0.159 Sum_probs=229.4
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhc-----CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622 160 AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 160 ~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-----~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
.+..++.+++. ...++.+.++..+..+..+.+.....+.+. ....+++.++ ..+|.-+...++.+++.+....
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhcC
Confidence 45666777765 667888889999998888877555555443 4677888888 6778899999999999998765
Q ss_pred CCCCh-hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHH
Q 009622 234 PQPPF-DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV 309 (530)
Q Consensus 234 ~~~~~-~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L 309 (530)
+.... ......++.+...+.+. +...+.-++.++..+...+..+ ..+.+.++++.|+++|+.. +..++..++.++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 33221 12222444555666554 4566667778888888776654 5677888999999999764 457889999999
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC------HHHHHHHHHhCcHHHHHHHHhcC-
Q 009622 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN------REQIQAVIEANIIGPLVALLENA- 382 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~i~~L~~ll~~~- 382 (530)
+-++...+ ........++++.+..+++......+-+-+..++.|+...+ ......+++.|+++.+-.+....
T Consensus 212 WlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 98886444 44455577999999999998767889999999999998732 22344566777766544444332
Q ss_pred -chhHHHHHHHHH-------HHhhc------------------CC----CHHHHHHHHHcC--ChHHHHhccC-CCChHH
Q 009622 383 -EFDIKKEAAWAI-------SNATS------------------GG----THEQIKFLVIQG--CIKPLCDLLV-CPDPRI 429 (530)
Q Consensus 383 -~~~v~~~a~~aL-------~nl~~------------------~~----~~~~~~~l~~~~--~l~~L~~lL~-~~~~~v 429 (530)
|+++....-..- ..++. +. -.+....+.+.+ ++..|+++|+ +.|+.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 555443322111 11110 00 134555566554 4788999994 678888
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
+..|+.=++.+++..+. .+..++..|+-+.+.+|++|+|++|+..|...++++..
T Consensus 371 laVAc~Dige~vr~~P~-----------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 371 LAVACHDIGEYVRHYPR-----------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eehhhhhHHHHHHHCcc-----------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88999999999988765 36778899999999999999999999999999998754
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.43 E-value=1.8e-10 Score=120.00 Aligned_cols=326 Identities=20% Similarity=0.226 Sum_probs=237.4
Q ss_pred HHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009622 77 VMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 77 ~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
++.+.+.+. +...+..++..+..+...+ .+ . +.+.+.+++++.+.+ ...+.-+.-++..+...+++....
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~-~-----~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YD-I-----SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CC-C-----chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence 334444444 6777777877777665543 21 1 246888899999777 899999999999999877763333
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
++..+.+-|.++++.++..|+.++++++ .++.... .++.+.+++ .++++.+++.|+.++..+....|
T Consensus 80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 3677888899999999999999999996 3322222 577788888 78889999999999999998754
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~ 314 (530)
... ... .++.+..++.+.|+.++..|+.++..+ ...+.....+ -..++..|..++...++..+..+++++..++.
T Consensus 147 ~~~--~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DLV--EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CCH--HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHH--HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 321 112 689999999999999999999999998 3333221111 22456667777788899999999999999987
Q ss_pred CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009622 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 394 (530)
..+..... ..+++.+..++.+. ++.|..+|+.++..+....+ .-..+++.|..++.++++.++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 66544311 45678888999888 99999999999998865432 2235788999999998999999999999
Q ss_pred HHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622 395 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 395 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
..++... +.. +. .....+..+..++|..++..+++.+..++...
T Consensus 292 ~~l~~~~-~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 292 SQLAQSN-PPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp HHHCCHC-HHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred HHhhccc-chh----hh-hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 9999864 221 22 22222333344888999999999999888654
No 43
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.39 E-value=1.1e-13 Score=105.79 Aligned_cols=90 Identities=43% Similarity=0.628 Sum_probs=60.3
Q ss_pred CCCchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCcc-C-CC-CCchhhhcCCHHHHHHh
Q 009622 6 NSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAN-D-VN-APGTAKKLENLPVMVAG 81 (530)
Q Consensus 6 ~~~~~~~~~~~k~-~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~-~-~~-~~~~~~~~~~l~~l~~~ 81 (530)
+...+.|++.||+ +++++|+|+||++..++|||+||++.|.|||++........+. . .. ..........++.++..
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 4467899999999 5899999999999999999999999999999986543332111 1 00 11112222467889999
Q ss_pred hcCCChHHHHHHHH
Q 009622 82 VWSNDSGVQYECTT 95 (530)
Q Consensus 82 l~s~~~~~~~~a~~ 95 (530)
+.|+|+..|+.|..
T Consensus 83 v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 83 VNSDDPEVQLEATQ 96 (97)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHhhC
Confidence 99999999999875
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.38 E-value=5.1e-10 Score=108.55 Aligned_cols=322 Identities=12% Similarity=0.103 Sum_probs=226.4
Q ss_pred CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHc-----CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009622 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS-----GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (530)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-----g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~ 147 (530)
....++..+.. ..+++....+..+..++... +.....+.+. .....++.+|..++ .-++..|+.+|+.+...
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 45667777764 56777888888888888773 3334444443 46677888998877 79999999999999875
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC-chhHHHHHHHH
Q 009622 148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWT 225 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~ 225 (530)
.+.........-.++.|...+++ .+...+..|+.+|..+....+ +|..+.+.+++++|+.+|.... +.+++..++.|
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 44321111111133455556655 346788889999999987776 8988888889999999996544 77999999999
Q ss_pred hhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhhCCC-
Q 009622 226 LSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVFPRLAEFLMHP- 297 (530)
Q Consensus 226 L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~i~~L~~lL~~~- 297 (530)
++-|+...+........++++.++.+++.. .+.+..-++.++.|+.... ......+++.|+++ ++..|...
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK 289 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence 999998865444444578999999999865 6778888899999998643 12334566667655 44555442
Q ss_pred --CchhHHHHHHHH--------hHhhc----------C----Cc-h--------hhHHHh--hcCchHHHHHhhcCCCch
Q 009622 298 --SPSVLIPALRTV--------GNIVT----------G----DD-M--------QTQCVI--EYQALPCLLNLLSGNYKK 342 (530)
Q Consensus 298 --~~~~~~~a~~~L--------~nl~~----------~----~~-~--------~~~~~~--~~~~l~~L~~lL~~~~~~ 342 (530)
++++... +..+ -.+++ | ++ + ....+- +..++..|..+|..+.++
T Consensus 290 ~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 290 YDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 3332221 1111 11111 0 11 1 111111 124688999999655488
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
.+..-||.=++.++...|.....+-+.|+=..+++++.++|++||.+|+.|+..+..+
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999998888887777889999999999999999999999999887653
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.5e-10 Score=115.14 Aligned_cols=367 Identities=17% Similarity=0.208 Sum_probs=234.4
Q ss_pred CCHHHHHHhhc----CCChH-HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhc
Q 009622 73 ENLPVMVAGVW----SNDSG-VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~----s~~~~-~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~-~~~~~i~~~a~~~L~~l~~ 146 (530)
+.||.++..|. .+.+. ++..++.++..++..- .|..-.--.+.++-.+++-+.. +.+..+|..|+.+|.|-..
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE 203 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence 46677776665 34444 7778899999775442 2332111234556666665543 3347899999999998655
Q ss_pred CChhh-HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009622 147 GTSEH-TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (530)
Q Consensus 147 ~~~~~-~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~ 225 (530)
....+ ....-.+-+++..+..-++++.+++..|+.+|..|..-...+-..-+.......-+..+ +++++++.-.++..
T Consensus 204 f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEF 282 (859)
T KOG1241|consen 204 FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEF 282 (859)
T ss_pred HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHH
Confidence 22211 11122234566677777889999999999999999754333323323333344444555 68899999999999
Q ss_pred hhhhccCCCC-------------C--Ch----hhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHH
Q 009622 226 LSNFCRGKPQ-------------P--PF----DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQ 279 (530)
Q Consensus 226 L~~L~~~~~~-------------~--~~----~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~ 279 (530)
.+++|...-. + .. .....++|.|+.+|... +......+..||.-++....+.
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-- 360 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-- 360 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc--
Confidence 9998864311 1 11 12357788888888642 1234444555555544332211
Q ss_pred HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009622 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 280 ~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
++. .+++.+-+-+++++|.-+..|+.++|.+..+.+.....-+-.+++|.++.++.++ .-.++..++|+++.++.+.
T Consensus 361 -Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 361 -IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred -chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhc
Confidence 222 4566666677889999999999999999999887777777789999999999977 8889999999999999876
Q ss_pred HHHHHHHH-HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH----HHH---cCChHHHHhccC---CCChH
Q 009622 360 REQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF----LVI---QGCIKPLCDLLV---CPDPR 428 (530)
Q Consensus 360 ~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~----l~~---~~~l~~L~~lL~---~~~~~ 428 (530)
++.+..-. -...++.++.-|.+ .|++..+++|++.+++.+........ ... ..++..|+..-+ ..+..
T Consensus 438 ~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN 516 (859)
T KOG1241|consen 438 PEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN 516 (859)
T ss_pred hhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence 65432222 23456666666653 68999999999999995321000000 000 011222322222 24556
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 009622 429 IVTVCLEGLENILKVGEAE 447 (530)
Q Consensus 429 v~~~al~~l~~ll~~~~~~ 447 (530)
++..+-++|..+++..++.
T Consensus 517 LR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 517 LRSAAYEALMELIKNSTDD 535 (859)
T ss_pred HHHHHHHHHHHHHHcCcHH
Confidence 8888888888888776553
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.1e-09 Score=106.94 Aligned_cols=343 Identities=16% Similarity=0.179 Sum_probs=242.6
Q ss_pred CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.+|.|+.+|+. .+.+++..|++++..++..- ++....+++.++||.|++-|..-...++.++++.+|-.|+...+
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--- 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--- 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---
Confidence 56888888885 56899999999999997653 45567788999999999877665558999999999999998544
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
..+.++|++...+.+|.--+..+++.|+.+.+|+|..-+ +--+.+++ .+|.|..+| ...|....++++-++..++.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence 457789999999999988788899999999999995322 12233443 788888888 77888899999999999988
Q ss_pred CC-CCCC---hhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc----
Q 009622 232 GK-PQPP---FDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP---- 299 (530)
Q Consensus 232 ~~-~~~~---~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---- 299 (530)
.. +.+. .....+++....+++...+ ..+-.-.++.+..++.+.+.....+.+.++...|..+|.....
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na 444 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA 444 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence 76 2222 2334677888888876543 2334456677778888877666667777877777777754210
Q ss_pred ----------hhHHHHHHHH------------------------------------------------hHhhc------C
Q 009622 300 ----------SVLIPALRTV------------------------------------------------GNIVT------G 315 (530)
Q Consensus 300 ----------~~~~~a~~~L------------------------------------------------~nl~~------~ 315 (530)
.-.......+ ..+.. +
T Consensus 445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~ 524 (1051)
T KOG0168|consen 445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG 524 (1051)
T ss_pred ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence 0000000000 01110 0
Q ss_pred ---------CchhhHHHhh----------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHh-CcHHH
Q 009622 316 ---------DDMQTQCVIE----------YQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEA-NIIGP 374 (530)
Q Consensus 316 ---------~~~~~~~~~~----------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~i~~ 374 (530)
+..-...++. ..++|.|+++..+.-++.||..+..+|..+.. .+.+.+..++.. ++-..
T Consensus 525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~ 604 (1051)
T KOG0168|consen 525 TSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSH 604 (1051)
T ss_pred cchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHH
Confidence 0000011111 24688888888877789999999999999887 577777777754 44445
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009622 375 LVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423 (530)
Q Consensus 375 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 423 (530)
+-.++.+.+..|---|+...--|...-..-+...+...|++..+-.+..
T Consensus 605 lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 605 LAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 5567777888887777777777766555567778888898888777765
No 47
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.23 E-value=3.2e-10 Score=112.12 Aligned_cols=344 Identities=13% Similarity=0.104 Sum_probs=222.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCC-hhh
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGT-SEH 151 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~-~~~ 151 (530)
.+..++..++++.+..+...+..+.++.+.-+...+..-.+.-.+.-++..++.++ ...+......++.+-.... ...
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy 796 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY 796 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence 45666777778888788888887777776533333333333344455555554433 1233333443333322211 111
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh--hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD--LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~--~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
. ..++..++..|.++++.++++++.+++.|+.--..|.. .+...|. .|...| ....+++.-..+.++..+
T Consensus 797 l-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI 868 (1172)
T KOG0213|consen 797 L-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI 868 (1172)
T ss_pred h-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence 1 13456778889999999999999999999743222211 2222232 355666 677889988888888777
Q ss_pred ccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009622 230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 230 ~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~ 308 (530)
+... -..-..-..+++|.|...|++....++++++..++.++...++.+..---..+.--|+++|...+..++..|..+
T Consensus 869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7654 112223357899999999999999999999999999998776543322223455668888888899999999999
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009622 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
+|.|+.. +-...++..|+.-|+.. +...|.....+++-.+..+.. -.++|.|+.=...++..||.
T Consensus 949 fG~Iaka-------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen 949 FGYIAKA-------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred hhHHHHh-------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHH
Confidence 9999852 22334566666666654 444444444444444332211 13788888877788899999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~ 442 (530)
-++.+++.+......-..+++. -+.+.|-+.|.+.|..-++.+..++..+.-
T Consensus 1014 GVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred hHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 9999999988744333333333 256667778888888888888888877753
No 48
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=5e-09 Score=104.51 Aligned_cols=357 Identities=14% Similarity=0.075 Sum_probs=229.3
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009622 79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (530)
Q Consensus 79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 158 (530)
+..|.+..|...-.|..++..++..+ -|.-.+ .++++.|+.....+....++..++.+|+.+|.+-....-.--.+
T Consensus 96 l~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n~w---p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN 171 (859)
T KOG1241|consen 96 LRTLGSPEPRRPSSAAQCVAAIACIE-LPQNQW---PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSN 171 (859)
T ss_pred HHHcCCCCCCccchHHHHHHHHHHhh-CchhhC---HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence 34566677777777888888888765 344333 35677777777766634589999999999998543321111124
Q ss_pred CChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-C
Q 009622 159 GAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P 234 (530)
Q Consensus 159 g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~ 234 (530)
.++..+++.... ++..+|-.|+.+|.|-..... .+....-..-++...+..- .++|.+++..|..||..+..-. .
T Consensus 172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 567777777765 678899999999987542211 0111101111233333333 7789999999999999887643 2
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHH---HHHH---------------HhCcHHHHHHhhCC
Q 009622 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI---QAVI---------------EAGVFPRLAEFLMH 296 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~---~~~~---------------~~~~i~~L~~lL~~ 296 (530)
.....+...+++.-+..+++++++|...++..-+++++..-+.. .... -.+++|.|+++|.+
T Consensus 251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k 330 (859)
T KOG1241|consen 251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK 330 (859)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence 22223334455666667788888887777766666653321100 0011 12677888888865
Q ss_pred -------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 009622 297 -------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA 369 (530)
Q Consensus 297 -------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 369 (530)
++|.....|--||.-++...... ++. .++|.+-.-++++ +.+-|..|+.+++.+..+.......-+-.
T Consensus 331 qde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~ 405 (859)
T KOG1241|consen 331 QDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVI 405 (859)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHh
Confidence 24667777777776666433322 122 4566666677777 88999999999999988755544444455
Q ss_pred CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 370 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~ 446 (530)
+.+|.++.++.++...++..+.|+|+.++............-...+..+..-| ...|.+..+++|++..|.+....
T Consensus 406 qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~e 481 (859)
T KOG1241|consen 406 QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYE 481 (859)
T ss_pred hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHH
Confidence 78999999999888899999999999999864311111111223334443333 35788999999999999976544
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.17 E-value=1.1e-08 Score=95.76 Aligned_cols=323 Identities=12% Similarity=0.078 Sum_probs=227.1
Q ss_pred CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHH-------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 009622 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVI-------RSGVVPRFVEFLLREDYPQLQFEAAWALTNIA 145 (530)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-------~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~ 145 (530)
.+..++.++.. ..++....++..+..+++.. .....++ ....-+.++.+|...+ .-+...+.+++..++
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 56778888875 34666677888888888874 3322221 1234667888998888 788888999999988
Q ss_pred cCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh-cCCCchhHHHHHH
Q 009622 146 SGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNAT 223 (530)
Q Consensus 146 ~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll-~~~~~~~~~~~a~ 223 (530)
.............-....|...+.+ .+......|+.+|..+....+ +|..+....++..++..+ ....+.+++...+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 7433221110000012344445555 667788889999999987776 788888888888888888 4556889999999
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCCh------HHHHHHHHhCcHHHHHHhhCC
Q 009622 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVFPRLAEFLMH 296 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~i~~L~~lL~~ 296 (530)
.|++.|+.+++........+.++.|..+++.. .+.|..-++.++.|+....+ +....++..++.+.+-.+...
T Consensus 222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 99999998875555555678899999999865 67788889999999987764 333456665655544444332
Q ss_pred --CCchhHHHHHHHH-------hHhhcC--------------Cc---------hhhHHHh--hcCchHHHHHhhcCCCch
Q 009622 297 --PSPSVLIPALRTV-------GNIVTG--------------DD---------MQTQCVI--EYQALPCLLNLLSGNYKK 342 (530)
Q Consensus 297 --~~~~~~~~a~~~L-------~nl~~~--------------~~---------~~~~~~~--~~~~l~~L~~lL~~~~~~ 342 (530)
+++++....-..- -.+++. +| +....+. +..++..|+++|..+.+|
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 2333322221111 111111 11 1111122 235799999999988679
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
.+..-||.-++.+..+.|+....+.+.|+=+.+++++.++|++||.+|+.|+..+..+
T Consensus 382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999888654
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.12 E-value=5.9e-09 Score=97.54 Aligned_cols=281 Identities=14% Similarity=0.091 Sum_probs=202.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..++..+...|.-+...+.+.+.++++.+ +.........=....|-..++++.+++-..-|++||-.+.. -++.+.
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~ 192 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRY 192 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhh
Confidence 4788899999999988888999999998764 22221111111233445556664446778889999999998 688888
Q ss_pred HHHhCCChHHHHHhhC-C-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622 154 VVIDHGAVPIFVKLLY-S-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~-~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.++...++..++..+. . .+..++.+.+.+++-|+...+ ..+.+...+.++.|.+++..+..+.+.+-++.++.|++.
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8998888999999883 3 567899999999999987766 446667888999999999888899999999999999998
Q ss_pred CCCCCCh------hhhhchHHHHHHhhcC---CChhHHHHHHHHHHHh-------ccCChH-------------------
Q 009622 232 GKPQPPF------DQVSPALPALAHLIHS---NDDEVLTDACWALSYL-------SDGTND------------------- 276 (530)
Q Consensus 232 ~~~~~~~------~~~~~~l~~L~~ll~~---~d~~v~~~a~~~l~~l-------~~~~~~------------------- 276 (530)
..+.... .+...-++..++.|.. +|+++..+.-..-..| +..++.
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 8643221 1223333444444442 3666655533322222 111110
Q ss_pred ----HHHHHHH--hCcHHHHHHhhCCCC-chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHH
Q 009622 277 ----KIQAVIE--AGVFPRLAEFLMHPS-PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349 (530)
Q Consensus 277 ----~~~~~~~--~~~i~~L~~lL~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~ 349 (530)
+...+-+ ..++..|+.+|..++ +.+..-||.=+|..+...|+....+.+.|+=..++.++.++ +++||.+|.
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~AL 430 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHAL 430 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHH
Confidence 0111111 146788899998765 78889999999999999999988888999999999999999 999999999
Q ss_pred HHHHHHhcC
Q 009622 350 WTVSNITAG 358 (530)
Q Consensus 350 ~~L~nl~~~ 358 (530)
.++-.+..+
T Consensus 431 lavQ~lm~~ 439 (442)
T KOG2759|consen 431 LAVQKLMVH 439 (442)
T ss_pred HHHHHHHhh
Confidence 998777543
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.1e-08 Score=90.28 Aligned_cols=190 Identities=21% Similarity=0.240 Sum_probs=159.4
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (530)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (530)
.+.+-++.++.-|..++..-+ +...+++.|++..++..+.+.+..+|..|++++|.++..++.....+++.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 356667777777777776543 4566888899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009622 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 412 (530)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 412 (530)
.+.++.+..+|..|..+++.+...++.....+...+....|.+++++ .+..++..|+..+..+..... .....+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence 99987567888999999999999999999999988889999999998 478899999999999988643 333444566
Q ss_pred CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622 413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~ 446 (530)
+....+..+....+..+...++.++..++..-..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 7777788888888888888888888877755443
No 52
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=5.1e-07 Score=90.81 Aligned_cols=323 Identities=18% Similarity=0.208 Sum_probs=237.7
Q ss_pred CCHHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCh-
Q 009622 73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTS- 149 (530)
Q Consensus 73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~-~~~~i~~~a~~~L~~l~~~~~- 149 (530)
+.++.|+.-+.+.. ++.+..|++.|..++. .....+...| ++.|++.|..+ .++++...++..+.++.....
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 58899999888644 7889999999987753 3344555555 88888888764 358999999999999887442
Q ss_pred -----hh----------HHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhc-CChHHHHHhhc
Q 009622 150 -----EH----------TKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQ-GGLVPLLAQLN 211 (530)
Q Consensus 150 -----~~----------~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~i~~~-~~i~~Ll~ll~ 211 (530)
+. .+.++ ..+.|..|+..+...+-.+|..++..|.++.... ++.++.++.. -+|..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 11 22333 3578999999999999999999999999988654 4556655543 4789999999
Q ss_pred CCCchhHHHHHHHHhhhhccCCCCCCh-hhhhchHHHHHHhhcCC---C-hhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009622 212 GQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (530)
Q Consensus 212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (530)
.+..+.++..++..|..|.++.+.... .....++..|..++... | .-|..+|+..+.|+..+...+.+.+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 777888999999999999998755443 44578888999998754 3 468889999999999988888888889999
Q ss_pred HHHHHHhhCCC---C-----chh-----HHHHHHHHhHhhcCCc-----hhh-HHHhhcCchHHHHHhhcCCC-chhHHH
Q 009622 287 FPRLAEFLMHP---S-----PSV-----LIPALRTVGNIVTGDD-----MQT-QCVIEYQALPCLLNLLSGNY-KKSIKK 346 (530)
Q Consensus 287 i~~L~~lL~~~---~-----~~~-----~~~a~~~L~nl~~~~~-----~~~-~~~~~~~~l~~L~~lL~~~~-~~~v~~ 346 (530)
+++|.++|... + |.- ...++.++..++.-.. .+. ..+...+++..|..++.++. ..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 99999887642 2 222 2345566666654221 222 34557899999999998873 568999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC---------cHH-HHHHHHhcC-chhHHHHHHHHHHHhhcCC
Q 009622 347 EACWTVSNITAGNREQIQAVIEAN---------IIG-PLVALLENA-EFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~---------~i~-~L~~ll~~~-~~~v~~~a~~aL~nl~~~~ 401 (530)
++..+++++.+++...-..+.+.. .+- .++.+..+. .+..|..+.+++..+....
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 999999999998877666665321 111 222233333 6789999999999888754
No 53
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=4.5e-07 Score=90.31 Aligned_cols=217 Identities=18% Similarity=0.157 Sum_probs=154.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.-+.++.+|.+.-|-++..|+-.+-++.-. .|..- ...+|.|++-|.+++ |.++..|+.+++.++..+|.+.-
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLk--YPeAl----r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLK--YPEAL----RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHh--hhHhH----hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc
Confidence 346777788888888888888888777654 22211 125888999888888 89999999999999987776643
Q ss_pred HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh--h
Q 009622 154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN--F 229 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~--L 229 (530)
. +-|.+.++|.. .++ +.-..+..+++|+--.|..... .+++|.+++....-.++...++.++.. +
T Consensus 218 ~-----LAP~ffkllttSsNNW-mLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 218 Q-----LAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred c-----ccHHHHHHHhccCCCe-ehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 3 34777777754 333 4455777888887666654443 688899988443344454444444432 2
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L 309 (530)
+.+ .........-++..|--++.++|+.+..-.+.+++.+....+..++. .-+.++.+|.+.++++|..|+..+
T Consensus 287 s~g-~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 287 SSG-MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred ccC-CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHH
Confidence 222 12333445667788888899999999999999999999877765552 346788999999999999999999
Q ss_pred hHhhc
Q 009622 310 GNIVT 314 (530)
Q Consensus 310 ~nl~~ 314 (530)
--++.
T Consensus 361 ~gmVs 365 (877)
T KOG1059|consen 361 YGMVS 365 (877)
T ss_pred HHHhh
Confidence 87774
No 54
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.05 E-value=1.2e-08 Score=97.89 Aligned_cols=224 Identities=18% Similarity=0.228 Sum_probs=166.8
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHH------hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC
Q 009622 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIE------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327 (530)
Q Consensus 254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~------~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~ 327 (530)
+.+++++.+++..+..+....+...+.+.. ......++.++.++++.+...|+.+++.++...+....... .+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HH
Confidence 468899999999999998877766665554 23678888899999999999999999999987665543322 45
Q ss_pred chHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH------hcC-chhHHHHHHHHHHHh
Q 009622 328 ALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL------ENA-EFDIKKEAAWAISNA 397 (530)
Q Consensus 328 ~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll------~~~-~~~v~~~a~~aL~nl 397 (530)
+++.++.++.+.. +..++..|+.+++++.. .+..+..+.+.++++.+..++ .+. +..++.+++.++.-+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 5677777766421 55677899999999975 478888888999999999999 222 688999999999999
Q ss_pred hcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009622 398 TSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 476 (530)
Q Consensus 398 ~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 476 (530)
+. +++..+.+...++++.|.++++ ....+++..++.++.|++...... +...+-.+|++..+..|+.
T Consensus 226 SF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~----------~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 226 SF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS----------NIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp TT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT----------HHHHHHHH-HHHHHHHHHS
T ss_pred hc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH----------HHHHHHHccHHHHHHHHhc
Confidence 99 6688899999999999999987 456789999999999999776542 4677778999999999975
Q ss_pred C--CCHHHHHHHHHHHH
Q 009622 477 H--DNAEIYEKSVKLLE 491 (530)
Q Consensus 477 ~--~~~~v~~~a~~il~ 491 (530)
. .|+|+.+--..+-+
T Consensus 294 rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 294 RKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp S--SSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 4 88888877666544
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.9e-08 Score=93.00 Aligned_cols=184 Identities=16% Similarity=0.191 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009622 130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (530)
Q Consensus 130 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l 209 (530)
+++-+..|+.-|..++. +-++...+++.|++..++.++.+.+..+|+.|+|+|+..+..+|..+..+++.|++..|+..
T Consensus 96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 47888889988988888 67888889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009622 210 LNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (530)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (530)
+..+.+..++..|+++++.+.++.+.. ......+....|...+.+ .+...+..++..+.++..........+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 977778888999999999999998433 333445668899999998 56778888999999998776655555556677
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622 287 FPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 287 i~~L~~lL~~~~~~~~~~a~~~L~nl~~ 314 (530)
-..+..+....++.+...++.++..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 6777777777788888888877766654
No 56
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.01 E-value=5.7e-08 Score=94.01 Aligned_cols=360 Identities=13% Similarity=0.063 Sum_probs=218.3
Q ss_pred CCHHHHHHhhc----CCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcC-CHHHHH-HhhcCCCCHHHHHHHHHHHHHHh
Q 009622 73 ENLPVMVAGVW----SND-SGVQYECTTQFRKLLSIERSPPIEEVIRSG-VVPRFV-EFLLREDYPQLQFEAAWALTNIA 145 (530)
Q Consensus 73 ~~l~~l~~~l~----s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-~v~~Lv-~ll~~~~~~~i~~~a~~~L~~l~ 145 (530)
+.+|.+++.+. .+. ......++..+...+-.. .| -..+..++ ++-.++ .-++.+.+..+|..|+.+|.+-+
T Consensus 129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl 206 (858)
T COG5215 129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-AP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL 206 (858)
T ss_pred ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc-CH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 45666666554 333 346778888888876543 33 22222222 333333 34445445789999999998833
Q ss_pred cCChhhHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHH
Q 009622 146 SGTSEHTKVVID----HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221 (530)
Q Consensus 146 ~~~~~~~~~~~~----~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~ 221 (530)
.. .+..+.. +-+++..+..-+.++.+++..+..+|..|..-...+-+..++..........+ ++++.++...
T Consensus 207 ~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~q 282 (858)
T COG5215 207 MF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQ 282 (858)
T ss_pred HH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHH
Confidence 21 1111111 23445566666778999999999999988644333333333332222233334 7889999999
Q ss_pred HHHHhhhhccCCCCCC-----------------hhhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHH
Q 009622 222 ATWTLSNFCRGKPQPP-----------------FDQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDK 277 (530)
Q Consensus 222 a~~~L~~L~~~~~~~~-----------------~~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~ 277 (530)
++...+.+|....... .....+++|.|+++|... |..+-..+..||--.+....+
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd- 361 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD- 361 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence 9999988887641111 112356899999999753 223444455555444332221
Q ss_pred HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 278 ~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.++. .++..+-+-+.+++|.-+..++.++|.+..+.......-+-...+|.+...+.++ .--++..++|+++.++.
T Consensus 362 --~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad 437 (858)
T COG5215 362 --KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIAD 437 (858)
T ss_pred --HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHH
Confidence 1222 2555555667889999999999999999998877665666678899999999877 88899999999999987
Q ss_pred CCHHHHHHHHHhCcHHHHHHHHh---cCchhHHHHHHHHHHHhhcCCCHHH--HHHHHHc---CChHHHHhcc--CCCCh
Q 009622 358 GNREQIQAVIEANIIGPLVALLE---NAEFDIKKEAAWAISNATSGGTHEQ--IKFLVIQ---GCIKPLCDLL--VCPDP 427 (530)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~nl~~~~~~~~--~~~l~~~---~~l~~L~~lL--~~~~~ 427 (530)
+-+..+... |-++..+.... .+.+.+...++|...|++.+-.+-. ...++-. .++..|+..- ..++.
T Consensus 438 ~va~~i~p~---~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~ 514 (858)
T COG5215 438 HVAMIISPC---GHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNES 514 (858)
T ss_pred HHHHhcCcc---ccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccch
Confidence 544433322 22222222211 1357899999999999987542211 0111111 1122222211 24455
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 009622 428 RIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 428 ~v~~~al~~l~~ll~~~~~ 446 (530)
..+..+..+|..++.+++.
T Consensus 515 n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 515 NLRVSLFSALGTLILICPD 533 (858)
T ss_pred hHHHHHHHHHHHHHhhcch
Confidence 6777788888888776654
No 57
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=4.8e-08 Score=100.65 Aligned_cols=271 Identities=19% Similarity=0.225 Sum_probs=209.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009622 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 166 (530)
-+.|+.|........+..+.|+.+ +|.+++.|-+. --|..|+..|+....-.+-....-..-|+.|++++
T Consensus 450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 356777888777777777677665 56666666543 34777999999999877887777788899999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC--chhHHHHHHHHhhhhccCCCCCChh-hhhc
Q 009622 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFD-QVSP 243 (530)
Q Consensus 167 lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~ 243 (530)
+|+++..+++..-+.+.+.|..-++.|+..+++.++-..++..+..++ +++-+..++++|+.++++.+..... ...+
T Consensus 520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 999999999999999999988777889988888888888888884323 5678889999999999986444433 3466
Q ss_pred hHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----Cch
Q 009622 244 ALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDM 318 (530)
Q Consensus 244 ~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~----~~~ 318 (530)
++..++..+.++ .+-++..++-+|+.|-.+.+...-.-...+..+.|..+|.++-+++|..|+.+||.+..+ .++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde 679 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE 679 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence 777888888775 678899999999999887766555556668889999999999999999999999999875 333
Q ss_pred hhHHH------------hhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009622 319 QTQCV------------IEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE 368 (530)
Q Consensus 319 ~~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (530)
+...+ ++..+. -.++.+++.+ .+-++.+.+-+|+.++.+...+...+.-
T Consensus 680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 33222 222222 2566677777 9999999999999998877666554443
No 58
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.5e-06 Score=85.94 Aligned_cols=324 Identities=15% Similarity=0.158 Sum_probs=234.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCc---
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP--- 191 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~--- 191 (530)
.|+.|++-+.+..-++-|..|++.|-.++. .++..+... +++.|++.|+. .++++...++.++.++....+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 588899888776557779999999999887 455555544 58889999976 678999999999999986542
Q ss_pred ---hh----------hh-hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hhhhchHHHHHHhhcC
Q 009622 192 ---RC----------RD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHS 254 (530)
Q Consensus 192 ---~~----------~~-~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~ll~~ 254 (530)
.. .+ .+...+.|..++..+ ...|-.++.+++..+.++....|.... .....++..++.+|..
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 11 11 233456777888888 778899999999999999887654332 2336678889999988
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC----CchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009622 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (530)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~ 330 (530)
.-+.|+-.++..|..++..+....+.+.=.+++.+|+.++... ..-+...|+..|.|+...+......+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 8889999999999999988876655555568999999999764 235788999999999999888888888999999
Q ss_pred HHHHhhcCCC--ch--------hH--HHHHHHHHHHHhc-CCH----HHH-HHHHHhCcHHHHHHHHhcC--chhHHHHH
Q 009622 331 CLLNLLSGNY--KK--------SI--KKEACWTVSNITA-GNR----EQI-QAVIEANIIGPLVALLENA--EFDIKKEA 390 (530)
Q Consensus 331 ~L~~lL~~~~--~~--------~v--~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~ll~~~--~~~v~~~a 390 (530)
.|.++|.... +. ++ ...+..++.-+.. ++. .+. ..+...+++..|+.++.++ ..+|+.++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998875421 21 11 1345555666655 322 233 3455788999999998776 57899999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCC----------hHHHHhccCC-CChHHHHHHHHHHHHHHhhhhh
Q 009622 391 AWAISNATSGGTHEQIKFLVIQGC----------IKPLCDLLVC-PDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l~~~~~----------l~~L~~lL~~-~~~~v~~~al~~l~~ll~~~~~ 446 (530)
..++.+++.+.. ..-..+.+-.+ +-.+..+..+ ....++..++.++..++-....
T Consensus 338 iitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~ 403 (970)
T KOG0946|consen 338 IITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD 403 (970)
T ss_pred HHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence 999999998753 33334433211 1122333333 3456777778887777655433
No 59
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.97 E-value=2.7e-08 Score=95.45 Aligned_cols=218 Identities=18% Similarity=0.224 Sum_probs=157.5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCchhhhhHhh------cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009622 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (530)
Q Consensus 170 ~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~------~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 243 (530)
+++.++...++..+..+..+.+...+.+.. .....++++++ ..+|..+...++.++..+....+........+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 467889999999999999888866666554 23678889977 77799999999999999999876666554466
Q ss_pred hHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-----CC--CCchhHHHHHHHHhHh
Q 009622 244 ALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-----MH--PSPSVLIPALRTVGNI 312 (530)
Q Consensus 244 ~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-----~~--~~~~~~~~a~~~L~nl 312 (530)
.++.++..+.+ ++.+++.-++.++..+.... .....+.+.++++.+..++ .+ ....++..++.+++-+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 67777776664 45667788999999998654 4566788899999999999 22 3457888999999988
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHhcC--chhHHHH
Q 009622 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENA--EFDIKKE 389 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~--~~~v~~~ 389 (530)
+. +++....+.+.++++.|..+++....+.|.+-+..++.|++...+. ....++..|+++.+-.+.... |+++...
T Consensus 226 SF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 226 SF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp TT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred hc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 76 6666677888889999999998876889999999999999985443 677777877777666655433 6666654
Q ss_pred H
Q 009622 390 A 390 (530)
Q Consensus 390 a 390 (530)
.
T Consensus 305 l 305 (312)
T PF03224_consen 305 L 305 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.97 E-value=3.8e-09 Score=102.73 Aligned_cols=265 Identities=17% Similarity=0.148 Sum_probs=182.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh--hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-
Q 009622 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP- 236 (530)
Q Consensus 160 ~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~--~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~- 236 (530)
++..++.+|+++.+.++.+++.+.+.|+.--..| -..+...|. .|..-+ ....+++.-..+.+++.+.......
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 5677888999999999999999988886321111 122233332 244555 5668888888888887776554222
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC
Q 009622 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 316 (530)
-..-..+++|.|...|++....+..+.+..++.++...++.+..---..+.-.|++.|.+.+.+++..|..++|.|+..
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a- 760 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA- 760 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh-
Confidence 1223578999999999999999999999999999987765433222234556688888889999999999999999852
Q ss_pred chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHH
Q 009622 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396 (530)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 396 (530)
+-...++..|+.-|+.. +...|.....+++-.+..+. -..++|.|+.=...++..||.-.+.+++.
T Consensus 761 ------iGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 761 ------IGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred ------cCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 22334566666666655 55455444444544443211 12477888877777888999999999999
Q ss_pred hhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622 397 ATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 397 l~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
+.........+++. -+.+.|-+.|.+.|+.-+..+...+..+.-.+
T Consensus 827 mFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 827 MFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 88754444444443 24666777888899988888888888876443
No 61
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.1e-06 Score=88.76 Aligned_cols=329 Identities=16% Similarity=0.182 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHH-----HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 009622 88 GVQYECTTQFRKLLSIERSPPIEEVI-----RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (530)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~-----~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 162 (530)
+-...++.+|+++++. +|....++ --|..+.+..++.....+.++..|+.++..++. +.++...++..|.+.
T Consensus 1740 ~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence 3455799999999987 44333332 236788888888776558999999999888777 789999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCC-Chhh
Q 009622 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP-PFDQ 240 (530)
Q Consensus 163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~-~~~~ 240 (530)
.|+.+|.+. +..++.++.+|..+++... .....++.|++..++.++..+...+.+..+...+..+..++ ..+ ....
T Consensus 1817 ~LL~lLHS~-PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHSQ-PSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHHhcC-hHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 999999764 6789999999999976665 66677889999999998877888999999999999998776 111 1111
Q ss_pred hhchH------------HHHHHhhcC--CChhHH------HHHHHHHHHhc--------cCC------hHHH--------
Q 009622 241 VSPAL------------PALAHLIHS--NDDEVL------TDACWALSYLS--------DGT------NDKI-------- 278 (530)
Q Consensus 241 ~~~~l------------~~L~~ll~~--~d~~v~------~~a~~~l~~l~--------~~~------~~~~-------- 278 (530)
.-..+ ...++.+.. .++++. ...-..+..+. .++ ++..
T Consensus 1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 11222 333444442 233221 11111222221 000 0000
Q ss_pred ---------HHHH-H------------hCcHHHHHHhhCCCCch--hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622 279 ---------QAVI-E------------AGVFPRLAEFLMHPSPS--VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (530)
Q Consensus 279 ---------~~~~-~------------~~~i~~L~~lL~~~~~~--~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (530)
..++ + .++++.+.+++...++. .......++-.+....+...+.+-..|.+|.++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 0000 0 14456666666654432 2233334455566667777777777899999999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 009622 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC 414 (530)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 414 (530)
.+.+. ...+-+.|..+|..++.. .-++..+.....+..++..+... +..-.-|+.+|..+......+.....+..|.
T Consensus 2055 Am~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gL 2131 (2235)
T KOG1789|consen 2055 AMCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGL 2131 (2235)
T ss_pred HHHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 99887 666778899999999764 45666677666777777777654 3455589999999988777777778888899
Q ss_pred hHHHHhccCC
Q 009622 415 IKPLCDLLVC 424 (530)
Q Consensus 415 l~~L~~lL~~ 424 (530)
++.|+.+|++
T Consensus 2132 vpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2132 VPYLLQLLDS 2141 (2235)
T ss_pred HHHHHHHhcc
Confidence 9999999975
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=7.5e-07 Score=89.97 Aligned_cols=296 Identities=15% Similarity=0.167 Sum_probs=178.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
..+.+-|++++.-++-.|+.+|.++++. +.+.. +.|.+.+++++.+ +-++..|+.|...+....++....+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~---Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f 180 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSP---EMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF 180 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCH---HHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh
Confidence 4445566778888888888888888654 22322 4777788888877 8889888888888887666655544
Q ss_pred H--------h--CCC----hHHHHHhhCCCC------HHHHHHHHHHHHhhhCCC--chh-----hhhHhhcCChHHHHH
Q 009622 156 I--------D--HGA----VPIFVKLLYSPS------DDVREQAVWALGNIAGDS--PRC-----RDLVLSQGGLVPLLA 208 (530)
Q Consensus 156 ~--------~--~g~----i~~L~~lL~~~~------~~~~~~a~~~L~nl~~~~--~~~-----~~~i~~~~~i~~Ll~ 208 (530)
+ + .|+ +..+..+++... ..+...-+..|.++.... +++ .+.+++-. +-.+++
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr 259 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR 259 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence 2 1 343 344444444311 234455566677766432 111 11111111 112334
Q ss_pred hhcCCCchhHHHHHHHHhhhhccCCCCCC---hhhh-----------------hchHHHHHHhhcCCChhHHHHHHHHHH
Q 009622 209 QLNGQPKLSMLRNATWTLSNFCRGKPQPP---FDQV-----------------SPALPALAHLIHSNDDEVLTDACWALS 268 (530)
Q Consensus 209 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~-----------------~~~l~~L~~ll~~~d~~v~~~a~~~l~ 268 (530)
+| ...+.+........|..+++.-.... .... .-++..|-++|.+.|..++.-++..|.
T Consensus 260 iL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 260 IL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred Hh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence 44 44566666666666666666542111 1111 223455666666777777777777777
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHH
Q 009622 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (530)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 348 (530)
.+...++...+... ..++++|++.+..++..|+..+-.|...+. ... ++..|+..|... +++++...
T Consensus 339 r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~ 405 (866)
T KOG1062|consen 339 RVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADI 405 (866)
T ss_pred hhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHH
Confidence 76666554433222 468889999999999999999988885333 222 366788999888 99999998
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009622 349 CWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 349 ~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
+.-+..++. ..|+... .|..+.+.+...-.-|+..+...+..++..+
T Consensus 406 as~I~~laEkfaP~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 406 ASKIAELAEKFAPDKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHHHhcCCcchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 888888886 3343332 2345555555554455555555555555544
No 63
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.8e-06 Score=87.38 Aligned_cols=342 Identities=17% Similarity=0.174 Sum_probs=232.9
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.+++.....|-+.....--.+.+.+... |... .+++..+++=..+++ +.+|..|++.++.+.- +...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~a----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDLA----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccC--chHH----HhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence 46799999999999888877777888877653 3322 245777777777777 9999999988877665 2222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
. .+...+...+++.++.++..+..+..++-..++ +.+...|++..|-.++ .+.++.+..+|+.+|..+...
T Consensus 120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 2 235788999999999999999999988865544 4677889999999999 688999999999999999988
Q ss_pred CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622 233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 233 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n 311 (530)
.+. .........+..++..+...++.-+..++.++.+-.-.++.... .++.++...|.+.+..+...+...+..
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 754 33334455555566666555666666666666655443332222 456778888889888888888888877
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH-------------------------HH
Q 009622 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ-------------------------AV 366 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------~l 366 (530)
+........ ..+-..+-+.++.++.+. . .++.-|..-+.-+....+.... .+
T Consensus 266 ~~~~~~~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 775444422 222334556666666655 3 5554444444333333332110 00
Q ss_pred H-HhC---cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622 367 I-EAN---IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 367 ~-~~~---~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~ 442 (530)
. +.+ ++..|......-|.+.-+++++|+++++...... ++++..|++++..+-..++..+...+..++.
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 1 111 3333444444457888999999999998854221 5789999999997777777778888888988
Q ss_pred hhhhh
Q 009622 443 VGEAE 447 (530)
Q Consensus 443 ~~~~~ 447 (530)
..++.
T Consensus 416 kyP~~ 420 (734)
T KOG1061|consen 416 KYPNK 420 (734)
T ss_pred cCCCc
Confidence 77664
No 64
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.83 E-value=2.9e-06 Score=82.53 Aligned_cols=351 Identities=13% Similarity=0.027 Sum_probs=213.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009622 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (530)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 157 (530)
.+..|.+..|..-..|+..+..++..+ -|+-.+ .|++..++.....+.....+.+++.++++++..... +.++.
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E-lp~~~w---p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li~ 172 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME-LPNSLW---PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLIQ 172 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh-Cccccc---hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHHH
Confidence 345677888888888888888887654 333322 355666677666665568899999999999984322 22332
Q ss_pred -C-CChHHHHHh-hCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcC----ChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622 158 -H-GAVPIFVKL-LYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG----GLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 158 -~-g~i~~L~~l-L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~----~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
+ .++-.++.. ++. ++..+|-.++.+|.+-+.. .+..+-..+ +++..+..- +.++.+++..+..||..+
T Consensus 173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~ki 248 (858)
T COG5215 173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLNKI 248 (858)
T ss_pred HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHHHH
Confidence 2 333344443 333 6678899999998873211 111111111 233333333 678999999999999887
Q ss_pred ccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH---HHH-------------HHHhCcHHHHHH
Q 009622 230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK---IQA-------------VIEAGVFPRLAE 292 (530)
Q Consensus 230 ~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~---~~~-------------~~~~~~i~~L~~ 292 (530)
..-. ...+..+..-+.......++++++++...+...-+.++...-+. .+. -.-.+++|.|++
T Consensus 249 m~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~ 328 (858)
T COG5215 249 MMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLS 328 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHH
Confidence 6543 22222223334445567788888888777665555555321110 000 011257899999
Q ss_pred hhCC-------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009622 293 FLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 293 lL~~-------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
+|.. ++|.+-..|..||--.+..... .+++ .++..+-.-+.++ +..-|..|..+++.+..+..+....
T Consensus 329 LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT 403 (858)
T COG5215 329 LLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLT 403 (858)
T ss_pred HHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHH
Confidence 9875 3566766666666555543221 2222 2555566667777 8888999999999998865444433
Q ss_pred HHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh-ccC--CCChHHHHHHHHHHHHHHh
Q 009622 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD-LLV--CPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 366 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~-lL~--~~~~~v~~~al~~l~~ll~ 442 (530)
-+-...+|.+...+.++...++..++|+++.++.+- ...+-..|-+...+. ++- ...|.+...+.|...++..
T Consensus 404 ~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 404 KIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD 479 (858)
T ss_pred hhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence 333467888888888778899999999999998642 111111222222222 121 3466777888888888876
Q ss_pred hhhhh
Q 009622 443 VGEAE 447 (530)
Q Consensus 443 ~~~~~ 447 (530)
+..+.
T Consensus 480 h~a~a 484 (858)
T COG5215 480 HIAKA 484 (858)
T ss_pred hhhhh
Confidence 65543
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=8e-06 Score=82.77 Aligned_cols=352 Identities=16% Similarity=0.157 Sum_probs=206.3
Q ss_pred CCCchHHhhhhhhHHHHHHHHhhh--HHHHhhh-hccc---cCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHHHHH
Q 009622 19 AVDADEGRRRREDNMVEIRKNKRE--ESLQKKR-REGL---QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYE 92 (530)
Q Consensus 19 ~~~~~~~~~~r~~~~~~lRk~~~~--~~l~~~R-~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~ 92 (530)
.++..|.|+--......||+.-|+ ....+|| ++.- -+..+.|. -++.++ -++++.|++--....
T Consensus 20 akT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypa---------hFGqie-clKLias~~f~dKRi 89 (866)
T KOG1062|consen 20 AKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPA---------HFGQIE-CLKLIASDNFLDKRI 89 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCc---------cchhhH-HHHHhcCCCchHHHH
Confidence 456667777666777889988888 4444444 3210 01111111 133333 355677766544444
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC
Q 009622 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS 172 (530)
Q Consensus 93 a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~ 172 (530)
+--+..-++.. ......+ +...+.+=|++++ .-+.-.|+.+|++++. ++....+ .|-+-+++++.+
T Consensus 90 GYLaamLlLdE--~qdvllL----ltNslknDL~s~n-q~vVglAL~alg~i~s--~Emardl-----apeVe~Ll~~~~ 155 (866)
T KOG1062|consen 90 GYLAAMLLLDE--RQDLLLL----LTNSLKNDLNSSN-QYVVGLALCALGNICS--PEMARDL-----APEVERLLQHRD 155 (866)
T ss_pred HHHHHHHHhcc--chHHHHH----HHHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhHHh-----hHHHHHHHhCCC
Confidence 44333334433 2222222 2344566667777 7888899999999997 6666554 577888999999
Q ss_pred HHHHHHHHHHHHhhhCCCchhhhhHh--------h--cC----ChHHHHHhhcCCC-----chhHHHHHHHHhhhhccCC
Q 009622 173 DDVREQAVWALGNIAGDSPRCRDLVL--------S--QG----GLVPLLAQLNGQP-----KLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 173 ~~~~~~a~~~L~nl~~~~~~~~~~i~--------~--~~----~i~~Ll~ll~~~~-----~~~~~~~a~~~L~~L~~~~ 233 (530)
+.++..|+.|...+..-.|..-..+. + .| .+..+..++..++ -..+....+..|.++....
T Consensus 156 ~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~ 235 (866)
T KOG1062|consen 156 PYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSG 235 (866)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999876665433322 2 22 3455556664322 1335666777888887765
Q ss_pred CCCChh---hhhchHH----HHHHhhcCCChhHHHHHHHHHHHhccCChHHHH--HHHHhCcHHHHHHhhCCCCchhHHH
Q 009622 234 PQPPFD---QVSPALP----ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ--AVIEAGVFPRLAEFLMHPSPSVLIP 304 (530)
Q Consensus 234 ~~~~~~---~~~~~l~----~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~~L~~lL~~~~~~~~~~ 304 (530)
-.+... ...+.++ .++.+|...|++.-......|..++.+.+.... ..+-...+..++.+. ++..++..
T Consensus 236 yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~Lrvl 313 (866)
T KOG1062|consen 236 YSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVL 313 (866)
T ss_pred CCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHH
Confidence 222221 1233333 345566677777777777777777755432211 011111222222222 23445556
Q ss_pred HHHHHhHhhcCCchhhHHHhhc--------------CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009622 305 ALRTVGNIVTGDDMQTQCVIEY--------------QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370 (530)
Q Consensus 305 a~~~L~nl~~~~~~~~~~~~~~--------------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (530)
|+.+||.+..+.+....++.-. .-=..++.+|+++ |..+|+.|.-.+-.+... .++..
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~----- 385 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV----- 385 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----
Confidence 6666666555544433332110 1123577888888 888999998888777653 23333
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHE 404 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~ 404 (530)
++..|+..|...+++++...+.-+..++..-.|+
T Consensus 386 mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 386 MVKELLEFLESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 4567888888889999999999999888755443
No 66
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.6e-05 Score=77.41 Aligned_cols=314 Identities=16% Similarity=0.134 Sum_probs=210.3
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
++..+..-++.+. +.+|.....||.-+........ ...+.+.+.+++......-+..+.+.++.+..+.. ...
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence 4777888888888 8999999988877665221111 11345778888888888888999999998876654 345
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-
Q 009622 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN- 275 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~- 275 (530)
+.+.+++..+.+.+.+..+..-++.+..+.-..+..-..........++|.++..+.+..+.++..+..+...+...-+
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 5677788888888843333333333444444444433333344456677777777777788888887776655543322
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 276 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
.... .+++.++.-+....|.....++..++.++...+.+.. ..-..++|.+.+.|.+. ++++|+.+..++.++
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 1112 3445555555555899999999999999987776653 34458999999999999 999999999999999
Q ss_pred hc--CCHHHHHHHH------------------------------HhC----cHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 356 TA--GNREQIQAVI------------------------------EAN----IIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 356 ~~--~~~~~~~~l~------------------------------~~~----~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
+. .+++ ++.++ +.. ++|.|.+-+...+..+++.++..+.|++.
T Consensus 323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 87 3433 33221 001 23444444445567788999999999987
Q ss_pred CC-CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622 400 GG-THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 400 ~~-~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~ 446 (530)
-- ++.....++. .+++.|-..+....|+++..+..+|..+++....
T Consensus 402 LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 402 LVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred hhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 54 3333332221 3566666666677999999999999888875544
No 67
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=1.4e-06 Score=84.69 Aligned_cols=321 Identities=16% Similarity=0.090 Sum_probs=201.0
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009622 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (530)
Q Consensus 114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 193 (530)
-.++++.++..+.+++ ..+++.|+..|.|++....... ...-..+...+.++...++..++. ++..+-.+..+-..-
T Consensus 82 ~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTE 158 (675)
T ss_pred HHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccc
Confidence 3578999999999988 8999999999999987321111 111123445566666555555544 455555554332221
Q ss_pred hh-hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc-
Q 009622 194 RD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS- 271 (530)
Q Consensus 194 ~~-~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~- 271 (530)
++ .+--.++++.|-..+ ...++..+...+.-+..|-..++..-......+++.|..+|..+.++|+.-+=.+++.+.
T Consensus 159 ~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 22 111122333333344 556788888877777766555333333455778889999999888888865555554433
Q ss_pred --cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHHH
Q 009622 272 --DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEA 348 (530)
Q Consensus 272 --~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a 348 (530)
..++... --...++.++..+.++++.++..|+.-+..++.-.+... ...-+|++..+++++.+. ++ .++..+
T Consensus 238 eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~a 312 (675)
T KOG0212|consen 238 EIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEYA 312 (675)
T ss_pred HHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHHH
Confidence 1122111 112567888888999999999988877777765444332 334568888899999887 44 455544
Q ss_pred HHHHHHHhc--CCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009622 349 CWTVSNITA--GNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 425 (530)
Q Consensus 349 ~~~L~nl~~--~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 425 (530)
..+-+.+.. +.+..... ++ -.++..|...+.++..+.|..++.-+..+-.....+... ....+...|..-|++.
T Consensus 313 ~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLsd~ 389 (675)
T KOG0212|consen 313 QMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLSDR 389 (675)
T ss_pred HHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhcCc
Confidence 433222222 11111111 33 236788888899888899999987777776643322211 2346788888889999
Q ss_pred ChHHHHHHHHHHHHHHhhhhh
Q 009622 426 DPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 426 ~~~v~~~al~~l~~ll~~~~~ 446 (530)
+..++..++..+..++...+.
T Consensus 390 sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 390 SDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred hhHHHHHHHHHHHHHhcCccc
Confidence 999999999999999876543
No 68
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.72 E-value=1.6e-06 Score=82.21 Aligned_cols=271 Identities=17% Similarity=0.174 Sum_probs=185.8
Q ss_pred HHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhh
Q 009622 110 EEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIA 187 (530)
Q Consensus 110 ~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~ 187 (530)
+.+...|.+..|++++..++ ...++.+|.+.|-.+.. .++++.++..| +..++.+.+. ..++.....+.+|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 44555788999999999887 23579999999999887 77888888776 5555555444 56889999999999999
Q ss_pred CCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC--CChhhhhchHHHHHHhhcCCChhHHHHHHH
Q 009622 188 GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACW 265 (530)
Q Consensus 188 ~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~ 265 (530)
.++.+....++..|++..++-.. ...++.+.+.+..+|.|++.+... ........+-.-|..+-.+.|+-.+.++|.
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 99988888899999999988888 677899999999999999877522 223334555566777777778888999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHH
Q 009622 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345 (530)
Q Consensus 266 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 345 (530)
+++.++.+.+- ...+.++|-+..+-.++.+-++..... --...+.+. ...-++.|+.+|++. .-+.+
T Consensus 330 AV~vlat~KE~-E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EAq 396 (832)
T KOG3678|consen 330 AVAVLATNKEV-EREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEAQ 396 (832)
T ss_pred HHhhhhhhhhh-hHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhhh
Confidence 99999876543 344666777766666666555432111 011111111 123577888999876 55555
Q ss_pred HHHHHHHHHHhcC-C-HHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622 346 KEACWTVSNITAG-N-REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 346 ~~a~~~L~nl~~~-~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
..+++-++.=+.- + .....-+-+-|.|..|-++..+++.--.+-|..+|.-+
T Consensus 397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 5555544433321 1 11123344678899999998877654444444454443
No 69
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.72 E-value=1.4e-05 Score=82.30 Aligned_cols=410 Identities=16% Similarity=0.173 Sum_probs=238.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHc-------------------------------------C
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-------------------------------------G 116 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-------------------------------------g 116 (530)
.+..+++.|...++++|..|++++.-+.+.-+...++.+++. .
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 567788888899999999999999966654323333333221 1
Q ss_pred CHH----HHHHhhcC-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc
Q 009622 117 VVP----RFVEFLLR-EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (530)
Q Consensus 117 ~v~----~Lv~ll~~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 191 (530)
+.+ .|.+.+.. .+...++.+++.+++.+.....+.... ...+++..++..+.++-..++..++.+|+.++...+
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 111 12221111 111235555555555444422211111 223445555556667778899999999999997765
Q ss_pred hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh---cCCChhHHHHHHHHHH
Q 009622 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---HSNDDEVLTDACWALS 268 (530)
Q Consensus 192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll---~~~d~~v~~~a~~~l~ 268 (530)
.. ...+.+..+++-|.........+....+|..+|+....+.-.....++|.+.+.. +.+|+++++.++.++.
T Consensus 207 ~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 207 RD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 32 2234778888888677788888888999999998876555566678889999888 6778999999999998
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCCC----------------------------------CchhHHHHHHHHhHhhc
Q 009622 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHP----------------------------------SPSVLIPALRTVGNIVT 314 (530)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----------------------------------~~~~~~~a~~~L~nl~~ 314 (530)
.+....+..+-..+. .++..+++.+..+ +|.+|+.|+.++..+..
T Consensus 283 ~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is 361 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS 361 (1233)
T ss_pred HHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence 877666554443332 3444455444320 35799999999988765
Q ss_pred CCchhhHHH------------------hhcCchHHHHHhhcCCC-------c-------------hhHHHHHHHHHHHHh
Q 009622 315 GDDMQTQCV------------------IEYQALPCLLNLLSGNY-------K-------------KSIKKEACWTVSNIT 356 (530)
Q Consensus 315 ~~~~~~~~~------------------~~~~~l~~L~~lL~~~~-------~-------------~~v~~~a~~~L~nl~ 356 (530)
...+....+ +...++..++.+|.+.. + ..++.....++..+.
T Consensus 362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~ 441 (1233)
T KOG1824|consen 362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQ 441 (1233)
T ss_pred ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHH
Confidence 433222111 11223344444443210 0 011111111111111
Q ss_pred c----CCHHHH-------HHHH--------H--hCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009622 357 A----GNREQI-------QAVI--------E--ANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQG 413 (530)
Q Consensus 357 ~----~~~~~~-------~~l~--------~--~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 413 (530)
. .+-..+ ..++ + ..++|.++..+.+. ....+..++..+.+......++....++. .
T Consensus 442 ~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~-~ 520 (1233)
T KOG1824|consen 442 KQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLS-A 520 (1233)
T ss_pred HHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchh-h
Confidence 1 000000 0011 0 12355555555444 46788899999988887766665544322 3
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHH
Q 009622 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~ 492 (530)
..+++.....++-+++..-|+-....+++.-........-+.+++...+-. -.+..| ....|.+|+++|...+-.
T Consensus 521 Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~----~tl~rL~a~d~DqeVkeraIscmgq 596 (1233)
T KOG1824|consen 521 LSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYD----CTLQRLKATDSDQEVKERAISCMGQ 596 (1233)
T ss_pred hhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHH----HHHHHHhcccccHHHHHHHHHHHHH
Confidence 455666666778888888888888888876654332111134445554431 223333 367889999999887776
Q ss_pred hC
Q 009622 493 YW 494 (530)
Q Consensus 493 ~~ 494 (530)
|.
T Consensus 597 ~i 598 (1233)
T KOG1824|consen 597 II 598 (1233)
T ss_pred HH
Confidence 53
No 70
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.70 E-value=6.6e-06 Score=84.60 Aligned_cols=355 Identities=13% Similarity=0.097 Sum_probs=218.2
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009622 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156 (530)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 156 (530)
.+++.+.++|-+.++.|+.-|.+-+... .-..+.=-+..++..++++|.+.+ .++|..|+.|++-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 6888999999999999999888766542 111111112346888999999988 999999999999999744333221
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC----ChHHHHHhhcCCC-chhHHHHHHHHhhhhcc
Q 009622 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG----GLVPLLAQLNGQP-KLSMLRNATWTLSNFCR 231 (530)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~----~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L~~ 231 (530)
..+..|+.-+-+.....+..+...|......-+.......... +.+.+...+.... ...++..++..+.-+..
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 2345566654444444554444333332222221112222222 3344444443222 33355556655555444
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHh
Q 009622 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG 310 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~ 310 (530)
.....-..+...++..+..-+.++-..++..++.+|+.++...... +. .++++.|++-|... ........+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 3322222245667777777788888899999999999998654321 11 14566676666654 4445555677777
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc------
Q 009622 311 NIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN------ 381 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------ 381 (530)
.++.........- -..++|.+.... ... +.++|+.+..++.-+...+|..+...+. .++..+++.+..
T Consensus 239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 7776443322111 135677787777 555 7889999999999888776665543332 233333333310
Q ss_pred -------------------------C---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009622 382 -------------------------A---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 433 (530)
Q Consensus 382 -------------------------~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~a 433 (530)
+ ++.||++|+.++..++.. ..+....+.+ .+-+.++.-++..+..|..-.
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence 0 257999999999999885 4455555444 345677777787888888888
Q ss_pred HHHHHHHHhhhhh
Q 009622 434 LEGLENILKVGEA 446 (530)
Q Consensus 434 l~~l~~ll~~~~~ 446 (530)
..++..++..-+.
T Consensus 394 f~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 394 FHAYIALLKQTRP 406 (1233)
T ss_pred HHHHHHHHHcCCC
Confidence 8888878765544
No 71
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.68 E-value=1.1e-06 Score=83.34 Aligned_cols=266 Identities=14% Similarity=0.083 Sum_probs=180.1
Q ss_pred CCHHHHHHhhcCCChH--HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622 73 ENLPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~--~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
+.+..+++++++++.+ ++.+|.+.|..++.. .+.+.+..-| +..++.+-+....++.+...+.+|.++...+.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 5788999999988765 588999999999875 4566666555 444455545444489999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
....++..|++..++-..+..++.+..+|+.+|+|++-+ ....+..+++..+-+-|.-+. .+.|.-++..||-+++.|
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 999999999999999999998999999999999999844 334556666766666666666 667888999999999999
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L 309 (530)
+..+.........+-+..+-.++.+.|+.--.. ...+..+ -...+.+++|+.+|.+...+.+..+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----------D~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR----------DAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh----------hhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 988755555555565655555666555542111 1111111 11224578899999866544443333333
Q ss_pred hHhhcC-C-chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622 310 GNIVTG-D-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 310 ~nl~~~-~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
+.=+.- . ....+.+-+-|.+..|-.+.+++ +..-.+-|-.+|.-+
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 222211 1 11223344668899999888876 544334444444433
No 72
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=1.1e-05 Score=84.04 Aligned_cols=380 Identities=13% Similarity=0.118 Sum_probs=242.4
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009622 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156 (530)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 156 (530)
..-++.+...+.++..++..+.++++.- ......+++++.+.++..++. ..++..|...+.++........ ..
T Consensus 241 ~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-d~- 313 (759)
T KOG0211|consen 241 IVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-DV- 313 (759)
T ss_pred HHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch-hh-
Confidence 3333445677889988998888887542 225567889999999998887 7999999998888877322211 11
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC--------------------CCchhh--------------------hh
Q 009622 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAG--------------------DSPRCR--------------------DL 196 (530)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~--------------------~~~~~~--------------------~~ 196 (530)
...+.+.+++...+.++.++.........++. +.+..+ ..
T Consensus 314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~ 393 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPN 393 (759)
T ss_pred hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccc
Confidence 22456778888877777776655544444431 111000 00
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
+....+++.+-.++ .+.+..++...+..+..+.--.+ ........+|.+...++..++.++.+..+.+..+-...+.
T Consensus 394 i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v 470 (759)
T KOG0211|consen 394 IPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDV 470 (759)
T ss_pred cchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCc
Confidence 11111222222222 44455555555544444433222 3334566788888888889999999999877665433332
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 277 ~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
.-...+....++.+..+-....|.++...++.+-.++.... ..+++...-+.+..++.+. ...+++.|+..+.-++
T Consensus 471 ~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~ 546 (759)
T KOG0211|consen 471 IGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALV 546 (759)
T ss_pred ccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHH
Confidence 22224444677888888777789999999998888875333 3444555666677777766 7789999999888887
Q ss_pred cCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHH
Q 009622 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG 436 (530)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~ 436 (530)
..... .......++.++.....++...|...+.++.-++.....+. ....+++.+.++..+..+.|+..++..
T Consensus 547 ~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~ 619 (759)
T KOG0211|consen 547 ETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKH 619 (759)
T ss_pred HHhCc---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHH
Confidence 62211 12223467777877777778999999999998876443333 334578999999999999999999999
Q ss_pred HHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009622 437 LENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491 (530)
Q Consensus 437 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~ 491 (530)
|..+...-.... .+......++.|-..++.++...|.....
T Consensus 620 L~~i~~~L~~~~--------------~~~~v~pll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 620 LPKILKLLDESV--------------RDEEVLPLLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred HHHHHhhcchHH--------------HHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 999887543311 11223455566666667666655554443
No 73
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.63 E-value=1.5e-05 Score=79.89 Aligned_cols=332 Identities=14% Similarity=0.096 Sum_probs=206.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH--TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
+..++..|++.. +.++.+|+..++.++.--..+ -+.+...| -.|-..|....+++.-..+.+|..|.....-.+.
T Consensus 801 ~stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 334455677777 899999999888877621111 12233334 2366777778888877666666655532210001
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.---.+++|.|..+| ++....++.+++..+..+|...+.. .......+.--|+.+|.+.+.+++..+..++++++..-
T Consensus 878 ~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 111245788888989 7888999999999999999887442 22233445556788888899999999999999987542
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009622 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
. -.+++..|+.-|+..+-..+....-+++-.+..+.. ..++|.|+.=...+ +..|+.-...+++-
T Consensus 957 G-------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtP-e~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen 957 G-------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTP-EANVQNGVLKALSF 1021 (1172)
T ss_pred C-------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCc-hhHHHHhHHHHHHH
Confidence 1 114455566555554433333333333333332221 23567776666666 77888888888888
Q ss_pred HhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-------CCCh
Q 009622 355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-------CPDP 427 (530)
Q Consensus 355 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-------~~~~ 427 (530)
+.....+.....+ ..+.|.|-+.|.+.|.--|+.|+.++.+++.+.. -.|+.+.++.+|+ ...|
T Consensus 1022 ~FeyigemskdYi-yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sP 1092 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYI-YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSP 1092 (1172)
T ss_pred HHHHHHHHhhhHH-HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCCh
Confidence 7652211111111 2367788888888899999999999999998642 1244444444443 4677
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622 428 RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 428 ~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
.+++...+++..+-..-.. .-.+..+..=.-|+...|.+..-.+.+..+-
T Consensus 1093 hviqa~~e~~eg~r~~Lg~------------------~~~~~Y~~QGLFHParkVR~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1093 HVIQAFDEAMEGLRVALGP------------------QAMLKYCLQGLFHPARKVRKRYWTVYNSMYH 1142 (1172)
T ss_pred HHHHHHHHHHHHHHHHhch------------------HHHHHHHHHhccCcHHHHHHHHHHHHHhHhh
Confidence 7777777766655432111 1112333333578888898888888876554
No 74
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=4.1e-06 Score=84.81 Aligned_cols=301 Identities=16% Similarity=0.147 Sum_probs=183.1
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..+..++....+++|.++..|++....+ .-...+.. +...+...+++.+ +-++..|+-+..++-..+.
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l---~v~~i~ey-----~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~~--- 153 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCL---RVDKITEY-----LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDIDP--- 153 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeE---eehHHHHH-----HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCCh---
Confidence 3555555556667777776666554422 10111222 4667888888888 9999999999888877544
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
+.+.+.|+++.|..++.+.++.+...|+.+|..|....+..-...+....+..++..+ +.-.--.-+.++-.++..
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhc
Confidence 3466789999999999999999999999999999876653111212222344444444 222222334455566666
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
.+... .....++..+...+.+.++.+...+...+.++......... .+-..+-+.++.++.+.. .+...+++-+.-+
T Consensus 230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 55444 44566777778888888888887888887777655444222 333355666777776666 6666666666555
Q ss_pred hcCCchhhHHH-------------------------h-hcC---chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009622 313 VTGDDMQTQCV-------------------------I-EYQ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 313 ~~~~~~~~~~~-------------------------~-~~~---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
....+.....- . +.+ ++.-+...-..- +.+..+++.+++++++..-.+.
T Consensus 307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~- 384 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS- 384 (734)
T ss_pred HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence 54333211000 0 111 222222222233 6778889999999998743221
Q ss_pred HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.+++..|++++...-..+..+++..+..+..
T Consensus 385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred -----hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 4567777777765544555556666665554
No 75
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=7.5e-05 Score=75.00 Aligned_cols=255 Identities=16% Similarity=0.161 Sum_probs=184.3
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
+-+-++.+|+++. |-++..|+.++..+....++.... .+|.|..-|.++++.++..|+..++.||.-+|..-
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-- 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-- 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence 4556788899888 999999999999999876766543 47999999999999999999999999998887531
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHH--HhccC
Q 009622 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALS--YLSDG 273 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~--~l~~~ 273 (530)
...-|.+.+++.++.+.-+.-..+..+..|+-..| .....++|.|..++.+.. ..+...++.++. +++.+
T Consensus 217 ---L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 ---LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ---ccccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 22567788888777787788888888888876543 334667888999988764 456666666653 33333
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 274 ~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
.++... .+. -.++.|-.++.+.++.++.-++.+++.++...+...+. .-..++.+|.+. ++.+|-.|...|-
T Consensus 290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence 211111 111 24577888888999999999999999999877655433 245788899988 9999999999998
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCc-hhHHHHHHHHHHHhhcCC
Q 009622 354 NITAGNREQIQAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGG 401 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~nl~~~~ 401 (530)
-+... +++.. ++..|+..+...+ ...|.+.+.-+..++...
T Consensus 362 gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 362 GMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 88652 33333 3445555444443 467777777777666643
No 76
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=3e-06 Score=87.83 Aligned_cols=252 Identities=16% Similarity=0.190 Sum_probs=192.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.+|.+++.|-| .-.++.|+..|.+++.-. ...+.....-|+.|.++++|+++. .+++.--+.+-+.|..-++.+.
T Consensus 472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 355666665554 345667888899888664 566777778899999999999998 8999998989999888788888
Q ss_pred HHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622 153 KVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
..+++.++-.++++.|.. -+++-+..|+.+|+.|+.+-+.-+..+.+.+.+...+..+..+..+-++..+|-+|..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 888888778888888865 24588999999999999887777888888899998899995445788899999999999
Q ss_pred ccCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHhCcH---HH
Q 009622 230 CRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVF---PR 289 (530)
Q Consensus 230 ~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~i---~~ 289 (530)
-.+.+.... .....+-..|..+|..+-++|+..++.+|+.+..+ .++....+ ++.-+. -.
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 988754443 34466778899999989999999999999998765 23222211 111111 25
Q ss_pred HHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCc
Q 009622 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (530)
Q Consensus 290 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 328 (530)
++.+++.+.+-++....-++..++.+.......+.-...
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~ 746 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYL 746 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhc
Confidence 677778888888888888888888777665544443333
No 77
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.58 E-value=1.7e-06 Score=84.78 Aligned_cols=338 Identities=15% Similarity=0.103 Sum_probs=200.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCC-CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.+..+++.|++..|.++..|+.....++..-. ......+...|. .|.+.|.... |++.-..+.+++.|.+. ...+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv-~~~~ 680 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSV-HRFR 680 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhh-hccc
Confidence 45677788999999999999877665542210 122333444443 3677777776 88887777777666652 1111
Q ss_pred HHH--HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622 153 KVV--IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 153 ~~~--~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
.+ =-.|++|.|.-+|++....+..+.+..++.||..+|+....---..+--.|+..| .+.+.+++++|..++..++
T Consensus 681 -~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 681 -SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCIS 758 (975)
T ss_pred -ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHH
Confidence 01 0158999999999999999999999999999988876322111112334567777 7789999999999999998
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 310 (530)
+.-. -..++..|+.-|+..+-..+....-+++-.+....- -.++|.|+.=-..++..++.-.+++++
T Consensus 759 ~aiG------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 759 RAIG------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred hhcC------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 7631 134555566555555444443333333333322211 134566665555667778887888777
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH--HHHHHhCcHHHHHHHHhcCchhHHH
Q 009622 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI--QAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
-+.....+.... .-..+.|.|-..|.+. ++.-|..|..++..++.+.+... ..+++ ++..|..-+-.+.|.+..
T Consensus 826 fmFeyig~~s~d-Yvy~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~ 901 (975)
T COG5181 826 FMFEYIGQASLD-YVYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQ 901 (975)
T ss_pred HHHHHHHHHHHH-HHHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHH
Confidence 766433222111 1135678888888888 99999999999999887543311 11111 222222222345566665
Q ss_pred HHHHHHHHhhcCC-CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622 389 EAAWAISNATSGG-THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 389 ~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
.....+-.++..- .....+ .+..=|-.+...++. ..|..++++...
T Consensus 902 ~~~Eg~e~~~~~lg~g~~m~---------Yv~qGLFHPs~~VRk-~ywtvyn~myv~ 948 (975)
T COG5181 902 SFDEGMESFATVLGSGAMMK---------YVQQGLFHPSSTVRK-RYWTVYNIMYVF 948 (975)
T ss_pred HHHHHHHHHHHHhccHHHHH---------HHHHhccCchHHHHH-HHHHHHhhhhhc
Confidence 5444444333211 112222 233334455555554 566666666443
No 78
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00057 Score=62.54 Aligned_cols=341 Identities=15% Similarity=0.154 Sum_probs=226.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP---IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~---~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
.+.+-..|..++..+...++..+..++.+.+... +..++..|+++.++.++..++ .++...|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence 4555556677888899999999998886643222 445668999999999999888 8999999999999998 7888
Q ss_pred HHHHHhCCChHHHHH--hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622 152 TKVVIDHGAVPIFVK--LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~--lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
...++.+..+..+-. +.-..+.-.+......+..|.+-++.....+-..|.+..|..-+....|.-++.+++.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 888888776655432 222345556777888888998888888888888999988888885557888889999999999
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCCh--H-HHHHHHHh--CcHHHHHHhhCCCCchhH
Q 009622 230 CRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN--D-KIQAVIEA--GVFPRLAEFLMHPSPSVL 302 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~--~-~~~~~~~~--~~i~~L~~lL~~~~~~~~ 302 (530)
........+....+++..+...+.-. ++--.-.++...+.+..... + .-+.+++. -+++...+.+...++...
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 88777777777788888888877633 34333334444443332110 0 00111111 234555666777889999
Q ss_pred HHHHHHHhHhhcCCchhhHHHhhcCc--hHHH-HHhhcCCCchhHHHHHHHHHHHHhcC---CHHHH---------HHHH
Q 009622 303 IPALRTVGNIVTGDDMQTQCVIEYQA--LPCL-LNLLSGNYKKSIKKEACWTVSNITAG---NREQI---------QAVI 367 (530)
Q Consensus 303 ~~a~~~L~nl~~~~~~~~~~~~~~~~--l~~L-~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~---------~~l~ 367 (530)
..|+.++|.+.+... ..+.+...|- ...+ ....+.. ...-+..+..+|.+++.. .++++ ..++
T Consensus 322 eaAiDalGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 322 EAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred HHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 999999999886443 3344444332 2222 2223322 334456677888888762 22221 1111
Q ss_pred -H-------hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 009622 368 -E-------ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420 (530)
Q Consensus 368 -~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 420 (530)
+ ..-...+..+++.+.++++..+..++..++.... -....+...+++....+
T Consensus 400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPW-alkeifakeefieiVtD 459 (524)
T KOG4413|consen 400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPW-ALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcH-HHHHHhcCccceeeecc
Confidence 1 1234556667777889999999999999988532 23333335566555444
No 79
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=9.5e-07 Score=85.19 Aligned_cols=306 Identities=14% Similarity=0.117 Sum_probs=198.1
Q ss_pred HHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCC
Q 009622 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSND 256 (530)
Q Consensus 178 ~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d 256 (530)
.++.+|-.++..-...|.-+.+..+.++|+++| ..++..+.-.++..++|+.-.. +-.......+++..|+.++.+.|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 334455556555556677778888999999999 6677777777777888877655 33445556889999999999999
Q ss_pred hhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch---hhHHHhhc----Cc
Q 009622 257 DEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEY----QA 328 (530)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~---~~~~~~~~----~~ 328 (530)
..++.+..|.+.++..+.+...+ ..+..-.+..++++.+++.+.++..++.++.|+.+.+.. ..+..++. -+
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 99999999999999877654322 244556789999999999999999999999999874332 22222221 25
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HhCcHHHHHHHHhcC-----------chhHHHHHHHHHHH
Q 009622 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENA-----------EFDIKKEAAWAISN 396 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~n 396 (530)
.+.|++.+... +|-.-...|+.|.++++.+....+.+. +..++..+.++|... +..+-........+
T Consensus 567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 66777777777 777777789999999886655444444 244555555554321 11222233334444
Q ss_pred hhcCCCHHHHHHHHHcCCh--HHHHhccC---CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHH
Q 009622 397 ATSGGTHEQIKFLVIQGCI--KPLCDLLV---CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI 471 (530)
Q Consensus 397 l~~~~~~~~~~~l~~~~~l--~~L~~lL~---~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 471 (530)
+....+ .+ . .+.. +++-.+=+ .++.++.....|.+.++.-. +....... ..-.-++.+.+.|.-+-+
T Consensus 646 l~e~~d-~f-~----r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~-~~~~~vtr-atveR~~iL~~~G~~e~l 717 (743)
T COG5369 646 LSENSD-KF-K----RLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWK-EDGSEVTR-ATVERIQILCANGIREWL 717 (743)
T ss_pred cccccc-cc-c----cceecCCCccccccccCCCchhhhhccceEEEecccC-ccCCccch-hhHHHHHHHHHccHHHHH
Confidence 443211 11 1 1111 22222211 23344666666766664321 11111000 122457788889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHh
Q 009622 472 ESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 472 ~~l~~~~~~~v~~~a~~il~~~ 493 (530)
..+|.++++.|.+++-..+...
T Consensus 718 ~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 718 VKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHhccCcHHHHHHHHHHHHhh
Confidence 9999999999999999888643
No 80
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00021 Score=72.63 Aligned_cols=366 Identities=14% Similarity=0.151 Sum_probs=225.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009622 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
-..|..+|.|+.......|+..+..+...+. + + +...|.+|+...+.+ .+++...---|...+...++..
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~-d-v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA-- 106 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGK-D-V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA-- 106 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCC-c-H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--
Confidence 3678889999999999999988877765542 2 2 335888999999888 9999998888888888555432
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
+ =.|..+-+-|+++++.+|..|+++|+.|= -.++..=++-.+-++. .+..+-+++.|+.++-.|-+-++
T Consensus 107 L---LSIntfQk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~ 175 (968)
T KOG1060|consen 107 L---LSINTFQKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDP 175 (968)
T ss_pred e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCCh
Confidence 1 23788999999999999999999998762 1111100122222333 77889999999999998877654
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~ 314 (530)
... ..++..+-.+|...++-|.-.|+.++-.+|-..-+.+. +-..++..+|.+-+..-+..++.+|...+.
T Consensus 176 e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 176 EQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred hhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 332 25566677788888999999999998887744333222 345667777666444445555555555543
Q ss_pred CC---chh----------------------hHHHhhc---CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009622 315 GD---DMQ----------------------TQCVIEY---QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (530)
Q Consensus 315 ~~---~~~----------------------~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (530)
.. +.. .....+. -++...-.+|.+. ++.|...+|.+...++-.+ +.
T Consensus 247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~--~~--- 320 (968)
T KOG1060|consen 247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKN--QV--- 320 (968)
T ss_pred hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHH--HH---
Confidence 11 100 0000010 1234445566666 7777777777777776432 11
Q ss_pred HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC----------------CHHHHHH--------HHHcC----ChHHH
Q 009622 367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGG----------------THEQIKF--------LVIQG----CIKPL 418 (530)
Q Consensus 367 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~----------------~~~~~~~--------l~~~~----~l~~L 418 (530)
.+++..|+++|.+ +..+|.-.+..+..++... ++.+.+. |+..+ ++.-|
T Consensus 321 --~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~ 397 (968)
T KOG1060|consen 321 --TKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL 397 (968)
T ss_pred --HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 2356677776654 3456666666665555322 2222221 12111 23445
Q ss_pred HhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 419 ~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
..++++.|..+...+..+|+......-... .-++.-|..|+.+.++-|-..|...|.+...
T Consensus 398 q~YI~s~d~~faa~aV~AiGrCA~~~~sv~----------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 398 QTYIKSSDRSFAAAAVKAIGRCASRIGSVT----------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHhhCchh----------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 555567777777777777777664432211 2234555666666666666666666666544
No 81
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.2e-05 Score=78.43 Aligned_cols=305 Identities=13% Similarity=0.192 Sum_probs=200.1
Q ss_pred hhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009622 70 KKLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 70 ~~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~ 148 (530)
..++.++-+...|.+ .++.++..|+..+..+.+. .+.+..+...|++-.|+.+|.+. |..+..++..|..+++ +
T Consensus 1768 ~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~ 1842 (2235)
T KOG1789|consen 1768 LLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-N 1842 (2235)
T ss_pred hhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-C
Confidence 355677888888874 7889999999999877655 68899999999999999999864 6889999999999999 6
Q ss_pred hhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC---chhhhhHhhc----------CChHHHHHhhc-CC
Q 009622 149 SEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS---PRCRDLVLSQ----------GGLVPLLAQLN-GQ 213 (530)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~---~~~~~~i~~~----------~~i~~Ll~ll~-~~ 213 (530)
++......+.|++..+..++-. .++..+.+++..++.+..+. |..+-.++.. +.-+..+..+. .+
T Consensus 1843 ~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~ 1922 (2235)
T KOG1789|consen 1843 GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTS 1922 (2235)
T ss_pred cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccC
Confidence 7777777778888888877644 67889999999999997643 3222211110 01122233331 11
Q ss_pred Cchh------HHHHHHHHhhhhcc----CC---CC--------------------------------------CChhhhh
Q 009622 214 PKLS------MLRNATWTLSNFCR----GK---PQ--------------------------------------PPFDQVS 242 (530)
Q Consensus 214 ~~~~------~~~~a~~~L~~L~~----~~---~~--------------------------------------~~~~~~~ 242 (530)
.+++ .+......+..+.. .. +. ....+..
T Consensus 1923 EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~ 2002 (2235)
T KOG1789|consen 1923 ENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLT 2002 (2235)
T ss_pred CCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHH
Confidence 1221 22222222222211 00 00 0011224
Q ss_pred chHHHHHHhhcCCCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009622 243 PALPALAHLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (530)
Q Consensus 243 ~~l~~L~~ll~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 320 (530)
+++..+..++..+++ ........++..+....+...+.+-..|.+|.++..+...+..+-..|++.|..++. +....
T Consensus 2003 ~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~ 2081 (2235)
T KOG1789|consen 2003 ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCC 2081 (2235)
T ss_pred HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHH
Confidence 555566666654432 222333334444555555555556666999999999999888888999999999986 44555
Q ss_pred HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcC
Q 009622 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENA 382 (530)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~ 382 (530)
..+.....+..+++.+... +...--||.+|..+.. ...+.+...++.|++|.|+.+|+..
T Consensus 2082 ~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2082 DAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 6666666666677777653 3444577888888765 4445566677889999999999764
No 82
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=0.00013 Score=72.63 Aligned_cols=328 Identities=16% Similarity=0.205 Sum_probs=207.1
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..+++.+.-+.+.+|.....++.-+........... +.+.+.++++... ..-+..+++.+..+..+.. ..
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~~--i~ 168 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGLG--IE 168 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCcH--Hh
Confidence 45677777777888899888888887655432333332 4677888888777 7889999999999988543 34
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHH-HHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622 154 VVIDHGAVPIFVKLLYSPSDDVRE-QAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~-~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.+.+.+++..|...+.+.....+. .++.+.-..++. ++.....+. ..++.++... .+....++..+..+...+.+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNF-GDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence 556678889999998875444333 333333322221 121111111 1344444444 56677888888777766655
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n 311 (530)
.-+. ..+..++|.++.-+......-...++..++.++...+.+.. ..-..++|.+.+.|.+..+.++..+..++-+
T Consensus 246 ~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 246 CLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 4321 12244455555544444555667788888888877776655 4445899999999999999999999998888
Q ss_pred hhcCCch-hhHHH------------------------------hhcCchHHHHHhhc----CCCchhHHHHHHHHHHHHh
Q 009622 312 IVTGDDM-QTQCV------------------------------IEYQALPCLLNLLS----GNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 312 l~~~~~~-~~~~~------------------------------~~~~~l~~L~~lL~----~~~~~~v~~~a~~~L~nl~ 356 (530)
++.--+. .++.+ ++...+..++.+++ .. +..+++.++.++.|++
T Consensus 322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC 400 (569)
T ss_pred HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence 7642211 11111 11223444444443 33 5678899999999999
Q ss_pred cC--CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009622 357 AG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423 (530)
Q Consensus 357 ~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 423 (530)
.- ++..+..++. .++|.|-..+.+..|++|..+..||+.+...-.... + .+.++.+...+.
T Consensus 401 ~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~---f--~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS---F--DDLIPELSETLT 463 (569)
T ss_pred HhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc---c--cccccHHHHhhc
Confidence 83 4554444443 367777777777789999999999988876432111 1 345555555554
No 83
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=6.4e-06 Score=80.16 Aligned_cols=317 Identities=13% Similarity=0.113 Sum_probs=202.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..+++++..+...|..+++.||..+-+++...+..... .-..+...+.++..+++ ..++. ++..+-.+..+-....
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhcccc
Confidence 36788899999999999999999998887653222221 22445667778777766 55553 4444444443221111
Q ss_pred H-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622 153 K-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 153 ~-~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
+ .+-=.+++|.|-..+...++..|...+.-|..+-. .| ..+.+. -..+++.|+++| .+++.+++..+-.+++++.
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence 1 11113456666666666788888877777766632 22 233332 223677788888 7778888887777777766
Q ss_pred cCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch-hHHHHHHH
Q 009622 231 RGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-VLIPALRT 308 (530)
Q Consensus 231 ~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-~~~~a~~~ 308 (530)
..-. .+........++.++.-+.++++.++..|+.-+..+..-..... ...-+|++..+++++.+.++. ++..+...
T Consensus 237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~ 315 (675)
T KOG0212|consen 237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMV 315 (675)
T ss_pred HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence 5442 22233557788999999999999998887666665554433221 233457888888888877664 44443322
Q ss_pred ---HhHhhcCCchhhHHHhhc-CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622 309 ---VGNIVTGDDMQTQCVIEY-QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 309 ---L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
+..++. .+...+. ++. .+++.+.+.+.++ ..+.|-.+..-+..+-...+.+. ......+++.|+..|.+.+.
T Consensus 316 n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 316 NGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchh
Confidence 222222 1111111 332 4788899999988 88888888755555544333332 22345789999999999999
Q ss_pred hHHHHHHHHHHHhhcCC
Q 009622 385 DIKKEAAWAISNATSGG 401 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~~ 401 (530)
+|...++..+.+++...
T Consensus 392 ~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSS 408 (675)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999999999999854
No 84
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=9e-05 Score=67.19 Aligned_cols=270 Identities=14% Similarity=0.148 Sum_probs=178.3
Q ss_pred HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh-hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009622 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (530)
Q Consensus 204 ~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (530)
..++.++ .+.++.++..|+.-+..++.. +..... .....++.+.+++...++ ...+..++.|++.... ....++
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll 80 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLL 80 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHH
Confidence 4567777 788899999999988888876 222222 235567778888877766 6788899999987654 334455
Q ss_pred HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh--h----cCchHHHHHhhcCCCch-hHHHHHHHHHHHH
Q 009622 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI--E----YQALPCLLNLLSGNYKK-SIKKEACWTVSNI 355 (530)
Q Consensus 283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~--~----~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl 355 (530)
+. ++..++..+.++.+.+...++..++|++...+....... . .|++.......+.+.+. .--...+.+++|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 54 889999999999889999999999999986654433322 2 45666666666555332 2234566777888
Q ss_pred hcCCHHHHHHHHHhCcHH--HHHHHHhcCchhHHHH-HHHHHHHhhcCCCHHHHHHHHHc--CChHHH------------
Q 009622 356 TAGNREQIQAVIEANIIG--PLVALLENAEFDIKKE-AAWAISNATSGGTHEQIKFLVIQ--GCIKPL------------ 418 (530)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~--~L~~ll~~~~~~v~~~-a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L------------ 418 (530)
+.. +..+..+.+...++ .+.. +.+.+..||+. .+..|.|++... ..-..++.. .+++.|
T Consensus 160 s~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 160 SQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred hhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence 653 34444454433322 2222 33345566654 466777877642 222333321 122222
Q ss_pred ---------HhccC-----CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHH
Q 009622 419 ---------CDLLV-----CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIY 483 (530)
Q Consensus 419 ---------~~lL~-----~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~v~ 483 (530)
.++|. .+|+.++...+++|..++.-.. .++.+..-|+...+.++ ..-+++++.
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~------------GRe~lR~kgvYpilRElhk~e~ded~~ 303 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA------------GREVLRSKGVYPILRELHKWEEDEDIR 303 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH------------hHHHHHhcCchHHHHHHhcCCCcHHHH
Confidence 13332 3578899999999987774433 38888899999999988 466999999
Q ss_pred HHHHHHHHHhCC
Q 009622 484 EKSVKLLETYWL 495 (530)
Q Consensus 484 ~~a~~il~~~~~ 495 (530)
+.+.++++-...
T Consensus 304 ~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 304 EACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHh
Confidence 999999887766
No 85
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.48 E-value=5.8e-05 Score=74.20 Aligned_cols=242 Identities=17% Similarity=0.062 Sum_probs=166.1
Q ss_pred CHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.++.++..+. .+++++...++..+.. .. .+. .+..|++.|.+.+ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA---QE-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc---cC-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 5677777774 4566676665555432 11 111 2778889998887 7899999999876443
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
....+.|+.+|.+.++.++..++.+++..- ....+.+..++ ++.+..++..++.++..+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 234577888888888889988887777621 11345777788 688899999999999887653
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
..++.|...+.+.++.|+..+++++..+.. +. .+..+..+...........+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 356667777888899999999999877643 21 223344433333433443333344333
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009622 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 392 (530)
+.+ .+++.|..+++.+ .++..++++++.+-.. ..++.|+..+.+. .++..|..
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGDV-----------EAAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--HHHHHHHH
Confidence 111 4678888888865 4999999999987432 3678888888644 49999999
Q ss_pred HHHHhhcC
Q 009622 393 AISNATSG 400 (530)
Q Consensus 393 aL~nl~~~ 400 (530)
++..++.-
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 99999874
No 86
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00012 Score=74.22 Aligned_cols=283 Identities=19% Similarity=0.197 Sum_probs=170.5
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC
Q 009622 122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201 (530)
Q Consensus 122 v~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~ 201 (530)
-+...+.. +-+|..|+.++..+-+-.++....+ +..+-.+|.+.++-+.-.|+.++-.+|-+.-+ .+ .+
T Consensus 149 k~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerld---LI--Hk 217 (968)
T KOG1060|consen 149 KKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERLD---LI--HK 217 (968)
T ss_pred HHHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHHH---Hh--hH
Confidence 34455555 8888889888888888777776654 34566677777888888888888887744321 11 12
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCC-------------------------C---hhhhhchHHHHHHhh
Q 009622 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP-------------------------P---FDQVSPALPALAHLI 252 (530)
Q Consensus 202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~-------------------------~---~~~~~~~l~~L~~ll 252 (530)
-...+.+++ .+-+.--+..++..|...|+.. +.+ + .....-++...-.++
T Consensus 218 nyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl 296 (968)
T KOG1060|consen 218 NYRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL 296 (968)
T ss_pred HHHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH
Confidence 344555555 3334333444444554444433 111 0 111233455566778
Q ss_pred cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHH
Q 009622 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332 (530)
Q Consensus 253 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L 332 (530)
.+.++.+...++.++.+++-.. ... .++..|+.+|.+. ..++...+..+..++...+... .|.+
T Consensus 297 ~S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF--------~P~l 360 (968)
T KOG1060|consen 297 QSRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLF--------EPHL 360 (968)
T ss_pred hcCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhh--------hhhh
Confidence 8889999999999999987433 122 4567788877654 4566667777776665444222 2333
Q ss_pred HHhhcCCCc-hhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009622 333 LNLLSGNYK-KSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV 410 (530)
Q Consensus 333 ~~lL~~~~~-~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 410 (530)
-..+-.+.+ ..++..=..+|++|+.. +.. .+++.+...+.+.+.++...++.+|+.++.... . +
T Consensus 361 KsFfv~ssDp~~vk~lKleiLs~La~esni~--------~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v 426 (968)
T KOG1060|consen 361 KSFFVRSSDPTQVKILKLEILSNLANESNIS--------EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----V 426 (968)
T ss_pred hceEeecCCHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----h
Confidence 333332213 34555556677777653 211 245566666777766677777777777766321 1 2
Q ss_pred HcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622 411 IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 411 ~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~ 446 (530)
...++..|+.++++.+..|+..+...|..++...+.
T Consensus 427 ~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 427 TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence 234677777777777777777777777777765544
No 87
>PF05536 Neurochondrin: Neurochondrin
Probab=98.47 E-value=0.00042 Score=71.12 Aligned_cols=381 Identities=15% Similarity=0.116 Sum_probs=225.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHh
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIA 145 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~v~~Lv~ll~~~~------~~~i~~~a~~~L~~l~ 145 (530)
.+.+.+..|++.+.+.++.|+-.+.+++...+... .+.+.+.=..+.+-++|.++. ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 67888999999998899999999999988653222 234666655777888888732 2467788888999998
Q ss_pred cCChhhH--HHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009622 146 SGTSEHT--KVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (530)
Q Consensus 146 ~~~~~~~--~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a 222 (530)
. .++.. ..++ +-||.|+..+.+.+. .+...|+.+|..++.. +.-+..+.+.|.++.|...+.+ .+.....+
T Consensus 86 ~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A 159 (543)
T PF05536_consen 86 R-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEIA 159 (543)
T ss_pred C-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence 8 44443 2333 568999999988666 8999999999999944 4568888999999999999944 55667788
Q ss_pred HHHhhhhccCCCCC----ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-HHHHHH----hCcHHHHHHh
Q 009622 223 TWTLSNFCRGKPQP----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIE----AGVFPRLAEF 293 (530)
Q Consensus 223 ~~~L~~L~~~~~~~----~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~----~~~i~~L~~l 293 (530)
+.++.+++...... .......+++.+...+..........++..|..+....+.. ...... ..+...+..+
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 88888877654321 22233456667777776666666777888888876554211 011111 1334445555
Q ss_pred hCCC-CchhHHHHHHHHhHhhcCCc--------h-----hhHHHhhcC------chHHHHHhhcCCCchhH--HHHHHH-
Q 009622 294 LMHP-SPSVLIPALRTVGNIVTGDD--------M-----QTQCVIEYQ------ALPCLLNLLSGNYKKSI--KKEACW- 350 (530)
Q Consensus 294 L~~~-~~~~~~~a~~~L~nl~~~~~--------~-----~~~~~~~~~------~l~~L~~lL~~~~~~~v--~~~a~~- 350 (530)
|.+. .+.-|.+++...+.+..... . ..-.+++.- .++.|......+..+.. +-.+|+
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ 319 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFS 319 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHH
Confidence 6553 45667777766666653211 0 111111110 11111111111100111 111222
Q ss_pred H----HHHHhc--------CCHHHHHHHHH--hCcHHHHHHHHhcC------chhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009622 351 T----VSNITA--------GNREQIQAVIE--ANIIGPLVALLENA------EFDIKKEAAWAISNATSGGTHEQIKFLV 410 (530)
Q Consensus 351 ~----L~nl~~--------~~~~~~~~l~~--~~~i~~L~~ll~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 410 (530)
+ +..++. ..++....+.. .+.+..++++|.+. ++..-..++++|+......+....+.+
T Consensus 320 ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v- 398 (543)
T PF05536_consen 320 ILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV- 398 (543)
T ss_pred HHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH-
Confidence 1 122222 12334444332 23455555555432 333666788888888776554444444
Q ss_pred HcCChHHHHhccCCCCh----------HHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH
Q 009622 411 IQGCIKPLCDLLVCPDP----------RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL 474 (530)
Q Consensus 411 ~~~~l~~L~~lL~~~~~----------~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 474 (530)
.|.++.|+.+...... +.+...+=+|..+... ...+..|...||.+.+.+.
T Consensus 399 -~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e------------~~gr~~l~~~~g~~~l~~~ 459 (543)
T PF05536_consen 399 -YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE------------EEGRKILLSNGGWKLLCDD 459 (543)
T ss_pred -HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc------------HHHHHHHHhCCcHHHHHHH
Confidence 3788888888864322 2344444444444422 2247777778887776653
No 88
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.42 E-value=0.00011 Score=72.38 Aligned_cols=243 Identities=17% Similarity=0.052 Sum_probs=169.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
.++.++..+....++.+...+++++..... +. .+..|+..|.+.++.++..++.+|+.+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--AL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG--------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--hH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC---------
Confidence 578888888544437887777666642211 11 2788999999988889999999998752
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
.......|+.++ .+.++.++..++.++.... ....+.+..+|.+.++.++..++++++.+...
T Consensus 115 --~~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 115 --GRQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred --chHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 122567788888 7788888888887776521 22356788889999999999999999987532
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 277 ~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
..++.|...+.+.++.++..|+..++.+.. + ..+..+....... ....+..+..++...
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA- 236 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence 345667778999999999999999977643 2 2234555534433 333444434444333
Q ss_pred cCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHH
Q 009622 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG 436 (530)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~ 436 (530)
+.+ ..++.|..++.++. ++..++++++.+-.. ..++.|+..++... +...+.++
T Consensus 237 -~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~eA 290 (410)
T TIGR02270 237 -GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGEA 290 (410)
T ss_pred -Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHHH
Confidence 222 36778888887654 999999999977553 35777777776443 88889999
Q ss_pred HHHHHhh
Q 009622 437 LENILKV 443 (530)
Q Consensus 437 l~~ll~~ 443 (530)
+..|.-.
T Consensus 291 ~~~ItG~ 297 (410)
T TIGR02270 291 FSLITGM 297 (410)
T ss_pred HHHhhCC
Confidence 8888643
No 89
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=1.7e-06 Score=83.56 Aligned_cols=281 Identities=17% Similarity=0.246 Sum_probs=186.0
Q ss_pred HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc
Q 009622 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (530)
Q Consensus 112 ~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 191 (530)
+.+..+++.|+++|+.++ ..+..-+...++|..-..+.-...+...|++..|+.++.+.+..++....|.+.++..++.
T Consensus 427 L~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 427 LLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred ccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence 345678899999999877 6777788888999888778888889999999999999999899999999999999986654
Q ss_pred hh-hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC-C-Chhhh------hchHHHHHHhhcCCChhHHHH
Q 009622 192 RC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-P-PFDQV------SPALPALAHLIHSNDDEVLTD 262 (530)
Q Consensus 192 ~~-~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~-~~~~~------~~~l~~L~~ll~~~d~~v~~~ 262 (530)
.. +-..+..-++..++.+. .++.-.++..++..|.|+..+... . ...+. .-+...|++-++..++-....
T Consensus 506 ~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 506 KNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred chhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 32 22344555788899988 888899999999999999875422 1 11111 224455666677777766666
Q ss_pred HHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCC-----------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009622 263 ACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMH-----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (530)
Q Consensus 263 a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~-----------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~ 330 (530)
.+..|.+++..++...+.+. ....+..+..+|.. ....+..+...+..++....+.....+.-. |
T Consensus 585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p 661 (743)
T COG5369 585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---P 661 (743)
T ss_pred hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---C
Confidence 78888887765554444333 23444444444321 112233333333334433322222111100 1
Q ss_pred HHHHhhcC--CCchhHHHHHHHHHHHHhc---C------CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622 331 CLLNLLSG--NYKKSIKKEACWTVSNITA---G------NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 331 ~L~~lL~~--~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
.+-.+=.. ..+.++-.+..|.+.|+.- + +.+.++.+.+.|+-+.|..+...+++.||..+-.||.++
T Consensus 662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 11111111 1134567778888888643 2 236677888888888888888878899999999999887
No 90
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=5.2e-05 Score=68.68 Aligned_cols=268 Identities=17% Similarity=0.141 Sum_probs=165.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
..-++.++.+.+ |.++..|+..+..++.. ..+.+.. .-.++.+.+++....+ .+.|+.+|.|++.+.. .|+
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence 345789999988 99999999999999885 2222222 2457788888877555 7789999999987765 677
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh-------hhhchHHHHHHhhcCC-C-hhHHHHHHHH
Q 009622 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-------QVSPALPALAHLIHSN-D-DEVLTDACWA 266 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-------~~~~~l~~L~~ll~~~-d-~~v~~~a~~~ 266 (530)
.++.. ++..++..+ .++...+....|..|+|+++........ ...+++.....+...+ + ..-..+....
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 77766 777777777 6666778888999999999986322211 1133444444444433 1 1233556667
Q ss_pred HHHhccCChHHHHHHHHhCc--HHHHHHhhCCCCchhH-HHHHHHHhHhhcCCchhhHHHhh--cCchHHHH--------
Q 009622 267 LSYLSDGTNDKIQAVIEAGV--FPRLAEFLMHPSPSVL-IPALRTVGNIVTGDDMQTQCVIE--YQALPCLL-------- 333 (530)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~--i~~L~~lL~~~~~~~~-~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~-------- 333 (530)
+.+++.....+ ..+..... .+.+..+-. .+..+| .-.+.+|.|++.....+- .+++ ..++|.++
T Consensus 156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCccc
Confidence 78887655443 22333222 233444333 344444 345677888776444332 2222 12233322
Q ss_pred -------------HhhcC----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHH
Q 009622 334 -------------NLLSG----NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAIS 395 (530)
Q Consensus 334 -------------~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 395 (530)
++|-. ..++.+|+.-.-+|--+|+. ...++.+...|+.|.+-++-+.. +++++. ++.-+.
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~-ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIRE-ACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHH-HHHHHH
Confidence 33321 12788999999999998875 45667777888888777766555 455555 444444
Q ss_pred Hhhc
Q 009622 396 NATS 399 (530)
Q Consensus 396 nl~~ 399 (530)
++..
T Consensus 311 q~Lv 314 (353)
T KOG2973|consen 311 QMLV 314 (353)
T ss_pred HHHH
Confidence 4444
No 91
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.39 E-value=3e-05 Score=75.29 Aligned_cols=315 Identities=18% Similarity=0.161 Sum_probs=194.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHH
Q 009622 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
+.+...+-+++.+++..|.+.+|.++.. ....+.+.+.++--.++.-|..++ +..-+++|+..+..+..-.. ..+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~- 103 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK- 103 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence 4444455566699999999999999876 567888888886666667776543 35668899999888877421 111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
.+..|++..++.+..+++..++..|+.+|+.++-.+|. .+...|++..+++.+.+ +..++...++.++..+...+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence 12457789999999999999999999999999988874 67889999999999954 444588899999999998875
Q ss_pred CCChhhhhchHHHHHH-hhcC------CCh--hHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCCCCchhHHH
Q 009622 235 QPPFDQVSPALPALAH-LIHS------NDD--EVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMHPSPSVLIP 304 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~-ll~~------~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~~~~~ 304 (530)
.+......--+..+.. +... ++. +....+..++..+...=+........ ...+..|+..|..+++.++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 5543333222332222 2221 122 34455555555554332222111111 146788999999999999999
Q ss_pred HHHHHhHhhcCCc-hhhHHHh------hcCchHHHHHhhc--CCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHH
Q 009622 305 ALRTVGNIVTGDD-MQTQCVI------EYQALPCLLNLLS--GNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGP 374 (530)
Q Consensus 305 a~~~L~nl~~~~~-~~~~~~~------~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~ 374 (530)
.+.++..+..-.. ....... ..|-...-..+.. .+........+ .--.++..+ ..-....+++.|+++.
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL~~~ 338 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNHYLALLLAILIEAGLLEA 338 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHHHHHHHHHHHHHcChHHH
Confidence 9988888764322 1111111 1111100000000 00000000000 000111110 0112234568999999
Q ss_pred HHHHHhcC-chhHHHHHHHHHHHhhc
Q 009622 375 LVALLENA-EFDIKKEAAWAISNATS 399 (530)
Q Consensus 375 L~~ll~~~-~~~v~~~a~~aL~nl~~ 399 (530)
|++++.+. +..+...|...|+.+..
T Consensus 339 L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 339 LVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 99999887 88899999988887654
No 92
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.35 E-value=1e-05 Score=63.74 Aligned_cols=153 Identities=10% Similarity=0.034 Sum_probs=122.6
Q ss_pred chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009622 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407 (530)
Q Consensus 328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 407 (530)
.+..|+.-+....+.+.+.....-|.|++. +|.+...+.+.+++..+++.+...+..+...++.+|||++. ++...+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 345555555555477888888888888865 46777888899999999999999999999999999999998 667888
Q ss_pred HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009622 408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487 (530)
Q Consensus 408 ~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~ 487 (530)
.+.+.+.++.++..++++...++..++.++..+...+.. .+..+-..-.++.++....+.+.+....|.
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-----------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~ 162 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-----------ERDELLSPAVVRTVQRWRESKSHDERNLAS 162 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-----------hhHHhccHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999988888888777765544332 466666677778888877777888888888
Q ss_pred HHHHHhC
Q 009622 488 KLLETYW 494 (530)
Q Consensus 488 ~il~~~~ 494 (530)
..++++-
T Consensus 163 ~fl~~~~ 169 (173)
T KOG4646|consen 163 AFLDKHV 169 (173)
T ss_pred HHHHhhc
Confidence 8887663
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.34 E-value=0.00033 Score=68.38 Aligned_cols=250 Identities=27% Similarity=0.296 Sum_probs=171.9
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.+++.+.+.++.++..|+..+..+... ..++.+..++.+.+ +.++..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~--- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P--- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence 3678899999999999999999997765432 25899999999998 8999999998887664 2
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCc------------hhHH
Q 009622 153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK------------LSML 219 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~------------~~~~ 219 (530)
..++.|+.++. +++..++..+.++|+.+-.. ..+.+++..+. +.. ..++
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~-~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQ-DEDSGSAAAALDAALLDVR 166 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhc-cchhhhhhhhccchHHHHH
Confidence 34678888888 58899999999999987321 13677777773 322 1234
Q ss_pred HHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc
Q 009622 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299 (530)
Q Consensus 220 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 299 (530)
..+...+..+-. ....+.+..++...+..++..+..+++.+.... ..+.+.+...+.+.++
T Consensus 167 ~~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~ 227 (335)
T COG1413 167 AAAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESL 227 (335)
T ss_pred HHHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCH
Confidence 444444444332 334667777787777888888888888776544 2345677778888888
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009622 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 300 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 379 (530)
.++..++..++.+... ..+..+...+... +..++..+...+... .. ......+...+
T Consensus 228 ~vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~ 284 (335)
T COG1413 228 EVRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLL 284 (335)
T ss_pred HHHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHh
Confidence 8888888888876542 2355666777766 655555544444311 10 01234455556
Q ss_pred hcCchhHHHHHHHHHHHhhcC
Q 009622 380 ENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 380 ~~~~~~v~~~a~~aL~nl~~~ 400 (530)
.+.+..++..+..++......
T Consensus 285 ~~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 285 IDEANAVRLEAALALGQIGQE 305 (335)
T ss_pred hcchhhHHHHHHHHHHhhccc
Confidence 666677777777777776654
No 94
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.32 E-value=0.00025 Score=69.00 Aligned_cols=318 Identities=15% Similarity=0.080 Sum_probs=193.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChh
Q 009622 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFD 239 (530)
Q Consensus 161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~ 239 (530)
.+.+..++-+++.+++..+.+++..+..+... -..+.+.+.-..++.-+.. ..+..=+.+|+..+..+...... ...
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence 34444444445599999999999998887764 4455565554445555533 23445567888888888776422 223
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 319 (530)
.-.+++..++.+..+.++..+..++.+++.++-.+++ .+...|++..|.+.+.++...+....+.++..+.. .+..
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRT 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccch
Confidence 4577888999999999999999999999999877664 46788999999999988766677888888888876 4444
Q ss_pred hHHHhhcCchHHHHHhhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHHHHHHHhcCchhHHHHH
Q 009622 320 TQCVIEYQALPCLLNLLSGN------YKK--SIKKEACWTVSNITAGNREQIQAVIEA-NIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a 390 (530)
++.+...--++.++.-+.+. .+. +.-..+..++..+...=+..+-...+. ..+..|+..|..+.+++|...
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 44444433344444444332 022 233444555555544211111111121 468889999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHH------HcCChHHHHhccC--CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHh
Q 009622 391 AWAISNATSGGTHEQIKFLV------IQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI 462 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l~------~~~~l~~L~~lL~--~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~ 462 (530)
+..+..+..-..+....... ..|-...-.++.. .+.......--..-.+++..... -..-.|
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a----------Lll~il 330 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA----------LLLAIL 330 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH----------HHHHHH
Confidence 99999998755433222211 1111100000000 00000000000000011111110 134557
Q ss_pred hhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Q 009622 463 DDAEGLEKIESLQTHD-NAEIYEKSVKLLETYW 494 (530)
Q Consensus 463 ~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~ 494 (530)
.++|.++.|.++.... ++.+..+|.-++.+++
T Consensus 331 i~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 331 IEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 7799999999997665 9999999999988764
No 95
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.0024 Score=58.64 Aligned_cols=277 Identities=16% Similarity=0.110 Sum_probs=183.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc--hhhh--hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP--RCRD--LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~--~~~~--~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
+..+.|-.-|..++..++..++..++.|..+++ .... .++..++++.++..+ ...|.++...+...+..++..+.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-ggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcHH
Confidence 445666677777888899999999999987776 2222 344788899999999 78889999999999999988753
Q ss_pred CCChhhhhchHHH--HHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhH
Q 009622 235 QPPFDQVSPALPA--LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGN 311 (530)
Q Consensus 235 ~~~~~~~~~~l~~--L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~n 311 (530)
.....+....+.. +..+-...+.-++...+..+..+.+-++.......++|++..|..-|+. .+.-++..++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 3333332333221 2223333455667777888888888787777878888999988887776 566788888888888
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcC------CHHHH-HHHHHhCcHHHHHHHHhcCc
Q 009622 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAG------NREQI-QAVIEANIIGPLVALLENAE 383 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~------~~~~~-~~l~~~~~i~~L~~ll~~~~ 383 (530)
++. ..+..+.+.+.|++..+..++.... +|--+..+....+.+... +++.+ ..++ -.+...++++...|
T Consensus 241 Lae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnD 317 (524)
T KOG4413|consen 241 LAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMND 317 (524)
T ss_pred HHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCC
Confidence 875 4555667778899999999997542 444444455555554431 22221 1111 13556667778889
Q ss_pred hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC--hHH-HHhccCCCChHHHHHHHHHHHHHH
Q 009622 384 FDIKKEAAWAISNATSGGTHEQIKFLVIQGC--IKP-LCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 384 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~--l~~-L~~lL~~~~~~v~~~al~~l~~ll 441 (530)
++.+..|..+++.+-... +....+...|- ... +.+..+.+...-+..++.+|.++.
T Consensus 318 pdaieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 318 PDAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred chHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 999999999999987743 44444444443 222 233333332223445555555554
No 96
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0009 Score=67.35 Aligned_cols=297 Identities=13% Similarity=0.136 Sum_probs=180.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.+..+.+-|.|.|+..+..|++++.++.+. +..+.+. .. ++ ++|-+++ .+-++..|+.||..+-..+++..
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~-~D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~ 183 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFA-DD-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV 183 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhh-hh-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc
Confidence 344555566788898899999999988654 2222221 12 33 5555544 35788999999999998766532
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc----------------CCCch
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----------------GQPKL 216 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~----------------~~~~~ 216 (530)
. ..+....++++|.+.+-.+...+...+.-|+...|+.-. ++++.-+..|. .-+.+
T Consensus 184 ~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTyy~vP~P 255 (938)
T KOG1077|consen 184 N---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAP 255 (938)
T ss_pred C---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhceeecCCCh
Confidence 2 235678889999887777778888888888766554322 22222222221 11345
Q ss_pred hHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC----CC---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 009622 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----ND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289 (530)
Q Consensus 217 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~----~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~ 289 (530)
-+...++..|.++-.............++..++...+. .+ ......++.-..+++..-+..-..+. ..+..
T Consensus 256 WL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~ 333 (938)
T KOG1077|consen 256 WLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQ 333 (938)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHH
Confidence 66777777777662222222222333344444333331 11 11122223323333322221112222 45778
Q ss_pred HHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 009622 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIE 368 (530)
Q Consensus 290 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~ 368 (530)
|-++|.+.+..+|.-|+..++.+++..... +.+-.+ .+.++..|+...|..+|+.|...|-.+|.. +..
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak------- 403 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFSI-DAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK------- 403 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccchH-HHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHH-------
Confidence 999999999999999999999999864322 233222 788888998555899999999999999873 322
Q ss_pred hCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 369 ANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 369 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.++..|++.+.+.++.+|++...=+.-++.
T Consensus 404 -~IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 404 -QIVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred -HHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 256678888888888888877655554443
No 97
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0027 Score=64.05 Aligned_cols=325 Identities=17% Similarity=0.142 Sum_probs=189.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
-+-+++|.++--...+.+--.+.-++..+ .+..+. ++..+-+=|.+.+ +.....|+.+++|+.+ -+.+..+
T Consensus 77 mEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~ 147 (938)
T KOG1077|consen 77 MEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAF 147 (938)
T ss_pred HHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHh
Confidence 34556666644333333433344333221 233333 2344555555666 7888999999999886 4454444
Q ss_pred HhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622 156 IDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 156 ~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
. .-|+ ++|-+ ...-++..++.+|..|-...|.. +-..+....++.+| ++.+-.+..++...+..|+...
T Consensus 148 ~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~ 218 (938)
T KOG1077|consen 148 A--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKN 218 (938)
T ss_pred h--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcC
Confidence 3 1234 55544 33568888888998888776642 33345678889999 6666777777788887787765
Q ss_pred CCCChhhhhchHHHHHHhhc-------------CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC---
Q 009622 234 PQPPFDQVSPALPALAHLIH-------------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--- 297 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~-------------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--- 297 (530)
+..-.......+..|..... -+.|.++...++.|.++-...+.-.. ..-..+++.++...+..
T Consensus 219 p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~~ 297 (938)
T KOG1077|consen 219 PESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPKS 297 (938)
T ss_pred CHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCccc
Confidence 43322222223333322221 13577888888888887432221111 11113444444444321
Q ss_pred -C---chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009622 298 -S---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373 (530)
Q Consensus 298 -~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 373 (530)
+ .......+.-.-+++..-+..-+.+ ...+..|-.+|.+. +..+|.-|...++.++...+ ....+-.. ..
T Consensus 298 k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~-s~davK~h--~d 371 (938)
T KOG1077|consen 298 KKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHR-ETNIRYLALESMCKLASSEF-SIDAVKKH--QD 371 (938)
T ss_pred cchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcc-cccchhhhHHHHHHHHhccc-hHHHHHHH--HH
Confidence 1 1122222333334443333222222 24577888888888 88999999999998887522 22222222 66
Q ss_pred HHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009622 374 PLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 433 (530)
Q Consensus 374 ~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~a 433 (530)
.++..|+ ..|..+|+.|+..|..++...+.+. ++..|++.|..-|+.+++-.
T Consensus 372 ~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--------IV~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 372 TIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--------IVAELLQYLETADYSIREEI 424 (938)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------HHHHHHHHHhhcchHHHHHH
Confidence 7788888 5689999999999999998654332 45667777777777766643
No 98
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.20 E-value=4.1e-06 Score=53.08 Aligned_cols=41 Identities=41% Similarity=0.674 Sum_probs=38.0
Q ss_pred CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 359 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
++++++.+++.|++|.|+.+|.+++++++++|+|+|.|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 99
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.20 E-value=3.5e-06 Score=53.41 Aligned_cols=41 Identities=41% Similarity=0.863 Sum_probs=38.1
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC
Q 009622 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~ 188 (530)
++++++.+++.|++|.|+++|++.+.++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 100
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.19 E-value=0.0045 Score=62.06 Aligned_cols=347 Identities=16% Similarity=0.138 Sum_probs=198.0
Q ss_pred HHHHHhhcCCCh---HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 76 PVMVAGVWSNDS---GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 76 ~~l~~~l~s~~~---~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
|.++..|.++++ ......+.+|..++.. .+-.+.++ ..++..+........+.+....++.+|..+.....+..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 566667765544 4566778888887644 23333322 24555555555444346777778888888766432222
Q ss_pred -----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---------
Q 009622 153 -----KVVIDHGAVPIFVKLLYS-----P--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------- 211 (530)
Q Consensus 153 -----~~~~~~g~i~~L~~lL~~-----~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--------- 211 (530)
....+..+++.+....-. . +..+.+.+...+..+...-+.-++.- .+..+..+..
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence 223333477777776632 1 24566666666666665444322221 1223333321
Q ss_pred --CC----CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccC--ChHHHHHHH
Q 009622 212 --GQ----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDG--TNDKIQAVI 282 (530)
Q Consensus 212 --~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~--~~~~~~~~~ 282 (530)
.. .......-...+++.+- +.........++..++.+..+ .++..+..++.+++.++.. .++...
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--- 228 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLR---KDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--- 228 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCC---cccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence 00 11112222223333332 333322344577777776554 4577788888888888754 222222
Q ss_pred HhCcHHHHHHhh-CCCCchhHHHHHHHH----hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 283 EAGVFPRLAEFL-MHPSPSVLIPALRTV----GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 283 ~~~~i~~L~~lL-~~~~~~~~~~a~~~L----~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+++..+...+ .......+..++.++ -.+........ ..++..|+.++.+ +.+...|+..++-+..
T Consensus 229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~---~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS---PELGQQAAKAFGILLS 298 (415)
T ss_pred --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence 3344444444 233344444444444 33332222222 2346678888875 5778888888888877
Q ss_pred CCHH--------HHHHHHHh----CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009622 358 GNRE--------QIQAVIEA----NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 425 (530)
Q Consensus 358 ~~~~--------~~~~l~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 425 (530)
..++ .++.+.+. .++|.|++.....+...+...+.||.++..+........ .-..+++.|++.|+.+
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~ 377 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP 377 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC
Confidence 6333 23333332 357788887777777799999999999999765333222 1235788899999999
Q ss_pred ChHHHHHHHHHHHHHHhhhhh
Q 009622 426 DPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 426 ~~~v~~~al~~l~~ll~~~~~ 446 (530)
|++++..++.+|..++...+.
T Consensus 378 ~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 378 DADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred CHHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999877643
No 101
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.18 E-value=1.8e-05 Score=62.40 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=100.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
+.+..|+.-.....+.+.+++...-|+|.+. +|.+...+.+..++..++.-|..++..+++.++..|+|+|.+.. ..+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 3456666655554448999999999999998 78888899999999999999999999999999999999998876 677
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
.+.+.++++.++..+ .++...+..+++.++..|+.+.
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 888999999999999 8888888999999999999876
No 102
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=7.1e-05 Score=74.46 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=153.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH---HHhhhhccCC---CCCC
Q 009622 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGK---PQPP 237 (530)
Q Consensus 164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~---~~L~~L~~~~---~~~~ 237 (530)
|..+..+.+..++.+|+.+|..|.... ...+. .....++++ .+.+..++..|+ |.++|.+-.+ ....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 566666667777777777766665422 12222 344556777 777888888874 5555555221 1222
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC--
Q 009622 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-- 315 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~-- 315 (530)
......++..+...+..-.-.|+..+..+|+.+...+++.+...++..++..+-..-... -+-..+..=|..++|
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCcc
Confidence 334456677777888777888899999999988777777776666655444222110000 011111111111111
Q ss_pred ---------CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009622 316 ---------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386 (530)
Q Consensus 316 ---------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 386 (530)
.++....++.+|+-..++.-|.++ -.+||+.|...++.++...|..... .+..|++++++....|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVV 426 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHH
Confidence 223444577888888888888877 7899999999999999876654333 4668999999888899
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009622 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~ 431 (530)
|..|..+|..++.+.. ++...++.++..|.+..++++.
T Consensus 427 RL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe 464 (823)
T KOG2259|consen 427 RLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVRE 464 (823)
T ss_pred HHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999987642 1222344444555554544444
No 103
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00089 Score=67.89 Aligned_cols=326 Identities=14% Similarity=0.111 Sum_probs=174.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChH
Q 009622 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV 204 (530)
Q Consensus 125 l~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~ 204 (530)
|++++ .-+|-..++.|+.+-. ++... ..+|.+...|.+.+.-+|.+|..++..|-..... . -.++-.
T Consensus 108 LQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L--~pDape 174 (948)
T KOG1058|consen 108 LQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---L--IPDAPE 174 (948)
T ss_pred ccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---h--cCChHH
Confidence 34444 5566666666655543 33322 4578888999999999999999998888543211 1 112233
Q ss_pred HHHHhhcCCCchhHHHHHHHHhhhhc---------cCC---CCC------------------ChhhhhchHHHHHHhhcC
Q 009622 205 PLLAQLNGQPKLSMLRNATWTLSNFC---------RGK---PQP------------------PFDQVSPALPALAHLIHS 254 (530)
Q Consensus 205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~---------~~~---~~~------------------~~~~~~~~l~~L~~ll~~ 254 (530)
.+-..|....|+...++|...|...- ... +.- ........+..+..+|.+
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~s 254 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSS 254 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhc
Confidence 33344445566666666655443221 110 000 000112233444455555
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHH
Q 009622 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL 333 (530)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~ 333 (530)
.++.++..+..+|..++..+... .. ....++.++.. ++..+..-.+.-|..+...+.. + -.|++--++
T Consensus 255 tssaV~fEaa~tlv~lS~~p~al-k~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~----i-l~~l~mDvL 323 (948)
T KOG1058|consen 255 TSSAVIFEAAGTLVTLSNDPTAL-KA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK----I-LQGLIMDVL 323 (948)
T ss_pred CCchhhhhhcceEEEccCCHHHH-HH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH----H-HHHHHHHHH
Confidence 55555555555555554433221 11 11222222221 1222222223333333321111 1 124455567
Q ss_pred HhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009622 334 NLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 412 (530)
Q Consensus 334 ~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 412 (530)
.+|.++ +-++|+.+......++. .+.+.+-.+++..+...--. =...+.+.|+.-..++..++..- ++...
T Consensus 324 rvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~F-p~~aa----- 395 (948)
T KOG1058|consen 324 RVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKF-PEVAA----- 395 (948)
T ss_pred HHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcC-hHHHH-----
Confidence 788888 99999999888777776 45554444443322221111 01124567888888888887753 34333
Q ss_pred CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHH-HHHHhcCCCHHHHHHHHHHHH
Q 009622 413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQTHDNAEIYEKSVKLLE 491 (530)
Q Consensus 413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~~~~~v~~~a~~il~ 491 (530)
.+++.|++.+.+.++......+..+...++..++.. ..+ +++ ++.+-.-....++.-|.+|+-
T Consensus 396 tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-----------~~i-----i~~l~~~~~~irS~ki~rgalwi~G 459 (948)
T KOG1058|consen 396 TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-----------ASI-----IEKLLETFPQIRSSKICRGALWILG 459 (948)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-----------HHH-----HHHHHHhhhhhcccccchhHHHHHH
Confidence 468899999999998877777777777776665422 111 222 233344466777888888888
Q ss_pred HhCCCCC
Q 009622 492 TYWLDDE 498 (530)
Q Consensus 492 ~~~~~~~ 498 (530)
.|.+.+.
T Consensus 460 eYce~~~ 466 (948)
T KOG1058|consen 460 EYCEGLS 466 (948)
T ss_pred HHHhhhH
Confidence 8876555
No 104
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0012 Score=72.03 Aligned_cols=317 Identities=17% Similarity=0.179 Sum_probs=189.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh--
Q 009622 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-- 193 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~-- 193 (530)
.+||.|.++=-+++ +.+|..-..+...+..++....+... ..++.-|+.-|.+..+++|+.++.+|..|..+.+..
T Consensus 998 kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 46888888877787 89998888888888886555555544 356777888888888999999999999999776531
Q ss_pred hhhHhhcCChHHHHHhhcCCCchhHHHH---HHHHhhhhccCC-----CCCChhhhhchHHHHHH-hhcCCChhHHHHHH
Q 009622 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRN---ATWTLSNFCRGK-----PQPPFDQVSPALPALAH-LIHSNDDEVLTDAC 264 (530)
Q Consensus 194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~---a~~~L~~L~~~~-----~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~ 264 (530)
.+.+. .....+.+.. ++-.+.++.. ++.+++.+|-.. +.........++|.|+. .+-+.-++++.-++
T Consensus 1076 ~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1076 KEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred HHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 22222 1333344444 4445555554 455566555433 12223344556665543 22255688999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhH-----------HHHHHHHh-HhhcCCchh--hHHH-------
Q 009622 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL-----------IPALRTVG-NIVTGDDMQ--TQCV------- 323 (530)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~-----------~~a~~~L~-nl~~~~~~~--~~~~------- 323 (530)
.++..++......+..... .+++.|+...+.-++.+. ..|+..+. +.+.+++.. ....
T Consensus 1153 ~tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred HHHHHHHHhchhhhcchhh-HHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence 9999999876654443322 566666666665544432 22222221 122222211 1111
Q ss_pred hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009622 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
+-...+|.+.++++.+-.-..|..++..++-++.......... -..++..++..+++.++.+++.-..|.+.++....+
T Consensus 1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence 1135677788888776455666677777776654211111011 112466777777888899999999999999998888
Q ss_pred HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622 404 EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 404 ~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
++.+.+++. .+..++...++ ....++..+.+|..+.
T Consensus 1311 dq~qKLie~----~l~~~l~k~es-~~siscatis~Ian~s 1346 (1702)
T KOG0915|consen 1311 DQMQKLIET----LLADLLGKDES-LKSISCATISNIANYS 1346 (1702)
T ss_pred HHHHHHHHH----HHHHHhccCCC-ccchhHHHHHHHHHhh
Confidence 888876432 23333332222 1144555555555444
No 105
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.16 E-value=0.00057 Score=66.68 Aligned_cols=215 Identities=26% Similarity=0.340 Sum_probs=152.5
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
..++.+.+++.+.+ +.++..|++.++.+.. .-+++.+..++.+.++.++..++.+|+.+- .+
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~---- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP---- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch----
Confidence 35888999999987 8999999999766554 235789999999999999999999998872 22
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh------------hHHHHH
Q 009622 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD------------EVLTDA 263 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~------------~v~~~a 263 (530)
..++.++.++..+.+..++..+.++|..+-... .+..++..+..... .++..+
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 267889999955789999999999999886642 25555666655442 233334
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchh
Q 009622 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343 (530)
Q Consensus 264 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 343 (530)
...++.+.. ...++.+...+.+....++..+..+++.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 444433321 134566777777777788888888888877644 23456777777777 888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHH
Q 009622 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS 395 (530)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 395 (530)
+|..++..++.+-... .++.++..+...+..++..+..++.
T Consensus 229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 229 VRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhc
Confidence 8888888887774321 4556677777777666666665555
No 106
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00013 Score=72.54 Aligned_cols=220 Identities=14% Similarity=0.122 Sum_probs=145.9
Q ss_pred HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---h--HH-HH
Q 009622 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---N--DK-IQ 279 (530)
Q Consensus 206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---~--~~-~~ 279 (530)
+..+. .+.|..++..|+.++..|..+.. ....+....++++..++..|+..|+..+.-..... . +. ..
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~k-----L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGFK-----LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhccccc-----ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 77788888999988888877431 22345566778888888999998865554443221 1 11 11
Q ss_pred HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH--hc
Q 009622 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI--TA 357 (530)
Q Consensus 280 ~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~ 357 (530)
.+.+ .++..+...+.+.++.+|..|..+||.+-.-+++.....++..++..+-..-... +......++- .+
T Consensus 277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSs 349 (823)
T KOG2259|consen 277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSS 349 (823)
T ss_pred hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCccc
Confidence 2233 5778899999999999999999999998876666655555443333222111111 1111111111 11
Q ss_pred C-----------CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC
Q 009622 358 G-----------NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD 426 (530)
Q Consensus 358 ~-----------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~ 426 (530)
| ..+.-..++..|.--.++.-+.+.=.+||+.|+..++.++... |.+... .+..|++++.++.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHH
Confidence 1 1122334566777778888888777899999999999999853 333322 5889999999999
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 009622 427 PRIVTVCLEGLENILKVG 444 (530)
Q Consensus 427 ~~v~~~al~~l~~ll~~~ 444 (530)
..|+..++.+|..|....
T Consensus 424 ~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988764
No 107
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.13 E-value=0.00025 Score=64.53 Aligned_cols=239 Identities=16% Similarity=0.130 Sum_probs=147.7
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHH
Q 009622 246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCV 323 (530)
Q Consensus 246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~ 323 (530)
..|-++++.-++-.+.-|..++.++....+.+.....+...-.+++.++++. ...++...+.++.-+.. +++..+.+
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi 230 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDI 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHH
Confidence 3344445444555666677888887765554433333444556777777763 45788888888887775 44343222
Q ss_pred hh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhC-cHHHHHHHHhcC--chhHHHHHHHHHHHhh
Q 009622 324 IE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEAN-IIGPLVALLENA--EFDIKKEAAWAISNAT 398 (530)
Q Consensus 324 ~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~-~i~~L~~ll~~~--~~~v~~~a~~aL~nl~ 398 (530)
-+ ...+.-++.+.+..-...|-+-+|.++.|++.. ....+..+.-.| +.+..--++... |.+++...-..=..+.
T Consensus 231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 11 234566666666553667888899999999883 334444444334 555444444333 4555443322222111
Q ss_pred cCC-----------------------------CHHHHHHHHHc--CChHHHHhccCCCChH-HHHHHHHHHHHHHhhhhh
Q 009622 399 SGG-----------------------------THEQIKFLVIQ--GCIKPLCDLLVCPDPR-IVTVCLEGLENILKVGEA 446 (530)
Q Consensus 399 ~~~-----------------------------~~~~~~~l~~~--~~l~~L~~lL~~~~~~-v~~~al~~l~~ll~~~~~ 446 (530)
... -......+... .++..|..+++.+++. ....|+.-+..+++..+.
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 100 11233444433 3467777888776665 555677777777766654
Q ss_pred hhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009622 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
....+...|+-+.|.+|++|+|++|+--|.+.++.+.++
T Consensus 391 -----------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 391 -----------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred -----------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 477788899999999999999999999999998887654
No 108
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.11 E-value=0.0007 Score=68.02 Aligned_cols=265 Identities=17% Similarity=0.133 Sum_probs=169.1
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009622 94 TTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL---------LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (530)
Q Consensus 94 ~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll---------~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 164 (530)
+.+|+- ++.+ ......++....+..|.++- ....++.+..+|++||+|+...++..+..+++.|..+.+
T Consensus 2 L~~LRi-LsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRI-LSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHH-HccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 344553 3443 33444555444566666655 233348999999999999999999999999999999999
Q ss_pred HHhhCCC-----CHHHHHHHHHHHHhhhCCCchhhhhHhhc-CChHHHHHhhc---------CC-------CchhHHHHH
Q 009622 165 VKLLYSP-----SDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPLLAQLN---------GQ-------PKLSMLRNA 222 (530)
Q Consensus 165 ~~lL~~~-----~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-~~i~~Ll~ll~---------~~-------~~~~~~~~a 222 (530)
+..|+.. +.++.-...++|--++...+..+..+.+. +++..++..+. .. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999875 67788888888887777777777666554 56666666552 01 245567778
Q ss_pred HHHhhhhccCCCCCCh----hhhhchHHHHHHhh---cC--CChhHHHHHHHHHHHhccCChHH-----------HHHHH
Q 009622 223 TWTLSNFCRGKPQPPF----DQVSPALPALAHLI---HS--NDDEVLTDACWALSYLSDGTNDK-----------IQAVI 282 (530)
Q Consensus 223 ~~~L~~L~~~~~~~~~----~~~~~~l~~L~~ll---~~--~d~~v~~~a~~~l~~l~~~~~~~-----------~~~~~ 282 (530)
+.++.|+....+.... .....++..+..++ .+ +.......++.+|.++--..... .....
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 8888998877644333 22334444444442 11 12456677777777763211111 00011
Q ss_pred HhCcHHHHHHhhCC----C----CchhHHHHHHHHhHhhcCCchhhHHHh----------------hcCchHHHHHhhcC
Q 009622 283 EAGVFPRLAEFLMH----P----SPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSG 338 (530)
Q Consensus 283 ~~~~i~~L~~lL~~----~----~~~~~~~a~~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~ 338 (530)
....+..|+.+|.. . -.....+.+.+|.+++..+...++.+- ...+-..|+.++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 12345666666543 1 135778889999999887654444332 12466778888888
Q ss_pred CCchhHHHHHHHHHHHHhcCCHH
Q 009622 339 NYKKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~~~~~ 361 (530)
. .+.++..++..+-.+|..+..
T Consensus 320 ~-~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 320 P-DPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred C-CchHHHHHHHHHHHHHhhhHH
Confidence 8 588888888888888765544
No 109
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00016 Score=72.85 Aligned_cols=264 Identities=18% Similarity=0.217 Sum_probs=153.2
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
+...|.+.|++.+++.+++-++.-|+-..-++... .+...|-..|..++.-.-+.|...++-+.-++..
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~---- 482 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN---- 482 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----
Confidence 44455555555544556666555554444332211 1124445555555444555555555544332221
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH--HhccCC
Q 009622 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS--YLSDGT 274 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~--~l~~~~ 274 (530)
..++..++..-.......+.+...--++-...+. ..+.=+.+-.++.+.|+-++.....++. +.....
T Consensus 483 ---~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn 552 (929)
T KOG2062|consen 483 ---QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN 552 (929)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence 1123334444433334445444333332222221 1234455667777788888777665543 332222
Q ss_pred hHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622 275 NDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 275 ~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
. +++..|+.. +++.+.++++.|+.+||-++..++++ ++..+.+|..++++.||..++.+|+
T Consensus 553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence 2 556777777 67789999999999999999877755 5677788887779999999999999
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChH
Q 009622 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR 428 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 428 (530)
-.|+++... ..+..|-.+..++..-||+.|+.++.-+....++..+... .++.+.+.+.+.+++.+
T Consensus 615 IaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 615 IACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHED 680 (929)
T ss_pred hhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhH
Confidence 999864321 1334444555666778999999999988775543333321 23455555555555444
No 110
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00029 Score=76.62 Aligned_cols=336 Identities=12% Similarity=0.116 Sum_probs=194.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCC-CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CChhhHH
Q 009622 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTK 153 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~ 153 (530)
..+...+.+.+|..+..++..|..+...-. .+.+.. ....+...+.++|.+.+ .-.|.-|.+-|+-+-. ++....+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l-~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVL-MLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhh-ccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence 444456678999998877765554443321 233322 22345688899998877 7788888877665433 2333443
Q ss_pred HHHhCCChHHHHHhhCC---------CCHHHHH-------------HHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009622 154 VVIDHGAVPIFVKLLYS---------PSDDVRE-------------QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~---------~~~~~~~-------------~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~ 211 (530)
.+ +..|+.-|-. .+.++.+ ..-.=|+|||.+-. +...+-.++++.+
T Consensus 899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLAN 966 (1702)
T ss_pred HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhh
Confidence 33 3344444321 1111111 11122444443221 1123445566664
Q ss_pred CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009622 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (530)
Q Consensus 212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 291 (530)
.+-.-.-+.-|++-+..++.............++|.|...=.+++..|+......-..+..++...+..... .+++.|+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL 1045 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELL 1045 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHH
Confidence 444455556666677777766544444455677777777777788888665444444444444444443443 7888888
Q ss_pred HhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHH---HHHHHHHhc--CC---HHHH
Q 009622 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA---CWTVSNITA--GN---REQI 363 (530)
Q Consensus 292 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a---~~~L~nl~~--~~---~~~~ 363 (530)
.-+.+..|.+|+.+|.+|..+..+.+.....-.-..+...+...+++- ...||+.| +.+|+.++. .+ ....
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 999999999999999999999998763321111114455556666655 66777654 566666664 11 1112
Q ss_pred HHHHHhCcHHHHHH--HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009622 364 QAVIEANIIGPLVA--LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431 (530)
Q Consensus 364 ~~l~~~~~i~~L~~--ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~ 431 (530)
+..++ .++|.|++ ++ +.-.+||+-++.++..++.........++ ...++.|.+..+.-++.+..
T Consensus 1125 ~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLn 1190 (1702)
T KOG0915|consen 1125 KEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLN 1190 (1702)
T ss_pred HHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHH
Confidence 22222 35666655 23 45689999999999999986543322222 24577777777766666554
No 111
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.09 E-value=0.00016 Score=65.84 Aligned_cols=229 Identities=15% Similarity=0.173 Sum_probs=153.6
Q ss_pred hhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhh-
Q 009622 124 FLLREDYPQLQFEAAWALTNIASGTSEHTKVVID-HGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLS- 199 (530)
Q Consensus 124 ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~- 199 (530)
+++.-+ +-.+.-|+.|+.++.. .++.|...-. ...-..+..+++. ....++...+.+++-+..... +.+.+-.
T Consensus 157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~ 233 (432)
T COG5231 157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKM 233 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence 444444 5678889999999998 5666665543 3344567777766 557889999999998875543 4433222
Q ss_pred cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCC
Q 009622 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~ 274 (530)
...+.-+++++.......+.+-++.++.|++...|.... .....+.++.-.+++. .|++++.+.-..=..+....
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 235666777776666888999999999999985433221 2223355554444443 36666555433322222111
Q ss_pred h------------------------------HHHHHHHH--hCcHHHHHHhhCCCCch-hHHHHHHHHhHhhcCCchhhH
Q 009622 275 N------------------------------DKIQAVIE--AGVFPRLAEFLMHPSPS-VLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 275 ~------------------------------~~~~~~~~--~~~i~~L~~lL~~~~~~-~~~~a~~~L~nl~~~~~~~~~ 321 (530)
. .+...+.+ ..++..|.++++..++. ....||.-++.++...|+...
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 1 01122221 14677888888887766 667788899999999999988
Q ss_pred HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
.+.+.|+=..++.++.++ +++|+.+|..++..+.
T Consensus 394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 888999999999999999 9999999999887654
No 112
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.05 E-value=0.00014 Score=77.17 Aligned_cols=268 Identities=15% Similarity=0.119 Sum_probs=173.5
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---hh
Q 009622 75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---SE 150 (530)
Q Consensus 75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~---~~ 150 (530)
++.+...++. ...+.+..|+..|..+...-..+ ..-..++|.++.++.++. ..+|..|+.+|+.+...- +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----VKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----HHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4455555554 45677888999998886543211 112457999999999988 999999999998877622 22
Q ss_pred hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC------------------chh-----------hhhHhhc
Q 009622 151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS------------------PRC-----------RDLVLSQ 200 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~------------------~~~-----------~~~i~~~ 200 (530)
.-..++..-++|.|-.++.+ ....++-.-+..|+.||... +.. ...+. .
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~ 577 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-H 577 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-H
Confidence 22334445678888888877 44445554455555554211 100 00000 0
Q ss_pred CChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH
Q 009622 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280 (530)
Q Consensus 201 ~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 280 (530)
++-.....++ .++++-+++..+..|.-||.... ......-+++.|..+|...|..++..-...|..++-.-.. .
T Consensus 578 ~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---r 651 (1431)
T KOG1240|consen 578 TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---R 651 (1431)
T ss_pred HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---e
Confidence 1112223334 55566777777777777775431 1122345688888999888888888777777665532111 1
Q ss_pred HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 281 ~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
-++..++|.|.+-|.+.++.+...|+.++.-|+...--....+ ..+++....+|-++ +.-+|..++.+|..++.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 1344778999999999999999999999999886433222222 24677788888898 99999999999888775
No 113
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.05 E-value=1e-05 Score=55.21 Aligned_cols=55 Identities=24% Similarity=0.610 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622 342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
+.+|..|+|+|++++...+....... ..+++.|+.++.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999888777776644 46999999999999899999999999875
No 114
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0067 Score=63.82 Aligned_cols=339 Identities=16% Similarity=0.138 Sum_probs=196.4
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc------CCC-CHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHH
Q 009622 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL------RED-YPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPI 163 (530)
Q Consensus 93 a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~------~~~-~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~ 163 (530)
|...+..+++..+.... .|+++.+++.+. .++ ++.-+..|+++++++++-- ....+...+.=+++.
T Consensus 392 a~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 392 ALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 45555555544222222 356777778777 222 4667788888888888510 111112222234556
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hh
Q 009622 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQ 240 (530)
Q Consensus 164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~ 240 (530)
+.-.++++.--+|..|+|.++.++... +.+...-..++....+.+.++.+-.++..|+.+|..+.++.+.... ..
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 666778888889999999999998433 2222223336677777775688889999999999999888754433 33
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC---CCc---hhHHHHHHHHhHhh
Q 009622 241 VSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH---PSP---SVLIPALRTVGNIV 313 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~---~~~~~a~~~L~nl~ 313 (530)
+.+.+..|+++.+..+.+.+..++..+ +..+..-......+. ..+.....+++.. .++ .-...|.++|..+.
T Consensus 545 vp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~ 623 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTIS 623 (1010)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Confidence 456666677777766655555555444 222221111111111 1444555666653 222 22333444443332
Q ss_pred ---cCCchh--hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009622 314 ---TGDDMQ--TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 314 ---~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
..-+.. .-.-++..+++.+-.+|.+. -.++-.+++-.+.+++...++.-..+. |+++.+.+.+.....+.-.
T Consensus 624 Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~ 700 (1010)
T KOG1991|consen 624 TILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFT 700 (1010)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHH
Confidence 211111 11123446677788888877 778888899888888775544333333 4788888888888888899
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHcCChHHHHhccCC---CChHHHHHHHHHHHHHHhh
Q 009622 389 EAAWAISNATSGGTHEQIKFL-VIQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l-~~~~~l~~L~~lL~~---~~~~v~~~al~~l~~ll~~ 443 (530)
...-+|.|++..+.+.....- .-.-++..+..++.+ .|.+. ..+++.+.-++-.
T Consensus 701 d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL~ 758 (1010)
T KOG1991|consen 701 DMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDC-ESACKLLEVIILN 758 (1010)
T ss_pred HHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHHH
Confidence 999999999987765332211 111123344444544 23333 3456666665543
No 115
>PF05536 Neurochondrin: Neurochondrin
Probab=98.04 E-value=0.00071 Score=69.48 Aligned_cols=236 Identities=19% Similarity=0.181 Sum_probs=162.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh---hhhHhhcCChHHHHHhhcCC------CchhHHHHHHHHhhhhcc
Q 009622 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~Ll~ll~~~------~~~~~~~~a~~~L~~L~~ 231 (530)
+...+.+|+..+.+-+-.++..+.+++...+.. ++.+.+.=+...+-++|... +....+.-++.+|+.+|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 566778888877777777888888888655532 23455554556666666421 346678888999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622 232 GKPQPPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 310 (530)
.+.........+-+|.|+..+.+.+. .+...++.+|..++..++ -.+.+++.|.++.|.+.+.+ .+.....|+.++.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 76555566678889999999988776 999999999999995554 45778999999999999987 5567888999998
Q ss_pred HhhcCCchhhHH---HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHH----HHhCcHHHHHHHHhcC
Q 009622 311 NIVTGDDMQTQC---VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQAV----IEANIIGPLVALLENA 382 (530)
Q Consensus 311 nl~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l----~~~~~i~~L~~ll~~~ 382 (530)
+++......... -.-..+++.+...+... ....+.++|..|+.+....+.. .... .-..+...+..++.+.
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 887654421100 01124566677777666 6677888999999988754211 1111 1123455556666665
Q ss_pred -chhHHHHHHHHHHHhhc
Q 009622 383 -EFDIKKEAAWAISNATS 399 (530)
Q Consensus 383 -~~~v~~~a~~aL~nl~~ 399 (530)
.+.-|..++.....+..
T Consensus 244 ~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 45666666665555543
No 116
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.03 E-value=0.00036 Score=74.22 Aligned_cols=296 Identities=15% Similarity=0.101 Sum_probs=186.6
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC----CC
Q 009622 161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQ 235 (530)
Q Consensus 161 i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~----~~ 235 (530)
++.+...++. .....+..|+..|..++..... ...-..++|.++.++ .++...++..|+.+|..+...- +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4556666655 5567788899999888854321 111223788999999 7888999999988888765432 33
Q ss_pred CChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622 236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~ 314 (530)
....+..-++|.|..++.+ ....++...+.+|+.++... ..+...+.-.....+++..+.+ +... .
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nse-------t~~~--~ 566 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSE-------TAPE--Q 566 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccc-------cccc--c
Confidence 4455667788999999887 45566777777777776432 1122222222222234443332 0000 0
Q ss_pred CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009622 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 394 (530)
......+.+ ..++-.....++.++ ++-||+.-...|+-||.-... .--+.=++..|+..|++.|+.+|..-...|
T Consensus 567 ~~~~~~~~L-~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 567 NYNTELQAL-HHTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSI 641 (1431)
T ss_pred ccchHHHHH-HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence 011112222 224445566677776 778888777777777651100 001223688999999999999998776666
Q ss_pred HHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH
Q 009622 395 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL 474 (530)
Q Consensus 395 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 474 (530)
.-++..-.... ++.++++.|..-|.+.++-|+..|++++..|++.+--.+. +. ...++.+.-+
T Consensus 642 ~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~--------~v-----~~i~~~v~Pl 704 (1431)
T KOG1240|consen 642 VGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP--------AV-----KDILQDVLPL 704 (1431)
T ss_pred cceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH--------HH-----HHHHHhhhhh
Confidence 65544221111 3446788888899999999999999999999988754321 11 2224556667
Q ss_pred hcCCCHHHHHHHHHHHHHhCC
Q 009622 475 QTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 475 ~~~~~~~v~~~a~~il~~~~~ 495 (530)
.-|+|.=|+..+..+|-....
T Consensus 705 L~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 705 LCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeCchHHHHHHHHHHHHHHHh
Confidence 899999999999888876544
No 117
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.99 E-value=6.8e-05 Score=68.71 Aligned_cols=187 Identities=16% Similarity=0.233 Sum_probs=118.9
Q ss_pred hCCCCchhHHHHHHHHhHhhcCC--chhhHHHhh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 009622 294 LMHPSPSVLIPALRTVGNIVTGD--DMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA 369 (530)
Q Consensus 294 L~~~~~~~~~~a~~~L~nl~~~~--~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 369 (530)
-.+.+|..+..++..|..++.+. ......+.. ..++..+...+.+. ...+.+.||.++..++..........++
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~- 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD- 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence 36678999999999999998876 222222221 15667777777776 7789999999999998743344444433
Q ss_pred CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 009622 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 449 (530)
Q Consensus 370 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~ 449 (530)
.++|.|++.+.++..-++..|..+|..++.... ....+ .+..+.....+.++.++..++..+..++........
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 578999999998888999999999999999764 11111 156677788999999999999999999876651110
Q ss_pred cCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622 450 LGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
. ... ...+ ......|..+..+.+++|++.|...+..|+.
T Consensus 168 ~----l~~-~~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 168 V----LQK-SAFL--KQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp G----G---HHHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred h----hcc-cchH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 0 000 0001 2235677888999999999999999988764
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.98 E-value=8.4e-05 Score=68.09 Aligned_cols=186 Identities=17% Similarity=0.086 Sum_probs=117.3
Q ss_pred cCCChHHHHHHHHHHHHhhcCC-CCCcHHHHHH--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009622 83 WSNDSGVQYECTTQFRKLLSIE-RSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159 (530)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~--~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g 159 (530)
.+.+++.+..|+..|+.++.+. .......+.. ..++..+...+.+.. ..+...|+.++..++..-....+..+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 5688999999999999998874 1122222221 245667777777766 78899999999998884444444333 24
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-CCCh
Q 009622 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF 238 (530)
Q Consensus 160 ~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~ 238 (530)
++|.|+..+.++...+++.|..+|..++...+..... ....+...+ .+.++.++..++..+..+....+ ....
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 6899999999988999999999999998766511111 133344444 88899999999998888877654 1121
Q ss_pred h----hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622 239 D----QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 239 ~----~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
. ....+.+.+..++.+.+++++..+-.++..+....++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1 2356888999999999999999998888877544333
No 119
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.0014 Score=58.36 Aligned_cols=244 Identities=19% Similarity=0.268 Sum_probs=137.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009622 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (530)
Q Consensus 85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 164 (530)
....-++.|+..|++++... .+..+.+...+++ ..++.+.+.+|+.... ..+++.|
T Consensus 17 ~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l 72 (289)
T KOG0567|consen 17 QPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVL 72 (289)
T ss_pred HHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHH
Confidence 34456777888887776432 1334444444433 4555666666665443 2345666
Q ss_pred HHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC---------
Q 009622 165 VKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--------- 233 (530)
Q Consensus 165 ~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~--------- 233 (530)
+..|.. ..+-+|..|..+|+.+. + +. .++.+-+.. +++-..+...+-.++..+-...
T Consensus 73 ~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~ 140 (289)
T KOG0567|consen 73 VEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSS 140 (289)
T ss_pred HHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccC
Confidence 666544 34556666677776664 1 11 222333333 4444444444444443332211
Q ss_pred ------CCCChhhhhchHHHHHHh-hcCCChhH-HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009622 234 ------PQPPFDQVSPALPALAHL-IHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (530)
Q Consensus 234 ------~~~~~~~~~~~l~~L~~l-l~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a 305 (530)
|.+. ....-+.-+-.. +..+.+.. +..+...|.|+. .++. +..|.+-+..++.-.+..+
T Consensus 141 p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Eea---------I~al~~~l~~~SalfrhEv 207 (289)
T KOG0567|consen 141 PYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEA---------INALIDGLADDSALFRHEV 207 (289)
T ss_pred ccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHH---------HHHHHHhcccchHHHHHHH
Confidence 1111 111223333333 33333332 344566666542 2333 3345555666777889999
Q ss_pred HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 306 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
..++|.+-+. -.++.|.+.|... .++.||.+|+.+|+.++.. + .++.|.+.+.++++
T Consensus 208 AfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~vL~e~~~D~~~ 265 (289)
T KOG0567|consen 208 AFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEVLKEYLGDEER 265 (289)
T ss_pred HHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHHHHHHcCCcHH
Confidence 9999988642 2467777777543 2789999999999999643 2 56778888888888
Q ss_pred hHHHHHHHHHHHhhc
Q 009622 385 DIKKEAAWAISNATS 399 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~ 399 (530)
-|++.+..+|.-+-.
T Consensus 266 vv~esc~valdm~ey 280 (289)
T KOG0567|consen 266 VVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888776544
No 120
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00037 Score=66.98 Aligned_cols=176 Identities=17% Similarity=0.135 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc----CCch---hhHHHhhcCchH
Q 009622 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT----GDDM---QTQCVIEYQALP 330 (530)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~----~~~~---~~~~~~~~~~l~ 330 (530)
-+...|+++++-+.-++........-......+...+.+..-..+..+.|++|||.. +.+. ....+.. -.+.
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~ 484 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLL 484 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHH
Confidence 356667777666655544443333344556667777777777889999999999974 2222 2222221 1222
Q ss_pred HHHHhhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-------hCcHHHHHH-HHhcCchhHHHHHHHHHHHhhcC
Q 009622 331 CLLNLLS--GNYKKSIKKEACWTVSNITAGNREQIQAVIE-------ANIIGPLVA-LLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 331 ~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-------~~~i~~L~~-ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
.++..-. +.....|+.+|..+|+|+..- .+.+.+ .+-+..++. ..-....+||-+||++++|+..+
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 2222221 122568999999999998541 221221 111222222 22234679999999999999986
Q ss_pred CCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHH
Q 009622 401 GTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLE 438 (530)
Q Consensus 401 ~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~ 438 (530)
..-.....=+-..+.+.|+.++. ..+-+++..|..+|.
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 43211000011124556666654 345556666655543
No 121
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=0.024 Score=59.90 Aligned_cols=387 Identities=15% Similarity=0.112 Sum_probs=226.0
Q ss_pred CHHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 74 NLPVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.+-.++..+...+. +.+..++..+......... ..++....+..-++.++.. +.++..++.-+++++..-..
T Consensus 198 ~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~----~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~-- 270 (759)
T KOG0211|consen 198 HLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD----DAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES-- 270 (759)
T ss_pred HHHHHHHHccchhhhhcchhhhhhhHHhccCCCh----HHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH--
Confidence 33445555555443 2355566666665543211 2333445666666766666 99999999999999984333
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
.....+.++.+.++..+....+++.|...+.++...-..-- . ....+.+.+++.. .+.+..+........+.++..
T Consensus 271 -~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d-~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~ 346 (759)
T KOG0211|consen 271 -EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-D-VVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSA 346 (759)
T ss_pred -HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-h-hhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHH
Confidence 56677899999999998888899999998888874221100 1 1222456666666 444444444433333333322
Q ss_pred CCC-CCh----------------------------------------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622 233 KPQ-PPF----------------------------------------DQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 233 ~~~-~~~----------------------------------------~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
-.. ... .....++|.+-.+..+.+..++...+..+..+.
T Consensus 347 ~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~ 426 (759)
T KOG0211|consen 347 VGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLS 426 (759)
T ss_pred hccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccC
Confidence 100 000 000112233333333333333333333322222
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009622 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (530)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (530)
.-.+ ....+ ....+.+...++...+.++....+.+..+-...+...........+|.+..+-... ..+++.+..+.
T Consensus 427 p~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ 502 (759)
T KOG0211|consen 427 PILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEY 502 (759)
T ss_pred ccCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHH
Confidence 1110 00000 13445566666667777787777777666544444444445556777777777766 78888888888
Q ss_pred HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009622 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431 (530)
Q Consensus 352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~ 431 (530)
+-.++.... ..+++...-+.+...+.+....+++.|+..+.-++..-..+. .....++.+..+..+++...+.
T Consensus 503 ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~R~ 575 (759)
T KOG0211|consen 503 IPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLVRM 575 (759)
T ss_pred HHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccchhh
Confidence 888775321 233333344555555666678899999999988876332221 1223566666666666778888
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009622 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 432 ~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
..+.++..+.....+. -+.+ ..+..+..+..++.++|+-.+.+.+.++-..
T Consensus 576 t~l~si~~la~v~g~e---------i~~~-----~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 576 TTLFSIHELAEVLGQE---------ITCE-----DLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HHHHHHHHHHHHhccH---------HHHH-----HHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 8888888777655321 1233 3367888889999999999998888877554
No 122
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.015 Score=60.81 Aligned_cols=141 Identities=17% Similarity=0.139 Sum_probs=108.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
-++.+++.+.+.|.+++...-..+...+... |. .++- .++.+.+=+.+++ +.+|..|++.++.+-. ++...
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~--~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~ 126 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLK--PE--LALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG 126 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HH--HHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence 5678888888888888888888888777653 32 1111 3777888888888 9999999999987654 33332
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
.+++.+.+++.++++.+|..|+.++.++-.-++ +.+.+.|.+..+..++ .+.++.+..+|+.++..+...
T Consensus 127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 347889999999999999999999999975443 3455666676666666 889999999999999998766
No 123
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.88 E-value=0.0001 Score=56.38 Aligned_cols=95 Identities=18% Similarity=0.331 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009622 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423 (530)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 423 (530)
.|+.+.++|+.++.+-+..+...++ .++++++..+.+.+++||..|+.+|.|++.....+...++ ..+++.|..++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHc
Confidence 3677888888888765555555554 5899999999999999999999999999986544444433 357889999999
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 009622 424 CPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 424 ~~~~~v~~~al~~l~~ll~ 442 (530)
+.|+.|+.. .+.|.++++
T Consensus 79 D~d~~Vr~~-a~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSA-AELLDRLLK 96 (97)
T ss_pred CCchhHHHH-HHHHHHHhc
Confidence 999998864 577877775
No 124
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.88 E-value=5.6e-05 Score=57.47 Aligned_cols=86 Identities=27% Similarity=0.481 Sum_probs=69.5
Q ss_pred HHHHHHhh-CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009622 287 FPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 287 i~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
++.|++.| +++++.++..++++|+.+.. ..+++.|..++.++ ++.+|..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDE-DPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC---------
Confidence 46788888 88899999999999995431 14588999999888 9999999999999883
Q ss_pred HHHhCcHHHHHHHHhcC-chhHHHHHHHHHH
Q 009622 366 VIEANIIGPLVALLENA-EFDIKKEAAWAIS 395 (530)
Q Consensus 366 l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 395 (530)
....++.|.+++.++ +..+|..|..+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 124788999988776 5667999999875
No 125
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.88 E-value=4.6e-05 Score=57.92 Aligned_cols=87 Identities=29% Similarity=0.421 Sum_probs=69.0
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622 118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 118 v~~Lv~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
+|.|++.| ++++ +.++..|+++|+.+.. + .+++.|+.+++++++.++..++++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 5555 9999999999995432 2 34789999999999999999999999882
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009622 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~ 227 (530)
....++.|.+++.++.+..++..++++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12378899999966667777888888874
No 126
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0062 Score=60.15 Aligned_cols=308 Identities=13% Similarity=0.140 Sum_probs=175.4
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCch
Q 009622 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL 216 (530)
Q Consensus 137 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~ 216 (530)
.+++...+...+++.+..+ .|.|-..+++.-.-+.-.++++++.++...- ....++ ..+..|-.+| +++..
T Consensus 247 lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL-~s~rv 317 (898)
T COG5240 247 LVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFL-KSTRV 317 (898)
T ss_pred hHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHH-hcchH
Confidence 3445555555555555444 3667777777667777788888888775431 111111 1345555556 78888
Q ss_pred hHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009622 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (530)
Q Consensus 217 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 296 (530)
..+-.|+.+|..|+...|... ..+-+-+-.++.+.+..+...|+.+|.. .+.++.+..++. .++.++.=+++
T Consensus 318 ~~rFsA~Riln~lam~~P~kv----~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~SD 389 (898)
T COG5240 318 VLRFSAMRILNQLAMKYPQKV----SVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMSD 389 (898)
T ss_pred HHHHHHHHHHHHHHhhCCcee----eecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhcc
Confidence 999999999999998765432 2233445566666777777776666544 334444543332 23334443444
Q ss_pred CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHH
Q 009622 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLV 376 (530)
Q Consensus 297 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 376 (530)
+-.-+...|++.|+... +.... ..+..|...|......+.++.+..+++.+....|+.... .+..|+
T Consensus 390 ~FKiI~ida~rsLsl~F---p~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC 456 (898)
T COG5240 390 GFKIIAIDALRSLSLLF---PSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLC 456 (898)
T ss_pred CceEEeHHHHHHHHhhC---cHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHH
Confidence 43445555666665543 22221 234556665654446778888888888887766554332 455677
Q ss_pred HHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCch
Q 009622 377 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVN 456 (530)
Q Consensus 377 ~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~ 456 (530)
..+.+- +.-+-++..|+-+-..+....-. ...+..+.+-+--++.-++..|+.+|.++.-..+..
T Consensus 457 ~fIEDc--ey~~I~vrIL~iLG~EgP~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--------- 521 (898)
T COG5240 457 TFIEDC--EYHQITVRILGILGREGPRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--------- 521 (898)
T ss_pred HHHhhc--chhHHHHHHHHHhcccCCCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---------
Confidence 777644 33344555555554433100000 012333333333456667778888887664322211
Q ss_pred hhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622 457 VFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 457 ~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
+........+..+.+..+++|+++|.-.++.+-
T Consensus 522 -----~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 -----VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred -----ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 111223456777888999999999988887653
No 127
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0035 Score=61.86 Aligned_cols=289 Identities=13% Similarity=0.095 Sum_probs=160.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
..|.|-.++++.- ..+..+++++++.++..+ ....+++ ..+..|-.+|+++....+-.|+++|..|+...|.....
T Consensus 265 ~rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v 340 (898)
T COG5240 265 LRPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV 340 (898)
T ss_pred HHHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence 4566667777665 789999999999988754 1112221 34677888899999999999999999999877742111
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
+-+.+-.++ .+.+..+... ++..|............-..+|.+++=+..+=.-+..++++.|+..-....
T Consensus 341 -----cN~evEsLI-sd~Nr~Isty---AITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~- 410 (898)
T COG5240 341 -----CNKEVESLI-SDENRTISTY---AITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK- 410 (898)
T ss_pred -----cChhHHHHh-hcccccchHH---HHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH-
Confidence 222333344 4444444443 344444333222222222333333333333334456666666666532211
Q ss_pred HHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622 277 KIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 277 ~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
. ..+..|... ++.+..+....++.++..+....++..+ .++..|...+.+. +.-+-+..+|+-+
T Consensus 411 --~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDc---ey~~I~vrIL~iL 475 (898)
T COG5240 411 --L-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDC---EYHQITVRILGIL 475 (898)
T ss_pred --H-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhc---chhHHHHHHHHHh
Confidence 1 112223332 2345566777777777777766654443 2355666666544 2333445555555
Q ss_pred hcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHH
Q 009622 356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435 (530)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~ 435 (530)
....|.... -...+..+..-+--.+.-||..|+.||..++...+... ....+...|-+++++.|.+++..|.-
T Consensus 476 G~EgP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~DdeVRdrAsf 548 (898)
T COG5240 476 GREGPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQDDEVRDRASF 548 (898)
T ss_pred cccCCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 442111000 00122233332323455788888888888877553222 22345567778888888888888877
Q ss_pred HHHHHH
Q 009622 436 GLENIL 441 (530)
Q Consensus 436 ~l~~ll 441 (530)
++.++=
T Consensus 549 ~l~~~~ 554 (898)
T COG5240 549 LLRNMR 554 (898)
T ss_pred HHHhhh
Confidence 777653
No 128
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.027 Score=59.99 Aligned_cols=261 Identities=13% Similarity=0.088 Sum_probs=157.9
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhh
Q 009622 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~ 194 (530)
+++..|...+++.+ ..++-.|+..++.++...+... .+ .++...+.++.- .+...-..++.+|+.++..+--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~L---ad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPEL---AD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHHH---HH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 56777888888888 7999999999999999666322 21 345566665544 334455688889999986543221
Q ss_pred hhHhhcCChHHHHHhhcC-------CCchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHHH-HHhhcCCChhHHHHHHH
Q 009622 195 DLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPAL-AHLIHSNDDEVLTDACW 265 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~-------~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L-~~ll~~~d~~v~~~a~~ 265 (530)
..+. .+++.+++-+.. +....++.+||+++|.+++...... ......+.+.| ...+-+.+-.++..|..
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 2221 256666665532 2356789999999999998763222 22333344432 23344556667777777
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh-hcCCCchhH
Q 009622 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNYKKSI 344 (530)
Q Consensus 266 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v 344 (530)
++-........ .. .+++ |+...+.-....+.++...++.-....+.....+++ .++.. +.+= +..+
T Consensus 494 AlqE~VGR~~n-~p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGN-FP-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCC-CC-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence 77554422110 00 1111 222222222334555555555555555544444433 22222 4444 8899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
|..++|+|.+++...++ .....+++++++.....+...+.-+..+.+.++..
T Consensus 561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 99999999998765554 33457889999988888888888777777776654
No 129
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0069 Score=57.98 Aligned_cols=224 Identities=14% Similarity=0.122 Sum_probs=162.6
Q ss_pred hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCC----CCC----cHHHHHHcCCHHHHHHhhcCCC-----CHHHHHHH
Q 009622 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE----RSP----PIEEVIRSGVVPRFVEFLLRED-----YPQLQFEA 137 (530)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~----~~~----~~~~~~~~g~v~~Lv~ll~~~~-----~~~i~~~a 137 (530)
+++.++.++++|.+++.++....+..+..+.... ... -++.+++.++++.|++-+..-+ ...-.+.+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 4578999999999999999999999998876432 111 2567788999999998876533 11234556
Q ss_pred HHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc----
Q 009622 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---- 211 (530)
Q Consensus 138 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---- 211 (530)
+..+-|++.-.+..+..+++.|.+.-|+.-+.. +...-...|..+|+-+..++...+...-...++..+++-+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 778888888888999999998888887775533 44556777888888888777777777777788888888774
Q ss_pred C----CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh--HHHHHHHHhC
Q 009622 212 G----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG 285 (530)
Q Consensus 212 ~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~ 285 (530)
. ....++.++..-+|+.+.....+.........+....-+++. ....+..++.+|-++..+++ .....+++..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 1 225678888888888888776666555556666665555544 45566778888888876665 5556677777
Q ss_pred cHHHHHHhhC
Q 009622 286 VFPRLAEFLM 295 (530)
Q Consensus 286 ~i~~L~~lL~ 295 (530)
++..++.+.-
T Consensus 362 GLrtiF~~FM 371 (536)
T KOG2734|consen 362 GLRTIFPLFM 371 (536)
T ss_pred hHHHHHHHHh
Confidence 7776666543
No 130
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.0035 Score=59.92 Aligned_cols=224 Identities=16% Similarity=0.085 Sum_probs=157.8
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---------hHHHHHHHHhCcHHHHHHhhCCCCch------hHH
Q 009622 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---------NDKIQAVIEAGVFPRLAEFLMHPSPS------VLI 303 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---------~~~~~~~~~~~~i~~L~~lL~~~~~~------~~~ 303 (530)
.....+++.|+.+|.+.+.+|....+..+..+++.+ ...+..+++.++++.|++.+..-+.+ -..
T Consensus 121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH 200 (536)
T ss_pred HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence 344678899999999999999999999998888432 24577888889999999988654433 345
Q ss_pred HHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh--
Q 009622 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-- 380 (530)
Q Consensus 304 ~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-- 380 (530)
..+..+-|++...+.....+.+.|.+.+|++-+... .-...+..|.-+++-+...+.+....+-...++..+++-+.
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y 280 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY 280 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence 667888899988888888888889999999865433 13456777888888877766666666666777888877552
Q ss_pred -cC------chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCC
Q 009622 381 -NA------EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT 453 (530)
Q Consensus 381 -~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~ 453 (530)
.. +.+.-.+...+||.+... +.....++....+....-++.. ....+..++.+|..++...+
T Consensus 281 k~~dP~~~~E~EmmeNLFdcLCs~lm~--~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~-------- 349 (536)
T KOG2734|consen 281 KRHDPATVDEEEMMENLFDCLCSLLMA--PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPE-------- 349 (536)
T ss_pred hccCCCCcCHHHHHHHHHHHHHHHhcC--hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCC--------
Confidence 11 345667777888888773 4666777766666555444444 44456667777776664433
Q ss_pred CchhhHHHhhhhccHHHHHHH
Q 009622 454 DVNVFTQMIDDAEGLEKIESL 474 (530)
Q Consensus 454 ~~~~~~~~~~~~~~~~~l~~l 474 (530)
..+++..|.+.+|+..+-.+
T Consensus 350 -gt~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 350 -GTPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred -chHHHHHHHHHHhHHHHHHH
Confidence 22357777777777777655
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.73 E-value=4e-05 Score=52.25 Aligned_cols=55 Identities=27% Similarity=0.444 Sum_probs=46.7
Q ss_pred chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 299 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
|.+|..|+++||+++...+..... ....+++.|..+|.++ ++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 468999999999998877766544 4457899999999988 889999999999976
No 132
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.0047 Score=55.17 Aligned_cols=257 Identities=18% Similarity=0.217 Sum_probs=160.4
Q ss_pred HHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622 118 VPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 118 v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
+..+.+.|.... ...-+..|+..|.++... +.+..+.+...+.+..++...+++|+.....
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~------- 66 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE------- 66 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence 444555555432 134456677666666652 1255555666555566677778888776422
Q ss_pred HhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009622 197 VLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
..++.++..+. .+..+-++..|..+|..+.. ...++.+-+..+.+-..|.+.+..++..+-..+.
T Consensus 67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 36788888885 34467788899999988873 3456777777766667777777777766642211
Q ss_pred HHH----HHH--H------HhCcHHHHHHhhCCC-Cch-hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc
Q 009622 276 DKI----QAV--I------EAGVFPRLAEFLMHP-SPS-VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341 (530)
Q Consensus 276 ~~~----~~~--~------~~~~i~~L~~lL~~~-~~~-~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 341 (530)
... ... + ..+-+..+-..|.+. .+. -+..|...|.|+.. + ..+..|..-+..+ +
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-S 200 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-S 200 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-h
Confidence 000 000 0 001122233333222 221 24456666666542 1 2345666677777 8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 009622 342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~ 419 (530)
.-.|.+++++++.+-+. -.+|.|.+.|.+. ++-||.+|+.||+.++.. .+++.|.
T Consensus 201 alfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------~~~~vL~ 257 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------DCVEVLK 257 (289)
T ss_pred HHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------HHHHHHH
Confidence 89999999999998543 1567777777554 689999999999999773 2577888
Q ss_pred hccCCCChHHHHHHHHHHHHHH
Q 009622 420 DLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 420 ~lL~~~~~~v~~~al~~l~~ll 441 (530)
.++.++++-+...|.-+|..+.
T Consensus 258 e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHHH
Confidence 8898888888887777766443
No 133
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.69 E-value=0.0072 Score=62.93 Aligned_cols=237 Identities=16% Similarity=0.093 Sum_probs=154.0
Q ss_pred hhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCC
Q 009622 124 FLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (530)
Q Consensus 124 ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~ 202 (530)
.+.....|.+-..|.|++...+.........+ . -++...+..+. +..+-++-.|+.+++..|+... +. . ...++
T Consensus 457 ~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~-~-~~p~i 531 (1005)
T KOG2274|consen 457 GLVYQESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LL-S-LQPMI 531 (1005)
T ss_pred hcccccCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-cc-c-cchHH
Confidence 33333447777788898887776422222111 1 12333344443 3445677778888777763222 11 1 12345
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHHH
Q 009622 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQA 280 (530)
Q Consensus 203 i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~ 280 (530)
+..|+.+. .....++....+.+|+..|..+|.........+.|.+..++. ++|+.+...+--++-.++.... +..
T Consensus 532 ld~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g- 608 (1005)
T KOG2274|consen 532 LDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG- 608 (1005)
T ss_pred HHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc-
Confidence 66677776 566788899999999999999888888888888887666553 5678777776666666654221 111
Q ss_pred HHHhCcHHHHHHhhCCCC----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622 281 VIEAGVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 281 ~~~~~~i~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
-.....+|.+++.|..+. ......++..|..+..+.+......+-.-++|.+.++.-++.+..+...+.-+|..+.
T Consensus 609 ~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 609 PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 122367899999998876 4566677788887877766544444555677888877766657888888999999988
Q ss_pred cCCHHHHHHHHH
Q 009622 357 AGNREQIQAVIE 368 (530)
Q Consensus 357 ~~~~~~~~~l~~ 368 (530)
..+.++....-.
T Consensus 689 s~~~eq~~t~~~ 700 (1005)
T KOG2274|consen 689 SVTLEQLLTWHD 700 (1005)
T ss_pred hcCHHHHHhhcc
Confidence 876666655443
No 134
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.14 Score=53.97 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=125.2
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009622 82 VWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV 161 (530)
Q Consensus 82 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i 161 (530)
+.+.+...+..|++.+......+ .+ . +.+.|-+++.+.+.+ .+++.-.-.-|.+++...++..-. ++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 56677777888886655444332 22 2 224677788777666 999999999999999977744332 36
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh
Q 009622 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (530)
Q Consensus 162 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 241 (530)
+.+.+=++++++.+|..|+++++.+= . + .+ -..+++++.+++ +++++.+++.|+.|+..+-+-++. ....
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~-~-~----el-~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~--l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR-V-K----EL-LGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD--LYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC-h-H----HH-HHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh--hhhc
Confidence 78888899999999999999999871 1 1 11 222678888888 889999999999999999876432 2223
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009622 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
.|.+..+..++...|+.+..+|+.++..+-..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 45667777788899999999999999887543
No 135
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.014 Score=62.06 Aligned_cols=257 Identities=14% Similarity=0.130 Sum_probs=156.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh
Q 009622 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (530)
Q Consensus 159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 238 (530)
+++..|+..+++.+..++=.|+..++.++...|. . +...++...+.++....+...-..+|-+|..|+... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---E-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---H-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 5677888888889999999999999999987762 1 222366677776644445667779999999999874 2223
Q ss_pred hhhhchHHHHHHhhcC--------CChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622 239 DQVSPALPALAHLIHS--------NDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~--------~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L 309 (530)
.....++|.+.+.+.- ....|+..||..++.++.... .....+++.=.-..|...+-+.+-.+|..|..++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 3456778887776652 245677777777766664432 2223233222222334445667778898888887
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-HhcCchhH
Q 009622 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNY--KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LENAEFDI 386 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v 386 (530)
-....... -.|.=++++.+.. .-..|.++...++--.+..+..+..+++ .|+.- +.+-|..+
T Consensus 496 qE~VGR~~----------n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~i 560 (1133)
T KOG1943|consen 496 QENVGRQG----------NFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKI 560 (1133)
T ss_pred HHHhccCC----------CCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHH
Confidence 65543211 1111112222220 2233444444555544455544444443 22222 45568999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHH
Q 009622 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~l 440 (530)
|..++++|.+++.. .+++ ...+.+++|++...+.+...+..+.-+...+
T Consensus 561 relaa~aL~~Ls~~-~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 561 RELAAYALHKLSLT-EPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred HHHHHHHHHHHHHh-hHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 99999999998774 2332 4457788888888888877665554444444
No 136
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.56 E-value=0.069 Score=53.61 Aligned_cols=299 Identities=15% Similarity=0.126 Sum_probs=172.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCCC----cHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHhcCChhh-HHH
Q 009622 86 DSGVQYECTTQFRKLLSIERSP----PIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIASGTSEH-TKV 154 (530)
Q Consensus 86 ~~~~~~~a~~~l~~l~s~~~~~----~~~~~~~~g~v~~Lv~ll~~~~------~~~i~~~a~~~L~~l~~~~~~~-~~~ 154 (530)
+.+.....+..+.+++...... ......+..++|.+.++..... ++.+-..+..++..+...-+.. .+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5566677777777776653222 2344445568888887764321 1355555666666665533322 222
Q ss_pred HHhCCChHHHHHhhC----------CCC--HHHHHHHHHHHHh-hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHH
Q 009622 155 VIDHGAVPIFVKLLY----------SPS--DDVREQAVWALGN-IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221 (530)
Q Consensus 155 ~~~~g~i~~L~~lL~----------~~~--~~~~~~a~~~L~n-l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~ 221 (530)
+ +..+..+.- ..+ .......+..+.. +++-.+.+.-. .....+..++.+.....++..+..
T Consensus 136 ~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~ 209 (415)
T PF12460_consen 136 I-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLA 209 (415)
T ss_pred H-----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHH
Confidence 2 222333222 011 1112222222222 22222222111 111256677777766667888888
Q ss_pred HHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCC----ChhHHHHHHHHHHHhc-cCChHHHHHHHHhCcHHHHHHhhC
Q 009622 222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSN----DDEVLTDACWALSYLS-DGTNDKIQAVIEAGVFPRLAEFLM 295 (530)
Q Consensus 222 a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~----d~~v~~~a~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~lL~ 295 (530)
++.+++.+...-+... ....++..+...+ ... .....+-..|...-+. ++++.. . .++..|+.++.
T Consensus 210 ~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~-----~~~~~L~~lL~ 281 (415)
T PF12460_consen 210 ALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-T-----ELLDKLLELLS 281 (415)
T ss_pred HHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-H-----HHHHHHHHHhC
Confidence 8888888877632222 3344555444444 222 2334444556655444 333322 2 35677888887
Q ss_pred CCCchhHHHHHHHHhHhhcCCch--------hhHHHhhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009622 296 HPSPSVLIPALRTVGNIVTGDDM--------QTQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 296 ~~~~~~~~~a~~~L~nl~~~~~~--------~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
+ +.+...+.+.++-+....+. ..+.+.+. .++|.|+...... +...+.....+|+.+..+-|..+
T Consensus 282 ~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~v 358 (415)
T PF12460_consen 282 S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSV 358 (415)
T ss_pred C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHH
Confidence 7 55788888888888765232 22223333 3566676766666 55688888899999998777654
Q ss_pred HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009622 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
-.---..++|.|++.|+.++.+++..++.+|..+....
T Consensus 359 l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 359 LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 33323468999999999999999999999999999865
No 137
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.52 E-value=0.018 Score=60.05 Aligned_cols=312 Identities=12% Similarity=0.060 Sum_probs=182.6
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009622 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 163 (530)
+..|.....|.+.+.+..+.. .....+. .-++...+..+..+..+-++..|+++++..+. ...... ...+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence 566777778888888776552 1111111 11344555666555546788888888888774 221111 12466778
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009622 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242 (530)
Q Consensus 164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 242 (530)
|+++....+.++.-..+.+|+..+..+|++... .+..+.|.++.+.. .+.|+.+...+--++-.++... .....+..
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 888888788889889999999999888865444 34445565555543 5567777777767777666632 11223446
Q ss_pred chHHHHHHhhcCCC----hhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCC
Q 009622 243 PALPALAHLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 243 ~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~ 316 (530)
..+|.++..+..++ .....-++..|..+.++.+ ...+.++. -++|.+.++. .+++......+-.||..+....
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 78999999998765 4555556666665655433 22233333 4556666664 4567788888889998888765
Q ss_pred chhhHHHhhc-C-----chHHHHHhhcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHhCcHHH-HHHHHhcCchh
Q 009622 317 DMQTQCVIEY-Q-----ALPCLLNLLSGNYKKSIKKEACWTVSNITA----GNREQIQAVIEANIIGP-LVALLENAEFD 385 (530)
Q Consensus 317 ~~~~~~~~~~-~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~-L~~ll~~~~~~ 385 (530)
.++...--.. | ++..+..+|+ ++.-..++..+|.+.. +-+......++. ++.. +.++.+.....
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLd----p~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls 766 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLD----PETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS 766 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcC----CccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence 5443222222 2 2333344443 3333444444444433 222222222221 2333 33344445678
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHH
Q 009622 386 IKKEAAWAISNATSGGTHEQIKFL 409 (530)
Q Consensus 386 v~~~a~~aL~nl~~~~~~~~~~~l 409 (530)
+-+..+.++++++..........|
T Consensus 767 viQsLi~VfahL~~t~~~~~l~FL 790 (1005)
T KOG2274|consen 767 VIQSLIMVFAHLVHTDLDQLLNFL 790 (1005)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHH
Confidence 888889999999886433333333
No 138
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0095 Score=61.13 Aligned_cols=261 Identities=15% Similarity=0.168 Sum_probs=144.1
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh-
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD- 195 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~- 195 (530)
..+.+-.++.+.. ..+..+|++++.++...++.... ..+..|--+++++...+|-.|.++|..+|.-.|..-.
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 3444555666666 78999999999998875544332 2677788888889999999999999999976553211
Q ss_pred -------hHhhcC---ChHHHHHhhcCCC---chhHHHHHHHHhhhhccCCCCCChh-----------hhhchHHHHHHh
Q 009622 196 -------LVLSQG---GLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPFD-----------QVSPALPALAHL 251 (530)
Q Consensus 196 -------~i~~~~---~i~~Ll~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~-----------~~~~~l~~L~~l 251 (530)
.+-+.+ ....+..+|+... -..+......+.++++.+....... .....++.|..+
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 110000 1112222232111 1223333444444444432111100 112333444444
Q ss_pred hcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009622 252 IHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (530)
Q Consensus 252 l~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~ 330 (530)
|..+ .-+....+..++..+....++... .++..|..++.+.. ...-+.++|.-+....+.. ......+.
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Pskyir 469 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPSKYIR 469 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcchhhH
Confidence 4432 233444455555544443222211 23445555554433 3334444444444332211 11223455
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 331 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.+.....-. +..+|..|..+|.++..+++... ..+.-.|.+++.+.|.++|..|..+|.++..
T Consensus 470 ~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 470 FIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 555555555 78899999999999986543321 2355677788888999999999999999874
No 139
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.0015 Score=62.95 Aligned_cols=321 Identities=16% Similarity=0.132 Sum_probs=164.4
Q ss_pred CHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC----
Q 009622 74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG---- 147 (530)
Q Consensus 74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~---- 147 (530)
........+.+ ....++.++++.|.-++... ....+....+...+...+.... |.++..++.++..+..+
T Consensus 254 ~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~ 329 (728)
T KOG4535|consen 254 SGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQ 329 (728)
T ss_pred chhhHHhhhcCccCCchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhh
Confidence 44455555554 23457778887777665431 1111111222333444455566 89999999888776542
Q ss_pred -ChhhHHHHHhCCChHHHH------H-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHH
Q 009622 148 -TSEHTKVVIDHGAVPIFV------K-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219 (530)
Q Consensus 148 -~~~~~~~~~~~g~i~~L~------~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~ 219 (530)
.++..+.-...|-+-.+. . .-.+..+..+...+.++.+|.......-.. -.....+.++.-..++.+.-+.
T Consensus 330 ~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn-~~~T~~~~Fl~GC~d~~~~lv~ 408 (728)
T KOG4535|consen 330 YKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPN-DRQTLCITFLLGCNDSKNRLVK 408 (728)
T ss_pred cCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCC-cchhhhHHHHhcccchHHHHHH
Confidence 222222211112111110 0 112233445566666676665322110000 0000122222222234455566
Q ss_pred HHHHHHhhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----Ch---HHHHHHHHhCcHHHHH
Q 009622 220 RNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----TN---DKIQAVIEAGVFPRLA 291 (530)
Q Consensus 220 ~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~---~~~~~~~~~~~i~~L~ 291 (530)
..|..++..+.-+... ........+...+...+.+..-..++.+.|+++++++. .+ .....+.. -.+..+.
T Consensus 409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~ 487 (728)
T KOG4535|consen 409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKML 487 (728)
T ss_pred HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHH
Confidence 6677777776666522 23344556666666666666667889999999999743 11 11111111 1122222
Q ss_pred Hhh---CCCCchhHHHHHHHHhHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009622 292 EFL---MHPSPSVLIPALRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 292 ~lL---~~~~~~~~~~a~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
..- ...+.+++..+.++|+|+...-+.. ....+..+.+..+....-.+....||.+||.+++|+..+..-..+.
T Consensus 488 ~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~ 567 (728)
T KOG4535|consen 488 RSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQT 567 (728)
T ss_pred HHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccC
Confidence 221 1246789999999999997422100 0011111222222222222226789999999999998753110111
Q ss_pred H-HHhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcC
Q 009622 366 V-IEANIIGPLVALLEN-AEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 366 l-~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~ 400 (530)
. ....+++.|+.++.+ .+++||..|+.+|.--...
T Consensus 568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 1 112357788887755 4899999999998876553
No 140
>PRK14707 hypothetical protein; Provisional
Probab=97.46 E-value=0.22 Score=57.15 Aligned_cols=353 Identities=18% Similarity=0.109 Sum_probs=202.1
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhh
Q 009622 118 VPRFVEFLL-REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 118 v~~Lv~ll~-~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
+-.+++-++ .+++...+..+......++. ....+..+ +...|..++..++. ++..-.++++..|.....+....+.
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 334444433 34446677766666666666 34444444 44557777777766 4433444455555444333344555
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhh-hhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~-~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.+-.. .+...++.|.+-++......+..++. .+..+........-..+-..|..+-+-.|..+...+...|..=...+
T Consensus 243 ~~~~q-~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d 321 (2710)
T PRK14707 243 ELKPQ-ELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADD 321 (2710)
T ss_pred hCChH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhcc
Confidence 54333 45566666656666655555555444 45544322222222333444555555677777777666664433334
Q ss_pred hHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622 275 NDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 275 ~~~~~~~~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
.+..+.+ +.-.+...+..| +.++..+...|...|..-....+...+.+-..|+-..|-.+-+-+ +..+...|+..|.
T Consensus 322 ~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA 399 (2710)
T PRK14707 322 PELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWP-DTPVCAAAASALA 399 (2710)
T ss_pred Hhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCC-CchHHHHHHHHHH
Confidence 4333322 222333344444 345555555555555444444555544333334444444444555 6666677776666
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009622 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 433 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~a 433 (530)
.=..++++....+-..|+-..|-.+-+-++..+...++.+|.--..+ +.+.++.|--.++...|..+-+.+|..+...+
T Consensus 400 ~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a 478 (2710)
T PRK14707 400 EHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQT 478 (2710)
T ss_pred HHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence 65567777776666677777777777888888999998888877765 56777777666777777777789998877766
Q ss_pred HHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009622 434 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487 (530)
Q Consensus 434 l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~ 487 (530)
.+.|.-=+..... .+.-|.-.+....|..|...++......|.
T Consensus 479 a~~La~~l~~~~~-----------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~ 521 (2710)
T PRK14707 479 ASALAARLAHERR-----------LRKALKPQEVVIALHSLSKWPDTPICAEAA 521 (2710)
T ss_pred HHHHHHHhcccHH-----------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 6666555544332 345555566677777777777766554443
No 141
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.45 E-value=0.0008 Score=51.49 Aligned_cols=68 Identities=16% Similarity=0.341 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHhhhCCCchhhhhHhhc
Q 009622 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (530)
Q Consensus 133 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (530)
++...+++|+|++..++...+.+.+.|++|.++.... ..+|-+++.|+|++.|++.++++.+..+...
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567889999999999999999999999999999764 4789999999999999999999888776543
No 142
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.056 Score=58.32 Aligned_cols=143 Identities=14% Similarity=0.192 Sum_probs=109.9
Q ss_pred cHHHHHHhhCC----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009622 286 VFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 286 ~i~~L~~lL~~----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (530)
+.|.+++..+. +++.++..|.-+|+.++.-+.+.. ..-+|.|+.++...+++.+|.++..+++.++...|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34555555533 468899999999999987655444 245789999998555999999999999999876655
Q ss_pred HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll 441 (530)
.+.. .-+.|.+.+.+.++.||+.|..+|.+|...+ .+--.|.+..+..+|.++++.+...|=..+..|.
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 4433 4568889999999999999999999999853 2335699999999999999999887776555555
Q ss_pred hhh
Q 009622 442 KVG 444 (530)
Q Consensus 442 ~~~ 444 (530)
..+
T Consensus 1064 ~k~ 1066 (1251)
T KOG0414|consen 1064 SKG 1066 (1251)
T ss_pred hcc
Confidence 443
No 143
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.42 E-value=0.03 Score=56.40 Aligned_cols=230 Identities=16% Similarity=0.116 Sum_probs=143.1
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009622 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (530)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 158 (530)
.+.++.+..+|+++|.|++-.. ....+.+.+.|..+.+++.|+... +.++.+-..++|.-++...++.+..+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3567889999999999999874 334456668999999999998761 37899999999999998888888888764
Q ss_pred -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--------C
Q 009622 159 -GAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------G 212 (530)
Q Consensus 159 -g~i~~L~~lL~~-----------------~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--------~ 212 (530)
+++..+...|.. .+......++.++-|+..+.+.... -...+.++.++.++. .
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence 677777666521 1334566788899999866654322 012223444444432 2
Q ss_pred CCchhHHHHHHHHhhhhccCCC------------CCChhhhhchHHHHHHhhc----CC----ChhHHHHHHHHHHHhcc
Q 009622 213 QPKLSMLRNATWTLSNFCRGKP------------QPPFDQVSPALPALAHLIH----SN----DDEVLTDACWALSYLSD 272 (530)
Q Consensus 213 ~~~~~~~~~a~~~L~~L~~~~~------------~~~~~~~~~~l~~L~~ll~----~~----d~~v~~~a~~~l~~l~~ 272 (530)
.+.......++.+|.|+-.... ..........+..|+.+|. .. -.+.....+.+|..++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 2345567777788877721110 0001112334444555543 22 13567778888888887
Q ss_pred CChHHHHHHHHh----------------CcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622 273 GTNDKIQAVIEA----------------GVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 273 ~~~~~~~~~~~~----------------~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~ 314 (530)
......+.+... .+-.+|++++.+..+.++..+...+-.+|.
T Consensus 280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 765443433221 334556666666555566666555555553
No 144
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.38 E-value=0.00052 Score=43.30 Aligned_cols=39 Identities=38% Similarity=0.758 Sum_probs=35.5
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009622 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (530)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~ 187 (530)
++.+..+++.|+++.|+.++.++++.++..++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999996
No 145
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0054 Score=60.50 Aligned_cols=154 Identities=17% Similarity=0.206 Sum_probs=108.1
Q ss_pred HHHHhhcCCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHH
Q 009622 247 ALAHLIHSNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 323 (530)
.+..++.+.|+-++.....+++- ..... .+++..++.. +++.+..+++.|+.+||-+|..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 45566777777777766555432 22221 2667778877 777899999999999999887544
Q ss_pred hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009622 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
..++..+++|..++++.||...+.+|+-.|+++..+. .+..|-.++.+...-||+.|+.+++-+...+++
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 3466777888777799999999999999998654432 345566677777889999999999999887765
Q ss_pred HHHHHHHHcCChHHHHhccCCCCh
Q 009622 404 EQIKFLVIQGCIKPLCDLLVCPDP 427 (530)
Q Consensus 404 ~~~~~l~~~~~l~~L~~lL~~~~~ 427 (530)
+.-..+ .++.+.+.+++..++.
T Consensus 655 ~Lnp~v--~~I~k~f~~vI~~Khe 676 (926)
T COG5116 655 ELNPNV--KRIIKKFNRVIVDKHE 676 (926)
T ss_pred ccChhH--HHHHHHHHHHHhhhhH
Confidence 433222 2455566666554443
No 146
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.36 E-value=0.0017 Score=49.81 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=67.5
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009622 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 381 (530)
|..++.+|+.++.+-+......+ ..+++.++..+.++ +.+||..||.+|.|++......+-..+ ..+++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 45667777777665554433333 36889999999999 999999999999999874333332222 3588999999999
Q ss_pred CchhHHHHHHHHHHHhh
Q 009622 382 AEFDIKKEAAWAISNAT 398 (530)
Q Consensus 382 ~~~~v~~~a~~aL~nl~ 398 (530)
.++.||..| ..|-++.
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998876 5555543
No 147
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=0.0093 Score=61.53 Aligned_cols=222 Identities=15% Similarity=0.138 Sum_probs=150.3
Q ss_pred hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHh
Q 009622 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSYL 270 (530)
Q Consensus 192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l 270 (530)
..+...+..|+...|+.+. ....+........+|.. .-.........+++.+...+.... ..-....+.++.|+
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred HhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 3456677889999999998 45555666666667661 111111122344555555444332 22345678889999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc-CchHHHHHhhcCCCchhHHHHHH
Q 009622 271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY-QALPCLLNLLSGNYKKSIKKEAC 349 (530)
Q Consensus 271 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~ 349 (530)
+..++...+.+++...++.+-.++..+++..+..++..+.||..+..-....+.+. .-++.....+... +.....+++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a 648 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA 648 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence 88777666778888888888888888999999999999999998777666666663 4455555555555 777777888
Q ss_pred HHHHHHhcCCHHHHH-HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 009622 350 WTVSNITAGNREQIQ-AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420 (530)
Q Consensus 350 ~~L~nl~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 420 (530)
.++..|+.-...++. ..--......+..++.++++.++...+..+.|+.. +..+....+.....+..+..
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHH
Confidence 877777765555554 23334577888889999999999999999999544 34555555555555544443
No 148
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.09 Score=56.89 Aligned_cols=232 Identities=11% Similarity=0.051 Sum_probs=143.3
Q ss_pred HHHHhhcCCCchhHHHHHHHHhhhhccCCCCC--ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009622 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP--PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (530)
Q Consensus 205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (530)
.+.....++.+..++..+...|..++..++.. .......+...|.+-+++.....+...+.++..+.+..+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33444435558889999999999999884222 2233456667777777888888888888888888765542223334
Q ss_pred HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC------chHHHHHhhc----CCCchhHHHHHHHHH
Q 009622 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ------ALPCLLNLLS----GNYKKSIKKEACWTV 352 (530)
Q Consensus 283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~------~l~~L~~lL~----~~~~~~v~~~a~~~L 352 (530)
..-+.+.++.+ +..+...+..+..+|-.|+. .+...+.| .+..++..+. .+ ...+......++
T Consensus 737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai 809 (1176)
T KOG1248|consen 737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAI 809 (1176)
T ss_pred HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHH
Confidence 33344444444 77788888888877777762 11111111 3344444443 33 333333323444
Q ss_pred HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHH
Q 009622 353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTV 432 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~ 432 (530)
..+..........-.-.+++..+.-+|.+..+++++.|+.++.-++..-+...... ....+++.+..+++.....++..
T Consensus 810 ~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~k~~~r~K 888 (1176)
T KOG1248|consen 810 THILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDHKIKVRKK 888 (1176)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhhhHHHHHH
Confidence 44443222222112223456677777888899999999999999998755443333 22346778888888778888888
Q ss_pred HHHHHHHHHhhh
Q 009622 433 CLEGLENILKVG 444 (530)
Q Consensus 433 al~~l~~ll~~~ 444 (530)
+-..|..++...
T Consensus 889 vr~LlekLirkf 900 (1176)
T KOG1248|consen 889 VRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHHh
Confidence 888888887654
No 149
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.34 E-value=0.0006 Score=43.01 Aligned_cols=39 Identities=49% Similarity=0.669 Sum_probs=35.1
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
+....+++.|+++.|++++.+++++++..++|+|.|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 466778899999999999998899999999999999863
No 150
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.33 E-value=0.01 Score=51.74 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC-ChHHHHHh
Q 009622 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-GLVPLLAQ 209 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~-~i~~Ll~l 209 (530)
|.+|..++.+++.++...+...+ ..++.+...|.++++.+|.+|+.+|..|...+. +.-.| .+..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 78999999999999986555444 347899999999999999999999999975432 22223 33777888
Q ss_pred hcCCCchhHHHHHHHHhhhhccCC
Q 009622 210 LNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+ .+++++++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 8 8889999999999999998873
No 151
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.093 Score=55.68 Aligned_cols=347 Identities=14% Similarity=0.105 Sum_probs=178.3
Q ss_pred hHHHHHHHHHHHHhhcCC-CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009622 87 SGVQYECTTQFRKLLSIE-RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~-~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 165 (530)
+....-|++.+..+++.- ...+.+...+.=+++.+...++++- -.+|..|+|.++.++..+-.....+ ..++....
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~ 508 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNL--SEALELTH 508 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHH
Confidence 344444555555554321 1233333334445666666777776 7899999999999995332111111 23456666
Q ss_pred HhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcCCCchhHHHHHHH-HhhhhccCCCCCChhhh
Q 009622 166 KLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPFDQV 241 (530)
Q Consensus 166 ~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~~~~~~~~~~a~~-~L~~L~~~~~~~~~~~~ 241 (530)
..|. +.+-.++-.|+.+|..+..+.+.....+.. .+.++.|+++. +..+.+....++. .++.++..-..-.....
T Consensus 509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 6666 566778888999999888776543222211 12444555555 3333333333333 33334433333334445
Q ss_pred hchHHHHHHhhcC---CC---hhHHHHHHHHHHHhc------cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622 242 SPALPALAHLIHS---ND---DEVLTDACWALSYLS------DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 242 ~~~l~~L~~ll~~---~d---~~v~~~a~~~l~~l~------~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L 309 (530)
..+.....+++.+ .+ .+-...|..+|..+. ...++... -+..-+++.+-.+|.+.-..+...++.++
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~ 666 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIV 666 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666677777764 11 222222333333222 12222222 12224455555666666677788888888
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-hCcHHHHHHHHhcC--chh
Q 009622 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIE-ANIIGPLVALLENA--EFD 385 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~~L~~ll~~~--~~~ 385 (530)
..+....++....+ -|+++.+.+.+... ....-....-+|.|+.. +.+.....-.- .-++..+..++.+. ...
T Consensus 667 ~~~t~~~~~Isp~m--W~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~ 743 (1010)
T KOG1991|consen 667 SSLTFLSKEISPIM--WGLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDS 743 (1010)
T ss_pred hhhhhhhcccCHHH--HHHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchH
Confidence 77776554443222 36788888888877 66777788888998776 44321111100 11222333344442 223
Q ss_pred HHHHHHHHHHHhhcCCC--HHHHHHHHHcCChHHHHhccC--CCChHHHHHHHHHHHHHHhhhh
Q 009622 386 IKKEAAWAISNATSGGT--HEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 386 v~~~a~~aL~nl~~~~~--~~~~~~l~~~~~l~~L~~lL~--~~~~~v~~~al~~l~~ll~~~~ 445 (530)
=...|+..+.-++..+. .+++..+ .+...++-+. .++...+..+++.+.+-+-+.+
T Consensus 744 d~~~a~kLle~iiL~~kg~~dq~ipl----f~~~a~~~l~~~~e~s~~~~~~leVvinalyynP 803 (1010)
T KOG1991|consen 744 DCESACKLLEVIILNCKGLLDQYIPL----FLELALSRLTREVETSELRVMLLEVVINALYYNP 803 (1010)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhHhHH----HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCc
Confidence 33445555555544221 2221111 1222222222 2455566667776666554443
No 152
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.32 E-value=0.0024 Score=66.42 Aligned_cols=190 Identities=17% Similarity=0.124 Sum_probs=133.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh--------Hhh----cCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL--------VLS----QGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------i~~----~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
...|+.+|+. +++-..+..++.-+..|++.++.. +.+ ..++|.++..+ ...+...+.+...+|++
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence 3456666654 456666777777777666543221 111 24678888887 35566777788888888
Q ss_pred hccCCCCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---chhHHH
Q 009622 229 FCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLIP 304 (530)
Q Consensus 229 L~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~~~~~ 304 (530)
+..+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++ -+++.++.+-.+.+ ..+|..
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence 877655432 2345778899999999999999999999988777555443333333 46777777766554 568999
Q ss_pred HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 305 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
|+.+|+.+.+..|...-......++..|.+.|.+. ..-||++|..+=.+.
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence 99999999986665554555667899999999988 888999998775544
No 153
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.31 E-value=0.047 Score=55.39 Aligned_cols=295 Identities=13% Similarity=0.094 Sum_probs=147.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh
Q 009622 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (530)
Q Consensus 120 ~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 199 (530)
.++...+ ++ +..+..|+..+.......|+.... ++..++.++.+.+..||.+|+..|..+|.+.+.....
T Consensus 27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--- 96 (556)
T PF05918_consen 27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--- 96 (556)
T ss_dssp HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence 3445444 34 788999999999999877877665 4678999999999999999999999999988765444
Q ss_pred cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc---CCChhHHHHHHHHHHH-hccCCh
Q 009622 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALSY-LSDGTN 275 (530)
Q Consensus 200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~l~~-l~~~~~ 275 (530)
+...|+++| ...++.-...+-++|..|...++ .+.+..+...+. +.|+.+++.++..|.. +..-..
T Consensus 97 --vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 97 --VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp --HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred --HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 466788888 66666666667777777665543 344555555444 5678889988876643 221111
Q ss_pred HHHH--HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----CchhhHHHhhcCchHHHHHhh------cCCCchh
Q 009622 276 DKIQ--AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQTQCVIEYQALPCLLNLL------SGNYKKS 343 (530)
Q Consensus 276 ~~~~--~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL------~~~~~~~ 343 (530)
+... .-.+.-++..+.++|.+-...-......+|..+-.. .....+.+ ++.+.... ... +++
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e 240 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPE 240 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHH
T ss_pred HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHH
Confidence 1111 112223445556666553333333444455544431 12222222 23333222 112 333
Q ss_pred HHHHHHHHHHH----Hhc--CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH
Q 009622 344 IKKEACWTVSN----ITA--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP 417 (530)
Q Consensus 344 v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~ 417 (530)
.......++.. +.. .+.....++.+ .++|.+-.+ +...+...+.++..++..+.......++ .-++..
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L-~~i~~~ 314 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLL-PSIFQL 314 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHH-HHHHHH
Confidence 33222222222 122 23333333333 466655554 4577888889999888766433233322 122333
Q ss_pred HHhccC--CCChH----HHHHHHHHHHHHHhhhhh
Q 009622 418 LCDLLV--CPDPR----IVTVCLEGLENILKVGEA 446 (530)
Q Consensus 418 L~~lL~--~~~~~----v~~~al~~l~~ll~~~~~ 446 (530)
|..++- ...++ .++..+.++..|....+.
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 333332 22333 556666666666655443
No 154
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.045 Score=59.08 Aligned_cols=243 Identities=13% Similarity=0.102 Sum_probs=149.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhH
Q 009622 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLV 197 (530)
Q Consensus 121 Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i 197 (530)
+.....+.++..+|..+..+|..++.. +.......+ ..+...|..-+++.....+...+.+|..|....+ +..+.+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344444443489999999999999985 222211111 1233455555566666677777777777765444 222332
Q ss_pred hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc--CC----CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR--GK----PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~--~~----~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
.. .++.++-.+ +..+...++++..+|..++. .. ..+....+...++.+...+-.+...+....+.++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 344444444 67788899999998888882 11 12223445555665555543333333333355555554
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009622 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (530)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (530)
.........-.-.++++.+..+|.+++..++..|+..+..++..-+...-......+++.+..+++.. ...+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 33222222222336778888889999999999999999999987775543333445788888888877 78888888888
Q ss_pred HHHHhc-CCHHHHHHHHH
Q 009622 352 VSNITA-GNREQIQAVIE 368 (530)
Q Consensus 352 L~nl~~-~~~~~~~~l~~ 368 (530)
+-.++. ...+.+..++.
T Consensus 893 lekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhCHHHHHhhCH
Confidence 888876 33444444444
No 155
>PRK14707 hypothetical protein; Provisional
Probab=97.28 E-value=0.46 Score=54.78 Aligned_cols=401 Identities=16% Similarity=0.107 Sum_probs=217.9
Q ss_pred CHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622 74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
.+..+++.+.. ++.+-+. ++..|...++.+ ....+.+-..|+...|-.+-+-++++..+..+...-..++. .+..
T Consensus 164 ~~~lllNafSKw~~~~~c~~-aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l 240 (2710)
T PRK14707 164 NISLALNAFSKWSDNPDCQA-VAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL 240 (2710)
T ss_pred cHHHHHHHhhcCCCCchHHH-HHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence 34556665553 4444444 444444444442 23334443445444444455556656666655554445554 4444
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhh-h
Q 009622 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWAL-GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-N 228 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L-~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~-~ 228 (530)
+..+ +...+...+..|+. ++.....+++..| ..++ +.+..++.+-.. .+.-.++-|.+-++..+...+...|. .
T Consensus 241 ~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~r 317 (2710)
T PRK14707 241 RNEL-KPQELGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAER 317 (2710)
T ss_pred HHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence 4443 33445566666665 5554555555544 4554 444455554333 34445555556677776666655554 4
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009622 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~ 308 (530)
|..+..........++-..|..+-+-+|..+...+..+|..=...+++..+.+-..|+-..|-.+-+.++......+...
T Consensus 318 l~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 318 LADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred HhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 44432222222233444445555556777777777776655444444444434333443333333444565666666666
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009622 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
|..-..+..+..+.+-..|+-..|-.+-+-+ +..+...++..|.--..++.+..+.+--.++...|-.+-+-+|..+..
T Consensus 398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 6555555666655444445555555555566 777777777777766667677666555556666666666777888888
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHH-HHHHHhhhhhhhhcCCCCchhhHHHhhhhcc
Q 009622 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG-LENILKVGEAEKNLGNTDVNVFTQMIDDAEG 467 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~-l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (530)
.|+.+|.-=... +++.++.|--.++...|..+-+.++......++.. -..+. .... ....|...+.
T Consensus 477 ~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~-~~~~-----------l~~~~~~~~~ 543 (2710)
T PRK14707 477 QTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV-DELQ-----------LRKAFDAHQV 543 (2710)
T ss_pred HHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc-cchh-----------hhhhhhhHHH
Confidence 787777765554 44566666666677777777777776543333322 22222 1111 2333344444
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622 468 LEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 468 ~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
...+.-|..+++.+....+..-|-..+
T Consensus 544 ~~~lnalSKwp~s~~C~~A~~~iA~~l 570 (2710)
T PRK14707 544 VNTLKALSKWPDKQLCAVAASGLAERL 570 (2710)
T ss_pred HHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence 455566666666666655555444443
No 156
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.018 Score=58.93 Aligned_cols=333 Identities=13% Similarity=0.138 Sum_probs=165.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---hhhH
Q 009622 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---SEHT 152 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~---~~~~ 152 (530)
..+.+.|.+++...+..|+..+..+...+ .+ . .+++..++++.-...+.+++.. +.....++-.. ....
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnG-e~-~-----p~Llm~IiRfvlps~~~elKKL-ly~ywE~vPKt~~dgkl~ 94 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNG-ED-L-----PSLLMTIIRFVLPSRNHELKKL-LYYYWELVPKTDSDGKLL 94 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcC-CC-c-----hHHHHHHhheeeccCchHHHHH-HHHHHHHccccCCCcccH
Confidence 46778889999999999998887776654 22 1 1234445554433332555543 33333443321 2222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..++ =+-..+-+=|+++++-+|-..++.|+.+ ..++ ++ ...+|.+...+ .+.+.-++++|..|+..+...
T Consensus 95 ~EMI--Lvcna~RkDLQHPNEyiRG~TLRFLckL--kE~E----Ll-epl~p~Iracl-eHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 95 HEMI--LVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPE----LL-EPLMPSIRACL-EHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHHH--HHHHHHhhhccCchHhhcchhhhhhhhc--CcHH----Hh-hhhHHHHHHHH-hCcchhhhhhhheeehhHHhh
Confidence 2222 1124455567789999999999999887 2222 12 22566677777 888999999999999888765
Q ss_pred CCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHh----------------ccCChHHHHHH-------------H
Q 009622 233 KPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYL----------------SDGTNDKIQAV-------------I 282 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l----------------~~~~~~~~~~~-------------~ 282 (530)
.. .....+-..+-++|.. .|+....+|...|... ..-++...-.+ .
T Consensus 165 ~~----~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~ 240 (948)
T KOG1058|consen 165 FE----HLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE 240 (948)
T ss_pred hh----hhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH
Confidence 21 1111222223333332 2444444433322221 11111000000 0
Q ss_pred HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 009622 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362 (530)
Q Consensus 283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 362 (530)
+...+..+..+|.+.++.++..|..++..++.... ... -....++.++....+-.++--...-|..+...+...
T Consensus 241 ~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-alk-----~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~i 314 (948)
T KOG1058|consen 241 KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-ALK-----AAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKI 314 (948)
T ss_pred hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-HHH-----HHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHH
Confidence 11233444444444444444444444444432111 100 012223333322212233333333333332211111
Q ss_pred HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622 363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~ 442 (530)
-.|++--++++|.++|.+++..++.....++...+.+....+....+.+.--. =...+.+.++..+.++.....
T Consensus 315 -----l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav 388 (948)
T KOG1058|consen 315 -----LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAV 388 (948)
T ss_pred -----HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhh
Confidence 12455667778899999999999999999988766665555444333332222 112233455555566555543
No 157
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.26 E-value=0.043 Score=52.60 Aligned_cols=203 Identities=11% Similarity=0.079 Sum_probs=146.8
Q ss_pred HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh-----hHHHhh--cCchHHHHHhhcCCCchhHHHHHHHH
Q 009622 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ-----TQCVIE--YQALPCLLNLLSGNYKKSIKKEACWT 351 (530)
Q Consensus 279 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~-----~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (530)
+.+...+++..|+..|..-+.+.+..+..+++++....... .+.+.. ..++..|+.-.. ++++--.+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence 44666799999999999999999999999999998764333 223332 234444444443 45555566666
Q ss_pred HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhccCCCChH
Q 009622 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ---GCIKPLCDLLVCPDPR 428 (530)
Q Consensus 352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~l~~L~~lL~~~~~~ 428 (530)
|..++.. +...+.++....+..+.+.+..++.+|...|..++..+.... +.....++.. .....+..+|.+++.-
T Consensus 147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 6666554 566778888889999999999999999999999999987764 3444444443 3467888899999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622 429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 429 v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
++..++..|+.++.......- ....+.+..-+..+..|..++...|+-.|..+..=|.
T Consensus 225 tkrqslkLL~ellldr~n~~v--------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNV--------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHH--------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHchhHHHH--------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 999999999999976655332 3567777778899999999999999999998887443
No 158
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.24 E-value=0.018 Score=48.01 Aligned_cols=130 Identities=13% Similarity=0.109 Sum_probs=103.2
Q ss_pred HHHHHhCcHHHHHHhhCCCC------chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHH
Q 009622 279 QAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWT 351 (530)
Q Consensus 279 ~~~~~~~~i~~L~~lL~~~~------~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~ 351 (530)
..++..+++..|++++.++. ..+...++.++..+..+. ......+...++..+........ +..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45777899999999998866 367777888888887653 33345666778888888887664 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009622 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 409 (530)
Q Consensus 352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 409 (530)
|-+++..++.....+.+.=-++.|+..|+..+++++.+|...+..+...++...++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999998777666666655699999999999999999999999999888776655543
No 159
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.23 E-value=0.017 Score=50.41 Aligned_cols=93 Identities=23% Similarity=0.241 Sum_probs=74.7
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh
Q 009622 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL 335 (530)
Q Consensus 256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 335 (530)
++.++.+++.+++.++...+.... ..++.+...|.++++.+|..|+.+|..+.....-. .+..++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 567899999999999876654433 56789999999999999999999999998643211 123344778888
Q ss_pred hcCCCchhHHHHHHHHHHHHhcC
Q 009622 336 LSGNYKKSIKKEACWTVSNITAG 358 (530)
Q Consensus 336 L~~~~~~~v~~~a~~~L~nl~~~ 358 (530)
+.++ ++.|+..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999764
No 160
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.13 E-value=0.022 Score=54.62 Aligned_cols=202 Identities=14% Similarity=0.132 Sum_probs=138.1
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh-----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR-----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
.+...+.+..|+..|..-+-+.+..+..+++++.......+ +.+... .-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 45556888899999988889999999999999986554332 223221 122222333334466676677777777
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCCchhHHHH
Q 009622 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPA 305 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~~~~~a 305 (530)
.++.............+-.+...+..++=++..+|..++..+...........+.. .++.....+|.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 76664333334445556667777888888999999999988776665555555544 456788889999999999999
Q ss_pred HHHHhHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 306 LRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 306 ~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+..||.+....... ...+-+..-+..++.+|.+. +..++.+|..+.--+.+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 99999998643322 23333556789999999998 99999999999888777
No 161
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.095 Score=53.77 Aligned_cols=167 Identities=18% Similarity=0.186 Sum_probs=108.1
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009622 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (530)
+.+-+++.+.++-+|.....+++---.+.. +.+++..|+..-.++.+.+||+.|.-+|+-++..+++++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~---- 590 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL---- 590 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc----
Confidence 455566777777777776666543222222 235677788775555489999999999999999888753
Q ss_pred HhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622 368 EANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 368 ~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~ 446 (530)
|..+.+|.. .++.||.-++.||+-.+.+..... ++..|-.+.+++..-|++.|+-++..|+.....
T Consensus 591 -----~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 591 -----PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred -----hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 455566654 489999999999998887643221 244444455566666899999998888754322
Q ss_pred hhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009622 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490 (530)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il 490 (530)
. .++-. .|..+.++.+....+++.-.+--.|+
T Consensus 658 ~-------~~pkv-----~~frk~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 658 Q-------LCPKV-----NGFRKQLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred c-------cCchH-----HHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 1 11112 23345667777777777654444444
No 162
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.09 E-value=0.027 Score=53.65 Aligned_cols=192 Identities=19% Similarity=0.192 Sum_probs=123.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--Ch
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TS 149 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~--~~ 149 (530)
.+...+..+.......+..++..+.+++... ...+.+. ...++..+.+.++.+. .+-+..|+.+++-++-. ..
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence 3677888888888999999999999998763 3333332 2446788888888887 56666777766666552 22
Q ss_pred hhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhC---CCchhhhhHhhcCChHHHHH--hhc---------CC
Q 009622 150 EHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAG---DSPRCRDLVLSQGGLVPLLA--QLN---------GQ 213 (530)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~---~~~~~~~~i~~~~~i~~Ll~--ll~---------~~ 213 (530)
.....+++ .+.|.|.+.+... ...++..|+.+|+-++. ..+......++ .+..+.. ... ..
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence 33444443 4578888888763 45677777777776653 22221111111 2221111 111 12
Q ss_pred CchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622 214 PKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 214 ~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
+++.+...|+.+++-|...-+... .......+|.|..+|.++|.+|+..|..+|.-+.
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 245688888888877776544322 2345778999999999999999999988887664
No 163
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.07 E-value=0.0017 Score=51.12 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=59.5
Q ss_pred ChHHHHhcc-CCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009622 414 CIKPLCDLL-VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~l~~L~~lL-~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~ 492 (530)
++..|+.+| .+.|+.++..|+.-|+.+++..+. .+..+++.|+.+.+.+|++|+|++|+..|...+++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-----------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-----------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-----------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-----------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 478888989 456888999999999999988765 37788999999999999999999999999999988
Q ss_pred hC
Q 009622 493 YW 494 (530)
Q Consensus 493 ~~ 494 (530)
+.
T Consensus 113 lm 114 (119)
T PF11698_consen 113 LM 114 (119)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 164
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.01 E-value=0.005 Score=47.16 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=56.8
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009622 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVI 367 (530)
Q Consensus 301 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (530)
++...+++++|++..++.....+.+.|.++.++.....+ .+|-+|+.|.|++.|++.++++....+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 466789999999999998888999999999999887543 2799999999999999999888765444
No 165
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.34 Score=50.32 Aligned_cols=368 Identities=15% Similarity=0.135 Sum_probs=174.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+=.+.++.++.|+..+...-..+..+.... +..-. +...+..-+.... +..+..|++.|+.+..++.-.
T Consensus 65 ~ff~~tKlfQskd~~LRr~vYl~Ikels~is--edvii-----vtsslmkD~t~~~-d~yr~~AiR~L~~I~d~~m~~-- 134 (865)
T KOG1078|consen 65 LFFAITKLFQSKDVSLRRMVYLAIKELSKIS--EDVII-----VTSSLMKDMTGKE-DLYRAAAIRALCSIIDGTMLQ-- 134 (865)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhhccccc--hhhhh-----hhHHHHhhccCCC-cchhHHHHHHHHhhcCcchhH--
Confidence 4455666677777777666555555553321 11110 1223333333334 678889999999888743211
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
++=.++-+.+-+.++.+...++-.=..+..-+.. .+.. ......-. .+.+.-++..++..|..+-..
T Consensus 135 -----~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw------~neiqea~-~s~~~m~QyHalglLyqirk~ 202 (865)
T KOG1078|consen 135 -----AIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRW------ANEVQEAV-NSDNIMVQYHALGLLYQIRKN 202 (865)
T ss_pred -----HHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHH------HHhhhhcc-CcHHHHHHHHHHHHHHHHHhh
Confidence 1112233333334444443333222222111111 1111 11111111 333445667777777776543
Q ss_pred CCCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622 233 KPQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L 309 (530)
+ .-++..++..+... ++-...-..+....+..... ....-+.+.+-.++.+....+...|.+++
T Consensus 203 d--------rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~-----~~~s~~~~fl~s~l~~K~emV~~EaArai 269 (865)
T KOG1078|consen 203 D--------RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQ-----QADSPLFPFLESCLRHKSEMVIYEAARAI 269 (865)
T ss_pred h--------HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcc-----cchhhHHHHHHHHHhchhHHHHHHHHHHH
Confidence 2 11222222222221 11111111111122222111 11123456666778888888999999999
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHH
Q 009622 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 389 (530)
.++......... ..+..|..+++++ ...+|..|..+|..++...|..... .=..|-.++.+.+ |.-
T Consensus 270 ~~l~~~~~r~l~-----pavs~Lq~flssp-~~~lRfaAvRtLnkvAm~~P~~v~~-----cN~elE~lItd~N---rsI 335 (865)
T KOG1078|consen 270 VSLPNTNSRELA-----PAVSVLQLFLSSP-KVALRFAAVRTLNKVAMKHPQAVTV-----CNLDLESLITDSN---RSI 335 (865)
T ss_pred hhccccCHhhcc-----hHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHhCCccccc-----cchhHHhhhcccc---cch
Confidence 888765554332 2677788888888 8899999999999998754432211 1112223333332 333
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHH
Q 009622 390 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE 469 (530)
Q Consensus 390 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (530)
|..|+..+...|+......|.. -+..++.=++++..-++..++.+|...... +... -.+-+..++.+.||++
T Consensus 336 at~AITtLLKTG~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~fp~--k~~~----~m~FL~~~Lr~eGg~e 407 (865)
T KOG1078|consen 336 ATLAITTLLKTGTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLKFPR--KHTV----MMNFLSNMLREEGGFE 407 (865)
T ss_pred hHHHHHHHHHhcchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhhccH--HHHH----HHHHHHHHHHhccCch
Confidence 4555555655555555555442 223333333333333333333333333211 1110 1222445555566654
Q ss_pred HHHHH------hcCCCHHHHHHHHHHHHHhCCCCC
Q 009622 470 KIESL------QTHDNAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 470 ~l~~l------~~~~~~~v~~~a~~il~~~~~~~~ 498 (530)
..... +-..+++-++.+..-+=.|+++-+
T Consensus 408 ~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce 442 (865)
T KOG1078|consen 408 FKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE 442 (865)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc
Confidence 43332 234566666666666666665433
No 166
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=0.051 Score=58.58 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=115.9
Q ss_pred hhhchHHHHHHhhc----CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhc
Q 009622 240 QVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 240 ~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~ 314 (530)
....+.|.++.+.+ ..||+++..|.-+|+.+..-+.. +.+ .-++.|+..+. ++++.+|.+++-++|.++.
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 34567788888874 45799999999999988754432 222 45688888887 6889999999999999987
Q ss_pred CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009622 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 394 (530)
..+...+ ..-+.|...|.+. ++.+|+.|..+|++|...+. +--.|.+..+..++.+++.+++.-|-..+
T Consensus 991 ~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 991 RFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred hcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence 6665442 3456788889988 99999999999999976532 22368999999999999999999999888
Q ss_pred HHhhcCCC
Q 009622 395 SNATSGGT 402 (530)
Q Consensus 395 ~nl~~~~~ 402 (530)
..++..++
T Consensus 1060 ~Els~k~n 1067 (1251)
T KOG0414|consen 1060 KELSSKGN 1067 (1251)
T ss_pred HHhhhccc
Confidence 88887764
No 167
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.86 E-value=1.2 Score=50.06 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=100.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..++..+..+-..++-.|+++|..+....+.--....++.|+. .-+.++. ..+|..|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 456666677777889999999999999876422222233333333 3333344 78999999999988876676655
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
... ..+..-+.++...+|..++.++..+|...|.+-... .+...++.-. .+....+..-++.++..+-..+
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~---~~cakmlrRv-~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV---DMCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH---HHHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence 554 345666667888999999999999998888654331 1233344444 4445558999999999888776
No 168
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.82 E-value=0.0034 Score=49.43 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=61.9
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.++|++||.+|+.|+..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4688999999655488889999999999999878888777788999999999999999999999999988764
No 169
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.82 E-value=0.013 Score=61.36 Aligned_cols=193 Identities=18% Similarity=0.121 Sum_probs=131.4
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-------------ChhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 009622 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-------------PFDQVSPALPALAHLIHSNDDEVLTDACWALS 268 (530)
Q Consensus 202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-------------~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 268 (530)
+...++.+|. ++++-..+..+++-+..+.+.. .......++|.++..+.+.+......-+.+|+
T Consensus 816 ia~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence 3455666662 2444455555666555543210 11234678999999998778888888888888
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc--hhHHH
Q 009622 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--KSIKK 346 (530)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~~v~~ 346 (530)
++..+-+..+-.---..++|.|++.|+-++..++..++.++.-+....+.....-+ ..++|.++.+-.+..+ ..||.
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHH
Confidence 88776554221111236788888999999999999999999888765554332222 3567777777766622 57899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
.|..+|..++...|...-......++..|+..|+++..-||++|..+=.+..
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 9999999999844443333445568889999999888899999987755543
No 170
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.064 Score=55.60 Aligned_cols=243 Identities=14% Similarity=0.063 Sum_probs=155.5
Q ss_pred cCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-hhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHH
Q 009622 146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG-NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224 (530)
Q Consensus 146 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~ 224 (530)
......+...++.|+...|+.+.....+..+-....+|. .+...+. + ....++++.+.+.......-.--++.
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~en~E~L~ 564 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGLENFEALE 564 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHHHHHHHHH
Confidence 334556666778899999999998877777777777776 3322211 1 12356666666633332222334677
Q ss_pred HhhhhccCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCCCCchhH
Q 009622 225 TLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMHPSPSVL 302 (530)
Q Consensus 225 ~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~~~ 302 (530)
++.||+........ ..-...++.+-.++..+++..+..++.++.||...+.-....+.+ ..-++.....+........
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~ 644 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE 644 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence 88888877633332 333444555666677778889999999999998776544444444 2345555555655666667
Q ss_pred HHHHHHHhHhhcCCchhhH-HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009622 303 IPALRTVGNIVTGDDMQTQ-CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 303 ~~a~~~L~nl~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 381 (530)
..++.++..|+......+. ..-.......+..++.++ +..++......+.|+.....+....++....++.+..+-..
T Consensus 645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~ 723 (748)
T KOG4151|consen 645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKL 723 (748)
T ss_pred hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 7777777766655444443 222345677888888888 99999999999999777767777777777777776665443
Q ss_pred CchhHHHHHHHHHH
Q 009622 382 AEFDIKKEAAWAIS 395 (530)
Q Consensus 382 ~~~~v~~~a~~aL~ 395 (530)
.....++.+..+|.
T Consensus 724 ~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 724 NRAPKREDAAPCLS 737 (748)
T ss_pred hhhhhhhhhhhHHH
Confidence 33334444444433
No 171
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.77 E-value=0.17 Score=45.78 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=118.2
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------hCCCC--c---hhHHHHHHHHhHhhcCCchhhHH
Q 009622 256 DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEF-------LMHPS--P---SVLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~l-------L~~~~--~---~~~~~a~~~L~nl~~~~~~~~~~ 322 (530)
+++.++.|+.-|+.--+..++..-.+.. .|.+..|++= +..++ . .-...|+..+-.++. .++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 5666777776666654444443333332 2544444332 33222 1 223445555566666 6666678
Q ss_pred HhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622 323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
++++.+.-.|.+.|.... -+.+|-.+..+++.+.. ++++.+..+.+.+++|..++.++.++.-.|..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 889998888888886542 24688899999999987 6788899999999999999999999988999999999988
Q ss_pred hcCCCHHHHHHHHHc--------CChHHHHh-ccCCCChHHHHHHHHHHHHHHhhhh
Q 009622 398 TSGGTHEQIKFLVIQ--------GCIKPLCD-LLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 398 ~~~~~~~~~~~l~~~--------~~l~~L~~-lL~~~~~~v~~~al~~l~~ll~~~~ 445 (530)
... .....++.+. .++..++. +.+.+++.+...++.+..++.....
T Consensus 167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 873 3444443321 12333332 3456788888888888877775543
No 172
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.72 E-value=0.11 Score=46.16 Aligned_cols=144 Identities=13% Similarity=0.153 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChH
Q 009622 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVP 162 (530)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~ 162 (530)
.-...|+..+.-++|. .+....+.+..+--.|..+|...+ ..-+|..++.+++.+...+ .+....+...++||
T Consensus 94 nRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3445677777777776 566677777775556667776432 4678999999999999844 55666677899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-------CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-------GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-------~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
..++.+...++.-+..|..++..|..++......+... ..+..++..+.+.++..+.+.++.+..+|+.+.
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999988776543322211 133344444446778899999999999998874
No 173
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.69 E-value=0.1 Score=53.03 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=97.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009622 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242 (530)
Q Consensus 163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 242 (530)
.++...+ .+...+..|+..|.....+-|...+. ++..+++++ .+.+..++..|+..|..+|.+.+ ..+.
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~ 95 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVS 95 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHh
Confidence 3444554 56889999999999999998887666 688899999 88899999999999999998743 3457
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC---CCCchhHHHHHHHHhHhhc-CCch
Q 009622 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVT-GDDM 318 (530)
Q Consensus 243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~~~~~a~~~L~nl~~-~~~~ 318 (530)
.+...|+++|.++++.....+=.+|..+...++. +.+..+...+. .++..+|+.++..|..-.. -..+
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence 7888999999998877666666667666544432 22233333333 4677789998887754332 1111
Q ss_pred hhH--HHhhcCchHHHHHhhcC
Q 009622 319 QTQ--CVIEYQALPCLLNLLSG 338 (530)
Q Consensus 319 ~~~--~~~~~~~l~~L~~lL~~ 338 (530)
... .-++.-++..+.++|.+
T Consensus 168 ~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 168 LLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp TS---HHHHHHHHHHHHHHCTT
T ss_pred HhhchHHHHHHHHHHHHHHHHh
Confidence 111 12223345556666654
No 174
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.69 E-value=0.89 Score=46.35 Aligned_cols=287 Identities=13% Similarity=0.097 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009622 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 166 (530)
-..+..|+..++..+...+-.++..+ ....-+++.....++.|..+...|..++........... ..+.+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence 34677788888887766433333332 333345666655578899999999988885443111111 12222
Q ss_pred hhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC--------------------------CCchhHH
Q 009622 167 LLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------------------QPKLSML 219 (530)
Q Consensus 167 lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~--------------------------~~~~~~~ 219 (530)
.+.. ..++....-+.+|..|+.++... ...+.+..+.|...+.. +.+....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 3332 33444445566666666665544 12455566666655510 0133344
Q ss_pred HHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhh
Q 009622 220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFL 294 (530)
Q Consensus 220 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL 294 (530)
...+..+.++.... .........+++..+..+.. +..+.....++..+-.+... +.+... .++..|....
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~ 226 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence 55555666666655 33344555666666555533 33444445555555444322 222222 2334444443
Q ss_pred CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 009622 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQIQAVIE- 368 (530)
Q Consensus 295 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~- 368 (530)
... .....+-.++.||+...-.+ ..+..|..+|..+ .+..+.+-|...+..+..+..+....-+.
T Consensus 227 ~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~ 297 (464)
T PF11864_consen 227 NSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF 297 (464)
T ss_pred ccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence 323 56777888888988643322 2356677777322 14556678888888887755222221121
Q ss_pred h--CcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 369 A--NIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 369 ~--~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
. -+++.+...++.+++.|-.+++..+.++..
T Consensus 298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 2 278889999998888888888888888884
No 175
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.66 E-value=0.074 Score=44.40 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=96.4
Q ss_pred hhhhHhhcCChHHHHHhhcCCCc-----hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHH
Q 009622 193 CRDLVLSQGGLVPLLAQLNGQPK-----LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACW 265 (530)
Q Consensus 193 ~~~~i~~~~~i~~Ll~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~ 265 (530)
+...++..+++..|++++..... .++...++.++..|-...--.-.......+..++..+... |..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 44567788899999999965442 5788889999999888742222233355666666666643 7889999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 266 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 319 (530)
.|-+++.+++.....+.+.=-++.|+..|...+..++..++..+..+....++.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999999888876676666566899999999999999999999888887655433
No 176
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.31 Score=50.31 Aligned_cols=279 Identities=16% Similarity=0.112 Sum_probs=157.1
Q ss_pred cCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHh
Q 009622 115 SGVVPRFVEFLLRE-------DYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN 185 (530)
Q Consensus 115 ~g~v~~Lv~ll~~~-------~~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~n 185 (530)
.|+++.++..+... +++.-.+.|++.+.++.+ ....-...+.+.-+++.++..++++.--++..++..++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 58899999998421 123445667777777765 223333344444566777777888888899999999999
Q ss_pred hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh---hchHHHHHHhhcCCChhHHHH
Q 009622 186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV---SPALPALAHLIHSNDDEVLTD 262 (530)
Q Consensus 186 l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~---~~~l~~L~~ll~~~d~~v~~~ 262 (530)
+..+ +++...-..+.+...+++ .+.+-.++-.|+-|+..+..+. ....... .+.++.|+.+-+.-+.++...
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 9544 334444444667777888 5577788888888888888775 2222222 333444444444445555555
Q ss_pred HHHHH-HHhccC----ChHHHHHHHHhCcHHHHHHhhCCCC------chhHHHHHHHHhHhhc---CCc--hhhHHHhhc
Q 009622 263 ACWAL-SYLSDG----TNDKIQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVT---GDD--MQTQCVIEY 326 (530)
Q Consensus 263 a~~~l-~~l~~~----~~~~~~~~~~~~~i~~L~~lL~~~~------~~~~~~a~~~L~nl~~---~~~--~~~~~~~~~ 326 (530)
++..+ .+.++. ..+....+++ .++.....++.+++ .+-+..|.++|..+.+ .-+ ...-.-+..
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~ 640 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV 640 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 55444 222221 1111111111 22223333333321 1223344444444322 111 111111234
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCc-hhHHHHHHHHHHHhhcCCC
Q 009622 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~nl~~~~~ 402 (530)
...|.+--++.+. -.++-.+|+-.+-+.+-...+.- . +--|+.+.+.+++.+.. ...-.++.-++.|+...|.
T Consensus 641 slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~-p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 641 SLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE-P-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh-h-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 5666666677777 77788888888877765332221 1 11245666666666655 3677888999999988763
No 177
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.60 E-value=0.095 Score=49.99 Aligned_cols=191 Identities=18% Similarity=0.201 Sum_probs=113.0
Q ss_pred HHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh--hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--ChHHHHH
Q 009622 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQA 280 (530)
Q Consensus 205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--~~~~~~~ 280 (530)
..+..+ .+.....+..++..+.++........+. ....++..+.+.++....+-+..++.+++-++-. .......
T Consensus 47 ~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 334444 4556778888888888887665333222 2355677888888877665556666666655433 1222333
Q ss_pred HHHhCcHHHHHHhhCCCC--chhHHHHHHHHhHhhcC---CchhhHHHhhcCchHHH--HHhhcCC---------CchhH
Q 009622 281 VIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIVTG---DDMQTQCVIEYQALPCL--LNLLSGN---------YKKSI 344 (530)
Q Consensus 281 ~~~~~~i~~L~~lL~~~~--~~~~~~a~~~L~nl~~~---~~~~~~~~~~~~~l~~L--~~lL~~~---------~~~~v 344 (530)
+++ .+.+.|..++.++. ..++..++.+|+-++.. ........+ ..+..+ ....+.+ .++.+
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 444 56788888887654 35666777777766542 222222111 123311 1222221 12457
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622 345 KKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 345 ~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
...|+.+-+-|... +...+.... ...+|.|..+|++.+.+||..|..+|.-+...
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77776555555553 332333333 34689999999999999999999999887653
No 178
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.13 Score=50.46 Aligned_cols=149 Identities=12% Similarity=0.195 Sum_probs=96.7
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH-hcCchhHHHHHHHHHHHhhcCCCHHHHH-HHHHc
Q 009622 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL-ENAEFDIKKEAAWAISNATSGGTHEQIK-FLVIQ 412 (530)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~-~l~~~ 412 (530)
-..++ +..+|.-|+..|+|.+.+.|+.+...... ++..++.-| +..+.+|..++..+|..+.......... +++
T Consensus 266 ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l-- 341 (533)
T KOG2032|consen 266 KATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL-- 341 (533)
T ss_pred hccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--
Confidence 33445 67899999999999999877766555443 344444444 4447899999999999887754333222 221
Q ss_pred CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009622 413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~ 492 (530)
.+...+..+.++++++++..+..++..+.+....... ..|.+.+ .++...+.--.+.+++.+...+...+..
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e------~~Fte~v--~k~~~~lllhl~d~~p~va~ACr~~~~~ 413 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE------EFFTEQV--KKRLAPLLLHLQDPNPYVARACRSELRT 413 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch------hhhHHHH--HhccccceeeeCCCChHHHHHHHHHHHh
Confidence 2344577788999999999999999988876543221 1133322 2223333333577888887777777665
Q ss_pred hCC
Q 009622 493 YWL 495 (530)
Q Consensus 493 ~~~ 495 (530)
.++
T Consensus 414 c~p 416 (533)
T KOG2032|consen 414 CYP 416 (533)
T ss_pred cCc
Confidence 544
No 179
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.52 E-value=0.19 Score=51.56 Aligned_cols=193 Identities=13% Similarity=0.172 Sum_probs=138.8
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 319 (530)
....++|.|++++...|..++...+.-+-.....- .+..++..+++.+..-+.+.++.++...+.++..++..-.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 55789999999999999999887666655544332 2345667889999999999999999999999988875322
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCc-HHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI-IGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
...++..++..+..+-.++ +..+|-...-+++.++....... ..++ ...+.+-+.++-..-|..+.+++....
T Consensus 402 -~~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 402 -KRNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred -hhhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 1234445566666555544 78899999999998876532222 2232 345555567776778888888887766
Q ss_pred cCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhh
Q 009622 399 SGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE 447 (530)
Q Consensus 399 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~ 447 (530)
..-.... +...+++.++.+.-+++..++..+..++...+...++.
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 5332222 34467888888888999999999999999888776654
No 180
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.093 Score=54.79 Aligned_cols=223 Identities=12% Similarity=0.151 Sum_probs=137.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009622 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (530)
Q Consensus 164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 243 (530)
.+..+.++-+.++-.++..|..++.... -...+...+++...+..+ .+.|.-+.-+|...+..||...| ..
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~ 802 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------ED 802 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hh
Confidence 3344455667788899999999987543 345566777888889999 88888999999998888887643 55
Q ss_pred hHHHHHHhh-cCCC---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622 244 ALPALAHLI-HSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 244 ~l~~L~~ll-~~~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 319 (530)
++|.+...- ...+ .+.+-.+-.++.++...-.+....... -++..++..+.+++...|..++.++|+++.-....
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 677666633 2211 233333345555555433332222222 45677777788788888999999999998654433
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhcC-chhHHHHHHHHHH
Q 009622 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLENA-EFDIKKEAAWAIS 395 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 395 (530)
....+ ..++..++.+...+...-+|+.|+..+..+..+.....-.+.. ......+....... +..++..|+.++-
T Consensus 882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 22211 2345556666666557889999999999988765432222211 12222333333222 4456666665554
Q ss_pred Hh
Q 009622 396 NA 397 (530)
Q Consensus 396 nl 397 (530)
.+
T Consensus 961 ei 962 (982)
T KOG4653|consen 961 EI 962 (982)
T ss_pred HH
Confidence 43
No 181
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=1.4 Score=45.86 Aligned_cols=299 Identities=15% Similarity=0.098 Sum_probs=166.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHhhhC--CCchhhhhHhhcCChHH
Q 009622 136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--------PSDDVREQAVWALGNIAG--DSPRCRDLVLSQGGLVP 205 (530)
Q Consensus 136 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~~~~~a~~~L~nl~~--~~~~~~~~i~~~~~i~~ 205 (530)
.|+.++..+.+..++.+ + .|+++.+...|.. ++..-.+.|++.++++.. ..+..-.-+++.-+++.
T Consensus 389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 35555555554333221 2 4889999999832 345567788888888865 22222223334334555
Q ss_pred HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009622 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (530)
Q Consensus 206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (530)
++..+ +++..-++..+|..++.+..+ -........+......++.+++-.++..|+-++..+..+. .....+.+.
T Consensus 465 v~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sah 539 (970)
T COG5656 465 VIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAH 539 (970)
T ss_pred hhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhh
Confidence 55555 677777888999999999444 3334445666777777888888888888888888877554 234444444
Q ss_pred cHHHHHHhhCCC---CchhHHHHHHHH-hHhhcCCchhhHHHh---hcCchHHHHHhhcCCCc-----hhHHHHHHHHHH
Q 009622 286 VFPRLAEFLMHP---SPSVLIPALRTV-GNIVTGDDMQTQCVI---EYQALPCLLNLLSGNYK-----KSIKKEACWTVS 353 (530)
Q Consensus 286 ~i~~L~~lL~~~---~~~~~~~a~~~L-~nl~~~~~~~~~~~~---~~~~l~~L~~lL~~~~~-----~~v~~~a~~~L~ 353 (530)
+.+.+-++|.-. +.+....+...+ +..+..-......+. -...+.....++..+.+ .+-+..|...|.
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~ 619 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR 619 (970)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 444444444333 333333333222 111111000111111 11233333344433311 122344555555
Q ss_pred HHhc------CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh
Q 009622 354 NITA------GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP 427 (530)
Q Consensus 354 nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~ 427 (530)
.+.+ ..+...+.+ .....|..--++++.-.++-.+|+..+-+.+... ..+.. +-=|+.+.+.+++.++.+
T Consensus 620 T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~s--keI~p-imwgi~Ell~~~l~~~~t 695 (970)
T COG5656 620 TIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFMS--KEIEP-IMWGIFELLLNLLIDEIT 695 (970)
T ss_pred HHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH--HHhhh-hhhHHHHHHHhcccccch
Confidence 4433 233333332 2345555555667666788888888887776531 11111 223778888888888875
Q ss_pred -HHHHHHHHHHHHHHhhhhhh
Q 009622 428 -RIVTVCLEGLENILKVGEAE 447 (530)
Q Consensus 428 -~v~~~al~~l~~ll~~~~~~ 447 (530)
.....+..++.+++.+|.+.
T Consensus 696 ~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 696 AVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred hhhHHHHHHHHHHHHHhCccc
Confidence 66778888999999988543
No 182
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.47 E-value=0.35 Score=46.17 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=109.7
Q ss_pred CCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC-CCchh
Q 009622 116 GVVPRFV-EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG-DSPRC 193 (530)
Q Consensus 116 g~v~~Lv-~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~-~~~~~ 193 (530)
+++..|+ ..+.+.+ +.+|..|+.||+-.+--+.+.... .++.+.+.++..+..++..|+.++..+.. ++...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3455554 6777887 899999999999999866644433 35678888877789999999999998873 22211
Q ss_pred hhhH-------hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC----CChhHHHH
Q 009622 194 RDLV-------LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTD 262 (530)
Q Consensus 194 ~~~i-------~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~ 262 (530)
-+.. .....+..+.+.+ .+.+++++..++..++.|........ ...++..|+-+--+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1111 1233555666666 56688999999999999887663333 23334433333222 24566665
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC
Q 009622 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297 (530)
Q Consensus 263 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 297 (530)
....+-..+.....+ +..+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 555665566555544 4455557777777766553
No 183
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.18 Score=52.73 Aligned_cols=220 Identities=10% Similarity=0.105 Sum_probs=135.9
Q ss_pred CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009622 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (530)
Q Consensus 212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 291 (530)
.++.+.++.+++..+..+.+...........+++......+++.|+-+--+++..+..+++-.++ .+++.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence 45567788999999999998765666677788999999999999999888888888777765433 4556666
Q ss_pred H-hhCCCC---chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009622 292 E-FLMHPS---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367 (530)
Q Consensus 292 ~-lL~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (530)
+ ..+..+ .+.+...-.++++++..-.+....... -++..++...+++ +...|..++..++++|....-.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 6 333221 233333345555555433322222222 4566677777766 788899999999999874332222222
Q ss_pred HhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHH--HHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHh
Q 009622 368 EANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFL--VIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILK 442 (530)
Q Consensus 368 ~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~ 442 (530)
. .++..++.+...+ .+-+|+.|+..+..+..+...+....+ .-.+....+..+.... +..+...+..++..+-.
T Consensus 887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 1 2455555555444 688999999999999886554443322 1123333444444333 33344444445544433
No 184
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.46 E-value=0.35 Score=46.14 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=114.9
Q ss_pred hchHHHHH-HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc-hh
Q 009622 242 SPALPALA-HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQ 319 (530)
Q Consensus 242 ~~~l~~L~-~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~ 319 (530)
.+++..++ +.+.+.++.++..++.+++-.+--+..... ..++.+...+..++..++..|+.++..+....+ ..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 36665544 788899999999999999988755543222 345667777777788999999999998864322 11
Q ss_pred hHH-------HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC----chhHHH
Q 009622 320 TQC-------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA----EFDIKK 388 (530)
Q Consensus 320 ~~~-------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~----~~~v~~ 388 (530)
... .-...++..+.+.+.+. +++++..|+-.++.+.....-.- ...++..|+-+.-++ +.++|+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 111 11246788899999998 99999999999999876321110 123444454444332 467888
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009622 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 425 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 425 (530)
--...+-..+.. .+++ +..+...+++.+..+.+..
T Consensus 175 ~L~~Ffp~y~~s-~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 CLSVFFPVYASS-SPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHcC-CHHH-HHHHHHHHHHHHHHHHhCc
Confidence 777777777775 3344 3445566777777766543
No 185
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.44 E-value=0.86 Score=44.84 Aligned_cols=222 Identities=13% Similarity=0.133 Sum_probs=131.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCC
Q 009622 136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQP 214 (530)
Q Consensus 136 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~ 214 (530)
.|++.|-.+....+.....+.+.+++..++..++..-....+. .-...-.... +..+..... ...+ ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence 4677888888877788888899999999999885421111110 0000000010 111111110 0000 111
Q ss_pred chhHHHHHHHHhhhhcc-CCC--CCCh-hhh-hchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009622 215 KLSMLRNATWTLSNFCR-GKP--QPPF-DQV-SPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (530)
Q Consensus 215 ~~~~~~~a~~~L~~L~~-~~~--~~~~-~~~-~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (530)
...+.+..+.++..+.. ... .... ... ..++..|...+++. .+.+...++..+..+..+.+.....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 23444555555555555 221 1111 222 44555677777655 5788899999999999998888899999999
Q ss_pred HHHHHHhhC-CC---CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHH-HHHHHHHH----Hh
Q 009622 287 FPRLAEFLM-HP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKK-EACWTVSN----IT 356 (530)
Q Consensus 287 i~~L~~lL~-~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~-~a~~~L~n----l~ 356 (530)
++.+++.+. .. +.++....-.+++.||- +....+.+.+.+.++.+++++.+.... ..+. ..+..+++ |.
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~ 231 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM 231 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999988 43 45566666677888876 445556788889999999999876211 1222 34444443 44
Q ss_pred cCCHHHHHHHHH
Q 009622 357 AGNREQIQAVIE 368 (530)
Q Consensus 357 ~~~~~~~~~l~~ 368 (530)
++.|.....+++
T Consensus 232 RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 232 RHHPSLKPDIID 243 (379)
T ss_pred ccCHHHHHHHHH
Confidence 555554444443
No 186
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.37 E-value=0.53 Score=41.98 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-----CchhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHH
Q 009622 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-----SPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCL 332 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~~~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L 332 (530)
-..+++..+..++++++. ...++++.+--.+..+|... .+-.|..+++.+|.++..++ +....++..+++|..
T Consensus 95 RVcnaL~LlQcvASHpdT-r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDT-RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcCcch-HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345666667777776654 45688888877888888654 35688999999999997655 455666789999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------hCcHHHHH-HHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009622 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--------ANIIGPLV-ALLENAEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~i~~L~-~ll~~~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
++.+..+ +..-+..|..++..+...+ ....++.+ ..++..++ .+.+.+++++-+.++.+..+++. ++
T Consensus 174 Lrime~G-SelSKtvA~fIlqKIlldD-~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd--np 249 (293)
T KOG3036|consen 174 LRIMESG-SELSKTVATFILQKILLDD-VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD--NP 249 (293)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHhhcc-ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--CH
Confidence 9999999 8889999999999987643 22222221 12233333 34456689999999999999988 44
Q ss_pred HHHHHH
Q 009622 404 EQIKFL 409 (530)
Q Consensus 404 ~~~~~l 409 (530)
..+..+
T Consensus 250 rar~aL 255 (293)
T KOG3036|consen 250 RARAAL 255 (293)
T ss_pred HHHHHH
Confidence 544443
No 187
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.28 Score=48.23 Aligned_cols=267 Identities=15% Similarity=0.124 Sum_probs=142.4
Q ss_pred CChHHHHHhh----CCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622 159 GAVPIFVKLL----YSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 159 g~i~~L~~lL----~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
|.+..++..+ .+++..++..|+..|+|.+...|. ++.. ..-.+..++.-|.++.+.++...++.+|..+....
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 4454444444 347778999999999999988553 2222 22345566666646667899998988888877654
Q ss_pred CCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-HHHH---HHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009622 234 PQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAV---IEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 234 ~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~---~~~~~i~~L~~lL~~~~~~~~~~a~~~ 308 (530)
..... ...-.+.-.+..+..+.+++++..+...++.++...... ...+ +..+ ...++-.+.+.++.+ ..||+.
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~-~~~lllhl~d~~p~v-a~ACr~ 409 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKR-LAPLLLHLQDPNPYV-ARACRS 409 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhc-cccceeeeCCCChHH-HHHHHH
Confidence 32222 222334445667788899999999998888876322111 1111 2212 233444455555543 455666
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHH-HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK-EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
....+..+- ..+.. .++++. .+ ...-+..+. ..-|+ ..+....++....+.. ....++++.=+.+|
T Consensus 410 ~~~~c~p~l-~rke~--~~~~q~---~l-d~~~~~~q~Fyn~~c-~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr 476 (533)
T KOG2032|consen 410 ELRTCYPNL-VRKEL--YHLFQE---SL-DTDMARFQAFYNQWC-IQLNHIHPDILMLLLT-----EDQHIFSSSWEQVR 476 (533)
T ss_pred HHHhcCchh-HHHHH--HHHHhh---hh-HHhHHHHHHHHHHHH-HHHhhhCHHHHHHHHH-----hchhheecchHHHH
Confidence 555543211 11111 112221 11 110111111 12231 1222223333222221 12223333333555
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~ 442 (530)
..|...-.++..+-.+..+.+.-...+...+..+...+-+++...+..++..+..
T Consensus 477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5555555555554444555444334456678888888999999999999887764
No 188
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.24 E-value=2.9 Score=47.18 Aligned_cols=258 Identities=14% Similarity=0.115 Sum_probs=137.8
Q ss_pred hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHH
Q 009622 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAE 292 (530)
Q Consensus 216 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~ 292 (530)
..+..+.+.++....---+.+...+...+=..|.+++-..+......|..|++.++.. .-.....++. ..-..++
T Consensus 1094 ~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~--~~~k~le 1171 (1692)
T KOG1020|consen 1094 AQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFS--CYLKLLE 1171 (1692)
T ss_pred HHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHH--HHHHHHH
Confidence 3444444444444333333444444455555555555555555566677777777653 2222222221 1112222
Q ss_pred hhCCC--------CchhHHHHHHHHhHhhcCCch-----------hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622 293 FLMHP--------SPSVLIPALRTVGNIVTGDDM-----------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 293 lL~~~--------~~~~~~~a~~~L~nl~~~~~~-----------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
.+++. ........+.++|-++++.+. +....+..+++..|.-..++. +..+|..|...++
T Consensus 1172 ~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg 1250 (1692)
T KOG1020|consen 1172 VIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLG 1250 (1692)
T ss_pred HHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHH
Confidence 22332 224566788889988873220 111234556777777777777 8999999999999
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH--HHHHHHHHHHhhcCC---------------CHHHHHHHH------
Q 009622 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDI--KKEAAWAISNATSGG---------------THEQIKFLV------ 410 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v--~~~a~~aL~nl~~~~---------------~~~~~~~l~------ 410 (530)
.+|...+.. +....+...+...+.+.+... +..++..+.-+.... ..+..+.+.
T Consensus 1251 ~~ci~hp~l---~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~ 1327 (1692)
T KOG1020|consen 1251 FICIQHPSL---FTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGM 1327 (1692)
T ss_pred HHHhhCchh---hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhccccccc
Confidence 999855442 333334444455554442221 333333333222110 112222221
Q ss_pred -HcCC--------hHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHH
Q 009622 411 -IQGC--------IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAE 481 (530)
Q Consensus 411 -~~~~--------l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 481 (530)
..|+ ++.+++..-+.|..++..|+..+..++..|--. + -..+..|-.|-.++.+.
T Consensus 1328 ~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVh---------P-------~~cvPtLIAL~Tdp~~~ 1391 (1692)
T KOG1020|consen 1328 GSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVH---------P-------VHCVPTLIALETDPSQA 1391 (1692)
T ss_pred ccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCC---------c-------cchhhhheeecCChHHH
Confidence 1111 222333223577888999999998888776321 1 12356777777788888
Q ss_pred HHHHHHHHHHHhCC
Q 009622 482 IYEKSVKLLETYWL 495 (530)
Q Consensus 482 v~~~a~~il~~~~~ 495 (530)
+++.|..++...+.
T Consensus 1392 ~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1392 IRHVADELLKEIDE 1405 (1692)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876544
No 189
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.24 E-value=0.22 Score=48.51 Aligned_cols=175 Identities=14% Similarity=0.187 Sum_probs=110.7
Q ss_pred HHHHHHHHHHH-HhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHh
Q 009622 173 DDVREQAVWAL-GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL 251 (530)
Q Consensus 173 ~~~~~~a~~~L-~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l 251 (530)
.+-+..|+.-| .-+|.++...-.... ..++..+++.+.++.+...+.-|+..|..+|+..+..-+....-++..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 34455555534 344444322211111 1245667777856688999999999999999998766555555566666666
Q ss_pred hcCCChhHHHHHHH-HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009622 252 IHSNDDEVLTDACW-ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (530)
Q Consensus 252 l~~~d~~v~~~a~~-~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~ 330 (530)
-.+.++++...|.. ++.-++...+.. .+..+..++...+......++.++..++..-....-..+-..+.|
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAP 451 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence 66665555444433 333444444422 123355555557777777888888888765443222233457899
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 331 CLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 331 ~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.+++-..+. +..||+.|.++|..+..
T Consensus 452 ~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 452 CVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 999999998 99999999999988864
No 190
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.23 E-value=0.18 Score=45.68 Aligned_cols=139 Identities=14% Similarity=0.191 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-----chhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHHH
Q 009622 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLL 333 (530)
Q Consensus 260 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~ 333 (530)
..+++..+..++.+++. ...++++.+.-.|.++|+..+ +.+|..+++++|.++..++ +....+++.+++|..+
T Consensus 67 VcnaLaLlQ~vAshpet-r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 67 VCNALALLQCVASHPET-RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHH-TTT-HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHcChHH-HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 34566666677776654 466889999888999987653 4578899999999997544 5667778999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------hCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCC
Q 009622 334 NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--------ANIIGPLVAL-LENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 334 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
..+..+ +.-.|..|..++..+..++ ....++.+ ..++..++.. ...+++++-+.++.+...++.+.
T Consensus 146 r~me~G-selSKtvAtfIlqKIL~dd-~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 146 RIMEFG-SELSKTVATFILQKILLDD-VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHS--HHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHhc-cHHHHHHHHHHHHHHHcch-hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 999998 8888889999998887642 22222221 1244444443 45558899999999999999853
No 191
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.22 E-value=0.51 Score=50.34 Aligned_cols=197 Identities=20% Similarity=0.222 Sum_probs=119.9
Q ss_pred HHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHH--HHHHhhcCCCh-h
Q 009622 182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDD-E 258 (530)
Q Consensus 182 ~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~--~L~~ll~~~d~-~ 258 (530)
+|+++....+.....+.+.+++..+...+......++...++..+.+++...+..........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45577777787888889999999999999766788999999999999998764433332222222 33333333333 6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC
Q 009622 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 338 (530)
.-..++..++.+....++........ .+......++..+..... ......-+.+.+..++..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~---------------~~~~~l~e~i~~~~~~~~---~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRN---------------SVNELLVEAISRWLTSEI---RVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchH---------------HHHHHHHHHhhccCccce---eehhhhhcchhHHHHhcc
Confidence 66677777777665543311111111 111222222222222111 111121222225566665
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHH
Q 009622 339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISN 396 (530)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~n 396 (530)
+..+..+..|.|++.+++..+++..+.+.+.++++.+.+.-... ...++.++...+.+
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 55788999999999999998888888888889988887764333 45566665555443
No 192
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.17 E-value=1.4 Score=47.45 Aligned_cols=239 Identities=17% Similarity=0.179 Sum_probs=136.1
Q ss_pred hchHHHHHHhhcC-----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC----CCC----chhHHHHHHH
Q 009622 242 SPALPALAHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM----HPS----PSVLIPALRT 308 (530)
Q Consensus 242 ~~~l~~L~~ll~~-----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~----~~~~~~a~~~ 308 (530)
.+.+..++.++.+ .+.+....++..|.+++.- ..+.+.+++.+.++.|+..+. .+. ..+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3445555555543 2345666667777776655 455677888999999888874 333 5666777777
Q ss_pred HhHhhcCCchhhHHH----h--------hcCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009622 309 VGNIVTGDDMQTQCV----I--------EYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373 (530)
Q Consensus 309 L~nl~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 373 (530)
+..+........... . ....+..|++.+.+.. ++.+....+.+|.+++.++++..+.+++ .+.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence 666654322111000 0 1123666666666542 5788999999999999999998888876 233
Q ss_pred HHHHHHhcC--chhHHHHHHHHHHHhhcCC-----CHHHHHHHHHcCChHHHHhccCCCC--------hH--------HH
Q 009622 374 PLVALLENA--EFDIKKEAAWAISNATSGG-----THEQIKFLVIQGCIKPLCDLLVCPD--------PR--------IV 430 (530)
Q Consensus 374 ~L~~ll~~~--~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~~--------~~--------v~ 430 (530)
..+++=.-+ ...--...+..++.++.+- .......+++.|++...+++|...- ++ -+
T Consensus 273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 333322111 0000122255555555422 2356677788899888877774322 11 12
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHHhCC
Q 009622 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~~~~ 495 (530)
..+|..|.-+....+. ...+...+++..+..| +.+....|-..|..+|+.+-+
T Consensus 353 p~iL~lL~GLa~gh~~------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 353 PYILRLLRGLARGHEP------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHhcCHH------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2334444433333222 1222335566666666 344577788888888876654
No 193
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.15 E-value=1.9 Score=46.48 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=124.6
Q ss_pred hCCChHHHHHhhCC-----CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCc----hhHHHHHHH
Q 009622 157 DHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPK----LSMLRNATW 224 (530)
Q Consensus 157 ~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~----~~~~~~a~~ 224 (530)
+.|++..++.++.+ ....+....+..|...+.- +.+|+.+++.++++.|+..+. .... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 45788888888865 2345556666666655544 568999999999999999884 2322 566666666
Q ss_pred HhhhhccCCCCCChh-------------hhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 009622 225 TLSNFCRGKPQPPFD-------------QVSPALPALAHLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287 (530)
Q Consensus 225 ~L~~L~~~~~~~~~~-------------~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i 287 (530)
++-.+.......... ....-+..++..+.+. ++.+....++.|.+|+.+.++..+.+++
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~---- 269 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE---- 269 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH----
Confidence 655554432111100 1223355666666543 6889999999999999998887776654
Q ss_pred HHHHHhhCCC-----CchhHHHHHHHHhHhhcCCc------hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622 288 PRLAEFLMHP-----SPSVLIPALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 288 ~~L~~lL~~~-----~~~~~~~a~~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
.+-+.++-+ ...--...+.+++.++.+-+ ...+.+++.|++...+..|... -|...
T Consensus 270 -~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~~----------- 336 (802)
T PF13764_consen 270 -HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSLK----------- 336 (802)
T ss_pred -HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Ccccc-----------
Confidence 223333211 11111233666666665432 4566778889999888888765 44331
Q ss_pred cCCHHHHHHHHHhCcHHHHHHHHh
Q 009622 357 AGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
....+.....+....+|..+.+|.
T Consensus 337 ~~~s~eWk~~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 337 NTDSPEWKEFLSRPSLPYILRLLR 360 (802)
T ss_pred cCCCHHHHHHhcCCcHHHHHHHHH
Confidence 112333444555566666666554
No 194
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.06 E-value=0.39 Score=46.95 Aligned_cols=175 Identities=11% Similarity=0.120 Sum_probs=106.7
Q ss_pred chhHHHHHHHHhh-hhccCCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009622 215 KLSMLRNATWTLS-NFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (530)
Q Consensus 215 ~~~~~~~a~~~L~-~L~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 292 (530)
..+-+..|+.-|. -+|.+.-..-......++..++..|.. .+..+..-|++.|..++.+.+.....-.+ -.+..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence 3444455555333 334432222223446677778888876 67788889999999999876644321111 23445555
Q ss_pred hhCCCCchhHHHHHHH-HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhC
Q 009622 293 FLMHPSPSVLIPALRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEAN 370 (530)
Q Consensus 293 lL~~~~~~~~~~a~~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~ 370 (530)
.-.+....+...|... +.-+++..+... +..+..++... +...-..+...+..++.. +.+....++ ..
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~d 448 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PD 448 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hh
Confidence 5555555555555444 334444444333 34455555555 555555666677777763 334333333 36
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
+.|.+++..++.+..||+.|+++|..+...
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 899999999999999999999999988763
No 195
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.04 E-value=0.6 Score=47.91 Aligned_cols=176 Identities=18% Similarity=0.147 Sum_probs=121.1
Q ss_pred HhhcCCChHHHHHHHHHHH--HhhcCCCCCcHHHHHHcCCHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCChhhHHH
Q 009622 80 AGVWSNDSGVQYECTTQFR--KLLSIERSPPIEEVIRSGVVPRFVEFLLRE---DYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 80 ~~l~s~~~~~~~~a~~~l~--~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~---~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
..+...+.+....|...++ .++-++ .-+-+..-|.+.+...++ +++.++..|.-+|..+..-+.+.+.
T Consensus 860 ~~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~- 932 (1128)
T COG5098 860 SRIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS- 932 (1128)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 3445455555556665554 333332 112234456666666552 2489999999999988775555443
Q ss_pred HHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622 155 VIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 155 ~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
..+|.|+..+. +++|.+|.+++-.++.++..-....+. ....|.+-| .+.+..+++.++.++.+|.-..
T Consensus 933 ----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag 1002 (1128)
T COG5098 933 ----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred ----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc
Confidence 34799999997 699999999999999886433222222 355677777 7788999999999999987653
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
...+.|-++.+..+|.++|.++..-|-..+..++..+..
T Consensus 1003 ----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 1003 ----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred ----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence 244578889999999999998877777777777765443
No 196
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.99 E-value=0.087 Score=44.73 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=99.8
Q ss_pred HHHHHhhC--CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009622 288 PRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 288 ~~L~~lL~--~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
+.++..|. ...+.++..+.-++..+.. ....-....+-+.+..++... +.+-...+..+++.+.-+.++....
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34444444 3566788888888888842 112222333445555666655 6667888899999998888888777
Q ss_pred HH-HhCcHHHHHHHHh--cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChH-HHHHHHHHHHH
Q 009622 366 VI-EANIIGPLVALLE--NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPR-IVTVCLEGLEN 439 (530)
Q Consensus 366 l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~-v~~~al~~l~~ 439 (530)
++ ..|+++.+..++. ..+..++..++.+|..-+.. +.+...+...+++.|-..++ +++.. ++..++-+|.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 76 6789999999998 67889999999999887773 44555566677999999996 44555 66666666544
No 197
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.90 E-value=0.014 Score=34.10 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=26.2
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
++|.+++++.+++++||..|+++|+.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
No 198
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.83 E-value=0.32 Score=44.38 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhh
Q 009622 386 IKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD 464 (530)
Q Consensus 386 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~ 464 (530)
....|+.+|.-++.- .+.....+.+...+..|+++|+ ...+.+...++.+|..++-..+. ..+.|++
T Consensus 107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~-----------N~r~FE~ 174 (257)
T PF08045_consen 107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE-----------NQRDFEE 174 (257)
T ss_pred HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH-----------HHHHHHH
Confidence 344556666666654 3456667778899999999994 56788999999999999877665 3678999
Q ss_pred hccHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCCCCCC
Q 009622 465 AEGLEKIESLQT--HDNAEIYEKSVKLLETYWLDDEDET 501 (530)
Q Consensus 465 ~~~~~~l~~l~~--~~~~~v~~~a~~il~~~~~~~~~~~ 501 (530)
.+|+..+..+.. +.+.++.-++.+.+--|...+....
T Consensus 175 ~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~ 213 (257)
T PF08045_consen 175 LNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSI 213 (257)
T ss_pred hCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCC
Confidence 999999999864 4678899999999988887666543
No 199
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.75 E-value=0.071 Score=45.34 Aligned_cols=147 Identities=11% Similarity=0.057 Sum_probs=91.7
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
.+++.|+++|+.+.+..+|.+++++|+.|..-+|...+.+... .+.-. -...+........... .+... .+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~----~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPS----SE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCc----hH
Confidence 4678899999888769999999999999999777665533221 11000 0111112222222111 11111 12
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
...-..++..|++.+.+..-..-...++.++.++..............++|.++..+++.+...++..++-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2233346778888885544455555677777777755555557778899999999999887788887777776653
No 200
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.75 E-value=0.099 Score=37.42 Aligned_cols=66 Identities=26% Similarity=0.380 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009622 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQG 413 (530)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 413 (530)
.+.|.|+++++++. +..+..+.+.++++.++++.... ...+|-.|.++|+-++. +.+..+.|-+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999874 56666677789999999998755 58899999999999988 556666665544
No 201
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.67 E-value=1.8 Score=46.37 Aligned_cols=174 Identities=13% Similarity=0.194 Sum_probs=111.9
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--HHHHHHHhCcHHHHHHHHhcCc-h
Q 009622 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--QIQAVIEANIIGPLVALLENAE-F 384 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--~~~~l~~~~~i~~L~~ll~~~~-~ 384 (530)
++.++...++.....+++.+++..+...+..-....++..+...++|++...+. .......... ..+..++...+ .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence 788899889999999999999999999998765778999999999999873221 1111111111 12222333333 3
Q ss_pred hHHHHHHHHHHHhhcCCCH--------HHHHHH--------------HHcCChHH-HHhccC-CCChHHHHHHHHHHHHH
Q 009622 385 DIKKEAAWAISNATSGGTH--------EQIKFL--------------VIQGCIKP-LCDLLV-CPDPRIVTVCLEGLENI 440 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~~~~--------~~~~~l--------------~~~~~l~~-L~~lL~-~~~~~v~~~al~~l~~l 440 (530)
+.-..|+..|..+...++. ...+.+ .....+.+ +..++. +..+..+..|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 7777788888887765320 111111 11112223 444443 44556778888888888
Q ss_pred HhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 009622 441 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKLLETY 493 (530)
Q Consensus 441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~v~~~a~~il~~~ 493 (530)
+...+. ++..+.+.|++..+.++.. ....++...+..+++..
T Consensus 653 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 653 LEQNKE-----------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred HHcChh-----------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 876544 5777888999999888732 23666777777777654
No 202
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.67 E-value=0.68 Score=45.40 Aligned_cols=275 Identities=16% Similarity=0.134 Sum_probs=142.1
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh-hccCCCCCCh
Q 009622 161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPPF 238 (530)
Q Consensus 161 i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~-L~~~~~~~~~ 238 (530)
+.+++.-+.+ .+..+|..++--|+.-+.+.. ++..+...|....+++.+...++..+...++.++.. ++.+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~-Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQ-FRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHH-HHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4566666663 456788888888888887654 899999999999999999655554355555444444 4444444444
Q ss_pred hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC---------CCCchhHHHHHHH
Q 009622 239 DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---------HPSPSVLIPALRT 308 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~~~~~a~~~ 308 (530)
......+..+..++... ...+...... .......... ...+..+.+.+. +....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~-------~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDS-------SRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhh-------hhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 34455666667776611 0000000000 0000001010 012222222221 1222345556666
Q ss_pred HhHhhc--------------CCchhhHHHhhcCchHHHHHhhcC----C------Cc-----hhHHHHHHHHHHHHhcCC
Q 009622 309 VGNIVT--------------GDDMQTQCVIEYQALPCLLNLLSG----N------YK-----KSIKKEACWTVSNITAGN 359 (530)
Q Consensus 309 L~nl~~--------------~~~~~~~~~~~~~~l~~L~~lL~~----~------~~-----~~v~~~a~~~L~nl~~~~ 359 (530)
+-.++. ..+...+.+...|++..++.++.. . .. ...-..+.++|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 555531 011223445567788888888752 1 01 123345677777777655
Q ss_pred HHHHHHHHH--hCcHHHHHH----HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH---HH----hccC---
Q 009622 360 REQIQAVIE--ANIIGPLVA----LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP---LC----DLLV--- 423 (530)
Q Consensus 360 ~~~~~~l~~--~~~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~---L~----~lL~--- 423 (530)
.++-.+++. .+.++.+.. ........+...++..+.|++.+ +++.+..+...++... +. .++.
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 444444443 233333332 22223345577889999999886 4344444443322211 11 1111
Q ss_pred ----CCChHHHHHHHHHHHHHHhhhh
Q 009622 424 ----CPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 424 ----~~~~~v~~~al~~l~~ll~~~~ 445 (530)
...-++...+++++.|+..+.+
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 1122466677777777776553
No 203
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.67 E-value=1.1 Score=46.13 Aligned_cols=110 Identities=20% Similarity=0.200 Sum_probs=81.4
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009622 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 318 (530)
..+.+.+..+++...+++..|+..+|..|..+...... +...+-.++...+..-+.+..+.+|..|+.+|+.+=.....
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 36677788888888899999999999999988864322 22233336777888888889999999999999998632211
Q ss_pred hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009622 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
. +..+...+..+++++++++||+.|...+.+
T Consensus 160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 1 234677888888887789999987655543
No 204
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.65 E-value=0.41 Score=49.28 Aligned_cols=258 Identities=14% Similarity=0.132 Sum_probs=165.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHH
Q 009622 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
+-.+++.++..+.+.+..-...|.+.+.. --+.++..-++|.|+..+..++ ...+. ..+..++..... .+
T Consensus 256 ~~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~l-tpl~k~~k~ld~-~e--- 326 (690)
T KOG1243|consen 256 TLLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFL-TPLFKLGKDLDE-EE--- 326 (690)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhh-hHHHHhhhhccc-cc---
Confidence 34555666667777776666666664432 2234555667788777766554 11222 222222333221 22
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+..+++|.|+++++.++..+|-.-+.-+-+.... ..+.+++..+++.+..-+ .+++..++...+.++..|+..-
T Consensus 327 --yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL 400 (690)
T KOG1243|consen 327 --YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKL 400 (690)
T ss_pred --cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhh
Confidence 5568899999999999998887766666555443 334556667888888888 8889999999999998887653
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc-HHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV-FPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
... ......+..+..+-...+..++.+..-|++.++...... +..++ ...+...+.++-..-|..++..+...
T Consensus 401 ~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 401 SKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred chh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence 222 233455666666655567888888888888887653221 12233 23344456666667788888877766
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
...-+ +.-+...++|.+..+..+. +..+|..|-.++...-.
T Consensus 475 ~~~~~---~~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 475 QEYFD---QSEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccccc---hhhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 54433 2234567889999988888 88888888777665543
No 205
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.63 E-value=0.36 Score=51.72 Aligned_cols=188 Identities=14% Similarity=0.061 Sum_probs=133.8
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009622 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (530)
Q Consensus 161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 240 (530)
.+.+..-+.++++.-+..++..+..+..... ........+.+..+++....+.+..+...++.+|..++..-.......
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 3445555566788888888888888776654 112222345566667776678899999999999999998775556666
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch-h
Q 009622 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-Q 319 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~ 319 (530)
...+.|.+++-+......++..+..++-.++.... -....+.+...+.+.++.++..+...+.......+. .
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 78888999998888777777766666544443211 114567788899999999999988888777765442 1
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
...-.-.++++.++....+. +.+||..|..+++-+..
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred cchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 11112246788888888888 99999999999888766
No 206
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.63 E-value=0.071 Score=54.23 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=105.8
Q ss_pred cHHHHHHhhCC----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009622 286 VFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 286 ~i~~L~~lL~~----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (530)
+.|.+.+...+ +++.++..|.-+|..+.+-+.+.. ..-+|.++..+...++|.+|.+|...++.++.....
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 44555555554 577888888888888766444333 245788999998444999999999999998764333
Q ss_pred HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll 441 (530)
.+. ..-..|.+-|.+.+..||+.+..++.++...+- +.-.|-+..+..+|.++|..+...|-..+..+.
T Consensus 968 ~~d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 968 TAD-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhH-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 222 234577888888899999999999999988652 234588889999999999998888777776666
Q ss_pred hhhh
Q 009622 442 KVGE 445 (530)
Q Consensus 442 ~~~~ 445 (530)
+...
T Consensus 1037 ~KdN 1040 (1128)
T COG5098 1037 KKDN 1040 (1128)
T ss_pred hccc
Confidence 5543
No 207
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.60 E-value=0.25 Score=41.93 Aligned_cols=137 Identities=20% Similarity=0.181 Sum_probs=94.4
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHH
Q 009622 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCL 332 (530)
Q Consensus 254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L 332 (530)
...++++..+.-++..+.+. ...-....+-+.+-..+...+..-...++.++..+..+.++....++ ..|+++.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 35677888888888777421 12122223334555556666666788889999999888887766666 77999999
Q ss_pred HHhhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc-Cchh-HHHHHHHHHHHh
Q 009622 333 LNLLS--GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFD-IKKEAAWAISNA 397 (530)
Q Consensus 333 ~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~-v~~~a~~aL~nl 397 (530)
..++. .. +..++..++.+|+.-|.. +.++..+...+++.|-++++. ++.. +|..|+-+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 92 LPLASRKSK-DRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHH-CTS--HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHhcccC-CHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 99998 55 778888888888766543 445555556788999999954 4555 888888888753
No 208
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.58 E-value=0.13 Score=45.35 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=79.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC--------CCHHHHHHHHHHHHHHh
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--------DYPQLQFEAAWALTNIA 145 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~--------~~~~i~~~a~~~L~~l~ 145 (530)
....+++.+.+..... ..+..|+..+...+..-++.+++.|++..|+++|..- .+..+..+++.||..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4466777787655443 5566666666553233467778888899999887631 23578999999999999
Q ss_pred cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009622 146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (530)
Q Consensus 146 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~ 187 (530)
. +......++. .+++..++..|.+++..++..++.+|+.+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8 5566666665 688999999999999999999999999886
No 209
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.57 E-value=0.02 Score=33.37 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.6
Q ss_pred chHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
++|.+++++.++ ++.||..|+++|+.++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 478999999999 99999999999999875
No 210
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.54 E-value=0.33 Score=47.53 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=83.5
Q ss_pred hHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC------CCCchhHHHHHHHHhHhhcCC
Q 009622 244 ALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 244 ~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~~~~~a~~~L~nl~~~~ 316 (530)
-.+.+-.-+...| ..-+..|+..+..++.........++. ..+..++. +.+|.-+..|+..++.++...
T Consensus 211 P~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~ 286 (370)
T PF08506_consen 211 PEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG 286 (370)
T ss_dssp HHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred HHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence 3444444444333 345667777777777553333222222 22333332 357888899999999998654
Q ss_pred ch------------hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622 317 DM------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 317 ~~------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
.. ....+....++|-|. --.+. .|-++..|++.+..+-..-+.. .+ .+++|.++..|.+++.
T Consensus 287 ~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~-~piLka~aik~~~~Fr~~l~~~--~l--~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 287 STTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNS-HPILKADAIKFLYTFRNQLPKE--QL--LQIFPLLVNHLQSSSY 360 (370)
T ss_dssp --BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S--HHHHHHHHHHHHHHGGGS-HH--HH--HHHHHHHHHHTTSS-H
T ss_pred ccccCCcccccccccHHHHHHHHhHHHhc-ccCCC-CcchHHHHHHHHHHHHhhCCHH--HH--HHHHHHHHHHhCCCCc
Confidence 32 123344555666665 11133 7889999999999997643321 22 2489999999999999
Q ss_pred hHHHHHHHHH
Q 009622 385 DIKKEAAWAI 394 (530)
Q Consensus 385 ~v~~~a~~aL 394 (530)
-|...|+.++
T Consensus 361 vv~tyAA~~i 370 (370)
T PF08506_consen 361 VVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHH
T ss_pred chhhhhhhhC
Confidence 9999998875
No 211
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.13 Score=51.10 Aligned_cols=151 Identities=22% Similarity=0.316 Sum_probs=99.9
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC
Q 009622 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201 (530)
Q Consensus 123 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~ 201 (530)
+++.+.+ +-+|...+..++---.++. ..|++..|+.. .++.+.++++.|+.+|+-+|.+.+.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3444444 5666665554443222222 23567777777 5668899999999999999877653
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHH
Q 009622 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281 (530)
Q Consensus 202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (530)
.+...+++|..+.+..++.....+|.-.|.+... ..++..|-.++.....-++..|+.+++-+.-...+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 5667778887788899999999999888877522 3345566677778888899999988887764332222211
Q ss_pred HHhCcHHHHHHhhCCC
Q 009622 282 IEAGVFPRLAEFLMHP 297 (530)
Q Consensus 282 ~~~~~i~~L~~lL~~~ 297 (530)
+. +++..+.+.+...
T Consensus 660 v~-~I~k~f~~vI~~K 674 (926)
T COG5116 660 VK-RIIKKFNRVIVDK 674 (926)
T ss_pred HH-HHHHHHHHHHhhh
Confidence 21 4556666666544
No 212
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=3.7 Score=46.46 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=94.8
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009622 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (530)
Q Consensus 285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (530)
+++|.|..-|.+.+..+|..|+..+|.+......+.. --...+...++.-+.+. +..||.++.....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7889998889999999999999999999875553321 00123555666666666 889999999999988776655433
Q ss_pred HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 365 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~ 443 (530)
.. ++...+.. .+.|++++.....++.-+... +..-.++.. .+..+.+-+.+....|+..|+..|..+.+.
T Consensus 337 ~~---~~~~~l~~--~~~D~~~rir~~v~i~~~~v~---~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AS---TILLALRE--RDLDEDVRVRTQVVIVACDVM---KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HH---HHHHHHHh--hcCChhhhheeeEEEEEeehh---HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 22 12222222 223444444433322222111 111222233 666777777888999999999999998874
No 213
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.34 E-value=0.33 Score=44.27 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 009622 89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168 (530)
Q Consensus 89 ~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL 168 (530)
....|+..|.-++--. ++....+-+...+..|+++|.....+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus 107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 3455777777776653 344445557888999999996554589999999999999999999999999999999999999
Q ss_pred CC--CCHHHHHHHHHHHHhhhCCC
Q 009622 169 YS--PSDDVREQAVWALGNIAGDS 190 (530)
Q Consensus 169 ~~--~~~~~~~~a~~~L~nl~~~~ 190 (530)
++ .+.+++-.++..|.-+..+.
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHccc
Confidence 87 56778888888877665443
No 214
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=4.7 Score=42.44 Aligned_cols=281 Identities=11% Similarity=0.094 Sum_probs=142.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhh
Q 009622 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 119 ~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
..+++++++.++.-++..+++++.-...+-.-..+.+.. ......+.+++.. ..-+.+...+.+|+.+.....+...
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 345666766644667777777777666633222222221 2233344445544 3445666777777776643322111
Q ss_pred hHhhcCChHHHHHhhcCCC-chhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh---hHHHHH--HH--HH
Q 009622 196 LVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD---EVLTDA--CW--AL 267 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~---~v~~~a--~~--~l 267 (530)
.. ...++..+-.+-..+. .+-++...+.++.++...-.........-++|.+-....-+.+ -..+++ +| +|
T Consensus 609 P~-~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L 687 (978)
T KOG1993|consen 609 PY-ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTL 687 (978)
T ss_pred HH-HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHH
Confidence 10 1112222222222333 4455566678888888765444444444445544433332221 233333 22 33
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHH
Q 009622 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (530)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 347 (530)
.|...-.++ +. +++|.+..++....+.+ ..++.++....--.....-.-...|+.+.+..++.+- ..+-...
T Consensus 688 ~n~~~l~p~----ll--~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~a 759 (978)
T KOG1993|consen 688 MNSQKLTPE----LL--LLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQA 759 (978)
T ss_pred hcccccCHH----HH--HHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence 443222222 22 56777777776554332 3334444332211111111122347778888887755 4444555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009622 348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLV 410 (530)
Q Consensus 348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 410 (530)
.+.++..+...++ ........++++.+..-+-.+ .|.+-..-+.+++.++.. +++....++
T Consensus 760 vLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~-n~~~~msvl 822 (978)
T KOG1993|consen 760 VLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR-NPSLFMSVL 822 (978)
T ss_pred HHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc-ChHHHHHHH
Confidence 5666666655544 455556678888887765333 577888888888888776 344443333
No 215
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.25 E-value=1.6 Score=43.71 Aligned_cols=260 Identities=14% Similarity=0.128 Sum_probs=145.7
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C
Q 009622 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-P 171 (530)
Q Consensus 93 a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~ 171 (530)
+-..|..++......+.+..++...+..|+.++.++| +.-|.....+|.++-......+..+.. .+...+.+++.. .
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence 4444555554432222333455567889999999999 899999999999887755666655543 345666667654 3
Q ss_pred CHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHH
Q 009622 172 SDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250 (530)
Q Consensus 172 ~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ 250 (530)
...-...++.+++.+..+-. ..+..-.. -....++.+.....-.........++..++..++.. ...++..+++
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk 262 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLK 262 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHH
Confidence 44455668888888876522 22222111 022334444433334455566667777776654322 2223333333
Q ss_pred hhcCCChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh---c
Q 009622 251 LIHSNDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE---Y 326 (530)
Q Consensus 251 ll~~~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~---~ 326 (530)
.=-..++.-..-.+.-+..+...- +.....+ ...++..+...+.+.+..+.+.|+..+.|= ... .++. .
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~-~li~~~~~ 335 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNNE-----YFL-SLISQNSR 335 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHH-HHHHCTHH
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHH-HHHHhChH
Confidence 333344443344444555555432 2333322 235778888889999999988888765432 122 2222 2
Q ss_pred CchHHHHHhhcCC---C-chhHHHHHHHHHHHHhcCCHHHHHHH
Q 009622 327 QALPCLLNLLSGN---Y-KKSIKKEACWTVSNITAGNREQIQAV 366 (530)
Q Consensus 327 ~~l~~L~~lL~~~---~-~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (530)
.++|.+..-+... + +..+|..|..++.-+..-++.....+
T Consensus 336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3677777776441 1 57899999999999988777655443
No 216
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.24 E-value=3.5 Score=40.70 Aligned_cols=267 Identities=13% Similarity=0.059 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHHhhhCCCchhhhhHhhc---CChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHH
Q 009622 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQ---GGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247 (530)
Q Consensus 172 ~~~~~~~a~~~L~nl~~~~~~~~~~i~~~---~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~ 247 (530)
+.++..+|+.+|+.+..+.. ....+-.. -++...+..+. .+.+..+....+|+|+.=-.............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 67899999999999876543 22221111 13344444442 344677888888887653332211112222223333
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc--CCc-hhhH--
Q 009622 248 LAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT--GDD-MQTQ-- 321 (530)
Q Consensus 248 L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~--~~~-~~~~-- 321 (530)
+..+-+ -+...+....+.++.++....+.....-. ...++.++..+-+....++..|..++..+.. +.. ....
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 333332 34567788888899888876654322111 1367888887777777777776655544432 111 1111
Q ss_pred -HHhh----cC-----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009622 322 -CVIE----YQ-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 322 -~~~~----~~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (530)
..++ .+ +.+.|..++.+. +.....--.|...-+..+++. .....+ ...+...-..+.++++.+|..|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence 1112 12 344466777663 222222234443333333221 101111 2244444556778899999999
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHcCChHHHHhccCCC-Ch----HHHHHHHHHHHHHHhh
Q 009622 391 AWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVCP-DP----RIVTVCLEGLENILKV 443 (530)
Q Consensus 391 ~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~-~~----~v~~~al~~l~~ll~~ 443 (530)
..+-..++... +.......+.. +..++...++.+ .. .+...++..+.+++-+
T Consensus 295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 98888777522 11111121111 233444444322 22 5667777777777643
No 217
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.10 E-value=1.9 Score=40.13 Aligned_cols=204 Identities=12% Similarity=0.106 Sum_probs=131.4
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc--CChHHHHHhhcCCC-chhHHHHHHHHhhhh
Q 009622 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQP-KLSMLRNATWTLSNF 229 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L 229 (530)
..+.++|.+..|++.+..-+.+.+..++.+..|+-...-..|....+. .-...+-.++.... .+++.-.+...+...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 356678999999999988888888888888888864333333222211 01222223332222 244544444444444
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc----HHHHHHhhCCCCchhHHHH
Q 009622 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPA 305 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----i~~L~~lL~~~~~~~~~~a 305 (530)
.+...-.........+......++.+.=++...|..++..+.......+..+..... .+.--.++.+++.-++..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 444333333334555556666666677788888888888877555444444444332 3445667888999999999
Q ss_pred HHHHhHhhcCCc---hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 306 LRTVGNIVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 306 ~~~L~nl~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+..+|.+.-+.+ ...+++-...-+..++.+|+.+ ...++-+|..+.--..+
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 999999976543 2344444557788999999998 88999999888777766
No 218
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.09 E-value=1.3 Score=43.50 Aligned_cols=275 Identities=18% Similarity=0.128 Sum_probs=139.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHhhhCCCchhhh
Q 009622 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQA-VWALGNIAGDSPRCRD 195 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a-~~~L~nl~~~~~~~~~ 195 (530)
+..+++=|.+.....+|..++--|+.-+. +++.+..+..+|.+..+++.+.. ++..+...+ +.++.-++.+.. .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 56667666654456889999988888888 79999999999999999999955 333244334 334444444443 334
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc---------CCChhHHHHHHHH
Q 009622 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---------SNDDEVLTDACWA 266 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~ 266 (530)
.+...+....+++++.-........... ....... ..........+...+. .....-+.-++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~l-sk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNL-SKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhhhhhh-hHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 4445555555567663000000000000 0000000 0000111111111110 0011112222223
Q ss_pred HHHhc--------------cCChHHHHHHHHhCcHHHHHHhhCC----C------------CchhHHHHHHHHhHhhcCC
Q 009622 267 LSYLS--------------DGTNDKIQAVIEAGVFPRLAEFLMH----P------------SPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 267 l~~l~--------------~~~~~~~~~~~~~~~i~~L~~lL~~----~------------~~~~~~~a~~~L~nl~~~~ 316 (530)
+-.++ ...+.....+...|++..++.++.. . +......++++|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 22221 1111122335556778888888751 1 1124566788888887766
Q ss_pred chhhHHHhh--cCchHHHHHhh-cCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-----------
Q 009622 317 DMQTQCVIE--YQALPCLLNLL-SGN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE----------- 380 (530)
Q Consensus 317 ~~~~~~~~~--~~~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----------- 380 (530)
.......+. .+.++.+...+ ... ....+...++.++.|++-+++..+..+...++...+..+..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 655545543 23333333332 221 03344567889999999888777766665443322221111
Q ss_pred ---cCchhHHHHHHHHHHHhhcCC
Q 009622 381 ---NAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 381 ---~~~~~v~~~a~~aL~nl~~~~ 401 (530)
....+...-++.++.|++...
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccccccchHHHHHHHhHHHheeeC
Confidence 112456666777777777653
No 219
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.97 E-value=11 Score=44.85 Aligned_cols=264 Identities=13% Similarity=0.070 Sum_probs=140.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCC--CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009622 84 SNDSGVQYECTTQFRKLLSIER--SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV 161 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i 161 (530)
+.+..+...|+..|++++...- .+....-.+..++..|..++.+..+.+++...+.|+.++...... -+.+| =
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcC-c
Confidence 3467788899999988765421 111111234456788888777665689999999999998873322 22334 3
Q ss_pred HHHHHhh----CCCCHHHHHHHHHHHHhhhCCCchh-----hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh---
Q 009622 162 PIFVKLL----YSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF--- 229 (530)
Q Consensus 162 ~~L~~lL----~~~~~~~~~~a~~~L~nl~~~~~~~-----~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L--- 229 (530)
+.+..++ ...++.+.+.|..++..|+.+.-.. ...+ ..++..+........+.++--.|+..|+++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 3344444 3467888888998888876542110 0111 113344444443333344444555445433
Q ss_pred -ccCC----------C-------------CC------C---hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---
Q 009622 230 -CRGK----------P-------------QP------P---FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--- 273 (530)
Q Consensus 230 -~~~~----------~-------------~~------~---~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--- 273 (530)
+... . .. . ....-.++..|..+...+..+|+..|+.+|..+...
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 1110 0 00 0 011223334445555667899999999988776532
Q ss_pred --ChHHHHHHHHhCcHHHHHHhhCCC-------------------C-----c--hhHHHHHHHHhHhhcCCchhhHHHhh
Q 009622 274 --TNDKIQAVIEAGVFPRLAEFLMHP-------------------S-----P--SVLIPALRTVGNIVTGDDMQTQCVIE 325 (530)
Q Consensus 274 --~~~~~~~~~~~~~i~~L~~lL~~~-------------------~-----~--~~~~~a~~~L~nl~~~~~~~~~~~~~ 325 (530)
+++.-..++. +++-.++..+++. + | .....|++.+..+....-..... +-
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L 1458 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-LL 1458 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 2222233333 4555555544321 0 1 12233444444443321111111 12
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.+++..|..++..+ +..+-+.++.+|.++..
T Consensus 1459 ~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1459 KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 35556666666666 77888888888888876
No 220
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.85 E-value=1.1 Score=48.29 Aligned_cols=186 Identities=16% Similarity=0.118 Sum_probs=129.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
+.+-..+.+.++..+.+|+..+...++... ........|.+-.++.....+.+-.+...|+.+|..|+..........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 334445668999999999999999987642 111111245555566555444447888999999999998654432222
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-
Q 009622 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP- 234 (530)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~- 234 (530)
. .++.+.|+..+......+++.+..++-.++...+. ....+.++..+ .+.++.+...+...+........
T Consensus 334 ~-~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 A-KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred H-HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 2 36789999999888888888887777766653321 12456667777 78888888876666665555442
Q ss_pred -CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009622 235 -QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (530)
Q Consensus 235 -~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (530)
.........++|.++....+.+.+|+..+..+++-+..
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 23345568889999999999999999999988877653
No 221
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.70 E-value=3.4 Score=37.78 Aligned_cols=202 Identities=21% Similarity=0.167 Sum_probs=118.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhH
Q 009622 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 197 (530)
++.|+.-+....++..+...+.+|..++.....+... ++..|..+...+....+..+...+..+....+..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 4455553444445999999999999999954233222 24566666776767676677777777765554211
Q ss_pred hhcCChHHHHHhh---------cCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHH
Q 009622 198 LSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWAL 267 (530)
Q Consensus 198 ~~~~~i~~Ll~ll---------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l 267 (530)
+.+..++..+ ..+...+.......++..+|...|. ....+++.+..++ +..++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3444444441 1122344555556788888888765 4566778888888 778888899999999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHHHHhhcCC
Q 009622 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGN 339 (530)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~ 339 (530)
..++...--.+. .....+.+-++.+ .+.+....+..++.+..+.- ..........++..+.++..+.
T Consensus 147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 999843221111 2234444444443 33444444444444333221 1112234556777777777766
No 222
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.63 E-value=2.9 Score=41.21 Aligned_cols=145 Identities=13% Similarity=0.169 Sum_probs=105.3
Q ss_pred HHHHHHHHhHhhc---CCchhhHHHhh-cCchHHHHHhhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 009622 302 LIPALRTVGNIVT---GDDMQTQCVIE-YQALPCLLNLLSGNY--KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375 (530)
Q Consensus 302 ~~~a~~~L~nl~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 375 (530)
.+..++++..+.. +.......+++ ..++..|..++.+.. .+.+-..|+.+++.+....|.....+.+.|+++.+
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence 3445556666655 33344455667 677888888888763 46788899999999998888888899999999999
Q ss_pred HHHHh-cC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh-------HHHHHHHHHHHHHHhhh
Q 009622 376 VALLE-NA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP-------RIVTVCLEGLENILKVG 444 (530)
Q Consensus 376 ~~ll~-~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~-------~v~~~al~~l~~ll~~~ 444 (530)
++.+. .+ +.++-...-.+|..++. +....+.+.+.+.++.+.+++.+++. ++....-.++..|+++.
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~ 234 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH 234 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence 99988 43 56777777778888888 55888898999999999998876432 23333444566666666
Q ss_pred hhhh
Q 009622 445 EAEK 448 (530)
Q Consensus 445 ~~~~ 448 (530)
+..+
T Consensus 235 p~Lk 238 (379)
T PF06025_consen 235 PSLK 238 (379)
T ss_pred HHHH
Confidence 6543
No 223
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.61 E-value=5.1 Score=39.62 Aligned_cols=193 Identities=11% Similarity=0.047 Sum_probs=113.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC----CH--HHHHHHHHHHHHHh
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED----YP--QLQFEAAWALTNIA 145 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~v~~Lv~ll~~~~----~~--~i~~~a~~~L~~l~ 145 (530)
+......+....+.+.++.|+-...++..+.+-.. .+.+.+.-+.+.+-+++.+.+ .| -.+.-++.+|+..|
T Consensus 12 a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC 91 (698)
T KOG2611|consen 12 ALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFC 91 (698)
T ss_pred chhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 33456667777788899999999999988754222 344677767888888887643 22 23455666777777
Q ss_pred cCChhh--HHHHHhCCChHHHHHhhCC-CC------HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCch
Q 009622 146 SGTSEH--TKVVIDHGAVPIFVKLLYS-PS------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL 216 (530)
Q Consensus 146 ~~~~~~--~~~~~~~g~i~~L~~lL~~-~~------~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~ 216 (530)
. .++. ...++ +.||.|+.+++. .+ ..+.+.+-.+|..+++..+. ...++..|.++.+.++-.-..-.
T Consensus 92 ~-~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~ 167 (698)
T KOG2611|consen 92 R-VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGS 167 (698)
T ss_pred C-ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCc
Confidence 7 3332 22233 458999998865 22 23778888899999988664 45667889999998776322111
Q ss_pred hHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 009622 217 SMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (530)
Q Consensus 217 ~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 270 (530)
.-..-++.++.-+...- -.........++..+..=+...+.......|..|..+
T Consensus 168 ~d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 168 HDMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred hhHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 11111222221111111 1111222222344444444445566667777777744
No 224
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.21 Score=46.11 Aligned_cols=144 Identities=11% Similarity=0.190 Sum_probs=98.7
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009622 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (530)
Q Consensus 287 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (530)
+...+..|.+.+|.....++..+..++...++.....+. .++-.+++-+++. ...|-+.||.+++.++..-...+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788999999999999999998877654433332 3555666667777 88899999999999987544444442
Q ss_pred HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622 367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 367 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll 441 (530)
.+ +.+-.|..--..++.-|+..|-.+|..++.+..+.. ++..|...+...++.++..+.-++.+..
T Consensus 168 ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 168 LD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 22 222222221222245689999999999999876542 5677777788888888777766555444
No 225
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.54 E-value=1.2 Score=46.20 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=95.7
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCC
Q 009622 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~ 316 (530)
......++|.|...+++.+..+++.++..+..+++.-+. ..++..++|+|..+ +.+.+..++..++-|++.++...
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 344577889888888899999999999999888765442 25566788888776 34567889999999999988322
Q ss_pred chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
+.. .+ ...+..+....... ++.+......+..++....... ..++...++|.++.+...+..
T Consensus 461 D~~--~v--~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 461 DKA--AV--LDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHH--Hh--HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence 211 11 12344555555566 8888888777777776633222 345566789999888776643
No 226
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.53 E-value=0.9 Score=39.86 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=95.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
-++.+++...+++..++..|+..+..++..+=..|.+ .+|.++.+..+++ +.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 4688888888999999999999999888764334443 5899999999988 99999999999999886555444
Q ss_pred HHHhCCChHHHHHh---hCCCCH-HH---HHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-------CchhHH
Q 009622 154 VVIDHGAVPIFVKL---LYSPSD-DV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-------PKLSML 219 (530)
Q Consensus 154 ~~~~~g~i~~L~~l---L~~~~~-~~---~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-------~~~~~~ 219 (530)
.-...| +..-..+ +..+.. .. ....+..+..+...+...|.. ++..+++.+... ....-.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHH
Confidence 433333 2222222 221111 11 455566666776655555555 455666666322 134445
Q ss_pred HHHHHHhhhhccCC
Q 009622 220 RNATWTLSNFCRGK 233 (530)
Q Consensus 220 ~~a~~~L~~L~~~~ 233 (530)
...+++..||+.-+
T Consensus 156 ~~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 156 DFLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHHhcCC
Confidence 56666666666553
No 227
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.35 E-value=4.2 Score=48.02 Aligned_cols=270 Identities=10% Similarity=0.066 Sum_probs=141.5
Q ss_pred CCHHHHHHHHHHHHhhhCCC---chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHH
Q 009622 171 PSDDVREQAVWALGNIAGDS---PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247 (530)
Q Consensus 171 ~~~~~~~~a~~~L~nl~~~~---~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~ 247 (530)
++..+...|+..|..++..- ++....-.+..++.++..++....+.++++.++.|+.++.......-..-...++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 45566667777666666321 111111223457788888887777889999999999988765422111222333444
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhccCChHHHH----HHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhc----CCc-
Q 009622 248 LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ----AVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVT----GDD- 317 (530)
Q Consensus 248 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~----~~~- 317 (530)
+.......++.+...+..++..+....-..+. ..+ ..++..+..+.... +..+-..|+..|.+++. +.-
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F-~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~ 1307 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF-TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLG 1307 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccc
Confidence 44344455677777777777665532111000 000 13344444444433 34455566666654421 000
Q ss_pred ----------------------hhhH-----HHhhcCchHHHH---HhhcCCCchhHHHHHHHHHHHHhcC-----CHHH
Q 009622 318 ----------------------MQTQ-----CVIEYQALPCLL---NLLSGNYKKSIKKEACWTVSNITAG-----NREQ 362 (530)
Q Consensus 318 ----------------------~~~~-----~~~~~~~l~~L~---~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~~ 362 (530)
.... .......+|.|. .+..+. +++||..|..+|-.+... +++.
T Consensus 1308 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~~~ 1386 (1780)
T PLN03076 1308 SSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSLPL 1386 (1780)
T ss_pred ccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 0000 000112334333 334555 899999999998887651 2333
Q ss_pred HHHHHHhCcHHHHHHHHhcC-----------------------chhHHHHHHHHHHHhhcCCCHHHHHHHH--HcCChHH
Q 009622 363 IQAVIEANIIGPLVALLENA-----------------------EFDIKKEAAWAISNATSGGTHEQIKFLV--IQGCIKP 417 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~~~-----------------------~~~v~~~a~~aL~nl~~~~~~~~~~~l~--~~~~l~~ 417 (530)
...+++ +++.++++.+... +..+...+..||.+++.--. .+...+- =.+++..
T Consensus 1387 W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft-~fFd~L~~~L~~~l~l 1464 (1780)
T PLN03076 1387 WERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV-KFYPTVNPLLKKVLML 1464 (1780)
T ss_pred HHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333333 5666666655321 01123333334444333110 2222221 2256667
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622 418 LCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 418 L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
|..++..++..+...+..+|.+++..+
T Consensus 1465 l~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1465 LVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 777778888899999999999987544
No 228
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.21 E-value=5.7 Score=38.45 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=110.4
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhc-CCchhhHHHhhc-C-chHHHHHhhcCC---Cc---------hhHHHHHHHH
Q 009622 287 FPRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQTQCVIEY-Q-ALPCLLNLLSGN---YK---------KSIKKEACWT 351 (530)
Q Consensus 287 i~~L~~lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~---~~---------~~v~~~a~~~ 351 (530)
+..+...|+.....+..++++.|..++. ........++.. + -.+.+.+++... .. +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788889999988899999999999998 444555556532 1 233444444321 01 2788887765
Q ss_pred HHHHh-cCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---CHHHHHHHHHcCChHHHHhccCCCC
Q 009622 352 VSNIT-AGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGG---THEQIKFLVIQGCIKPLCDLLVCPD 426 (530)
Q Consensus 352 L~nl~-~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~l~~L~~lL~~~~ 426 (530)
+..+. .+++.....++. .+.+..+.+-|..+++++....+.+|..-+... .....-.+....++..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 55544 477777766664 567888999898888999999999998644332 2333334456667888999888777
Q ss_pred h----HHHHHHHHHHHHHHhh
Q 009622 427 P----RIVTVCLEGLENILKV 443 (530)
Q Consensus 427 ~----~v~~~al~~l~~ll~~ 443 (530)
+ .+...+-+.|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 7888888888888753
No 229
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.18 E-value=4.9 Score=37.54 Aligned_cols=209 Identities=14% Similarity=0.109 Sum_probs=143.2
Q ss_pred HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc---hhhHHHh--hcCchHHHHHhhcCCCc-hhHHHHHHHH
Q 009622 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD---MQTQCVI--EYQALPCLLNLLSGNYK-KSIKKEACWT 351 (530)
Q Consensus 278 ~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~---~~~~~~~--~~~~l~~L~~lL~~~~~-~~v~~~a~~~ 351 (530)
.+.+.++|++..++..+...+...+..++.+..++....- ..+...+ ...++..|+.- ..+ +++--.+...
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~m 148 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNM 148 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHH
Confidence 3557788999999999999999999999999999865332 1111122 22344444433 212 3443333333
Q ss_pred HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--CC-hHHHHhccCCCChH
Q 009622 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--GC-IKPLCDLLVCPDPR 428 (530)
Q Consensus 352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~-l~~L~~lL~~~~~~ 428 (530)
+..+..+ +.....+....-+......++.+..++...|..++..+......-..+.+..+ .. .+....++.+++.-
T Consensus 149 lrEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv 227 (342)
T KOG1566|consen 149 LRECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYV 227 (342)
T ss_pred HHHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence 4333333 44455666777788888899999999999999999988876543344444432 11 44466788899999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 009622 429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 429 v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~ 498 (530)
+...++.++..++...++... -...+.+...+..+..|+..+...++-.|..+...|.....
T Consensus 228 tkrqs~kllg~llldr~N~~~--------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAV--------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHH--------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 999999999999876665443 25556666678888999999999999999998887655433
No 230
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.18 E-value=4.5 Score=40.43 Aligned_cols=233 Identities=13% Similarity=0.073 Sum_probs=130.0
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 155 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
.++...+..|+.++.++++.-|+....+|.++-+.....|..+.. .+...+.+.+...........++..++.+..+-.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 344456788999999999999999999999987666556655433 3556666777555666777778888888887753
Q ss_pred CC-ChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622 235 QP-PFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 235 ~~-~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
.+ ......-....++.+..... .........++......++.....+ +..++..=-..+..-...-+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 22 23333333445556655543 2223334444444444444333322 22233322223333333445555555
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc-----Cch
Q 009622 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLEN-----AEF 384 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~-----~~~ 384 (530)
....+...-.-+...+...+...+.+. +..|-+.|+....| +.+-.++. ..++|.++..+.. -+.
T Consensus 283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n------~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~ 355 (409)
T PF01603_consen 283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNN------EYFLSLISQNSRVILPIIFPALYRNSKNHWNQ 355 (409)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS------HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC------HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence 553332221222335677788888888 88888877765433 22222222 2256666666533 267
Q ss_pred hHHHHHHHHHHHhhcC
Q 009622 385 DIKKEAAWAISNATSG 400 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~ 400 (530)
.|+..|..++.-+...
T Consensus 356 ~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 356 TVRNLAQNVLKILMEM 371 (409)
T ss_dssp THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8999888888887775
No 231
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.14 E-value=3.9 Score=42.44 Aligned_cols=102 Identities=19% Similarity=0.327 Sum_probs=74.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+.-+++...+++..+++..+..|+.+... ...++..+-.++...+..-+.+.. |.+|.+|+.+|+.+-.+..+.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCCCC--
Confidence 455666677788999999999999988653 455666666677777777777766 899999999999988533211
Q ss_pred HHHhCCChHHHHHhhCC-CCHHHHHHHHHHH
Q 009622 154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWAL 183 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L 183 (530)
+..++..+..+++. +++++|..++..|
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 12456777888866 7899999866544
No 232
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.13 E-value=4.5 Score=36.94 Aligned_cols=202 Identities=18% Similarity=0.221 Sum_probs=113.5
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh
Q 009622 161 VPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD 239 (530)
Q Consensus 161 i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 239 (530)
++.|+. .-+..+++.....+.+|..++.+...+... ++..+..+. ..+.......+...+..+-... ...+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~-~r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAN-DRHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhC-chHH-
Confidence 344444 334578899999999999999776212222 344455555 4444444444555555554442 2222
Q ss_pred hhhchHHHHHHh--------hc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHH
Q 009622 240 QVSPALPALAHL--------IH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRT 308 (530)
Q Consensus 240 ~~~~~l~~L~~l--------l~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~~~~~a~~~ 308 (530)
+.+..++.. .. +...+.......++..++...++. ...+++.+..++ .+.++..+..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 233322222 01 112344455556777777666652 235678888888 78888899999999
Q ss_pred HhHhhcCCchhhHHHhh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhCcHHHHHHHHhcCch
Q 009622 309 VGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
+..++... +++ ......+.+-+..+..+.+.+..|..+..+..+.- ..-.......++..+.+...+.+.
T Consensus 146 l~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 146 LAPLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 99998322 121 13345555556555567777766666555554311 111222344567777776666553
No 233
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.10 E-value=7.7 Score=39.48 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=79.7
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009622 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 317 (530)
...+.+.+..++..+.++|..|+..++..|..++..-.+ +...+-.+++..|.+-+-+.++.+|..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 456678888888888999999999999999888755332 3445555888888888888899999999999988753222
Q ss_pred hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009622 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
..- ..+...|..+++++++.+||+.|..-+
T Consensus 165 nee-----n~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 111 123446777777766788988765443
No 234
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.02 E-value=6.3 Score=38.19 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=116.7
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHh-Cc-HHHHHHHHhcC-----c--------hhHHHHHHH
Q 009622 329 LPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEA-NI-IGPLVALLENA-----E--------FDIKKEAAW 392 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-i~~L~~ll~~~-----~--------~~v~~~a~~ 392 (530)
++.+...|... .+.+...+...|..++. ........+... ++ .+.+-+++... + +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 77888889888 78888899999999998 666666666642 11 33444444211 1 289999999
Q ss_pred HHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHH
Q 009622 393 AISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI 471 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 471 (530)
.+..+...+++.....+++ .+.+..+..-+..++++++..++.++..-+-..+..... .+..+-....+.+|
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~-------~K~~~fn~~~L~~l 209 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS-------TKCKLFNEWTLSQL 209 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh-------hhhhhcCHHHHHHH
Confidence 9999999888888888775 467888999998988899999999988644333333221 23333345578888
Q ss_pred HHHhcCCCH----HHHHHHHHHHHHhCC
Q 009622 472 ESLQTHDNA----EIYEKSVKLLETYWL 495 (530)
Q Consensus 472 ~~l~~~~~~----~v~~~a~~il~~~~~ 495 (530)
..|-...++ .+.+.+...+..+..
T Consensus 210 ~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 210 ASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 888888888 999999999998875
No 235
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.94 E-value=4.8 Score=41.95 Aligned_cols=174 Identities=15% Similarity=0.116 Sum_probs=106.8
Q ss_pred hhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009622 240 QVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 318 (530)
....++|.|...++..+ .++..-.+.-+..|...-+ ..-+...+++.|...+++.+..++..++..+...+..-+
T Consensus 346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD- 421 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID- 421 (700)
T ss_pred hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-
Confidence 34566777777776433 2222221111111111111 112334788888888999999999999999999887555
Q ss_pred hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
-..+..-++|.+..+........++..++-+++-+.. .++...-...+..+.+..+..++.+......+..++.
T Consensus 422 --~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 422 --VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred --HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 2345667888888886555477899999999888862 1111111124455556666778999888888888877
Q ss_pred cCCCHHHHHHHHHcCChHHHHhccCCC
Q 009622 399 SGGTHEQIKFLVIQGCIKPLCDLLVCP 425 (530)
Q Consensus 399 ~~~~~~~~~~l~~~~~l~~L~~lL~~~ 425 (530)
...... +.+....+++.+..+...+
T Consensus 496 ~~~~~g--~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 496 LIIYSG--VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred hhcccc--eeeehhhhhhhhhhhhhcc
Confidence 643211 2334456677666665544
No 236
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.37 E-value=0.57 Score=50.00 Aligned_cols=136 Identities=20% Similarity=0.238 Sum_probs=81.3
Q ss_pred chHHHHHHhhcC----CChhHHHHHHHHHHHhccC---Ch------HHHHHHHHhCcHHHHHHhhC----CCCchhHHHH
Q 009622 243 PALPALAHLIHS----NDDEVLTDACWALSYLSDG---TN------DKIQAVIEAGVFPRLAEFLM----HPSPSVLIPA 305 (530)
Q Consensus 243 ~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~---~~------~~~~~~~~~~~i~~L~~lL~----~~~~~~~~~a 305 (530)
..+..+..++.+ .++.+...++.+++.+... .. ......+...+++.+...+. ..+...+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 344445555543 3456777777777776522 10 00011122245566665554 4566778889
Q ss_pred HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-
Q 009622 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA- 382 (530)
Q Consensus 306 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~- 382 (530)
+++|||+.. + ..++.|..++... ....+|..|+|++..++...++. +.+.|+.++.+.
T Consensus 511 LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 511 LKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTT 571 (618)
T ss_dssp HHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TT
T ss_pred HHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCC
Confidence 999999974 1 3466777777654 26789999999999997766654 445677777654
Q ss_pred -chhHHHHHHHHHHHh
Q 009622 383 -EFDIKKEAAWAISNA 397 (530)
Q Consensus 383 -~~~v~~~a~~aL~nl 397 (530)
++++|..|..+|...
T Consensus 572 e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 572 EDPEVRIAAYLILMRC 587 (618)
T ss_dssp S-HHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHhc
Confidence 688999998777763
No 237
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.28 E-value=0.55 Score=33.64 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009622 90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159 (530)
Q Consensus 90 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g 159 (530)
...|++++.++.+. ..-...+.+.++++.++++....+...+|-.|.++|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 45789999999875 45566666789999999999876668999999999999998 677766665544
No 238
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=1.2 Score=41.43 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=103.7
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009622 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 321 (530)
...+...+..|.+.|.....+.+..+..++....+.....+. .++-.+++-+++....+-..||.+++.|.+.-.....
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888889999999999998776655554444 5667788888888888999999999999875544333
Q ss_pred HHhhcCchHHHHHhh-cCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622 322 CVIEYQALPCLLNLL-SGN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
.. +..++..| ... .+.-++..|-.+|..+..+-..+ .+++.|+..+.+..+.++..++.++.++.
T Consensus 166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 32 22333333 221 14568888889998887643222 36777888888889999999988888776
Q ss_pred cCC
Q 009622 399 SGG 401 (530)
Q Consensus 399 ~~~ 401 (530)
...
T Consensus 234 ~rl 236 (334)
T KOG2933|consen 234 IRL 236 (334)
T ss_pred eec
Confidence 543
No 239
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=2.7 Score=43.45 Aligned_cols=231 Identities=13% Similarity=0.069 Sum_probs=133.1
Q ss_pred hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC---CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--
Q 009622 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD-- 272 (530)
Q Consensus 198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~-- 272 (530)
++.|+++.++.....-+...+....=.+|+.+.... .........-.-|.|...|+..+..|+.+|+..+.++--
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 456677776665433333333333444455554432 111122223344667778888999999999999988752
Q ss_pred CCh---HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH----hhcCCCchhHH
Q 009622 273 GTN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN----LLSGNYKKSIK 345 (530)
Q Consensus 273 ~~~---~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~----lL~~~~~~~v~ 345 (530)
+++ +....+++ .-...+.++|.++-+.+|..|..-++.+.+.- ..++...++..++. -+..+...+||
T Consensus 206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~VR 280 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDVR 280 (1005)
T ss_pred CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence 222 22333444 34578999999999999999988888776422 23344333333333 33333256788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009622 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 425 (530)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 425 (530)
......|..++..... -.+++ -++|.|-..|.+....||-.+...|..+-..- ...+..---.+.++.-|..+
T Consensus 281 ~svf~gl~~~l~np~s--h~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr----a~~f~~I~~~d~~l~~L~~d 353 (1005)
T KOG1949|consen 281 CSVFKGLPMILDNPLS--HPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR----AAKFWKICPMDHILVRLETD 353 (1005)
T ss_pred hhHhcCcHHHHcCccc--hhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhhh----hhhhhccccHHHHHHHHhcc
Confidence 8888888877664221 12222 24567777778888899998888888774421 11112222344555556555
Q ss_pred ChHHHHHHHHHHHHH
Q 009622 426 DPRIVTVCLEGLENI 440 (530)
Q Consensus 426 ~~~v~~~al~~l~~l 440 (530)
+..+....+..|.+.
T Consensus 354 ~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 354 SRPVSRRLVSLIFNS 368 (1005)
T ss_pred ccHHHHHHHHHHHHh
Confidence 555554444444333
No 240
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.09 E-value=6.8 Score=36.40 Aligned_cols=218 Identities=16% Similarity=0.140 Sum_probs=121.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHh
Q 009622 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVL 198 (530)
Q Consensus 121 Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 198 (530)
|=..|.+++ +.+|..|+.+|+.+...-+... ....-+..|+.++.+ .+......++.++..|.....-....
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-- 77 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-- 77 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence 445677877 8999999999999887544221 112224555555433 45555555677777776332211111
Q ss_pred hcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChH
Q 009622 199 SQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 199 ~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~ 276 (530)
...++..+.+... +......+..+...+..+...............+..+++.+..+ ||.-+.-+...+..+...-+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~- 156 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD- 156 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence 1112333333221 12245566677777777766542222223355667777777654 77766666666655543322
Q ss_pred HHHHHHHhCcHHHHHHhhCC---------C-Cc--hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhH
Q 009622 277 KIQAVIEAGVFPRLAEFLMH---------P-SP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (530)
Q Consensus 277 ~~~~~~~~~~i~~L~~lL~~---------~-~~--~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 344 (530)
. ....+.+.+.+.. + ++ -.+..--..|.+....++... .-.+|.|++-|.++ .+.+
T Consensus 157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~ 224 (262)
T PF14500_consen 157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSV 224 (262)
T ss_pred -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHH
Confidence 0 1233334444321 1 21 133334444544444444332 34689999999998 8889
Q ss_pred HHHHHHHHHHHhc
Q 009622 345 KKEACWTVSNITA 357 (530)
Q Consensus 345 ~~~a~~~L~nl~~ 357 (530)
+..++.+|..++.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988876
No 241
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.97 E-value=1.3 Score=38.86 Aligned_cols=124 Identities=13% Similarity=0.093 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHH---------------HHhCcHHHHHHhhCC------CCchhHHHHHHHHhHhhc
Q 009622 256 DDEVLTDACWALSYLSDGTNDKIQAV---------------IEAGVFPRLAEFLMH------PSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 256 d~~v~~~a~~~l~~l~~~~~~~~~~~---------------~~~~~i~~L~~lL~~------~~~~~~~~a~~~L~nl~~ 314 (530)
+......++..|+|++.........+ .+...+..|+..+.. ....-......++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 33445566777788776544322111 112356677777655 234456677888999987
Q ss_pred CCchhhHHHhhc--Cc--hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHHHHHHhc
Q 009622 315 GDDMQTQCVIEY--QA--LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPLVALLEN 381 (530)
Q Consensus 315 ~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ll~~ 381 (530)
.+..++.+++. +. +..|+..+.+. +..-|.-++.+|.|+|.....+...+-. .+++|.|+--+..
T Consensus 88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred -CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence 45556666643 34 78888888888 7777788899999999876665333332 3566666665543
No 242
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=7.6 Score=40.12 Aligned_cols=290 Identities=13% Similarity=0.157 Sum_probs=150.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..+=+.+.++++.+.--|+-.+.-..++-.++ . .-++..|.+.+.+++ ..++..|+.-|+-.-.++ +++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 3444445556666666655554444222221111 1 113455677777777 677887777776655533 233
Q ss_pred HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622 154 VVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.+. ..|..++.+. ..++.-.+..+|+.+..++- -.. +...+++.++..-.........+...-.|.-+.-
T Consensus 487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGsc--n~d-vts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSC--NED-VTSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecC--ChH-HHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 332 1455556553 34577777777777764332 111 1122455555543222234444444444544444
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---chhHHHHHHH
Q 009622 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLIPALRT 308 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~~~~~a~~~ 308 (530)
+.. ..+...+..+..-...+...+-..+..++.....+.-.+-+ ..+..+..... ......|+.-
T Consensus 559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence 332 11222222222222223222222222222111111100000 22222222211 1223355555
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009622 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
++-++.+.+-..+. .+..+-.+|..+ ++.+|+..-.+++-++..+|.. +++..|-+...+.|.++..
T Consensus 627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 66666655543333 356777888888 9999999999999998877653 5788899999999999999
Q ss_pred HHHHHHHHhhcCCCHHH
Q 009622 389 EAAWAISNATSGGTHEQ 405 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~ 405 (530)
.++.+++-+-.+.+...
T Consensus 694 naIfamGLiGAGTnNAR 710 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTNNAR 710 (878)
T ss_pred HHHHHhccccCCcchHH
Confidence 99999998877654433
No 243
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.85 E-value=1.5 Score=44.34 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=72.7
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 009622 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQ 362 (530)
Q Consensus 285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~ 362 (530)
|++..++..+.+.+..+|..++.+|+.++..-.+ .+..+-.|++..|.+-+-+. .+.||.+|..+|+.+-. +++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence 7778888888899999999999999988764333 33455567788888877777 89999999999999865 34443
Q ss_pred HHHHHHhCcHHHHHHHHhcC-chhHHHHHHH
Q 009622 363 IQAVIEANIIGPLVALLENA-EFDIKKEAAW 392 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~ 392 (530)
. +...|..+++.+ +.+||+.|+.
T Consensus 169 ~-------~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 R-------IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred H-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence 2 344566666554 6778876653
No 244
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.83 E-value=0.44 Score=36.06 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=58.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
.+...+..+.++.+.+|-.|+..|++++... +... .--.+++..+...|++++ +-+-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~~~~--~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-SEPV--IDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-Ccch--hhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence 5678888899999999999999999999874 3111 112567888889999988 89999999999999985554
No 245
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.73 E-value=11 Score=37.37 Aligned_cols=192 Identities=19% Similarity=0.248 Sum_probs=117.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCc---hhhhhHhhcCChHHHHHhhc------CCCchhHHHHHHHHhhhhccCC
Q 009622 163 IFVKLLYSPSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGLVPLLAQLN------GQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~---~~~~~i~~~~~i~~Ll~ll~------~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
.+..++...+.+-+-.++.....++...+ ..++.+.+.-+.+.+-+++. ..++.-.+.-++..|..+|+.+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35566666667777778888888875443 23445666555555555653 1234455667788899999988
Q ss_pred CCCChhhhhchHHHHHHhhcCC-Chh------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchh-HHHH
Q 009622 234 PQPPFDQVSPALPALAHLIHSN-DDE------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV-LIPA 305 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~-d~~------v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~-~~~a 305 (530)
.......+-.-+|.|..++... |++ +..++..+|..++..... .+.++..|.++.+.++-.-.+... ..-+
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 6666666777889998888743 333 778888899888877554 456888899999988755443322 2223
Q ss_pred HHHHhHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009622 306 LRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (530)
Q Consensus 306 ~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (530)
+.++--...+.+.. ...+. .++..+..=+... +...+.+.|..|+.+...
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~-~~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVL-HNALKFELCHLLSAVLSS 226 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhC
Confidence 33332222222111 11111 1133333333444 567888999999976653
No 246
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.54 E-value=1.8 Score=43.36 Aligned_cols=158 Identities=13% Similarity=0.089 Sum_probs=111.2
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHhcCChh
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~---~~~i~~~a~~~L~~l~~~~~~ 150 (530)
....+.+.+.++++..+..|+..+..+... ...+..++....+..|..++.++. ..++...++.++..+-....-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 567889999999999999999998877433 456788888888999999998876 234555555555554442211
Q ss_pred hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622 151 HTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
... .+...+|.....+... .+..+-..|+..|-++...++..++.+.+.--+..++..+ +..+..++..|...+..
T Consensus 162 sW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 162 SWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 111 1122334444444422 4556778888899888888877888888888899999999 77788888888888877
Q ss_pred hccCCCC
Q 009622 229 FCRGKPQ 235 (530)
Q Consensus 229 L~~~~~~ 235 (530)
+....+.
T Consensus 240 l~~~a~~ 246 (713)
T KOG2999|consen 240 LFRKAPD 246 (713)
T ss_pred HHhhCCh
Confidence 7776543
No 247
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.51 E-value=1.8 Score=37.98 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=76.2
Q ss_pred hCCCCchhHHHHHHHHhHhhcCCchhhHHHh----------------hcCchHHHHHhhcCC-----CchhHHHHHHHHH
Q 009622 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSGN-----YKKSIKKEACWTV 352 (530)
Q Consensus 294 L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L 352 (530)
+.+.++.....++..|+|++.... ....++ ....+..|+.++..+ ....--...+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 344555677778888888887433 222222 123677777777661 1334556788899
Q ss_pred HHHhcCCHHHHHHHHH--hCc--HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009622 353 SNITAGNREQIQAVIE--ANI--IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 411 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~--~~~--i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 411 (530)
+|++.. ++.++.+++ .+. +..|+..+.+.+..-|.-++.+|.|++... +.-.+|..
T Consensus 83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~ 142 (192)
T PF04063_consen 83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLS 142 (192)
T ss_pred HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcC
Confidence 999765 677777774 334 778888888887777788899999999953 44455553
No 248
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.50 E-value=1.1 Score=38.29 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=80.0
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CC
Q 009622 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GN 359 (530)
Q Consensus 285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~ 359 (530)
.++.++..+|.+.++.-+..++..+..++..++.. .+.+ ...+..++.+|+....+.+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e--~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE--ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 56678899999999999999999999888765322 2322 24678888899887567889999999999875 45
Q ss_pred HHHHHHHHH---hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622 360 REQIQAVIE---ANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 360 ~~~~~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
++..+.+.. .++++.++.+++. ......++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 555555543 2345666666554 46677777777777653
No 249
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=5.5 Score=44.67 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=61.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC----------------CCChHHHHHHHHHH
Q 009622 374 PLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV----------------CPDPRIVTVCLEGL 437 (530)
Q Consensus 374 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~----------------~~~~~v~~~al~~l 437 (530)
.|.++..+.-++||..|+.++..+............++.-+...+..+|+ ...++.....+.++
T Consensus 1001 ~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgI 1080 (1610)
T KOG1848|consen 1001 HLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGI 1080 (1610)
T ss_pred HHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHH
Confidence 34444455556677777777666654322222222233333444444444 22234455566777
Q ss_pred HHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622 438 ENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 438 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
.+++.-..+.-. ..|.+....++. ++-+..+..+.++++.-.|..-+++.
T Consensus 1081 aklf~e~fk~ll----nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1081 AKLFSENFKLLL----NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHHHHHHHH----hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 777654333211 133344444332 56667777889999988888777764
No 250
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.37 E-value=0.46 Score=39.50 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=60.5
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009622 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~ 492 (530)
++..|..-+.+.++.++..++..|..+++.+... |...+...+.++.|..+... .++.|++++..+|+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~----------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR----------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH----------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 4666667777899999999999999999876442 56667777888888888766 899999999999999
Q ss_pred hCCCCC
Q 009622 493 YWLDDE 498 (530)
Q Consensus 493 ~~~~~~ 498 (530)
|.....
T Consensus 108 W~~~f~ 113 (144)
T cd03568 108 WADEFK 113 (144)
T ss_pred HHHHhC
Confidence 865444
No 251
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.19 E-value=3.8 Score=35.51 Aligned_cols=144 Identities=15% Similarity=0.215 Sum_probs=89.3
Q ss_pred hHHHHHHHHhHhhcCCchhh-----HHHhh------cCchHHHHHh-hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009622 301 VLIPALRTVGNIVTGDDMQT-----QCVIE------YQALPCLLNL-LSGNYKKSIKKEACWTVSNITAGNREQIQAVIE 368 (530)
Q Consensus 301 ~~~~a~~~L~nl~~~~~~~~-----~~~~~------~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (530)
+|..|+.+|..++...+... ..++. .+.-+.|+.. +.++ ++.+|..|+.++..+..+........-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 56777777777776522110 11111 1233344444 4555 9999999999999999886555433321
Q ss_pred h-------------------CcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChH
Q 009622 369 A-------------------NIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR 428 (530)
Q Consensus 369 ~-------------------~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 428 (530)
. .+...|+..+..+ +..+....+.++..++.....+..+.=+-..++..+..++.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1 1234455555555 6778889999999998876433322101112344555666789999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 009622 429 IVTVCLEGLENILKVGE 445 (530)
Q Consensus 429 v~~~al~~l~~ll~~~~ 445 (530)
++..++.++..++...+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999988876543
No 252
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.13 E-value=2.4 Score=36.80 Aligned_cols=141 Identities=18% Similarity=0.131 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhcC-Ch----hhHHHHHh------CCCh-HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh-
Q 009622 133 LQFEAAWALTNIASG-TS----EHTKVVID------HGAV-PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS- 199 (530)
Q Consensus 133 i~~~a~~~L~~l~~~-~~----~~~~~~~~------~g~i-~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~- 199 (530)
+|..|+.+|..++.. ++ .....++- .+.- +.+.-++.++++.+|..|+.++..+..+...+-...-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777764 11 11122221 1223 33444557789999999999999987654322111110
Q ss_pred ------------------cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC--hhhhhchHHHHHHhhcCCChhH
Q 009622 200 ------------------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP--FDQVSPALPALAHLIHSNDDEV 259 (530)
Q Consensus 200 ------------------~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v 259 (530)
...-..|+..+....+..+...++.++..|...-|... ......++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 11233455555566688888999999999998875433 3455666777778888999999
Q ss_pred HHHHHHHHHHhccC
Q 009622 260 LTDACWALSYLSDG 273 (530)
Q Consensus 260 ~~~a~~~l~~l~~~ 273 (530)
+..++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998887654
No 253
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.07 E-value=11 Score=38.10 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=111.0
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhcCCchhh
Q 009622 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVTGDDMQT 320 (530)
Q Consensus 245 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nl~~~~~~~~ 320 (530)
...+...+.+++..-+..++..+..++... .....++....+..|.+++.++.. .+...++++++.+....- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 344566666777666666777888776543 456778888889999999988643 456666666666654222 11
Q ss_pred HHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 321 QCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
...+...++.....+..-. .+..+-..|...|-++..+++...+.+.+.--+..|+..++..+..++..|...+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 1112222333333333211 145667788888888888887777777777789999999999999999998888888887
Q ss_pred CCCHHHHHHHHH
Q 009622 400 GGTHEQIKFLVI 411 (530)
Q Consensus 400 ~~~~~~~~~l~~ 411 (530)
.+.++.+..+.+
T Consensus 243 ~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 243 KAPDDKRFEMAK 254 (713)
T ss_pred hCChHHHHHHHH
Confidence 776665555443
No 254
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=91.92 E-value=16 Score=37.29 Aligned_cols=259 Identities=13% Similarity=0.078 Sum_probs=135.3
Q ss_pred HHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009622 79 VAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (530)
Q Consensus 79 ~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 157 (530)
-.++..+ ..+.+..++..+..++........ .. =..+.+.+.....++.-..-+.+|..++.+..+. . .++
T Consensus 34 ~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~--~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~ 105 (464)
T PF11864_consen 34 KDLIDPNQPSEARRAALELLIACIKRQDSSSG--LM----RAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-D-FFE 105 (464)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHccccccH--HH----HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcc
Confidence 3344444 356788888888887766422111 11 1123344443322332233334444444432222 2 245
Q ss_pred CCChHHHHHhhCCC---------------------------CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh
Q 009622 158 HGAVPIFVKLLYSP---------------------------SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL 210 (530)
Q Consensus 158 ~g~i~~L~~lL~~~---------------------------~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll 210 (530)
.++.+.|...+..- +.......+..+.|+...+...-+.-.-.+.+..++.+.
T Consensus 106 ~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC 185 (464)
T PF11864_consen 106 YEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTIC 185 (464)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 66777777766320 122333445555566544432222112223455555555
Q ss_pred cCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009622 211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (530)
Q Consensus 211 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 290 (530)
....+....+.++.++-.+.... ..+......++..|....... +....+-.++.||+...... ..+..|
T Consensus 186 ~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L 255 (464)
T PF11864_consen 186 KSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTL 255 (464)
T ss_pred hccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHH
Confidence 44555555566666666666553 122223334444444443222 45555666777777543321 235667
Q ss_pred HHhhCC------CCchhHHHHHHHHhHhhcCCchhhHHHhhc---CchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622 291 AEFLMH------PSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 291 ~~lL~~------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
..+|.+ .+..+..-|+..++.+..+..+....-+.. -+++.+...++.. ++.+-.+....+.++.
T Consensus 256 ~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 256 CDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 777732 244567788999998887763332222222 2788888888877 7777777777777776
No 255
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.91 E-value=14 Score=36.40 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-Hh--cCchhHHHHHHHHHHHhhcCCCH-----------HHHH
Q 009622 342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LE--NAEFDIKKEAAWAISNATSGGTH-----------EQIK 407 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~--~~~~~v~~~a~~aL~nl~~~~~~-----------~~~~ 407 (530)
..-|..|+..|..++.........++. +.+..++.- -. ..+++-+..|+..++.++..+.. -...
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 345677888888888654444333332 123332221 11 23678899999999999876521 1345
Q ss_pred HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009622 408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487 (530)
Q Consensus 408 ~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~ 487 (530)
.+....+++.|. --.+..|-++..|++.+..+-...++ +.+ .+.+..+.....+++.-|+..|.
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~-------------~~l--~~~~~~l~~~L~~~~~vv~tyAA 367 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK-------------EQL--LQIFPLLVNHLQSSSYVVHTYAA 367 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H-------------HHH--HHHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH-------------HHH--HHHHHHHHHHhCCCCcchhhhhh
Confidence 556666677666 22244555666777766655444332 111 34567888888999999998887
Q ss_pred HHH
Q 009622 488 KLL 490 (530)
Q Consensus 488 ~il 490 (530)
..|
T Consensus 368 ~~i 370 (370)
T PF08506_consen 368 IAI 370 (370)
T ss_dssp HHH
T ss_pred hhC
Confidence 543
No 256
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.86 E-value=13 Score=39.76 Aligned_cols=196 Identities=18% Similarity=0.134 Sum_probs=106.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhC----
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG---- 188 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~nl~~---- 188 (530)
.+..+.+++.... --..+|++.|..+......-... .+..+..++.+ .++.++..|+.+++.+..
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 3556667777644 11233455555554422122222 24556666654 456788888888888763
Q ss_pred CC-----chhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC---Ch
Q 009622 189 DS-----PRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DD 257 (530)
Q Consensus 189 ~~-----~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~---d~ 257 (530)
.. ............++.+...+. ...+..-+..++.+|.|+-. ...++.+..++... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 21 001111222335666666664 34466778888999999854 34678888887766 67
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh
Q 009622 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL 335 (530)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 335 (530)
.++..|++++..+....+..+. +.+++++.+. +.++|..|+.+|... ++.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence 8899999999988766654333 5566666553 466888877666432 2222 235566777
Q ss_pred hcCCCchhHHHH
Q 009622 336 LSGNYKKSIKKE 347 (530)
Q Consensus 336 L~~~~~~~v~~~ 347 (530)
+..+.+..|...
T Consensus 601 l~~E~~~QV~sf 612 (618)
T PF01347_consen 601 LWNEPSNQVASF 612 (618)
T ss_dssp HTT-S-HHHHHH
T ss_pred HhhCchHHHHHH
Confidence 766545555443
No 257
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.78 E-value=1.4 Score=38.63 Aligned_cols=109 Identities=10% Similarity=0.172 Sum_probs=73.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHH-HhcCChhhHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHhhh
Q 009622 118 VPRFVEFLLREDYPQLQFEAAWALTN-IASGTSEHTKVVIDHGAVPIFVKLLYS---------PSDDVREQAVWALGNIA 187 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~~~~~a~~~L~nl~ 187 (530)
...+++.+.+.. ... ..+..|.. +-.....+...+++.|++..|+.+|.. .+..+...++.+|..|.
T Consensus 68 p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 68 PEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 444566665544 111 22222222 223345678888888999999998843 34578888999999998
Q ss_pred CCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622 188 GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 188 ~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
.........+...+++..++..+ .+++..++..++..|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 77776666666678898999988 7888999999999998877
No 258
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.75 E-value=18 Score=38.23 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=79.9
Q ss_pred ChHHHHHhhcC---CCchhHHHHHHHHhhhhccCC----CCCChhhhhchHHHHHHhhc----CCChhHHHHHHHHHHHh
Q 009622 202 GLVPLLAQLNG---QPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYL 270 (530)
Q Consensus 202 ~i~~Ll~ll~~---~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l 270 (530)
.+..+..++.. .....+...++-+++.+.... +.........+++.+...+. ..+.+.+.-.+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 45566666632 224556666666666665422 21112233456666665553 34566667788888887
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhhC-C--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHH
Q 009622 271 SDGTNDKIQAVIEAGVFPRLAEFLM-H--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKK 346 (530)
Q Consensus 271 ~~~~~~~~~~~~~~~~i~~L~~lL~-~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~ 346 (530)
.... .+..+..++. . .+..+|..|+++|..++...+... -+.++.++.+. .++++|.
T Consensus 474 g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 474 GHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred CChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence 5432 2344444444 2 245689999999998876555433 44566666553 2678888
Q ss_pred HHHHHHHHH
Q 009622 347 EACWTVSNI 355 (530)
Q Consensus 347 ~a~~~L~nl 355 (530)
.|+.+|...
T Consensus 535 aA~~~lm~t 543 (574)
T smart00638 535 AAVLVLMET 543 (574)
T ss_pred HHHHHHHhc
Confidence 888777554
No 259
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.51 E-value=8.2 Score=35.81 Aligned_cols=213 Identities=18% Similarity=0.122 Sum_probs=118.5
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCC--CCc-HHHHH-----------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009622 79 VAGVWSNDSGVQYECTTQFRKLLSIER--SPP-IEEVI-----------RSGVVPRFVEFLLREDYPQLQFEAAWALTNI 144 (530)
Q Consensus 79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~-~~~~~-----------~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l 144 (530)
+.+|.+..+..-..|+..+.+++..-+ .+. .+.+. -.|+.+.+++=+.++. ....++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 345666666677777777777765421 111 11111 1244444445444443 344555566665
Q ss_pred hcCC-------hhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC
Q 009622 145 ASGT-------SEHTKVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ 213 (530)
Q Consensus 145 ~~~~-------~~~~~~~~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~ 213 (530)
+.-. .+.+-.+.=.+.+|.++..+.+++ ......++..|+.+|.... ...+..++....+.
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 5521 112222222345777777777765 2344566778888874322 12344444444322
Q ss_pred ---CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009622 214 ---PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (530)
Q Consensus 214 ---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 290 (530)
...+....++..|+.-.. | .....++-.|..++.++-+.++..++..|..+...-+-... ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 244555555555543322 1 12345667788889888899999999999888765443222 455788899
Q ss_pred HHhhCCCCchhHHHHHHHHhHhh
Q 009622 291 AEFLMHPSPSVLIPALRTVGNIV 313 (530)
Q Consensus 291 ~~lL~~~~~~~~~~a~~~L~nl~ 313 (530)
.+++.++.+ ..|+.++-++.
T Consensus 234 lrlL~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 234 LRLLQTDLW---MEALEVLDEIV 253 (262)
T ss_pred HHHhCCccH---HHHHHHHHHHH
Confidence 999987754 45555555444
No 260
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=91.39 E-value=2.4 Score=36.11 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=31.0
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009622 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (530)
.+++.|+.+|+.+.+..+|.++..++|.|.+-+|...+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 45778888898886789999999999999986665444
No 261
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=91.29 E-value=16 Score=36.78 Aligned_cols=261 Identities=11% Similarity=0.076 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCch-hhh--hHhhcCChHHH
Q 009622 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CRD--LVLSQGGLVPL 206 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~-~~~--~i~~~~~i~~L 206 (530)
+.+.....+++..+-.+-......+++. .+..+....++ .++..-.....+++.+...... ... .-++...++++
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f 122 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF 122 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 4455555555544444333333333321 23333333444 4565555555555555432111 111 12344467777
Q ss_pred HHhhcCCCchhHHHHHHHHhhhhccCCC-CCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009622 207 LAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA 284 (530)
Q Consensus 207 l~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 284 (530)
...| ...-.+..-++...++.|.+..+ .........++|.|+.-.- .....+ -...+.|..........+ ...
T Consensus 123 ~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~~ 197 (435)
T PF03378_consen 123 QEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VAN 197 (435)
T ss_dssp HHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG-------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cch
Confidence 7777 44445666777777777766554 2222233444444432211 111111 122223322222211111 111
Q ss_pred ----CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh-HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-C
Q 009622 285 ----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-G 358 (530)
Q Consensus 285 ----~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~ 358 (530)
+++..+-+++.+... -..+...|..+....+... +..+ ..++..++.-|++.......+.-+..++.++. .
T Consensus 198 ~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~ 274 (435)
T PF03378_consen 198 NQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY 274 (435)
T ss_dssp S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc
Confidence 233334445555432 2456677777766554321 1111 23555566666655456666666666666554 3
Q ss_pred CHHHHHHHHH---hCcHHHHHHH--H---hc-CchhHHHHHHHHHHHhhcC
Q 009622 359 NREQIQAVIE---ANIIGPLVAL--L---EN-AEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 359 ~~~~~~~l~~---~~~i~~L~~l--l---~~-~~~~v~~~a~~aL~nl~~~ 400 (530)
+++..-..++ .|+...++.- + .. ..+.-|+-++.+++++...
T Consensus 275 g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 275 GPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp -HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 4444433332 4555554442 1 11 1234466667777776654
No 262
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.28 E-value=1.1 Score=33.99 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=57.9
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009622 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 408 (530)
+...+..+.++ .+.+|..+...|..+..... ....--.+++..+...++++|+-|--.|+.+|..++.....+....
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 45566777777 88899999999999988544 1112224678888889999999999999999999998654333333
No 263
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.26 E-value=1.3 Score=38.96 Aligned_cols=141 Identities=13% Similarity=0.152 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHH
Q 009622 90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVPIF 164 (530)
Q Consensus 90 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L 164 (530)
...|+..|.-++|. .+....+++..+--.+..+|...+ ..-++..++.+++.+...+ ++....+....++|..
T Consensus 117 vcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 117 VCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 44566666666654 233333334443223344544322 3568889999999999854 5566667778999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-------CChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-------GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 165 ~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-------~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
++++...++.-+..++.++..+.+++......+... ..+..++..+-+.....+.+.++.+-..||..
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 999999888888999999999988876544332211 12222333332444566667777776666655
No 264
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.26 E-value=12 Score=34.67 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=131.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChhhh
Q 009622 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (530)
Q Consensus 163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 241 (530)
.|-..|.++++.+|..++.+|+.+...-+.. . +...-+..|+..... -.|......++.++..|..... ......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhhH
Confidence 4556778889999999999999988665521 1 222234445444421 1355555566777777774432 222223
Q ss_pred hchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCch
Q 009622 242 SPALPALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 242 ~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~ 318 (530)
..++..+.+-.. +.-...+..+...+..+........+ -...+++..+++.+..+ +|.....+...+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~- 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD- 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence 334444443222 22355677788888887766443332 22336777888887764 67777777777777765433
Q ss_pred hhHHHhhcCchHHHHHhhcC--------CC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622 319 QTQCVIEYQALPCLLNLLSG--------NY-KK--SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~--------~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
+ ....+.+...+.. +. ++ -.+..-...|.+....++... .-.+|.|++-|.++.+.++
T Consensus 157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHH
Confidence 1 2333444444421 11 22 233444455555555444322 2468999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 009622 388 KEAAWAISNATSG 400 (530)
Q Consensus 388 ~~a~~aL~nl~~~ 400 (530)
..++.+|..++..
T Consensus 226 ~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 226 LDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 265
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=90.97 E-value=17 Score=35.83 Aligned_cols=306 Identities=14% Similarity=0.137 Sum_probs=152.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCC-CcHHHHHHcCCHHHHHHhhc----C------CCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 84 SNDSGVQYECTTQFRKLLSIERS-PPIEEVIRSGVVPRFVEFLL----R------EDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~-~~~~~~~~~g~v~~Lv~ll~----~------~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.+.+.+..|-..|.+.+....+ +....+.+ -++.+++.+. + +.+..+..+|+++|+.+.. +++..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~ 80 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIV 80 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHH
Confidence 44555666666666666655332 22332221 1444444332 1 1136788999999999887 44444
Q ss_pred HHHHhC---CChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---C-CCchhHHHHHH
Q 009622 153 KVVIDH---GAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G-QPKLSMLRNAT 223 (530)
Q Consensus 153 ~~~~~~---g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~-~~~~~~~~~a~ 223 (530)
..+-+. -++...+..+.. .+..+....+|+|..=-. ...++....+..++..+. + -+...+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f-----~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF-----SPKIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-----CCcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 333221 134555566644 445677778888765321 122333444555555442 2 34667777788
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--CChHHH-H---HHHHh----C-----cHH
Q 009622 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--GTNDKI-Q---AVIEA----G-----VFP 288 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~--~~~~~~-~---~~~~~----~-----~i~ 288 (530)
.++.+|....|..-......=+|.++..+-+....++..|...+..+.. ...... . ...+. + +.+
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 8888888765433222233345666666666667776665554444321 111111 1 11111 2 334
Q ss_pred HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CCHHHHHH
Q 009622 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNREQIQA 365 (530)
Q Consensus 289 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~ 365 (530)
.+..++.+.+......-+|..--+.-++.....--.-...+......+.++ ++.+|..|..+=..+.. .+......
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~k 314 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSPK 314 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 466666663333333333332222222221111111234556666677787 88888877644333332 22222222
Q ss_pred HHHhCcHHHHHHHHhcC-ch----hHHHHHHHHHHHhhc
Q 009622 366 VIEANIIGPLVALLENA-EF----DIKKEAAWAISNATS 399 (530)
Q Consensus 366 l~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~nl~~ 399 (530)
.+.. +..++...+... .. .++..+...++++..
T Consensus 315 ~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 315 RLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 2222 223334344433 33 667777777777765
No 266
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.93 E-value=1.5 Score=36.14 Aligned_cols=74 Identities=9% Similarity=-0.054 Sum_probs=60.9
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHhhh
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~al~~l~~ll~~~ 444 (530)
.+..+.+-+.++++.++..|+..|-.++.++.......+.+.+++..|+.++.. .++.|+..++..+...-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456677788899999999999999999998888888888888999999999853 46789988888777665433
No 267
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.73 E-value=23 Score=37.13 Aligned_cols=185 Identities=15% Similarity=0.064 Sum_probs=113.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-h----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009622 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGT-S----EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~-~----~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 192 (530)
=|.|.+-|+-.+ ..+|..|+..+.++---. + +..+.+++.. ...|-.+|+++.+.+|..|+..++.+.+.--
T Consensus 176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW- 252 (1005)
T KOG1949|consen 176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFW- 252 (1005)
T ss_pred hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-
Confidence 345556666677 899999999998875422 2 3344444433 5678889999999999999888777653221
Q ss_pred hhhhHhhcCC----hHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 009622 193 CRDLVLSQGG----LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS 268 (530)
Q Consensus 193 ~~~~i~~~~~----i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 268 (530)
.++...+ +..+..-+..++..+++......|..+..++ ........++|.+-..|......|+..+...|.
T Consensus 253 ---e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 253 ---EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred ---HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 1111122 3333333334556688888888888887764 233344667777777888888888888877776
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009622 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (530)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~ 313 (530)
.+-...- ..+.+---.+.++..|..++..+....+..+-+.+
T Consensus 328 ~ik~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 328 KIKAVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHhhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6532221 11222222345555666666555555555554443
No 268
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.09 E-value=6.5 Score=41.50 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=82.8
Q ss_pred hchHHHHHHhhcCC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhhC----CCCchhHHHHHHHH
Q 009622 242 SPALPALAHLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTV 309 (530)
Q Consensus 242 ~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~lL~----~~~~~~~~~a~~~L 309 (530)
...+..+..++.++ ...+...++-+++.+.. ..+..-. .+-..+++.+...|. ..+...+..++.+|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 34556666666643 45566666767766652 1111001 111234555555443 34555677889999
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhc-CC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chh
Q 009622 310 GNIVTGDDMQTQCVIEYQALPCLLNLLS-GN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFD 385 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~ 385 (530)
||+.... .++.+..++. .. ....+|..|+|+|..++...+.. +-+.|+.++.+. +++
T Consensus 471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~E 531 (574)
T smart00638 471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPE 531 (574)
T ss_pred hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChH
Confidence 9987522 2445555554 21 15689999999999998655543 345666666554 688
Q ss_pred HHHHHHHHHHHh
Q 009622 386 IKKEAAWAISNA 397 (530)
Q Consensus 386 v~~~a~~aL~nl 397 (530)
+|..|+.+|...
T Consensus 532 vRiaA~~~lm~t 543 (574)
T smart00638 532 VRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHhc
Confidence 999988888765
No 269
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=31 Score=40.53 Aligned_cols=230 Identities=16% Similarity=0.073 Sum_probs=118.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
...++..+...+ |..+..+..+++.++..-++. .++ .+..+.++.-+.+ .++..|..-..+++.+-.+....-..
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 344455555566 777777777777777622211 111 1233455555544 55555555555666554322111111
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC---hhHHHHHHHH-------
Q 009622 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND---DEVLTDACWA------- 266 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~------- 266 (530)
-.....+..++.+..++..+.++..++.++..+..............-+..+..++.+.. .++....-++
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 111224556666665666789999999999998877644445555555555555554332 2222221111
Q ss_pred ------HHHhccCCh--HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC
Q 009622 267 ------LSYLSDGTN--DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338 (530)
Q Consensus 267 ------l~~l~~~~~--~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 338 (530)
++.=...+. +.... ...-.+-...-++.++++.++..++.++-++-...+..... .-+++.+..++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence 111111111 11111 11122333344456678888889999998887655543211 2345666666665
Q ss_pred CCchhHHHHHHHHHHHHh
Q 009622 339 NYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~ 356 (530)
. .--.|+.+.-++..+.
T Consensus 1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred h-hhhhhhhHHhhhhHHh
Confidence 5 3334444444444444
No 270
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=89.87 E-value=11 Score=34.56 Aligned_cols=130 Identities=14% Similarity=0.121 Sum_probs=70.5
Q ss_pred HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHH
Q 009622 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~ 361 (530)
+...++.++.+++.++.. .-..+|...+..-...-..+-.|-++.|..++.++. +.-+|..|+.+|..++...+.
T Consensus 71 e~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 346778899998766531 111222222111111111223455677777787764 567899999999999986666
Q ss_pred HHHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 009622 362 QIQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418 (530)
Q Consensus 362 ~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L 418 (530)
.+..+++ .+..++.. +...+..+-..-+..++.+-...-...++.+.+.|+++..
T Consensus 147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc
Confidence 6666654 44445544 3333333333333344444333233455666677777553
No 271
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.79 E-value=4.4 Score=34.69 Aligned_cols=115 Identities=12% Similarity=0.137 Sum_probs=78.3
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHHHHHHhcC-chhHHHHHHHHHHHhhc--CC
Q 009622 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPLVALLENA-EFDIKKEAAWAISNATS--GG 401 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~--~~ 401 (530)
.....+..+|.+. ++.-|..++..+.-.+..++. ..+.+ ...+..++.+++.+ .+.++..++.++..+.. .+
T Consensus 25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567788899888 888888888888877765422 12222 23678888888877 46788889999988875 22
Q ss_pred CHHHHHHHHHc---CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622 402 THEQIKFLVIQ---GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 402 ~~~~~~~l~~~---~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~ 446 (530)
.++..+.+... +++..++.+++. ......++.+|..++...+.
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 44544444432 335555555554 56777899999999987665
No 272
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.50 E-value=51 Score=38.92 Aligned_cols=273 Identities=14% Similarity=0.131 Sum_probs=141.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChh
Q 009622 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFD 239 (530)
Q Consensus 161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~ 239 (530)
+..+..-+..+++..+..+..+++.++...+.- . .-.+..+.+++-+....++-.+..-..++..+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 344555556678888888888888888543321 1 112245566666755666766766777788777765 333344
Q ss_pred hhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc---hhHH------------
Q 009622 240 QVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP---SVLI------------ 303 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~~~------------ 303 (530)
.....+..+..+...+ ++.|+..++.++..+.+.........+. -.+..+..+|-+..+ ++..
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 4556667777776655 5699999999999988654433332332 233344444433221 1111
Q ss_pred -HHHHHHhHhhcCCch-hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009622 304 -PALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 304 -~a~~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 381 (530)
....++|+=..++.. ..-..+..-.+-...-++.++ ++.++.++..++-++-...+.+... .-+++.|+.++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence 122223322222221 111112222233334445555 8888999999988876543332211 1245666666555
Q ss_pred CchhHHHHHHHHHHHhhcCCCHHHHH-----------------HHH-HcCChHHHHhccC-CCChHHHHHHHHHHHHHH
Q 009622 382 AEFDIKKEAAWAISNATSGGTHEQIK-----------------FLV-IQGCIKPLCDLLV-CPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 382 ~~~~v~~~a~~aL~nl~~~~~~~~~~-----------------~l~-~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll 441 (530)
.-.-.|.....++..+......+.++ ... +.|.=-.+..+++ ..|.+++..++..+.+++
T Consensus 1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 43333343333333333321111000 011 2233334444554 345667777777777644
No 273
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.22 E-value=7.5 Score=36.37 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHH
Q 009622 134 QFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVP 205 (530)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~----~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~ 205 (530)
+.=++-.+.-++. ++.....+...+ +...+..++. +..+..+-.++++++|+..+.. .+..+.... .+..
T Consensus 80 ~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 80 RFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILE 157 (268)
T ss_dssp -HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHH
T ss_pred chhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHH
Confidence 4444444444443 444444443322 2333333332 2567788899999999987765 455554432 2333
Q ss_pred HHHhhcCCC---chhHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhhc-C-CChhHHHHHHHHHHHhccCChHHH
Q 009622 206 LLAQLNGQP---KLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH-S-NDDEVLTDACWALSYLSDGTNDKI 278 (530)
Q Consensus 206 Ll~ll~~~~---~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll~-~-~d~~v~~~a~~~l~~l~~~~~~~~ 278 (530)
.+..+..+. +..++..++..+.|++... ..........++..+...+. . .|++....++.+++++...++...
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 333332332 7889999999999987654 11122233445666666333 2 589999999999999996665443
Q ss_pred H
Q 009622 279 Q 279 (530)
Q Consensus 279 ~ 279 (530)
.
T Consensus 238 ~ 238 (268)
T PF08324_consen 238 Q 238 (268)
T ss_dssp H
T ss_pred H
Confidence 3
No 274
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=89.00 E-value=8 Score=41.35 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=109.1
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..++..|.|.+..+...+-..+...+...+.+ + ++..|+++.-+..+ ..|+.+|..+-. +..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~-----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP---W-----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---H-----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence 6789999999999988888888888877654222 2 36667776544442 345556654432 3222
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
.++..|-..+. .+..|-.++..|+.+....|..-..+.+...+..|+++|..+.+..+...|+.+|..|.-.-
T Consensus 70 -----~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 22345555665 34678889999999998887777888999999999999988889999999999988887655
Q ss_pred CCCChhhhhchHHHHHHhh
Q 009622 234 PQPPFDQVSPALPALAHLI 252 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll 252 (530)
+.........++.....++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 4443344444444444444
No 275
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.85 E-value=1.4 Score=36.66 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=60.8
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
+++..+.+.|+++++.++..|+..|.-+..+.+......+.+.+++..|+.++....++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 47788888999999999999999999888775455556777888999999999754458899999988887765
No 276
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=88.67 E-value=41 Score=36.73 Aligned_cols=114 Identities=16% Similarity=0.171 Sum_probs=68.8
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhc
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL 450 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~ 450 (530)
+-..+...+..+++.+-...+.++.++..-......+ ...-++.-..-.+..-..+...+..+|.++....+
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~----- 513 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP----- 513 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----
Confidence 3445566666677778888888888877632111000 00011111111111111233344444555544432
Q ss_pred CCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009622 451 GNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD 497 (530)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 497 (530)
+....++.+.+....+-.+.-|+++++|+.|..++...|+.+
T Consensus 514 -----~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 514 -----SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred -----HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 336788888899999999999999999999999999999743
No 277
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.15 E-value=2.5 Score=35.21 Aligned_cols=72 Identities=8% Similarity=0.058 Sum_probs=61.3
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHHHHHHHHHHHHh
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILK 442 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~al~~l~~ll~ 442 (530)
.+..|.+-+.++++.++..|+..|-.++.++.......+.+..++..|..++.. .++.|...++..+.....
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 556777778889999999999999999999988888888899999999999987 678888888877766543
No 278
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.92 E-value=42 Score=35.98 Aligned_cols=153 Identities=13% Similarity=0.058 Sum_probs=75.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-CC--CCHHHHHHHHHHHHhhhCCCch
Q 009622 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL-YS--PSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~--~~~~~~~~a~~~L~nl~~~~~~ 192 (530)
+.+..+-+-|.-+|...-|..|+..+..++.........++. +.+..+++-. .+ .++.-++.++..+..++.....
T Consensus 361 ~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t 439 (960)
T KOG1992|consen 361 NPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQT 439 (960)
T ss_pred CHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHhhcch
Confidence 333344444443332233566667777777754443333332 2233333322 22 4566777788888777754322
Q ss_pred hhhhHhhc----CChHH----HHHhhcC---CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHH
Q 009622 193 CRDLVLSQ----GGLVP----LLAQLNG---QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLT 261 (530)
Q Consensus 193 ~~~~i~~~----~~i~~----Ll~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~ 261 (530)
.+.-+... +.+.. ++.-|.. ...+-++..++. .+..............++|.++.+|+++..-+-.
T Consensus 440 ~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIK---y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhs 516 (960)
T KOG1992|consen 440 AKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIK---YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHS 516 (960)
T ss_pred hhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccc---eeeeecccCChHHHHHHHHHHHHhccCcchHHHH
Confidence 11111111 11111 1112211 112222222222 1222222333445567899999999998888889
Q ss_pred HHHHHHHHhcc
Q 009622 262 DACWALSYLSD 272 (530)
Q Consensus 262 ~a~~~l~~l~~ 272 (530)
+|+.++-.+..
T Consensus 517 YAA~aiEkil~ 527 (960)
T KOG1992|consen 517 YAAIAIEKLLT 527 (960)
T ss_pred HHHHHHHhccc
Confidence 99988877653
No 279
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.75 E-value=2.2 Score=39.97 Aligned_cols=189 Identities=14% Similarity=0.091 Sum_probs=103.1
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC--chHHHHHhhcCC---CchhHHHHHHHHHHHHhcCCHHH
Q 009622 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN---YKKSIKKEACWTVSNITAGNREQ 362 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~--~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~ 362 (530)
..+...+.+-....+-+++..+.-++...+ ....+...+ +...+..++... ..+..+.-++++++|+..+.. .
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~ 143 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-G 143 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-C
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-c
Confidence 445555555555667888888766655333 222222221 234444444332 267788899999999987532 2
Q ss_pred HHHHHH-hC--cHHHHHHHHhcC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh-ccC-CCChHHHHHHH
Q 009622 363 IQAVIE-AN--IIGPLVALLENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD-LLV-CPDPRIVTVCL 434 (530)
Q Consensus 363 ~~~l~~-~~--~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~-lL~-~~~~~v~~~al 434 (530)
...+.. .+ ++..+..+..+. +..++..++..+.|++..........=....++..+.. +.. ..|++....++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 333332 22 233333333332 67899999999999975210000000001123555666 333 36899999999
Q ss_pred HHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHH
Q 009622 435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKL 489 (530)
Q Consensus 435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~i 489 (530)
-++++++..+.. ........|....+.... ....+.+++-+.+|
T Consensus 224 vAlGtL~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 224 VALGTLLSSSDS-----------AKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCCSHH-----------HHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHhccChh-----------HHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 999999955443 233344345555555553 55666676666553
No 280
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.57 E-value=2.2 Score=34.99 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=58.3
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCH-HHHHHHHHHHHHHhc
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYP-QLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~-~i~~~a~~~L~~l~~ 146 (530)
+++..+.+.|+++++.++..|+..|-.+..+.+.+....+...+++..|+.++...... .++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 47788888899999999999999999888876445556677788899999998876533 388888887777665
No 281
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.12 E-value=52 Score=35.19 Aligned_cols=314 Identities=14% Similarity=0.105 Sum_probs=166.7
Q ss_pred CHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHH--HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEV--IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~--~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
....++++++.. |.-++..+++.++-++...+ =.-+.+ .-..+...+..++..-..-+.+...+..|+.+.....+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n-F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN-FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhcc-CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 456677777765 67788888998887765431 111111 11333444555555432235566677777766653333
Q ss_pred hHHHHHhCCChHHHHHhh------CCCCHHHHHHHHHHHHhhhC---C-CchhhhhHhhcCChHHHHHhhcC---CCchh
Q 009622 151 HTKVVIDHGAVPIFVKLL------YSPSDDVREQAVWALGNIAG---D-SPRCRDLVLSQGGLVPLLAQLNG---QPKLS 217 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL------~~~~~~~~~~a~~~L~nl~~---~-~~~~~~~i~~~~~i~~Ll~ll~~---~~~~~ 217 (530)
..... ...+++++ .+..+-++.+.+.+|.|+.. . ++.+. .++-+++.+..+ .+..-
T Consensus 606 ~I~P~-----~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~ 674 (978)
T KOG1993|consen 606 HIAPY-----ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVY 674 (978)
T ss_pred hhhHH-----HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceee
Confidence 33211 12222222 22456678888888888762 1 22111 123344444321 12334
Q ss_pred HHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009622 218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (530)
Q Consensus 218 ~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 296 (530)
+.+.+.........+.+... ...-+++|.+...++...+.+.. ++..+ +++.-......+ ....|++..+..++.+
T Consensus 675 L~EDgmeLW~~~L~n~~~l~-p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 675 LLEDGMELWLTTLMNSQKLT-PELLLLFPHLLYIIEQSTENLPT-VLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDD 751 (978)
T ss_pred hhhhHHHHHHHHHhcccccC-HHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHH
Confidence 45555544444444432222 23456778888777655444332 22333 333333333222 3344788888888877
Q ss_pred CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHH
Q 009622 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEA-NIIGP 374 (530)
Q Consensus 297 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~ 374 (530)
-..+-....+.++..+...++ ........++++.+..-+-.+ ..|.+...-..+++.+.-.+++....+++. .-...
T Consensus 752 vr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~ 830 (978)
T KOG1993|consen 752 VRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDI 830 (978)
T ss_pred hhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHH
Confidence 666667777777777776554 333445567788777665332 256777777778888877777766555532 11112
Q ss_pred HH--------HHHhc-CchhHHHHHHHHHHHhhcCCCH
Q 009622 375 LV--------ALLEN-AEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 375 L~--------~ll~~-~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
++ .+..+ .+++-|+--+-|+..+...+.+
T Consensus 831 ~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~ 868 (978)
T KOG1993|consen 831 LIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNP 868 (978)
T ss_pred HHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCc
Confidence 22 12221 2456666666666666655443
No 282
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.06 E-value=4.5 Score=35.73 Aligned_cols=138 Identities=8% Similarity=0.121 Sum_probs=88.2
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHH
Q 009622 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----NYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLV 376 (530)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~ 376 (530)
...|+..+..+++ .++....++++.+--.+...|.. ....-+|-.+..+++.+.. +++..+..+....++|.++
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3456666666665 45555556666554444444432 2245688899999999987 6777888888899999999
Q ss_pred HHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--------CChHHHH-hccCCCChHHHHHHHHHHHHHHh
Q 009622 377 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 377 ~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~l~~L~-~lL~~~~~~v~~~al~~l~~ll~ 442 (530)
++++.++.--+.-|+..+..+.... ....++++. .++..++ .+.+.....+...++.+..++..
T Consensus 196 rIme~gSElSktvaifI~qkil~dD--vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDD--VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 9999998777888888888777643 333333221 1222222 23344566677777666655543
No 283
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.02 E-value=11 Score=36.65 Aligned_cols=216 Identities=19% Similarity=0.120 Sum_probs=107.9
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009622 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (530)
Q Consensus 115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 193 (530)
..++..|..++..+.++......+.+++.-+..- .+. ...++..+.+-+.+..+.+|..-+..++.+....+..
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 4456677777776554666666666665544311 111 1234567777777776779998888888887511100
Q ss_pred hhhHhhcCChHHHHHhhc---CCCchhHH---HHHHHHhhhhccCC-CCCCh--hh----hhchHHH-H--HHhhcC-CC
Q 009622 194 RDLVLSQGGLVPLLAQLN---GQPKLSML---RNATWTLSNFCRGK-PQPPF--DQ----VSPALPA-L--AHLIHS-ND 256 (530)
Q Consensus 194 ~~~i~~~~~i~~Ll~ll~---~~~~~~~~---~~a~~~L~~L~~~~-~~~~~--~~----~~~~l~~-L--~~ll~~-~d 256 (530)
...-.-..+++.|++.+. .++-+... -.++.++..++... +.... .. ..+-=|. + -++... .+
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~ 175 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS 175 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC
Confidence 011112236677777663 12211111 01111111111111 00000 00 0000000 0 022222 34
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (530)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (530)
++-....+.++..+..........-....+-..++.++-+. .+.+|..|+.++..+...++.. +...++..+..
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~ 251 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWK 251 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHH
Confidence 44455566666665544332211111223456678888777 8999999999999998877753 33445666666
Q ss_pred hhcCC
Q 009622 335 LLSGN 339 (530)
Q Consensus 335 lL~~~ 339 (530)
++...
T Consensus 252 ~l~~~ 256 (339)
T PF12074_consen 252 WLSSS 256 (339)
T ss_pred HHHhc
Confidence 66543
No 284
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.92 E-value=9.9 Score=31.13 Aligned_cols=75 Identities=8% Similarity=-0.062 Sum_probs=61.3
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC---CChHHHHHHHHHHHHHHhhhh
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~---~~~~v~~~al~~l~~ll~~~~ 445 (530)
.+..|.+-+.++++.++..|+..|-.++.++.......+.+...+..|..++.. .++.|+..++..+...-....
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 566777888899999999999999999999887777777777888889998875 477899988888877765443
No 285
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=85.84 E-value=28 Score=35.16 Aligned_cols=262 Identities=10% Similarity=0.062 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC----CCCChhhhhchHH
Q 009622 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALP 246 (530)
Q Consensus 171 ~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~~l~ 246 (530)
+++-+.....+++..+-.+.......++.. .+..+....++..++..-.+...+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 455566666666665544433333333221 23333333334457777777766666665543 2222345677889
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCCch---hHHHHHHHHhHhhcCCchhhHH
Q 009622 247 ALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPS---VLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~---~~~~a~~~L~nl~~~~~~~~~~ 322 (530)
.+...|..+-.+..-++...++.+.+... .... .-....+-.++...-|. -.-...+.|.++....+...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i-- 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI-- 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh--
Confidence 99999988878888888888888775443 1111 11222222223222222 22344556666554333322
Q ss_pred Hhhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHH
Q 009622 323 VIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISN 396 (530)
Q Consensus 323 ~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~n 396 (530)
... +++..+-+++.+. .. -.++...|..+...-+. .....+. .++..++.-|++. ..+..+.-+..++.
T Consensus 195 -~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~ 269 (435)
T PF03378_consen 195 -VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSL 269 (435)
T ss_dssp ----S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred -cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 222 3445555666655 22 24566677766653332 3333332 3555555555544 56666666666666
Q ss_pred hhcCCCHHHHHHHHH---cCChHHHHhcc------CCCChHHHHHHHHHHHHHHhhh
Q 009622 397 ATSGGTHEQIKFLVI---QGCIKPLCDLL------VCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 397 l~~~~~~~~~~~l~~---~~~l~~L~~lL------~~~~~~v~~~al~~l~~ll~~~ 444 (530)
++...+++..-..++ .|+...+..-+ +-..+.-+..+.-++.+++...
T Consensus 270 ~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 270 FAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 655434444444443 24333332211 1122333444555666666443
No 286
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.71 E-value=4 Score=33.88 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=61.4
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhh
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~ 444 (530)
.+..|.+-+.++++.++..|+..|-.++.++.......+.+.+++..|..++. ..++.|+..++..+.......
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 56677778888999999999999999999887777788888899999999887 567788888888877665443
No 287
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.42 E-value=3.9 Score=33.52 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=58.5
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhc
Q 009622 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~--~~~~i~~~a~~~L~~l~~ 146 (530)
+++..+.+.|+++++.++..|+..|..+..+.+.+....+.....+..|+.++... .++.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 47788888899999999999999999888776444445555557788899999763 347899999988888776
No 288
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.98 E-value=15 Score=29.42 Aligned_cols=74 Identities=12% Similarity=0.257 Sum_probs=52.8
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHh-hhhccHHHHHHHhc--------CCCHHHHH
Q 009622 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI-DDAEGLEKIESLQT--------HDNAEIYE 484 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~--------~~~~~v~~ 484 (530)
+++.|..-|+..++.|...+|.+|..++..++.. |...+ .....+..+.+... ..+..|..
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~----------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~ 108 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD----------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVRE 108 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH----------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHH
Confidence 5677888888888999899999999999887542 23332 33334455555443 34567999
Q ss_pred HHHHHHHHhCCCC
Q 009622 485 KSVKLLETYWLDD 497 (530)
Q Consensus 485 ~a~~il~~~~~~~ 497 (530)
.|.+++.-.|+++
T Consensus 109 ~A~El~~~if~~~ 121 (122)
T cd03572 109 EAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998864
No 289
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=84.95 E-value=9 Score=46.41 Aligned_cols=263 Identities=15% Similarity=0.173 Sum_probs=134.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCC-----CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009622 84 SNDSGVQYECTTQFRKLLSIERS-----PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~-----~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 158 (530)
..+++.+..+...+..++..... +..-.. ...++..+..+-....++.++......+. ........+.
T Consensus 492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~-v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~ 564 (2341)
T KOG0891|consen 492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQV-VKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQP 564 (2341)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHH-HHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcCc
Confidence 46677777776666655543211 000000 11223333333222223555554444332 2222233444
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhc-cCCC
Q 009622 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFC-RGKP 234 (530)
Q Consensus 159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~-~~~~ 234 (530)
+.+..+...+....-.+++.+...+++++..+|.+.-.-+.. ..+..+. .+.-. ....-+......+ ...+
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~----~~l~~~s~l~~sg~~-r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK----TLLELLTELEFSGMA-RTKEESAKLLCELIISSP 639 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH----HHHHHhchhhhcchH-HhHHHHHHHhhHHHHHHH
Confidence 555666667777778899999999999998766322111111 1111111 11100 1111111111110 0001
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhHhh
Q 009622 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIV 313 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nl~ 313 (530)
..........+..++..+...+..+...+..+++.|+..........++ ..++.+.+.+.. ++..-+..++++++++.
T Consensus 640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 1111223444566666777777788888888888888655433333444 455555555543 45556788999999998
Q ss_pred cCCchhhHHHh-hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009622 314 TGDDMQTQCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 314 ~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
........... -..++..+...+.......+|.++...++++...+
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 65443221111 12355666666666656678888888888776543
No 290
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=84.78 E-value=67 Score=35.28 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=57.6
Q ss_pred chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009622 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407 (530)
Q Consensus 328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 407 (530)
.+|.|++-|.......+|.+...+++.+|...- .+-...+|.+-..|.++++-||+.+...|.++...+-. +
T Consensus 969 ~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~v---K 1040 (1529)
T KOG0413|consen 969 LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIV---K 1040 (1529)
T ss_pred HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhh---h
Confidence 345555555444344455555555555543211 12234678888888888888999999999998875321 1
Q ss_pred HHHHcCC--hHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622 408 FLVIQGC--IKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 408 ~l~~~~~--l~~L~~lL~~~~~~v~~~al~~l~~ll~~ 443 (530)
+ .|. +..+..++ +.+++++..+--++..++..
T Consensus 1041 w---~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1041 W---NGELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred c---chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 1 121 33333333 34556666665555555543
No 291
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=84.35 E-value=33 Score=31.46 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCChHHHHHhhCCCCHHH--------HHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC-chhHHHHHHHHhhh
Q 009622 158 HGAVPIFVKLLYSPSDDV--------REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSN 228 (530)
Q Consensus 158 ~g~i~~L~~lL~~~~~~~--------~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~ 228 (530)
..+++.++++++.++..+ .+....+|..+ -.|-+..|.+++.+.. +.-++.+++.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 456889999997654321 11122222222 3456777777775433 67788889999999
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChh
Q 009622 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDE 258 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~ 258 (530)
+....+........-.-..+...+...+..
T Consensus 140 l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 140 LVHEGPISREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence 998876555444444444444445444444
No 292
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.22 E-value=5 Score=36.03 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=60.8
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHhh-------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HhCc
Q 009622 300 SVLIPALRTVGNIVTGDDMQTQCVIE-------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EANI 371 (530)
Q Consensus 300 ~~~~~a~~~L~nl~~~~~~~~~~~~~-------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~ 371 (530)
+-+..|+.+|+.++.... ..+.++. ..++..|..++....++..|+-|...|.+++.++......+. +.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 457889999999986322 2223332 245666777777666889999999999999998776665443 6788
Q ss_pred HHHHHHHHhcCch
Q 009622 372 IGPLVALLENAEF 384 (530)
Q Consensus 372 i~~L~~ll~~~~~ 384 (530)
|..|+..++..+.
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 293
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=84.08 E-value=6.8 Score=32.34 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=57.7
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009622 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 487 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~a~ 487 (530)
++..|..-|.++++.++..+|.+|..+++.+.. .|...+...++++.+..+.. ..++.|+++..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~----------~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil 108 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE----------RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKII 108 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 566677778899999999999999999886533 25666777777877888764 36789999999
Q ss_pred HHHHHhCCC
Q 009622 488 KLLETYWLD 496 (530)
Q Consensus 488 ~il~~~~~~ 496 (530)
.+++.|-..
T Consensus 109 ~li~~W~~~ 117 (139)
T cd03567 109 ELLYSWTLE 117 (139)
T ss_pred HHHHHHHHH
Confidence 999998653
No 294
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.89 E-value=14 Score=34.85 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=74.9
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHhCcHHHHHH----HHh--------cCchhHHHHHHHH
Q 009622 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QAVIEANIIGPLVA----LLE--------NAEFDIKKEAAWA 393 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~i~~L~~----ll~--------~~~~~v~~~a~~a 393 (530)
-++|.++.++++. ++.+|..++.+|..+....+... ..+.+.|+.+.+.+ .+. .....+-..|.-+
T Consensus 119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 3689999999998 99999999999999988543332 33556666554444 333 3356677888888
Q ss_pred HHHhhcC-------CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622 394 ISNATSG-------GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 394 L~nl~~~-------~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~ 443 (530)
|..++.. ........++..|++..+...-+...+.++...++.+..++..
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 8877431 1223344445555555544444444577877777776666644
No 295
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=83.81 E-value=11 Score=35.20 Aligned_cols=74 Identities=9% Similarity=0.146 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhhcCC-----CCchhhHHHhhhhccHHHHHHHhcCCCH-HHHHHHHHHHHHhCCCCCC
Q 009622 426 DPRIVTVCLEGLENILKVGEAEKNLGN-----TDVNVFTQMIDDAEGLEKIESLQTHDNA-EIYEKSVKLLETYWLDDED 499 (530)
Q Consensus 426 ~~~v~~~al~~l~~ll~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~v~~~a~~il~~~~~~~~~ 499 (530)
|..+++.++..+.|++...+....... ...+.+...|.+.|+++.|..+..+.++ +-.....+|+--.|-+.+.
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence 556999999999999987433211110 1345678888999999999999877633 3334556666666655543
No 296
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=83.61 E-value=13 Score=28.52 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009622 88 GVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (530)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 166 (530)
+++..|+..+..-+... --....+. ..+++..|+++++.+. +..+..++..+..++. ++.....+.+.|++..|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 45556665554333221 22223333 4567888999999887 5688899999999888 6777788888898888766
Q ss_pred hhCCCCHHHHHHHHHHH
Q 009622 167 LLYSPSDDVREQAVWAL 183 (530)
Q Consensus 167 lL~~~~~~~~~~a~~~L 183 (530)
+=...++..+..+-.++
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 66555666655444333
No 297
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.51 E-value=3.3 Score=37.12 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHH-------cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCC
Q 009622 88 GVQYECTTQFRKLLSIERSPPIEEVIR-------SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI-DHG 159 (530)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~-------~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~g 159 (530)
.-|..|+.+|.|+.-.+ .+++.++. ..++..|++++....++..++-|+-.|.+++.++......+. +.+
T Consensus 139 SPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 45788999999986543 23322222 235667788887766689999999999999998876665544 578
Q ss_pred ChHHHHHhhCCC
Q 009622 160 AVPIFVKLLYSP 171 (530)
Q Consensus 160 ~i~~L~~lL~~~ 171 (530)
.|..|+.++...
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999999653
No 298
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=83.25 E-value=22 Score=28.52 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=58.6
Q ss_pred HHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhccCCCC---
Q 009622 351 TVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPD--- 426 (530)
Q Consensus 351 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~~--- 426 (530)
-|++++..++..... ++..|.+-|++.++.|+..++.+|.+++..|.+++...+... ..|..+..+-...|
T Consensus 24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 344444444444433 456788888888999999999999999999988877776644 34555555444233
Q ss_pred -----hHHHHHHHHHHHHHHh
Q 009622 427 -----PRIVTVCLEGLENILK 442 (530)
Q Consensus 427 -----~~v~~~al~~l~~ll~ 442 (530)
..|+..|-+++..|+.
T Consensus 99 Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhc
Confidence 2477777776666553
No 299
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=83.14 E-value=49 Score=32.43 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=85.6
Q ss_pred HHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc---CCC------CHHHHHHHHHHHHHH
Q 009622 75 LPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---RED------YPQLQFEAAWALTNI 144 (530)
Q Consensus 75 l~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~---~~~------~~~i~~~a~~~L~~l 144 (530)
...+.+.|..+. +..+...+..++ +++.+ ....+-+.....+..|..+-. .++ +..+..+|+.||+|+
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~Letvr-ILSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVR-ILSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHH-HHhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence 345555555554 445555666666 44443 222222222222344444322 111 247889999999999
Q ss_pred hcCChhhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHhhhCCCchhhhh-HhhcCChHHHHHhhcC-----C
Q 009622 145 ASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDL-VLSQGGLVPLLAQLNG-----Q 213 (530)
Q Consensus 145 ~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~-i~~~~~i~~Ll~ll~~-----~ 213 (530)
...++..++.......+..+++.+.. ....+...-++.|.-+..-.+..|.. +...++++.+.+.+.. +
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgids 204 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDS 204 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCC
Confidence 99999999998888777777776632 11122233333333333333334443 4566777777777731 1
Q ss_pred ---------CchhHHHHHHHHhhhhccCC
Q 009622 214 ---------PKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 214 ---------~~~~~~~~a~~~L~~L~~~~ 233 (530)
.+.+....++.++.|++...
T Consensus 205 e~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 205 EINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 12233445566667776665
No 300
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.00 E-value=84 Score=36.24 Aligned_cols=150 Identities=9% Similarity=0.118 Sum_probs=91.0
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 319 (530)
...+++|.|..-|.+++..++..|...++.+......... -.........+.-+.+....+|..++....++...++..
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence 3467788888888899999999999999998866554322 011244556666677788889999999888887666544
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.... +....+.. .+. ++.+|.....++.-+.. ....-.++.. ++..+-+.+.+..+.||..|...|..+..
T Consensus 335 ~~~~---~~~~~l~~--~~~-D~~~rir~~v~i~~~~v--~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 335 AKAS---TILLALRE--RDL-DEDVRVRTQVVIVACDV--MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhHH---HHHHHHHh--hcC-ChhhhheeeEEEEEeeh--hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3221 11222222 222 44444433222221111 0111112222 55566666777789999999988887765
No 301
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.58 E-value=12 Score=28.60 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=55.4
Q ss_pred cCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009622 412 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491 (530)
Q Consensus 412 ~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~ 491 (530)
...+..|+.-...+++.....++..+..+++.... ...+.+.|+.+-+.++...-+++.+.....|++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 35677777777777777788888889888876543 667888999999999999999999999888886
Q ss_pred H
Q 009622 492 T 492 (530)
Q Consensus 492 ~ 492 (530)
.
T Consensus 97 ~ 97 (98)
T PF14726_consen 97 Q 97 (98)
T ss_pred c
Confidence 4
No 302
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=82.57 E-value=82 Score=34.64 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHh
Q 009622 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL 251 (530)
Q Consensus 172 ~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l 251 (530)
.+.++.++.-+|+++|--.....+ ..+|.|++-|..+....++.+.+-+++-+|... ..+....+|.+...
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence 346788888999999855443322 268889999977888888888888888887653 23456788999999
Q ss_pred hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009622 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (530)
Q Consensus 252 l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~ 313 (530)
|..+++-|+..++..|.+|....--. ....++-+++..+-+.++.++..|=.+++.+.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999987543211 11122333444444566677777766666664
No 303
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.64 E-value=35 Score=29.90 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=55.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009622 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 193 (530)
.++.++++..+++ ..++..|+.++.-+....--+-. ..+|.|+.+..++++.++..|...+..+..-.+.+
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 4667777777777 89999999999888774322211 24799999999999999999999999998665544
No 304
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=81.60 E-value=19 Score=40.29 Aligned_cols=236 Identities=17% Similarity=0.174 Sum_probs=129.2
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHH--------HhhcCCCCHHHHHHHHHHHHHHh
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV--------EFLLREDYPQLQFEAAWALTNIA 145 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv--------~ll~~~~~~~i~~~a~~~L~~l~ 145 (530)
.+..|++.+-++.+++|.-++.+++.++.......-...++.-++..+. +++...--..+++.++|+|+.+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 5677778888999999999999999998765322222222222222111 11111112368899999999888
Q ss_pred cCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcCCCchhHHHHHH
Q 009622 146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNAT 223 (530)
Q Consensus 146 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~~~~~~~~~~a~ 223 (530)
..-..... ...+..+.+++..+..+++...+..+..... ..++.+.. ..++...+.-+ .+.+..++..|.
T Consensus 158 ~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 158 KHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAA 229 (1549)
T ss_pred HhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHH
Confidence 74322211 1346778888887777777766655543321 11122110 01233344444 566778888888
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh-h-HHHHHHHHHHHhccCChH---HHHHHHHhCcHHHHHHhhCCCC
Q 009622 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD-E-VLTDACWALSYLSDGTND---KIQAVIEAGVFPRLAEFLMHPS 298 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~-~-v~~~a~~~l~~l~~~~~~---~~~~~~~~~~i~~L~~lL~~~~ 298 (530)
.++.-...............++..+..++..-|. . -.......+..++...+. ..+.-...|+++.+..++.+.=
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i 309 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI 309 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 8777666554333333334444444444332221 0 001111122222222210 0111123488999999998887
Q ss_pred chhHHHHHHHHhHhhcCCc
Q 009622 299 PSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 299 ~~~~~~a~~~L~nl~~~~~ 317 (530)
..++..++..+..+....+
T Consensus 310 ~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 310 SSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 7888888888888876443
No 305
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=81.40 E-value=70 Score=33.08 Aligned_cols=147 Identities=12% Similarity=-0.009 Sum_probs=85.4
Q ss_pred chhHHHHHHHHH---HHHhcC-CHHH---HHHHHHhCcHHHHHH----HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009622 341 KKSIKKEACWTV---SNITAG-NREQ---IQAVIEANIIGPLVA----LLENAEFDIKKEAAWAISNATSGGTHEQIKFL 409 (530)
Q Consensus 341 ~~~v~~~a~~~L---~nl~~~-~~~~---~~~l~~~~~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 409 (530)
...++..+...+ .....+ .+.. +...+..++.|.+-. -....+...|..+..+|+.++.....-..
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~--- 410 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS--- 410 (501)
T ss_pred ccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc---
Confidence 345666665555 444442 2222 233334455554410 01123678999999999999987532211
Q ss_pred HHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHH
Q 009622 410 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKL 489 (530)
Q Consensus 410 ~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~i 489 (530)
-+-+.+..|.+-|+.++++++..+-++|..++......... ........+ ...+.....+....++..|.+-
T Consensus 411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~---~~~~~~~~~-----~~l~~~~~~~~~~~~R~~avk~ 482 (501)
T PF13001_consen 411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD---EDEQKRLLL-----ELLLLSYIQSEVRSCRYAAVKY 482 (501)
T ss_pred ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc---hhHHHHHHH-----HHHHHhhccchhHHHHHHHHHH
Confidence 13367888888888899999999999999998765442210 000000000 1112222345566678888888
Q ss_pred HHHhCCCCC
Q 009622 490 LETYWLDDE 498 (530)
Q Consensus 490 l~~~~~~~~ 498 (530)
.++.|+.++
T Consensus 483 an~~fpf~d 491 (501)
T PF13001_consen 483 ANACFPFSD 491 (501)
T ss_pred HHHhCCccc
Confidence 888888655
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.13 E-value=32 Score=37.13 Aligned_cols=90 Identities=21% Similarity=0.201 Sum_probs=52.7
Q ss_pred CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHH-----HHHHHHHHHHhcCCHHHHHH-HHHhCc
Q 009622 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK-----KEACWTVSNITAGNREQIQA-VIEANI 371 (530)
Q Consensus 298 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~-----~~a~~~L~nl~~~~~~~~~~-l~~~~~ 371 (530)
+++++.+|+.+|-|+++..+......+ ..+...+.++... +.+ .|-+. -.+... +...+.
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i--------~~v~S~~g~~r~~l~~~~ks~--~le~~----l~~mw~~Vr~ndG 740 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTI--------VAVGSQSGDRRIFLGAGTKSA--KLEQV----LRQMWEAVRGNDG 740 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhh--------hhccccCCCccccccCCCchH--HHHHH----HHHHHHHHhcCcc
Confidence 678999999999999988765442222 1222211121110 000 00000 111122 224578
Q ss_pred HHHHHHHHhcCc-----hhHHHHHHHHHHHhhcCC
Q 009622 372 IGPLVALLENAE-----FDIKKEAAWAISNATSGG 401 (530)
Q Consensus 372 i~~L~~ll~~~~-----~~v~~~a~~aL~nl~~~~ 401 (530)
|..|+.+|+... ..+|.-|+.+|.-|+...
T Consensus 741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc
Confidence 999999998653 469999999999999864
No 307
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=81.12 E-value=31 Score=35.69 Aligned_cols=174 Identities=13% Similarity=0.024 Sum_probs=99.6
Q ss_pred CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--C---------CChhHHHHHHHHHHHhccCChHHHHHH
Q 009622 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--S---------NDDEVLTDACWALSYLSDGTNDKIQAV 281 (530)
Q Consensus 213 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--~---------~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (530)
+++.++...+-..|-.+... .....++..|..+.. . -++.++..++..|+.-.. ...
T Consensus 248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HHh
Confidence 44555666666666555544 112344555555444 1 245566665555544210 001
Q ss_pred HHhCcHHHHHHhhCCC--CchhHHHHHHHH---hHhhcCCchhhHHHhhcCchHHHHHhhc-------CCCchhHHHHHH
Q 009622 282 IEAGVFPRLAEFLMHP--SPSVLIPALRTV---GNIVTGDDMQTQCVIEYQALPCLLNLLS-------GNYKKSIKKEAC 349 (530)
Q Consensus 282 ~~~~~i~~L~~lL~~~--~~~~~~~a~~~L---~nl~~~~~~~~~~~~~~~~l~~L~~lL~-------~~~~~~v~~~a~ 349 (530)
.-..++..+..-+.+. +..++..++..+ ...........-..+...+...+.+.+. ...+...|..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1113333344445555 566777777777 5555544433223333334444444442 111668899999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622 350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
.+||.++...+.... -+-+++..|++-|..++++++..+-.||..++..
T Consensus 396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 999999987665431 1345788888888888899999999999988763
No 308
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.08 E-value=15 Score=34.61 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=55.6
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh----ccC--------CCChHHHHHHHHHHH
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD----LLV--------CPDPRIVTVCLEGLE 438 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~----lL~--------~~~~~v~~~al~~l~ 438 (530)
++|.++.++++.++.+|..++.+|..+...........+.+.|..+.+.+ ++. .+...+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 78999999999999999999999999998765444334566776554433 333 345568888888888
Q ss_pred HHHhhh
Q 009622 439 NILKVG 444 (530)
Q Consensus 439 ~ll~~~ 444 (530)
.++...
T Consensus 200 ~L~~~~ 205 (282)
T PF10521_consen 200 SLLKTQ 205 (282)
T ss_pred HHHHhh
Confidence 887654
No 309
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=80.78 E-value=58 Score=31.72 Aligned_cols=255 Identities=14% Similarity=0.141 Sum_probs=129.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009622 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (530)
Q Consensus 164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 243 (530)
++...+ ....-++.|...|.+...+-|...+. ++..-+.++ .+.+..+++.|+.-|-.+|.++ ....
T Consensus 30 il~~~k-~~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~r 96 (460)
T KOG2213|consen 30 ILKAVK-GTSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSR 96 (460)
T ss_pred HHHHhh-cchHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhh
Confidence 344443 34556777888888887777765444 666777888 7889999999999999999883 2223
Q ss_pred hHHHHHHhhc------------CCChhHHHHHHHHHHH-hccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622 244 ALPALAHLIH------------SNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 244 ~l~~L~~ll~------------~~d~~v~~~a~~~l~~-l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 310 (530)
+.+.|+++|. ..|..+++.++..|.. +..-..+....-++..++..+...|.+-...-....+..|+
T Consensus 97 v~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~ 176 (460)
T KOG2213|consen 97 VNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILA 176 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444432 2356666666555532 22333333333344445555555555544444444555566
Q ss_pred HhhcCC----chhhHHHhhcCchHHHHHh--hcCCCchhHHHHHH----HHHHHHhcCCHHH-HHHHHHhCcHHHHHHHH
Q 009622 311 NIVTGD----DMQTQCVIEYQALPCLLNL--LSGNYKKSIKKEAC----WTVSNITAGNREQ-IQAVIEANIIGPLVALL 379 (530)
Q Consensus 311 nl~~~~----~~~~~~~~~~~~l~~L~~l--L~~~~~~~v~~~a~----~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll 379 (530)
++.... ....+.+.+ ...-+..+ +.-+ +++....-. .++--++.+-+.. .-..+...++|.- .
T Consensus 177 ~lk~~~~k~~~a~lqeLa~--~~e~~a~ldaf~~s-D~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~---f 250 (460)
T KOG2213|consen 177 SLKSLQTKAGEARLQELAE--EQEGLADLDAFNVS-DADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHH---F 250 (460)
T ss_pred hhhcccCCCCHHHHHHHHH--HHhhhhccCcccCC-ChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccc---c
Confidence 554432 111122211 01111111 2222 333332222 2222233332221 1122233444440 1
Q ss_pred hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC------CCChHHHHHHHHHHHHHHh
Q 009622 380 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV------CPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 380 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~------~~~~~v~~~al~~l~~ll~ 442 (530)
.-...+.+...+.+|..|+...+.+.... .++.++++|. ..-++....-++++.+++.
T Consensus 251 dkl~e~rkL~lLK~lAEMss~ttaq~a~q-----~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h 314 (460)
T KOG2213|consen 251 DKLTEERKLDLLKALAEMSSYTTAQAARQ-----MLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALH 314 (460)
T ss_pred ccchHHHHHHHHHHHHHhCccchHHHHHH-----HHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHH
Confidence 11125788888999999988765544444 3555555553 2233455555555555543
No 310
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=80.31 E-value=38 Score=29.39 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=60.9
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009622 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 317 (530)
......+|.+..-+...+.....-|...+..+... ..+.+-.++. .++..+-..|.+.++.+...++.+|..++...+
T Consensus 34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 33467899999988887777666777777777655 4444443333 567778888999999999999999999977665
Q ss_pred hhhHHH
Q 009622 318 MQTQCV 323 (530)
Q Consensus 318 ~~~~~~ 323 (530)
..-..+
T Consensus 113 ~vG~aL 118 (183)
T PF10274_consen 113 MVGEAL 118 (183)
T ss_pred hhhHHH
Confidence 444443
No 311
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=80.29 E-value=7.4 Score=28.15 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
..++++|..|-.... -.+.+...+....+..|..|++++|...|..++..|-
T Consensus 19 ~~~l~~L~~L~~~~~------------t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 19 SRCLDILKKLKKLPI------------TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred HHHHHHHHHHhcCCC------------CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 345666665554332 2677778888888999999999999999999998763
No 312
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=79.86 E-value=23 Score=28.95 Aligned_cols=73 Identities=12% Similarity=0.030 Sum_probs=58.6
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh--HHHHHHHHHHHHHHhh
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP--RIVTVCLEGLENILKV 443 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~--~v~~~al~~l~~ll~~ 443 (530)
++..|.+-+.++++.++..|+..|-.++.++.......+.+.+++..|..++..... .|+..++..+......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 456677788889999999999999999999877787888888999999998876533 3777777766665543
No 313
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=79.83 E-value=52 Score=30.59 Aligned_cols=180 Identities=20% Similarity=0.195 Sum_probs=100.1
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-------chhhhhHhhcCChHHHHHhhcCCCc----hhHHHHHHHHhh
Q 009622 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-------PRCRDLVLSQGGLVPLLAQLNGQPK----LSMLRNATWTLS 227 (530)
Q Consensus 159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-------~~~~~~i~~~~~i~~Ll~ll~~~~~----~~~~~~a~~~L~ 227 (530)
|+-+.+++.+.+ +...+.++..|..++... +..|-.+.-.+.+|.++..+ +.++ ......++..|+
T Consensus 64 Glq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 64 GLQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hHHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHHHHHH
Confidence 334444555544 345566777777776422 11232333334566666666 3333 245566778888
Q ss_pred hhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHH
Q 009622 228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307 (530)
Q Consensus 228 ~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~ 307 (530)
.+|....... ...++....+--..+..+....++..|..-. .++. +...+..++.+|.++-..++..++.
T Consensus 141 ~~a~~~~~~~---La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~ 210 (262)
T PF14225_consen 141 QVAEAQGLPN---LARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPDH-----EFQILTFLLGLLENGPPWLRRKTLQ 210 (262)
T ss_pred HHHHhCCCcc---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cchh-----HHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 8886532221 1222222222111223444555555554321 1111 1245667899999988899999999
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+|..+....+.... ...+++..+.++++.+ .-.+|..+|-++..
T Consensus 211 iL~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 211 ILKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 99999876554432 5556888999999776 34556666655543
No 314
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.74 E-value=14 Score=36.95 Aligned_cols=144 Identities=11% Similarity=0.113 Sum_probs=77.9
Q ss_pred CchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009622 327 QALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 327 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
.+-..|..+|...+ ++++|...+.+|.-|-..+. +.-..++..++.++..++...|.-+..-+...+.+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~-----i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL-----IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 44556777776543 57888888888777643221 11224677788888888777776654444433332111
Q ss_pred HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHH
Q 009622 404 EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIY 483 (530)
Q Consensus 404 ~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~ 483 (530)
.....=....+-..+..+|+.+++.--..++..+.-|-+.+-.. ....+..+..-.-|.++.|.
T Consensus 91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~----------------d~~tV~i~~~acf~~~~ki~ 154 (616)
T KOG2229|consen 91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN----------------DSKTVNIITTACFSKVPKIL 154 (616)
T ss_pred hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc----------------cchhHHHHHHHHhccCcHHH
Confidence 11111112223445678899888875555555555554433221 12222333333567788776
Q ss_pred HHHHHHHH
Q 009622 484 EKSVKLLE 491 (530)
Q Consensus 484 ~~a~~il~ 491 (530)
-.+...+=
T Consensus 155 vs~l~FfL 162 (616)
T KOG2229|consen 155 VSGLRFFL 162 (616)
T ss_pred HhhhHHhc
Confidence 66654443
No 315
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=79.59 E-value=28 Score=35.42 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=86.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHHhc
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTNIAS 146 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-------~~~i~~~a~~~L~~l~~ 146 (530)
.+.++.+.+.++|+..+..|+..|+. ++-++. ++|.++.++..+- +-.+-....+.+..|..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 56778888888899999999888762 334444 4888888886532 24555666666666666
Q ss_pred CChhhHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-Cc
Q 009622 147 GTSEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PK 215 (530)
Q Consensus 147 ~~~~~~~~~~~~g~i~~L~~lL~~----------~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-~~ 215 (530)
++...-.-.=..++|.++.++-+ ..+.+|..|+.++..+|.+-...-+. +...++..+.+.+.+. ..
T Consensus 277 -Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~ 354 (576)
T KOG2549|consen 277 -NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKP 354 (576)
T ss_pred -CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 44433322224567887777632 35679999999999888654432222 3444566666666433 23
Q ss_pred hhHHHHHHHHhhhh
Q 009622 216 LSMLRNATWTLSNF 229 (530)
Q Consensus 216 ~~~~~~a~~~L~~L 229 (530)
.....-++..|..|
T Consensus 355 ~st~YGai~gL~~l 368 (576)
T KOG2549|consen 355 LSTHYGAIAGLSEL 368 (576)
T ss_pred chhhhhHHHHHHHh
Confidence 33333344444433
No 316
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=79.39 E-value=51 Score=40.50 Aligned_cols=251 Identities=14% Similarity=0.064 Sum_probs=136.8
Q ss_pred HHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC----CChh--hhhchHHHHH
Q 009622 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ----PPFD--QVSPALPALA 249 (530)
Q Consensus 176 ~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~----~~~~--~~~~~l~~L~ 249 (530)
...+.++++++-...... ...+..++.-.....+.+++.++..+++.+....+. .... .....+..+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSL------TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 556788888874332211 112333333333667888888887776666655432 1111 1344444444
Q ss_pred Hhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCc
Q 009622 250 HLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (530)
Q Consensus 250 ~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 328 (530)
.+-. ..++.++......+. ..........+.+..+...+....-.++..+...+|+++.+++.+...-+....
T Consensus 535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL 608 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence 4333 346666655544443 112233444556666777788888889999999999999988855433333333
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009622 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 408 (530)
+..+-.+..++ -..+...++.-+..+..+.+..+...++ ..+..++..+.+++..+...+..++..|+..+..+ .+.
T Consensus 609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~-~~~ 685 (2341)
T KOG0891|consen 609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEE-MVK 685 (2341)
T ss_pred HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccch-hhh
Confidence 33333333333 3333333333333333333333333332 34566777778888889999999999998765422 222
Q ss_pred HHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHh
Q 009622 409 LVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 409 l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~ 442 (530)
..+ ..+..+.+.+. .....-+..+++++.++..
T Consensus 686 ~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 686 WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 222 33444444332 3344455567777777764
No 317
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=79.23 E-value=28 Score=33.00 Aligned_cols=126 Identities=12% Similarity=0.196 Sum_probs=88.2
Q ss_pred HHhhcCchHHHHHhhcC-------C---------------CchhHHHHHHHHHHHHhcCCHHHHHH--------------
Q 009622 322 CVIEYQALPCLLNLLSG-------N---------------YKKSIKKEACWTVSNITAGNREQIQA-------------- 365 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~~-------~---------------~~~~v~~~a~~~L~nl~~~~~~~~~~-------------- 365 (530)
.+.+.|++|.|-.+++. . ++..+|.+-...+.+++.+.......
T Consensus 4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF12463_consen 4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN 83 (303)
T ss_pred HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence 45566777777766642 0 01236777788888888733111100
Q ss_pred -------HHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCH-HHHHHHHHcCChHHHHhccCCC---ChHHHHH
Q 009622 366 -------VIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTH-EQIKFLVIQGCIKPLCDLLVCP---DPRIVTV 432 (530)
Q Consensus 366 -------l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~~l~~L~~lL~~~---~~~v~~~ 432 (530)
--+.|++..+++.+... +...|-..+.++-.+..++++ ....++.+.|+++.++..+-++ +..+.+.
T Consensus 84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~ 163 (303)
T PF12463_consen 84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS 163 (303)
T ss_pred ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence 01357788888877654 667899999999999998887 5666888999999998866543 3468899
Q ss_pred HHHHHHHHHhhhhhh
Q 009622 433 CLEGLENILKVGEAE 447 (530)
Q Consensus 433 al~~l~~ll~~~~~~ 447 (530)
..+.|+.+++.....
T Consensus 164 ~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 164 NFDLLGELIKFNRDA 178 (303)
T ss_pred HHHHHHHHHCCCHHH
Confidence 999999999877553
No 318
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.01 E-value=96 Score=35.59 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc------CCCchhHHHHHHHHhhhhccCC-CCCChhhhh
Q 009622 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN------GQPKLSMLRNATWTLSNFCRGK-PQPPFDQVS 242 (530)
Q Consensus 170 ~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~------~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~ 242 (530)
.+..+++...+.++.++....-+ .++ .| .+.+.+++. ......+.+.+..+|.-++.+. +..+.....
T Consensus 853 ~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 35567777777888887643321 111 11 333333332 1225677788888888888877 677777788
Q ss_pred chHHHHHHhhcC-CChhHHHHHHHHHHHhc
Q 009622 243 PALPALAHLIHS-NDDEVLTDACWALSYLS 271 (530)
Q Consensus 243 ~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~ 271 (530)
+++..+..+-.. .|..+--.|+..++.++
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 888888877654 46666666655555554
No 319
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=78.84 E-value=12 Score=30.98 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=56.1
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHH---HHHHHHHH
Q 009622 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAE---IYEKSVKL 489 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~---v~~~a~~i 489 (530)
++..|..-|.+.++.++..|+..|..+++.+.. .|...+.....++.|..+. .+.... |++++..+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~----------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~l 112 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP----------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILEL 112 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH----------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Confidence 466677778889999999999999999987633 2677777777888888864 445554 99999999
Q ss_pred HHHhCC
Q 009622 490 LETYWL 495 (530)
Q Consensus 490 l~~~~~ 495 (530)
|..|-.
T Consensus 113 l~~W~~ 118 (140)
T PF00790_consen 113 LQEWAE 118 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998744
No 320
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.78 E-value=1.1e+02 Score=33.10 Aligned_cols=317 Identities=15% Similarity=0.161 Sum_probs=155.8
Q ss_pred HHHHHhhcCC--ChHHHHHHHHHHHHhhcCC---CCCcHHHHHH---cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009622 76 PVMVAGVWSN--DSGVQYECTTQFRKLLSIE---RSPPIEEVIR---SGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (530)
Q Consensus 76 ~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~---~~~~~~~~~~---~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~ 147 (530)
-.++..+.++ |+.++..|+..+.+.+... ..+....+.+ .-+-..++.++-+.. ..+|.+-..+|.-++..
T Consensus 40 l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~ 118 (960)
T KOG1992|consen 40 LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKR 118 (960)
T ss_pred HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcc
Confidence 3456666543 6788899999998887631 0111112221 112233456666555 68898888888888864
Q ss_pred C-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhh-CCCchhhhhHh------hc-CChHHHHHhhc-------
Q 009622 148 T-SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLVL------SQ-GGLVPLLAQLN------- 211 (530)
Q Consensus 148 ~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~-~~~~~~~~~i~------~~-~~i~~Ll~ll~------- 211 (530)
+ |+....+ ++.|+.-+++.+-.+...++.+-..|- ...+.+|..-+ .. ..-.++..++.
T Consensus 119 DFP~kWptL-----l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~ 193 (960)
T KOG1992|consen 119 DFPDKWPTL-----LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQ 193 (960)
T ss_pred ccchhhHHH-----HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Confidence 4 5555543 466666666554443333333333232 11222221100 00 01123333331
Q ss_pred -CCCchhH-------HHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCC-------------hhHHHHHHHHHHH
Q 009622 212 -GQPKLSM-------LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSND-------------DEVLTDACWALSY 269 (530)
Q Consensus 212 -~~~~~~~-------~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d-------------~~v~~~a~~~l~~ 269 (530)
...+... ..-.+.....|+..+ |.--.......++...+++..++ .+++..+|..+.-
T Consensus 194 ~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~L 273 (960)
T KOG1992|consen 194 RHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNL 273 (960)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHH
Confidence 1122221 222333444454443 22222334556666666665221 2344556666655
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhhCCCC-----chhHHHHHHHHhHhhcCCchh-------------------------
Q 009622 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDDMQ------------------------- 319 (530)
Q Consensus 270 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~~~------------------------- 319 (530)
.+...++..+.++. .++.....+|.+-. ..+...|+..|.+++......
T Consensus 274 Y~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~ 352 (960)
T KOG1992|consen 274 YATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILRE 352 (960)
T ss_pred HHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccch
Confidence 55555555553333 33433344444322 234555666666665422111
Q ss_pred -hHHHhhcCchHHHHHhhcCCCchhHH-HHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHH-HHhcC--chhHHHHHHHHH
Q 009622 320 -TQCVIEYQALPCLLNLLSGNYKKSIK-KEACWTVSNITAGNREQIQAVIEANIIGPLVA-LLENA--EFDIKKEAAWAI 394 (530)
Q Consensus 320 -~~~~~~~~~l~~L~~lL~~~~~~~v~-~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~-ll~~~--~~~v~~~a~~aL 394 (530)
...+.+.+.++.+-.-|..+ |.+.| +.||..+.-++......+-.++.. .+..++. ...++ ++.-+..|.+.+
T Consensus 353 eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~ 430 (960)
T KOG1992|consen 353 EDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLV 430 (960)
T ss_pred hhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhh
Confidence 11223344566666666655 55554 566677777877654444444432 2333333 22232 566677777777
Q ss_pred HHhhcCC
Q 009622 395 SNATSGG 401 (530)
Q Consensus 395 ~nl~~~~ 401 (530)
..++..+
T Consensus 431 talaik~ 437 (960)
T KOG1992|consen 431 TALAIKG 437 (960)
T ss_pred HHHHhhc
Confidence 7776653
No 321
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=77.44 E-value=14 Score=35.86 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=61.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHhcC
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIASG 147 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~------~~~i~~~a~~~L~~l~~~ 147 (530)
-+..+.+.+.+++...+..|+..|+. ++.++. ++|.|+.++...- +-......+..+..|..
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~t------D~gl~~-----LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~- 246 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRT------DPGLQQ-----LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD- 246 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcc------CCCchh-----hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-
Confidence 34555555556666666666666552 233332 5888888876541 14445555666666666
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHhhhC
Q 009622 148 TSEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAG 188 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~lL~~----------~~~~~~~~a~~~L~nl~~ 188 (530)
++...-...=+.++|.++.++-. ..+.+|+.|+.+|+.+|.
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 33332222223467888876622 346899999999999984
No 322
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=76.30 E-value=1.1e+02 Score=32.28 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=49.4
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh-------HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhh
Q 009622 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-------TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIA 187 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~-------~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~ 187 (530)
+-++.+|+.+++++ ++++..|+..+......+... .+.+. .-...|..+..+ .++..+..++.+|+-||
T Consensus 48 ~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLr--phy~~Lk~i~~~~~~~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 48 GDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLR--PHYGVLKEIYESMADSNLKKWLADILSVLA 124 (878)
T ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhc--cchhHHHHHHHhccCchhHhHHHHHHHHHh
Confidence 34888999999999 999999999998877643221 11121 112334444433 55778888999999998
Q ss_pred CCCc
Q 009622 188 GDSP 191 (530)
Q Consensus 188 ~~~~ 191 (530)
....
T Consensus 125 mt~s 128 (878)
T KOG2005|consen 125 MTMS 128 (878)
T ss_pred eeec
Confidence 5544
No 323
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=75.89 E-value=27 Score=35.70 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=58.4
Q ss_pred HHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCC------------CHHHHHHHHHcCChHHHHhc-cCCCC
Q 009622 361 EQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGG------------THEQIKFLVIQGCIKPLCDL-LVCPD 426 (530)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~------------~~~~~~~l~~~~~l~~L~~l-L~~~~ 426 (530)
..+..+.+.++++.|+.+|... +..++..|+..|+.++... .......|.+...+..|++. |....
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 4455566789999999999744 6889999998888876422 24566777777788877664 43233
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 009622 427 PRIVTVCLEGLENILKVG 444 (530)
Q Consensus 427 ~~v~~~al~~l~~ll~~~ 444 (530)
......++.++..+++..
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 455556777777777544
No 324
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=74.91 E-value=81 Score=30.21 Aligned_cols=167 Identities=13% Similarity=0.120 Sum_probs=82.3
Q ss_pred HHHHHHhhcCCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhCC-----------ChHHHHHhhC------CCCHHHHH
Q 009622 118 VPRFVEFLLRED---YPQLQFEAAWALTNIASGTSEHTKVVIDHG-----------AVPIFVKLLY------SPSDDVRE 177 (530)
Q Consensus 118 v~~Lv~ll~~~~---~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g-----------~i~~L~~lL~------~~~~~~~~ 177 (530)
+..|+.++-..+ .-.+|..|+.|+.....++++.+..+++.- ....|+..|- +.++--.-
T Consensus 36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w 115 (312)
T PF04869_consen 36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW 115 (312)
T ss_dssp HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence 444554443322 368999999999999998888888776421 1112333333 11222222
Q ss_pred HHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh----c
Q 009622 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----H 253 (530)
Q Consensus 178 ~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll----~ 253 (530)
-|+.+|..+..+++..|+.+.. + ........... ...++.+..+| .
T Consensus 116 fAa~il~hll~dn~~~Ke~al~-------------------------V-~~~~~~~ge~~----vtliq~v~~lL~~~l~ 165 (312)
T PF04869_consen 116 FAAVILMHLLRDNPEAKEQALR-------------------------V-TEGDESSGEEP----VTLIQTVSELLIASLR 165 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHHTT----------------------------EE--STTS------EEHHHHHHHHTTT---
T ss_pred HHHHHHHHHHhcCHHHHHHHHc-------------------------c-cCCCCCCCCCc----ccHHHHHHHHHHhhhh
Confidence 3444555555555554444322 1 00000001111 12233333332 2
Q ss_pred -CCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC---CCchhHHHHHHHHhHhhc
Q 009622 254 -SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH---PSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 254 -~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~---~~~~~~~~a~~~L~nl~~ 314 (530)
..++.+....+..|..-..+++..+..++.. ..++.|+..... .+.-++--+...||-+..
T Consensus 166 ~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 166 RNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 3466777777777766666677667777765 478888887543 234455556666666554
No 325
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=74.61 E-value=53 Score=35.87 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=95.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..+...+.++++..-...+.++..+..-..-++.. .... ++.-..-.+..- ..+......+|..++..+++...
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~-~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDE-LDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccC-cchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5677777778888887777888888776554222222 1111 111122222222 45677788899999998888888
Q ss_pred HHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 154 VVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 154 ~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
.+.. .+....++.++-+++.++.+.|...|....... .|.. ++..+++ ..-........+++..+...
T Consensus 518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R~e-----~i~~ll~----~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GRLE-----AIQALLQ----SNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cHHH-----HHHHHHH----HhHHHHHHHHHHHHHHHHhh
Confidence 8775 678889999999999999999999999987422 2222 3333333 22345566777777777765
Q ss_pred C
Q 009622 233 K 233 (530)
Q Consensus 233 ~ 233 (530)
.
T Consensus 587 ~ 587 (727)
T PF12726_consen 587 K 587 (727)
T ss_pred h
Confidence 4
No 326
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=74.45 E-value=57 Score=28.28 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=53.7
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcC-CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009622 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (530)
..++.+++-|...+...+--|...+..+... ..+..- -+-..++..|...|.+. ++++...++.+|..++..++.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kil-PvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKIL-PVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhh
Confidence 4567777777777777777777777777665 332222 22346778888888888 999999999999999654433
No 327
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=74.43 E-value=14 Score=26.81 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=31.9
Q ss_pred HHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622 459 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 459 ~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
.+.+.+.+.-..+..|..|++++|...|..++..|-
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWK 72 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 667788888889999999999999999999998763
No 328
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=74.40 E-value=7.5 Score=25.79 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=30.8
Q ss_pred HHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 009622 459 TQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLETY 493 (530)
Q Consensus 459 ~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~~ 493 (530)
.+.+.+.|....+..|..| ++++|...|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6778889999999999988 9999999999999886
No 329
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.86 E-value=19 Score=29.82 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=57.5
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC-hH---HHHHHHHHHHHHHhhh
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD-PR---IVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~---v~~~al~~l~~ll~~~ 444 (530)
++..|.+-|.++++.++..|+..|-.++.++.......+.+..++..|..++.... .. |...++..+...-...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45677788888999999999999999999887777778777888899998886433 22 7777777666555443
No 330
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=73.78 E-value=17 Score=28.76 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=51.3
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-----h-cCCCHHHHHHHH
Q 009622 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-----Q-THDNAEIYEKSV 487 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-----~-~~~~~~v~~~a~ 487 (530)
++..|..-|.+.++.++..+|..|..+++.+... |...+.....+..+..+ . ...+..|++++.
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~----------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~ 107 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER----------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAI 107 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH----------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHH
Confidence 4566666677889999999999999999887542 45555555555554332 1 345889999999
Q ss_pred HHHHHhC
Q 009622 488 KLLETYW 494 (530)
Q Consensus 488 ~il~~~~ 494 (530)
.+++.+.
T Consensus 108 ~l~~~w~ 114 (115)
T cd00197 108 ELVQLWA 114 (115)
T ss_pred HHHHHHh
Confidence 9998774
No 331
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=73.25 E-value=3.7 Score=25.34 Aligned_cols=38 Identities=32% Similarity=0.446 Sum_probs=23.8
Q ss_pred HhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhh
Q 009622 11 SRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR 49 (530)
Q Consensus 11 ~~~~~~k~~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R 49 (530)
+|...||+.+++.+..+||++ ..+.-|.+|-+..+..|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR~~-~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERRRE-FLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHHHH-HHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHHHH-HHHHHHHHhHHHHHhcc
Confidence 467789986666666655544 45666777777666655
No 332
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=72.75 E-value=69 Score=31.43 Aligned_cols=154 Identities=18% Similarity=0.088 Sum_probs=88.3
Q ss_pred HHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc----------CCChhHHHHHHHHHHHhccCC
Q 009622 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------SNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~----------~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.++..|.+......+..++.++.-|+++............+..|+.+-. ..|..++..++.||+|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 3444553333344455566666677776644444444555555554432 235678899999999999888
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCC-----chhHHHHHHHHhHhhc-CCchhhHHHhhcCchHHHHHhhcCCC--------
Q 009622 275 NDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVT-GDDMQTQCVIEYQALPCLLNLLSGNY-------- 340 (530)
Q Consensus 275 ~~~~~~~~~~~~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~-------- 340 (530)
....+..........+.+.+...- ..+...-++.|--+.. ..+...+.+.+.++++.+..++.+..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 877676777666666666553311 1112222222222211 12445556678888899988886421
Q ss_pred ------chhHHHHHHHHHHHHhcC
Q 009622 341 ------KKSIKKEACWTVSNITAG 358 (530)
Q Consensus 341 ------~~~v~~~a~~~L~nl~~~ 358 (530)
+.....++..++.|++.+
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeec
Confidence 113445677778887763
No 333
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.49 E-value=1.7e+02 Score=32.81 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=55.2
Q ss_pred HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC---CCChHHHHHHHHHHHH
Q 009622 363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV---CPDPRIVTVCLEGLEN 439 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~---~~~~~v~~~al~~l~~ 439 (530)
.+.+...|++..+++.+-...++++.+-+..+..++.. ++...+.+.+.|+++.|.+++. +........++.++..
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRa-spfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARA-SPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhc-CCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 45667889999999988777889999999999998876 4456666677788888777664 2333344445555554
Q ss_pred H
Q 009622 440 I 440 (530)
Q Consensus 440 l 440 (530)
+
T Consensus 980 L 980 (2799)
T KOG1788|consen 980 L 980 (2799)
T ss_pred H
Confidence 4
No 334
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=71.73 E-value=1e+02 Score=30.07 Aligned_cols=250 Identities=10% Similarity=0.110 Sum_probs=125.6
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh-
Q 009622 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE- 150 (530)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~- 150 (530)
.+..+.+++..+.+.-+ ...|.+.+-+..... ..-.. ..+..-+++..+.+ ..+|.+|+.-|-.+|.++.-
T Consensus 24 v~~y~~il~~~k~~~k~-k~lasq~ip~~fk~f-p~la~-----~a~da~~d~~ed~d-~~ir~qaik~lp~fc~~d~~~ 95 (460)
T KOG2213|consen 24 VDDYEGILKAVKGTSKE-KRLASQFIPRFFKHF-PSLAD-----EAIDAQLDLCEDDD-VGIRRQAIKGLPLFCKGDALS 95 (460)
T ss_pred HHHHHHHHHHhhcchHH-HHHHHHHHHHHHhhC-chhhh-----HHHHhhhccccccc-hhhHHHHHhccchhccCchhh
Confidence 34667777777654444 445777777776553 22222 24566678888877 89999999999999986311
Q ss_pred ----hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHh-hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009622 151 ----HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (530)
Q Consensus 151 ----~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~n-l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~ 225 (530)
....+...+-+..|.......+..+++.++..|.. +..-.+++-..-++..++..+-+.| .+-+.+-....+..
T Consensus 96 rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal-~dVtgeef~lfm~~ 174 (460)
T KOG2213|consen 96 RVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKAL-EDVTGEEFTLFMDI 174 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHH-HhccHHHHHHHHHH
Confidence 11112223334444443334577788887776643 3222222222223333444444444 33334444555666
Q ss_pred hhhhccCCCCCChhhhhch---HHHHHHh--hcCCChhHHHHHHHHHH----HhccCChH-HHHHHHHhCcHHHHHHhhC
Q 009622 226 LSNFCRGKPQPPFDQVSPA---LPALAHL--IHSNDDEVLTDACWALS----YLSDGTND-KIQAVIEAGVFPRLAEFLM 295 (530)
Q Consensus 226 L~~L~~~~~~~~~~~~~~~---l~~L~~l--l~~~d~~v~~~a~~~l~----~l~~~~~~-~~~~~~~~~~i~~L~~lL~ 295 (530)
|.++..............+ ...+..+ +.-.|++.....+.|+. ..+.+.++ ..-..+...+++. ...
T Consensus 175 L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~---~fd 251 (460)
T KOG2213|consen 175 LASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH---HFD 251 (460)
T ss_pred HHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc---ccc
Confidence 6666655422222222222 2223332 44456665555444443 33333222 1111222233332 111
Q ss_pred CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhc
Q 009622 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337 (530)
Q Consensus 296 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 337 (530)
......+...+.+|+.++..+..+.. ...+|.++.+|.
T Consensus 252 kl~e~rkL~lLK~lAEMss~ttaq~a----~q~Lpsi~elLk 289 (460)
T KOG2213|consen 252 KLTEERKLDLLKALAEMSSYTTAQAA----RQMLPSIVELLK 289 (460)
T ss_pred cchHHHHHHHHHHHHHhCccchHHHH----HHHHHHHHHHHH
Confidence 12345677788888888876643321 234555555553
No 335
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=71.36 E-value=73 Score=34.25 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=56.3
Q ss_pred cHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009622 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (530)
Q Consensus 286 ~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (530)
++..|-..+. .+..|..++..|+.++...+...-.+++..+++.|+++|..+.+..+...|+.+|.-+.=.
T Consensus 71 ~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 71 LFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred HHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 3444444444 3468899999999999999988888999999999999998876777778888888777643
No 336
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=70.90 E-value=26 Score=29.02 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=56.7
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH
Q 009622 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 322 (530)
.-...|+.+|+.+...-....+..|.+=..-..+. ...++.+++..++.-=.....--...|+..||.+..|..
T Consensus 22 ~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN----- 95 (154)
T PF11791_consen 22 EQTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN----- 95 (154)
T ss_dssp HHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-----
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-----
Confidence 33445677777665443344555555544322222 234566666655544333333346778888888876544
Q ss_pred HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+..|+.+|.++ +..+...|+.+|.+..-
T Consensus 96 ------V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ------VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ------HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ------HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 67899999888 89999999999998654
No 337
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=70.51 E-value=95 Score=29.89 Aligned_cols=184 Identities=11% Similarity=0.102 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-hCC---C-----CchhHHHHHHHHhHhhcCCchhhHHHhhcCch
Q 009622 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF-LMH---P-----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~---~-----~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 329 (530)
++..++..+.......++. . .+...+++.++.. |.+ . ++.+..-...++..+..........++ ..++
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~-~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~-~~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-E-EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQIL-EAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-H-HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhccCCH-H-HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHH-HHHH
Confidence 3455555555544433322 2 2333566666653 321 2 233333333333333333333343444 3466
Q ss_pred HHHHHhhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---
Q 009622 330 PCLLNLLSGNY--KKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLENAEFDIKKEAAWAISNATSGG--- 401 (530)
Q Consensus 330 ~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~--- 401 (530)
...+.++..+. -|+.|..-...|..+...+....-.+-. ..++..++-.+++.+.++...++.++..+....
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 67777776542 4788888777887776643332211110 124566666778889999999999998887633
Q ss_pred CHHHHHHHHHcCChHHHHhcc----CCCChHHHHHHHHHHHHHHhhhh
Q 009622 402 THEQIKFLVIQGCIKPLCDLL----VCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 402 ~~~~~~~l~~~~~l~~L~~lL----~~~~~~v~~~al~~l~~ll~~~~ 445 (530)
+++....+.+.-.++.|..++ +..+...-......|..++...+
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH
Confidence 346666667665555544443 33444444445567777776543
No 338
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.58 E-value=1.4e+02 Score=30.66 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=60.7
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009622 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 381 (530)
...|+.-++-++.|.+-..+.+ +..+-.++..+ ++.+|+..-.+.+-+...+|.. +++..|-+....
T Consensus 621 e~~a~Lg~AliamGedig~eMv-----lRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~shd 687 (881)
T COG5110 621 ESLALLGCALIAMGEDIGSEMV-----LRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSSHD 687 (881)
T ss_pred HHHHHhhhHHhhhcchhhHHHH-----HHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhccc
Confidence 3334444444555555443332 45566777777 8899998888888877666542 477788888888
Q ss_pred CchhHHHHHHHHHHHhhcCCCH
Q 009622 382 AEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 382 ~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
++.++...+..+++-+-.+...
T Consensus 688 ~dl~v~~ntIfamGLiGAGT~N 709 (881)
T COG5110 688 GDLNVIINTIFAMGLIGAGTLN 709 (881)
T ss_pred cchhHHHHHHHHhhccccCcch
Confidence 8999999999998877665443
No 339
>PRK09169 hypothetical protein; Validated
Probab=67.84 E-value=3e+02 Score=33.89 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=7.1
Q ss_pred ChhHHHHHHHHHHHh
Q 009622 256 DDEVLTDACWALSYL 270 (530)
Q Consensus 256 d~~v~~~a~~~l~~l 270 (530)
++.-+.+++++|+..
T Consensus 329 ~aQ~vAN~LNALSKW 343 (2316)
T PRK09169 329 NAQAVANALNALSKW 343 (2316)
T ss_pred CHHHHHHHHHHHhcC
Confidence 344444555555543
No 340
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=67.01 E-value=62 Score=31.55 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=66.1
Q ss_pred hchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC----------CCchhHHH
Q 009622 242 SPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH----------PSPSVLIP 304 (530)
Q Consensus 242 ~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~~~~~ 304 (530)
..++|.++.++... +-......+..+..|..+..-.....+. .+++.++.++-. +.|.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45677777766422 4566677777777777766544443333 366777766522 34789999
Q ss_pred HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHHHHHHHHHH
Q 009622 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNI 355 (530)
Q Consensus 305 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl 355 (530)
|..+++.++........ -+...+...+.+.+.++..+ ....-|...|+.+
T Consensus 288 AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999864332221 12334555666666654233 2355555555554
No 341
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=66.85 E-value=1.1e+02 Score=28.52 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=44.0
Q ss_pred hhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009622 70 KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 70 ~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
..++.+..+...|+.+|+... .+.+++... .+++..++|.|+..=. + +.+...++..|.+++-
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 355788899999998887665 444444432 1344567777766533 3 7899999999999987
No 342
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=66.65 E-value=1.1e+02 Score=30.98 Aligned_cols=303 Identities=15% Similarity=0.138 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHhhhCCCchhhhhHhhcCChH-HHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh-hhchHHHHHH
Q 009622 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ-VSPALPALAH 250 (530)
Q Consensus 173 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~-~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~l~~L~~ 250 (530)
...|..++.+||.++..-+...-. .... .|+..| ++....-+..++.++...+.......... ...+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~----~~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQ----EIFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHH----HHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 456778889999988654321111 1233 467777 66666666667777777766542211111 3455566777
Q ss_pred hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH-----HHHHhhCC---C--CchhHHHHHHHHhHh----hcC-
Q 009622 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP-----RLAEFLMH---P--SPSVLIPALRTVGNI----VTG- 315 (530)
Q Consensus 251 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~-----~L~~lL~~---~--~~~~~~~a~~~L~nl----~~~- 315 (530)
.|..+....=.+....+..+-.........+.+.|.++ .|-...+. . +.-....|-.+.+.. ...
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhc
Confidence 77644332223333344444444444455556666522 22111111 1 111112222222211 110
Q ss_pred --Cchh--hHHHhh--cCc---hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chh
Q 009622 316 --DDMQ--TQCVIE--YQA---LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFD 385 (530)
Q Consensus 316 --~~~~--~~~~~~--~~~---l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~ 385 (530)
.... .+.+-+ ..+ +......-..- +..|+..++.++..+-.- |+.. +.+|..|++-++.+ +..
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~-~~~V~Aa~A~A~v~l~~l-P~KL-----nPiIrpLMdSIK~Een~~ 328 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQTSR-DVRVLAAAASALVALGGL-PKKL-----NPIIRPLMDSIKREENEL 328 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC-CCCc-----cHHHHHHHHHhhccccHH
Confidence 0000 000000 001 11111111111 333444444444444321 1111 23677888888776 689
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC---CChHHH--HHHHHHHHHHHhhhhhhhhcC--CCCchhh
Q 009622 386 IKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC---PDPRIV--TVCLEGLENILKVGEAEKNLG--NTDVNVF 458 (530)
Q Consensus 386 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~---~~~~v~--~~al~~l~~ll~~~~~~~~~~--~~~~~~~ 458 (530)
+|..++.+|..|+.... ..+.=-...++.-|+.++.. .-|.+- ...-..+..+.+......... ......-
T Consensus 329 LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~~ 406 (441)
T PF12054_consen 329 LQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQK 406 (441)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhhh
Confidence 99999999998876331 00000112356677777742 222222 111222222222111100000 0012223
Q ss_pred HHHhhhhccHHHHHHHhcCCCHHHHHHHHHH
Q 009622 459 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKL 489 (530)
Q Consensus 459 ~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~i 489 (530)
.-.+.+-|+...|..|..+..+++.++--.+
T Consensus 407 ~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~L 437 (441)
T PF12054_consen 407 EARIQRRGAELALEQLAKRFGSSLFEKLPKL 437 (441)
T ss_pred hhHHHhcCHHHHHHHHHHHHhHHHHHhhhHH
Confidence 4457788888888888887777776655444
No 343
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=66.27 E-value=35 Score=26.99 Aligned_cols=70 Identities=7% Similarity=-0.019 Sum_probs=52.7
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc-----c-CCCChHHHHHHHHHHHHH
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDL-----L-VCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l-----L-~~~~~~v~~~al~~l~~l 440 (530)
++..|..-+.+.++.++..|+..|-.++.+++......+.+..++..++.+ . ...+..|+..++..+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 456677778888999999999999999999988888887777766666543 1 133567888777766543
No 344
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=65.87 E-value=98 Score=27.50 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=88.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHhhhCCCchhhhh
Q 009622 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQA-VWALGNIAGDSPRCRDL 196 (530)
Q Consensus 119 ~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a-~~~L~nl~~~~~~~~~~ 196 (530)
..+..+..++. .+.+..|+.++.......... .++.+-..+.. ++..+.+.. ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34556667776 788888887776544311111 24556666655 677777766 45556553221
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
....+.+...+ .+.+.-.++.++-++...... .....++..+...+.+++.-++..+.|+|..++..+++
T Consensus 119 ---~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 ---PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ---GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ---HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 12344455555 778888888887777665554 23345566666777788899999999999999988877
Q ss_pred HHHHHHHh
Q 009622 277 KIQAVIEA 284 (530)
Q Consensus 277 ~~~~~~~~ 284 (530)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 345
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=65.60 E-value=36 Score=38.35 Aligned_cols=232 Identities=18% Similarity=0.186 Sum_probs=113.7
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH-HHhCCChHHHHHhh---------C-CCCHHHHHHHHHHHH
Q 009622 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV-VIDHGAVPIFVKLL---------Y-SPSDDVREQAVWALG 184 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~lL---------~-~~~~~~~~~a~~~L~ 184 (530)
+++..|+..+-++. -++|.-++.++..+...+...... ..+. .+-.++..+ . +--..+++.++|+|+
T Consensus 77 s~~e~L~~~~~~~~-we~rhg~~i~lrei~~~h~~~~~~~~led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQ-WEIRHGAAIALREILKTHGDSLSYELLED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHhcCch-hhhhcCcchhhhhHHHHhcchhhHHHHHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 34666777777766 577887777777776633221111 1111 111111111 1 112368999999999
Q ss_pred hhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHH
Q 009622 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC 264 (530)
Q Consensus 185 nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~ 264 (530)
.+..+-... .+ ...+..+.+++ ..+.-+++...+..+.+...............+++.....+.+.+.+++..+.
T Consensus 155 ~~l~~~~~s--~~--~~~~~il~q~~-~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 155 AYLKHMDES--LI--KETLDILLQML-RQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHHhhhhH--hh--HHHHHHHHHHH-cCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence 887543321 11 11345555555 33333333322222222111111111123345566677778888888888887
Q ss_pred HHHHHhccCChHH-HHHHHHhCcHHHHHHhhCCCCc-h-hHHHHHHHHhHhhcCCchh---hHHHhhcCchHHHHHhhcC
Q 009622 265 WALSYLSDGTNDK-IQAVIEAGVFPRLAEFLMHPSP-S-VLIPALRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSG 338 (530)
Q Consensus 265 ~~l~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~-~-~~~~a~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~ 338 (530)
..+..+....... .+.+. .++..+..++..-+. . -.......+..++...+.. .+.-.+.|++|.+...+.+
T Consensus 230 ~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 7776655432111 11111 122233333222111 0 0111111222233222100 1111235899999999998
Q ss_pred CCchhHHHHHHHHHHHHhc
Q 009622 339 NYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~ 357 (530)
. -..++..++..+..+.+
T Consensus 308 ~-i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 308 T-ISSVRRAALETLAMLLE 325 (1549)
T ss_pred H-HHHHHHHHHHHHHHHHh
Confidence 8 78889999998888876
No 346
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=65.35 E-value=1.9e+02 Score=30.56 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=79.5
Q ss_pred HHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh---hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009622 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI---EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (530)
Q Consensus 290 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~---~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (530)
.+..+..-.+..+-+|+-+|.-++.+......... ...++..++..+. . ++..+.-++++|.|+..+ +.....+
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~-~~g~~~~ 625 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSN-PAGRELF 625 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccC-HHHHHHH
Confidence 34445556677888888888877765443322221 2346666666666 4 778889999999999887 4433333
Q ss_pred HH--hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH----HHhccCC-CChHHHHHHHHHHHH
Q 009622 367 IE--ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP----LCDLLVC-PDPRIVTVCLEGLEN 439 (530)
Q Consensus 367 ~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~----L~~lL~~-~~~~v~~~al~~l~~ 439 (530)
.. ..++..+...-..++..++........|.+..- .+.-.+.+..+. +..+++. +|-+-....+.+|.+
T Consensus 626 ~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l----~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Algt 701 (745)
T KOG0301|consen 626 MSRLESILDPVIEASSLSNKNLQIALATLALNYSVLL----IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGT 701 (745)
T ss_pred HHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH----HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHh
Confidence 32 123333333333334566666665555654311 111011223332 2333332 233344556677777
Q ss_pred HHhhhh
Q 009622 440 ILKVGE 445 (530)
Q Consensus 440 ll~~~~ 445 (530)
++..+.
T Consensus 702 L~t~~~ 707 (745)
T KOG0301|consen 702 LMTVDA 707 (745)
T ss_pred hccccH
Confidence 776553
No 347
>PLN03205 ATR interacting protein; Provisional
Probab=65.31 E-value=1.4e+02 Score=29.20 Aligned_cols=160 Identities=15% Similarity=0.189 Sum_probs=91.9
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHH---HHHHh-hCCCCchhHHHHHHHHhHhhc
Q 009622 242 SPALPALAHLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFP---RLAEF-LMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~---~L~~l-L~~~~~~~~~~a~~~L~nl~~ 314 (530)
..+++.|+.+..-++.-+...+++.|..+.. ++..+...-.+.+++. .+.++ ..+.+..++..|+.++.-|..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 4556666666666666666666666655432 2222233333333332 22222 234567788889888877776
Q ss_pred CCchh--hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH---------------------H---
Q 009622 315 GDDMQ--TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI---------------------E--- 368 (530)
Q Consensus 315 ~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---------------------~--- 368 (530)
.++.+ ++.+....+++.+..+|+.+....|+++|...|--+... |.....+. .
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHHHHhcCCccccccccccccccccccHHHH
Confidence 55533 333445567888888888764667888887655433211 11111111 0
Q ss_pred hCcHHHHHHHHhcC-----chhHHHHHHHHHHHhhcCCC
Q 009622 369 ANIIGPLVALLENA-----EFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 369 ~~~i~~L~~ll~~~-----~~~v~~~a~~aL~nl~~~~~ 402 (530)
..++.-|-+++..+ +.++++.++..|.-++..|.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 11344555555433 67899999999999987663
No 348
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.45 E-value=40 Score=34.11 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=70.2
Q ss_pred HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhh
Q 009622 379 LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVF 458 (530)
Q Consensus 379 l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~ 458 (530)
+..+|+.+..+.|..|..--.+ .+ .++..|-.-+.+.++.++..||.+|..+++.+... |
T Consensus 14 l~~pDWa~NleIcD~IN~~~~~-~~---------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~----------f 73 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINSTEGG-PK---------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS----------F 73 (470)
T ss_pred ccCccHHHHHHHHHHHhcCccC-cH---------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH----------H
Confidence 4445666666666555433222 22 24666777788888899999999999888876442 5
Q ss_pred HHHhhhhccHHHHHHH-hcC-CCHHHHHHHHHHHHHhCCCCCC
Q 009622 459 TQMIDDAEGLEKIESL-QTH-DNAEIYEKSVKLLETYWLDDED 499 (530)
Q Consensus 459 ~~~~~~~~~~~~l~~l-~~~-~~~~v~~~a~~il~~~~~~~~~ 499 (530)
...+.+.++++.+..+ -++ .+..|++++..+|+.|.....+
T Consensus 74 h~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 74 HLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 6677777777776665 456 7889999999999998654333
No 349
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=62.92 E-value=62 Score=27.61 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHhhcCCC-----CC---cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-h
Q 009622 87 SGVQYECTTQFRKLLSIER-----SP---PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI-D 157 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~~-----~~---~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~ 157 (530)
...+.-++..+..++...+ .+ ....++...+.+.+.+.+.+++ +.+-..+++++..+... .+..+. +
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~e 111 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3445556666665554421 22 4556677788899999888877 88999999999998863 222222 1
Q ss_pred CC-ChHHHHH-hhCCCC--HHHHHHHHHHHHhhhCCCchhhhhHhh
Q 009622 158 HG-AVPIFVK-LLYSPS--DDVREQAVWALGNIAGDSPRCRDLVLS 199 (530)
Q Consensus 158 ~g-~i~~L~~-lL~~~~--~~~~~~a~~~L~nl~~~~~~~~~~i~~ 199 (530)
.+ .++.++. ++++++ ..-+..++.++..++.+..-..+....
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~N 157 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVN 157 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 12 3444444 666533 467888999999999877655555443
No 350
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=62.77 E-value=13 Score=27.68 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=44.3
Q ss_pred hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHH
Q 009622 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL 267 (530)
Q Consensus 198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l 267 (530)
.+..++.|+..++....+.+++...+.|+.++.......-..-...++..+......+++.+...|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4455788888887677789999999999999887653222222233344444444455666666655544
No 351
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=62.32 E-value=51 Score=27.30 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=56.1
Q ss_pred cHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhccCC---CChHHHHHHHHHHHHHHhh
Q 009622 371 IIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP-LCDLLVC---PDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 371 ~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL~~---~~~~v~~~al~~l~~ll~~ 443 (530)
.+..|.+-+.+ .++.++..|+..|-.++.++.......+...+++.. |+.++.. .+..|...++..+......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 44556666664 588999999999999999988888888888899987 8998863 2347888887777766543
No 352
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=62.18 E-value=2.1e+02 Score=30.16 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHH
Q 009622 131 PQLQFEAAWALTNIASGTSEHTKVVI---DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll 207 (530)
.+++.-|+-+|.-++...+..-..+. .+.++..++..+. .++..+-.++++|.|+..+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 57777788777777764332222211 2334555555554 4567778899999999877 4456555443 22222
Q ss_pred Hhhc---CCCchhHHHHHHHHhhhhcc--CCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHH
Q 009622 208 AQLN---GQPKLSMLRNATWTLSNFCR--GKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV 281 (530)
Q Consensus 208 ~ll~---~~~~~~~~~~a~~~L~~L~~--~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (530)
..+. ...+..++.+......|++- ............+...+..++.. +|-+.....+.+|++|+..+...++ +
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-L 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-H
Confidence 2221 22334444433333333322 11111111112222222222322 2344566678888888877655444 3
Q ss_pred HHhCcHHHHHHhhCC
Q 009622 282 IEAGVFPRLAEFLMH 296 (530)
Q Consensus 282 ~~~~~i~~L~~lL~~ 296 (530)
...--+..++..++.
T Consensus 713 A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKE 727 (745)
T ss_pred HHhcCHHHHHHHHHH
Confidence 222334445554443
No 353
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=61.48 E-value=2e+02 Score=29.54 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhc--CCCCchhhHHHhhhhccHHHHHHHhc
Q 009622 403 HEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNL--GNTDVNVFTQMIDDAEGLEKIESLQT 476 (530)
Q Consensus 403 ~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~ 476 (530)
....+++.+.++++.|+++|+ ..++.++..|.+.|..|+......... ...+.+++.+.+.....+++|...+-
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence 466778889999999999997 456778999999999998876543321 11146889999999999998887654
No 354
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=61.37 E-value=1.6e+02 Score=28.39 Aligned_cols=181 Identities=11% Similarity=0.128 Sum_probs=105.8
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH-hhc---CC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcH
Q 009622 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN-LLS---GN----YKKSIKKEACWTVSNITAGNREQIQAVIEANII 372 (530)
Q Consensus 301 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~---~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 372 (530)
++...+..+.......+... .+...++|.|+. +|. .. .++++-.-...++..+-....+.+..+++ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~--~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPE--EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HH--HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 55666666666665444222 233455666555 332 11 13444444444444444433344444444 466
Q ss_pred HHHHHHHhcC---chhHHHHHHHHHHHhhcCC-------CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622 373 GPLVALLENA---EFDIKKEAAWAISNATSGG-------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 373 ~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~ 442 (530)
...+.++..+ -|+.|..-...|..+...+ +++..+. ++..+.-.+++.++++...++.++..++.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 7777777654 3788888777777776643 2222222 45666677789999999999999999998
Q ss_pred hhhhhhhcCCCCchhhHHHhhhhccHHHHHH----HhcCCCHHHHHHHHHHHHHhCCC
Q 009622 443 VGEAEKNLGNTDVNVFTQMIDDAEGLEKIES----LQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
...+. ...+...|-....++.+.+ +.+..+....+....++..+|.-
T Consensus 195 ~~~~~-------~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 195 NVSKT-------NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHH--------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred HHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 77651 1123444444554555444 45667777777778888888853
No 355
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.11 E-value=1e+02 Score=33.80 Aligned_cols=65 Identities=22% Similarity=0.245 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcC-----CCHHHHHHHHHcCChHHHHh-ccCC
Q 009622 360 REQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSG-----GTHEQIKFLVIQGCIKPLCD-LLVC 424 (530)
Q Consensus 360 ~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~~~l~~L~~-lL~~ 424 (530)
...++.+-+..+++.+++++... ++.++..|...|+.++.. +.....++|.....+..|+. +|+.
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~ 251 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLED 251 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccC
Confidence 45566666788999999999766 689999999999999987 66677788887777777655 5553
No 356
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=61.01 E-value=10 Score=29.50 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHH
Q 009622 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177 (530)
Q Consensus 135 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~ 177 (530)
...+..+..++. .|+.-..+++.|+++.|+.+|.+.+..+..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 455667777777 788888999999999999999998776643
No 357
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=60.98 E-value=38 Score=32.81 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=43.0
Q ss_pred CcHHHHHHcC--CHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCChhhHHHHH------hCCChHHHHHh
Q 009622 107 PPIEEVIRSG--VVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEHTKVVI------DHGAVPIFVKL 167 (530)
Q Consensus 107 ~~~~~~~~~g--~v~~Lv~ll~~~~--~~~i~~~a~~~L~~l~~~~~~~~~~~~------~~g~i~~L~~l 167 (530)
.....++..+ ++..|++++..++ ...++..|+.+|..++.......+.+. .+|++..+++-
T Consensus 254 ~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR~ 324 (329)
T PF06012_consen 254 QFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLRK 324 (329)
T ss_pred HHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHHH
Confidence 3455566555 8999999998754 468999999999999996655544332 34666666553
No 358
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=60.09 E-value=56 Score=25.53 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=54.2
Q ss_pred CchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCC
Q 009622 327 QALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 327 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 401 (530)
|++..+...+.+.. +..-|+.+..+++.+.......+. .+.|.++.+|.+. .++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 56666667776652 234588888888888763222221 3566677777665 6789999999999998877
Q ss_pred CHHHHHHHHH
Q 009622 402 THEQIKFLVI 411 (530)
Q Consensus 402 ~~~~~~~l~~ 411 (530)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 7676666554
No 359
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=59.12 E-value=1e+02 Score=25.49 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=63.8
Q ss_pred cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhH
Q 009622 381 NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT 459 (530)
Q Consensus 381 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~ 459 (530)
.+|..+..+.|..+.. -..+ +. .++..|..=|. +.++.++..++..|..+++.+... |.
T Consensus 16 ~~dw~~ileicD~In~-~~~~-~k--------~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~----------fh 75 (141)
T cd03565 16 SEDWGLNMEICDIINE-TEDG-PK--------DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR----------FH 75 (141)
T ss_pred CcCHHHHHHHHHHHhC-CCCc-HH--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH----------HH
Confidence 3455666666665532 2221 11 23455555454 468889999999999998876432 56
Q ss_pred HHhhhhccHHH-HHHHhc---CCCHHHHHHHHHHHHHhCCCCC
Q 009622 460 QMIDDAEGLEK-IESLQT---HDNAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 460 ~~~~~~~~~~~-l~~l~~---~~~~~v~~~a~~il~~~~~~~~ 498 (530)
..+..-++++. |..+.. ....+|+.+...+++.|-....
T Consensus 76 ~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 76 VLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 66666777776 777754 2456899999999999865443
No 360
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.59 E-value=2.2e+02 Score=31.09 Aligned_cols=251 Identities=14% Similarity=0.115 Sum_probs=142.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
..+=+.++++....|-++...+-++....+.| .++.+ ..-.|.+.+..++ -.+|...+++...- ......+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~Pfp---ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~----g~hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKYPFP---IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQS----GKHLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhCCch---hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhc----cccchhh
Confidence 34445777777777778887777776543222 23332 3446677777777 68888877777632 2222222
Q ss_pred Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622 156 ID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 156 ~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
.. ..++..+.....+.|+.-+..++.+++.+..--|+ ......++..-..+++.--.+.++.+..+++....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 21 23444444455668899999999999987654443 33455555554345555555677777777765532
Q ss_pred CCChhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhH
Q 009622 235 QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGN 311 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~n 311 (530)
. ...++...+..++...+ ....-..+.++..+...... ...+....+.++.. +..+....-+.++.+
T Consensus 171 ~----FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 D----FACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred h----hHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 1 11223333444444332 33445566677776543221 11233445555543 333444555666666
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
++...- ..-.+-+..+.++++.+....++..+.|.+.+++.
T Consensus 241 Lasrs~-----~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSL-----VAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHH-----HHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 664222 11234567778888755466777778888888764
No 361
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=58.49 E-value=1.8e+02 Score=28.18 Aligned_cols=192 Identities=10% Similarity=0.028 Sum_probs=94.9
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHH
Q 009622 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQA 280 (530)
Q Consensus 202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~ 280 (530)
++..+..++.+..++......+.++..=+..- .......++..+.+.+....+.++..-+..++.+... .......
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 56667777767777777777666665433221 1222356777888888888777888777777776540 0001111
Q ss_pred HHHhCcHHHHHHhhC----CCCchh----HHHHHHHHhHhhcCCchhhHH-------Hh-hc--C--chHHHHHhhcCCC
Q 009622 281 VIEAGVFPRLAEFLM----HPSPSV----LIPALRTVGNIVTGDDMQTQC-------VI-EY--Q--ALPCLLNLLSGNY 340 (530)
Q Consensus 281 ~~~~~~i~~L~~lL~----~~~~~~----~~~a~~~L~nl~~~~~~~~~~-------~~-~~--~--~l~~L~~lL~~~~ 340 (530)
+. ..+++.|...++ ++.... ...+.-.+. +.......... +. +. . .-+.+..-+ .
T Consensus 100 ~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~- 174 (339)
T PF12074_consen 100 FA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A- 174 (339)
T ss_pred HH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C-
Confidence 22 246666666663 322221 111222222 11111100000 00 00 0 011111111 1
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCC
Q 009622 341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 401 (530)
+++-....+.++..+..+.......-....+-..++.++-+. .+.+|+.|..++..+....
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 233333444444444433222111111223556778887777 7999999999999998864
No 362
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=58.30 E-value=40 Score=27.72 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009622 131 PQLQFEAAWALTNIASGT-SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l 209 (530)
+.++.+.+.++..++... ++.. ...++.+++.+.+ ++......+.+|..+..+-..++....
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~----------- 64 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSL----------- 64 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHS-----------
T ss_pred hhHHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhh-----------
Confidence 356677777777777632 2222 2456777887766 466666677777666432211000000
Q ss_pred hcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009622 210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (530)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (530)
...-+...-..+.. ....++..+...+.... .++...++.++......-+ ...+...+
T Consensus 65 -----~~~r~~~l~~~l~~-----------~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~ 126 (148)
T PF08389_consen 65 -----SQERRRELKDALRS-----------NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSN 126 (148)
T ss_dssp -----HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSS
T ss_pred -----hHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHH
Confidence 00001111111110 11333444444444322 6777888888887766433 34566677
Q ss_pred cHHHHHHhhCCCCchhHHHHHHHH
Q 009622 286 VFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 286 ~i~~L~~lL~~~~~~~~~~a~~~L 309 (530)
+++.+.+++.+++ ++..|+.+|
T Consensus 127 ~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 127 LLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHcCCHH--HHHHHHHhC
Confidence 8888988885444 577777664
No 363
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.63 E-value=5.5e+02 Score=33.40 Aligned_cols=314 Identities=13% Similarity=0.080 Sum_probs=145.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC------h--hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009622 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------S--EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~------~--~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~ 187 (530)
-.++.|+..+...+ +.+...+..++..+.... + ..+..+ -.++++.+.++..++...-+...+-.|..+.
T Consensus 984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi-~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPM-FEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccch-HHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 45778888888776 677666666665544311 0 011111 1244555666665555555555555565555
Q ss_pred CCCchhhhhHh--hcCChHHHHHhhcCC----C--chhHHHHHHHHhhhhccCC---CCCChhhhhchHHHHHHhhcCCC
Q 009622 188 GDSPRCRDLVL--SQGGLVPLLAQLNGQ----P--KLSMLRNATWTLSNFCRGK---PQPPFDQVSPALPALAHLIHSND 256 (530)
Q Consensus 188 ~~~~~~~~~i~--~~~~i~~Ll~ll~~~----~--~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~l~~L~~ll~~~d 256 (530)
.+.+ ...+. ...++..++..+... + ........+.-+...+... ..........++..++.-+.+++
T Consensus 1062 ~~~~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN 1139 (3550)
T KOG0889|consen 1062 ESMP--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPN 1139 (3550)
T ss_pred hhch--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc
Confidence 5544 11111 122444444444211 1 1122222222222222222 22222344667777888888899
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh---------CCCCchhHHHHHHHHhHhhcCCchh---hHHHh
Q 009622 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL---------MHPSPSVLIPALRTVGNIVTGDDMQ---TQCVI 324 (530)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL---------~~~~~~~~~~a~~~L~nl~~~~~~~---~~~~~ 324 (530)
..|++.+..+|.+++......+..+ +.++.+++ ....-..+.-.+.++..++.-.+.. ...+.
T Consensus 1140 ~~VR~~~~~~L~~i~~~s~~~v~~L-----~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~ 1214 (3550)
T KOG0889|consen 1140 SDVREFSQKLLRLISELSGKSVVKL-----LEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELY 1214 (3550)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHH-----HHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHH
Confidence 9999999999888875542111111 22222222 1112222222223332222222111 00000
Q ss_pred -------------hcCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHH--HHhCcHHHHHHHHhcCchhH
Q 009622 325 -------------EYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAV--IEANIIGPLVALLENAEFDI 386 (530)
Q Consensus 325 -------------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l--~~~~~i~~L~~ll~~~~~~v 386 (530)
+....- +.+...... ...+|..+..+++......+-..... ...+++..+...+....+++
T Consensus 1215 ~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei 1293 (3550)
T KOG0889|consen 1215 RLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSEL 1293 (3550)
T ss_pred HHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHH
Confidence 000000 222222210 11235555555555544222211111 12467888888888888999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~ 442 (530)
...+..++.+.... ++..-+.+++.+ +.+|...|.+... .....+..+..++.
T Consensus 1294 ~~~~~~~l~~v~~~-~~~~~ke~lq~~-lrplL~~l~d~~~-lsv~~l~~ls~l~~ 1346 (3550)
T KOG0889|consen 1294 IEVALEGLRKVLAQ-DVKLPKELLQSH-LRPLLMNLSDHNN-LSVPGLEGLSRLLR 1346 (3550)
T ss_pred HHHHHHHHHhhhhc-cccccHHHHHhh-HHHHHHhhhHhhh-hhHHHHHHHHHHHH
Confidence 99999999888775 223333334433 3333333332222 33344555555443
No 364
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=57.45 E-value=53 Score=27.01 Aligned_cols=125 Identities=17% Similarity=0.249 Sum_probs=69.5
Q ss_pred HHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---------hHHHHHH----HH
Q 009622 218 MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---------NDKIQAV----IE 283 (530)
Q Consensus 218 ~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---------~~~~~~~----~~ 283 (530)
++...+.+++.++... |. .....++.++.++.++ +......+..|..+.+.- ..+...+ ..
T Consensus 4 i~~kl~~~l~~i~~~~~P~----~Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQ----QWPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChh----hCchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4455566666666543 22 1234666666666653 444444444444443110 1111111 11
Q ss_pred --hCcHHHHHHhhCCCC----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009622 284 --AGVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 284 --~~~i~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
..+++.+.+.+.... ..+...++.++.....-- ....+.+.++++.+..++.++ .++..|+.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 134445555554433 678889999999988733 334566778999999999544 5577777664
No 365
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=57.16 E-value=30 Score=33.52 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=63.4
Q ss_pred CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc-CCCHHHHHHHHHHHH
Q 009622 413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKLLE 491 (530)
Q Consensus 413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~v~~~a~~il~ 491 (530)
.+++.|..-|+..|+.|+..++..+..+...+.+. |+..+....+...|..|.. +..+.|.++...++.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~----------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~ 114 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR----------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVK 114 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH----------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 46888888899999999999999988888766442 6777777788888888877 888999999999999
Q ss_pred HhCCCCCCC
Q 009622 492 TYWLDDEDE 500 (530)
Q Consensus 492 ~~~~~~~~~ 500 (530)
+|-++..+|
T Consensus 115 eWsee~K~D 123 (462)
T KOG2199|consen 115 EWSEEFKKD 123 (462)
T ss_pred HHHHHhccC
Confidence 987744444
No 366
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.07 E-value=2.7e+02 Score=29.62 Aligned_cols=313 Identities=14% Similarity=0.087 Sum_probs=141.5
Q ss_pred HHHHHhh-CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009622 162 PIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (530)
Q Consensus 162 ~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 240 (530)
+.+++-| .+.++.-|..|=.+|..++. +|++-. ...-++.....+--.--|..+|..+.......+...
T Consensus 8 e~lCk~LY~s~D~~~R~~AE~~L~e~s~-specls---------kCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~q 77 (1082)
T KOG1410|consen 8 ESLCKDLYESTDPTARHRAEKALAELSE-SPECLS---------KCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQ 77 (1082)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHHHHH---------HHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHH
Confidence 4455544 34667777777777777753 333322 222223233333334445555555555543333333
Q ss_pred hhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009622 241 VSPALPALAHLIHSND----DEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~ 313 (530)
.-.+-..++..+.+.. +-+....+..++.++.. +....+... .+.+..+.+.++.++.+...-++.+|..+.
T Consensus 78 rldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~F-Rd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 78 RLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVF-RDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchh-hhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 3344445555555433 33444445555555422 111112122 256777888888777666666677776665
Q ss_pred cCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchh----HHH
Q 009622 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFD----IKK 388 (530)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~----v~~ 388 (530)
..-... .......--..+..-+.+..-.++-.-||..|......+ ...-.+.|++..++.+-. .-+.+ .-.
T Consensus 157 qemN~~-~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~n---lnd~~q~~L~~~vL~L~l~Cl~FDfiGss~D 232 (1082)
T KOG1410|consen 157 QEMNQA-DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLN---LNDRAQLGLLMQVLKLNLNCLNFDFIGSSTD 232 (1082)
T ss_pred HHhhCC-CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccC---cccHhHhhHHHHHHHHHhhhccccccccccc
Confidence 311000 000000000111111221111233334444444333110 000001122222222110 00000 000
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccH
Q 009622 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGL 468 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (530)
+...-+++.-. ....+..+.+...+..+.++..+-.+.....++.+|..+...-...-+. ..-..|..-+. .|..
T Consensus 233 Essed~ctVQI--PTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~--aeRa~yl~~Lv-~Gvk 307 (1082)
T KOG1410|consen 233 ESSEDLCTVQI--PTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNG--AERAKYLQHLV-EGVK 307 (1082)
T ss_pred cccccccceec--CcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHH-HHHH
Confidence 01111111111 2234445556667888899999888888888999888887654432210 01112333333 4555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622 469 EKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 469 ~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
..|++=+.-.+++-|+.-..++-++-
T Consensus 308 ~il~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 308 RILENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred HHHhCCcCCCCcchHHHHHHHHHHHH
Confidence 55665566677777777777777653
No 367
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=56.79 E-value=22 Score=20.05 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHh
Q 009622 343 SIKKEACWTVSNIT 356 (530)
Q Consensus 343 ~v~~~a~~~L~nl~ 356 (530)
.+|..|+++|+++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 58999999999983
No 368
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.19 E-value=1.3e+02 Score=29.57 Aligned_cols=131 Identities=11% Similarity=0.147 Sum_probs=86.8
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHH
Q 009622 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQA 365 (530)
Q Consensus 287 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~ 365 (530)
+..|+.-+++.+..++..|+..+-.+....+.... .--..+++.+..+..+. +..+|.....++-.+... .++....
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhcc
Confidence 56678888999999999999999888765443321 11235677778888877 888999888888776542 2222111
Q ss_pred HHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009622 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 422 (530)
Q Consensus 366 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 422 (530)
++ .=+++.+...|.+-.+.+|.-+...|.-++....+....+... .++.+.+++
T Consensus 138 ~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i 191 (393)
T KOG2149|consen 138 MV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVI 191 (393)
T ss_pred hH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHH
Confidence 11 1234555556666789999999999999988765555554433 444444444
No 369
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=55.91 E-value=2.9e+02 Score=29.76 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009622 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~ 148 (530)
+|.+.-..+.+.+...|- -.+..++..-.++.|.+++.. .++|.+|+.|+..+....
T Consensus 206 npgl~~~cLdc~g~fVSW---IdInLIaNd~f~nLLy~fl~i---eelR~aac~cilaiVsKk 262 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSW---IDINLIANDYFLNLLYKFLNI---EELRIAACNCILAIVSKK 262 (980)
T ss_pred CchHHHHHHHHHHHHhhh---hhhhhhhchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhcC
Confidence 788888888888888764 234455567788889998873 689999999999998844
No 370
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=55.54 E-value=3e+02 Score=29.75 Aligned_cols=153 Identities=10% Similarity=0.076 Sum_probs=77.9
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009622 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 300 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 379 (530)
.....+++|+-.+....-.....+-...-+-.+...+... .+.++..++.+++.+|.-..
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr-~pnmm~dvvkllsalciV~e------------------- 266 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPR-EPNMMTDVVKLLSALCIVGE------------------- 266 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCcc-CccHHHHHHHHHHHHheeeh-------------------
Confidence 3455667777666542221111111223355556666655 67777777777777765221
Q ss_pred hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhh
Q 009622 380 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVF 458 (530)
Q Consensus 380 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~ 458 (530)
.......+.+|..++.....+. ..+|++.|... +..+...|+..|..+........-. -.+
T Consensus 267 ----e~~~ekvl~aiT~~ae~~~veR---------F~piv~gl~~~e~~~l~vacmq~INal~t~p~dldfR-----lhl 328 (1102)
T KOG1924|consen 267 ----ENGLEKVLEAITTIAEAKPVER---------FRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDFR-----LHL 328 (1102)
T ss_pred ----hhHHHHHHHHHHHHHhhcchhh---------hhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhHH-----HHH
Confidence 2334444555555555322221 34555666544 4445555555444443332222110 114
Q ss_pred HHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009622 459 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491 (530)
Q Consensus 459 ~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~ 491 (530)
+..+..+|.-+.|.++....|++ ...+.++++
T Consensus 329 R~E~mr~gL~~~l~~l~~i~n~~-ldvqlkvfd 360 (1102)
T KOG1924|consen 329 RSEFMRDGLHKYLPDLTEINNDI-LDVQLKVFD 360 (1102)
T ss_pred HHHHHHHhHHHHHHHhhhhccHH-HHHHHHHHh
Confidence 56677788888888887664444 344444444
No 371
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.53 E-value=3.6e+02 Score=30.44 Aligned_cols=232 Identities=18% Similarity=0.172 Sum_probs=122.0
Q ss_pred hcCCHHHHHH-hhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc--C
Q 009622 71 KLENLPVMVA-GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS--G 147 (530)
Q Consensus 71 ~~~~l~~l~~-~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~--~ 147 (530)
+++++.-+-. +|++++.+.+...+..+.++.+.. ..+-...-+.--+|.++.-+..-. ..+|...+.+|-.-.. .
T Consensus 464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvn 541 (2799)
T KOG1788|consen 464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVN 541 (2799)
T ss_pred chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhc
Confidence 4444444433 456788888888888888887652 222223334556888887776544 5666666555433221 0
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-----CchhHHHH
Q 009622 148 TSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-----PKLSMLRN 221 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-----~~~~~~~~ 221 (530)
.-.++. +-.|+-+|+.+ +..+....+.....+...+..+++.+.+-|.+..|...++++ ++.- .
T Consensus 542 cvPeqE-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy---s 611 (2799)
T KOG1788|consen 542 CVPEQE-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY---S 611 (2799)
T ss_pred cCcHHH-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh---h
Confidence 111111 22466677664 345666666666777777777888888889888887777431 1110 0
Q ss_pred HHHHhhhhccCCC-CCChh---hhhchHHHHHHhhcCC---Chh--HH---HHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 009622 222 ATWTLSNFCRGKP-QPPFD---QVSPALPALAHLIHSN---DDE--VL---TDACWALSYLSDGTNDKIQAVIEAGVFPR 289 (530)
Q Consensus 222 a~~~L~~L~~~~~-~~~~~---~~~~~l~~L~~ll~~~---d~~--v~---~~a~~~l~~l~~~~~~~~~~~~~~~~i~~ 289 (530)
..+.....++ ...+. .....+-.--+++++. ++- +. .-.-.+|..+..+..++...+.+..++..
T Consensus 612 ---gvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvkl 688 (2799)
T KOG1788|consen 612 ---GVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKL 688 (2799)
T ss_pred ---hHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceE
Confidence 0111111111 10000 0011111111122221 110 00 01122455555666666666777777777
Q ss_pred HHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 290 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 319 (530)
+++++-+ ...|...++++..+....+.+
T Consensus 689 ilpflin--dehRSslLrivscLitvdpkq 716 (2799)
T KOG1788|consen 689 ILPFLIN--DEHRSSLLRIVSCLITVDPKQ 716 (2799)
T ss_pred EEEeeec--hHHHHHHHHHHHHHhccCccc
Confidence 7777743 346777778887777666653
No 372
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=54.31 E-value=1e+02 Score=33.64 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=95.4
Q ss_pred CcHHHHHHcCCHHHHHHhhcCCC-C------HHHHHHHHHHHHHHhcCChhhHHHHHhC--------CChHHHHHhhCC-
Q 009622 107 PPIEEVIRSGVVPRFVEFLLRED-Y------PQLQFEAAWALTNIASGTSEHTKVVIDH--------GAVPIFVKLLYS- 170 (530)
Q Consensus 107 ~~~~~~~~~g~v~~Lv~ll~~~~-~------~~i~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~lL~~- 170 (530)
+..+.+...+.+..++++...+. + .++...|+..|.-+.. -++....++.+ .++..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 34556667777888888776432 1 2455556666666555 35555554421 244444444322
Q ss_pred ---CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCCh--HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchH
Q 009622 171 ---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL--VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245 (530)
Q Consensus 171 ---~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i--~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l 245 (530)
.+++++..|+.+|-|.....|.+|...+..-.- ..=-..+...+......+.+.-.++-.+. ...+
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------CccH
Confidence 478999999999999988887776553321000 00000111222333445555555555554 4567
Q ss_pred HHHHHhhcCCC-----hhHHHHHHHHHHHhccCChHHHHHHHH
Q 009622 246 PALAHLIHSND-----DEVLTDACWALSYLSDGTNDKIQAVIE 283 (530)
Q Consensus 246 ~~L~~ll~~~d-----~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (530)
..|+++|+... ..++..||.+|.-|+..+. ..+.+.+
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t-VrQIltK 783 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDT-VRQILTK 783 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH-HHHHHHh
Confidence 77888887432 4578889999988887654 3344444
No 373
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.02 E-value=2e+02 Score=28.25 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=76.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh
Q 009622 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324 (530)
Q Consensus 245 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 324 (530)
+.-|+.-+.+.+..++.+++..|..+....+.... .-...+++.+..++.+.+..+|......+-.+............
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 44566677888999999999998877655443333 12235677777888888888888888887775543222112222
Q ss_pred hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009622 325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 325 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
-.=+.+.+...+.+. .+.+|..+...+.-++...
T Consensus 139 ~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 223456666777777 8999999999999888744
No 374
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=53.37 E-value=12 Score=20.70 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009622 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
||..|+|+|+++.. +. .++.|++.++
T Consensus 1 VR~~Aa~aLg~igd--~~---------ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD--PR---------AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S--HH---------HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--HH---------HHHHHHHHhc
Confidence 68899999999854 33 4556665554
No 375
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=53.17 E-value=1.4e+02 Score=30.29 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009622 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 166 (530)
...+..|+.+|..+++.-..+....+.+ +.|+.+|++.. ..-|..|+.++...+.........-.-..+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 3467789999999887743444444322 26888998877 566677777887777743222111000123466777
Q ss_pred hhCC
Q 009622 167 LLYS 170 (530)
Q Consensus 167 lL~~ 170 (530)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 7764
No 376
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=53.11 E-value=1.2e+02 Score=25.36 Aligned_cols=123 Identities=13% Similarity=0.115 Sum_probs=79.2
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCC--CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHH
Q 009622 148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGD--SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~--~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~ 224 (530)
+++.-+.+.+..++..+.+++.. ....++.+.+.+++-+... ++..-..+...+.+..++..--+-.++++...-+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 35566777788889999999977 5677888888877766532 22233455667777777776545568888888888
Q ss_pred HhhhhccCCCCCChh----hhhchHH---HHHHhhcCCChhHHHHHHHHHHHh
Q 009622 225 TLSNFCRGKPQPPFD----QVSPALP---ALAHLIHSNDDEVLTDACWALSYL 270 (530)
Q Consensus 225 ~L~~L~~~~~~~~~~----~~~~~l~---~L~~ll~~~d~~v~~~a~~~l~~l 270 (530)
.|-.|+..-...... ...+-.| .-+++..++|.-++..+-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 888887654222211 1122334 445666777877776665554443
No 377
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=52.54 E-value=58 Score=26.20 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc---CCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhH
Q 009622 383 EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL---VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT 459 (530)
Q Consensus 383 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL---~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~ 459 (530)
+...-...+.-|+..+... ..+.. ++..|..-| +.++..++..+|..|..|+..|+.. +.
T Consensus 16 ~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~----------~~ 78 (125)
T PF01417_consen 16 PWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER----------FV 78 (125)
T ss_dssp SSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH----------HH
T ss_pred CCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH----------HH
Confidence 3445555666777777643 33333 355666666 5677789999999999999988653 23
Q ss_pred HHh-hhhccHHHHHHHhc------CCCHHHHHHHHHHHHHhCC
Q 009622 460 QMI-DDAEGLEKIESLQT------HDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 460 ~~~-~~~~~~~~l~~l~~------~~~~~v~~~a~~il~~~~~ 495 (530)
..+ .....+..+..+.. .....|+++|..+++-..+
T Consensus 79 ~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 79 DELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp HHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 333 22333444444433 1123499999999987655
No 378
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=52.03 E-value=91 Score=24.33 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=54.4
Q ss_pred CchHHHHHhhcC---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCC
Q 009622 327 QALPCLLNLLSG---NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 327 ~~l~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 401 (530)
|++..+-..+.+ ..+...|+.+...++.+..-....+. .+.|.++..|.+. .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 555666666665 32567888999999888763333332 3556677766654 4589999999999998877
Q ss_pred CHHHHHHHHH
Q 009622 402 THEQIKFLVI 411 (530)
Q Consensus 402 ~~~~~~~l~~ 411 (530)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 7666666554
No 379
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=51.66 E-value=3.4e+02 Score=29.31 Aligned_cols=149 Identities=11% Similarity=0.109 Sum_probs=90.0
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHH--HH----------------------HH-------cCCHHH
Q 009622 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIE--EV----------------------IR-------SGVVPR 120 (530)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~--~~----------------------~~-------~g~v~~ 120 (530)
+..+..|+....+..-....+|+.+|..++-+.--|.+. .+ .+ ..+|..
T Consensus 229 lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfiev 308 (988)
T KOG2038|consen 229 LKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEV 308 (988)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHHH
Confidence 346677777777665555666777766555432112111 00 00 123334
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc
Q 009622 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (530)
Q Consensus 121 Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (530)
|..+...+- +.++..++..+..+..+.|+.-..+ +..|+.-|..+...+...|...|.+|....|..+..+
T Consensus 309 Le~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv--- 379 (988)
T KOG2038|consen 309 LEELSKDPL-EEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV--- 379 (988)
T ss_pred HHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh---
Confidence 444444444 7889999999999888777765443 5677888888888899999999999988888765543
Q ss_pred CChHHHHHhhc-CCCchhHHHHHHHHhhhhcc
Q 009622 201 GGLVPLLAQLN-GQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 201 ~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+.+++- .+.+.....+++-+|..+..
T Consensus 380 --i~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 380 --IDEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred --HHHHHHHHcccCccccceeehhhhhhhhHh
Confidence 334444442 22244444455555555443
No 380
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.81 E-value=3.8e+02 Score=29.60 Aligned_cols=39 Identities=26% Similarity=0.136 Sum_probs=31.0
Q ss_pred hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
.+.+.+...++.++.++..+.++.++.++...|+.+.+.
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 344556678999999997777888999888888888776
No 381
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=50.75 E-value=48 Score=27.53 Aligned_cols=46 Identities=26% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
-+..|...|+.+..|. =+..|+++|.+.+..+...|+.+|.+...-
T Consensus 79 s~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp -HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred CHHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 3556666777665542 268899999989999999999999987764
No 382
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=50.26 E-value=2.4e+02 Score=27.07 Aligned_cols=157 Identities=10% Similarity=0.107 Sum_probs=91.0
Q ss_pred chHHHHHHhhcCC----ChhHHHHHHHHHHHhccCChHHHHHHHHh-----------CcHHHHHHhhC------CCCchh
Q 009622 243 PALPALAHLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEA-----------GVFPRLAEFLM------HPSPSV 301 (530)
Q Consensus 243 ~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----------~~i~~L~~lL~------~~~~~~ 301 (530)
.++..|+.++-.. .-+++..++.++.....++++....+++. .....|+..|- +.++--
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 3444444443322 35677888888877776665554445442 11112444443 224434
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhc------------CchHHHHHhhcC----CCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009622 302 LIPALRTVGNIVTGDDMQTQCVIEY------------QALPCLLNLLSG----NYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~~~~~------------~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
..-|+.++..+...+++....++.- ..++.+..+|.. ..++.++..-...|+-...+++..+..
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 5568888888888777766555421 245566666654 336777777777788877888998888
Q ss_pred HHHhC-cHHHHHHHHhcC---chhHHHHHHHHHHHhhc
Q 009622 366 VIEAN-IIGPLVALLENA---EFDIKKEAAWAISNATS 399 (530)
Q Consensus 366 l~~~~-~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~ 399 (530)
++..+ .++.|+...... +.-|+.-++..|+-+..
T Consensus 194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 88754 788888875332 45677666666665544
No 383
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.08 E-value=1e+02 Score=31.25 Aligned_cols=71 Identities=8% Similarity=-0.005 Sum_probs=57.5
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHH
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENIL 441 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~v~~~al~~l~~ll 441 (530)
++..|.+.+.+.++.++..|+..|-.++.++...+...+.+.+++..++.+.+.. +.+|+..++..|...-
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 4566777788888899999999999999988877777888999999999988755 6678888877766543
No 384
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.30 E-value=61 Score=31.49 Aligned_cols=72 Identities=7% Similarity=0.040 Sum_probs=59.8
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHh
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~ 442 (530)
++..+.+-|.+.++.|...|+..+..++.++....+..+.+..+...|..++. ...++|....-..+.....
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 56788888999999999999999999999888888888888899888988888 6677777766666555544
No 385
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=49.28 E-value=12 Score=33.29 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=36.8
Q ss_pred hHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcccc
Q 009622 10 DSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ 54 (530)
Q Consensus 10 ~~~~~~~k~~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~ 54 (530)
..|...||+..+.-|.+.||.+...++.|.+|-+...+.|+....
T Consensus 24 hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~d 68 (325)
T KOG3132|consen 24 HPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAVD 68 (325)
T ss_pred CchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhccc
Confidence 478999999656677787787779999999999999998886543
No 386
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.66 E-value=71 Score=35.02 Aligned_cols=96 Identities=18% Similarity=0.133 Sum_probs=68.6
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhc----cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009622 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLS----DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~----~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~ 315 (530)
....++....++|.+.+..++..++.++.... ...+.... ++. -..+.++..+...++-+...|+.++.+++..
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 34566667778888889999999988887643 33332222 333 5678899999999999999999999999987
Q ss_pred CchhhHHHhhcCchHHHHHhhc
Q 009622 316 DDMQTQCVIEYQALPCLLNLLS 337 (530)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~lL~ 337 (530)
+......-+-..++|.+-.++.
T Consensus 878 sgDFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 878 SGDFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 7655444444456666665554
No 387
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=48.21 E-value=3.2e+02 Score=27.98 Aligned_cols=238 Identities=17% Similarity=0.189 Sum_probs=123.0
Q ss_pred hhchHHHHHHhhc-CCChhHHHHHHHHHHHhccC----C------hHHHHHHHHhCcHHHHHHhhCC----CCchhHHHH
Q 009622 241 VSPALPALAHLIH-SNDDEVLTDACWALSYLSDG----T------NDKIQAVIEAGVFPRLAEFLMH----PSPSVLIPA 305 (530)
Q Consensus 241 ~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~----~------~~~~~~~~~~~~i~~L~~lL~~----~~~~~~~~a 305 (530)
...++..+.+++. +..-.++.+++|.|+++--. . +....++-+..++...+.++-. +.+.+....
T Consensus 95 lnevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~l 174 (589)
T PF11229_consen 95 LNEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSL 174 (589)
T ss_pred HHHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHH
Confidence 3556666777665 34677889999999886311 0 1112223333455555555432 222222222
Q ss_pred HHH-HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622 306 LRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 306 ~~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
+.+ +..++...+... .-..+.-..|-.+++.+...+++..+..+...=+..+ .....++..=+.|.++.-++ .
T Consensus 175 vkvvl~~ia~vgeS~q--yPPVNWaalLsPLMRlnfGeEvq~lCLeiAvtQaqSS-qsAa~fLg~WlsPpli~sLs---~ 248 (589)
T PF11229_consen 175 VKVVLKPIATVGESYQ--YPPVNWAALLSPLMRLNFGEEVQQLCLEIAVTQAQSS-QSAAMFLGSWLSPPLIHSLS---V 248 (589)
T ss_pred HHHHHHHhhhcCCCCC--CCCccHHHHhhHHHhccccHHHHHHHHHHHHHhcccc-ccHHHHHHhhcCcchhhhhh---H
Confidence 221 222222111110 0011223334444444436677777665433322222 22334444445666665553 4
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhh
Q 009622 385 DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD 464 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~ 464 (530)
..+..-+..+.-...+...++++.+++.-.+..+-....-.++++...++..|..-++.....+. ....+
T Consensus 249 ~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h--------~Ws~L-- 318 (589)
T PF11229_consen 249 NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQH--------CWSLL-- 318 (589)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhH--------HHHHH--
Confidence 67777778888888877778888777765555555444456778888888888877765543221 23333
Q ss_pred hccHHHHHHHh----cCCCHHHHHHHHHHHHHhC
Q 009622 465 AEGLEKIESLQ----THDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 465 ~~~~~~l~~l~----~~~~~~v~~~a~~il~~~~ 494 (530)
+...++|-++. ...+-++|....+.|.+.-
T Consensus 319 c~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMt 352 (589)
T PF11229_consen 319 CETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMT 352 (589)
T ss_pred HHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcC
Confidence 22344555543 3344445555555555443
No 388
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.12 E-value=3.9e+02 Score=28.92 Aligned_cols=264 Identities=15% Similarity=0.193 Sum_probs=134.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh
Q 009622 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD 239 (530)
Q Consensus 160 ~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 239 (530)
+|+.|-.+...+-+.++..++.++.++....|+-.. ..+..+++.+ .+++..+...|...|.+|....|+....
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 455555555556788999999999999988886433 3566778888 7777888889999999998888877655
Q ss_pred hhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhc--cCChHHHHHHHHh--CcHHHHHHhhCCCCc--------------
Q 009622 240 QVSPALPALAHLIHSN--DDEVLTDACWALSYLS--DGTNDKIQAVIEA--GVFPRLAEFLMHPSP-------------- 299 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~--~~~~~~~~~~~~~--~~i~~L~~lL~~~~~-------------- 299 (530)
+...+ ..++-.+ +.....+++..|..+. ....+....+++- -++..++.-....+.
T Consensus 379 vi~EI----er~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k 454 (988)
T KOG2038|consen 379 VIDEI----ERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNK 454 (988)
T ss_pred hHHHH----HHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhcccccc
Confidence 44333 3333322 2333444555554432 2222222222210 111111111111000
Q ss_pred -----h-----hHHHHHHHHhHhhcCCchh------hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009622 300 -----S-----VLIPALRTVGNIVTGDDMQ------TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 300 -----~-----~~~~a~~~L~nl~~~~~~~------~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
. ....--++|+.+.+|-... ....++ .-++.|..+.++. +..+-..|+..|-.+...+.
T Consensus 455 ~~k~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~-~~~~tLFkl~Hss-NFNTsVQaLmLlfQvs~~~~--- 529 (988)
T KOG2038|consen 455 KDKKEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKLE-EQMKTLFKLTHSS-NFNTSVQALMLLFQVSKKND--- 529 (988)
T ss_pred cchhhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHHH-HHhHHHHHHHhhc-ccchhHHHHHHHHHHHHhhh---
Confidence 0 1111223455554432211 011111 2366777777777 77777777777777754321
Q ss_pred HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC-----CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009622 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG-----GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE 438 (530)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~ 438 (530)
++...+...|.+-|-.+. -+-......+.||... .+....+ -.+..+++.-.+..|....-++..+.
T Consensus 530 --~vSDRyY~aLY~kLLdP~-l~~sSKq~m~LnLlykslK~D~ni~RV~-----AFvKRlLQVa~~q~P~~i~G~l~Lls 601 (988)
T KOG2038|consen 530 --YVSDRYYRALYRKLLDPR-LMNSSKQAMFLNLLYKSLKEDINIQRVR-----AFVKRLLQVAVQQQPPFICGILFLLS 601 (988)
T ss_pred --hhHHHHHHHHHHHhcCcc-cCchHHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHHhcCCchhHhHHHHHH
Confidence 222234445555443331 0111111222333321 1111111 13455555555667777777777777
Q ss_pred HHHhhhhh
Q 009622 439 NILKVGEA 446 (530)
Q Consensus 439 ~ll~~~~~ 446 (530)
.+++.-+.
T Consensus 602 el~Karp~ 609 (988)
T KOG2038|consen 602 ELLKARPT 609 (988)
T ss_pred HHHHhcch
Confidence 77765544
No 389
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=47.53 E-value=57 Score=29.04 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=54.0
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009622 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (530)
Q Consensus 285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (530)
...+.+...+.+++.-.+..++-++...... ... ..++..+...+.++ +..+++...|+|..++..+++...
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~-----~~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDF-----DELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHH-----HHHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCH-----HHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4567788888888888888887666555443 111 12344555566677 889999999999999999888877
Q ss_pred HHHHh
Q 009622 365 AVIEA 369 (530)
Q Consensus 365 ~l~~~ 369 (530)
.++..
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 390
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=47.19 E-value=99 Score=22.98 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=44.0
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh----CCCCHHHHHHHHHHHH
Q 009622 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL----YSPSDDVREQAVWALG 184 (530)
Q Consensus 113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL----~~~~~~~~~~a~~~L~ 184 (530)
.+..++.++..++.+..+.++|...+.|+..+.....+ -+.+| =+.++.++ .+++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~----~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE----NIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH----HHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34556788888876655589999999999999984332 22345 34444444 3456777777766653
No 391
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=47.09 E-value=63 Score=22.97 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=44.3
Q ss_pred HHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009622 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (530)
Q Consensus 221 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 288 (530)
+.+|+.+.|--. |.........+...+..-+..-++....+++|+++.+-..+.+.++.+.+..++.
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 345555555433 3333344455666666666666788899999999999888887777776655544
No 392
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=46.92 E-value=22 Score=27.65 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009622 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~ 431 (530)
+.+..+..++. .|+....+++.|++..|+.+|..++.++..
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 34556666666 568889999999999999999999887654
No 393
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=45.44 E-value=27 Score=29.07 Aligned_cols=125 Identities=13% Similarity=0.142 Sum_probs=82.7
Q ss_pred CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHH-HhcCchhHHHHHHH
Q 009622 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVAL-LENAEFDIKKEAAW 392 (530)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~ 392 (530)
++...+.+++.+++..+..++.......++.....+++-+.. .++..+-+++..+.+..++.. ++-.+.++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 345566778889999999999885477888888888777765 344555566667777776664 23346788888888
Q ss_pred HHHHhhcCCCHHHHHHHHH--cCChHHH---HhccCCCChHHHHHHHHHHHHH
Q 009622 393 AISNATSGGTHEQIKFLVI--QGCIKPL---CDLLVCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~--~~~l~~L---~~lL~~~~~~v~~~al~~l~~l 440 (530)
.|..++..-+.+....+.. .+-.|.+ +.+...+|+-++..+-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888887655555555443 2334433 4556677777766555444443
No 394
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.14 E-value=37 Score=32.52 Aligned_cols=63 Identities=8% Similarity=0.028 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHhhhCCCchhhhhHhh
Q 009622 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (530)
Q Consensus 137 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 199 (530)
..+.+++++...++..+.+.+.|+++.++.-. ++.+|-+++..+.++.++..++...++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 56789999999999999999999999887754 4477999999999999999888877766554
No 395
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=41.05 E-value=98 Score=27.52 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009622 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 422 (530)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 422 (530)
.+-..++..|..++.++..+...+.+ -++.++..+.......-..+..++..+... +++.+..+.+. .+..+++++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~~~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQLQIGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCCCH-TTHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHhhccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHHH
Confidence 56678899999999998877766665 233333333332222223566677777775 45666665443 488888888
Q ss_pred CCCChHHHHHHHHHHHHHHhhh
Q 009622 423 VCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 423 ~~~~~~v~~~al~~l~~ll~~~ 444 (530)
...... ...+..|..++..+
T Consensus 152 ~~~gr~--~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 152 RKHGRQ--PRYLDFLSSLCVCN 171 (207)
T ss_dssp ----------------------
T ss_pred HHcCCC--hHHHHHHhhhcccC
Confidence 763322 23455666665543
No 396
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=40.65 E-value=2.8e+02 Score=25.13 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=73.8
Q ss_pred chhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC---------C---------hhHHHHHHHHHHHhccCChH
Q 009622 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---------D---------DEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 215 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~---------d---------~~v~~~a~~~l~~l~~~~~~ 276 (530)
+......+|..+..|.............++++.+...|..- + ..+...-...|+.++.....
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 34555566666666666654444444455555555444321 1 12223344556777655543
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 277 ~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
.+.+-+.+++..+..++...+. ..-...++.++-.+.+.... ..|.+.|..+ +..+|..|...|..+.
T Consensus 157 -l~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~-s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 -LKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSG-SESIRLYATKHLRVLL 224 (226)
T ss_pred -HHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcC-CHHHHHHHHHHHHHHh
Confidence 5667788999999888877643 22222345555333332222 2355677777 8889999888887664
No 397
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.04 E-value=3.1e+02 Score=32.24 Aligned_cols=195 Identities=15% Similarity=0.091 Sum_probs=102.8
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHH-
Q 009622 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT-KVVIDHGAVPIFVKLLYS----PSDDVREQAVWALG- 184 (530)
Q Consensus 111 ~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~- 184 (530)
..++.|....+..-+++.+ +.++..|.|++...... -+.. ......-.+-.++.+.+. +++++-..+.-.++
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D-~~mr~la~~~lqi~~dH-Le~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~ 1511 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDD-PSMRKLAYWVLQIFLDH-LENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAF 1511 (1758)
T ss_pred hhhhcccHHHHhhhhccCC-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHH
Confidence 6778898888888888888 99999998888766552 2221 222211223333333322 22222221111111
Q ss_pred --hhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChh---H
Q 009622 185 --NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE---V 259 (530)
Q Consensus 185 --nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~---v 259 (530)
+++.... .+.-.++..++.. .. ...-..+|.+-.++.+...+ .
T Consensus 1512 ~~~ill~Ps--------~~ly~~In~~L~~--------------s~----------~vdlq~iP~F~~ffySs~~e~~t~ 1559 (1758)
T KOG1791|consen 1512 FSDILLVPS--------EGLYFPINGLLLS--------------SK----------IVDLQGIPIFHRFFYSSVFEHHTE 1559 (1758)
T ss_pred HHHHHcCCc--------cccchhHHHHHHh--------------hh----------hcccCCCccHHHHHHhccccccch
Confidence 1111110 1111222222200 01 11123345556666554332 4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhc
Q 009622 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337 (530)
Q Consensus 260 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 337 (530)
++..+..+......+++ .+.....+.+..++++..+. +...+.-.+.++++-+.........+-..|+...+..++.
T Consensus 1560 R~Wvl~LV~~glks~~D-~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~ 1638 (1758)
T KOG1791|consen 1560 REWVLELVSKGLKSCPD-YQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIP 1638 (1758)
T ss_pred hhhhHHHHHHHhcCchh-hhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhcc
Confidence 44455555554444443 45566667777777777663 3444556677777777655555555557899999999998
Q ss_pred CCC
Q 009622 338 GNY 340 (530)
Q Consensus 338 ~~~ 340 (530)
++.
T Consensus 1639 s~~ 1641 (1758)
T KOG1791|consen 1639 SSF 1641 (1758)
T ss_pred ccc
Confidence 874
No 398
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=39.03 E-value=1.3e+02 Score=29.07 Aligned_cols=65 Identities=26% Similarity=0.418 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhH
Q 009622 132 QLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLV 197 (530)
Q Consensus 132 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~---~~~~~~~~a~~~L~nl~~~~~~~~~~i 197 (530)
.++..|+.++..+.. .+.....++..+ ++.-|+.+++. -...++..|+.+|..|+.+...+.+.+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 455566666655554 566666777666 88999999976 346799999999999998776555543
No 399
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=38.28 E-value=52 Score=31.25 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=68.1
Q ss_pred hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-------------HHHHHHHHHcCChHHHHhccCC--------C--
Q 009622 369 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGT-------------HEQIKFLVIQGCIKPLCDLLVC--------P-- 425 (530)
Q Consensus 369 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-------------~~~~~~l~~~~~l~~L~~lL~~--------~-- 425 (530)
..++..+++-|...+...|..|+.+|..++.+.- ......+.+.|++++|..+|.. .
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~~ 138 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDDQ 138 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence 4567788888988899999999999999998661 2345566788999999988841 0
Q ss_pred ----------ChHHHHHHHHHHHHHHhhhhhhhhcCCC--CchhhHHHhhhhccHHHHHHHh
Q 009622 426 ----------DPRIVTVCLEGLENILKVGEAEKNLGNT--DVNVFTQMIDDAEGLEKIESLQ 475 (530)
Q Consensus 426 ----------~~~v~~~al~~l~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~ 475 (530)
+......++.+++.++............ ....+...+.+.+.+..|..+.
T Consensus 139 ~~~~~~~~~~~~~el~~~LTilY~~vev~r~~~~~~~~~~~~~~~~~~L~~p~ll~~L~~~i 200 (293)
T PF07923_consen 139 DSNLPAVSLADSTELRVLLTILYFMVEVARRDRDSPEWMAIVREFIMELEEPNLLVFLFKMI 200 (293)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHhcCCcHHHHHHHHH
Confidence 1235556777788777665443100000 1133444454455555555443
No 400
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=37.17 E-value=69 Score=25.52 Aligned_cols=68 Identities=25% Similarity=0.286 Sum_probs=47.1
Q ss_pred ChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhH-HHHHHHHhhhhccCC
Q 009622 160 AVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-LRNATWTLSNFCRGK 233 (530)
Q Consensus 160 ~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~-~~~a~~~L~~L~~~~ 233 (530)
++|.+...|. +..++.+-.+..+++.++...+ ..+. .+..+++.+........ .+.++.++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDE-----VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4688888888 6788999999999999986665 2222 45555555544433333 478888888888654
No 401
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=36.78 E-value=2.6e+02 Score=23.69 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=51.5
Q ss_pred HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH-hhcCCC-chhHHHHHHHHHHHHh
Q 009622 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN-LLSGNY-KKSIKKEACWTVSNIT 356 (530)
Q Consensus 279 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~~~~-~~~v~~~a~~~L~nl~ 356 (530)
..+++..+.+.+.+.+.+.+..+...+++++..+...-....+.-++ -+++.++. ++.++. ...-|..+..++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 34566678888888888888889999999999988533222111111 23444444 555542 2356777888888888
Q ss_pred cCC
Q 009622 357 AGN 359 (530)
Q Consensus 357 ~~~ 359 (530)
...
T Consensus 146 ~~p 148 (168)
T PF12783_consen 146 KDP 148 (168)
T ss_pred hCh
Confidence 653
No 402
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=36.64 E-value=5e+02 Score=26.89 Aligned_cols=140 Identities=11% Similarity=0.083 Sum_probs=82.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC----C---CchhHHHHHHHHhhhhccCCCC
Q 009622 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----Q---PKLSMLRNATWTLSNFCRGKPQ 235 (530)
Q Consensus 163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~----~---~~~~~~~~a~~~L~~L~~~~~~ 235 (530)
.+.+.+-+.++..+..|+..|.. |. .... .++.++.++.. + .+.....+++..++.|..++..
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T---Ds-GL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET---DS-GLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc---Cc-cHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34444444666666666665542 22 1211 35555555532 2 4677788888888889888655
Q ss_pred CChhhhhchHHHHHHhhcCC----------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHH
Q 009622 236 PPFDQVSPALPALAHLIHSN----------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLI 303 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~----------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~ 303 (530)
.-......++|.++.++-+. ...++.-++..+..++......... +...++..+.+.+.+. .+....
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 55566778888877765421 1335666777777777665444333 4446667777766654 344555
Q ss_pred HHHHHHhHhh
Q 009622 304 PALRTVGNIV 313 (530)
Q Consensus 304 ~a~~~L~nl~ 313 (530)
-++..|..+.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 5555555554
No 403
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.92 E-value=5.7e+02 Score=27.33 Aligned_cols=301 Identities=13% Similarity=0.095 Sum_probs=145.5
Q ss_pred CHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.++.+.+.|. +.|+..+..|=.+|+.+... .+ .+....-++..++.|--+..|..+|..+.++.. ..
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~l 73 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PL 73 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CC
Confidence 4566666665 68899999999999987432 22 234444455556657778888899998888543 11
Q ss_pred HHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHhhhCCCch--hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009622 153 KVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPR--CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~--~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L 226 (530)
.......+-.+++.++.... +-+...-+..++.|..-.-- .++...=.+.+..+.+.+ +..+.+-..-++..|
T Consensus 74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iL 152 (1082)
T KOG1410|consen 74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQIL 152 (1082)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHH
Confidence 11111233456667775533 33445555566666532211 111222233566677777 555555555566666
Q ss_pred hhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhCCCCchhHHH
Q 009622 227 SNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (530)
Q Consensus 227 ~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~ 304 (530)
..|...-.......-..-=..+..-++.+ =-++..-++..|.....-. .+..+ .|++..++++--. .-
T Consensus 153 sqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q----~~L~~~vL~L~l~------Cl 222 (1082)
T KOG1410|consen 153 SQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQ----LGLLMQVLKLNLN------CL 222 (1082)
T ss_pred HHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhH----hhHHHHHHHHHhh------hc
Confidence 66654321111000000000000001111 1233334444444433111 01111 1222222221000 00
Q ss_pred HHHHHhHhhcC----------CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-----CHHHHHHHHHh
Q 009622 305 ALRTVGNIVTG----------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-----NREQIQAVIEA 369 (530)
Q Consensus 305 a~~~L~nl~~~----------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~l~~~ 369 (530)
....+|..+.. ....+..+.+...+..+.++..+- .+..-+.|..+|..+++- +...+...+.
T Consensus 223 ~FDfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~sl-p~~~S~~alsclvqlASvRRsLFN~aeRa~yl~- 300 (1082)
T KOG1410|consen 223 NFDFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSL-PPELSELALSCLVQLASVRRSLFNGAERAKYLQ- 300 (1082)
T ss_pred cccccccccccccccccceecCcHHHHHhcCchHHHHHHHHhccC-CchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-
Confidence 00001111100 112344456777888999999888 888889999999999862 1122222221
Q ss_pred CcHHHHHHHHhcC----chhHHHHHHHHHHHhhc
Q 009622 370 NIIGPLVALLENA----EFDIKKEAAWAISNATS 399 (530)
Q Consensus 370 ~~i~~L~~ll~~~----~~~v~~~a~~aL~nl~~ 399 (530)
.++.-..+++.++ |+.--.+-|..|+.+-.
T Consensus 301 ~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlkt 334 (1082)
T KOG1410|consen 301 HLVEGVKRILENPQGLSDPANYHEFCRLLARLKT 334 (1082)
T ss_pred HHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHh
Confidence 2444555556554 45555555555555543
No 404
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=35.21 E-value=4e+02 Score=31.75 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=77.0
Q ss_pred HHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCc
Q 009622 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (530)
Q Consensus 249 ~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 328 (530)
-.++.+.++.++.-+......+-...+. .....++..|+..+.+++..-...|+.+|..++..++...... +..
T Consensus 441 ~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~ 514 (1426)
T PF14631_consen 441 QSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATF 514 (1426)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHH
Confidence 3456688888887777666666555433 2233577888888877777777899999999997554332111 223
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
+..++..+..= +..--+....+++.++....... .-+...+.-.+-+.+.+.+++.++..+.+...++
T Consensus 515 l~giLD~l~~L-s~~qiR~lf~il~~La~~~~~~~-s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 515 LKGILDYLDNL-SLQQIRKLFDILCTLAFSDSSSS-SSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp HHGGGGGGGG---HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCcccc-hhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 33344444433 23223445677777764211111 1122333344455677778777766654444443
No 405
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=34.46 E-value=5.9e+02 Score=27.02 Aligned_cols=408 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHhhc-----CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009622 75 LPVMVAGVW-----SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (530)
Q Consensus 75 l~~l~~~l~-----s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~ 149 (530)
++.+..+.. +.+++.....+..+...+.- -+...+.+.++++.+..-+.+.. +.+..++.||+.++.-..
T Consensus 190 F~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~w---iPl~yIfeTnIieLv~~~f~s~p--d~r~~tl~CLtEi~~L~~ 264 (1053)
T COG5101 190 FPQIFGLCKQILEYSRDESLIEATLESLLRFLEW---IPLDYIFETNIIELVLEHFNSMP--DTRVATLSCLTEIVDLGR 264 (1053)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhccCC--chhHHHHHHHHHHHhhcc
Q ss_pred hhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcCCCchhHHHHHH
Q 009622 150 EHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNAT 223 (530)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~~~~~~~~~~a~ 223 (530)
.-...-.....+....+.... ......+..-.+-++.......+-..+.. ......-+.+|......+...++.
T Consensus 265 ~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah 344 (1053)
T COG5101 265 HPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAH 344 (1053)
T ss_pred CcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-----------HHHHHHhCcHHHHHH
Q 009622 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVFPRLAE 292 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-----------~~~~~~~~~i~~L~~ 292 (530)
.-|.++++-.....+...-..-..++.=|.+.-..+-..-..-|.+++..+... ...-.-.|++..|.-
T Consensus 345 ~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrl 424 (1053)
T COG5101 345 GYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRL 424 (1053)
T ss_pred HHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHHHHH
Q ss_pred hhCCCCc--------------------------hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHH
Q 009622 293 FLMHPSP--------------------------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIK 345 (530)
Q Consensus 293 lL~~~~~--------------------------~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~ 345 (530)
.+-..-+ .....--.+|-.++.-....++..+ +..+...+.... +..-.
T Consensus 425 vlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~m----i~Klarq~dg~EWsw~nl 500 (1053)
T COG5101 425 VLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYM----IGKLARQLDGKEWSWNNL 500 (1053)
T ss_pred HHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHH----HHHHHHHhcCCccchhhH
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--CChHHHHhccC
Q 009622 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--GCIKPLCDLLV 423 (530)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~lL~ 423 (530)
...||+++.++..-.+....-+--+++..|+.+..-...+--+.+...=.-...+..+...+.-..- -++..|.++++
T Consensus 501 NtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMh 580 (1053)
T COG5101 501 NTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMH 580 (1053)
T ss_pred hHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCc-hhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009622 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDV-NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 424 ~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~ 492 (530)
..+..++..|++.+.++...++..-...+.+. ++|...+. -+.-..-..|+-.+-..+|+.+--+|..
T Consensus 581 E~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Ii-rnl~ktT~dL~pqQ~htfYeAcg~vIse 649 (1053)
T COG5101 581 EDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYII-RNLPKTTGDLEPQQKHTFYEACGMVISE 649 (1053)
T ss_pred hhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHH-HhhhhhcccCChHHHhHHHHHHhHHHhc
No 406
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=34.17 E-value=3e+02 Score=23.61 Aligned_cols=155 Identities=10% Similarity=0.090 Sum_probs=84.1
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009622 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 408 (530)
=|.|+.+|... .++......|+.+.+.-...+ ...+.|.-+.|.+.+.+.+..-...|...+..|...-..+....
T Consensus 5 kplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 5 KPLLISCLTMQ---ETKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHH
Confidence 45677777644 233333344444433211111 11245666777776655433444678888888874335566666
Q ss_pred HHHcCChHHHHhccCCCC-hHHHHH--HH-HHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH-HHH
Q 009622 409 LVIQGCIKPLCDLLVCPD-PRIVTV--CL-EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA-EIY 483 (530)
Q Consensus 409 l~~~~~l~~L~~lL~~~~-~~v~~~--al-~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~v~ 483 (530)
+++. +++.+.+.|..+. .++... |+ .++...+...+.... ...+.+++.. .++.+.++.+...+ +.-
T Consensus 81 ~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~-----~~~vk~L~~~--mv~Sv~elV~~g~E~~~l 152 (174)
T PF04510_consen 81 FMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMR-----VDLVKELLPK--MVKSVKELVERGMEVGFL 152 (174)
T ss_pred HHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccH-----HHHHHHHHHH--HHHHHHHHHHcccHHHHH
Confidence 6665 6777777666552 233322 22 222323332222110 1123333322 57888888889888 888
Q ss_pred HHHHHHHHHhCC
Q 009622 484 EKSVKLLETYWL 495 (530)
Q Consensus 484 ~~a~~il~~~~~ 495 (530)
.+|..-+++++.
T Consensus 153 ~rgl~~~e~~v~ 164 (174)
T PF04510_consen 153 RRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHH
Confidence 888888888765
No 407
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.57 E-value=8.6e+02 Score=28.67 Aligned_cols=200 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009622 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (530)
Q Consensus 287 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (530)
+..+++-|...++..+..|+.-++.+....+......+-........+++.+. +..||...-.++..+...-...+...
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc-------------------CCCCh
Q 009622 367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL-------------------VCPDP 427 (530)
Q Consensus 367 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-------------------~~~~~ 427 (530)
.+ .+++...-.-.+.+..|-..|...+..........+.-.+.+..+.....+.+ +..-+
T Consensus 122 LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~ 200 (1312)
T KOG0803|consen 122 LK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQ 200 (1312)
T ss_pred HH-hhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622 428 RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 428 ~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
.+...++.++..++...-.... .......+...---+.+-.+..++.+.|...+.+++-.+
T Consensus 201 Rvi~ssLl~l~~l~~~~~~~~e-----l~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l 261 (1312)
T KOG0803|consen 201 RVISSSLLLLLKLFKITGDEEE-----LHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSL 261 (1312)
T ss_pred HHHHHHHHHHHHHHHHhCchHh-----hhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHH
No 408
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.53 E-value=1.2e+03 Score=30.55 Aligned_cols=179 Identities=8% Similarity=0.052 Sum_probs=91.2
Q ss_pred cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhch-----HHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA-----LPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-----l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.+++.+++.-+ .+++..++..+..+|.+++.............. +|...+.+....-.++.-.+.++.++....
T Consensus 1125 ~~~~~~lv~eL-~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~ 1203 (3550)
T KOG0889|consen 1125 MNVFSPLVLEL-FNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLG 1203 (3550)
T ss_pred HHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcC
Confidence 34677777777 777889999999999998877522221111111 111112222222233333333333332211
Q ss_pred h-------HHHHHHHHhCc--------HHHHHHhhCCC----CchhHHHHHHHHhHhhcCCchhhH--HHhhcCchHHHH
Q 009622 275 N-------DKIQAVIEAGV--------FPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQ--CVIEYQALPCLL 333 (530)
Q Consensus 275 ~-------~~~~~~~~~~~--------i~~L~~lL~~~----~~~~~~~a~~~L~nl~~~~~~~~~--~~~~~~~l~~L~ 333 (530)
+ +........+. ...+.+..... ....+..++.+++......+.... .-...+++..+.
T Consensus 1204 p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~f 1283 (3550)
T KOG0889|consen 1204 PCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFF 1283 (3550)
T ss_pred CcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHH
Confidence 1 11110000000 00022222111 223466777777666554443222 223457888888
Q ss_pred HhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009622 334 NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 334 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
+.+... .+++...+..++......+...-...++.+.-|.|..+-+
T Consensus 1284 k~l~~~-~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d 1329 (3550)
T KOG0889|consen 1284 KSLYKR-SSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSD 1329 (3550)
T ss_pred HHHcCC-hHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhH
Confidence 888888 8888888888888887765554455555555455555433
No 409
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=33.18 E-value=1e+02 Score=29.21 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=32.8
Q ss_pred HHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622 459 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 459 ~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
.++|.+...-..+..|..|++++|...|..+|..|-.
T Consensus 37 ~~lL~~T~IG~~Vn~lrkh~~~~I~~lAk~li~~WK~ 73 (299)
T TIGR01385 37 EELLQETKVGVKVNKLRKHPNEDISKLAKKIIKSWKK 73 (299)
T ss_pred HHHHhhCchhHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 5778888888889999999999999999999998754
No 410
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.92 E-value=7.8e+02 Score=28.01 Aligned_cols=134 Identities=10% Similarity=0.111 Sum_probs=84.7
Q ss_pred CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH--HHHHHHHHhCcH
Q 009622 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR--EQIQAVIEANII 372 (530)
Q Consensus 295 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~--~~~~~l~~~~~i 372 (530)
.+-.+.+|..|+..||-.+..-|+ .+++...+..+-=.|++. ...||..+..+|-.|...+. .....+ -..+=
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~~~~L~lF-tsRFK 371 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDEDKDKLELF-TSRFK 371 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecC-ccHHHHHHHHHHHHHHhccccchHHHHH-HHHHH
Confidence 345788999999999988876553 456666666665566666 88999999999999987521 222222 23455
Q ss_pred HHHHHHH-hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHH
Q 009622 373 GPLVALL-ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 373 ~~L~~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~l 440 (530)
..++++. .+.+..|+...+..+.-+...+ ++...-+..+..++-+.++.+...+...+..-
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSG-------LLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhccc-------ccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 5667766 3335666666655554444332 12233455666777777777777666555443
No 411
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.50 E-value=1.8e+02 Score=32.18 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=68.2
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009622 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (530)
.++.+...+|++.+-.+|..++.++.-... ..+.. -..+-+...+.++..+... ++-+...|+.++-+++..+.+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~-LlPlvhq~W~~vie~~~~k-~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNL-LLPLVHQTWPSVIECLLCK-DPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchh-HhHHHHhhhhHHHHHHhcC-chHHHHHHHHHHHHHHHHhhh
Confidence 677888889999999999999988865432 11111 1222356778888999888 999999999999999986666
Q ss_pred HHHHHHHhCcHHHHHHHHhc
Q 009622 362 QIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 362 ~~~~l~~~~~i~~L~~ll~~ 381 (530)
.+..-+-..++|.+-.++.+
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55554444577777665543
No 412
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=31.69 E-value=5.9e+02 Score=26.21 Aligned_cols=233 Identities=13% Similarity=0.109 Sum_probs=109.8
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHhhhCC---Cchhh-------hhHhhcCChHHHHHhhc----CCC---chhHHH
Q 009622 159 GAVPIFVKLLYS-PSDDVREQAVWALGNIAGD---SPRCR-------DLVLSQGGLVPLLAQLN----GQP---KLSMLR 220 (530)
Q Consensus 159 g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~---~~~~~-------~~i~~~~~i~~Ll~ll~----~~~---~~~~~~ 220 (530)
.+|..+.++++. ...-++.+++|.||.+--. +...| ..+-+..++...+..+. +.+ .+...+
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk 176 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK 176 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH
Confidence 456777777765 5677899999999988421 11111 12233445555555542 111 244455
Q ss_pred HHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch
Q 009622 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300 (530)
Q Consensus 221 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 300 (530)
.++..+.......+.++ .....++..|.++ +..++++..++..-..=+..+. ....++..=+.|.++.-++. .
T Consensus 177 vvl~~ia~vgeS~qyPP-VNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaqSSq-sAa~fLg~WlsPpli~sLs~---~ 249 (589)
T PF11229_consen 177 VVLKPIATVGESYQYPP-VNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQ-SAAMFLGSWLSPPLIHSLSV---N 249 (589)
T ss_pred HHHHHhhhcCCCCCCCC-ccHHHHhhHHHhc--cccHHHHHHHHHHHHHhccccc-cHHHHHHhhcCcchhhhhhH---H
Confidence 55555444433322111 1223333444433 3356777666654333232222 23445554444555544433 3
Q ss_pred hHHHHHHHHhHhhcC-CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHH
Q 009622 301 VLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVAL 378 (530)
Q Consensus 301 ~~~~a~~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~l 378 (530)
.+...+.-+.-.... .+++.+.+++.-.+..+-..-... ++++...+...|+.-.. -+|.+.-.-+-......++++
T Consensus 250 tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~-~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~l 328 (589)
T PF11229_consen 250 TKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPS-NPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIFDL 328 (589)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 344444444444433 234444444432333222222223 66777777777776444 233222111112244555555
Q ss_pred H----hcCchhHHHHHHHHHHHhhc
Q 009622 379 L----ENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 379 l----~~~~~~v~~~a~~aL~nl~~ 399 (530)
+ +..+.++-...+.+|..+..
T Consensus 329 LPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 329 LPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred CcccccHHHHHHHHHHHHHHhhcCH
Confidence 5 23345555566667766655
No 413
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=30.59 E-value=4.8e+02 Score=24.87 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=62.6
Q ss_pred hCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCch--hhHHHhhcCchHHHHHhhcCCC--chhHHHHHHHHHHHHhc
Q 009622 284 AGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDM--QTQCVIEYQALPCLLNLLSGNY--KKSIKKEACWTVSNITA 357 (530)
Q Consensus 284 ~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~--~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~ 357 (530)
.|++..+++.+... +...+-....++-....+... ....+.+.|+++.++..+-++. +..+...+.-.||.+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 47888888887654 456777888888888888766 2335668899999999887653 34678888899999999
Q ss_pred CCHHHHHHH
Q 009622 358 GNREQIQAV 366 (530)
Q Consensus 358 ~~~~~~~~l 366 (530)
.+......+
T Consensus 174 ~n~~~f~~l 182 (303)
T PF12463_consen 174 FNRDAFQRL 182 (303)
T ss_pred CCHHHHHHH
Confidence 887765544
No 414
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=30.10 E-value=71 Score=20.30 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=13.3
Q ss_pred CCCCchHHhh-hhhhHHHHHHH
Q 009622 18 VAVDADEGRR-RREDNMVEIRK 38 (530)
Q Consensus 18 ~~~~~~~~~~-~r~~~~~~lRk 38 (530)
+..|++|+++ .|++.-..+|+
T Consensus 9 pk~DPeE~k~kmR~dvissvrn 30 (51)
T PF15178_consen 9 PKMDPEEMKRKMREDVISSVRN 30 (51)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4578888876 45555555553
No 415
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.09 E-value=6.2e+02 Score=27.98 Aligned_cols=145 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred hHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc----CCCchhHHHHHHHHhhhhcc
Q 009622 161 VPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----GQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 161 i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~----~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..|=+++...+ ....+.++..+-.++.+....-+. .++.+++... ...++++...+...++.++.
T Consensus 464 ~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~-----~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~ 538 (982)
T KOG2022|consen 464 IDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETEST-----WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSN 538 (982)
T ss_pred HHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhH-----HHHHHHHhccccccccCChhHHHHHHHHHHHHHH
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHH
Q 009622 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV 309 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L 309 (530)
. -..........+|.|++.+. +++....+...+..++....+......+ +++..+-..+... .+..+....+.+
T Consensus 539 ~-l~e~P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d-~~~a~~~e~l~~~~~~~S~~~klm~sI 614 (982)
T KOG2022|consen 539 W-LGEHPMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYAD-QFSAVCYEVLNKSNAKDSDRLKLMKSI 614 (982)
T ss_pred H-HhcCCcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHH-HHHHHHHHHhcccccCchHHHHHHHHH
Q ss_pred hHhhc
Q 009622 310 GNIVT 314 (530)
Q Consensus 310 ~nl~~ 314 (530)
|.+..
T Consensus 615 Gyvls 619 (982)
T KOG2022|consen 615 GYVLS 619 (982)
T ss_pred HHHHH
No 416
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=29.42 E-value=2.2e+02 Score=24.73 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=51.4
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009622 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (530)
+.+.....+++.-++..++.++...... .... ..+++.+-.++.++ +.-|++...|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~-----~~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDF-----DLLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccH-----HHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5677778888888888887777665543 1111 12345555556666 889999999999999988777655555
Q ss_pred H
Q 009622 368 E 368 (530)
Q Consensus 368 ~ 368 (530)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 4
No 417
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=28.90 E-value=5.9e+02 Score=25.35 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=51.8
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
+...+..++..++-.|+.+..+.+++-++..-.+|.++-+.-..+|..+ ..++-..+++.+.....-.-....+.+|+.
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fi-rk~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFI-RKSINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHH-HHhhcchhhhhcccccccCCHHHHHHHHHH
Confidence 4556667778889999999999999999998888888876444444433 223333444444222222223344445555
Q ss_pred hccCC
Q 009622 229 FCRGK 233 (530)
Q Consensus 229 L~~~~ 233 (530)
+..+.
T Consensus 246 iIngf 250 (457)
T KOG2085|consen 246 IINGF 250 (457)
T ss_pred hcCcc
Confidence 55443
No 418
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=28.85 E-value=3.8e+02 Score=23.06 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=70.7
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh-cCCHHHHHHH
Q 009622 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT-AGNREQIQAV 366 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~-~~~~~~~~~l 366 (530)
+.|+..|...+. .......|+.++..-.... ...+.|.-+-|...+.+. ...--..|..+...|. ....+.+..+
T Consensus 6 plLIsCL~~q~~--k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 6 PLLISCLTMQET--KESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSL-SENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred HHHHHHHHhhcc--cHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHh-hccchHHHHHHHHhCCchhhhhHHHHH
Confidence 455666655432 2333344444432111111 112445555565655543 2222356777777776 3445556666
Q ss_pred HHhCcHHHHHHHHhcC-chhHHHHHHH---H---HHHhhcCC-CHHHHHHHHHcCChHHHHhccCCCCh-HHHHHHHHHH
Q 009622 367 IEANIIGPLVALLENA-EFDIKKEAAW---A---ISNATSGG-THEQIKFLVIQGCIKPLCDLLVCPDP-RIVTVCLEGL 437 (530)
Q Consensus 367 ~~~~~i~~L~~ll~~~-~~~v~~~a~~---a---L~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~~~~~-~v~~~al~~l 437 (530)
++. +++...+.|.++ +.++....+. + ...+.... ..+..+.++.. .+..+-+++..+.. .++..++.-+
T Consensus 82 ~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~-mv~Sv~elV~~g~E~~~l~rgl~~~ 159 (174)
T PF04510_consen 82 MEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPK-MVKSVKELVERGMEVGFLRRGLRDF 159 (174)
T ss_pred HHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 664 778888877766 2333322211 1 11222211 12333333322 44555555555544 5666666666
Q ss_pred HHHHhh
Q 009622 438 ENILKV 443 (530)
Q Consensus 438 ~~ll~~ 443 (530)
..++..
T Consensus 160 e~~v~~ 165 (174)
T PF04510_consen 160 ESFVSR 165 (174)
T ss_pred HHHHHH
Confidence 666543
No 419
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=28.28 E-value=4.5e+02 Score=23.81 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC------------CH-HH----HHHHHHHHHHHhcCCh
Q 009622 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED------------YP-QL----QFEAAWALTNIASGTS 149 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~------------~~-~i----~~~a~~~L~~l~~~~~ 149 (530)
+.....++..+..+++. ++......+.++++.+.+.|..-+ ++ .+ -..=...|+.++. ++
T Consensus 78 ~~y~~vGc~L~~~Ll~~--~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~ 154 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS--PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TP 154 (226)
T ss_pred hHHHHHHHHHHHHHHcC--cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Ch
Confidence 44555677777777765 455666668888888888776431 01 12 2223346777776 67
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
.....+-+.++...+..++...+. ......+|.++=...+ |....++.......+..++..|+..|..+
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~---------~~~R~iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVD---------GHPRIILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCc---------cHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 778888889999999999877533 2223335555522222 23333444433777889999999888766
Q ss_pred cc
Q 009622 230 CR 231 (530)
Q Consensus 230 ~~ 231 (530)
.+
T Consensus 224 lr 225 (226)
T PF14666_consen 224 LR 225 (226)
T ss_pred hc
Confidence 53
No 420
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=27.60 E-value=49 Score=20.69 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=25.0
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009622 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (530)
+++.+...++.. +-...+...+...+.++ ++.||+.|..+
T Consensus 2 ~l~~iv~~dp~l---l~~~~v~~~i~~rl~D~-s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTL---LDSSDVQSAIIRRLSDS-SPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccc---cchHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 345555544422 12235667777888888 89999888654
No 421
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.04 E-value=1.3e+02 Score=23.88 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC
Q 009622 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (530)
Q Consensus 160 ~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 190 (530)
+++.|+.-|.++++++...|+.+|...|.+.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 4788999999999999999999999998777
No 422
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=26.67 E-value=2.8e+02 Score=24.11 Aligned_cols=68 Identities=13% Similarity=0.246 Sum_probs=47.6
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009622 330 PCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407 (530)
Q Consensus 330 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 407 (530)
+.+..++.++ +.-+|+.++.++...... ..+ .+++.+-.++.+++..|+..+.|+|..+... .++...
T Consensus 108 ~~~~~w~~s~-~~~~rR~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~ 177 (197)
T cd06561 108 DLLEEWAKSE-NEWVRRAAIVLLLRLIKKETDFD--------LLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVI 177 (197)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 6788888888 888888887777665543 111 1334444455567889999999999999987 444433
No 423
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=26.55 E-value=2.1e+02 Score=19.46 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=34.8
Q ss_pred hHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHHhCCCCCCC
Q 009622 458 FTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLETYWLDDEDE 500 (530)
Q Consensus 458 ~~~~~~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~~~~~~~~~ 500 (530)
.+..+.+.|+...|.++ ...++++|.+.+..+++-...++.++
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~ 54 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEE 54 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 58888899999999888 45578999999999999877665543
No 424
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.14 E-value=1e+03 Score=27.17 Aligned_cols=134 Identities=8% Similarity=0.041 Sum_probs=83.7
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH-HHHHHHHHcCChHHHH
Q 009622 341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH-EQIKFLVIQGCIKPLC 419 (530)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~~l~~L~ 419 (530)
.+.+|..+...|+-.+...|. .+++...+..+-=.|.+.+..||..++.+|-.|...... ...+. .....-..++
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l-FtsRFK~RIV 375 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL-FTSRFKDRIV 375 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH-HHHHHHHHHH
Confidence 788999888888887765554 355555666666667778899999999999999986321 12222 2223445566
Q ss_pred hcc-CCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622 420 DLL-VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 420 ~lL-~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
.+. ..-+..|+...+..+......+ .+. ..-+..+..|....++++...|-..+..-+.
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~~~g----------------~L~-d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~ 435 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLSSSG----------------LLS-DKDILIVYSLIYDSNRRVAVAAGEFLYKKLF 435 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHhccc----------------ccC-hhHHHHHHHHHhccCcchHHHHHHHHHHHhh
Confidence 666 2334445444333222221111 111 2225678889999999999888777765443
No 425
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=25.08 E-value=3.3e+02 Score=21.38 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=28.3
Q ss_pred CCchhHHHHHHHHhHhhcC-CchhhHHHhhcCchHHHHHhhc
Q 009622 297 PSPSVLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLS 337 (530)
Q Consensus 297 ~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~ 337 (530)
.+..+...++.+|..++.| +.+....+.+..+++.+..+|.
T Consensus 65 ~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 65 DNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHh
Confidence 3445666777778888877 5556666667777777777764
No 426
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=24.95 E-value=4.2e+02 Score=22.54 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=46.9
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009622 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
-+...+..+..-.|..+...++.++.+.... ..-.......++|.+..+|.+..+.-...++..+..+...
T Consensus 29 ~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 29 DIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3444444444445666766666666544433 3345566688899999999999888888888777766543
No 427
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=24.51 E-value=3.6e+02 Score=23.15 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=59.4
Q ss_pred CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 009622 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (530)
Q Consensus 214 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l 293 (530)
..-++++.|..+++.+........ ....++..+...+.. +.+|+.-+...+..++...+.....-++ .+++.+-..
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~ 114 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKT 114 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHH
Confidence 346889999999999877532222 245567777777866 8999999999999998776654332222 556666666
Q ss_pred hCCC------------CchhHHHHHHHHhHh
Q 009622 294 LMHP------------SPSVLIPALRTVGNI 312 (530)
Q Consensus 294 L~~~------------~~~~~~~a~~~L~nl 312 (530)
|+.. ..+....+++++..+
T Consensus 115 L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 115 LSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp HH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 6431 123455566666555
No 428
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.41 E-value=2.1e+02 Score=21.60 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHh
Q 009622 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIA 145 (530)
Q Consensus 85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~ 145 (530)
++..++..|+..+..++....+. ..-+...+...+.+.+.+++ +....+-|+..|..+.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~--~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSS--YPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999988764211 11122346777777776554 4567888998888883
No 429
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=24.31 E-value=6.8e+02 Score=24.50 Aligned_cols=130 Identities=11% Similarity=0.096 Sum_probs=79.0
Q ss_pred HHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh-hcCCC----chhHHHHHHHHH
Q 009622 279 QAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNY----KKSIKKEACWTV 352 (530)
Q Consensus 279 ~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~----~~~v~~~a~~~L 352 (530)
+.+.+.+++..|..+-..+ .+.++..+++.+.++.....+. .+....+...+.++ +.... ...+.++-...+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 3455667777777775553 4667888888888887654432 22344556666666 43221 233555555666
Q ss_pred HHHhc---CCHHHHHHHHHh--------------------------CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC--
Q 009622 353 SNITA---GNREQIQAVIEA--------------------------NIIGPLVALLENAEFDIKKEAAWAISNATSGG-- 401 (530)
Q Consensus 353 ~nl~~---~~~~~~~~l~~~--------------------------~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-- 401 (530)
..+|. .+|.....+++. .++..|+..+.+. .++-..|..+|.-++.-.
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 66654 466655555532 1456777777765 577777777777776654
Q ss_pred CHHHHHHHHH
Q 009622 402 THEQIKFLVI 411 (530)
Q Consensus 402 ~~~~~~~l~~ 411 (530)
++....++++
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5555666666
No 430
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.62 E-value=3.6e+02 Score=21.03 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (530)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (530)
+.+.|..-..|++.+.. ... .++..+.+.+....+.-+..+++.+-.++..............+.+.+..
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~ 86 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAK-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLD 86 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 44566666777776642 111 34555666677777778888999998888765544444444444666666
Q ss_pred hhcCCCchhHHHHHHH
Q 009622 335 LLSGNYKKSIKKEACW 350 (530)
Q Consensus 335 lL~~~~~~~v~~~a~~ 350 (530)
..... ++.+|.....
T Consensus 87 ~~~~~-~~~~r~kl~r 101 (114)
T cd03562 87 AYEKV-DEKTRKKLER 101 (114)
T ss_pred HHHhC-CHHHHHHHHH
Confidence 66655 6666554333
No 431
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.57 E-value=3.7e+02 Score=21.22 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=31.7
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009622 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 411 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 411 (530)
+++.|+..|.+++++|...|..+|...+... ...+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHHHH
Confidence 5788899999999999999999999999853 55555554
No 432
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=23.55 E-value=8.4e+02 Score=25.27 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=41.7
Q ss_pred HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009622 363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE 438 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~ 438 (530)
+..++-..++-.+.+-....|..+...+..++.+|+.. .....++ +++.|.-+|..+..+-+..|+..+.
T Consensus 231 IgElLlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq---~VahEIv---~Leil~lLLe~PTddSvevaI~flk 300 (739)
T KOG2140|consen 231 IGELLLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQ---QVAHEIV---ALEILTLLLERPTDDSVEVAIAFLK 300 (739)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHhcCCCCchHHHHHHHHH
Confidence 33343334555556666666777888888888888763 2222222 4677777787765555555554443
No 433
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=23.03 E-value=3.6e+02 Score=21.10 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=44.5
Q ss_pred CCHHHHHHhhcCCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhC
Q 009622 116 GVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAG 188 (530)
Q Consensus 116 g~v~~Lv~ll~~~~---~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~ 188 (530)
|++..+.+.+.+.+ +..-+..+++++..+..-...... .+.|.+...|++ ..++++..|+.+...+..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 66777777776544 345688888888877763222211 345666666665 567799998888877753
No 434
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.23 E-value=81 Score=30.31 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=47.0
Q ss_pred HHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCC
Q 009622 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 178 ~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+....|+++|.-.+..++.+.+.|+++.++.-.. ++.++-+++....|+.+|..+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN 431 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNN 431 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcc
Confidence 3677999999988889999999999988877664 4568889999999999988875
No 435
>PLN03205 ATR interacting protein; Provisional
Probab=21.91 E-value=5e+02 Score=25.63 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=64.7
Q ss_pred cHHHHHHhhCCCCchhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHH---HHhhcCCCchhHHHHHHHHHHHHhcC-
Q 009622 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCL---LNLLSGNYKKSIKKEACWTVSNITAG- 358 (530)
Q Consensus 286 ~i~~L~~lL~~~~~~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~l~~L---~~lL~~~~~~~v~~~a~~~L~nl~~~- 358 (530)
+++.|+.+..-++..+...+++.|..+.. ++......-.+.+.+..+ ..+........||-+|..+..-+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 34556666666666677777776655542 233322233334443332 22222222567777777665555542
Q ss_pred C-HHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhc
Q 009622 359 N-REQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATS 399 (530)
Q Consensus 359 ~-~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~ 399 (530)
+ ...+..+....+++.+-.+|+.. -..||++|+..|.-+..
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 2 23344455566788888888765 57899999877765543
No 436
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=21.78 E-value=2.3e+02 Score=25.08 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh
Q 009622 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL 210 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll 210 (530)
..+...+...|..++.++.++...+.+. ++.++..+.......--.+..++..+..+++.....+.+. .+..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 3577888899999999988888777653 3333333322222222345667777777777666665444 377888888
Q ss_pred cCCCchhHHHHHHHHhhhhccC
Q 009622 211 NGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 211 ~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
.... -....+..|..+|..
T Consensus 152 ~~~g---r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHG---RQPRYLDFLSSLCVC 170 (207)
T ss_dssp ----------------------
T ss_pred HHcC---CChHHHHHHhhhccc
Confidence 4422 112234455555543
No 437
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.68 E-value=4.1e+02 Score=20.99 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=41.4
Q ss_pred cHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhH-HHHHHHHHHHHhc
Q 009622 286 VFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI-KKEACWTVSNITA 357 (530)
Q Consensus 286 ~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~~ 357 (530)
++|.+...|. +..++.+..+..+++.++...+- ...++..+++.+-....... .+.+..++..++.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L------~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL------SDEVLNALMESILKNWTQETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC------cHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 5677777787 66788999999999999874432 22334444444332212222 4778888887775
No 438
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=20.50 E-value=1.5e+03 Score=27.18 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=54.1
Q ss_pred hhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcH
Q 009622 293 FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372 (530)
Q Consensus 293 lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 372 (530)
++.+.++.++.-+......+-...+.. ....++..|+..+-++ ...-...|..+|..++..++....... .++
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~----~qqeVv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~~~~~l~~fa--~~l 515 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSY----CQQEVVGALVTHIGSG-NSQEVDAALDVLCELAEKNPSELQPFA--TFL 515 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHTH--HHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhccHHHHHHHH--HHH
Confidence 456778888888877777776655432 2234566777777555 443446788888888875555443332 233
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622 373 GPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 373 ~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
..+++.+..=+..=-+.....|+.++.
T Consensus 516 ~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 516 KGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp HGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 444444443332222334555555553
Done!