BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009623
         (530 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B8J|A Chain A, Rimp_alpha1a
          Length = 528

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/502 (80%), Positives = 452/502 (90%), Gaps = 1/502 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 63  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 122 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 181

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           +QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSGG+H+QIK+LV +GCIKPLCD
Sbjct: 362 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 421

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 480
           LL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+QMID+AEGLEKIE+LQ+HDN 
Sbjct: 422 LLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN 481

Query: 481 EIYEKSVKLLETYWLDDEDETM 502
           EIYEK+VK+LE YW+D+ED+TM
Sbjct: 482 EIYEKAVKILEAYWMDEEDDTM 503


>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
 pdb|2YNS|B Chain B, Rimp_alpha_b54nls
 pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
 pdb|4B8P|A Chain A, Rimp_alpha_a89nls
 pdb|4B8P|B Chain B, Rimp_alpha_a89nls
          Length = 490

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/462 (77%), Positives = 405/462 (87%), Gaps = 1/462 (0%)

Query: 41  REESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKL 100
           +E +  K  R+ + +   L  D +    A    +LP M+ GV+S+D+ +Q E TTQFRKL
Sbjct: 5   KETAAAKFERQHMDSPD-LGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKL 63

Query: 101 LSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160
           LSIERSPPIEEVI+SGVVPRFV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGA
Sbjct: 64  LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
           VPIFVKLL S SDDVREQAVWALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLR
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183

Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280
           NATWTLSNFCRGKPQP F+Q  PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQA
Sbjct: 184 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA 243

Query: 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY 340
           VIEAGV PRL E L+HPSPSVLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N 
Sbjct: 244 VIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL 303

Query: 341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400
           KKSIKKEACWT+SNITAGN++QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSG
Sbjct: 304 KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 363

Query: 401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQ 460
           G+H+QIK+LV +GCIKPLCDLL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+Q
Sbjct: 364 GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQ 423

Query: 461 MIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETM 502
           MID+AEGLEKIE+LQ+HDN EIYEK+VK+LE YW+D+ED+TM
Sbjct: 424 MIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTM 465


>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
           Cargo (Kap60p) And Rangtp
          Length = 530

 Score =  492 bits (1266), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/517 (53%), Positives = 355/517 (68%), Gaps = 19/517 (3%)

Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRR-----EGLQNQQPL 59
           P  +  + +NK + +  ADE RRRR+   VE+RK KR+E+L K+R      +G  + +  
Sbjct: 14  PEYRRTNFKNKGRFS--ADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71

Query: 60  ANDVNAPGT--AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
            + V+A     ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131

Query: 118 VPRFVEFLLREDYPQ-LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           VPR VEF+ RE+ P+ LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+
Sbjct: 132 VPRLVEFM-RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQ 235
           EQA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRG KPQ
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQ 249

Query: 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295
           P +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L 
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309

Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           H S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNI
Sbjct: 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNI 368

Query: 356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQG 413
           TAGN EQIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QG
Sbjct: 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428

Query: 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES 473
           CIKPLCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI +
Sbjct: 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488

Query: 474 LQTHDNAEIYEKSVKLLETYWLDDE---DETMPPGDA 507
            Q ++N +IYEK+ K++ETY+ ++E   DETM P +A
Sbjct: 489 CQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNA 525


>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
 pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
          Length = 447

 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/427 (58%), Positives = 309/427 (72%), Gaps = 4/427 (0%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81

Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141

Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201

Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320

Query: 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435
           +++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380

Query: 436 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW- 494
           GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ 
Sbjct: 381 GLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 440

Query: 495 LDDEDET 501
            +DED +
Sbjct: 441 TEDEDSS 447


>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
           Subunit In Complex With Human Importin Alpha5
 pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
           Subunit In Complex With Human Importin Alpha5
          Length = 450

 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/427 (58%), Positives = 309/427 (72%), Gaps = 4/427 (0%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84

Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144

Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204

Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323

Query: 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435
           +++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383

Query: 436 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW- 494
           GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ 
Sbjct: 384 GLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443

Query: 495 LDDEDET 501
            +DED +
Sbjct: 444 TEDEDSS 450


>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
           Complex With A Nup2p N-Terminal Fragment
 pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
           Complex With A Nup2p N-Terminal Fragment
          Length = 443

 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/440 (57%), Positives = 314/440 (71%), Gaps = 10/440 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179

Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298

Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358

Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 359 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418

Query: 491 ETYWLDDE---DETMPPGDA 507
           ETY+ ++E   DETM P +A
Sbjct: 419 ETYFGEEEDAVDETMAPQNA 438


>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
 pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
          Length = 454

 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/440 (57%), Positives = 314/440 (71%), Gaps = 10/440 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179

Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298

Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358

Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 359 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418

Query: 491 ETYWLDDE---DETMPPGDA 507
           ETY+ ++E   DETM P +A
Sbjct: 419 ETYFGEEEDAVDETMAPQNA 438


>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
 pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
          Length = 422

 Score =  457 bits (1177), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/424 (58%), Positives = 304/424 (71%), Gaps = 7/424 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178

Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLI 297

Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357

Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 358 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417

Query: 491 ETYW 494
           ETY+
Sbjct: 418 ETYF 421


>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
 pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
          Length = 422

 Score =  456 bits (1174), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/424 (57%), Positives = 304/424 (71%), Gaps = 7/424 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178

Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLI 297

Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357

Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENI+K+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 358 EVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417

Query: 491 ETYW 494
           ETY+
Sbjct: 418 ETYF 421


>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
           A Complex With A C-Myc Nls Peptide
 pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
           A Complex With A C-Myc Nls Peptide
          Length = 423

 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/426 (57%), Positives = 304/426 (71%), Gaps = 7/426 (1%)

Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59

Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119

Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 297

Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPR 428
           +I PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 357

Query: 429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK 488
           I+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K
Sbjct: 358 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417

Query: 489 LLETYW 494
           ++ETY+
Sbjct: 418 IIETYF 423


>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
           Nucleoplasmin Nls Peptide
          Length = 424

 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/426 (57%), Positives = 304/426 (71%), Gaps = 7/426 (1%)

Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59

Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119

Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 297

Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPR 428
           +I PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 357

Query: 429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK 488
           I+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K
Sbjct: 358 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417

Query: 489 LLETYW 494
           ++ETY+
Sbjct: 418 IIETYF 423


>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
           ALPHA2
          Length = 529

 Score =  426 bits (1096), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/517 (46%), Positives = 329/517 (63%), Gaps = 25/517 (4%)

Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL---QNQQPLAN 61
           P ++ +  +NK K   D+ E RRRR +  VE+RK K++E + K+R           PL  
Sbjct: 10  PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66

Query: 62  DVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+
Sbjct: 67  NRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 123

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAV
Sbjct: 124 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 183

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-P 234
           WALGNIAG     RDLV+  G + PLLA L   P LS      LRN TWTLSN CR K P
Sbjct: 184 WALGNIAGAGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNP 242

Query: 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
            PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L
Sbjct: 243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302

Query: 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
                 ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SN
Sbjct: 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSN 361

Query: 355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC 414
           ITAG ++QIQ V+   ++  LV +L  A+F  +K AAWAI+N TSGGT EQI +LV  G 
Sbjct: 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421

Query: 415 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL 474
           I+PL +LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+L
Sbjct: 422 IEPLMNLLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEAL 476

Query: 475 QTHDNAEIYEKSVKLLETYWL--DDEDETMPPGDASQ 509
           Q H+N  +Y+ S+ L+E Y+   ++ED+ + P   S+
Sbjct: 477 QRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE 513


>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
 pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
 pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
           Peptide
 pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
           (fen1)
          Length = 510

 Score =  410 bits (1053), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 420 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474

Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 475 KYFSVEEEE 483


>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
          Length = 496

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 168 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 226

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 227 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 345

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 346 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 405

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 406 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 460

Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 461 KYFSVEEEE 469


>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
          Length = 509

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 420 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474

Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 475 KYFSVEEEE 483


>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
 pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
 pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
 pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
 pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
 pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
          Length = 510

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 420 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474

Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 475 KYFSVEEEE 483


>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
           Complex
 pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
 pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
           Alpha(70-529) Complex
 pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
           Retinoblastoma Protein Complex
 pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
           Laevis Phosphoprotein Complex
 pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
 pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
           Importin Alpha
          Length = 460

 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/440 (49%), Positives = 293/440 (66%), Gaps = 15/440 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 370 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424

Query: 492 TYWL--DDEDETMPPGDASQ 509
            Y+   ++ED+ + P   S+
Sbjct: 425 KYFSVEEEEDQNVVPETTSE 444


>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
           Complex
 pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
           Complex
          Length = 466

 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 138 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 196

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 315

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 376 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430

Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 431 KYFSVEEEE 439


>pdb|1IAL|A Chain A, Importin Alpha, Mouse
          Length = 453

 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/444 (49%), Positives = 293/444 (65%), Gaps = 17/444 (3%)

Query: 58  PLANDVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
           PL  + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G
Sbjct: 20  PLQENRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 76

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++P+FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + 
Sbjct: 77  LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 136

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCR 231
           EQAVWALGNIAGD    RDLV+  G + PLLA L   P LS      LRN TWTLSN CR
Sbjct: 137 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCR 195

Query: 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290
            K P PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L
Sbjct: 196 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 255

Query: 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350
            + L      ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA W
Sbjct: 256 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATW 314

Query: 351 TVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV 410
           T+SNITAG ++QIQ V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV
Sbjct: 315 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 374

Query: 411 IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK 470
             G I+PL +LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+K
Sbjct: 375 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDK 429

Query: 471 IESLQTHDNAEIYEKSVKLLETYW 494
           IE+LQ H+N  +Y+ S+ L+E Y+
Sbjct: 430 IEALQRHENESVYKASLNLIEKYF 453


>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
          Length = 461

 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 166 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 224

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 225 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 343

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 344 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 403

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 404 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 458

Query: 492 TYW 494
            Y+
Sbjct: 459 KYF 461


>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
          Length = 424

 Score =  406 bits (1043), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 365 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 419

Query: 492 TYW 494
            Y+
Sbjct: 420 KYF 422


>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
           Importin-Alpha
          Length = 422

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 365 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 419

Query: 492 TYW 494
            Y+
Sbjct: 420 KYF 422


>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
           Plscr1-Nls
          Length = 428

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 370 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424

Query: 492 TYW 494
            Y+
Sbjct: 425 KYF 427


>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
          Length = 427

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 369 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 423

Query: 492 TYW 494
            Y+
Sbjct: 424 KYF 426


>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
           Encephalitis Virus Capsid Protein Nls And Importin Alpha
          Length = 426

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 369 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 423

Query: 492 TYW 494
            Y+
Sbjct: 424 KYF 426


>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
          Length = 427

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 370 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424

Query: 492 TYW 494
            Y+
Sbjct: 425 KYF 427


>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
 pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
          Length = 467

 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/433 (49%), Positives = 286/433 (66%), Gaps = 21/433 (4%)

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ S++   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL R D   +QFE+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72

Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132

Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P +S      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 133 IKYGAVDPLLALL-AVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRL 191

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H +D EVL D CWA+SYL+DG N++I  V++ GV P+L + L      ++ PALR +GN
Sbjct: 192 LHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGN 251

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 252 IVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 310

Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV++L  A+F  +KEA WA++N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 311 VPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIIL 370

Query: 432 VCLEGLENIL----KVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487
           V L+ + NI     K+GE EK          + MI++  GL+KIE+LQ H+N  +Y+ S+
Sbjct: 371 VILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQNHENESVYKASL 421

Query: 488 KLLETYWLDDEDE 500
            L+E Y+  +E+E
Sbjct: 422 SLIEKYFSVEEEE 434


>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
 pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
 pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
 pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
          Length = 252

 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/248 (39%), Positives = 142/248 (57%), Gaps = 15/248 (6%)

Query: 245 LPALAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
           LP +   ++S+D +    A    S  LSDG N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
           QAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190

Query: 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIY 483
            P+ +I+   L  L NI   G  +K           Q + +A  LEK+E LQ+H+N +I 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK-----------QAVKEAGALEKLEQLQSHENEKIQ 239

Query: 484 EKSVKLLE 491
           +++ + LE
Sbjct: 240 KEAQEALE 247



 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 128/225 (56%), Gaps = 8/225 (3%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP M   + S+D   Q   T +F ++LS + +  I+ VI +G +P  V+ L   +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
            EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA       
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHL 251
             V+  G L P L QL   P   +L+ A W LSN   G   + Q   D  + ALPAL  L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
           + S ++++L +A WALS ++ G N++ QAV EAG   +L +   H
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233



 Score =  135 bits (339), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 125/228 (54%), Gaps = 9/228 (3%)

Query: 172 SDDVREQ--AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           SDD++EQ  A      I  D       V+  G L P L QL   P   +L+ A W LSN 
Sbjct: 23  SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81

Query: 230 CRG---KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
             G   + Q   D  + ALPAL  L+ S ++++L +A WALS ++ G N++IQAVI+AG 
Sbjct: 82  ASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
            P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 198

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
           EA W +SNI +G  EQ QAV EA  +  L  L  +    I+KEA  A+
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246



 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
           I+ VI +G +P  V+ L   +   LQ EA WAL+NIASG +E  + V + GA+    +L 
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231

Query: 169 YSPSDDVREQAVWAL 183
              ++ ++++A  AL
Sbjct: 232 SHENEKIQKEAQEAL 246


>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
          Length = 210

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 111/196 (56%), Gaps = 2/196 (1%)

Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73

Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132

Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424
           AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G    L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGAEPALEQLQSS 191

Query: 425 PDPRIVTVCLEGLENI 440
           P+ +I     E LE I
Sbjct: 192 PNEKIQKEAQEALEKI 207



 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 109/197 (55%), Gaps = 6/197 (3%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHLIHSNDD 257
           G  +P + Q    P    L++A   LS    G   + Q   D  + ALPAL  L+ S ++
Sbjct: 11  GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNE 68

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           ++L +A WALS ++ G N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G +
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 377
            Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQ QAV EA     L  
Sbjct: 129 EQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQ 187

Query: 378 LLENAEFDIKKEAAWAI 394
           L  +    I+KEA  A+
Sbjct: 188 LQSSPNEKIQKEAQEAL 204



 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 105/199 (52%), Gaps = 8/199 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIER--SPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           LP MV  + S D   Q E  +  RKL  I    +  I+ VI +G +P  V+ L   +   
Sbjct: 14  LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70

Query: 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192
           LQ EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA     
Sbjct: 71  LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR-GKPQPPFDQVSPALPALAHL 251
               V+  G L P L QL   P   +L+ A W LSN    G  Q    + + A PAL  L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188

Query: 252 IHSNDDEVLTDACWALSYL 270
             S ++++  +A  AL  +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207


>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
          Length = 210

 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 112/196 (57%), Gaps = 2/196 (1%)

Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73

Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132

Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424
           AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191

Query: 425 PDPRIVTVCLEGLENI 440
            + +I     E LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207



 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 115/205 (56%), Gaps = 13/205 (6%)

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
            P++ + L  P    L  ALR +  I +G + Q Q VI+  ALP L+ LLS +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
           EA W +SNI +G  EQIQAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131

Query: 407 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE 466
           + ++  G +  L  LL  P+ +I+   L  L NI   G  +K           Q + +A 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-----------QAVKEAG 180

Query: 467 GLEKIESLQTHDNAEIYEKSVKLLE 491
            LEK+E LQ+H+N +I +++ + LE
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALE 205



 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 110/197 (55%), Gaps = 6/197 (3%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHLIHSNDD 257
           G  +P + Q    P    L++A   LS    G   + Q   D  + ALPAL  L+ S ++
Sbjct: 11  GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNE 68

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           ++L +A WALS ++ G N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G +
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 377
            Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQ QAV EA  +  L  
Sbjct: 129 EQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187

Query: 378 LLENAEFDIKKEAAWAI 394
           L  +    I+KEA  A+
Sbjct: 188 LQSHENEKIQKEAQEAL 204



 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 103/199 (51%), Gaps = 8/199 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIER--SPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           LP MV  + S D   Q E  +  RKL  I    +  I+ VI +G +P  V+ L   +   
Sbjct: 14  LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70

Query: 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192
           LQ EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA     
Sbjct: 71  LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR-GKPQPPFDQVSPALPALAHL 251
               V+  G L P L QL   P   +L+ A W LSN    G  Q    + + AL  L  L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188

Query: 252 IHSNDDEVLTDACWALSYL 270
               ++++  +A  AL  L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207


>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
 pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
 pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
 pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
          Length = 210

 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 4/197 (2%)

Query: 245 LPALAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
           LP +   ++S+D +    A    S  LSDG N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
           QAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190

Query: 424 CPDPRIVTVCLEGLENI 440
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207



 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 106/182 (58%), Gaps = 4/182 (2%)

Query: 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           Q +LS  R  +  LS+    + Q   D  + ALPAL  L+ S ++++L +A WALS ++ 
Sbjct: 27  QEQLSATRKFSQILSDGNE-QIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIAS 83

Query: 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332
           G N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L
Sbjct: 84  GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143

Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392
           + LLS +  + I +EA W +SNI +G  EQ QAV EA  +  L  L  +    I+KEA  
Sbjct: 144 VQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202

Query: 393 AI 394
           A+
Sbjct: 203 AL 204



 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 13/205 (6%)

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
            P++ + L        + A R    I++  + Q Q VI+  ALP L+ LLS +  + I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
           EA W +SNI +G  EQIQAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131

Query: 407 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE 466
           + ++  G +  L  LL  P+ +I+   L  L NI   G  +K           Q + +A 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-----------QAVKEAG 180

Query: 467 GLEKIESLQTHDNAEIYEKSVKLLE 491
            LEK+E LQ+H+N +I +++ + LE
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALE 205



 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 105/197 (53%), Gaps = 4/197 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP M   + S+D   Q   T +F ++LS + +  I+ VI +G +P  V+ L   +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
            EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA       
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR-GKPQPPFDQVSPALPALAHLIH 253
             V+  G L P L QL   P   +L+ A W LSN    G  Q    + + AL  L  L  
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190

Query: 254 SNDDEVLTDACWALSYL 270
             ++++  +A  AL  L
Sbjct: 191 HENEKIQKEAQEALEKL 207


>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
           Structural Genomics Consortium Target Or329
          Length = 252

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 44/284 (15%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V + V+ L   D  + Q EAA  L  IASG +   K ++D G V + VKLL S   +V++
Sbjct: 4   VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
           +A  AL NIA         ++  GG V +L +L                           
Sbjct: 63  EAARALANIASGPDEAIKAIVDAGG-VEVLVKL--------------------------- 94

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                         + S D EV  +A  AL+ ++ G ++ I+A+++AG    L + L   
Sbjct: 95  --------------LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 140

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A R + NI +G D   + +++   +  L+ LL+ +    ++KEA   ++NI +
Sbjct: 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIAS 199

Query: 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401
           G    I+A+++A  +  L  LL + + +++KEA  A+ N  SGG
Sbjct: 200 GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243



 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 111/236 (47%), Gaps = 10/236 (4%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWAL 141
           S DS  Q E     R L  I   P   I+ ++ +G V   V+ L   D  ++Q EAA AL
Sbjct: 13  STDSETQKEAA---RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARAL 68

Query: 142 TNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201
            NIASG  E  K ++D G V + VKLL S   +V+++A  AL NIA         ++  G
Sbjct: 69  ANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG 128

Query: 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHSNDDEV 259
           G V +L +L       + + A   L+N   G P      +  A  +  L  L+ S D EV
Sbjct: 129 G-VEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEV 186

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
             +A  AL+ ++ G    I+A+++AG    L + L      V   A R + NI +G
Sbjct: 187 QKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242



 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHSNDDEVL 260
           LV LL   + + +    + A   L+    G P      +  A  +  L  L+ S D EV 
Sbjct: 7   LVKLLTSTDSETQ----KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
            +A  AL+ ++ G ++ I+A+++AG    L + L      V   A R + NI +G D   
Sbjct: 62  KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121

Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380
           + +++   +  L+ LL+ +    ++KEA   ++NI +G  E I+A+++A  +  LV LL 
Sbjct: 122 KAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180

Query: 381 NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
           + + +++KEAA A++N  SG T   IK +V  G ++ L  LL   D  +       LENI
Sbjct: 181 STDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239


>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
           And Its C-Terminal Domain
          Length = 644

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 51  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 107

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 166

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 225

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 281

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336



 Score = 37.0 bits (84), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)

Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
           G +PR V+ L+R              Q QF     +  I  G +          H ++VI
Sbjct: 394 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 453

Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
                +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487


>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
 pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
 pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
 pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
 pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
           Adenomatous Polyposis Coli (Apc) In Complex With
           Beta-Catenin
 pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
           Adenomatous Polyposis Coli (Apc) In Complex With
           Beta-Catenin
 pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
 pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
           Complexed With A Phosphorylated Apc 20mer Repeat
          Length = 538

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 55  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 111

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 112 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 170

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 171 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 229

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 230 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 285

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 286 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 340



 Score = 38.1 bits (87), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)

Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
           G +PR V+ L+R              Q QF     +  I  G +          H ++VI
Sbjct: 398 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 457

Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
                +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 458 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491


>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
 pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
          Length = 540

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 57  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 113

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 114 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 172

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 173 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 231

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 232 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 287

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 288 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 342



 Score = 38.1 bits (87), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)

Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
           G +PR V+ L+R              Q QF     +  I  G +          H ++VI
Sbjct: 400 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 459

Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
                +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 460 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493


>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
 pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
          Length = 550

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 52  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 108

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 109 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 167

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 168 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 226

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 227 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 282

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 283 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 337



 Score = 38.1 bits (87), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)

Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
           G +PR V+ L+R              Q QF     +  I  G +          H ++VI
Sbjct: 395 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 454

Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
                +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 455 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488


>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4  BETA-Catenin Complex
 pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4  BETA-Catenin Complex
 pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4  BETA-Catenin Complex
          Length = 540

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 58  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 114

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 115 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 173

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 174 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 232

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 233 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 288

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 289 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 343



 Score = 38.1 bits (87), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)

Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
           G +PR V+ L+R              Q QF     +  I  G +          H ++VI
Sbjct: 401 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 460

Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
                +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 461 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494


>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
           Catenin
          Length = 533

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 56  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 112

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 113 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 171

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 172 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 230

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 231 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 286

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 287 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 341



 Score = 38.1 bits (87), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)

Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
           G +PR V+ L+R              Q QF     +  I  G +          H ++VI
Sbjct: 399 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 458

Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
                +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 459 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492


>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
           Repeat Complex
 pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
           Repeat Complex
 pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
           Repeat Fragment
 pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
           Repeat Fragment
          Length = 532

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 56  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 112

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 113 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 171

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 172 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 230

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 231 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 286

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 287 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 341



 Score = 38.1 bits (87), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 23/102 (22%)

Query: 108 PIEEVIRSGVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE------- 150
           P+ E    G +PR V+ L+R              Q QF     +  I  G +        
Sbjct: 394 PLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR 450

Query: 151 --HTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
             H ++VI     +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 451 DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492


>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
          Length = 527

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 52  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 108

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 109 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 167

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 168 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 226

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 227 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 282

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 283 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 337



 Score = 38.1 bits (87), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 23/102 (22%)

Query: 108 PIEEVIRSGVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE------- 150
           P+ E    G +PR V+ L+R              Q QF     +  I  G +        
Sbjct: 390 PLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR 446

Query: 151 --HTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
             H ++VI     +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 447 DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488


>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
          Length = 529

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 54  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 110

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 169

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 228

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 284

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339



 Score = 38.1 bits (87), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 23/102 (22%)

Query: 108 PIEEVIRSGVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE------- 150
           P+ E    G +PR V+ L+R              Q QF     +  I  G +        
Sbjct: 392 PLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR 448

Query: 151 --HTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
             H ++VI     +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 449 DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490


>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
           Peptide Inhibitor
          Length = 518

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 41  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 97

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 98  GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 156

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 157 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 215

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 216 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 271

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 272 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 326



 Score = 38.1 bits (87), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 23/102 (22%)

Query: 108 PIEEVIRSGVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE------- 150
           P+ E    G +PR V+ L+R              Q QF     +  I  G +        
Sbjct: 379 PLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR 435

Query: 151 --HTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
             H ++VI     +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 436 DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477


>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
          Length = 516

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 39  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 95

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 96  GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 154

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 155 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 213

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 214 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 269

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 270 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 324



 Score = 38.1 bits (87), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)

Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
           G +PR V+ L+R              Q QF     +  I  G +          H ++VI
Sbjct: 382 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 441

Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
                +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 442 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475


>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
          Length = 514

 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 39  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 95

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 96  GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 154

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 155 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 213

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 214 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 269

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 270 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 324



 Score = 38.1 bits (87), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)

Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
           G +PR V+ L+R              Q QF     +  I  G +          H ++VI
Sbjct: 382 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 441

Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
                +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 442 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475


>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
           DomainUNPHOSPHORYLATED APC R3
          Length = 519

 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 43  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 99

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 100 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 158

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 159 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 217

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 218 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 273

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 274 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 328



 Score = 38.1 bits (87), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 20/94 (21%)

Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
           G +PR V+ L+R              Q QF     +  I  G +          H ++VI
Sbjct: 386 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 445

Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
                +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 446 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479


>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
          Length = 780

 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A   +      S H +    +   G +P  V +L
Sbjct: 187 IMRS---PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 302

Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 361

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 417

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472



 Score = 34.3 bits (77), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 20/94 (21%)

Query: 116 GVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE---------HTKVVI 156
           G +PR V+ L+R              Q QF     +  I    +          H ++VI
Sbjct: 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI 589

Query: 157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
                +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623


>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
 pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
          Length = 253

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 15/113 (13%)

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           +AL  IA  +P     ++     + +L+  N + KL+ L        NF     +  F  
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKY 178

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
           V+P LP + +L+H  D+ V   A  AL +L+   NDK++ V    V  RL E 
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226


>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
          Length = 470

 Score = 38.5 bits (88), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 103/249 (41%), Gaps = 10/249 (4%)

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
           +   G +P  VK L SP D V   A+  L N+       +  V   GGL   +A LN + 
Sbjct: 39  IFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLN-KT 97

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSD 272
            +  L   T  L     G  +     ++   P AL ++  +   E +L      L  LS 
Sbjct: 98  NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWTTSRVLKVLSV 157

Query: 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332
            +++K  A++EAG    L   L  PS  ++   L T+ N+    D  T+       L  L
Sbjct: 158 CSSNK-PAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGXEGLLGTL 213

Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEA 390
           + LL G+   ++   A   +SN+T  N +    V +   I  LV  +  A    DI + A
Sbjct: 214 VQLL-GSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPA 272

Query: 391 AWAISNATS 399
             A+ + TS
Sbjct: 273 ICALRHLTS 281



 Score = 36.6 bits (83), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 23/102 (22%)

Query: 108 PIEEVIRSGVVPRFVEFLLREDY----------PQLQFEAAWALTNIASGTSE------- 150
           P+ E    G +PR V+ L+R              Q QF        I  G +        
Sbjct: 334 PLRE---QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILAR 390

Query: 151 --HTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD 189
             H ++VI     +P+FV+LLYSP ++++  A   L  +A D
Sbjct: 391 DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432


>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
           Genomics Consortium Target Et31
          Length = 280

 Score = 37.7 bits (86), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 30/161 (18%)

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
           P+ VE        Q Q  A    TN+   T+    V+ D   +P+ + LL  P+ DVR  
Sbjct: 127 PKIVE--------QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML-----RNATWTLSNFCRG- 232
           A +A+     D+   RD        V  L   N + ++  +     R     LS  C   
Sbjct: 179 AAFAININKYDNSDIRDC------FVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232

Query: 233 KPQPPFDQVSPA---------LPALAHLIHSNDD-EVLTDA 263
           K    +D +  A         LP L   ++  DD E++T A
Sbjct: 233 KKNTVYDDIIEAAGELGDKTLLPVLDTXLYKFDDNEIITSA 273


>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
 pdb|2BKU|B Chain B, Kap95p:rangtp Complex
 pdb|2BKU|D Chain D, Kap95p:rangtp Complex
 pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
 pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
          Length = 861

 Score = 35.8 bits (81), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V  FVE  +  D  + +  A  A  +I  G  +  +    H A+P  + L+   S  V+E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQPKLSMLRNATWTLSN----FCRG 232
              W +G IA       D      G+V   L  L   PK++   N +WT+ N        
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEA 487

Query: 233 KPQPPFDQVSPAL 245
            P P ++   PAL
Sbjct: 488 TPSPIYN-FYPAL 499



 Score = 32.0 bits (71), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           A+   G+I+ G D   +    +QALP +LNL++ +    +K+   W +  I     E I 
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRIADSVAESID 447

Query: 365 ------AVIEANIIG 373
                  V++A +IG
Sbjct: 448 PQQHLPGVVQACLIG 462


>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
          Length = 861

 Score = 35.8 bits (81), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V  FVE  +  D  + +  A  A  +I  G  +  +    H A+P  + L+   S  V+E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQPKLSMLRNATWTLSN----FCRG 232
              W +G IA       D      G+V   L  L   PK++   N +WT+ N        
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEA 487

Query: 233 KPQPPFDQVSPAL 245
            P P ++   PAL
Sbjct: 488 TPSPIYN-FYPAL 499



 Score = 32.0 bits (71), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           A+   G+I+ G D   +    +QALP +LNL++ +    +K+   W +  I     E I 
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRIADSVAESID 447

Query: 365 ------AVIEANIIG 373
                  V++A +IG
Sbjct: 448 PQQHLPGVVQACLIG 462


>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
 pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
 pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
 pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
          Length = 167

 Score = 33.9 bits (76), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 50  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 106

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211
            SP D V   A+  L N+       +  V   GGL  ++A LN
Sbjct: 107 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 149


>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
           Beta-Catenin
 pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
           Beta-Catenin
 pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
           Beta-Catenin
 pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
           Beta-Catenin
 pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
           Beta-Catenin
          Length = 168

 Score = 33.9 bits (76), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVK 166
             ++RS   P+ V  ++R        E A          S H +    +   G +P  VK
Sbjct: 48  HAIMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK 104

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211
           +L SP D V   A+  L N+       +  V   GGL  ++A LN
Sbjct: 105 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 149


>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
          Length = 457

 Score = 33.1 bits (74), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 19/174 (10%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
            +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V+
Sbjct: 3   TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGL---VPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           + A  AL N+   S   +     Q G+   V LL +         L    W LS+    K
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287
            +     ++ ALP LA      D  ++  + W      DG ++  + V++  VF
Sbjct: 122 EEL----IADALPVLA------DRVIIPFSGWC-----DGNSNMSREVVDPEVF 160


>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
           Bound To The Non-Classical Nls(67-94) Of Pthrp
          Length = 485

 Score = 32.3 bits (72), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA----QLNGQPK 215
           A+P  ++L+  PS  VR+ A W +G I    P   +  ++   L PLL      L+ +P+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465

Query: 216 LSMLRNATWTLSNFCRG 232
           ++   N  W  S+    
Sbjct: 466 VA--SNVCWAFSSLAEA 480


>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
 pdb|2Z5J|A Chain A, Free Transportin 1
 pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
 pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
 pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
 pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
          Length = 890

 Score = 32.0 bits (71), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
           +P+  +LL+     V+E  +  LG IA      + ++     L+P L Q     K +++R
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 455

Query: 221 NAT-WTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           + T WTLS +      QPP   + P +  L   I  ++  V   AC A + L +
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 509


>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
 pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
          Length = 865

 Score = 32.0 bits (71), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
           +P+  +LL+     V+E  +  LG IA      + ++     L+P L Q     K +++R
Sbjct: 374 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 430

Query: 221 NAT-WTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           + T WTLS +      QPP   + P +  L   I  ++  V   AC A + L +
Sbjct: 431 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 484


>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
           Importin Alpha
 pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
           Importin Alpha (Ii Crystal Form, Grown At Low Ph)
          Length = 876

 Score = 32.0 bits (71), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA----QLNGQPK 215
           A+P  ++L+  PS  VR+ A W +G I    P   +  ++   L PLL      L+ +P+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465

Query: 216 LSMLRNATWTLSNF 229
           ++   N  W  S+ 
Sbjct: 466 VA--SNVCWAFSSL 477


>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
           Snurportin1 Ibb- Domain
 pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
           Snurportin1 Ibb-Domain Second Crystal Form
 pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
           Snurportin1 Ibb-Domain Second Crystal Form
 pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
           Importin Beta Bound To The Snurportin1 Ibb-Domain
           Trapped In The Same Crystallographic Asymmetric Unit
 pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
           Importin Beta Bound To The Snurportin1 Ibb-Domain
           Trapped In The Same Crystallographic Asymmetric Unit
          Length = 876

 Score = 32.0 bits (71), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA----QLNGQPK 215
           A+P  ++L+  PS  VR+ A W +G I    P   +  ++   L PLL      L+ +P+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465

Query: 216 LSMLRNATWTLSNF 229
           ++   N  W  S+ 
Sbjct: 466 VA--SNVCWAFSSL 477


>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
           Dehydrogenase, Complex With Amp
 pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
           Dehydrogenase, Complex With Amp
 pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
           Thermophilus, Ternary Complex
 pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
           Thermophilus, Ternary Complex
 pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
           Thermophilus, Ternary Complex
 pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
           Thermophilus, Ternary Complex
 pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
           Lactate-Dehydrogenase From Thermus Thermophillus
 pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
           Lactate-Dehydrogenase From Thermus Thermophillus
 pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
           Lactate-Dehydrogenase From Thermus Thermophillus
 pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
           Lactate-Dehydrogenase From Thermus Thermophillus
          Length = 310

 Score = 32.0 bits (71), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 24/121 (19%)

Query: 180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML-RNATWTLSNFCRGKPQPPF 238
           VW      GD    R +VL+ G     +AQ  G+ +L +L RNA               F
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAG-----VAQRPGETRLQLLDRNAQV-------------F 96

Query: 239 DQVSP----ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF-PRLAEF 293
            QV P    A P    L+ +N  +V+T   +ALS L  G       +++   F   LAE+
Sbjct: 97  AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEY 156

Query: 294 L 294
           L
Sbjct: 157 L 157


>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
 pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
           Saccharomyces Cerevisiae Nab2
          Length = 852

 Score = 32.0 bits (71), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
           +P+  +LL+     V+E  +  LG IA      + ++     L+P L Q     K +++R
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 417

Query: 221 NAT-WTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           + T WTLS +      QPP   + P +  L   I  ++  V   AC A + L +
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471


>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
           Complex With The Ibb-Domain Of Snurportin1 (1-65)
          Length = 762

 Score = 32.0 bits (71), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA----QLNGQPK 215
           A+P  ++L+  PS  VR+ A W +G I    P   +  ++   L PLL      L+ +P+
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 340

Query: 216 LSMLRNATWTLSNF 229
           ++   N  W  S+ 
Sbjct: 341 VA--SNVCWAFSSL 352


>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
           Cadherins
 pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
           Cadherins
          Length = 553

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 23/125 (18%)

Query: 108 PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWA---------LTNIASGTSEHTKV---- 154
           P++E   + V+PR V+ L++      +  AA           +  I  G +    +    
Sbjct: 394 PLQE---AAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARD 450

Query: 155 ------VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA 208
                 +     +P+FV+LLYS  ++++  A   L  +A D     D + ++G   PL+ 
Sbjct: 451 PMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDK-EAADAIDAEGASAPLME 509

Query: 209 QLNGQ 213
            L+ +
Sbjct: 510 LLHSR 514



 Score = 29.6 bits (65), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 108/291 (37%), Gaps = 53/291 (18%)

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDV 175
           P+ V  ++R        + A   T+I    S H +    +   G +P  V++L SP + V
Sbjct: 60  PQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESV 119

Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGL---VPLLAQ----------------------- 209
              A+  L N+       +  V    GL   VPLL +                       
Sbjct: 120 LFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQES 179

Query: 210 -----LNGQPK--LSMLRNAT-----WTLSNFCRGKPQPPFDQVSPA------LPALAHL 251
                 NG P+  + ++RN +     WT S   +     P ++  PA      + AL   
Sbjct: 180 KLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNK--PAIVEAGGMQALGKH 237

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           + SN   ++ +  W L  LSD      Q  +E+ V   L   L     +VL  A  T+ N
Sbjct: 238 LTSNSPRLVQNCLWTLRNLSDVATK--QEGLES-VLKILVNQLSVDDVNVLTCATGTLSN 294

Query: 312 IVTGDDMQTQCVIEYQALPCLLN-LLSGNYKKSIKKEACWTVSNITAGNRE 361
           +   +      V +   +  L++ +L    K  I + A   + ++T+ + E
Sbjct: 295 LTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPE 345


>pdb|3RQZ|A Chain A, Crystal Structure Of Metallophosphoesterase From
           Sphaerobacter Thermophilus
 pdb|3RQZ|B Chain B, Crystal Structure Of Metallophosphoesterase From
           Sphaerobacter Thermophilus
 pdb|3RQZ|C Chain C, Crystal Structure Of Metallophosphoesterase From
           Sphaerobacter Thermophilus
          Length = 246

 Score = 30.8 bits (68), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 13/62 (20%)

Query: 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           SD  R   +W+LG+I G  PR R+ V     LV +LA     P +S++ N  W     C 
Sbjct: 24  SDAGRVDDIWSLGDIVGYGPRPRECV----ELVRVLA-----PNISVIGNHDWA----CI 70

Query: 232 GK 233
           G+
Sbjct: 71  GR 72


>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
          Length = 876

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA----QLNGQPK 215
           A+P  ++L+  PS  VR+   W +G I    P   +  ++   L PLL      L+ +P+
Sbjct: 409 AMPTLIELMKDPSVVVRDTTAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465

Query: 216 LSMLRNATWTLSNF 229
           ++   N  W  S+ 
Sbjct: 466 VA--SNVCWAFSSL 477


>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
          Importin Alpha
          Length = 44

 Score = 30.0 bits (66), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 13 RNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR 49
          +NK K   D+ E RRRR +  VE+RK K+++ + K+R
Sbjct: 8  KNKGK---DSTEMRRRRIEVNVELRKAKKDDQMLKRR 41


>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
 pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
          Length = 462

 Score = 28.5 bits (62), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           A+P  ++L+  PS  VR+ A W +G I    P   +  ++   L PLL
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLL 453


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,182,059
Number of Sequences: 62578
Number of extensions: 625884
Number of successful extensions: 2294
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 133
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)