Query 009623
Match_columns 530
No_of_seqs 396 out of 2777
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 09:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 4.4E-76 1.5E-80 608.9 46.7 518 1-529 1-529 (529)
2 3ul1_B Importin subunit alpha- 100.0 3.4E-65 1.1E-69 524.5 47.6 490 28-529 13-510 (510)
3 4b8j_A Importin subunit alpha- 100.0 5.8E-65 2E-69 527.8 48.9 501 1-502 3-503 (528)
4 1wa5_B Importin alpha subunit; 100.0 2.9E-59 1E-63 484.8 42.0 491 8-500 13-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 1.1E-46 3.7E-51 383.1 47.5 426 74-500 21-448 (450)
6 3now_A UNC-45 protein, SD10334 100.0 6.2E-40 2.1E-44 343.2 30.3 367 74-447 378-787 (810)
7 3nmz_A APC variant protein; pr 100.0 6.9E-40 2.4E-44 325.3 28.8 368 70-445 29-453 (458)
8 1xm9_A Plakophilin 1; armadill 100.0 6.3E-39 2.2E-43 324.2 33.1 365 117-498 3-452 (457)
9 3tpo_A Importin subunit alpha- 100.0 1.9E-38 6.3E-43 327.7 36.0 368 72-443 118-498 (529)
10 3ul1_B Importin subunit alpha- 100.0 9.9E-39 3.4E-43 327.8 33.5 367 73-443 100-479 (510)
11 1jdh_A Beta-catenin; beta-cate 100.0 7.5E-37 2.6E-41 317.2 39.8 402 73-493 101-528 (529)
12 2z6h_A Catenin beta-1, beta-ca 100.0 2.1E-36 7.2E-41 320.2 41.1 405 73-498 98-550 (644)
13 3now_A UNC-45 protein, SD10334 100.0 1.5E-37 5.2E-42 325.2 29.6 403 75-494 332-781 (810)
14 1xm9_A Plakophilin 1; armadill 100.0 2.6E-37 9E-42 312.3 26.2 363 74-444 3-451 (457)
15 1wa5_B Importin alpha subunit; 100.0 1E-35 3.4E-40 308.2 36.4 368 73-444 130-512 (530)
16 2jdq_A Importin alpha-1 subuni 100.0 4.8E-36 1.6E-40 304.6 32.6 367 73-444 64-445 (450)
17 4b8j_A Importin subunit alpha- 100.0 8.3E-36 2.8E-40 308.9 34.4 367 73-444 117-498 (528)
18 3l6x_A Catenin delta-1; cateni 100.0 1.1E-35 3.7E-40 301.4 30.1 365 73-445 48-479 (584)
19 2z6g_A B-catenin; FULL-length, 100.0 1E-33 3.5E-38 304.1 43.6 405 73-498 234-686 (780)
20 3l6x_A Catenin delta-1; cateni 100.0 7.3E-35 2.5E-39 295.3 32.2 366 114-495 46-476 (584)
21 3nmz_A APC variant protein; pr 100.0 1.6E-34 5.4E-39 286.9 25.0 327 71-401 68-452 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 1.6E-33 5.4E-38 292.2 28.4 403 73-495 59-489 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 3.2E-32 1.1E-36 288.2 32.9 403 73-495 56-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 5.2E-32 1.8E-36 290.8 31.9 402 73-494 192-621 (780)
25 3nmw_A APC variant protein; AR 100.0 5.3E-30 1.8E-34 247.2 24.6 273 171-446 44-338 (354)
26 3nmw_A APC variant protein; AR 100.0 2.9E-30 1E-34 249.1 22.1 269 132-403 47-338 (354)
27 4hxt_A De novo protein OR329; 100.0 7.3E-27 2.5E-31 217.5 24.4 241 116-359 2-243 (252)
28 1xqr_A HSPBP1 protein; armadil 100.0 8.1E-27 2.8E-31 219.0 22.7 234 258-498 55-290 (296)
29 4hxt_A De novo protein OR329; 100.0 1.4E-26 5E-31 215.4 23.7 241 159-401 2-243 (252)
30 4db8_A Armadillo-repeat protei 100.0 5.5E-27 1.9E-31 218.4 20.7 239 116-357 12-251 (252)
31 4db8_A Armadillo-repeat protei 99.9 2.1E-26 7.1E-31 214.5 20.4 239 73-314 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 5.5E-24 1.9E-28 218.5 23.2 322 74-399 335-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 1.7E-22 5.7E-27 207.5 29.9 399 74-495 256-728 (778)
34 4db6_A Armadillo repeat protei 99.9 8.5E-23 2.9E-27 184.4 24.3 199 241-441 10-208 (210)
35 4db6_A Armadillo repeat protei 99.9 2.1E-22 7.2E-27 181.8 20.9 199 114-314 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 8.3E-22 2.9E-26 184.9 20.9 226 131-357 54-287 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 1.2E-20 4.1E-25 169.1 14.9 197 117-315 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 4.3E-20 1.5E-24 165.5 14.0 197 73-273 8-230 (233)
39 1b3u_A Protein (protein phosph 99.8 2.3E-17 7.9E-22 172.8 26.9 343 117-494 243-586 (588)
40 4fdd_A Transportin-1; heat rep 99.8 5.4E-18 1.9E-22 185.3 22.3 355 75-446 92-475 (852)
41 1b3u_A Protein (protein phosph 99.8 8E-17 2.8E-21 168.7 25.1 381 74-495 165-548 (588)
42 4fdd_A Transportin-1; heat rep 99.8 5.3E-17 1.8E-21 177.5 23.1 392 77-495 52-471 (852)
43 2vgl_B AP-2 complex subunit be 99.7 2.9E-16 1E-20 163.7 25.9 333 74-445 87-422 (591)
44 3grl_A General vesicular trans 99.7 1.7E-14 5.8E-19 144.6 34.2 415 73-499 60-554 (651)
45 1oyz_A Hypothetical protein YI 99.7 1.3E-15 4.5E-20 143.5 21.7 258 113-438 20-278 (280)
46 3grl_A General vesicular trans 99.7 2.1E-14 7.3E-19 143.9 30.9 410 73-495 21-503 (651)
47 2vgl_B AP-2 complex subunit be 99.7 4.8E-15 1.6E-19 154.6 27.0 332 73-444 49-384 (591)
48 1oyz_A Hypothetical protein YI 99.7 8.2E-15 2.8E-19 138.1 23.0 254 73-395 23-278 (280)
49 1w63_A Adapter-related protein 99.7 1.8E-14 6.3E-19 150.6 27.2 336 15-400 18-380 (618)
50 2bpt_A Importin beta-1 subunit 99.6 2.6E-14 9E-19 156.6 25.2 355 74-445 325-714 (861)
51 2bpt_A Importin beta-1 subunit 99.6 7.3E-14 2.5E-18 153.0 26.6 399 76-495 372-811 (861)
52 1qgr_A Protein (importin beta 99.6 9.7E-14 3.3E-18 152.3 25.2 400 74-494 322-826 (876)
53 1ibr_B P95, importin beta-1 su 99.6 7.3E-14 2.5E-18 141.5 20.9 390 74-495 2-437 (462)
54 1ibr_B P95, importin beta-1 su 99.6 1.9E-14 6.3E-19 145.9 16.4 362 74-446 36-441 (462)
55 1qgr_A Protein (importin beta 99.6 2.6E-13 8.8E-18 149.0 26.0 276 75-358 174-480 (876)
56 1w63_A Adapter-related protein 99.6 4E-13 1.4E-17 140.5 25.7 369 74-495 108-577 (618)
57 1u6g_C TIP120 protein, CAND1; 99.5 1.5E-12 5E-17 148.0 27.4 405 74-495 7-463 (1230)
58 3ltm_A Alpha-REP4; protein eng 99.5 6.6E-12 2.3E-16 112.7 20.1 188 158-401 18-205 (211)
59 3ltj_A Alpharep-4; protein eng 99.4 1.7E-11 5.8E-16 109.0 21.7 185 159-399 14-198 (201)
60 1u6g_C TIP120 protein, CAND1; 99.4 6.8E-12 2.3E-16 142.5 23.5 397 74-493 87-546 (1230)
61 3ltm_A Alpha-REP4; protein eng 99.4 8.8E-12 3E-16 111.8 19.1 188 115-359 18-205 (211)
62 2vgl_A Adaptor protein complex 99.4 1.4E-10 4.7E-15 120.9 29.6 370 19-442 23-433 (621)
63 3ltj_A Alpharep-4; protein eng 99.4 1.9E-11 6.4E-16 108.8 19.4 184 116-356 14-197 (201)
64 2vgl_A Adaptor protein complex 99.3 4.6E-10 1.6E-14 117.0 23.5 330 74-443 112-471 (621)
65 2db0_A 253AA long hypothetical 99.1 5E-09 1.7E-13 86.2 17.8 218 157-400 30-247 (253)
66 4ady_A RPN2, 26S proteasome re 99.1 1.8E-08 6.1E-13 106.3 24.6 273 74-402 393-679 (963)
67 4gmo_A Putative uncharacterize 99.1 3.4E-09 1.2E-13 111.9 18.4 217 114-356 33-257 (684)
68 3tjz_B Coatomer subunit gamma; 98.9 5.6E-08 1.9E-12 92.4 19.1 277 74-395 69-349 (355)
69 3b2a_A TON_1937, putative unch 98.9 5.6E-08 1.9E-12 83.8 17.1 226 242-493 32-259 (265)
70 2db0_A 253AA long hypothetical 98.9 7.1E-07 2.4E-11 73.7 20.0 217 199-443 30-247 (253)
71 4gmo_A Putative uncharacterize 98.8 1.4E-08 4.6E-13 107.3 12.6 196 242-442 34-258 (684)
72 1ho8_A Vacuolar ATP synthase s 98.8 1.6E-06 5.6E-11 84.1 25.7 322 158-494 76-475 (480)
73 3tjz_B Coatomer subunit gamma; 98.8 5.4E-08 1.9E-12 92.4 15.1 309 86-444 40-352 (355)
74 4ady_A RPN2, 26S proteasome re 98.8 1.2E-06 4E-11 92.7 25.4 270 118-443 394-677 (963)
75 2qk2_A LP04448P; mini spindles 98.8 9.5E-08 3.3E-12 87.3 14.1 186 204-400 18-206 (242)
76 2qk2_A LP04448P; mini spindles 98.8 4.1E-08 1.4E-12 89.8 11.0 186 162-357 18-205 (242)
77 3b2a_A TON_1937, putative unch 98.7 1.7E-06 5.7E-11 74.8 17.9 187 116-315 33-219 (265)
78 2qk1_A Protein STU2; STU2P, XM 98.6 3.5E-07 1.2E-11 83.5 12.7 194 163-357 20-220 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.5 6.2E-07 2.1E-11 81.8 12.4 192 205-399 20-220 (249)
80 1te4_A Conserved protein MTH18 98.5 2.7E-08 9.1E-13 81.3 1.9 120 284-439 11-130 (131)
81 1te4_A Conserved protein MTH18 98.5 1.9E-08 6.5E-13 82.2 1.0 121 242-397 11-131 (131)
82 4hat_C Exportin-1; heat repeat 98.5 6.1E-05 2.1E-09 82.6 27.9 340 84-445 206-621 (1023)
83 1ho8_A Vacuolar ATP synthase s 98.5 6.3E-05 2.2E-09 73.1 24.5 321 74-399 78-476 (480)
84 1wa5_C Importin alpha RE-expor 98.4 0.00023 7.7E-09 78.5 29.9 344 76-443 88-526 (960)
85 2iw3_A Elongation factor 3A; a 98.4 3.9E-05 1.3E-09 82.3 22.2 301 73-398 14-323 (986)
86 2x1g_F Cadmus; transport prote 98.4 0.00011 3.8E-09 81.3 26.7 331 88-443 204-616 (971)
87 3m1i_C Exportin-1; heat repeat 98.2 0.0006 2E-08 75.9 29.0 343 85-444 207-620 (1049)
88 1wa5_C Importin alpha RE-expor 98.2 7.5E-05 2.6E-09 82.3 21.5 258 132-399 376-670 (960)
89 2x19_B Importin-13; nuclear tr 98.2 0.00014 4.9E-09 80.3 22.5 340 126-496 459-847 (963)
90 2iw3_A Elongation factor 3A; a 98.2 0.00024 8.1E-09 76.3 22.6 296 164-494 19-323 (986)
91 3dad_A FH1/FH2 domain-containi 98.2 7.4E-05 2.5E-09 69.0 16.2 189 289-485 122-326 (339)
92 3dad_A FH1/FH2 domain-containi 98.2 7.2E-05 2.5E-09 69.1 16.1 186 246-432 121-326 (339)
93 2x1g_F Cadmus; transport prote 98.1 0.00015 5.1E-09 80.2 21.5 251 133-399 437-722 (971)
94 3ibv_A Exportin-T; karyopherin 98.1 1.8E-05 6.2E-10 86.6 13.1 303 84-402 204-569 (980)
95 2x19_B Importin-13; nuclear tr 98.1 0.0005 1.7E-08 75.9 24.3 331 88-444 217-601 (963)
96 3m1i_C Exportin-1; heat repeat 97.9 0.022 7.4E-07 63.4 32.3 316 117-446 195-573 (1049)
97 4hat_C Exportin-1; heat repeat 97.8 0.0034 1.2E-07 68.8 23.4 390 85-495 465-929 (1023)
98 3gjx_A Exportin-1; transport, 97.7 0.0099 3.4E-07 65.1 25.7 301 84-402 218-598 (1073)
99 3oc3_A Helicase MOT1, MOT1; re 97.7 0.00034 1.1E-08 68.5 12.0 258 71-395 172-432 (800)
100 4ffb_C Protein STU2; tubulin f 97.5 0.0019 6.4E-08 59.9 14.8 193 72-273 9-213 (278)
101 3ibv_A Exportin-T; karyopherin 97.5 0.0032 1.1E-07 68.9 18.3 307 128-446 205-570 (980)
102 4ffb_C Protein STU2; tubulin f 97.4 0.0042 1.4E-07 57.5 15.8 189 290-495 14-212 (278)
103 3c2g_A SYS-1 protein; beta-cat 97.3 0.02 6.8E-07 52.6 18.2 293 183-493 266-616 (619)
104 2of3_A ZYG-9; multifunctional 97.3 0.0038 1.3E-07 56.4 13.6 181 247-444 50-238 (266)
105 3gjx_A Exportin-1; transport, 97.3 0.055 1.9E-06 59.3 25.1 310 118-446 208-599 (1073)
106 2of3_A ZYG-9; multifunctional 97.2 0.009 3.1E-07 54.0 14.6 177 163-357 50-236 (266)
107 1upk_A MO25 protein; transfera 97.2 0.062 2.1E-06 49.6 20.0 202 279-493 72-281 (341)
108 1upk_A MO25 protein; transfera 97.1 0.024 8.2E-07 52.3 16.6 201 154-357 73-283 (341)
109 2fv2_A RCD1 required for cell 96.9 0.13 4.5E-06 45.4 18.7 187 256-445 14-227 (268)
110 3u0r_A Apoptosis inhibitor 5; 96.8 0.083 2.9E-06 51.2 17.8 149 171-339 40-189 (507)
111 3c2g_A SYS-1 protein; beta-cat 96.5 0.22 7.6E-06 45.8 17.6 179 261-442 261-473 (619)
112 1lrv_A LRV, leucine-rich repea 96.3 0.0035 1.2E-07 56.3 4.6 45 288-352 197-241 (244)
113 1lrv_A LRV, leucine-rich repea 96.3 0.0051 1.7E-07 55.2 5.7 140 163-394 102-241 (244)
114 3l9t_A Putative uncharacterize 96.2 0.2 6.8E-06 43.8 15.3 144 118-283 73-218 (240)
115 3oc3_A Helicase MOT1, MOT1; re 96.2 0.008 2.7E-07 59.1 7.0 160 131-313 242-403 (800)
116 3l9t_A Putative uncharacterize 96.1 0.14 4.6E-06 44.9 13.3 142 242-411 70-218 (240)
117 2fv2_A RCD1 required for cell 96.0 0.17 5.6E-06 44.7 13.6 141 91-233 74-226 (268)
118 3a6p_A Exportin-5; exportin-5, 96.0 0.79 2.7E-05 51.5 22.8 301 74-400 12-381 (1204)
119 3u0r_A Apoptosis inhibitor 5; 95.5 1 3.5E-05 43.7 17.9 123 214-356 40-162 (507)
120 2f31_A Diaphanous protein homo 95.3 0.48 1.6E-05 42.0 14.5 142 341-488 67-221 (233)
121 2f31_A Diaphanous protein homo 95.2 0.7 2.4E-05 41.0 15.1 141 91-233 19-182 (233)
122 3ebb_A Phospholipase A2-activa 95.0 0.98 3.4E-05 41.7 16.2 174 118-296 105-287 (304)
123 3a6p_A Exportin-5; exportin-5, 95.0 1.9 6.5E-05 48.4 21.4 296 123-443 19-381 (1204)
124 3ebb_A Phospholipase A2-activa 94.9 2.3 7.7E-05 39.3 18.4 185 288-491 106-302 (304)
125 3eg5_B Protein diaphanous homo 94.9 0.57 1.9E-05 45.0 14.6 161 318-485 101-284 (383)
126 3eg5_B Protein diaphanous homo 94.7 1.3 4.3E-05 42.6 16.4 157 76-234 69-249 (383)
127 1lsh_A Lipovitellin (LV-1N, LV 94.1 5.1 0.00017 44.2 21.9 172 203-403 393-580 (1056)
128 2bnx_A Diaphanous protein homo 93.8 2.5 8.6E-05 40.5 16.6 140 341-486 71-223 (386)
129 1lsh_A Lipovitellin (LV-1N, LV 93.4 7.3 0.00025 42.9 21.5 166 161-359 393-578 (1056)
130 3fga_B Serine/threonine-protei 92.9 3.9 0.00013 39.1 15.8 234 153-400 123-367 (403)
131 2bnx_A Diaphanous protein homo 92.7 4.8 0.00016 38.6 16.6 156 77-234 8-187 (386)
132 2npp_B PP2A, B subunit, serine 91.6 9.1 0.00031 37.2 16.9 236 151-400 154-400 (449)
133 3qml_C Protein SLS1, nucleotid 89.5 3.3 0.00011 37.6 11.0 134 300-442 43-189 (315)
134 1vdy_A Hypothetical protein (R 87.6 2.1 7.2E-05 34.1 7.5 76 414-499 50-134 (140)
135 3gs3_A Symplekin, LD45768P; he 87.0 16 0.00055 32.5 22.0 100 76-186 18-117 (257)
136 1x5b_A Signal transducing adap 86.7 2.2 7.6E-05 35.2 7.5 73 414-496 53-126 (163)
137 3o2t_A Symplekin; heat repeat, 86.6 4.9 0.00017 38.2 10.8 118 369-494 62-182 (386)
138 3qml_C Protein SLS1, nucleotid 86.6 8.1 0.00028 35.1 11.5 149 245-399 24-189 (315)
139 3g2s_A C-terminal fragment of 86.3 2 7E-05 34.7 7.0 74 371-444 49-128 (149)
140 3ldz_A STAM-1, signal transduc 85.1 2.2 7.4E-05 34.2 6.6 72 414-495 43-114 (140)
141 2p8q_B Snurportin-1; heat repe 85.0 0.73 2.5E-05 27.4 2.7 39 11-50 2-40 (40)
142 1mhq_A ADP-ribosylation factor 85.0 3.4 0.00011 33.4 7.7 71 371-441 39-115 (148)
143 3gs3_A Symplekin, LD45768P; he 84.8 7.7 0.00026 34.6 10.6 117 370-494 53-172 (257)
144 3o2t_A Symplekin; heat repeat, 84.7 28 0.00094 33.1 18.2 88 88-186 40-127 (386)
145 1juq_A ADP-ribosylation factor 84.3 3.8 0.00013 34.1 7.9 73 414-496 51-129 (171)
146 1mhq_A ADP-ribosylation factor 82.8 4.1 0.00014 32.9 7.3 74 414-497 39-118 (148)
147 3g2s_A C-terminal fragment of 82.6 4.2 0.00014 32.9 7.3 72 414-495 49-126 (149)
148 1juq_A ADP-ribosylation factor 81.4 3.5 0.00012 34.3 6.5 71 371-441 51-127 (171)
149 3ldz_A STAM-1, signal transduc 80.2 2.4 8.2E-05 34.0 5.0 73 371-443 43-115 (140)
150 1vsy_5 Proteasome activator BL 79.9 6.6 0.00023 42.8 9.8 186 161-357 135-365 (997)
151 1x5b_A Signal transducing adap 79.7 3 0.0001 34.4 5.5 71 371-441 53-124 (163)
152 2jak_A Serine/threonine-protei 75.3 19 0.00065 34.2 10.3 80 153-233 168-247 (392)
153 3zyq_A Hepatocyte growth facto 71.5 2.4 8.2E-05 37.2 3.0 74 73-146 45-118 (226)
154 3zyq_A Hepatocyte growth facto 71.2 12 0.0004 32.7 7.4 72 414-495 46-118 (226)
155 3ut4_A CTHE_2751, putative unc 70.6 7 0.00024 30.6 5.1 94 371-495 32-130 (134)
156 3fga_B Serine/threonine-protei 70.5 75 0.0026 30.2 17.6 228 242-496 128-367 (403)
157 1dvp_A HRS, hepatocyte growth 69.3 14 0.00049 32.0 7.6 72 414-495 43-115 (220)
158 1elk_A Target of MYB1; superhe 67.1 18 0.0006 29.5 7.2 72 414-495 54-130 (157)
159 3gae_A Protein DOA1; UFD3, CDC 66.3 22 0.00074 31.6 8.2 134 301-446 70-221 (253)
160 2npp_B PP2A, B subunit, serine 66.1 99 0.0034 30.0 18.4 241 111-365 157-407 (449)
161 3s4w_B Protein FACD2, fanconi 65.7 1.1E+02 0.0039 34.1 15.1 134 298-444 323-469 (1323)
162 1dvp_A HRS, hepatocyte growth 65.5 3.6 0.00012 35.9 2.9 74 73-146 42-115 (220)
163 3l3f_X Protein DOA1, DOA1/UFD3 65.0 33 0.0011 32.2 9.4 133 302-446 180-330 (362)
164 1vsy_5 Proteasome activator BL 64.8 32 0.0011 37.4 10.6 188 240-443 130-366 (997)
165 1vdy_A Hypothetical protein (R 63.0 24 0.00082 28.0 6.9 73 371-443 50-131 (140)
166 3pst_A Protein DOA1; protein d 62.9 43 0.0015 32.1 9.9 134 301-446 242-393 (425)
167 2b6c_A Hypothetical protein EF 61.9 77 0.0026 27.2 12.7 138 246-410 58-198 (220)
168 1wjt_A Transcription elongatio 60.9 11 0.00039 28.1 4.4 40 459-498 47-87 (103)
169 3s4w_B Protein FACD2, fanconi 58.6 1.2E+02 0.0042 33.9 13.7 141 250-397 407-547 (1323)
170 3jxy_A Alkylpurine DNA glycosy 57.9 94 0.0032 27.0 11.6 139 247-412 65-207 (232)
171 3pst_A Protein DOA1; protein d 56.0 33 0.0011 32.9 7.9 104 294-400 271-390 (425)
172 1elk_A Target of MYB1; superhe 55.5 20 0.0007 29.1 5.6 72 371-442 54-130 (157)
173 3l3f_X Protein DOA1, DOA1/UFD3 52.5 32 0.0011 32.3 7.0 103 295-400 209-327 (362)
174 3gae_A Protein DOA1; UFD3, CDC 51.5 55 0.0019 29.0 8.2 104 170-273 101-218 (253)
175 2jak_A Serine/threonine-protei 49.2 95 0.0032 29.4 9.7 72 114-187 172-244 (392)
176 2b6c_A Hypothetical protein EF 39.6 1.8E+02 0.0061 24.9 13.2 139 119-282 58-198 (220)
177 2xpp_A IWS1, ECU08_0440; trans 33.7 1.6E+02 0.0056 23.3 7.4 76 319-398 53-135 (145)
178 3vld_A DNA mismatch repair pro 33.4 3.5E+02 0.012 26.4 14.1 184 242-444 30-227 (500)
179 3rru_A TOM1L1 protein; structu 32.9 88 0.003 25.1 5.9 75 414-498 54-133 (152)
180 1pqv_S STP-alpha, transcriptio 31.4 77 0.0026 29.0 6.0 37 459-495 38-74 (309)
181 4atg_A TAF6; transcription, TF 30.7 2E+02 0.0068 24.2 7.9 112 159-271 40-161 (196)
182 4g3b_A Alpha4F3D; alpha helix, 28.7 62 0.0021 16.2 2.9 21 21-41 2-22 (26)
183 2xpp_A IWS1, ECU08_0440; trans 28.4 2.2E+02 0.0076 22.5 7.8 75 278-356 54-135 (145)
184 3rru_A TOM1L1 protein; structu 26.9 86 0.0029 25.2 4.8 73 371-443 54-131 (152)
185 4atg_A TAF6; transcription, TF 26.3 2.9E+02 0.0099 23.2 12.6 128 202-337 41-178 (196)
186 3gjx_B Snurportin-1; transport 25.6 17 0.00057 33.7 0.4 44 8-52 28-71 (365)
187 3nfq_A Transcription factor IW 24.9 2.8E+02 0.0097 22.6 7.7 79 317-399 66-151 (170)
188 2g7o_A Protein TRAM; four heli 24.8 70 0.0024 21.6 3.2 20 480-499 50-69 (70)
189 1vsy_4 Proteasome activator BL 22.7 3.5E+02 0.012 28.5 9.8 119 151-271 332-454 (799)
190 1inz_A EPS15-interacting porte 22.3 3E+02 0.01 21.9 7.9 72 415-495 61-140 (148)
191 3jxy_A Alkylpurine DNA glycosy 21.7 3.8E+02 0.013 22.9 12.3 140 120-284 65-207 (232)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=4.4e-76 Score=608.95 Aligned_cols=518 Identities=46% Similarity=0.748 Sum_probs=404.2
Q ss_pred CCCCCCC-CchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCC-CCccCCCCCchhhhcCCHHH
Q 009623 1 MSLRPNS-KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQ-PLANDVNAPGTAKKLENLPV 77 (530)
Q Consensus 1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 77 (530)
|+++++. .+++|+++||+ +++++|+|+||++++++|||+||++.+.|||+.....+. .++..............++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 7787776 67899999998 899999999999999999999999999999987442222 11221111111222247899
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009623 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (530)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 157 (530)
+++.++|+|++.++.|+..++++++.+.+++++.+++.|++|.|+++|..++++.++.+|+|+|+|++.++++.+..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999987666999999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC----chhHHHHHHHHhhhhccCC
Q 009623 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 158 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~----~~~~~~~a~~~L~~L~~~~ 233 (530)
.|++|.|+.+|.+++..+++.|+|+|+||+.+++.+|+.+...|++++|+.++.... ...+.+.++|++++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995322 2457889999999999987
Q ss_pred -CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009623 234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 234 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
+........+++|.|+.++.+++++++..++|+|++++....+..+.++..|+++.|+.+|.+.++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 5556667789999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009623 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 392 (530)
+.+++.....+++.|+++.|..+|.++ ++.++++|+|+|+|++.+++.+...+++.|++|.|+.++.+++++++.+|+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHH
Q 009623 393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE 472 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 472 (530)
+|+|++.+++++++.++++.|++++|+++|.++|++++..++++|.+|+..+++.. ..+.+...|+++||+++|+
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie 474 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIE 474 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTCHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-----ChHHHHHHHHHCCcHHHHH
Confidence 99999998899999999999999999999999999999999999999999887643 3577899999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhCCCCCCCC---CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009623 473 SLQTHDNAEIYEKSVKLLETYWLDDEDET---MPPGDASQPGFGFGGNGNPPAPSGGFNF 529 (530)
Q Consensus 473 ~l~~~~~~~v~~~a~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (530)
.||+|+|++||++|..||++||+.+++|+ .|++.+ ++|+|+.++ .++|+|||
T Consensus 475 ~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~f~f 529 (529)
T 3tpo_A 475 ALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS--EGFAFQVQD---GAPGTFNF 529 (529)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHC--------------------------------------
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCC--cccccCCCC---CCCCCCCC
Confidence 99999999999999999999998766554 576553 379998665 46789999
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.4e-65 Score=524.45 Aligned_cols=490 Identities=46% Similarity=0.753 Sum_probs=393.7
Q ss_pred hhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCC
Q 009623 28 RREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSP 107 (530)
Q Consensus 28 ~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~ 107 (530)
.|....++.|+++++....+.++...+.+.....+ ........-..++.+++.++|+|++.|+.|+..+|+++|.+++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~p 91 (510)
T 3ul1_B 13 PRGSGMLETAAALFERNHMDSPDLGTDDDDLAMAD-IGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91 (510)
T ss_dssp -----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred cCCcccHHHHHHHHHhhccCCccccCCccccchhh-hccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 34456677888888777777776654333321111 11111111247899999999999999999999999999998899
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009623 108 PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (530)
Q Consensus 108 ~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~ 187 (530)
+++.+++.|++|.|+++|+.++++.+|.+|+|+|+||++++++.+..+++.|++|.|+.+|.+++..+++.|+|+|+||+
T Consensus 92 pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa 171 (510)
T 3ul1_B 92 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 171 (510)
T ss_dssp CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987666899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhHhhcCChHHHHHhhcCCC----chhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHH
Q 009623 188 GDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTD 262 (530)
Q Consensus 188 ~~~~~~~~~i~~~~~i~~Ll~ll~~~~----~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~ 262 (530)
.+++.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.++.+++++++..
T Consensus 172 ~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~ 251 (510)
T 3ul1_B 172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 251 (510)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999994322 2457889999999999987 55566677899999999999999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch
Q 009623 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342 (530)
Q Consensus 263 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 342 (530)
++|+|++++....+..+.+...|+++.|+.+|.+.+..++..++++|+|++.+++..+..+++.|+++.|..+|.++ ++
T Consensus 252 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~ 330 (510)
T 3ul1_B 252 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KT 330 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SH
T ss_pred HHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CH
Confidence 99999999999888888899999999999999999999999999999999999999999999999999999999998 99
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009623 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 422 (530)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 422 (530)
.+++.|+|+|+|++.+++.+...+++.|+++.|+.++.+++++++++|+|+|+|++.+++.+++.++++.|++++|+++|
T Consensus 331 ~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL 410 (510)
T 3ul1_B 331 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC-
Q 009623 423 VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET- 501 (530)
Q Consensus 423 ~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~~- 501 (530)
+++|++++..++++|.+|++.+++.. ..+.++.+|+++||+++|+.||+|+|++||++|..||++||+.+++++
T Consensus 411 ~~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~ 485 (510)
T 3ul1_B 411 SAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQ 485 (510)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-------
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHhcc-----chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccc
Confidence 99999999999999999999887644 357789999999999999999999999999999999999999776654
Q ss_pred --CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009623 502 --MPPGDASQPGFGFGGNGNPPAPSGGFNF 529 (530)
Q Consensus 502 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (530)
.|++.+ ++|.|++++ .++++|||
T Consensus 486 ~~~~~~~~--~~~~~~~~~---~~~~~~~~ 510 (510)
T 3ul1_B 486 NVVPETTS--EGFAFQVQD---GAPGTFNF 510 (510)
T ss_dssp ------------------------------
T ss_pred ccCCCCCc--cccccCCCC---CCCCCCCC
Confidence 566543 479998766 57789999
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=5.8e-65 Score=527.77 Aligned_cols=501 Identities=80% Similarity=1.253 Sum_probs=404.2
Q ss_pred CCCCCCCCchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHH
Q 009623 1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVA 80 (530)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 80 (530)
|+++|+.++++|+++||++++++|+|+||+++.++|||+||++.+.|||++....+.. +............+.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~l~~lv~ 81 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAP-VPASAATGVDKKLESLPAMIG 81 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC-----------------------CHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccc-cccccccchhhhHHHHHHHHH
Confidence 6778877889999999999999999999999999999999999999999974322211 000111112223467999999
Q ss_pred hhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009623 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (530)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~ 160 (530)
.|.++++.++..|++.|+++++....++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+
T Consensus 82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~ 161 (528)
T 4b8j_A 82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161 (528)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence 99999999999999999999988755888999999999999999998765899999999999999988999999999999
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009623 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (530)
Q Consensus 161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 240 (530)
++.|+.+|.++++.+++.|+|+|++|+.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+......
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 241 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 99999999999999999999999999999888999999999999999999667789999999999999999887777778
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009623 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 320 (530)
..+++|.|+.++.+.++.++..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus 242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999999999999999999999888888889999999999999999999999999999999999999888
Q ss_pred HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009623 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
+.+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+++..+..+++.|+++.|+.++.+++++++..|+|+|+|++..
T Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 89999999999999998765789999999999999999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009623 401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 480 (530)
Q Consensus 401 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 480 (530)
++++...++++.|+++.|+.+|..++++++..++++|.+++..++......+...+.+...+++.||+++|+.|++|+++
T Consensus 402 ~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~ 481 (528)
T 4b8j_A 402 GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN 481 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCH
Confidence 78899999999999999999999999999999999999999988764432222356789999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCC
Q 009623 481 EIYEKSVKLLETYWLDDEDETM 502 (530)
Q Consensus 481 ~v~~~a~~il~~~~~~~~~~~~ 502 (530)
+++++|..++++||+.+++++.
T Consensus 482 ~v~~~a~~il~~~~~~e~~~~~ 503 (528)
T 4b8j_A 482 EIYEKAVKILEAYWMDEEDDTM 503 (528)
T ss_dssp HHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHCCCcccccc
Confidence 9999999999999998777663
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.9e-59 Score=484.84 Aligned_cols=491 Identities=54% Similarity=0.825 Sum_probs=424.5
Q ss_pred CchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcccc---CCCCCccCC---CCCchh-hhcCCHHHH
Q 009623 8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ---NQQPLANDV---NAPGTA-KKLENLPVM 78 (530)
Q Consensus 8 ~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~---~~~~~~~~~---~~~~~~-~~~~~l~~l 78 (530)
.++.|++.||+ + ++++|+|+||++..++|||+||++.+.|||+.... .+..++.+. ...... ...+.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 92 (530)
T 1wa5_B 13 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM 92 (530)
T ss_dssp CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred chHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHH
Confidence 56789999999 8 89999999999999999999999999999997532 111001000 011110 122579999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009623 79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (530)
Q Consensus 79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 158 (530)
+..|+++++..+..|+..|+++++....+++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 172 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 172 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence 99999999999999999999999876567788899999999999999987339999999999999999888999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCC
Q 009623 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237 (530)
Q Consensus 159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~ 237 (530)
|+++.|+.+|.++++.+++.|+|+|++|+.+.+..++.+...|+++.|+.++ .+.+..++..++|+|++|+... +...
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999999999999888999999999999999999 5588999999999999999987 6667
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009623 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 317 (530)
.....+++|.|+.++.+.++.++..++|+|++++...+.....+++.|+++.|+.+|.+.++.++..|+++|++++.+++
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 77789999999999999999999999999999998888778888899999999999999999999999999999999988
Q ss_pred hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009623 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++..++.+++.|+++.|+.++.+++++++..|+|+|+|+
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888889999999999999998 999999999999999999899999999999999999999999999999999999999
Q ss_pred hcCCCH--HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh
Q 009623 398 TSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ 475 (530)
Q Consensus 398 ~~~~~~--~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 475 (530)
+..+.+ +...++++.|+++.|+.++...++.++..++++|.+++..++..........++++..|.+.||+++|..|+
T Consensus 411 ~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~ 490 (530)
T 1wa5_B 411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 490 (530)
T ss_dssp HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG
T ss_pred HhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH
Confidence 987666 888999999999999999999999999999999999998876532110012466899999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCC
Q 009623 476 THDNAEIYEKSVKLLETYWLDDEDE 500 (530)
Q Consensus 476 ~~~~~~v~~~a~~il~~~~~~~~~~ 500 (530)
+|++++|++.|..+|++||..+++|
T Consensus 491 ~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 491 QNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp GCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred cCCCHHHHHHHHHHHHHHCCccccc
Confidence 9999999999999999999876654
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.1e-46 Score=383.08 Aligned_cols=426 Identities=59% Similarity=0.938 Sum_probs=385.6
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.++.+++.++++++.++..|+..|+++++...++..+.++.. |++|.|+++|.+++++.++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 378999999999999999999999999875446677888887 9999999999988349999999999999999888888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009623 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..+..+...|+++.++.++..+.+..++..++|+|++++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999998888999999999999999995457899999999999999987
Q ss_pred C-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009623 233 K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 233 ~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n 311 (530)
. +........+++|.|+.++.++++.++..++|+|.+++...++....+...|+++.|+.++.+.++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 555566668999999999999999999999999999998877777888889999999999999999999999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHH
Q 009623 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAA 391 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 391 (530)
++.+.+...+.+++.|+++.|+.++.++ ++.+|..|+|+|+|++.+++...+.+++.|+++.|+.++.++++++|..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9998888888888999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHH
Q 009623 392 WAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI 471 (530)
Q Consensus 392 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 471 (530)
|+|+|++..++++..+.+++.|+++.|+.+++.++++++..++++|.+++..++..........++|...|.+.||+++|
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 419 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKI 419 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHH
Confidence 99999998777888899999999999999999999999999999999999877653211111245789999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCCCCC
Q 009623 472 ESLQTHDNAEIYEKSVKLLETYWLDDEDE 500 (530)
Q Consensus 472 ~~l~~~~~~~v~~~a~~il~~~~~~~~~~ 500 (530)
..|++|++.++++.|..+|++||+.++++
T Consensus 420 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 420 EFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999999877654
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=6.2e-40 Score=343.16 Aligned_cols=367 Identities=15% Similarity=0.125 Sum_probs=318.0
Q ss_pred CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh-
Q 009623 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS- 149 (530)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~- 149 (530)
.++.++++|.++ |++++..|++.|..+... .+....++ +.|++|.|++++++++ +.+++.|+|+|+||+.+++
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence 367788888887 899999999999998644 34444444 6899999999999987 8999999999999998652
Q ss_pred ----------------------------hh---HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh
Q 009623 150 ----------------------------EH---TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (530)
Q Consensus 150 ----------------------------~~---~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 198 (530)
.. .+.+++.|++|.|+.+|+++++.++++|+|+|+||+.+. .+|..+.
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv 533 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVV 533 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence 11 267889999999999999999999999999999999764 4899999
Q ss_pred hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC-h--hhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCC
Q 009623 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-F--DQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGT 274 (530)
Q Consensus 199 ~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~-~--~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~ 274 (530)
+.|++++|+.++ .+.+...++.|+|+|.+|+....... + ....+++|.|+.+|.++. ......++|+|.||+..+
T Consensus 534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999 66778899999999999997642111 1 123568999999998653 344578999999999998
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009623 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
++..+.+++.|+++.|+.++.++++.++..|+++++|++.+.+.+.+.+...|.++.|+.++.++ +..++++|+|+|+|
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan 691 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999997665544442379999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC---ChHHH
Q 009623 355 ITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP---DPRIV 430 (530)
Q Consensus 355 l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~---~~~v~ 430 (530)
++.+++.+++.+++ .|+++.|+.++.+++.++++.|+|+|.|++.+ +.++..++.+.|++++|+.+++.+ +++++
T Consensus 692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~ 770 (810)
T 3now_A 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770 (810)
T ss_dssp HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHH
Confidence 99988899999998 89999999999999999999999999999985 578899999999999999999755 78999
Q ss_pred HHHHHHHHHHHhhhhhh
Q 009623 431 TVCLEGLENILKVGEAE 447 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~~ 447 (530)
..++++|.++++++.-.
T Consensus 771 e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 771 EVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 99999999999988653
No 7
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=6.9e-40 Score=325.31 Aligned_cols=368 Identities=18% Similarity=0.166 Sum_probs=295.6
Q ss_pred hhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcH-HHHHHcCCHHHHHHhhcCCCC-----------HHHHHHH
Q 009623 70 KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDY-----------PQLQFEA 137 (530)
Q Consensus 70 ~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~v~~Lv~ll~~~~~-----------~~i~~~a 137 (530)
.+++.++.++..+.+.|++. ..+.|..+ +.+++. ..+++.|++|.|+++|+..+. ++++.+|
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~---~~~~ll~~---~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKDD---MSRTLLAM---SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp ----------------CCHH---HHHHHHHH---HSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHH---HHHHHHHH---HcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 35578899999999888873 33334433 334444 788999999999999997432 7999999
Q ss_pred HHHHHHHhcCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHhhhCCCchh
Q 009623 138 AWALTNIASGTSEHTKVVIDHGAV----------PIFVKLLYSPS--DD-----VRE-------QAVWALGNIAGDSPRC 193 (530)
Q Consensus 138 ~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----~~~-------~a~~~L~nl~~~~~~~ 193 (530)
+|+|+||+.+.++..+...+.|++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +.+
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~ 181 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH 181 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence 999999999999999988888888 66777776642 12 444 999999999776 779
Q ss_pred hhhHhhcCChHHHHHhhcC----------CCchhHHHHHHHHhhhhccCCCCCChhh--hhchHHHHHHhhcCCChhHHH
Q 009623 194 RDLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVLT 261 (530)
Q Consensus 194 ~~~i~~~~~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~~ 261 (530)
|+.+.+.|++++|+.++.. +.++.+++.|+|+|.|||.+++...... ..|++|.|+.+|.+++++++.
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 9999999999999999931 2357889999999999998864333222 467799999999999999999
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHHHHhhcC
Q 009623 262 DACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSG 338 (530)
Q Consensus 262 ~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~ 338 (530)
.++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+++.....+. ..|+++.|+.+|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999985 566778888999999999975 556889999999999999986655444555 78999999999998
Q ss_pred CCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009623 339 NYKK---SIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 412 (530)
Q Consensus 339 ~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 412 (530)
..+. .+++.|+|+|.|++. +++++++.+.+.|+++.|+.+|.+++..++++|+|+|.|++.. ++++...+++.
T Consensus 342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~ 420 (458)
T 3nmz_A 342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDM 420 (458)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence 7222 499999999999997 7889999999999999999999999999999999999999975 67899999999
Q ss_pred CChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009623 413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~ 445 (530)
|+++.|+++|.++++.++..++++|.+|+...+
T Consensus 421 G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 421 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp THHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999997653
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6.3e-39 Score=324.17 Aligned_cols=365 Identities=19% Similarity=0.209 Sum_probs=311.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009623 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
.+|.|+.+|.+++ +.++..|+++|.+++.+++..+..+++.|++|.|+++|+++++.++..|+|+|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999998 899999999999999877788889999999999999999999999999999999999988889999
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--------C--------CChhHH
Q 009623 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--------S--------NDDEVL 260 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~d~~v~ 260 (530)
+.+.|++++|+++|..+.+.++++.++|+|+||+........... |++|.|+.++. + .+..+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995478899999999999999998443333444 99999999993 2 356777
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CCchhHHHHHHHHhHhhcC------------------
Q 009623 261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG------------------ 315 (530)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~~~~~a~~~L~nl~~~------------------ 315 (530)
..++|+|.|++.. ++....+.+. |+++.|+.+|.+ .+..+...++.+|.|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6777888887 999999999985 4567888899999988621
Q ss_pred --------------------------------CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 009623 316 --------------------------------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-- 361 (530)
Q Consensus 316 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 361 (530)
.+...+.+++.|+++.|+.+|.++.++.+++.|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1223445667788999999998775789999999999999986533
Q ss_pred -HH-HHHH-HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh------HHHHH
Q 009623 362 -QI-QAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP------RIVTV 432 (530)
Q Consensus 362 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~------~v~~~ 432 (530)
.+ +..+ +.|++|.|+++|.+++.+++++|+|+|.|++.+ .....++..|++++|+++|...++ +++..
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 23 4445 589999999999999999999999999999984 244566777899999999987643 68889
Q ss_pred HHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCCC
Q 009623 433 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 433 al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~~~~~ 498 (530)
++++|.+++..... +...+.++||++.|.+|+.|. ++++++.|..+|..||.+.+
T Consensus 397 ~l~~l~ni~~~~~~-----------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCHH-----------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999865433 578889999999999999999 99999999999999998654
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.9e-38 Score=327.67 Aligned_cols=368 Identities=25% Similarity=0.368 Sum_probs=327.2
Q ss_pred cCCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009623 72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 72 ~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
.+.+|.|++.|.+ +++.+|..|+++|.++++.. ......+++.|++|.|+.++.+++ +.++..|+|+|+||+.++++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence 3789999999974 56899999999999999874 556678889999999999999998 99999999999999998899
Q ss_pred hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009623 151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~ 225 (530)
.+..+++.|+++.|+.+|..++ ..+...++|+|++++.+...........++++.|+.++ .+.+++++..++|+
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence 9999999999999999997643 45788999999999987765555555677899999999 88899999999999
Q ss_pred hhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHH
Q 009623 226 LSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (530)
Q Consensus 226 L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~ 304 (530)
|++++..... .......+++|.|+.++.+++..++..++++|++++..++.....+++.|+++.|+.+|.++++.++..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 9999987632 223445789999999999999999999999999999988888888999999999999999999999999
Q ss_pred HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCc
Q 009623 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAE 383 (530)
Q Consensus 305 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~ 383 (530)
|+|+|+|++.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.|
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999 99999999999999997 67889999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcC-----CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009623 384 FDIKKEAAWAISNATSG-----GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 384 ~~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~ 443 (530)
++++..++++|.|+... ........+.+.|+++.|..+..+++.++...|..+|.+.+..
T Consensus 434 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 434 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999742 2233445566889999999999999999999999988887643
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=9.9e-39 Score=327.78 Aligned_cols=367 Identities=25% Similarity=0.376 Sum_probs=326.5
Q ss_pred CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009623 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.+|.|+++|.+ +++.+|..|+++|.++++++ .+..+.+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 689999999985 56899999999999999874 567788899999999999999988 999999999999999988999
Q ss_pred HHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009623 152 TKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L 226 (530)
+..+.+.|+++.|+.++..++ ..+...++|+|++++.+...........++++.|++++ .+.+.+++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998743 35688999999999987765555555677899999999 888999999999999
Q ss_pred hhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009623 227 SNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (530)
Q Consensus 227 ~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a 305 (530)
++|+...... ......+++|.|+.++.+.+..++..++++|++++..++.....+++.|+++.|+.+|.+++..++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 9999875322 234457899999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009623 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 306 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
+|+|+|++.++..+...+++.|+++.|+.++.++ +..+|++|+|+|+|++. ++.+++..+++.|+++.|+.+|.+.|+
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999998 688899999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCC-----CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009623 385 DIKKEAAWAISNATSGG-----THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~ 443 (530)
+++..++++|.|+...+ .......+.+.|+++.|..+..+++.++...|..+|.+.+..
T Consensus 416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999997521 234455566889999999999999999999999998887744
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=7.5e-37 Score=317.16 Aligned_cols=402 Identities=18% Similarity=0.199 Sum_probs=341.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009623 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.++.+++.+.++++.++..|++.|.+++... ......+.+.|++|.|++++.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 68999999999999999999999999998774 455667778999999999999987 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009623 153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
..+.+.|+++.|+.++++. ....+..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999764 456777889999999865 45788889999999999999 66689999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHH
Q 009623 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV 309 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a~~~L 309 (530)
..+.. ....+++|.|+.++.+.+++++..++|+|++++..+++....+.+.|+++.|+.++.+ .++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 2346899999999999999999999999999999888788889999999999999976 3478999999999
Q ss_pred hHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009623 310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386 (530)
Q Consensus 310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 386 (530)
+|++.+++. ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.+.. ....+.+.|+++.|+.++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999886543 345778899999999999988346999999999999998654 4478889999999999999888999
Q ss_pred HHHHHHHHHH--hhcCC------------------CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009623 387 KKEAAWAISN--ATSGG------------------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 387 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~ 446 (530)
|++|+|++.| +..++ .++....+.+.|+++.|+.++.++++.++..+.++|.++....
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~-- 491 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-- 491 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--
Confidence 9988887777 22222 3455567889999999999999999999999999999986432
Q ss_pred hhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009623 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
.++..+.+.||++.|..++.|+|++|+..|..++.++
T Consensus 492 ----------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 ----------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp ----------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2578889999999999999999999999999999864
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=320.19 Aligned_cols=405 Identities=19% Similarity=0.220 Sum_probs=346.3
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009623 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.++.+++.|.++++.++..|+++|.++++.. ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 68899999999999999999999999998874 456667778999999999999987 8889999999999998889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009623 153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
..+.+.|+++.|+.++.+. ...++..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999874 467889999999999864 45788999999999999999 66789999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC--chhHHHHHHHH
Q 009623 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALRTV 309 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~~~~~a~~~L 309 (530)
..+.. ....+++|.|+.++.+.+++++..++|+|++++...+.....+.+.|+++.|+.++.+.+ +.++..|+++|
T Consensus 254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 76332 334689999999999999999999999999999988888888999999999999998743 78999999999
Q ss_pred hHhhcCCch--h-hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009623 310 GNIVTGDDM--Q-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386 (530)
Q Consensus 310 ~nl~~~~~~--~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 386 (530)
++++...+. . ...+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+... ...+++.|+++.|++++.++++++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence 999975442 2 334778899999999999873479999999999999987544 478889999999999998865555
Q ss_pred HH----------------------HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 387 KK----------------------EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 387 ~~----------------------~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
|+ .++.+|.+++. +......+.+.|+++.|+.+|.+.++.++..++++|.++....
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~ 488 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 488 (644)
T ss_dssp TTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH
T ss_pred hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH
Confidence 55 45555555555 3355567789999999999999999999999999999987432
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHH------------------HHH--HHHHHHHhCCCCC
Q 009623 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI------------------YEK--SVKLLETYWLDDE 498 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v------------------~~~--a~~il~~~~~~~~ 498 (530)
.++..+.+.|+++.|..++.+++++| |.. +..+++.||..+.
T Consensus 489 ------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 489 ------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp ------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred ------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 15788999999999999999999999 444 6778899997653
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-37 Score=325.17 Aligned_cols=403 Identities=15% Similarity=0.137 Sum_probs=332.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCC-CCcHHHHHH---cCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCC
Q 009623 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIR---SGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~---~g~v~~Lv~ll~~~--~~~~i~~~a~~~L~~l~~~~ 148 (530)
++.|+..++++++.++..|+..|.++.+... .+....+-+ ..+++.|+++|.++ + ++++..|+|+|.+++. .
T Consensus 332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~ 409 (810)
T 3now_A 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-D 409 (810)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-S
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-C
Confidence 4777777777777788888888888875321 111111111 23477899999887 5 8999999999999999 5
Q ss_pred hhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-----------------------------hhh---h
Q 009623 149 SEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-----------------------------RCR---D 195 (530)
Q Consensus 149 ~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-----------------------------~~~---~ 195 (530)
++.+..++ +.|++|.|+.+|++++..++..++|+|+||+.+.+ ..+ +
T Consensus 410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~ 489 (810)
T 3now_A 410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT 489 (810)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence 66666666 57999999999999999999999999999997542 122 5
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009623 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
.+++.|+++.|+.++ .++++.+++.++|+|.||+.+.+........|++|.|+.++.+.++..+..++|+|++++...+
T Consensus 490 ~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 490 VLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence 678899999999999 7889999999999999999765555556678999999999999999999999999999985433
Q ss_pred HHHH--HHHHhCcHHHHHHhhCCCCc-hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009623 276 DKIQ--AVIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 276 ~~~~--~~~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
.... .....++++.|+.+|.++.. ..+..|+++|+||+.+++...+.+++.|+++.|..++.++ ++.+++.|+|+|
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L 647 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL 647 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 2111 00113689999999987644 3456899999999999888888899999999999999998 999999999999
Q ss_pred HHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChHHH
Q 009623 353 SNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIV 430 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~v~ 430 (530)
+|++.+. +....+++ .|.++.|+.++.+++..+|++|+|+|.|++.+ ++..++.+++ .|+++.|+.+|.+++.+++
T Consensus 648 ~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq 725 (810)
T 3now_A 648 CNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQ 725 (810)
T ss_dssp HHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred HHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence 9999865 45555554 78999999999999999999999999999986 5678899998 8999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC---CCHHHHHHHHHHHHHhC
Q 009623 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH---DNAEIYEKSVKLLETYW 494 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~v~~~a~~il~~~~ 494 (530)
..++++|.++...+.. ....+.+.|+++.|..|... .+.++++.|...|+...
T Consensus 726 ~~A~~aL~NL~~~s~e-----------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 726 HRGIVIILNMINAGEE-----------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHHHHHTTCHH-----------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHH-----------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 9999999999985432 47888899999999999644 48999999999998764
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.6e-37 Score=312.30 Aligned_cols=363 Identities=15% Similarity=0.174 Sum_probs=303.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+|.++..|.+++++++..|+++|++++... .+....+++.|++|.|+++|.+++ +.++..|+|+|.|++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 6799999999999999999999999997552 344558889999999999999887 99999999999999998899999
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--------CC-------Cchh
Q 009623 154 VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQ-------PKLS 217 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--------~~-------~~~~ 217 (530)
.+++.|++|.|+++|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|++++. .. .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 78899999999999999988 568888888 99999999992 11 3567
Q ss_pred HHHHHHHHhhhhccCCCCCChhhhh-chHHHHHHhhcC------CChhHHHHHHHHHHHhccCC----------------
Q 009623 218 MLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHS------NDDEVLTDACWALSYLSDGT---------------- 274 (530)
Q Consensus 218 ~~~~a~~~L~~L~~~~~~~~~~~~~-~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~---------------- 274 (530)
+++.++|+|+|||..+......... |++|.|+.++.+ .+..+.++++++|.+++...
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 8889999999999873222223333 999999999985 46678889999998886321
Q ss_pred ----------------------------------hHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCchh
Q 009623 275 ----------------------------------NDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 275 ----------------------------------~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~ 319 (530)
+...+.+++.++++.++.+|.+. ++.+++.|+|+|+|++.++...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 01122344557788899998764 6889999999999999877543
Q ss_pred h----HHHh-hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch------hHHH
Q 009623 320 T----QCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF------DIKK 388 (530)
Q Consensus 320 ~----~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~~ 388 (530)
. +.++ +.|++|.|+.+|.++ +.+++++|+|+|+|++.+. ..+.++..++++.|+++|..+++ ++..
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 3334 689999999999999 9999999999999998853 45567777899999999988743 6888
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhhh
Q 009623 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~~ 444 (530)
.++++|.|+..+. +++...+.+.|+++.|+.++.++ ++++...|.++|.+++.+.
T Consensus 396 ~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 396 SACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 9999999999864 57888888999999999999999 8999999999999887543
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1e-35 Score=308.21 Aligned_cols=368 Identities=24% Similarity=0.335 Sum_probs=327.0
Q ss_pred CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009623 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.++.+++.|.++ ++.++..|+++|.++++.. ......+++.|+++.|+.+|.+++ +.++..|+|+|++++..++..
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 6899999999987 8999999999999998763 345667788999999999999887 999999999999999988889
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009623 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..++..|+++.|+.++.+.+..++..++|+|++|+.+...........++++.|+.++ .+.+..++..++|+|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999998999999999999999977622344556678999999999 77789999999999999998
Q ss_pred CCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009623 232 GKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 232 ~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 310 (530)
..+. .......+++|.|+.++.+.++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7532 222334589999999999999999999999999999888888888889999999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CH--HHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009623 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR--EQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
+++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ .+ +....+++.|+++.|+.++.++++.++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99998888888888999999999999988 999999999999999984 55 788889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
..|+++|.+++..+.. ..+..+.+.|+++.|..++.++++.+...+..+|.+++...
T Consensus 446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999875321 24567788999999999999999999999999999888653
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=4.8e-36 Score=304.62 Aligned_cols=367 Identities=25% Similarity=0.317 Sum_probs=324.4
Q ss_pred CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009623 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.++.+++.+.++ ++.++..|+++|.++++.. .+....+++.|++|.|++++.+++ +.++..|+++|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 4689999999988 8999999999999998763 345667778999999999999987 999999999999999988889
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009623 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
+..+++.|+++.|+.++.+ .+..++..++|+|++++.+. +..+..+ ..++++.|+.++ .+.+..++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999986 78999999999999999765 4333333 378999999999 678899999999999999
Q ss_pred ccCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009623 230 CRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 230 ~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~ 308 (530)
+...+ ........+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.++.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 98652 22233346899999999999999999999999999999888777778888999999999999999999999999
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009623 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
|++++.+++...+.+++.|+++.|+.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999988 999999999999999985 78888889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
..|+++|.+++..+.. ..+..+.+.|+++.|..++.++++.++..++.+|.+++...
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999875322 24567778899999999999889999999999999988543
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=8.3e-36 Score=308.90 Aligned_cols=367 Identities=24% Similarity=0.326 Sum_probs=327.5
Q ss_pred CCHHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009623 73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.++.|++.|.+++ +.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 68999999999877 999999999999998763 456677888999999999999987 999999999999999988889
Q ss_pred HHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009623 152 TKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
+..+...|+++.|+.+| .+.++.++..++|+|++++...+.. ......++++.|+.++ .+.+..++..++|+|++++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 5688999999999999999876533 3445678999999999 7889999999999999999
Q ss_pred cCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHH
Q 009623 231 RGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRT 308 (530)
Q Consensus 231 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~ 308 (530)
...+.. ......+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 775322 2334568999999999999999999999999999998888888899999999999999998 99999999999
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009623 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
|+|++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.++.+++++++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999998888888899999999999999998 999999999999999985 78999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
..++++|.+++..+.. .....+.+.|+++.|..+..++++++...+..++.+++...
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999874322 35677778899999999999999999999999988877543
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.1e-35 Score=301.41 Aligned_cols=365 Identities=18% Similarity=0.194 Sum_probs=303.5
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Chhh
Q 009623 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~-~~~~ 151 (530)
..++.++++|.++++.+|..|+++|++++... .+....+++.|+||.|+++|.+++ +.++..|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 48899999999999999999999999998754 567778889999999999999988 99999999999999985 6899
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-----------------CC
Q 009623 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-----------------GQ 213 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-----------------~~ 213 (530)
+..+++.|+|+.|+.+|.+ .+.++++.++++|+||+.. +..+..+.. +++++|++++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999987 6789999999999999985 457777775 57999999872 12
Q ss_pred CchhHHHHHHHHhhhhccCCCC-CChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccCChHH--------
Q 009623 214 PKLSMLRNATWTLSNFCRGKPQ-PPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDGTNDK-------- 277 (530)
Q Consensus 214 ~~~~~~~~a~~~L~~L~~~~~~-~~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~~~~-------- 277 (530)
.+..++.+++|+|.||+...+. ..... ..|+++.|+.++.+ .+...+++++|+|.||+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3679999999999999987633 22222 36778899999874 46788999999999998652111
Q ss_pred -----------------HHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchh----hHHHhhcCchHHHHHh
Q 009623 278 -----------------IQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQ----TQCVIEYQALPCLLNL 335 (530)
Q Consensus 278 -----------------~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~----~~~~~~~~~l~~L~~l 335 (530)
+..+.+.++++.++.+|. +.++.+++.|+++|.|++.+.... ...+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 111223355778889995 467899999999999999876432 2234467899999999
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--------chhHHHHHHHHHHHhhcCCCHHHHH
Q 009623 336 LSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--------EFDIKKEAAWAISNATSGGTHEQIK 407 (530)
Q Consensus 336 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~ 407 (530)
|.++ +..+++.|+|+|+||+.+.. .+..+..|++|.|+.+|.++ ..++...|+++|.|++.. ++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9999 99999999999999998643 23455789999999999876 357899999999999976 678999
Q ss_pred HHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHhhhh
Q 009623 408 FLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 408 ~l~~~~~l~~L~~lL~~~--~~~v~~~al~~l~~ll~~~~ 445 (530)
.+.+.|+++.|+.++.+. .+.++..|.++|.++..+.+
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 999999999999999986 78899999999999986543
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1e-33 Score=304.09 Aligned_cols=405 Identities=19% Similarity=0.212 Sum_probs=341.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009623 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 67899999999999999999999999998774 455566668999999999999877 8999999999999998889999
Q ss_pred HHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009623 153 KVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
..+++.|+++.|+.++++.+ ...+..++.+|.+++... ..+..+...|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998754 556778899999999754 4788888999999999999 67788999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-C-chhHHHHHHHH
Q 009623 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-S-PSVLIPALRTV 309 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~-~~~~~~a~~~L 309 (530)
..+. .....+++|.|+.++.+.++.++..++|+|++++...+.....+++.|+++.|+.+|.+. + ..++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 223468999999999999999999999999999998888888899999999999999863 3 38999999999
Q ss_pred hHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchh-
Q 009623 310 GNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD- 385 (530)
Q Consensus 310 ~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~- 385 (530)
++|+...... ...+...++++.|+.+|.++..+.+++.|+|+|+|++.+. .....+.+.|+++.|+.++.+++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 9998765432 3467788999999999998834599999999999999864 4447788999999999999876544
Q ss_pred ---------------------HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 386 ---------------------IKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 386 ---------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
++..++.+|.+++. +++....+.+.|+++.|+.+|.+.++.++..++.+|.++....
T Consensus 547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 624 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 624 (780)
T ss_dssp HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence 45566667777765 4566677889999999999999999999999999999987432
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHH--------------------HHHHHHHhCCCCC
Q 009623 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK--------------------SVKLLETYWLDDE 498 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~--------------------a~~il~~~~~~~~ 498 (530)
.++..|.+.|+++.|..|+.+++++|+.. +..++..||..+.
T Consensus 625 ------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~ 686 (780)
T 2z6g_A 625 ------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 686 (780)
T ss_dssp ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC-----
T ss_pred ------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCC
Confidence 25888999999999999999999999544 5567777776543
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=7.3e-35 Score=295.30 Aligned_cols=366 Identities=18% Similarity=0.210 Sum_probs=303.7
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-Cch
Q 009623 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPR 192 (530)
Q Consensus 114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~ 192 (530)
..+.+|.|+++|.+++ +.++..|+++|.+++.++.+.+..+++.|+||.|+++|.+++..+++.|+|+|.||+.+ ++.
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 3578999999999988 99999999999999998999999999999999999999999999999999999999985 678
Q ss_pred hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc------------------C
Q 009623 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------------------S 254 (530)
Q Consensus 193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~------------------~ 254 (530)
.+..+.+.|++++|+.+|....+.++++.++++|++|+..... ......+++|.|+.++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~-k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI-KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG-HHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-hHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999996556889999999999999986433 33334678999998761 2
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CCchhHHHHHHHHhHhhcCCc----------
Q 009623 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDD---------- 317 (530)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~~~~~a~~~L~nl~~~~~---------- 317 (530)
.++.++.++.++|.||+...++..+.+++. |+++.|+.++.+ .+...++.|+++|.||+....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367999999999999999887766777764 667899999864 466789999999999986521
Q ss_pred ---------------hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HhCcHHHHHHH
Q 009623 318 ---------------MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR---EQIQAVI-EANIIGPLVAL 378 (530)
Q Consensus 318 ---------------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~L~~l 378 (530)
.....+.+.++++.|+.+|....++.+++.|+|+|.|++.+.. ...+..+ +.+++|.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 1112223446678889999654489999999999999998652 2333343 57889999999
Q ss_pred HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--------ChHHHHHHHHHHHHHHhhhhhhhhc
Q 009623 379 LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--------DPRIVTVCLEGLENILKVGEAEKNL 450 (530)
Q Consensus 379 l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--------~~~v~~~al~~l~~ll~~~~~~~~~ 450 (530)
|.+++.+++..|+|+|.||+.+.. . +.++..|+++.|+.+|... ..+++..++++|.+|+...+.
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~--~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~---- 436 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDAR--N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE---- 436 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCS--C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HcCCCHHHHHHHHHHHHHHhCChh--H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence 999999999999999999998653 2 2345789999999999876 357888999999999866543
Q ss_pred CCCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHHHHHHHHHhCC
Q 009623 451 GNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEKSVKLLETYWL 495 (530)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~a~~il~~~~~ 495 (530)
....+.+.|++..|..|..+. .+.+.+.|..++..+|.
T Consensus 437 -------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 437 -------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp -------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 366778899999999998775 89999999999998875
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=286.89 Aligned_cols=327 Identities=17% Similarity=0.169 Sum_probs=276.7
Q ss_pred hcCCHHHHHHhhcCC------------ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCH----------HHHHHhhcCC
Q 009623 71 KLENLPVMVAGVWSN------------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV----------PRFVEFLLRE 128 (530)
Q Consensus 71 ~~~~l~~l~~~l~s~------------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v----------~~Lv~ll~~~ 128 (530)
+-+.+|.|+++|+.. ++++++.|+++|.+++++. .+......+.|++ +.+++++.+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 448999999999963 3699999999999999986 5556666677777 6777888765
Q ss_pred C-CHH-----HHH-------HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHH
Q 009623 129 D-YPQ-----LQF-------EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALG 184 (530)
Q Consensus 129 ~-~~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~ 184 (530)
. ..+ ++. +|+|+|.|++. ++++++.+++.|+++.|+.+|.. .++.++..|+|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 2 112 444 99999999977 69999999999999999999941 34678999999999
Q ss_pred hhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhh-cCCChhHH
Q 009623 185 NIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HSNDDEVL 260 (530)
Q Consensus 185 nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v~ 260 (530)
||+.+.+..+..+. ..|++++|+.+| .+.+.+++..++|+|.||+... .........|++|.|+.+| .+.+..++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 99988876676665 456699999999 6889999999999999999852 2333445579999999975 55688999
Q ss_pred HHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHH
Q 009623 261 TDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCL 332 (530)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~l~~L 332 (530)
..++.+|++|+...++....+. ..|+++.|+.+|.+.+. .++..|+++|.|++. +++...+.+++.|+++.|
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L 384 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence 9999999999984544444455 78999999999998754 489999999999997 788888899999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009623 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
+.+|.++ +..++++|+|+|+|++.+++++...+++.|+++.|+.++.+++.++++.|+++|.||+.+.
T Consensus 385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999998 8999999999999999888999999999999999999999999999999999999999864
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.6e-33 Score=292.17 Aligned_cols=403 Identities=17% Similarity=0.143 Sum_probs=337.6
Q ss_pred CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009623 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.++.+++.|.+ ++++++..|+..|+++... ......+.+.|++|.|++++.+++ +.++..|+++|.+++..++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 468999999975 4899999999999998654 457778889999999999999988 999999999999999977778
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009623 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+.+.|+++.|+.++.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++....+......++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888899999999999999999766677788889999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009623 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n 311 (530)
...........++++.|+.++.+.++.++..++|+|.+++....... ...++++.|+.++.+.++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 65444445557899999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcCc-hhH
Q 009623 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI 386 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v 386 (530)
++.+++.....+.+.|+++.|+.++.+.. ++.++..|+++|+|++.+++. ....+.+.|+++.|+.++.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 99988888888999999999999998631 479999999999999886433 3567788999999999999886 699
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH----------------------HHhhh
Q 009623 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN----------------------ILKVG 444 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~----------------------ll~~~ 444 (530)
+..++|+|.|++.+. +....+.+.|+++.|+.++.+.+++++..+.+++.+ +....
T Consensus 373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 999999999999853 444788899999999999987776666655555444 33221
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009623 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
..+..+.+.|+++.|..+..+++++++..|...+..+..
T Consensus 451 ------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 451 ------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred ------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 125667889999999999999999999999998887653
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=288.20 Aligned_cols=403 Identities=17% Similarity=0.163 Sum_probs=341.9
Q ss_pred CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009623 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.++.+++.|.++ +++++..|+.+|+++... ......+.+.|+++.|+++|.+++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 4689999999865 899999999999987654 446778888999999999999988 999999999999999977778
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009623 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+++.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........+..++.+|.+|+.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999899999999999999987888899999999999999999666667888999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009623 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n 311 (530)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.++.+.++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6555555556789999999999999999999999999998754321 1112689999999999999999999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCH--HHHH-HHHHhCcHHHHHHHHhcCc-hhH
Q 009623 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNR--EQIQ-AVIEANIIGPLVALLENAE-FDI 386 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~ll~~~~-~~v 386 (530)
++.+++.....+.+.|+++.|+.++.+.. .+.++..|+++|+|++..++ ...+ .+.+.|+++.|+++|.+++ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 99988888888999999999999998742 37999999999999997533 2333 4778899999999999874 799
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------hHHHHHHHHHHHHHHhhh
Q 009623 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKVG 444 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~----------------------~~v~~~al~~l~~ll~~~ 444 (530)
++.|+|+|.|++.+. +....+.+.|+++.|+.+|...+ ..++..++.+|.++....
T Consensus 370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999853 34478889999999999987533 446667777777777543
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009623 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
. .+..+.+.|+++.|..+..+.+++++..|...+.++..
T Consensus 448 ~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 448 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp H------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2 25667789999999999999999999999988777653
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=5.2e-32 Score=290.78 Aligned_cols=402 Identities=17% Similarity=0.166 Sum_probs=339.2
Q ss_pred CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009623 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.++.|++.|.++ ++.++..|+.+|+++... ......+.+.|+++.|+++|.+++ +.++..|+++|.+++...+..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 4688899999854 899999999999997654 445777888999999999999988 999999999999999977888
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009623 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+...|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888888889999999999999655566777789999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009623 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n 311 (530)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6544444556789999999999999999999999999998765321 1123688999999999999999999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcCc-hhH
Q 009623 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI 386 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v 386 (530)
|+.+.+.....+++.|+++.|+.+|.+..+ ..++..|+++|+||+..+++ ....+...++++.|+.++.+++ +.+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999888888889999999999999986323 48999999999999875433 2346778899999999999886 499
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------hHHHHHHHHHHHHHHhhh
Q 009623 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKVG 444 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~----------------------~~v~~~al~~l~~ll~~~ 444 (530)
+..|+|+|+|++.+ ++....+.+.|+++.|+.+|.+.+ .+++..++.+|.++....
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 99999999999984 455578889999999999986543 346667777887776422
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009623 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
. .+..+.+.|++..|..+..+.+++++..|...+..+.
T Consensus 584 ~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 584 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp H------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred h------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 3566788999999999999999999999988776653
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=5.3e-30 Score=247.24 Aligned_cols=273 Identities=19% Similarity=0.182 Sum_probs=237.6
Q ss_pred CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC----------CCchhHHHHHHHHhhhhccCCCCCChhh
Q 009623 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (530)
Q Consensus 171 ~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 240 (530)
+......+|+|+|+|++.+ +++|+.+.+.|++++|+.+|.. ..++.+++.|+|+|.||+.+........
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445677899999999998 5799999999999999999941 1357899999999999998864223222
Q ss_pred --hhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCC
Q 009623 241 --VSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 241 --~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~ 316 (530)
..|++|.|+.+|.+++++++..++|+|.+|+.. ++.....+.+.|+++.|+.+ +.+.+..++..|+.+|+||+.++
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 457799999999999999999999999999985 55677788899999999997 46678899999999999999866
Q ss_pred chhhHHHh-hcCchHHHHHhhcCCCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009623 317 DMQTQCVI-EYQALPCLLNLLSGNYKK----SIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 317 ~~~~~~~~-~~~~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
+.....+. ..|+++.|+.+|.++ ++ .+++.|+|+|.|++. ++++.++.+.+.|+++.|+.+|.+++..+++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 55555555 789999999999876 43 599999999999997 7889999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009623 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~ 446 (530)
+|+|+|.|++.. ++++...+++.|+++.|+++|.++++.++..++++|.+|+...+.
T Consensus 282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999975 678899999999999999999999999999999999999987554
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.9e-30 Score=249.06 Aligned_cols=269 Identities=19% Similarity=0.178 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHhhhCCCchhhhhHh-h
Q 009623 132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVL-S 199 (530)
Q Consensus 132 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~nl~~~~~~~~~~i~-~ 199 (530)
..+..|+|+|.|++. ++++++.+++.|+++.|+.+|.. .++.++..|+|+|.||+.+.+..+..+. .
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 455689999999999 58999999999999999999942 2467999999999999988876777765 4
Q ss_pred cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChH
Q 009623 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
.|++++|+.+| .+++.+++..++|+|.||+... .........|++|.|+.+| .+.+.++++.++++|.+|+...++
T Consensus 126 ~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 56699999999 7889999999999999999852 2334445679999999975 567899999999999999986655
Q ss_pred HHHHHH-HhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHH
Q 009623 277 KIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (530)
Q Consensus 277 ~~~~~~-~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 348 (530)
....+. ..|+++.|+.+|.+.+. .++..|+++|.|++. ++++.++.+.+.|+++.|+.+|.++ +..++++|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHH
Confidence 445555 78999999999988654 489999999999997 6888888999999999999999998 99999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009623 349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
+|+|+|++.+++++.+.+++.|++|.|++++.+++.++++.|+++|.|++.+...
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999988899999999999999999999999999999999999999997543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=7.3e-27 Score=217.46 Aligned_cols=241 Identities=28% Similarity=0.421 Sum_probs=223.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009623 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
|.++.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+++.|+.+|.++++.++..++++|++++.+.+..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999988 99999999999999998888999999999999999999999999999999999999999888999
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009623 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.+.+.|+++.++.++ .+++..++..++|+|.+++... .........++++.|+.++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6788999999999999999654 33334445789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009623 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88878899999999999999999999999999999999998888888899999999999999998 99999999999999
Q ss_pred HhcCC
Q 009623 355 ITAGN 359 (530)
Q Consensus 355 l~~~~ 359 (530)
++...
T Consensus 239 l~~~~ 243 (252)
T 4hxt_A 239 IKSGG 243 (252)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 98743
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=8.1e-27 Score=218.99 Aligned_cols=234 Identities=16% Similarity=0.160 Sum_probs=200.9
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh
Q 009623 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336 (530)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 336 (530)
+-+..++..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++...+.+++.|+++.|+.+|
T Consensus 55 e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 456778889999887654 5566788999999999 99999999999999999999999998888999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 009623 337 SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK 416 (530)
Q Consensus 337 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~ 416 (530)
.++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.++++.++..|+|+|.+++.+ +++.+..+++.|+++
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHH
Confidence 8643789999999999999999999888999999999999999999999999999999999987 568889999999999
Q ss_pred HHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhCC
Q 009623 417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWL 495 (530)
Q Consensus 417 ~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~~ 495 (530)
.|+.+|.++++.++..++.+|.+|+...+..........+.+..++++ .++.++.++ +.++|++|..|+++||.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999987554322111112345666664 477788776 89999999999999997
Q ss_pred CCC
Q 009623 496 DDE 498 (530)
Q Consensus 496 ~~~ 498 (530)
+.+
T Consensus 288 ~~~ 290 (296)
T 1xqr_A 288 SPA 290 (296)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=1.4e-26 Score=215.44 Aligned_cols=241 Identities=27% Similarity=0.415 Sum_probs=223.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCC
Q 009623 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237 (530)
Q Consensus 159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~ 237 (530)
|.++.|+.+|.+++++++..|+++|++++...+..+..+.+.|+++.|++++ .+.+..++..++|+|.+++... ....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5689999999999999999999999999998888889999999999999999 7778999999999999999874 3334
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009623 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 317 (530)
.....++++.|+.++.+++++++..++++|++++...+.....+.+.|+++.|++++.++++.++..++++|++++.+.+
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 44567899999999999999999999999999998878888889999999999999999999999999999999999888
Q ss_pred hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009623 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
.....+++.|+++.|+.++.++ ++.++..|+|+|++++.+++.....+.+.|+++.|++++.+++++++..|+++|.|+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 8878889999999999999988 999999999999999998899999999999999999999999999999999999999
Q ss_pred hcCC
Q 009623 398 TSGG 401 (530)
Q Consensus 398 ~~~~ 401 (530)
....
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 9754
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=5.5e-27 Score=218.39 Aligned_cols=239 Identities=36% Similarity=0.551 Sum_probs=220.4
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009623 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
...+.++.+|.+++ ++++..|+++|.++...+.+.+..+++.|+++.|+.+|.++++.++..++++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45889999999998 89999999999887776778888899999999999999999999999999999999998888999
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009623 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.+.+.|+++.|+.++ .++++.++..++|+|.+|+...+.. ......+++|.|+.++.++++.++..++|+|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6688999999999999999886544 45556789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009623 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|..++.++ ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999988888888899999999999999998 99999999999999
Q ss_pred Hhc
Q 009623 355 ITA 357 (530)
Q Consensus 355 l~~ 357 (530)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.1e-26 Score=214.45 Aligned_cols=239 Identities=35% Similarity=0.567 Sum_probs=217.7
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009623 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.+++.|++++++++..|++.|+++++.. .+....+++.|+++.|+++|.+++ +.++..|+++|++++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 46899999999999999999999999988873 677888899999999999999988 9999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009623 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+.....+.+.|+++.|++++ .+.+..++..++|+|++|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988775448888999999999999 777899999999999999987
Q ss_pred CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009623 233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 233 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n 311 (530)
.+. .......+++|.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 532 2233457899999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhc
Q 009623 312 IVT 314 (530)
Q Consensus 312 l~~ 314 (530)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.5e-24 Score=218.46 Aligned_cols=322 Identities=10% Similarity=0.112 Sum_probs=255.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE-- 150 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~-- 150 (530)
..+.+.+.+.+++.+.+..|++.|..+... ....+.+. +.|+++.|+++++...+..+.+.++.+|.|++...+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 456677777777777789999999987543 33344444 4677999999999633378999999999999984431
Q ss_pred ------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009623 151 ------------------------------------HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 151 ------------------------------------~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 194 (530)
.+..+.+.|++|.|+.+++++++.+++.++|+|.||+.+ +.+|
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R 491 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI 491 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 345667899999999999999999999999999999977 5689
Q ss_pred hhHhhcCChHHHHHhhcCCCch--hHHHHHHHHhhhhccCCC-CCCh--hhhhchHHHHHHhhcC-CCh-----------
Q 009623 195 DLVLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGKP-QPPF--DQVSPALPALAHLIHS-NDD----------- 257 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~--~~~~~a~~~L~~L~~~~~-~~~~--~~~~~~l~~L~~ll~~-~d~----------- 257 (530)
..+++.|++++|+.++...... ..+..|+++|.+++.... ...+ ....+++|.|+.+|.. ++.
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999544332 378999999999985431 1110 0114899999999983 221
Q ss_pred --hHHHHHHHHHHHhccCC----hHHHHHHHHh-CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC---
Q 009623 258 --EVLTDACWALSYLSDGT----NDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--- 327 (530)
Q Consensus 258 --~v~~~a~~~l~~l~~~~----~~~~~~~~~~-~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~--- 327 (530)
--...++.+|.||+..+ ++....++.. |+++.|..+|.+++..++..|+++++|++.......+.+.+.+
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 12678999999999886 2334557774 8999999999999999999999999999984443222343222
Q ss_pred ---chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHHHHHHHhc--CchhHHHHHHHHHHHhhc
Q 009623 328 ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA-NIIGPLVALLEN--AEFDIKKEAAWAISNATS 399 (530)
Q Consensus 328 ---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~ 399 (530)
-++.|+.++..+ +.++|+.|+|+|+|++.+++...+.+++. ++++.++.++.+ ++.+++..++.++.||+.
T Consensus 652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 378899999988 99999999999999988888888888876 799999999999 799999999999999996
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.7e-22 Score=207.50 Aligned_cols=399 Identities=14% Similarity=0.104 Sum_probs=299.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
..+.+.+.+.+........++..+.+.++. ....+..+..+.++.|.+++++ ..++..|+-+|+.+.........
T Consensus 256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~ 330 (778)
T 3opb_A 256 LSKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCI 330 (778)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTC
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcC
Confidence 355666666554444444566666666677 4555666677788999999864 47889999999998874322111
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009623 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
.+. ...+.+.+.|.+++..-+..|++.|+.++.+.. .|..+. +.+++..|++++....+..+...++.+|.|++..
T Consensus 331 si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 331 NLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp CHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred cHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence 111 245777888877776679999999999987765 555554 5567999999995457888999999999999986
Q ss_pred CCCCCh---------------------------------------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009623 233 KPQPPF---------------------------------------DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 233 ~~~~~~---------------------------------------~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
.+.... ....|++|.|+.++.+.++.++..++|+|.+++..
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 642100 12268899999999999999999999999999866
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCCCch---hHHHHHHHHhHhhcCCchhhHHHhh----cCchHHHHHhhcC-CCch---
Q 009623 274 TNDKIQAVIEAGVFPRLAEFLMHPSPS---VLIPALRTVGNIVTGDDMQTQCVIE----YQALPCLLNLLSG-NYKK--- 342 (530)
Q Consensus 274 ~~~~~~~~~~~~~i~~L~~lL~~~~~~---~~~~a~~~L~nl~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~--- 342 (530)
.+.+..+++.|+++.|+.++.+.... .+..|+.+|++++...+... ++. .|+++.|+.+|.. +...
T Consensus 488 -~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~ 564 (778)
T 3opb_A 488 -KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNP 564 (778)
T ss_dssp -GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred -HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccccc
Confidence 55667788999999999999987644 79999999999985443221 121 3899999999983 2111
Q ss_pred ---------hHHHHHHHHHHHHhcCC----HHHHHHHHHh-CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-H
Q 009623 343 ---------SIKKEACWTVSNITAGN----REQIQAVIEA-NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI-K 407 (530)
Q Consensus 343 ---------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~ 407 (530)
.-+.+|+.+|.|++..+ .+..+.++.. |+++.|..++.+++..+|+.|+++++|++.. ++.+ .
T Consensus 565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~ 642 (778)
T 3opb_A 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAA 642 (778)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGG
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHH
Confidence 12789999999999975 3446777884 9999999999999999999999999999984 3432 2
Q ss_pred HHHHc------CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC--CC
Q 009623 408 FLVIQ------GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH--DN 479 (530)
Q Consensus 408 ~l~~~------~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~ 479 (530)
.+... +.++.|+.+++.+|.+++..|.++|.++....+.. ...+++..+|++.+..+... ++
T Consensus 643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i----------a~~ll~~~~gi~~Ll~lL~~~~~~ 712 (778)
T 3opb_A 643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI----------AKELLTKKELIENAIQVFADQIDD 712 (778)
T ss_dssp GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH----------HHHHTTCHHHHHHHHHHHHHTTTC
T ss_pred HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH----------HHHHHHccccHHHHHHHHhccCCC
Confidence 33221 23789999999999999999999999996544432 24555556899999988766 99
Q ss_pred HHHHHHHHHHHHHhCC
Q 009623 480 AEIYEKSVKLLETYWL 495 (530)
Q Consensus 480 ~~v~~~a~~il~~~~~ 495 (530)
++++.++..++...++
T Consensus 713 ~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 713 IELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999886
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=8.5e-23 Score=184.35 Aligned_cols=199 Identities=38% Similarity=0.567 Sum_probs=185.9
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009623 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 320 (530)
..+..+.|..++.+++++++..++|+|.+++..+++....+++.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35678899999999999999999999999998888888889999999999999999999999999999999999888888
Q ss_pred HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009623 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
..+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++.....+++.|+++.|++++.+++++++..|+++|.|++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999 999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009623 401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 401 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll 441 (530)
+++....+.+.|+++.|+.++.++++.++..++++|.++.
T Consensus 169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4677888899999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=2.1e-22 Score=181.75 Aligned_cols=199 Identities=34% Similarity=0.533 Sum_probs=181.4
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009623 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (530)
Q Consensus 114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 193 (530)
..|..+.|+.+|.+++ +.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3678999999999988 999999999999999888999999999999999999999999999999999999999888888
Q ss_pred hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009623 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (530)
Q Consensus 194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (530)
+..+.+.|+++.|+.++ .+.+..++..++|+|++++...+.. ......+++|.|+.++.++++.++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 7789999999999999999865322 234457899999999999999999999999999999
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009623 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 273 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~ 314 (530)
..+.....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888889999999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=8.3e-22 Score=184.91 Aligned_cols=226 Identities=14% Similarity=0.101 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009623 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l 209 (530)
.+-+..|+..|.+++. +.++...+.+.|+++.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999998 6678888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009623 210 LNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (530)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 288 (530)
+..+++..+++.|+|+|++++++.+.. ......+++|.|+.+|.+++..++..++|+|++++...++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 965568899999999999999876432 2334468999999999999999999999999999988888889999999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh--cCc---hHHHHHhhcCCC-chhHHHHHHHHHHHHhc
Q 009623 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQA---LPCLLNLLSGNY-KKSIKKEACWTVSNITA 357 (530)
Q Consensus 289 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~--~~~---l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~ 357 (530)
.|+.+|.+++..++..|+++|++|+.+.+......-. ..+ +..-.+-++... ..++.+.|..++.++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999875433222211 112 212223333221 24556666666666654
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=169.14 Aligned_cols=197 Identities=19% Similarity=0.141 Sum_probs=170.8
Q ss_pred CHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009623 117 VVPRFVEFLLREDYP--QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 194 (530)
.+|.++++|.+++ + .++..|+++|.+++..+++.+..+++.|+||.|+++|+++++++++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 899999999999998889999999999999999999999999999999999999999888899
Q ss_pred hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc----------------CCChh
Q 009623 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------------SNDDE 258 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~----------------~~d~~ 258 (530)
..+.+.|++++|+++|..+.+.++++.++.+|++|+....... ....+.+|.|+.++. ..+.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999999546789999999999999998754333 334567888887653 13678
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCCC------CchhHHHHHHHHhHhhcC
Q 009623 259 VLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMHP------SPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~------~~~~~~~a~~~L~nl~~~ 315 (530)
++.++.++|.|++..+++..+.+.+. |+++.|+.+++.. +...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998877777778765 7789999998752 567899999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=165.53 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=166.5
Q ss_pred CCHHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009623 73 ENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
..++.++++|.++++ +++..|+..+++++... .+....+++.|++|.|+++|.+++ +++|..|+|+|.||+.++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 378999999999998 89999999999987653 556778889999999999999988 99999999999999998899
Q ss_pred hHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---------------CCC
Q 009623 151 HTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------------GQP 214 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---------------~~~ 214 (530)
++..+++.|+||.|+++|. +.+.+++++++.+|+||+.... .+..+.+ +++++|+.++. ...
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence 9999999999999999997 5789999999999999997654 6667666 46999988762 113
Q ss_pred chhHHHHHHHHhhhhccCC-CCCChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccC
Q 009623 215 KLSMLRNATWTLSNFCRGK-PQPPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 215 ~~~~~~~a~~~L~~L~~~~-~~~~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~ 273 (530)
+..++.++.++|.||+... ..+.... ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6799999999999999865 3333333 35788999999874 2667899999999999864
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.79 E-value=2.3e-17 Score=172.80 Aligned_cols=343 Identities=11% Similarity=0.126 Sum_probs=247.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhh
Q 009623 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRD 195 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~ 195 (530)
++|.+..++.+++ ..+|..|+.+|+.++..... ......+++.++.++.++++.++..++++|+.++...+. .+.
T Consensus 243 ~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 243 VMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp THHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 5666666666555 66777777777776652111 112235678888889888899999999999998854331 111
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009623 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
......+++.+..++ .+.+..++..++++|..++..-.. ......++|.+..++.+.+++++..++.+++.+.....
T Consensus 319 ~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 319 NVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp HHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred hHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC
Confidence 112234667777777 788899999999999999864211 12235678899999998899999999998888764322
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009623 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 276 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
.. .....+++.+..++.+.+|.++..++.+++.++...... .....+++.+..++.+. +..+|..|+.+++.+
T Consensus 396 ~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l 468 (588)
T 1b3u_A 396 IR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKL 468 (588)
T ss_dssp HH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHH
Confidence 11 122357788889999999999999999999987532211 12234688899999888 899999999999999
Q ss_pred hcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHH
Q 009623 356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435 (530)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~ 435 (530)
+...... .....++|.|..++.++++.+|..++++++.++.....+ .....+++.|..+++++++.++..+++
T Consensus 469 ~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~ 541 (588)
T 1b3u_A 469 VEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAK 541 (588)
T ss_dssp HHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHH
Confidence 8632111 123468888988888889999999999999998742221 133468899999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009623 436 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 436 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
++..+....... +. ....+..|..+..+.+++|+..|...+..+-
T Consensus 542 ~l~~l~~~~~~~----------~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 542 SLQKIGPILDNS----------TL----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHGGGSCHH----------HH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhchh----------hh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 999998653211 11 1234567777889999999999999988653
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=5.4e-18 Score=185.31 Aligned_cols=355 Identities=13% Similarity=0.131 Sum_probs=260.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009623 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
-+.+++.+.++++.++..++.++..++.......+ .++++.|++.+.+++ +.++..++.+|+.++...+.....
T Consensus 92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 92 KSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence 35666778888899999999999999876422222 457999999999887 899999999999999744332211
Q ss_pred HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009623 155 VI----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 155 ~~----~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
-. -..+++.+++++.++++.+|..|+++|++++...+..-.. .-.++++.++..+ .+++..++..++++|..++
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA-GDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 00 0235677888888899999999999999988654421111 0123667777777 7788999999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhh-----------CC
Q 009623 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE---AGVFPRLAEFL-----------MH 296 (530)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~i~~L~~lL-----------~~ 296 (530)
...+..-......+++.+..++.+.++.++..+++.+..++..... ...+. ..+++.++..+ .+
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 8654322233467888888999989999999999999998865421 11121 13456666665 23
Q ss_pred -----------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009623 297 -----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 297 -----------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
.++.++..|..+++.++...+.. ++ ..+++.+...+.++ ++.+|..|++++++++.+..+....
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~ 396 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP 396 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34678999999999998644322 11 24678888888888 9999999999999999987765543
Q ss_pred HHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009623 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 366 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~ 445 (530)
.+ .++++.++..+.++++.||..|+|++++++....... ..-.-.++++.|+..+.++++.++..++++|.+++....
T Consensus 397 ~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 397 YL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP-PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC-TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 33 4688999999999999999999999999986321100 000122467888888888899999999999999987654
Q ss_pred h
Q 009623 446 A 446 (530)
Q Consensus 446 ~ 446 (530)
.
T Consensus 475 ~ 475 (852)
T 4fdd_A 475 T 475 (852)
T ss_dssp G
T ss_pred H
Confidence 3
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.76 E-value=8e-17 Score=168.68 Aligned_cols=381 Identities=12% Similarity=0.093 Sum_probs=284.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.++.+...+.++++.++..|+..+..++... +. ......++|.+..++++++ +.++..|+.+|+.++...+..
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence 3455566677888999999999999887653 21 1223567899999998887 899999999999988743321
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009623 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
.....++|.+..++.++++.+|..++.+|+.++..... ......+++.++.++ .++++.++..+++++..++...
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence 12234688888999889999999999999999753211 112334678888888 7788999999999999999865
Q ss_pred CCCCh--hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009623 234 PQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 234 ~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n 311 (530)
+.... .....++|.+..++.+.++.++..++++++.++..-... .....+++.+..++.+.++.++..++.+++.
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33211 345778899999999999999999999999887432211 1223578889999999999999999999998
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009623 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (530)
++...... .....++|.+..++.+. +..+|..++.+++.++.. ..+ .....+++.+..++.+++..||..|
T Consensus 390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 87643221 12245788888988887 899999999999998752 111 1122467888888998899999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009623 391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK 470 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (530)
+.++..++....++. ....+++.|..++.+++..++..+++++..+....... .+. ...+..
T Consensus 462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~---------~~~-----~~~~~~ 523 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD---------ITT-----KHMLPT 523 (588)
T ss_dssp HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH---------HHH-----HHTHHH
T ss_pred HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH---------HHH-----HHHHHH
Confidence 999999987433332 23457888888888899999999999999988654321 012 234577
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCC
Q 009623 471 IESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 471 l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
|..+..+++++|+..+...+..++.
T Consensus 524 l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 524 VLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHhhCCCCCchHHHHHHHHHHHHHH
Confidence 7777888999999999988888764
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.75 E-value=5.3e-17 Score=177.47 Aligned_cols=392 Identities=14% Similarity=0.111 Sum_probs=277.4
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009623 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156 (530)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 156 (530)
.++..+.+.++.+|..|+..|++.+... -..+..-....+-+.+++.|.+++ +.+|..++.+++.++...... .
T Consensus 52 ~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~ 125 (852)
T 4fdd_A 52 FVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----N 125 (852)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----T
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----c
Confidence 3444445678899999999999988642 111111122345566777788777 899999999999998743110 0
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh----hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009623 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL----SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~----~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
-.+.++.|+..+.++++.+++.++.+|+.++.+.+.....-. -..+++.+++.+ .+++..++..+++++..+...
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhc
Confidence 135789999999999999999999999999865443211000 122566677777 678899999999999988865
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009623 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl 312 (530)
.+.........+++.+..++.+++++++..++++|..++...++.....+. ++++.+...+.+.++.++..|+.++..+
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 432222234578888999998999999999999999998766654433333 5788888889999999999999999998
Q ss_pred hcCCchhhHHHhh---cCchHHHHHhhc-----------C--C--------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009623 313 VTGDDMQTQCVIE---YQALPCLLNLLS-----------G--N--------YKKSIKKEACWTVSNITAGNREQIQAVIE 368 (530)
Q Consensus 313 ~~~~~~~~~~~~~---~~~l~~L~~lL~-----------~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (530)
+.... .. ..+. ..+++.++..+. + + .+..+|+.|+.+|..++...++. ++
T Consensus 284 ~~~~~-~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~- 357 (852)
T 4fdd_A 284 AEQPI-CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL- 357 (852)
T ss_dssp TTSTT-HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-
T ss_pred hcchh-HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-
Confidence 86432 11 1221 245667776662 2 0 13457999999999998633221 11
Q ss_pred hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhh
Q 009623 369 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK 448 (530)
Q Consensus 369 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~ 448 (530)
..+++.+...+.++++.+|..|+++|++++.+.. +.... .-.++++.+..+++++++.++..+++++.++........
T Consensus 358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 435 (852)
T 4fdd_A 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 435 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence 2367888888888899999999999999998754 33222 224578899999999999999999999999987643311
Q ss_pred hcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009623 449 NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
...+. .+.+..|.....++++.++..|...+..+..
T Consensus 436 ------~~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 436 ------PDTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp ------TTTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ------HHHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 11122 2345666666777899999999998887653
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.74 E-value=2.9e-16 Score=163.72 Aligned_cols=333 Identities=16% Similarity=0.159 Sum_probs=226.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.++.+.+.+.++++.++..|+..+.++.. ..... .+++.+.+++.+++ +.+|..|++++.++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 45556666777788888777777776531 12222 24677899999887 99999999999999986665432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009623 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+.++++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..|++.+ .+.++..+..++.++..++...
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 246789999999999999999999999999987764311111223466677777 4556777777888887776432
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009623 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 310 (530)
......+++.+..++++.++.|+..+++++.++... +++..+.+. ..+.+.|+.++ ++++.++..|+.+++
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHH
Confidence 234467888899999999999999999999998742 233334333 25567777665 478899999999999
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009623 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (530)
.++...+..... .+..+. .+.++ +..+|..|++++.+++... ++. .+++.|...+.+.+.+++..+
T Consensus 308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~ 373 (591)
T 2vgl_B 308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKA 373 (591)
T ss_dssp HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHH
Confidence 998755433211 111111 11233 4677888888888776532 121 245566677777777888888
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009623 391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~ 445 (530)
+++|++++... +.... .+++.|++++......++..++.++..++...+
T Consensus 374 v~aI~~la~~~-~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 374 VRAIGRCAIKV-EQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHHHHHHHTTC-HHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhC-hhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 88888877753 22222 246777777777777777666667777665443
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=1.7e-14 Score=144.56 Aligned_cols=415 Identities=13% Similarity=0.139 Sum_probs=292.8
Q ss_pred CCHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCC----------------cHHHHH-HcCCHHHHHHhhcCCCCHHH
Q 009623 73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSP----------------PIEEVI-RSGVVPRFVEFLLREDYPQL 133 (530)
Q Consensus 73 ~~l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~----------------~~~~~~-~~g~v~~Lv~ll~~~~~~~i 133 (530)
.+++.++..|+. +|.++...++..|.++.+....+ ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 378999999986 57888888999998888764321 112333 4577999999999888 899
Q ss_pred HHHHHHHHHHHhcCChh-hHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009623 134 QFEAAWALTNIASGTSE-HTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (530)
Q Consensus 134 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~ 211 (530)
+..++.+|..++...++ ..+.+.. .++++.|+.+|+++.+.+|..++.+|.+|+.+++..++.+.-.|+++.|++++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999997776 5666664 499999999999999999999999999999999999999988899999999995
Q ss_pred CCC---chhHHHHHHHHhhhhccCCC-CCChhhhhchHHHHHHhhcCCChh------HHHH---HHHHHHHhccCC----
Q 009623 212 GQP---KLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDDE------VLTD---ACWALSYLSDGT---- 274 (530)
Q Consensus 212 ~~~---~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~------v~~~---a~~~l~~l~~~~---- 274 (530)
... ...+...++.++.+|.+..+ +.......+++|.|.+++..+++. ...+ ++.++.-+...+
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 322 34678899999999999874 334445578899999998754321 3333 444555554431
Q ss_pred --hHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcC---------chHHHHHhhcCCCc
Q 009623 275 --NDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---------ALPCLLNLLSGNYK 341 (530)
Q Consensus 275 --~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~---------~l~~L~~lL~~~~~ 341 (530)
..+...+.+.|+++.|++++... ...++..|+.+++.+..+++.....+.... ++..|+.++.+.+.
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 23456778899999999998875 567899999999999999987766665422 44445555665546
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHh----------Cc---HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009623 342 KSIKKEACWTVSNITAGNREQIQAVIEA----------NI---IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~---i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 408 (530)
..+|.+|+.++..+..++++....++.. +. -..++.-+-+.|+.--.-|+.++.++... +++..+.
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~ 457 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQ 457 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHH
Confidence 8899999999999999887654444422 10 12344555556765556688888888885 4444444
Q ss_pred HHH--------c---CChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009623 409 LVI--------Q---GCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 476 (530)
Q Consensus 409 l~~--------~---~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 476 (530)
+.. . -.++.+..+|. ..++.+....+..|...+-.++. .+...+.+...++.|.....
T Consensus 458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~----------AV~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI----------AVTHFLHNSANVPFLTGQIA 527 (651)
T ss_dssp HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH----------HHHHHHHSTTHHHHHHHHHH
T ss_pred HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH----------HHHHHHcCCchHHHHHHHHH
Confidence 333 0 11445555554 34565555555555555544433 35667777767888776543
Q ss_pred C--C--CHHHHHHHHHHHHHhCCCCCC
Q 009623 477 H--D--NAEIYEKSVKLLETYWLDDED 499 (530)
Q Consensus 477 ~--~--~~~v~~~a~~il~~~~~~~~~ 499 (530)
+ . +.-|+=.+.-++--+|....+
T Consensus 528 ~~~~~~~~lvqGL~a~LLGi~yef~~~ 554 (651)
T 3grl_A 528 ENLGEEEQLVQGLCALLLGISIYFNDN 554 (651)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred hccCcchHHHHHHHHHHHHHHhhccCC
Confidence 2 2 233677777777665554443
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.70 E-value=1.3e-15 Score=143.53 Aligned_cols=258 Identities=14% Similarity=0.133 Sum_probs=202.7
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009623 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 192 (530)
...+.++.|+..|.+++ +.++..|+++|+++.. + +.++.|+.++.++++.++..++++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 34568999999999887 9999999999999873 2 3478899999999999999999999998643321
Q ss_pred hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009623 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (530)
Q Consensus 193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (530)
.. ..++.+.+.+..+++..++..++++|..+....+ .....+++.|..++.++++.++..++++|+.+..
T Consensus 88 ~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 11 1233333333367889999999999999975431 1235678999999999999999999999998753
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009623 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 273 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
.+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 2578999999999999999999999999853222 3578899999988 999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHH
Q 009623 353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVT 431 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~ 431 (530)
+++.. ...++.|+..+.+++ ++..|+++|..+... .+++.|..++.. ++++++.
T Consensus 217 ~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~------------~~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 217 SYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGDK------------TLLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp HHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG------------GGHHHHHHHHTTSSCCHHHH
T ss_pred HHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch------------hhhHHHHHHHhcCCCcHHHH
Confidence 99852 257889999998654 999999999998541 467888888864 5677777
Q ss_pred HHHHHHH
Q 009623 432 VCLEGLE 438 (530)
Q Consensus 432 ~al~~l~ 438 (530)
.++..+.
T Consensus 272 ~~~~~l~ 278 (280)
T 1oyz_A 272 SAIDKLK 278 (280)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7777664
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.70 E-value=2.1e-14 Score=143.85 Aligned_cols=410 Identities=16% Similarity=0.144 Sum_probs=288.6
Q ss_pred CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCChh
Q 009623 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~-~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
+.++.|..-+.+ .-.+.+..|+..|+.+...- + . .+-+++++.|+..|+.+ ++.++...++.+|.++.....+
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y--~--~-~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY--R--L-EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT--T--T-HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh--H--H-HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 578999998885 45789999999999885432 1 2 23345699999999865 3588888999999988774432
Q ss_pred -----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhhhHhh-cCChHHHHHhh
Q 009623 151 -----------------HTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLS-QGGLVPLLAQL 210 (530)
Q Consensus 151 -----------------~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~-~~~i~~Ll~ll 210 (530)
..+.++ +.+.++.|+.+|++.+..++..++.+|..|+...+. .++.+.. .++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 223343 467899999999999999999999999999988776 6777774 48999999999
Q ss_pred cCCCchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009623 211 NGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (530)
Q Consensus 211 ~~~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (530)
.+..+.++..++..|.+|+.+.+... .....++++.|+.++.... ..+..+++.++.+|...+..+...+.+.+
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 77788999999999999999875444 3445799999999998654 47899999999999999988888899999
Q ss_pred cHHHHHHhhCCCCch------hHHH---HHHHHhHhhcCCc------hhhHHHhhcCchHHHHHhhcCCC-chhHHHHHH
Q 009623 286 VFPRLAEFLMHPSPS------VLIP---ALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNY-KKSIKKEAC 349 (530)
Q Consensus 286 ~i~~L~~lL~~~~~~------~~~~---a~~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~ 349 (530)
.++.|..++..++.. .... ++.++.-++.... .....+.+.|+++.|+.++..+. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754321 2222 5566666665422 33456778999999999988653 567999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---------cHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc----C--
Q 009623 350 WTVSNITAGNREQIQAVIEAN---------IIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQ----G-- 413 (530)
Q Consensus 350 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~-- 413 (530)
.+++.+..+++..-..+.+.. ++..|+.++.+. ...+|..|+.++..+..+. .+....+... .
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~~ 413 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTID 413 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCcccc
Confidence 999999999988777776532 344444445444 5889999999999999874 3332333322 0
Q ss_pred ----Ch---HHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcC------CCCchhhHHHhhhhccHHHHHH-HhcCCC
Q 009623 414 ----CI---KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG------NTDVNVFTQMIDDAEGLEKIES-LQTHDN 479 (530)
Q Consensus 414 ----~l---~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~-l~~~~~ 479 (530)
.+ ..|..-+-+.|+--.-.+.-++..++...+..+... .+..++... .++.+.. |....+
T Consensus 414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vt------liq~~~~~L~~~~~ 487 (651)
T 3grl_A 414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVS------LLQQCTNILSQGSK 487 (651)
T ss_dssp CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCB------HHHHHHHHTTTTCC
T ss_pred cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCccc------HHHHHHHHHhcCCc
Confidence 01 123344445566443446667777776665433210 000010111 1333333 344566
Q ss_pred HHHHHHHHHHHHHhCC
Q 009623 480 AEIYEKSVKLLETYWL 495 (530)
Q Consensus 480 ~~v~~~a~~il~~~~~ 495 (530)
+.+.--...++-.|.-
T Consensus 488 ~ri~vgyL~LL~~WL~ 503 (651)
T 3grl_A 488 IQTRVGLLMLLCTWLS 503 (651)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777666777665543
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.69 E-value=4.8e-15 Score=154.55 Aligned_cols=332 Identities=15% Similarity=0.123 Sum_probs=246.9
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009623 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.+++.+.+++..++..+...+..++... +... .-+++.+.+-+.+++ +.++..|+.+|+++.. ++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~e~~----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--PDMA----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--HHHH----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--chHH----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence 36788999999999999988888888776531 2111 124677888888887 9999999999999863 5544
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009623 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+ ++.+.+++.++++.+|..|++++.+++...++ .+...++++.+..++ .+.++.++..|+++|..++..
T Consensus 120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence 443 57899999999999999999999999876554 223346788899998 788999999999999999987
Q ss_pred CCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009623 233 KPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 233 ~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n 311 (530)
.+.. ........++.|+..+...++..+..++.+++.++...+... ..+++.+..++++.++.++..|++++..
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6533 233345667778887878899999999999988875544332 2567888889999999999999999999
Q ss_pred hhcC---CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009623 312 IVTG---DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 312 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
+... +++..+.+ -..+.+.|+.++. + ++.+|..|+.+|+.++...++.... .+..+. .+.+++..+|.
T Consensus 266 l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~ 336 (591)
T 2vgl_B 266 FLELLPKDSDYYNML-LKKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKL 336 (591)
T ss_dssp SCCSCCBTTBSHHHH-HHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHH
T ss_pred HhhccCCCHHHHHHH-HHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHH
Confidence 8753 23333322 2355677776664 6 8999999999999998754432211 111121 12234589999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
.|++.|.+++...+.+ .+++.|..++.+.|.+++..+++++..+....
T Consensus 337 ~al~~L~~l~~~~nv~--------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 337 EKLDIMIRLASQANIA--------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHHHHHHHTCCSSTHH--------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCChhhHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 9999999998764422 24667778888889999999999888887544
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.67 E-value=8.2e-15 Score=138.07 Aligned_cols=254 Identities=14% Similarity=0.086 Sum_probs=200.1
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009623 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.++..|.++++.++..|++.|.++.. .+.++.|+.++.+++ +.++..|+++|+.+..... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence 478999999999999999999999998742 235888999999888 9999999999999875222 11
Q ss_pred HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009623 153 KVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.. +++.|. .++.++++.++..++++|+++....+... ..+++.|+..+ .++++.++..++++|.++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 11 234444 24567889999999999999974433221 23577888888 78899999999999998764
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009623 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n 311 (530)
...+|.|..++.++++.++..++++|+.+....+ .+++.|..++.++++.++..|+++|+.
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2478999999999999999999999999854333 346778889999999999999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHH
Q 009623 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEA 390 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a 390 (530)
+.. ...++.|...+.++ + +|..|+++|+.+.. ..+++.|..++.+. ++++...+
T Consensus 219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 862 35688899999865 3 89999999999853 14788999998654 67888888
Q ss_pred HHHHH
Q 009623 391 AWAIS 395 (530)
Q Consensus 391 ~~aL~ 395 (530)
..+|.
T Consensus 274 ~~~l~ 278 (280)
T 1oyz_A 274 IDKLK 278 (280)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77764
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.67 E-value=1.8e-14 Score=150.63 Aligned_cols=336 Identities=17% Similarity=0.130 Sum_probs=205.2
Q ss_pred hcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcc------ccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChH
Q 009623 15 KYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG------LQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSG 88 (530)
Q Consensus 15 ~~k~~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~ 88 (530)
..++..+.+|.+++-.....+||+.-++....+|+... .-.+.. . -.....+++.+.+++..
T Consensus 18 ~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d---------~---~~~~~~vik~~~s~~~~ 85 (618)
T 1w63_A 18 TIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYP---------A---HFGQLECLKLIASQKFT 85 (618)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCC---------C---GGGHHHHHHHHHSSSHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCC---------C---cchHHHHHHHHcCCchH
Confidence 33444555666666666677888776543222222100 011110 0 13667888999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 009623 89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168 (530)
Q Consensus 89 ~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL 168 (530)
.+..+.-.+..++.. .+..-.+ ++..|.+-|.+++ +.++..|+++|+++.. ++... .+++.+.++|
T Consensus 86 ~Krl~Yl~~~~~~~~--~~e~~~l----~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L 151 (618)
T 1w63_A 86 DKRIGYLGAMLLLDE--RQDVHLL----MTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLL 151 (618)
T ss_dssp HHHHHHHHHHHHCCC--CHHHHHH----HHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CcHHHHH----HHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHH
Confidence 888888888888654 2222111 4677888888888 8999999999999985 44333 3468899999
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHH
Q 009623 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL 248 (530)
Q Consensus 169 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L 248 (530)
.++++.+|..|+.+++++....|+.. .++++.+..++ .+.++.++..|+++|..++...+.. ......++|.+
T Consensus 152 ~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l 224 (618)
T 1w63_A 152 KTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQL 224 (618)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHH
Confidence 99999999999999999987666432 24677778888 7889999999999999998764321 22345667777
Q ss_pred HHhhcC---------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC------CCCchhHHHHHH
Q 009623 249 AHLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALR 307 (530)
Q Consensus 249 ~~ll~~---------------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~~~~~a~~ 307 (530)
+.+|.. .++..+..++.+++.++..++.... .+++.|..++. +.+..+...|++
T Consensus 225 ~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~ 299 (618)
T 1w63_A 225 VRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVL 299 (618)
T ss_dssp HHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 766542 4788888888888888766543211 22333333321 122345555555
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009623 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
++..+.. .+. +. ..+++.|..++.++ ++.+|..|..+|+.++...+..+. ...+.++.++.+++..+|
T Consensus 300 ~i~~l~~-~~~----l~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir 367 (618)
T 1w63_A 300 TIMDIKS-ESG----LR-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDLDVSIK 367 (618)
T ss_dssp HHHHSCC-CHH----HH-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSSCHHHH
T ss_pred HHHhcCC-CHH----HH-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCCChhHH
Confidence 5555432 111 11 12344555555554 555555555555555544333211 233444555555555555
Q ss_pred HHHHHHHHHhhcC
Q 009623 388 KEAAWAISNATSG 400 (530)
Q Consensus 388 ~~a~~aL~nl~~~ 400 (530)
..|+.+|..++..
T Consensus 368 ~~alelL~~l~~~ 380 (618)
T 1w63_A 368 RRAMELSFALVNG 380 (618)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HHHHHHHHHHccc
Confidence 5555555555543
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.63 E-value=2.6e-14 Score=156.58 Aligned_cols=355 Identities=14% Similarity=0.186 Sum_probs=245.0
Q ss_pred CHHHHHHhhcC-------CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009623 74 NLPVMVAGVWS-------NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 74 ~l~~l~~~l~s-------~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
.++.++..+.. +++.++..|..+|..++...+..... .+++.+.+.+.+.+ ...+..|+++++.++.
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~-----~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE-----PVLEFVEQNITADN-WRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH-----HHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence 45666666664 23578888989988887543212122 35677777888777 8999999999999998
Q ss_pred CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh---hhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009623 147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (530)
Q Consensus 147 ~~~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a 222 (530)
+.. +.....+. .+++.|+..+.++++.++..++|+|+.++...... ... -..+++.++..+ .+. +.++..+
T Consensus 399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a 473 (861)
T 2bpt_A 399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNC 473 (861)
T ss_dssp SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHH
Confidence 643 33333332 47888999999999999999999999998542210 011 123577778887 444 8899999
Q ss_pred HHHhhhhccCCC----CCChhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009623 223 TWTLSNFCRGKP----QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (530)
Q Consensus 223 ~~~L~~L~~~~~----~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 296 (530)
+|++.+++.... ..-......+++.|..++.+.+ +.++..++.+++.++..........+. .+++.++..+..
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~ 552 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ 552 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence 999999987532 1122345677888888888544 788999999999988654433332332 355556665542
Q ss_pred C---------------CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHHHHHHHHHHhcCCH
Q 009623 297 P---------------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNITAGNR 360 (530)
Q Consensus 297 ~---------------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~ 360 (530)
. ...++..++.++++++...+...... -..+++.+...+.+. +. .++..++++++.++....
T Consensus 553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~ 630 (861)
T 2bpt_A 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG 630 (861)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence 1 34567789999999987554432211 235778888888877 66 899999999999986433
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC--hHHHHHHHHHHH
Q 009623 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD--PRIVTVCLEGLE 438 (530)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~al~~l~ 438 (530)
......+. .++|.|+..+.+.++.++..++.++..++.........++ ..+++.+...+.+.+ +.++..++.++.
T Consensus 631 ~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 631 KGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp GGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred hhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 32322232 3888999999888889999999999998875433222222 345777777777654 789999999999
Q ss_pred HHHhhhh
Q 009623 439 NILKVGE 445 (530)
Q Consensus 439 ~ll~~~~ 445 (530)
.++....
T Consensus 708 ~l~~~~~ 714 (861)
T 2bpt_A 708 DIASNIG 714 (861)
T ss_dssp HHHHHHG
T ss_pred HHHHHhh
Confidence 9987643
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.62 E-value=7.3e-14 Score=153.03 Aligned_cols=399 Identities=10% Similarity=0.109 Sum_probs=264.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH--H
Q 009623 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT--K 153 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~--~ 153 (530)
+.+.+.+.+.++..+..|+.++..++...........+ ..+++.++..+.+++ +.++..++|+|+.++....... .
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 34444566888999999999999998543112222222 347889999998887 9999999999999986321100 0
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-----chhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhh
Q 009623 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-----PRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLS 227 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-----~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~ 227 (530)
.. -..+++.++..+.++ +.++..++|+|.+++... ......+ ..+++.++..+.. +.+..++..++.++.
T Consensus 450 ~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 450 QH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 00 013468888888765 899999999999997532 1122222 2356777777742 334789999999999
Q ss_pred hhccCCCCCChhhhhchHHHHHHhhcCC---------------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009623 228 NFCRGKPQPPFDQVSPALPALAHLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (530)
Q Consensus 228 ~L~~~~~~~~~~~~~~~l~~L~~ll~~~---------------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 292 (530)
.++...+.........++|.++..+... ...++..++.++..++............ .+++.++.
T Consensus 526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~ 604 (861)
T 2bpt_A 526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR 604 (861)
T ss_dssp HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Confidence 9988765433344566777777766521 3456778888998887544332221222 56777888
Q ss_pred hhCCCCc-hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Q 009623 293 FLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371 (530)
Q Consensus 293 lL~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 371 (530)
.+.+.+. .++..++.+++.++..........+ ..+++.+...+.+. ++.++..++++++.++..........+ ..+
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l 681 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAM 681 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHH
Confidence 8888777 8999999999999865443332222 34788999999776 888999999999999874333333333 357
Q ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC-----------hHHHHHHHHHHH
Q 009623 372 IGPLVALLENAE--FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD-----------PRIVTVCLEGLE 438 (530)
Q Consensus 372 i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-----------~~v~~~al~~l~ 438 (530)
++.++..+.+++ +.+|..++.+++.++.........++ ..+++.+...+.... ..++..+++++.
T Consensus 682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~ 759 (861)
T 2bpt_A 682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL--NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV 759 (861)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 888888888764 88999999999999875433333333 235777777776431 347788888888
Q ss_pred HHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC----CHHHHHHHHHHHHHhCC
Q 009623 439 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD----NAEIYEKSVKLLETYWL 495 (530)
Q Consensus 439 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~v~~~a~~il~~~~~ 495 (530)
.++....... ..+...+. ..++.|.....+. +.+++..|...+..+..
T Consensus 760 ~i~~~l~~~~-------~~~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 760 GIVAGLHDKP-------EALFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHTTTCH-------HHHGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCH-------HHHHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 8875432100 01122111 1244555544432 88999999998887643
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.60 E-value=9.7e-14 Score=152.35 Aligned_cols=400 Identities=16% Similarity=0.153 Sum_probs=247.9
Q ss_pred CHHHHHHhhc-------CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009623 74 NLPVMVAGVW-------SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 74 ~l~~l~~~l~-------s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
.++.+++.+. ++++..+..|+.++..++...+... + ..+++.+...+.+++ +.++..|+++|+.++.
T Consensus 322 ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~----~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI----V-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG----H-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh----H-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHc
Confidence 3566666665 2356788888888888775432111 1 235777778888777 8999999999999998
Q ss_pred CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh---hhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009623 147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (530)
Q Consensus 147 ~~~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a 222 (530)
+.. +...... ..+++.++..+.++++.++..|+|+|++++...+.. ... -..+++.++..+ .+. +.++..+
T Consensus 396 ~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~~l-~~~-~~v~~~a 470 (876)
T 1qgr_A 396 GPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIEGL-SAE-PRVASNV 470 (876)
T ss_dssp SSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHHHHHHHHT-TSC-HHHHHHH
T ss_pred CCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHHHHHHHHH-cCC-HHHHHHH
Confidence 654 3333322 357899999999999999999999999998654321 111 123567777777 443 7889999
Q ss_pred HHHhhhhccCCC--------------CCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHh---------------
Q 009623 223 TWTLSNFCRGKP--------------QPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYL--------------- 270 (530)
Q Consensus 223 ~~~L~~L~~~~~--------------~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l--------------- 270 (530)
+|++.+++.... ..-......++|.|..++... +..++..++.+++.+
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l 550 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKT 550 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 999999986421 111223456777777776543 223444444443333
Q ss_pred -----------------------------------------ccCCh-HHHHHHHHhCcHHHHHHhhCCCC--chhHHHHH
Q 009623 271 -----------------------------------------SDGTN-DKIQAVIEAGVFPRLAEFLMHPS--PSVLIPAL 306 (530)
Q Consensus 271 -----------------------------------------~~~~~-~~~~~~~~~~~i~~L~~lL~~~~--~~~~~~a~ 306 (530)
+.... ....... ..+++.++.++.+.. +.++..++
T Consensus 551 ~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-HHHHHHHHHHC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-HHHHHHHHHHHHhccCCCCccHHHH
Confidence 32221 1111111 135667777777664 47899999
Q ss_pred HHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc--Cch
Q 009623 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEF 384 (530)
Q Consensus 307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~ 384 (530)
.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++......+...+ ..+++.++..+.+ .+.
T Consensus 630 ~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~ 707 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHR 707 (876)
T ss_dssp HHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCG
T ss_pred HHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccccH
Confidence 9999998643322222222 36788888887643678999999999999863223333333 3578888888887 357
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC-----------hHHHHHHHHHHHHHHhhhhhhh-hcC-
Q 009623 385 DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD-----------PRIVTVCLEGLENILKVGEAEK-NLG- 451 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-----------~~v~~~al~~l~~ll~~~~~~~-~~~- 451 (530)
+++..+++++++++.....+...++ ..+++.|...+.... ..++..++.++..++....... ...
T Consensus 708 ~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~ 785 (876)
T 1qgr_A 708 SVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHP 785 (876)
T ss_dssp GGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCG
T ss_pred HhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 8999999999999863222222222 235566666665432 2677888888888876532210 000
Q ss_pred -CCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHHHHHHHHHhC
Q 009623 452 -NTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEKSVKLLETYW 494 (530)
Q Consensus 452 -~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~a~~il~~~~ 494 (530)
.....+|...+ +..+..+..++ ++.++..|...+..+.
T Consensus 786 ~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 826 (876)
T 1qgr_A 786 DVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp GGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 00112222222 34444444555 7889998888887654
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.59 E-value=7.3e-14 Score=141.52 Aligned_cols=390 Identities=11% Similarity=0.084 Sum_probs=269.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhH
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.+..++..+.++|..++..|-..|.++.... ..+.+..|+.++.+++ ++.+|..|+..|.++........
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~ 72 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI 72 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHH
Confidence 3567788888999999999999998864310 1345677888887653 48999999999999976431111
Q ss_pred HH-----------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC--chhHH
Q 009623 153 KV-----------VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSML 219 (530)
Q Consensus 153 ~~-----------~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~--~~~~~ 219 (530)
.. -....+-..|+..+.++++.+ ..++.+++.++....... .-.+.++.|+..+ .+. +..++
T Consensus 73 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l-~~~~~~~~~r 147 (462)
T 1ibr_B 73 KAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANV-TNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHH-HCTTCCHHHH
T ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHh-ccCCCCHHHH
Confidence 00 001123356777888877778 889999999975421100 1235788888888 455 88999
Q ss_pred HHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhC
Q 009623 220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLM 295 (530)
Q Consensus 220 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~lL~ 295 (530)
..++.+|..++... +.........+++.+..++.+. ++.++..++++++++...-.+... .....-+++.+...+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 99999999999753 2222334466888899999887 789999999999987644322111 0111124666777788
Q ss_pred CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--------------
Q 009623 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-------------- 361 (530)
Q Consensus 296 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-------------- 361 (530)
+.++.++..++++++.++...+......+..++++.++..+.+. ++.++..|++.+..++.....
T Consensus 228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 88899999999999999876554322222226788888888887 899999999999998753210
Q ss_pred -------HHHHHHHhCcHHHHHHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh
Q 009623 362 -------QIQAVIEANIIGPLVALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP 427 (530)
Q Consensus 362 -------~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~ 427 (530)
.....+ ..++|.++..+.. .++.+|..|+.+|..++........ ..+++.+...+.+.+.
T Consensus 307 ~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~ 380 (462)
T 1ibr_B 307 PEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDW 380 (462)
T ss_dssp SSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSH
T ss_pred ccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCCh
Confidence 011111 3467777777743 2467999999999999875432221 2457778888899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009623 428 RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 428 ~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
.++..++.++..+....... .+...+ ...+..|..+..++++.|+..|...+.++..
T Consensus 381 ~~r~aal~~l~~l~~~~~~~---------~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEPS---------QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCTT---------TTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHH---------HHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999988633211 011112 3457788888899999999999999998865
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.58 E-value=1.9e-14 Score=145.92 Aligned_cols=362 Identities=14% Similarity=0.094 Sum_probs=244.8
Q ss_pred CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCc----------HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHH
Q 009623 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPP----------IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWAL 141 (530)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~----------~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L 141 (530)
.+..++..+.++ ++.++..|+..|++++.....+. +..-....+-..|+..+.+++ +.+ ..++.++
T Consensus 36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i 113 (462)
T 1ibr_B 36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV 113 (462)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence 345566666653 67899999999999985421000 000012234556778888777 677 8899999
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCC-chh
Q 009623 142 TNIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQP-KLS 217 (530)
Q Consensus 142 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~-~~~ 217 (530)
+.++....... .-.++++.|+..+.++ ++.+++.++.+|+.++.+. +..-.... ..+++.++..+.... +..
T Consensus 114 ~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~ 189 (462)
T 1ibr_B 114 AGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNN 189 (462)
T ss_dssp HHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHH
Confidence 99987321100 0136789999999887 8999999999999998643 22111111 236677778884332 789
Q ss_pred HHHHHHHHhhhhccCCC-C-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009623 218 MLRNATWTLSNFCRGKP-Q-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (530)
Q Consensus 218 ~~~~a~~~L~~L~~~~~-~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 295 (530)
++..+++++.++..... . ........+++.+...+.+.+++++..+++++..++..........+..++++.++..+.
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (462)
T 1ibr_B 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (462)
T ss_dssp HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999998764321 0 111111235777777778889999999999999988654432221222266777778888
Q ss_pred CCCchhHHHHHHHHhHhhcCCch-----------------hhHHHh---hcCchHHHHHhhcCC------CchhHHHHHH
Q 009623 296 HPSPSVLIPALRTVGNIVTGDDM-----------------QTQCVI---EYQALPCLLNLLSGN------YKKSIKKEAC 349 (530)
Q Consensus 296 ~~~~~~~~~a~~~L~nl~~~~~~-----------------~~~~~~---~~~~l~~L~~lL~~~------~~~~v~~~a~ 349 (530)
+.++.++..++..++.++..... ....++ -..++|.++..+... .+..+|..|+
T Consensus 270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~ 349 (462)
T 1ibr_B 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG 349 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHH
Confidence 88999999999999888753200 000011 134567777777432 1457999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHH
Q 009623 350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 429 (530)
Q Consensus 350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v 429 (530)
.+|..++...++ .++ ..+++.+...+.+.++.+|..|+.+|+.++.+..++.....+ ..+++.++.++.++++.+
T Consensus 350 ~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~V 424 (462)
T 1ibr_B 350 VCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVV 424 (462)
T ss_dssp HHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHH
Confidence 999999874332 122 246778888888889999999999999999865422211111 457889999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q 009623 430 VTVCLEGLENILKVGEA 446 (530)
Q Consensus 430 ~~~al~~l~~ll~~~~~ 446 (530)
+..++++|.++......
T Consensus 425 r~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 425 RDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999976543
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.58 E-value=2.6e-13 Score=148.99 Aligned_cols=276 Identities=19% Similarity=0.213 Sum_probs=194.0
Q ss_pred HHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcH-HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009623 75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
++.++..+.++ ++.++..|+.++..++...+ ... .......+++.+.+.+.+++ +.++..++.+|..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK-ANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH-HHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 34455566665 68899999999998875421 111 01111235777788777766 899999999999999866555
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch------------------hhhhH--hhcCChHHHHHhhc
Q 009623 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR------------------CRDLV--LSQGGLVPLLAQLN 211 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~------------------~~~~i--~~~~~i~~Ll~ll~ 211 (530)
....+...+++.++..+.+.++.++..+++++..++..... ..... .-...++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 44444447788888888888899999999999888743110 00000 00234666677763
Q ss_pred C------CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHh
Q 009623 212 G------QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEA 284 (530)
Q Consensus 212 ~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~ 284 (530)
. +.+..++..+..++..++...+ ......+++.+...+.+.+..++..++++++.++.... +...... .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 2 2346788899999988887543 13356677888888888899999999999999997654 3333333 3
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh-HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009623 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (530)
Q Consensus 285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (530)
.+++.++..+.++++.++..|++++++++...+... ..-.-..+++.++..+.+ ++.++..|+|++++++..
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999997544321 001113567788888865 478999999999999853
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.57 E-value=4e-13 Score=140.53 Aligned_cols=369 Identities=14% Similarity=0.105 Sum_probs=237.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..+.+.++++++.++..|++++.++.. + .+. ..+++.+..++.+++ +.+|..|+.++.++...+++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence 56778888889999999999999998852 1 122 346888999999988 99999999999999987666442
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC--------------CCchhHH
Q 009623 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------QPKLSML 219 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~--------------~~~~~~~ 219 (530)
++++.+..+|.+.++.++..|+++|+.++...+.....+ ...++.++++|.. ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 678888899999999999999999999987765422222 2356666655531 2355566
Q ss_pred HHHHHHhhhhccCCCCCC--------------------------------------hhhhhchHHHHHHhhcCCChhHHH
Q 009623 220 RNATWTLSNFCRGKPQPP--------------------------------------FDQVSPALPALAHLIHSNDDEVLT 261 (530)
Q Consensus 220 ~~a~~~L~~L~~~~~~~~--------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~ 261 (530)
..++.+|..++...+... ......+++.|..++.+.++.++.
T Consensus 252 ~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~ 331 (618)
T 1w63_A 252 VRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY 331 (618)
T ss_dssp HHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence 666666666665431100 001112445566666666777777
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc
Q 009623 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341 (530)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 341 (530)
.++.+|..++...+. .+. .....++.++.+++..++..|+.++..++.... .. .+++.|...+.+. +
T Consensus 332 ~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~-----~iv~eL~~~l~~~-d 398 (618)
T 1w63_A 332 VALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IR-----GMMKELLYFLDSC-E 398 (618)
T ss_dssp HHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--TH-----HHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHhhCHH----HHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HH-----HHHHHHHHHHHhC-C
Confidence 777777766643322 121 345567777777777788888888877775332 11 2356777777777 8
Q ss_pred hhHHHHHHHHHHHHhcCC---HH-HHHHHH----H------------------------hCcHHHHHHHHhcC--chhHH
Q 009623 342 KSIKKEACWTVSNITAGN---RE-QIQAVI----E------------------------ANIIGPLVALLENA--EFDIK 387 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~---~~-~~~~l~----~------------------------~~~i~~L~~ll~~~--~~~v~ 387 (530)
.++|..++.+++.++... .. .+..++ . ..++..|++.+.+. ...+.
T Consensus 399 ~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~ 478 (618)
T 1w63_A 399 PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV 478 (618)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHH
Confidence 899999999999998732 11 111111 0 11344455555532 23344
Q ss_pred HHHHHHHHHhhcCC-------------CHHHHHHHHHcCChHHHHhccC--CCChHHHHHHHHHHHHHHhhhhhhhhcCC
Q 009623 388 KEAAWAISNATSGG-------------THEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGN 452 (530)
Q Consensus 388 ~~a~~aL~nl~~~~-------------~~~~~~~l~~~~~l~~L~~lL~--~~~~~v~~~al~~l~~ll~~~~~~~~~~~ 452 (530)
..++|+|+..+... .+. .+++.|..+++ ..++.++..++.++.++....+..
T Consensus 479 ~~~~wilGEy~~~i~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~----- 545 (618)
T 1w63_A 479 QVAAWCIGEYGDLLVSGQCEEEEPIQVTED--------EVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT----- 545 (618)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSSCCCCCCHH--------HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC-----
T ss_pred HHHHHHHhhhHHHhcccccccccccCCCHH--------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch-----
Confidence 45777777665310 111 12444545553 467889999999998887654321
Q ss_pred CCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009623 453 TDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
...+ ...|.....+.|.+|+++|...+.-+..
T Consensus 546 ------~~~l-----~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 546 ------VNRI-----KKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp ------HHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ------HHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 1112 2345666789999999999987765443
No 57
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.53 E-value=1.5e-12 Score=147.99 Aligned_cols=405 Identities=12% Similarity=0.116 Sum_probs=270.6
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.++.++..+.+.|++++..|...|.+.+.... .....-....+++.+++.+.+.+ +.+|..|+.+|+.++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~-~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccc-cCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 46889999999999999999999998875431 11110111246888999998777 999999999999999754431
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh-----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009623 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR-----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
.+ ..+++.|+..+.++++.+|..++.+|+.++....... ..-....+++.|+..+.++.+..++..++.++..
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 11 1356888888888888999999999999985433210 0111234788888888435788999999999999
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-chhHHHHHH
Q 009623 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALR 307 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~~~~a~~ 307 (530)
++...+..-......+++.+...+.++++.++..++.+++.++...... ++ ..+++.++..|.+.+ +.++..++.
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHH
Confidence 9864332222345778888999999889999999999999998765432 12 256777877776543 467888999
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-------
Q 009623 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE------- 380 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------- 380 (530)
+++.++...+..... .-..+++.++..+.+. ++.+|..+++++..++...+..+...+ ..+++.++..+.
T Consensus 237 ~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCC
Confidence 999998754432211 1246899999999887 899999999999999874332221111 123444433331
Q ss_pred ------------------------------cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHH
Q 009623 381 ------------------------------NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430 (530)
Q Consensus 381 ------------------------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~ 430 (530)
+..+++|..|+.++..++.... +....+ -..+++.+...+.+.++.++
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~-~~~l~~~l~~~l~d~~~~Vr 391 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENVK 391 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHHH
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHH-HHHHHHHHHHHcCCCchHHH
Confidence 0124689999999999987433 212222 24578888888988899999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCC--------CCc-hhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009623 431 TVCLEGLENILKVGEAEKNLGN--------TDV-NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
..++.++..++........... .+. ..+...+ ...++.+.....++++.++..+...+..+..
T Consensus 392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 9999999888764311000000 000 0011111 1234555566777888888777777776543
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=6.6e-12 Score=112.65 Aligned_cols=188 Identities=22% Similarity=0.212 Sum_probs=158.1
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC
Q 009623 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237 (530)
Q Consensus 158 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 237 (530)
.+.++.|+..|.++++.++..+++.|+.+.. .+.++.|+.++ .+++..++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 3568999999999999999999999998742 24688899999 67899999999999998863
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009623 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 317 (530)
...++.|..++.++++.++..++++|+.+.. .+.++.|+.++.++++.++..|+++|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 4578999999999999999999999998853 2467889999999999999999999999853
Q ss_pred hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009623 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
...++.|..++.++ ++.+|..|+++|+.+.. + ..++.|..++.++++.||..|..+|.++
T Consensus 142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 24678899999888 99999999999999943 2 3677888999999999999999999998
Q ss_pred hcCC
Q 009623 398 TSGG 401 (530)
Q Consensus 398 ~~~~ 401 (530)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 8754
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.44 E-value=1.7e-11 Score=109.03 Aligned_cols=185 Identities=23% Similarity=0.226 Sum_probs=157.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh
Q 009623 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (530)
Q Consensus 159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 238 (530)
+..+.++..|.++++.++..++++|+.+.. .+.++.|+.++ .+++..++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 456889999999999999999999998742 23688899999 78899999999999998853
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009623 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 318 (530)
...++.|..++.++++.++..++++|+.+.. ...++.|..++.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 3578999999999999999999999998753 1467888999999999999999999999853
Q ss_pred hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009623 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
...++.|..++.++ ++.+|..|+++|+.+. .+ ..++.|..++.++++.||..|..+|.++.
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34688899999988 9999999999999993 22 26778888999999999999999999875
Q ss_pred c
Q 009623 399 S 399 (530)
Q Consensus 399 ~ 399 (530)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 60
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.44 E-value=6.8e-12 Score=142.53 Aligned_cols=397 Identities=12% Similarity=0.125 Sum_probs=258.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc----HHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCC
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP----IEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~----~~~~~~~g~v~~Lv~ll~~-~~~~~i~~~a~~~L~~l~~~~ 148 (530)
.++.++..+.++++.++..|+.++..++..-.... ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 46777778888888899999999998876542220 1111224579999999984 55 899999999999998522
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009623 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
+....... ..+++.|+..+.++++.++..++.+|+.++...+. .+ -...++.++..+....+...+..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11110000 23467778888888899999999999999865442 11 223577788877544445677778888888
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC------------
Q 009623 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------------ 296 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~------------ 296 (530)
++...+..-......++|.+...+...+++++..+++++..++..........+ ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 887543322234578899999999988999999999999888765332222122 1344444444421
Q ss_pred -------------------------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009623 297 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (530)
Q Consensus 297 -------------------------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (530)
..|.++..|+.+++.++...+......+ ..+++.+...+.+. ++.+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1356788999999999875443222233 46788888888777 88999999998
Q ss_pred HHHHhcC--C-----------------HHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009623 352 VSNITAG--N-----------------REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 412 (530)
Q Consensus 352 L~nl~~~--~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 412 (530)
+..++.. . .......+ ..+++.+...+.+.++.+|..++.+|..++.........+ -.
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~--l~ 474 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH--IP 474 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG--HH
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHH--HH
Confidence 8877641 1 11111222 2467777777988899999999999999887532111111 12
Q ss_pred CChHHHHhccCCCCh--HHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009623 413 GCIKPLCDLLVCPDP--RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490 (530)
Q Consensus 413 ~~l~~L~~lL~~~~~--~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il 490 (530)
.+++.+...|.+..+ .++..++..+..++...... .+...+. ..+..|.....+.+..+...|...+
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~---------~~~~~l~--~llp~L~~~l~d~~~~v~~~al~~l 543 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ---------VFHPHVQ--ALVPPVVACVGDPFYKITSEALLVT 543 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG---------GGHHHHT--TTHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH---------HHHhHHH--HHHHHHHHHHcccchHHHHHHHHHH
Confidence 457788888887654 78888888888887532111 1222222 2355565556667777766665555
Q ss_pred HHh
Q 009623 491 ETY 493 (530)
Q Consensus 491 ~~~ 493 (530)
..+
T Consensus 544 ~~l 546 (1230)
T 1u6g_C 544 QQL 546 (1230)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.43 E-value=8.8e-12 Score=111.83 Aligned_cols=188 Identities=22% Similarity=0.186 Sum_probs=157.9
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009623 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 194 (530)
.+.++.|+.+|.+++ +.++..|+++|+.+.. .+.++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457899999999887 9999999999998764 2568899999999999999999999999842
Q ss_pred hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009623 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.+.++.|+.++ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23678888998 78899999999999998854 3578999999999999999999999999843
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009623 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
...++.|..++.++++.++..++.+|+.+.. ..+++.|..++.++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 1467889999999999999999999999853 23577888999888 99999999999999
Q ss_pred HhcCC
Q 009623 355 ITAGN 359 (530)
Q Consensus 355 l~~~~ 359 (530)
+....
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 97643
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.41 E-value=1.4e-10 Score=120.90 Aligned_cols=370 Identities=12% Similarity=0.092 Sum_probs=251.3
Q ss_pred CCCchHHhhhhhhHHHHHHHHhhh----HHHHhhhhcc-----ccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHH
Q 009623 19 AVDADEGRRRREDNMVEIRKNKRE----ESLQKKRREG-----LQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGV 89 (530)
Q Consensus 19 ~~~~~~~~~~r~~~~~~lRk~~~~----~~l~~~R~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~ 89 (530)
..+.++.+++=.....++|++-+. ..-.+++... .-.+.. . -.....+++.+.+++...
T Consensus 23 ~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d--~----------s~~~~~vvkl~~s~~~~~ 90 (621)
T 2vgl_A 23 CKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD--I----------DFGHMEAVNLLSSNRYTE 90 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC--C----------CSCHHHHHHGGGCSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC--C----------chhHHHHHHHhcCCCHHH
Confidence 445567776666777788877662 1222222110 011110 0 147789999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-
Q 009623 90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL- 168 (530)
Q Consensus 90 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL- 168 (530)
+..+.-.+..++.. .+..-.+ ++..+.+=+.+++ +.++..|+++|+++.. ++.... +++.+.+++
T Consensus 91 Krl~YL~l~~~~~~--~~e~~~L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~~-----l~~~v~~~l~ 156 (621)
T 2vgl_A 91 KQIGYLFISVLVNS--NSELIRL----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAEA-----FAGEIPKILV 156 (621)
T ss_dssp HHHHHHHHHHSCCC--CHHHHHH----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHHH-----HTTHHHHHHH
T ss_pred HHHHHHHHHHHccC--CcHHHHH----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHHH-----HHHHHHHHHh
Confidence 99998888887654 2221111 3566777778888 9999999999999965 554443 468899999
Q ss_pred -CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHH
Q 009623 169 -YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247 (530)
Q Consensus 169 -~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~ 247 (530)
.+.++.+|..|+.++.++....|+. +...+.++.+.++| .+.++.++.+|+.++..++...+. .....+|.
T Consensus 157 ~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~----~~~~~~~~ 228 (621)
T 2vgl_A 157 AGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPE----EFKTSVSL 228 (621)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHH----HHTTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChH----HHHHHHHH
Confidence 8899999999999999998755532 22247888999999 788999999999999999876532 22334444
Q ss_pred HH----HhhcCC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhh---------CCCCc-
Q 009623 248 LA----HLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFL---------MHPSP- 299 (530)
Q Consensus 248 L~----~ll~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL---------~~~~~- 299 (530)
++ .++... ++..+..++..+..++... ++....+. +++..++..+ .+.+.
T Consensus 229 ~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~ 306 (621)
T 2vgl_A 229 AVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAK 306 (621)
T ss_dssp HHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHH
T ss_pred HHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchH
Confidence 44 443221 6788999999998887643 33333222 2344444332 12222
Q ss_pred -hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH
Q 009623 300 -SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL 378 (530)
Q Consensus 300 -~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 378 (530)
.+...|+.++..+.. .+... ..++..|..++.++ ++.+|..|+..|..++...+. . ..+ ......++..
T Consensus 307 ~aVl~ea~~~i~~l~~-~~~~~-----~~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~~-~~~~~~i~~~ 376 (621)
T 2vgl_A 307 NAVLFEAISLIIHHDS-EPNLL-----VRACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EAV-KTHIETVINA 376 (621)
T ss_dssp HHHHHHHHHHHHHHCC-CHHHH-----HHHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HHH-HTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-cHHHH-----HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HHH-HHHHHHHHHH
Confidence 677888888888752 22211 23567788888877 999999999999999876432 1 122 2467788888
Q ss_pred Hh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009623 379 LE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 379 l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~ 442 (530)
+. ++|..++..++..|..++.. ...+. ++..|...+...|.+++..++.++..+..
T Consensus 377 L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 377 LKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 88 88999999999999999863 33333 45566666666777777777777776653
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.41 E-value=1.9e-11 Score=108.75 Aligned_cols=184 Identities=22% Similarity=0.190 Sum_probs=157.5
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009623 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.+|.++++.++..++++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 45788999999998 9999999999998764 2467899999999999999999999999842
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009623 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
...++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 13678888988 78899999999999998854 3578899999999999999999999999853
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009623 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 276 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
...++.|..++.++++.++..|+++|+.+.. ...++.|..++.++ ++.+|..|.++|.++
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 2567889999999999999999999999842 23577888899888 999999999999987
Q ss_pred h
Q 009623 356 T 356 (530)
Q Consensus 356 ~ 356 (530)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.28 E-value=4.6e-10 Score=116.98 Aligned_cols=330 Identities=12% Similarity=0.109 Sum_probs=222.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHhcCChhh
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL--LREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll--~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
.+..+.+.++++++.++-.|++++.++.. +. +. ..+++.+.+++ .+.+ +.+|..|+.++..+...+++.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e---~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS----RE---MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH---HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH---HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence 45677778889999999999999998842 21 22 23578888998 7777 999999999999999866654
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHH----hhcC--C----------Cc
Q 009623 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA----QLNG--Q----------PK 215 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~----ll~~--~----------~~ 215 (530)
.. ..+.++.+..+|.+.++.++..|+.+|..++...+..- ...++.++. ++.. . ++
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 32 24789999999999999999999999999987665311 113333333 3311 1 15
Q ss_pred hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh---------cCCC--hhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009623 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA 284 (530)
Q Consensus 216 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll---------~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 284 (530)
+-.+...+..+..++.............+++.++..+ .+.+ ..+...++.++..+.. .++...
T Consensus 255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~----- 328 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV----- 328 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----
T ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----
Confidence 6788888888888875321111111222333333222 1122 3788888888888863 222222
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHH
Q 009623 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
.++..|..++.+.++.++..++.++..++...+.. . .+ ......++..|. ++ +..+|..+..+|..++. +.++
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv 402 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA 402 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence 35677888898899999999999999998765421 1 22 345778888888 77 89999999999999974 3444
Q ss_pred HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009623 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~ 443 (530)
.. ++..|...+...+.+++..++.+++.++..-.+.. . -++..|++++......+...+...+..++..
T Consensus 403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~-----~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~ 471 (621)
T 2vgl_A 403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-T-----WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471 (621)
T ss_dssp HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-H-----HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-H-----HHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 33 55678888888899999999999999875211111 1 1356666666544333444444455555543
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.14 E-value=5e-09 Score=86.25 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=177.0
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC
Q 009623 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236 (530)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 236 (530)
+..++..++.+|.++-+.++.+|+..+.+++...|+.... .+..|+.++.++....+......+++.++...|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 3456788999999988999999999999999888875544 456777787788888888888899999987653
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC
Q 009623 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 316 (530)
....+++|.+..-..-.|+.++.+...+|..++...+.... +++.-+..++.+.+..-+..|+..++.+....
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 46678889888888888999999999999999988776544 56677899999988888888898888887655
Q ss_pred chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHH
Q 009623 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396 (530)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 396 (530)
.... ...+|.|..+|.+. +.-||..|.-+|.+++..++..+. + +..-++-+++.+..|+..+..+|+.
T Consensus 176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRk-i-----i~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRK-V-----VIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHH-H-----HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHH-H-----HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4433 35799999999999 999999999999999998887433 2 2334455677788899999999998
Q ss_pred hhcC
Q 009623 397 ATSG 400 (530)
Q Consensus 397 l~~~ 400 (530)
++.-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8753
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.09 E-value=1.8e-08 Score=106.28 Aligned_cols=273 Identities=14% Similarity=0.140 Sum_probs=192.5
Q ss_pred CHHHHHHhhc---CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 009623 74 NLPVMVAGVW---SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTN 143 (530)
Q Consensus 74 ~l~~l~~~l~---s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-------~~~i~~~a~~~L~~ 143 (530)
.+..+-+.|. ++++.++.-|+..|.-+-++... . ++..|...|.+++ .+.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4555555666 56788888999999877655321 1 3666777776543 36789999999999
Q ss_pred HhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH
Q 009623 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (530)
Q Consensus 144 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~ 223 (530)
+..++... .+++.|..++.+++..+++.++.+|+.+-.+... . .++..|+..+..+.+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHH
Confidence 87655321 1356788888777777788999999987433321 1 14566677665566788999999
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHh-hCCCCc
Q 009623 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSP 299 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~ 299 (530)
.+|..+..+. ...++.++..|. +.++.++..++.+++. ...++... ++.|+.. ..+.+.
T Consensus 530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 9999887664 234566666665 4678888887777654 33344333 3333333 345677
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009623 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 300 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 379 (530)
.++..|+.+||.++.+.++. ++.++.+|.+..++.+|..|+++|+.++.+++.. .++..|..+.
T Consensus 593 ~VRraAViaLGlI~~g~~e~---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYTT---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCSS---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence 89999999999998877632 4556665544449999999999999999876531 3667888888
Q ss_pred hcCchhHHHHHHHHHHHhhcCCC
Q 009623 380 ENAEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 380 ~~~~~~v~~~a~~aL~nl~~~~~ 402 (530)
.+.+..|++.|+.+|+.+..+.+
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCc
Confidence 88999999999999999987654
No 67
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.07 E-value=3.4e-09 Score=111.89 Aligned_cols=217 Identities=16% Similarity=0.122 Sum_probs=156.4
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHhhhCC-Cc
Q 009623 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGD-SP 191 (530)
Q Consensus 114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~nl~~~-~~ 191 (530)
+..++| +++.|++++ +..|..|+++|++|+. ++..+..+...|++..++ .+|.+++.+++..|+++|.||+.+ .+
T Consensus 33 ~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 345555 556789888 8999999999999997 788888888888887765 568889999999999999999954 56
Q ss_pred hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009623 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
..+..+...|++++|..++. .....+..+......... .....+ .++...++.+|.+++
T Consensus 110 d~~~~l~~~~il~~L~~~l~---------~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~L~ 168 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAK---------AVLETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGLLA 168 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHH---------HHHHHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHH---------hhHHHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHHHH
Confidence 77888899999999999983 122222222211100000 001111 124456677788888
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhHhhcCCchhhHHHhhcCchH---HHHHhhcCCCchhHH
Q 009623 272 DGTNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP---CLLNLLSGNYKKSIK 345 (530)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~---~L~~lL~~~~~~~v~ 345 (530)
..+++....+...+.++.|+..|.+. ...++..|+.+|..++..++...+.+.+.+... .+..+..+ ....+
T Consensus 169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~ 246 (684)
T 4gmo_A 169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDPRA 246 (684)
T ss_dssp HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCTTH
T ss_pred hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcHHH
Confidence 77777777788888999999988543 357999999999999999988888887766433 33333333 34457
Q ss_pred HHHHHHHHHHh
Q 009623 346 KEACWTVSNIT 356 (530)
Q Consensus 346 ~~a~~~L~nl~ 356 (530)
..+|++|.|+.
T Consensus 247 ~la~giL~Ni~ 257 (684)
T 4gmo_A 247 VMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhHh
Confidence 88999999974
No 68
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.94 E-value=5.6e-08 Score=92.36 Aligned_cols=277 Identities=13% Similarity=0.075 Sum_probs=165.2
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009623 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
....+++.++++|...+...--.+..++... .+.+ + ++..|.+=+++++ +-++..|+++|++|.. ++...
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence 5677888999999999998888888776542 2322 1 4677888888888 9999999999999987 44444
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009623 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
. +.+.+.+.|.+.++-++..|+.+..++....|+.. .+++..+-+++ .+.++.++.+|+.++..++..+
T Consensus 139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 3 35778889999999999999999999998877632 25888888888 7788999999999999998753
Q ss_pred CCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009623 234 PQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L 309 (530)
...+..++..+... ++..+...++.+..+...+ +. ....+++.+...|++.++.+...|++++
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 11334444444332 4666666666665555443 21 2236778888999999999999999999
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHH
Q 009623 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 389 (530)
..+...... .. ..++..|..++.++ ++.+|..|...|..++...|..++. .-..+..++.+++..+...
T Consensus 275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence 888652221 11 34456677778888 9999999999999998876665432 3346677788888777666
Q ss_pred HHHHHH
Q 009623 390 AAWAIS 395 (530)
Q Consensus 390 a~~aL~ 395 (530)
|..+|.
T Consensus 344 Aittll 349 (355)
T 3tjz_B 344 AITTLL 349 (355)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 665554
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.93 E-value=5.6e-08 Score=83.80 Aligned_cols=226 Identities=17% Similarity=0.159 Sum_probs=172.3
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009623 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 321 (530)
...+..|..++...|+.++.+++.+|..+....++......-..+++.++.++.+.+..+...|+++++.+..+.+-.-.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45778899999999999999999999999876544444444447899999999999999999999999999987663322
Q ss_pred HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009623 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
.+. .+...|..++.++ ++-++.+|+-.++-+--.++. .+++..+..++.+.+.+++..+..++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 222 3467788888877 999999999999998433211 136778888898889999999999999999843
Q ss_pred -CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCC
Q 009623 402 -THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDN 479 (530)
Q Consensus 402 -~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~ 479 (530)
+++. -.+++.-+-++|+++|+.++..++.++..++...-. +| ...-+ .+......+|. -...
T Consensus 182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--------~~-~~~~~--~~~~~~v~~l~~~~~~ 245 (265)
T 3b2a_A 182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--------EN-VKIEL--LKISRIVDGLVYREGA 245 (265)
T ss_dssp SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--------SC-CHHHH--HHHHHHHHHGGGCSSC
T ss_pred CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--------Hh-HHHHH--HHHHHHHHHHHHhcCC
Confidence 2221 235677888899999999999999999999876322 11 12212 34456667777 6788
Q ss_pred HHHHHHHHHHHHHh
Q 009623 480 AEIYEKSVKLLETY 493 (530)
Q Consensus 480 ~~v~~~a~~il~~~ 493 (530)
|.+..+|..+-+..
T Consensus 246 ~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 246 PIIRLKAKKVSDLI 259 (265)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 88999998776653
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.86 E-value=7.1e-07 Score=73.65 Aligned_cols=217 Identities=14% Similarity=0.163 Sum_probs=166.7
Q ss_pred hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHH
Q 009623 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDK 277 (530)
Q Consensus 199 ~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~ 277 (530)
+..++..++.+| ++.-..++.+|+..++.++...+ ......+..|+.+++ +..-..-..+..+++.++...++.
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 445788888988 66677899999999999998754 234555666666655 445666678889999998877765
Q ss_pred HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009623 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 278 ~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+. +++|.+..-..-++++++....++|+.++..++... .+++.-+..++.+. +..=|..|...++.+..
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltsk-d~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSK-NREDKLTALNFIEAMGE 173 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence 55 567888888888899999999999999999888654 35667888999987 77777777778877766
Q ss_pred CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHH
Q 009623 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGL 437 (530)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l 437 (530)
....++ ..++|.|+.+|.+.+.-||..|..+|.+++.. ++..++. +...+.=+++.+..+....-.+|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRki------i~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV------VIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence 554433 35789999999999999999999999999997 4444333 33444556777777888888888
Q ss_pred HHHHhh
Q 009623 438 ENILKV 443 (530)
Q Consensus 438 ~~ll~~ 443 (530)
..+.-.
T Consensus 242 ~rl~l~ 247 (253)
T 2db0_A 242 SRLLLL 247 (253)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 888654
No 71
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.85 E-value=1.4e-08 Score=107.31 Aligned_cols=196 Identities=15% Similarity=0.087 Sum_probs=149.2
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH-HHhhCCCCchhHHHHHHHHhHhhcCC-chh
Q 009623 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL-AEFLMHPSPSVLIPALRTVGNIVTGD-DMQ 319 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L-~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~ 319 (530)
..++|. +..|+++++..+..||++|++++. ++.....+...+++..+ ..+|.+++..++..|+++|+||+... ...
T Consensus 34 ~~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPV-LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHH-HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHH-HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 345554 456899999999999999999996 45566777788888765 55788899999999999999998653 566
Q ss_pred hHHHhhcCchHHHHHhhcCCCc---------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH
Q 009623 320 TQCVIEYQALPCLLNLLSGNYK---------------------KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL 378 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~---------------------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 378 (530)
...++..|+++.|..++... . ..+...++++|.++|.++.+....+...+.++.|+..
T Consensus 112 ~~~l~~~~il~~L~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAV-LETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHH-HHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhh-HHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 67888999999999988531 1 1234567889999998888888888888999999998
Q ss_pred HhcC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH---HHHhccCCCChHHHHHHHHHHHHHHh
Q 009623 379 LENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK---PLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 379 l~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~---~L~~lL~~~~~~v~~~al~~l~~ll~ 442 (530)
+.+. ..+++..|+.+|.+++.. +.+....+.+.+... .+..+.+..++ .+..+++.+.+++.
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence 8544 368999999999999986 567788877766533 33333334443 34456778888764
No 72
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.84 E-value=1.6e-06 Score=84.11 Aligned_cols=322 Identities=12% Similarity=0.114 Sum_probs=195.9
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCc---hhhhhHhhcCC-hHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009623 158 HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSP---RCRDLVLSQGG-LVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 158 ~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~---~~~~~i~~~~~-i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..++..++.+|.. ...++.+..+..+..+..+.+ .....+..... ...+........+.-....++.++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 3456778888875 778899999999999988776 22222222221 222333332344555556666666666543
Q ss_pred CCCCChhhhhchHH--HHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhhCC----C------
Q 009623 233 KPQPPFDQVSPALP--ALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFLMH----P------ 297 (530)
Q Consensus 233 ~~~~~~~~~~~~l~--~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~----~------ 297 (530)
.+. .......++. -+...+... +.+.+.-++.++..+...+.. ...+.+. ..++.++.++.. .
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 322 3333333444 344445442 344455567777777665443 3444432 245555543321 1
Q ss_pred -------CchhHHHHHHHHhHhhcCCchhhHHHhhcCch--HHHHHhhcCCCchhHHHHHHHHHHHHhcCCH----HHHH
Q 009623 298 -------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL--PCLLNLLSGNYKKSIKKEACWTVSNITAGNR----EQIQ 364 (530)
Q Consensus 298 -------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~ 364 (530)
...++..++.+++-++. ++.....+...++. +.|+.+++......+-+-+..++.|+....+ ..+.
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 23567888899988876 44455555555543 6677777766578899999999999988542 2233
Q ss_pred -HHHHhCcHHHHHHHHhcC---chhHHHHHHHHHHHhhc---------------------CC----C----HHHHHHHHH
Q 009623 365 -AVIEANIIGPLVALLENA---EFDIKKEAAWAISNATS---------------------GG----T----HEQIKFLVI 411 (530)
Q Consensus 365 -~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~---------------------~~----~----~~~~~~l~~ 411 (530)
.++..++ +.++..|... |+++....-.....+-. -. + .+....+.+
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 2333445 4455656543 56655443332222210 00 1 111112222
Q ss_pred c--CChHHHHhccCC----------CChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCC
Q 009623 412 Q--GCIKPLCDLLVC----------PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479 (530)
Q Consensus 412 ~--~~l~~L~~lL~~----------~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 479 (530)
. .++..|+++|++ .|+.++..|+.=|+.+++..+. .+..+++.||.+.+.+|+.|+|
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-----------gr~i~~~lg~K~~VM~Lm~h~d 460 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-----------SIDVLDKTGGKADIMELLNHSD 460 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-----------HHHHHHHHSHHHHHHHHTSCSS
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-----------hhHHHHHcCcHHHHHHHhcCCC
Confidence 2 237788888873 4788899999999999988765 3678889999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q 009623 480 AEIYEKSVKLLETYW 494 (530)
Q Consensus 480 ~~v~~~a~~il~~~~ 494 (530)
++|+..|...++++.
T Consensus 461 ~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 461 SRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 73
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.84 E-value=5.4e-08 Score=92.44 Aligned_cols=309 Identities=13% Similarity=0.108 Sum_probs=174.0
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009623 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165 (530)
Q Consensus 86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 165 (530)
|+.-...++..+..+...+..-+..++ ..+.+.+++++.+.+ ..++.-....+.+++...++.. =++..|.
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~ 110 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDVI------IVTSSLT 110 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCGG------GGHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHHH------HHHHHHH
Confidence 444444455555544443312111121 234666788999988 8999999888888888533322 2467888
Q ss_pred HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchH
Q 009623 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245 (530)
Q Consensus 166 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l 245 (530)
+=+.++++-++-.|+++|++|.... .-+. ..+++-+.+ .+.++.+++.|+.+...|....| ....+.+
T Consensus 111 kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p----e~v~~~~ 178 (355)
T 3tjz_B 111 KDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF----DVVKRWV 178 (355)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH----HHHHTTH
T ss_pred hhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH----HHHHHHH
Confidence 8889999999999999999996443 1111 455566666 88999999999999999987653 2446788
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhHhhcCC-chhhH
Q 009623 246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGD-DMQTQ 321 (530)
Q Consensus 246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~~~~~a~~~L~nl~~~~-~~~~~ 321 (530)
+.+..++.+.++.++.+++.++..+...+... +..++..+... ++-.+...++.++.++..+ +..
T Consensus 179 ~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-- 247 (355)
T 3tjz_B 179 NEAQEAASSDNIMVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-- 247 (355)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh--
Confidence 89999999999999999999999987655322 23334444332 3445555666666666544 222
Q ss_pred HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009623 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
...+++.+..+|++. ++.|..+|++++..+...... .. ..++..|..++.++++.+|..|+..|..++..
T Consensus 248 ---~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~- 317 (355)
T 3tjz_B 248 ---DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK- 317 (355)
T ss_dssp ------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred ---HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-
Confidence 245677888889988 999999999999998552222 11 23456677778889999999999999998885
Q ss_pred CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 402 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 402 ~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
.|+... .+-..+.+++.++|..+...|+ ..+++-|
T Consensus 318 ~P~~v~-----~~n~~ie~li~d~n~sI~t~Ai---ttllktg 352 (355)
T 3tjz_B 318 HPSAVT-----ACNLDLENLVTDANRSIATLAI---TTLLKTG 352 (355)
T ss_dssp -------------------------------------------
T ss_pred CcHHHH-----HHHHHHHHHccCCcHhHHHHHH---HHhhhcc
Confidence 233221 2455677888888877766554 4455443
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.81 E-value=1.2e-06 Score=92.70 Aligned_cols=270 Identities=14% Similarity=0.117 Sum_probs=186.3
Q ss_pred HHHHHHhhc---CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHhh
Q 009623 118 VPRFVEFLL---REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS--------DDVREQAVWALGNI 186 (530)
Q Consensus 118 v~~Lv~ll~---~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~~~~~a~~~L~nl 186 (530)
+..|-..|. +++ +.++..|+.+|+.+..+... . ++..|...|.+++ +.++..|+..||-+
T Consensus 394 l~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 394 KKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 555666665 344 89999999999999986543 1 3567777776544 67888899999987
Q ss_pred hCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHH
Q 009623 187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACW 265 (530)
Q Consensus 187 ~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~ 265 (530)
..++. +.. ++..|..++ .+.+..+...++.+|..+..+..+ ..++..|+..+ .+.+..++..++.
T Consensus 465 ~~GS~--~ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 465 AMGSA--NIE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp STTCC--CHH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hcCCC--CHH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 64432 112 456677777 344445666888888876554321 23344444443 3557889999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhH
Q 009623 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (530)
Q Consensus 266 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 344 (530)
+|+.+..+.++. ++.++..|. +.++.++..++.+++--..+.... ..++.|+..+.++.+..+
T Consensus 531 gLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~V 594 (963)
T 4ady_A 531 GLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDV 594 (963)
T ss_dssp HHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHH
T ss_pred HHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHH
Confidence 999887666543 344555554 467888888888887555544332 235555555544437889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009623 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423 (530)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 423 (530)
|..|+.+|+.++.+.++ .++.++.. +++.++.+|..|.+||+.+..+.... .+++.|..+++
T Consensus 595 RraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~~ 657 (963)
T 4ady_A 595 RRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHcc
Confidence 99999999999877643 45666664 45679999999999999998754211 25777888899
Q ss_pred CCChHHHHHHHHHHHHHHhh
Q 009623 424 CPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 424 ~~~~~v~~~al~~l~~ll~~ 443 (530)
+.+..|+..|+.+|..+...
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999987643
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.77 E-value=9.5e-08 Score=87.29 Aligned_cols=186 Identities=15% Similarity=0.204 Sum_probs=143.5
Q ss_pred HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009623 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (530)
Q Consensus 204 ~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (530)
+.+.+.+ .+.+...+..++..|..++...+.........+++.|...+. +.+..++..++.+++.++..-........
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4477777 788999999999999999876322212234677889999995 88999999999999999854322222222
Q ss_pred HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHH
Q 009623 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NRE 361 (530)
Q Consensus 283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 361 (530)
..+++.++..+.+.+..++..|..++..++.... . ..+++.+...+.+. ++.+|..++..|+.+... .+.
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 2578999999999999999999999999987443 1 23678899999988 999999999999997653 333
Q ss_pred H-HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009623 362 Q-IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 362 ~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
. ....+ ..++|.|..++.+.+++||..|..+++.++..
T Consensus 168 ~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 168 ALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 12222 25899999999999999999999999999864
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.75 E-value=4.1e-08 Score=89.75 Aligned_cols=186 Identities=13% Similarity=0.149 Sum_probs=142.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh
Q 009623 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (530)
Q Consensus 162 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 241 (530)
+.+...+.+.++..|..++..|..++...+...... ...+++.|...+.++.+..++..++.++..|+..-...-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 457888889999999999999999986533221110 1134666667773378999999999999999965432223455
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC-chh-
Q 009623 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DMQ- 319 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~- 319 (530)
..++|.++..+.+.+..++..+..++..+..... .. .+++.+...+.+.++.++..++..|+.+.... +..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 7789999999999999999999999999876543 12 46788899999999999999999999976543 321
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009623 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
....+ ..+++.|..++.+. ++.+|..|..+++.++.
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 22222 36899999999988 99999999999999975
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.68 E-value=1.7e-06 Score=74.78 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=149.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009623 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 195 (530)
+.+..|..+|.+.+ +.++..|+.+|..+...-+.......-..+++.++.++.+.+..+.-.|+.+|..|..+.|-...
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 46888999998888 99999999999999985434444433346799999999999999999999999999988775444
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009623 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
.+.. .+..+..++ .+++.-+...+...+..+-- ......++..+..++.+.|..++..++.++.+++..+.
T Consensus 112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4333 577788888 68899999999999998821 12236678888999999999999999999999986543
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009623 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 276 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~ 315 (530)
+. .++ .+++.-+-.+|++.++.++..|+.++-.+.+.
T Consensus 183 D~--~i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DS--GHL-TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SC--CCG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CH--HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 21 011 25677788899999999999999999999875
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.5e-07 Score=83.53 Aligned_cols=194 Identities=10% Similarity=0.096 Sum_probs=141.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHh-hhCCCchhhhhHhh-cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-CCCh-
Q 009623 163 IFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF- 238 (530)
Q Consensus 163 ~L~~lL~~~~~~~~~~a~~~L~n-l~~~~~~~~~~i~~-~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~- 238 (530)
.+...+.+.++.-|..++..|.. ++.+.+........ ..++..|.+.+..+.+..++..++.++..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667788999999999999999 87554432210011 12455666677567788999999999999997644 3333
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009623 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 318 (530)
.....++|.++..+......++..+..++..++...+.......-..+++.|...|.+.++.++..++.+|+.++.....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 56677899999999988899988888888777653211000000013677888999999999999999999999875553
Q ss_pred ---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009623 319 ---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 319 ---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.....+...++|.|.+++.+. ++.+|..|..+++.++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 222223357899999999998 99999999999999875
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.54 E-value=6.2e-07 Score=81.83 Aligned_cols=192 Identities=11% Similarity=0.098 Sum_probs=140.8
Q ss_pred HHHHhhcCCCchhHHHHHHHHhhh-hccCCCCCC--hhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCCh-HHHH
Q 009623 205 PLLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPP--FDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ 279 (530)
Q Consensus 205 ~Ll~ll~~~~~~~~~~~a~~~L~~-L~~~~~~~~--~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~-~~~~ 279 (530)
.+...+ .+.+..-+..++..|.. ++.+.+... ......++..|.+.+ ...+..++..++.+++.++..-. ..+.
T Consensus 20 ~f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 345556 77888999999999999 886533222 222356788888889 67889999999999999985321 1111
Q ss_pred -HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009623 280 -AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (530)
Q Consensus 280 -~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (530)
.... .+++.++..+.+....++..+..++-.++...+.......-..+++.|...|.+. ++.+|..++.+|+.++..
T Consensus 99 ~~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 99 KDYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHH
Confidence 1222 4788999999999999999998888888864421110000113678899999998 999999999999999874
Q ss_pred CH---HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009623 359 NR---EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 359 ~~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.+ ......+...++|.|..++.+.+..||..|..+++.++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33 334344424799999999999999999999999998875
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.50 E-value=2.7e-08 Score=81.35 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=92.1
Q ss_pred hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009623 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 284 ~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
...++.+..+|.++++.++..|+++|+.+.. + .++.|..+|.++ ++.+|..|+|+|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--H---
Confidence 3567889999999999999999999987642 1 258899999988 99999999999999853 2
Q ss_pred HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009623 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 439 (530)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ 439 (530)
..++.|+..+.++++.||..|+++|.++.. + ..++.|..+++++++.++..+..+|..
T Consensus 73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 257889999999999999999999999853 2 247788888999999999999888754
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.50 E-value=1.9e-08 Score=82.22 Aligned_cols=121 Identities=21% Similarity=0.186 Sum_probs=92.6
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009623 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 321 (530)
...++.+..+|.++++.++..++++|+.+... .++.|+.+|.++++.++..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 45677888999999999999999988876421 24778899999999999999999999863
Q ss_pred HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009623 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
...++.|...+.++ ++.||..|+|+|+++.. + ..++.|+.++.++++.||..|+++|.++
T Consensus 72 ----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 13478889999888 99999999999999852 2 3578899999988999999999998753
No 82
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.48 E-value=6.1e-05 Score=82.59 Aligned_cols=340 Identities=11% Similarity=0.075 Sum_probs=188.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCC---h--hhHHHHHh
Q 009623 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT---S--EHTKVVID 157 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv-~ll~~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~~~~ 157 (530)
+.++++...++.++..+++- -+...+++.++++.++ .++. + +.++..|+.||..+.... + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 35677777888998888764 3466777889999999 8885 3 789999999999998732 2 11111110
Q ss_pred --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHhhhCCC-------chhhhhHhhcCChHHHHHhhcCCC
Q 009623 158 --HGAVPIF--------------VKLLYSPSDDVREQAVWALGNIAGDS-------PRCRDLVLSQGGLVPLLAQLNGQP 214 (530)
Q Consensus 158 --~g~i~~L--------------~~lL~~~~~~~~~~a~~~L~nl~~~~-------~~~~~~i~~~~~i~~Ll~ll~~~~ 214 (530)
.+.++.+ ...-...+.+..+..+.++..+.... +..+..+. .++..|+.+. ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 11112234555555666665443211 11121111 1223344433 556
Q ss_pred chhHHHHHHHHhhhhccCCC--CCChhhhh----chHHHHHHhhcCCC-------------------hh--HHHHHH-HH
Q 009623 215 KLSMLRNATWTLSNFCRGKP--QPPFDQVS----PALPALAHLIHSND-------------------DE--VLTDAC-WA 266 (530)
Q Consensus 215 ~~~~~~~a~~~L~~L~~~~~--~~~~~~~~----~~l~~L~~ll~~~d-------------------~~--v~~~a~-~~ 266 (530)
+.++...++.....|+..-- ........ .+++.++.-+.-++ .+ ...... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 78888888887777765321 11222223 33444444333221 00 111011 22
Q ss_pred HHHhccCC-hHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC-----
Q 009623 267 LSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----- 338 (530)
Q Consensus 267 l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----- 338 (530)
|.+++.-. ++..+ -+++.+...+.+ .+|..++.+++++|.++.+.......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 22222111 11111 123344444443 579999999999999998765443333334577788888763
Q ss_pred CCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH--------
Q 009623 339 NYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK-------- 407 (530)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~-------- 407 (530)
. ...++..++|++|.++.- .++... .++..|++.+..+++.++..|++++.+++..+......
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 2 455677899999998762 333222 35556777777777899999999999999854322210
Q ss_pred HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009623 408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 408 ~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~ 445 (530)
++ ..++..+......-+++-+..+.+++..++...+
T Consensus 586 ~~--~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 586 FI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred hH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 10 1123333333344455666677777777776543
No 83
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.47 E-value=6.3e-05 Score=73.13 Aligned_cols=321 Identities=11% Similarity=0.069 Sum_probs=194.1
Q ss_pred CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCC--CcHHHHHHcCCH-HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009623 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERS--PPIEEVIRSGVV-PRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (530)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~--~~~~~~~~~g~v-~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~ 149 (530)
.+..+++.|.. .+.++....+..+..++...+. .....+.+..-. ..+.......+++-....+..++..++....
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~ 157 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL 157 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCC
Confidence 66788888884 6678888888899999887310 122233333222 2233322234425555666666666654332
Q ss_pred h---hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHHHHHhhc------------
Q 009623 150 E---HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLN------------ 211 (530)
Q Consensus 150 ~---~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~Ll~ll~------------ 211 (530)
. ....+.... -++..|.. .+...+..++.+|..+..... +|..+.+.+ .+++++..+.
T Consensus 158 ~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 158 HNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp CCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred ccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 2 222222111 34455544 234556678888888877654 787776543 3566654432
Q ss_pred ----CCCchhHHHHHHHHhhhhccCCCCCChhhhhch--HHHHHHhhcC-CChhHHHHHHHHHHHhccCCh----HHHH-
Q 009623 212 ----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ- 279 (530)
Q Consensus 212 ----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~----~~~~- 279 (530)
.....+++..++.|++-|+...+.........+ ++.|+..++. ..+.+..-++.++.|+..... ....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 112467789999999999987532222222232 3556666664 468888889999999987652 2222
Q ss_pred HHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhH-------hh--------------cCCchhh-HHHh----------
Q 009623 280 AVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGN-------IV--------------TGDDMQT-QCVI---------- 324 (530)
Q Consensus 280 ~~~~~~~i~~L~~lL~~~---~~~~~~~a~~~L~n-------l~--------------~~~~~~~-~~~~---------- 324 (530)
.++..+++ .++..|... ++++....-..... ++ .-++... ..+.
T Consensus 314 ~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~ 392 (480)
T 1ho8_A 314 LLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD 392 (480)
T ss_dssp HHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred HHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence 23333444 455555543 33332221111111 11 0111111 1111
Q ss_pred hcCchHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHH
Q 009623 325 EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS 395 (530)
Q Consensus 325 ~~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 395 (530)
+..++..|.++|.+ +.++.+..-||.=|+.++.+.|..+..+-+.|+=..+++++.++|++||.+|+.|+.
T Consensus 393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 22478899999973 227888999999999999988888887778899999999999999999999999998
Q ss_pred Hhhc
Q 009623 396 NATS 399 (530)
Q Consensus 396 nl~~ 399 (530)
.+..
T Consensus 473 klm~ 476 (480)
T 1ho8_A 473 AIIG 476 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.38 E-value=0.00023 Score=78.55 Aligned_cols=344 Identities=10% Similarity=0.044 Sum_probs=195.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC------h
Q 009623 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------S 149 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~------~ 149 (530)
..++..+.+++..++...+.++..++...-...+ .++++.|++.+++++ +..+..++.+|..++... +
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 3556666666788999999999998875322223 457999999998877 788899999999998732 1
Q ss_pred hhHHHH---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHhhhC-CCchh-hhhHhhcCChHHHHH
Q 009623 150 EHTKVV---IDHGAVPIFVK-------LLYSPSD---------DVREQAVWALGNIAG-DSPRC-RDLVLSQGGLVPLLA 208 (530)
Q Consensus 150 ~~~~~~---~~~g~i~~L~~-------lL~~~~~---------~~~~~a~~~L~nl~~-~~~~~-~~~i~~~~~i~~Ll~ 208 (530)
+.+..+ +. ...+.+++ .+..+.. ++...++.++.++.. +.+.. .+.+ ...++.+.+
T Consensus 162 ~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~ 238 (960)
T 1wa5_C 162 ELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHK 238 (960)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHH
Confidence 222211 11 12333333 2443211 233346666666653 22321 1111 112334444
Q ss_pred hhcCC-----Cc---------hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-----CCChhHHHHHHHHHHH
Q 009623 209 QLNGQ-----PK---------LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-----SNDDEVLTDACWALSY 269 (530)
Q Consensus 209 ll~~~-----~~---------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-----~~d~~v~~~a~~~l~~ 269 (530)
++... .+ ..++..++.++..++...+..-......+++.+...+. ..++.+...++..+..
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 44211 11 24667778888877754321111223445555555554 3356778888888877
Q ss_pred hccCChHHHHHHHHhCcHH-----HHHHhhC-----------------------CCCchhHHHHHHHHhHhhcCCchhhH
Q 009623 270 LSDGTNDKIQAVIEAGVFP-----RLAEFLM-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 270 l~~~~~~~~~~~~~~~~i~-----~L~~lL~-----------------------~~~~~~~~~a~~~L~nl~~~~~~~~~ 321 (530)
++..... ...+.....++ .+++.+. +..+..|..|..+|..++...+..
T Consensus 319 ~~~~~~~-~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~-- 395 (960)
T 1wa5_C 319 VTRIPKY-FEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-- 395 (960)
T ss_dssp HHTSHHH-HGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH--
T ss_pred HhCcHhH-HHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh--
Confidence 7654221 11000001222 2222221 112356777788888777644321
Q ss_pred HHhhcCchHHHHHhhc------CCCchhHHHHHHHHHHHHhcCC---H---H------HHHHHHHhCcHHHHHHHHhcC-
Q 009623 322 CVIEYQALPCLLNLLS------GNYKKSIKKEACWTVSNITAGN---R---E------QIQAVIEANIIGPLVALLENA- 382 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~---~---~------~~~~l~~~~~i~~L~~ll~~~- 382 (530)
++ ..+++.+...+. +. +...|+.|..+++.++.+. . . ....++..-++ ..+.++
T Consensus 396 -v~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~----p~l~~~~ 468 (960)
T 1wa5_C 396 -VT-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIA----PDLTSNN 468 (960)
T ss_dssp -HH-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTH----HHHHCSS
T ss_pred -HH-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhH----HHhcCCC
Confidence 11 123444555554 34 6778899999999997531 1 0 22222222233 334555
Q ss_pred --chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009623 383 --EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 383 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~ 443 (530)
++.+|..|+|+++.++..-.++... .+++.++..|.++++.|+..|+.+|.+++..
T Consensus 469 ~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 469 IPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 7899999999999998865444333 3577888888888899999999999999874
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.36 E-value=3.9e-05 Score=82.25 Aligned_cols=301 Identities=12% Similarity=0.127 Sum_probs=208.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---h
Q 009623 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---S 149 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~---~ 149 (530)
..+..+++.+...+......|+..+..++....... .+..+++..|.+.+.+.. .. +.|+.++..++... +
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence 355666676776556666778888888776431111 011256778888887655 23 88999999999533 1
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009623 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 150 ~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
..-..++ +.++.++..+.+....++..|..++..++..-+...- ..+++.|+..+.....-.....++.++..|
T Consensus 88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAM 161 (986)
T ss_dssp TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 2222233 6789999999888889999888888877744332211 336888988885555788899999999999
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHH
Q 009623 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 306 (530)
+...+..-......++|.+...+-...+++...+..++..++. +.+ +. .++|.|++.+.+++. ...++
T Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d--~~-----~~~~~~~~~~~~p~~--~~~~~ 232 (986)
T 2iw3_A 162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD--IE-----RFIPSLIQCIADPTE--VPETV 232 (986)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT--TG-----GGHHHHHHHHHCTTH--HHHHH
T ss_pred HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc--hh-----hhHHHHHHHhcChhh--hHHHH
Confidence 9765433334457888999999988899999988888877763 222 22 678999999988753 55566
Q ss_pred HHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhcC-c
Q 009623 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLENA-E 383 (530)
Q Consensus 307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~-~ 383 (530)
..|+.-..-..-.... -+=.+|.|..-|... ...+++.++-++.|+|. .+|.....++. .++|.|-+..+.- +
T Consensus 233 ~~l~~~tfv~~v~~~~--l~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 233 HLLGATTFVAEVTPAT--LSIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIAD 308 (986)
T ss_dssp HHHTTCCCCSCCCHHH--HHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCS
T ss_pred HHhhcCeeEeeecchh--HHHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCC
Confidence 6666554322211111 112366777777766 88899999999999998 67776666654 5777777766554 8
Q ss_pred hhHHHHHHHHHHHhh
Q 009623 384 FDIKKEAAWAISNAT 398 (530)
Q Consensus 384 ~~v~~~a~~aL~nl~ 398 (530)
|++|..|..|+..|.
T Consensus 309 pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 309 PEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888874
No 86
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.35 E-value=0.00011 Score=81.25 Aligned_cols=331 Identities=10% Similarity=-0.005 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc---------------CCCCHHHHHHHHHHHHHHhcCCh-hh
Q 009623 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---------------REDYPQLQFEAAWALTNIASGTS-EH 151 (530)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~---------------~~~~~~i~~~a~~~L~~l~~~~~-~~ 151 (530)
.++..++.++..++.....+.. ....+++.+.. |. ..+.++++..|+.++..+..... ..
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~ 279 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN 279 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred hHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence 6778888888876652001211 23445666666 41 11237899999999999998432 11
Q ss_pred HHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHhhhCCCchh-h-----------hhHhhcCChHHHHHh
Q 009623 152 TKVVIDHGAVPIFVK-------LLYSPS---DDVREQAVWALGNIAGDSPRC-R-----------DLVLSQGGLVPLLAQ 209 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~-------lL~~~~---~~~~~~a~~~L~nl~~~~~~~-~-----------~~i~~~~~i~~Ll~l 209 (530)
....+. .+++.++. .+...+ .+.....+..+..++...+.. . ..+ ...++.++.+
T Consensus 280 ~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~ 356 (971)
T 2x1g_F 280 YPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHC 356 (971)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHH
Confidence 111111 12233332 223334 256666666666665332211 1 011 1234444444
Q ss_pred hcC----CCchhHHHHHHHHhhhhccCC--------CCCCh----hhhhchHHHHHHhhcCCCh---------------h
Q 009623 210 LNG----QPKLSMLRNATWTLSNFCRGK--------PQPPF----DQVSPALPALAHLIHSNDD---------------E 258 (530)
Q Consensus 210 l~~----~~~~~~~~~a~~~L~~L~~~~--------~~~~~----~~~~~~l~~L~~ll~~~d~---------------~ 258 (530)
... ..+..+...+++++..++... ..... .....+++.++..+..++. .
T Consensus 357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~ 436 (971)
T 2x1g_F 357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC 436 (971)
T ss_dssp HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence 422 347888999999998887521 11111 1223444555444432211 2
Q ss_pred HHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCC-----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHH
Q 009623 259 VLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L 332 (530)
.+..+..++..++.... .... -+++.+...+.+ .+|..++.++.+++.++.+...... ..++.+
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~-----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l 506 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILE-----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRL 506 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHH-----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHH
Confidence 33445555555554322 2222 122333333433 6889999999999999987654321 223333
Q ss_pred HHhh---c--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009623 333 LNLL---S--GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407 (530)
Q Consensus 333 ~~lL---~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 407 (530)
+.++ . +. ++.+|..++|+++.++..-......+ ..+++.|+..++ +.|+..|++++.+++.........
T Consensus 507 ~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p 580 (971)
T 2x1g_F 507 MRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKP 580 (971)
T ss_dssp HHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccc
Confidence 3332 2 23 78999999999999986211111111 135667777773 789999999999999765433322
Q ss_pred HHHHcCChHHHHhccCC--CChHHHHHHHHHHHHHHhh
Q 009623 408 FLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 408 ~l~~~~~l~~L~~lL~~--~~~~v~~~al~~l~~ll~~ 443 (530)
++ ..++..|..++.. -+.+.+..+++++..++..
T Consensus 581 ~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 581 YA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred cH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 22 2456677777766 3567888889999988864
No 87
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.23 E-value=0.0006 Score=75.92 Aligned_cols=343 Identities=10% Similarity=0.085 Sum_probs=182.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHH-hhcCCCCHHHHHHHHHHHHHHhcCC--hh---hHHHHHh-
Q 009623 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAWALTNIASGT--SE---HTKVVID- 157 (530)
Q Consensus 85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~-ll~~~~~~~i~~~a~~~L~~l~~~~--~~---~~~~~~~- 157 (530)
.++.++..++.++..+++. -+...+.+..+++.+.+ ++. + +.++..|+.||..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 4567888888888887654 22344556777777773 443 4 899999999999998742 21 1111111
Q ss_pred -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHhhhC-------CCchhhhhHhhcCChHHHHHhhcCCCc
Q 009623 158 -HGAVPIFVK-LL-------------YSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQPK 215 (530)
Q Consensus 158 -~g~i~~L~~-lL-------------~~~~~~~~~~a~~~L~nl~~-------~~~~~~~~i~~~~~i~~Ll~ll~~~~~ 215 (530)
.+++..+.. ++ ...+.+.....+..+..+.. ..+..+..+ ..+++.++... ..++
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 122222221 11 12233444444444433321 111122221 12455555555 4567
Q ss_pred hhHHHHHHHHhhhhcc----CCCCCC--hhhhhchHHHHHHhhcCC-------------------Ch---hHHHHHHHHH
Q 009623 216 LSMLRNATWTLSNFCR----GKPQPP--FDQVSPALPALAHLIHSN-------------------DD---EVLTDACWAL 267 (530)
Q Consensus 216 ~~~~~~a~~~L~~L~~----~~~~~~--~~~~~~~l~~L~~ll~~~-------------------d~---~v~~~a~~~l 267 (530)
.++...++..+..+++ ...... ......+++.++..+..+ |. .....+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 8888888888888876 321111 123344555555544321 00 1122233444
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhhC--CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----CCc
Q 009623 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----NYK 341 (530)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~ 341 (530)
..++.......-. -+.+.+-..+. ..+|..+..+++++|.++.+.........-..+++.+..+... ..+
T Consensus 438 ~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~ 513 (1049)
T 3m1i_C 438 VYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK 513 (1049)
T ss_dssp HHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH
T ss_pred HHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch
Confidence 4444222211111 12344444454 3578899999999999986544332111122345555554332 114
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH--------HHHHHcC
Q 009623 342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI--------KFLVIQG 413 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l~~~~ 413 (530)
+.++..++|+++.++.....+-..+ ..+++.++..+.++++.|+..|+++|.+++..+..... .++ ..
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~ 589 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QT 589 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HH
Confidence 5566679999998875211221222 23677788888888899999999999999985432211 111 12
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
++..+..++..-+.+-.....+++..++...
T Consensus 590 il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 3333444444445544556667777776543
No 88
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.22 E-value=7.5e-05 Score=82.35 Aligned_cols=258 Identities=10% Similarity=0.087 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHhhhCCCchhhhhHh---h-cC
Q 009623 132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRCRDLVL---S-QG 201 (530)
Q Consensus 132 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~~~~~a~~~L~nl~~~~~~~~~~i~---~-~~ 201 (530)
..+..|..+|..++...++ .++. .+++.+.+.+. +.++..++.|+.+++.++.....+..... . ..
T Consensus 376 s~R~aa~~~L~~l~~~~~~---~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEV---LVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHH---HHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcch---hHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 4677788888888874332 1211 12344444454 46788999999999999854211110000 0 01
Q ss_pred ChH----HHHHhhcCC--CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC-
Q 009623 202 GLV----PLLAQLNGQ--PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT- 274 (530)
Q Consensus 202 ~i~----~Ll~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~- 274 (530)
..+ .++..+... .++-++..++|+++.++..- .......+++.++..+.+++..|+..|+++|.+++...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 112 223333222 27889999999999999863 23467788899999998888999999999999988631
Q ss_pred ----------hHHHHHHHHhCcHHHHHHhhCCCC-----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh---
Q 009623 275 ----------NDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL--- 336 (530)
Q Consensus 275 ----------~~~~~~~~~~~~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL--- 336 (530)
.+.....+ ..+++.|+.++.... ......++.+++.++....+...... ..+++.|...+
T Consensus 529 ~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHH
Confidence 11122112 145666777776641 11234566666665432221111111 12333444333
Q ss_pred -cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009623 337 -SGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 337 -~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
+++.++.++..++.+++.++.. .++....+ ...++|.+..++.....++...+...+..+..
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 3343667777888899888875 44443333 34578888888887766777777777777764
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.17 E-value=0.00014 Score=80.27 Aligned_cols=340 Identities=14% Similarity=0.094 Sum_probs=188.7
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCC
Q 009623 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (530)
Q Consensus 126 ~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~ 202 (530)
.+.+ ...++.++++++.++.+-.+.. ...++.++..+ ..+++.++..++|+++.++..-....+ . -..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHH
Confidence 3344 6788999999999998643311 12334444433 335788999999999998743211111 1 2347
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCCh-HHHH
Q 009623 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ 279 (530)
Q Consensus 203 i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~-~~~~ 279 (530)
++.++..+ .+ +.++..|++++.++|...+..-......++..+..++... +...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77888877 33 7899999999999997543222233456666667777653 56788888888888875442 3333
Q ss_pred HHHHhCcHHHHHHhh----CCC-CchhHH---HHHHHHhHhhcCCch---------------------hhHHHhhcCchH
Q 009623 280 AVIEAGVFPRLAEFL----MHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCVIEYQALP 330 (530)
Q Consensus 280 ~~~~~~~i~~L~~lL----~~~-~~~~~~---~a~~~L~nl~~~~~~---------------------~~~~~~~~~~l~ 330 (530)
..++ .+++.+...+ ... ++..+. ..+.+|+.++..-.. ..-..+...+++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 3332 3444444333 222 333333 445555555432110 001112234556
Q ss_pred HHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH----hcC-chhHHHHHHHHHHHhhc--CCC
Q 009623 331 CLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL----ENA-EFDIKKEAAWAISNATS--GGT 402 (530)
Q Consensus 331 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~~-~~~v~~~a~~aL~nl~~--~~~ 402 (530)
.+..++... .++.+.+.+|.++..++....+.. ..++|.++..+ ... .+ ..++.+..++. +..
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~ 757 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE 757 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence 666665421 166889999999998764211111 12344444332 221 22 23344444433 221
Q ss_pred H---HHHHHHHHcCChHHHHhccC---CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009623 403 H---EQIKFLVIQGCIKPLCDLLV---CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 476 (530)
Q Consensus 403 ~---~~~~~l~~~~~l~~L~~lL~---~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 476 (530)
. ..+..+.+ .++..+..++. ..+++++......+..++......-.. ...... ..++.+.....
T Consensus 758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~----~~~~~~-----~i~~~~~~~l~ 827 (963)
T 2x19_B 758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC----ERLDVK-----AVFQCAVLALK 827 (963)
T ss_dssp TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC----TTSCHH-----HHHHHHHHHTT
T ss_pred cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC----CcccHH-----HHHHHHHHHcC
Confidence 1 12222111 12333333332 246899999999999999876643210 000011 12344455567
Q ss_pred CCCHHHHHHHHHHHHHhCCC
Q 009623 477 HDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 477 ~~~~~v~~~a~~il~~~~~~ 496 (530)
+++.++...+..++.+++..
T Consensus 828 ~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 828 FPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp CSCHHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 89999999999999987753
No 90
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.16 E-value=0.00024 Score=76.28 Aligned_cols=296 Identities=16% Similarity=0.160 Sum_probs=196.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC--CCChhhh
Q 009623 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQV 241 (530)
Q Consensus 164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~ 241 (530)
+.+.+...+..-+..++..++++.......+ ....+++..+.+.+ .+.... +.|+.++..||.... .......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGI-KDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHH-TSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHH-hccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 4444544333334556666776654332121 12235677777777 443333 999999999997652 2334455
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCchh
Q 009623 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~ 319 (530)
-+.+|.++..+.+.+..|+..|-.++..+... ++... ..+++.|+..|.+. .|..+..|+.++..++...+.+
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 67888888888888888888877777666543 33222 25678888888765 7999999999999999766544
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009623 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
...- -..++|.+...+.+. .++|++.|..++..+|. ++.+. ...+|.|++.+.+++ + --+++..|+.-
T Consensus 169 ~~~~-~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~-~-~~~~~~~l~~~ 238 (986)
T 2iw3_A 169 VALR-MPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPT-E-VPETVHLLGAT 238 (986)
T ss_dssp HHHH-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTT-H-HHHHHHHHTTC
T ss_pred HHHh-ccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChh-h-hHHHHHHhhcC
Confidence 3222 236899999999988 99999999999999987 44332 357999999998874 2 34445555544
Q ss_pred hcCC--CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-
Q 009623 398 TSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL- 474 (530)
Q Consensus 398 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l- 474 (530)
+.-. +...... .++.|.+-|....+.+...+.-++.|+++.-+.-.. ..+|...+ +..++..
T Consensus 239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~-----~~~f~~~l-----~p~~~~~~ 303 (986)
T 2iw3_A 239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV-----IAPFLGKL-----LPGLKSNF 303 (986)
T ss_dssp CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHTTT-----HHHHHHHT
T ss_pred eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH-----Hhhhhhhh-----hhHHHHHh
Confidence 3322 1111111 366677778888888999999999999987654221 22333333 4556653
Q ss_pred hcCCCHHHHHHHHHHHHHhC
Q 009623 475 QTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 475 ~~~~~~~v~~~a~~il~~~~ 494 (530)
....+|++++.|...++...
T Consensus 304 ~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 304 ATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp TTCCSHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHH
Confidence 56789998887777777664
No 91
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.15 E-value=7.4e-05 Score=68.98 Aligned_cols=189 Identities=12% Similarity=0.123 Sum_probs=142.6
Q ss_pred HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-
Q 009623 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI- 367 (530)
Q Consensus 289 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~- 367 (530)
.+++.|.+++...+..++.-|..+...+......++..+++..|+.+.... +...+..+..++.++..+ .....-++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs 199 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence 344556667788899999999997766788889999999999999999998 999999999999999875 34444444
Q ss_pred HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHH--------HcC--ChHHHHhccC---CCChHHHHHHH
Q 009623 368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV--------IQG--CIKPLCDLLV---CPDPRIVTVCL 434 (530)
Q Consensus 368 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~~--~l~~L~~lL~---~~~~~v~~~al 434 (530)
...+|..+..++.+.+..|.+.|+..|..++.... .....+. ..| -++.|+..|. +.|.+++..++
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 45678888999888889999999999999987542 1111111 112 3778899997 78999999999
Q ss_pred HHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHH
Q 009623 435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEK 485 (530)
Q Consensus 435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~ 485 (530)
..|..++...+.... -..+...+++.|.-..+...+... ++++.++
T Consensus 279 tLIN~lL~~apd~d~-----~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDS-----FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHH-----HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhH-----HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 999999887653221 223677788888777788866655 6666443
No 92
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.15 E-value=7.2e-05 Score=69.06 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=138.2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh
Q 009623 246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE 325 (530)
Q Consensus 246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~ 325 (530)
..++.-|.+.+.+.+..++..|..+...+.+....++..+++..|+......+...+..++.+++++..+.+.....+-.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 34556666788888899999999866566677888999999999999999999999999999999999754443323335
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------h--CcHHHHHHHHh---cCchhHHHHHHH
Q 009623 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--------A--NIIGPLVALLE---NAEFDIKKEAAW 392 (530)
Q Consensus 326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~~ 392 (530)
...+..+..++.+. ...|.+.|..+|-.++..++.....+.+ . ..+..|+.+|. +.|.+++..|..
T Consensus 201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 67889999999976 8999999999999998765433333322 1 23778999997 678999999998
Q ss_pred HHHHhhcCCC-HH----HHHHHHHcCChHHHHhccCCC--ChHHHHH
Q 009623 393 AISNATSGGT-HE----QIKFLVIQGCIKPLCDLLVCP--DPRIVTV 432 (530)
Q Consensus 393 aL~nl~~~~~-~~----~~~~l~~~~~l~~L~~lL~~~--~~~v~~~ 432 (530)
.|..+..+++ .+ ....+-+.|+=..+...++.. +++++..
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 8887776554 23 333444556556667767654 6565553
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.13 E-value=0.00015 Score=80.18 Aligned_cols=251 Identities=10% Similarity=0.104 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHH
Q 009623 133 LQFEAAWALTNIASGTS-EHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL 206 (530)
Q Consensus 133 i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L 206 (530)
.|..+..+|..++.... .....+ ++.+-..+.+ .++..++.++++++.++........ ..++.+
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l 506 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRL 506 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHH
Confidence 45566667766665333 222222 2233333332 5788999999999999866543211 233334
Q ss_pred HHhh---cC-CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009623 207 LAQL---NG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (530)
Q Consensus 207 l~ll---~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (530)
+.++ .. +.++.++..++|+++.++..-.. .......+++.++..+ + +.++..|++++.+++..........+
T Consensus 507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~ 582 (971)
T 2x1g_F 507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA 582 (971)
T ss_dssp HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH
Confidence 4332 11 34788999999999999875321 1245677888888888 2 78999999999999976554444333
Q ss_pred HhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCc-hhhHHHhh---cCchHHHHHhhcCCC-chhHHHHHHHHHHHH
Q 009623 283 EAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDD-MQTQCVIE---YQALPCLLNLLSGNY-KKSIKKEACWTVSNI 355 (530)
Q Consensus 283 ~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~-~~~~~~~~---~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl 355 (530)
. .++..+..++..+ +...+..++.+++.++...+ ......+. ..++..+..++.... ++..+.....++..+
T Consensus 583 ~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L 661 (971)
T 2x1g_F 583 D-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMI 661 (971)
T ss_dssp H-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 3 5777777888773 46788888999999876432 22222221 122333333333321 222334444444444
Q ss_pred hc-----CC-----------HHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhc
Q 009623 356 TA-----GN-----------REQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399 (530)
Q Consensus 356 ~~-----~~-----------~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~ 399 (530)
+. +. ++....+ -..+++.+..++... +..+.+.+++++..++.
T Consensus 662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 662 STLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 32 11 1111112 246788888887643 67999999999999765
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.10 E-value=1.8e-05 Score=86.58 Aligned_cols=303 Identities=11% Similarity=0.030 Sum_probs=168.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCCh
Q 009623 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAV 161 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i 161 (530)
+.++.+...++.++..+++- -+...++..++++.+..++.. ++++..|+.||..+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 46788889999999999864 456667778889999998864 789999999999998854 3333333322011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHhhhC------CCc-----hhhhh--HhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009623 162 PIFVKLLY--SPSDDVREQAVWALGNIAG------DSP-----RCRDL--VLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (530)
Q Consensus 162 ~~L~~lL~--~~~~~~~~~a~~~L~nl~~------~~~-----~~~~~--i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L 226 (530)
...+..+. ..+.++.+..+..+..++. ..+ +.+.. -.-.+.++.++.+. .+++.++...++.++
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11222222 3566666555544433321 111 00000 01124677777887 566667777776666
Q ss_pred hhhccCC---CC--CCh----hhhhchHHHHHHhhcCC-----Ch-----------hHHHHHHHHHHH-hccCChHHHHH
Q 009623 227 SNFCRGK---PQ--PPF----DQVSPALPALAHLIHSN-----DD-----------EVLTDACWALSY-LSDGTNDKIQA 280 (530)
Q Consensus 227 ~~L~~~~---~~--~~~----~~~~~~l~~L~~ll~~~-----d~-----------~v~~~a~~~l~~-l~~~~~~~~~~ 280 (530)
..+.... +. ... .....+++.++.-+.-+ +. +.+.... .+.. ++.-.++..-.
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence 6655321 11 111 22233444444444321 11 2333333 2222 21112111111
Q ss_pred -HHHhCcHHHHHHhhC---CCCchhHHHHHHHHhHhhcCCchhhHHH-----hhcCchHHHHHhhc-----CCCchhHHH
Q 009623 281 -VIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVTGDDMQTQCV-----IEYQALPCLLNLLS-----GNYKKSIKK 346 (530)
Q Consensus 281 -~~~~~~i~~L~~lL~---~~~~~~~~~a~~~L~nl~~~~~~~~~~~-----~~~~~l~~L~~lL~-----~~~~~~v~~ 346 (530)
+.+ -+.+.+...+. +.+|..++.++.+++.++.+.......+ .-..+++.+..++. .+ ++.|+.
T Consensus 436 ~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~ 513 (980)
T 3ibv_A 436 YMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL 513 (980)
T ss_dssp HHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred HHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence 110 11122223342 3468899999999999998755322111 00124455555554 45 899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc------CchhHHHHHHHHHHHhhcCCC
Q 009623 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLEN------AEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~nl~~~~~ 402 (530)
.++|+++..+..-.. +...++.++..+-+ ++.+|+..|+.++.+++..+.
T Consensus 514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 999999999873221 12355555555444 567899999999999998654
No 95
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.08 E-value=0.0005 Score=75.93 Aligned_cols=331 Identities=11% Similarity=0.054 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh--hhHHH---HHh--CCC
Q 009623 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--EHTKV---VID--HGA 160 (530)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~--~~~~~---~~~--~g~ 160 (530)
.+...++.++..++..+ .... ....+++.+++++. + ++++..|+.++..+..... ..... ++. .+.
T Consensus 217 ~~~~~~l~~l~~wi~~~-~~~~---~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~ 289 (963)
T 2x19_B 217 CVRQKVLKCFSSWVQLE-VPLQ---DCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGL 289 (963)
T ss_dssp HHHHHHHHHHHHHHTSS-CCGG---GTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC-CCcc---cchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhh
Confidence 46667777776665432 2111 11345777777774 3 6789999999999988432 11111 111 111
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh-------hhhHhhcCChHHHHHhhcC----CCchhHHHHHHHHhhhh
Q 009623 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-------RDLVLSQGGLVPLLAQLNG----QPKLSMLRNATWTLSNF 229 (530)
Q Consensus 161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~-------~~~i~~~~~i~~Ll~ll~~----~~~~~~~~~a~~~L~~L 229 (530)
.+.+...+...+.......+.++..++...+.. ...+ ...+..++.+... ..+..+...++..+..+
T Consensus 290 ~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l 367 (963)
T 2x19_B 290 QEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTL 367 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHH
Confidence 222222233344555555556666654321110 0111 1234444444422 23455566666666666
Q ss_pred ccCCCCC-------Ch----hhhhchHHHHHHhhcCCChh---------------HHHHHHHHHHHhccCCh-HHHHHHH
Q 009623 230 CRGKPQP-------PF----DQVSPALPALAHLIHSNDDE---------------VLTDACWALSYLSDGTN-DKIQAVI 282 (530)
Q Consensus 230 ~~~~~~~-------~~----~~~~~~l~~L~~ll~~~d~~---------------v~~~a~~~l~~l~~~~~-~~~~~~~ 282 (530)
+...... .. .....+++.++..+..++.+ .+..+..++..++.... ....
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~--- 444 (963)
T 2x19_B 368 QDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLS--- 444 (963)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH---
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHH---
Confidence 5521110 01 12233444444444322211 12223333333331111 1111
Q ss_pred HhCcHHHHHHhh----CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh---cCCCchhHHHHHHHHHHHH
Q 009623 283 EAGVFPRLAEFL----MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 283 ~~~~i~~L~~lL----~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl 355 (530)
-+++.+...+ .+.+|..+..++++++.++.+..... ...++.++..+ ..+ ++.+|..++|+++.+
T Consensus 445 --~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~ 516 (963)
T 2x19_B 445 --NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGAL 516 (963)
T ss_dssp --HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHH
Confidence 2233444445 56788999999999999998755321 12334444443 334 778999999999999
Q ss_pred hcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC--CChHHHHHH
Q 009623 356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVC 433 (530)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~v~~~a 433 (530)
+..-..... .+ ..+++.++..+.+ +.|+..|+++|.+++.........++ ..++..|..++.. -+.+.+..+
T Consensus 517 ~~~l~~~~~-~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~ 590 (963)
T 2x19_B 517 SEWLADHPV-MI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWL 590 (963)
T ss_dssp HHHHHHCHH-HH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHhCHH-HH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHH
Confidence 763222211 22 3688888888854 79999999999999864322111111 1234455555554 256788888
Q ss_pred HHHHHHHHhhh
Q 009623 434 LEGLENILKVG 444 (530)
Q Consensus 434 l~~l~~ll~~~ 444 (530)
++++..++...
T Consensus 591 ~eai~~i~~~~ 601 (963)
T 2x19_B 591 MQALGFLLSAL 601 (963)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhcC
Confidence 99999988644
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.85 E-value=0.022 Score=63.36 Aligned_cols=316 Identities=10% Similarity=0.119 Sum_probs=170.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCC--ch-
Q 009623 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDS--PR- 192 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~--~~- 192 (530)
+++.+..++....++.++..++.++.+....-+ ...+.....++.++. ++ .++.++..|+.+|..+.... +.
T Consensus 195 i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~ 270 (1049)
T 3m1i_C 195 IFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDN 270 (1049)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcch
Confidence 344455556544447899999999998876333 223555667777763 44 37889999999999998552 21
Q ss_pred --hhhhHhh--cCChHHHHH-h----------h--cCCCchhHHHHHHHHhhhhccCC------CCCChhhhhchHHHHH
Q 009623 193 --CRDLVLS--QGGLVPLLA-Q----------L--NGQPKLSMLRNATWTLSNFCRGK------PQPPFDQVSPALPALA 249 (530)
Q Consensus 193 --~~~~i~~--~~~i~~Ll~-l----------l--~~~~~~~~~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~ 249 (530)
....+.. .+.+..+.. + . ..+.+.+.....+..+..+.... +.........+++.++
T Consensus 271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll 350 (1049)
T 3m1i_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence 1111110 111221111 1 1 02234555555555554433211 1111222345677777
Q ss_pred HhhcCCChhHHHHHHHHHHHhcc----C--ChHHHHHHHHhCcHHHHHHhhCCCCc----------------------hh
Q 009623 250 HLIHSNDDEVLTDACWALSYLSD----G--TNDKIQAVIEAGVFPRLAEFLMHPSP----------------------SV 301 (530)
Q Consensus 250 ~ll~~~d~~v~~~a~~~l~~l~~----~--~~~~~~~~~~~~~i~~L~~lL~~~~~----------------------~~ 301 (530)
.+...++.++...++.....++. . .......++. .+++.++..+..++. ..
T Consensus 351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~ 429 (1049)
T 3m1i_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1049)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence 77777787887777766655554 1 1111121222 344555555432110 12
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009623 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
+..+..+|..++...+...- .-+.+.+...+.. ..+...+..++|+++.++.+.......-.-..+++.|..+..
T Consensus 430 ~~~~~~~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~ 505 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV 505 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence 32344455555432221111 1123444455543 226788999999999998743222111111124455554432
Q ss_pred -----cCchhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009623 381 -----NAEFDIKKEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 381 -----~~~~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~ 446 (530)
.+.+.++..++|+++.++.. ..+++.. .+++.|+..+.++++.++..|+.++.+++.....
T Consensus 506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 13455666799999977642 1233322 3577788888888899999999999999986543
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.76 E-value=0.0034 Score=68.85 Aligned_cols=390 Identities=8% Similarity=0.054 Sum_probs=202.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009623 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----DYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (530)
Q Consensus 85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~ 160 (530)
.++..+..++++++.++.+. .+....-.-..+++.|+.++... ....++..++|+++.++.--......+ ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~v 541 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTV 541 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHH
Confidence 57889999999999887542 22212222234677888887631 113455567799988766221111111 134
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh------cCChHHHHHhhc---CCCchhHHHHHHHHhhhhcc
Q 009623 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~------~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..|+..+..+++.++..|+++|.+||.+ ++..+.. ...++.++..+. ..-+..-...+..+++.+..
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66777777777889999999999999965 3333321 113344433331 33456666788888888888
Q ss_pred CCCCCC--hhhhhchHHHHH----Hhhc--CC------C---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009623 232 GKPQPP--FDQVSPALPALA----HLIH--SN------D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (530)
Q Consensus 232 ~~~~~~--~~~~~~~l~~L~----~ll~--~~------d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL 294 (530)
..+... ......+++.+. .+.. +. | .......+.++..++..-......... .+.+.++.+.
T Consensus 619 ~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~y 697 (1023)
T 4hat_C 619 EERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYNMLQLY 697 (1023)
T ss_dssp TCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHHH
Confidence 754322 112222222222 2221 01 1 122333444444443221110000000 1122222221
Q ss_pred CC------------C-----Cc------hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----C----Cchh
Q 009623 295 MH------------P-----SP------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----N----YKKS 343 (530)
Q Consensus 295 ~~------------~-----~~------~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~----~~~~ 343 (530)
+. + .+ .++..+++.+.......+.. ..+...+++.|+..+-. . .++.
T Consensus 698 ~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~--~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~ 775 (1023)
T 4hat_C 698 RAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL--DDVVKVLVEPLLNAVLEDYMNNVPDARDAE 775 (1023)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH--HHHHHHTHHHHHHHHHHHHHHSCGGGCCHH
T ss_pred HHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHhHHHHHHHHHHHHHhCChhhccHH
Confidence 10 0 01 12223333333333222111 11223345555444321 1 1344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC---chhHHHHHHHHHHHhhcCCC-------HHHHHHHHHcC
Q 009623 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA---EFDIKKEAAWAISNATSGGT-------HEQIKFLVIQG 413 (530)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~~-------~~~~~~l~~~~ 413 (530)
+-.-..-++..+.....+.+..+++ .++..-+.++..+ .|+.|..-...+..+..++- ++..+.
T Consensus 776 vL~l~s~iv~~~~~~~~~~~~~il~-~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~----- 849 (1023)
T 4hat_C 776 VLNCMTTVVEKVGHMIPQGVILILQ-SVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL----- 849 (1023)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHHHHH-HHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH-----
Confidence 5444445555554433444444444 3555666677653 58888888888877766542 222222
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHH----HHhcCCCHHHHHHHHHH
Q 009623 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE----SLQTHDNAEIYEKSVKL 489 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~l~~~~~~~v~~~a~~i 489 (530)
+++.++-.++.++.++...++..+..++....... ...+...|-..-+.+.+. .+.+....-..+.-..+
T Consensus 850 ~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~------~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~ 923 (1023)
T 4hat_C 850 FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG------NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALL 923 (1023)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC------SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHH
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHH
Confidence 45556667788999999999999999987665321 112344444444454443 44667777777777788
Q ss_pred HHHhCC
Q 009623 490 LETYWL 495 (530)
Q Consensus 490 l~~~~~ 495 (530)
+...|.
T Consensus 924 l~~l~~ 929 (1023)
T 4hat_C 924 LMKLIS 929 (1023)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877665
No 98
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.70 E-value=0.0099 Score=65.12 Aligned_cols=301 Identities=12% Similarity=0.100 Sum_probs=161.9
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHh--CC
Q 009623 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF-VEFLLREDYPQLQFEAAWALTNIASGT-SEHTKVVID--HG 159 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~L-v~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~--~g 159 (530)
+.++++...++.+++.+++- -++..+++.++++.+ ..+|. + +.++..|+.||..+.... ++....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45677777888999988765 346677888888888 46663 4 789999999999998743 222222211 12
Q ss_pred ChHHHHHhhC-------------CCCHHHHHHHHHHHHhhhCC-------CchhhhhHhhcCChHHHHHhhcCCCchhHH
Q 009623 160 AVPIFVKLLY-------------SPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219 (530)
Q Consensus 160 ~i~~L~~lL~-------------~~~~~~~~~a~~~L~nl~~~-------~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~ 219 (530)
++..+..++. ..+.+.....+.++..+... .|..+..+.. ++..++.+. ..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence 2222222221 12234444444555444321 1111111111 233344433 56788888
Q ss_pred HHHHHHhhhhccC----CC-----CC------------ChhhhhchHHHHHH----hhcCCC------------------
Q 009623 220 RNATWTLSNFCRG----KP-----QP------------PFDQVSPALPALAH----LIHSND------------------ 256 (530)
Q Consensus 220 ~~a~~~L~~L~~~----~~-----~~------------~~~~~~~~l~~L~~----ll~~~d------------------ 256 (530)
+.+......|... .+ .+ ......+++..|.. -+..++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 8887776666432 11 00 01112333333333 222111
Q ss_pred --h-----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcC
Q 009623 257 --D-----EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327 (530)
Q Consensus 257 --~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~ 327 (530)
. +...+++..+.++. .++.... .++.+.+.+.. .+|.....++|++|.++..-......-.-..
T Consensus 449 d~~~~~ly~~mrd~L~~lt~l~--~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~ 521 (1073)
T 3gjx_A 449 DTDSINLYKNMRETLVYLTHLD--YVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT 521 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC--HHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHhcCC--HHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence 0 12222333333222 1222221 23444444443 3688999999999999854332222122234
Q ss_pred chHHHHHhhcCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009623 328 ALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 328 ~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 402 (530)
+++.|+.+..+.. ...++...+|++|..+.--..+...+ ..++..|++.+...++.|+..|+.|+..++..+.
T Consensus 522 vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 522 VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 6667776665431 23456667899999876322222222 1356677888888889999999999999987553
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.67 E-value=0.00034 Score=68.49 Aligned_cols=258 Identities=12% Similarity=0.059 Sum_probs=155.8
Q ss_pred hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009623 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
.++....++..|-++.+++|.-|+-.||.++...+.. .|.. ...+ . ..|+++++-++-+.
T Consensus 172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLALDR-- 231 (800)
T 3oc3_A 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILVTDK-- 231 (800)
T ss_dssp GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBC--
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHHhcc--
Confidence 3446688888999999999999999999998764210 1111 1122 1 44555555544421
Q ss_pred hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009623 151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
+-.+.++ .-..+|+.|+.+|+.+ ..-+.- ..++..++..+ ....-+++..++-.|.++
T Consensus 232 -------------FGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL 290 (800)
T 3oc3_A 232 -------------FNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL 290 (800)
T ss_dssp -------------CBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT
T ss_pred -------------ccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH
Confidence 1111222 1235788888888887 554432 23445555444 555677888888888877
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC--chhHHHHHH
Q 009623 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALR 307 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~~~~~a~~ 307 (530)
..--. ...++++.++..|.+.|++|+.-|+.+|..++ . ++... .++..+...|.+-+ ..-....+.
T Consensus 291 ~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMd 358 (800)
T 3oc3_A 291 KEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLS 358 (800)
T ss_dssp GGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHH
Confidence 11101 15777888888888888889888888888887 2 22233 23344444444321 223344455
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009623 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
.|+.++...... -.....+|.|.+.+.+. -..||..+..++..+. .....+.+. -.++-..+.+++
T Consensus 359 LLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLIF--------QNILLE~neeIl 424 (800)
T 3oc3_A 359 LLTKIYRENPEL---SIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLVA--------EVVLIEEKDEIR 424 (800)
T ss_dssp HHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHHH--------HHHHHCSCHHHH
T ss_pred HHHHHHcCCccc---ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHHH--------HHHHhCCcHHHH
Confidence 666666544321 11237889999999998 8999999999887776 222222222 234555677788
Q ss_pred HHHHHHHH
Q 009623 388 KEAAWAIS 395 (530)
Q Consensus 388 ~~a~~aL~ 395 (530)
..+..+..
T Consensus 425 ~lS~~VWk 432 (800)
T 3oc3_A 425 EMAIKLLK 432 (800)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776664
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0019 Score=59.85 Aligned_cols=193 Identities=11% Similarity=0.079 Sum_probs=126.3
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHH-HHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009623 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIE-EVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~-~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~ 148 (530)
+..+| +-+.|.|.++..|..|+..+.+++......... ... -....+.+-..+.+.+ ..++..++.++..++...
T Consensus 9 ~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 9 YTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp --CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC
T ss_pred hhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHh
Confidence 34555 668899999999999999999988653211111 111 1234566677887777 899999999999887632
Q ss_pred h-----hhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009623 149 S-----EHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (530)
Q Consensus 149 ~-----~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a 222 (530)
. .......-..+++.|+. .+.+....++..+..++..++...... .. ++..++..+ .+.++.++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~ 159 (278)
T 4ffb_C 87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAA 159 (278)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHH
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHH
Confidence 1 11111112345677775 477788889999988887776332211 11 244555666 77888998888
Q ss_pred HHHhhhhccCCC--CCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009623 223 TWTLSNFCRGKP--QPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 223 ~~~L~~L~~~~~--~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
+..|..+..... ... ......+++.+..++.+.|+.|+..+..++..+-..
T Consensus 160 l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 160 ANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 888887765421 111 223455677788889999999999999998777543
No 101
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.49 E-value=0.0032 Score=68.92 Aligned_cols=307 Identities=10% Similarity=-0.010 Sum_probs=166.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch--hhhhHhhcCChHH
Q 009623 128 EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CRDLVLSQGGLVP 205 (530)
Q Consensus 128 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~--~~~~i~~~~~i~~ 205 (530)
.+ +.+...++.+|......- ....+++.+.++.+.++|.. ++++..|+.+|..+...... .+..++..=.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 55 889999999999998832 23456666788888888864 78999999999999854432 2222222101122
Q ss_pred HHHhhcC-CCchhHHHHHHHHhhhhc------cCCCC-CC-------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 009623 206 LLAQLNG-QPKLSMLRNATWTLSNFC------RGKPQ-PP-------FDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (530)
Q Consensus 206 Ll~ll~~-~~~~~~~~~a~~~L~~L~------~~~~~-~~-------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 270 (530)
.+..+.. ..|.+..+..+..+..++ ...+. .. .....++++.++.++.+++.++...++..+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 2222212 456666554444443221 11121 11 134467889999999888888877665554443
Q ss_pred ccC-----C----hHHHHHHHHhCcHHHHHHhhCCCC---c-------------hhHHHHHHHHhHhhcCCchhhHHHhh
Q 009623 271 SDG-----T----NDKIQAVIEAGVFPRLAEFLMHPS---P-------------SVLIPALRTVGNIVTGDDMQTQCVIE 325 (530)
Q Consensus 271 ~~~-----~----~~~~~~~~~~~~i~~L~~lL~~~~---~-------------~~~~~a~~~L~nl~~~~~~~~~~~~~ 325 (530)
... . ......++. .+++.++..+..++ + ..|....-.+..++.-.+......+-
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 311 0 111121221 34444554444321 0 12333221122222111111111000
Q ss_pred cCchHHHHHhhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-H----hCcHHHHHHHHh-----cCchhHHHHHHH
Q 009623 326 YQALPCLLNLLS---GNYKKSIKKEACWTVSNITAGNREQIQAVI-E----ANIIGPLVALLE-----NAEFDIKKEAAW 392 (530)
Q Consensus 326 ~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~----~~~i~~L~~ll~-----~~~~~v~~~a~~ 392 (530)
.-+.+.+...+. +. +...++.+..+++.++.+......... . ..+++.|..++. .+++.|+..+++
T Consensus 439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~ 517 (980)
T 3ibv_A 439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME 517 (980)
T ss_dssp HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 012222333332 22 567788999999999875332111100 0 014455666655 567999999999
Q ss_pred HHHHhhcCC--CHHHHHHHHHcCChHHHHh--ccCCCChHHHHHHHHHHHHHHhhhhh
Q 009623 393 AISNATSGG--THEQIKFLVIQGCIKPLCD--LLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 393 aL~nl~~~~--~~~~~~~l~~~~~l~~L~~--lL~~~~~~v~~~al~~l~~ll~~~~~ 446 (530)
+++..+..- .++... .++..+++ .+.++++.++..|..++.++++....
T Consensus 518 ~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 518 ILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 999987632 122222 23555555 55567888999999999999987654
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0042 Score=57.45 Aligned_cols=189 Identities=11% Similarity=0.122 Sum_probs=125.9
Q ss_pred HHHhhCCCCchhHHHHHHHHhHhhcCCchhh--HHHh--hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-H----
Q 009623 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQT--QCVI--EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-R---- 360 (530)
Q Consensus 290 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~---- 360 (530)
+-+-|.+.+|..|..|+..+..+....+... .... -....+.+...+.+. +..+...++.++..++... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5677899999999999999988876443221 1111 123566677788777 8999999999999887521 1
Q ss_pred HHHHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009623 361 EQIQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 439 (530)
Q Consensus 361 ~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ 439 (530)
.......-..+++.|++- +.+....++..|..++..++....+.. .+++.+...+++.+|+++..++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 111111223467777764 666778899999988888775432110 135677888999999999999999999
Q ss_pred HHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009623 440 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 440 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
++....... .+ ....+ ...+..+..+..+.|++|++.|..++-.+|-
T Consensus 166 ~l~~fg~~~------~~-~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 166 LMAAFGLTN------VN-VQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHTTTT------CC-HHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCc------CC-chhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 886532110 00 11111 1224566778899999999999999877654
No 103
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.34 E-value=0.02 Score=52.56 Aligned_cols=293 Identities=17% Similarity=0.192 Sum_probs=176.5
Q ss_pred HHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHH
Q 009623 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLT 261 (530)
Q Consensus 183 L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~ 261 (530)
|.++..+.+...+-++..+++..+...+ +.++.++.++.+..|...+... ..........+|.++..+. +++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 3444455555566677788888888888 7888999999999999888764 2223334677888888776 67899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-------Cch-------hHHHHHHHHhHhhc-------------
Q 009623 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-------SPS-------VLIPALRTVGNIVT------------- 314 (530)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~-------~~~~a~~~L~nl~~------------- 314 (530)
.....|+|...+........+..+.+..|...+... +.. +...+++++.|...
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 999999999988887778888889999998876542 222 34445555555531
Q ss_pred CCc--hhhHHHhhcCchHHHHHhhcCCC-c----hhHHHHHHHHHHHHhcCC---HHHH----HHHHHhCcHHHHHHHHh
Q 009623 315 GDD--MQTQCVIEYQALPCLLNLLSGNY-K----KSIKKEACWTVSNITAGN---REQI----QAVIEANIIGPLVALLE 380 (530)
Q Consensus 315 ~~~--~~~~~~~~~~~l~~L~~lL~~~~-~----~~v~~~a~~~L~nl~~~~---~~~~----~~l~~~~~i~~L~~ll~ 380 (530)
|.. .+...+++..+++.|+.+|+-+. + -++|.......--+.... .+.. +.+-..+++-.++-.+.
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s 503 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS 503 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence 111 22334566788899999987642 1 244554444433333311 0100 01112233333333221
Q ss_pred c-----Cc-------hhHHHHHHHHHHHhhcCC-CHHHH-HHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHhhh
Q 009623 381 N-----AE-------FDIKKEAAWAISNATSGG-THEQI-KFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 381 ~-----~~-------~~v~~~a~~aL~nl~~~~-~~~~~-~~l~~~~~l~~L~~lL~~~--~~~v~~~al~~l~~ll~~~ 444 (530)
. .+ ..+.+.+...|..+...+ ..++. .++ ..++.=.++|+++ .|.....++..-.++++++
T Consensus 504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~---YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHc 580 (619)
T 3c2g_A 504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYS---YSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHC 580 (619)
T ss_dssp HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT---TTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhe---eeccCchhhhcccccChHHHHHHHHHHHHHHHhC
Confidence 0 11 123344445555554432 32221 111 1133334566544 5677778888888888877
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009623 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
+.... .-. -.-..++-+.+|.|+++...|..++.+|
T Consensus 581 P~~Ad-----------~W~--i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 581 PTRAD-----------IWT--IDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp TTHHH-----------HSC--CCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred cchhc-----------cce--echHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 65321 100 0124567789999999999999999876
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.32 E-value=0.0038 Score=56.38 Aligned_cols=181 Identities=14% Similarity=0.091 Sum_probs=117.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----CchhhHH
Q 009623 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQTQC 322 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~----~~~~~~~ 322 (530)
.+...+.+.|..-...++..|.......++.....++ .+++.+.-.+.+.+..+...++.+|..+... .......
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3455555666666666666665544333322211111 1233333234467888888888888776431 1111111
Q ss_pred HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009623 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
. -.-++|.|+.-+-++ ...+|..+-.++..++. ..+. .+++.+++-+.+.++++|.+++..+..+....
T Consensus 129 e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 129 E-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp H-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 0 124689999999888 88899888887776654 2222 36677888888899999999999999987622
Q ss_pred CHHHHHHHHHcCCh---HHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 402 THEQIKFLVIQGCI---KPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 402 ~~~~~~~l~~~~~l---~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
... ....+ +.+..++.+.|..|+..|+.++..+....
T Consensus 199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 111 23468 99999999999999999999998877543
No 105
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.31 E-value=0.055 Score=59.31 Aligned_cols=310 Identities=12% Similarity=0.142 Sum_probs=165.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHhhhCCC-chhhh
Q 009623 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGDS-PRCRD 195 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~ 195 (530)
++.+..++....++.+...++.+|+.+.+-- ....+++.+.++.+ ..+| .+++++..|+.+|..+.+.. +.+.+
T Consensus 208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~ 283 (1073)
T 3gjx_A 208 FQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEE 283 (1073)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHH
Confidence 3334444544444888888999999988743 34567788888888 4666 46789999999999988542 22222
Q ss_pred hHhh--cCChHHHHHhh------------cCCCchhHHHHHHHHhhhhccCCC-----CCC-hhhhhchHHHHHHhhcCC
Q 009623 196 LVLS--QGGLVPLLAQL------------NGQPKLSMLRNATWTLSNFCRGKP-----QPP-FDQVSPALPALAHLIHSN 255 (530)
Q Consensus 196 ~i~~--~~~i~~Ll~ll------------~~~~~~~~~~~a~~~L~~L~~~~~-----~~~-~~~~~~~l~~L~~ll~~~ 255 (530)
.+.. ...+..+-.++ ....+.+.....+.++..+....- .+. ......++..++.+...+
T Consensus 284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~ 363 (1073)
T 3gjx_A 284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE 363 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC
Confidence 2211 01111111111 123355667777777766554321 001 112223344455555667
Q ss_pred ChhHHHHHHHHH----HHhccCC------------------hHHHHHHHH---hCcHHHHHHhhCCCCc-----------
Q 009623 256 DDEVLTDACWAL----SYLSDGT------------------NDKIQAVIE---AGVFPRLAEFLMHPSP----------- 299 (530)
Q Consensus 256 d~~v~~~a~~~l----~~l~~~~------------------~~~~~~~~~---~~~i~~L~~lL~~~~~----------- 299 (530)
|.++...++..= ..+.... ... ..+.. ..+...++..+..+++
T Consensus 364 d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~ 442 (1073)
T 3gjx_A 364 ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEV 442 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCccccccCcccchH
Confidence 777765543321 2222110 011 11111 1222333333333211
Q ss_pred --------------hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcC-CHH-H
Q 009623 300 --------------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAG-NRE-Q 362 (530)
Q Consensus 300 --------------~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~-~ 362 (530)
.....++..+.++. ...+.. -+++.+...+..+ .+......+||+++.++.. .++ .
T Consensus 443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~---~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E 515 (1073)
T 3gjx_A 443 VREFMKDTDSINLYKNMRETLVYLTHLD---YVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 515 (1073)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHHHHHHC---HHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHhcCC---HHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccc
Confidence 01122222222221 111111 1234444444432 2578899999999999763 322 2
Q ss_pred HHHHHHhCcHHHHHHHHhcC---c--hhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHH
Q 009623 363 IQAVIEANIIGPLVALLENA---E--FDIKKEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~~~---~--~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~ 435 (530)
...+. .+++.|+.+.... + ..++...+|+++..... ..++..+. ++..|...+...++.++..|+.
T Consensus 516 ~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~ 588 (1073)
T 3gjx_A 516 KRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACD 588 (1073)
T ss_dssp HHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHH
T ss_pred cchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHH
Confidence 22233 3677777776554 2 34566667888776542 12333333 5677778888889999999999
Q ss_pred HHHHHHhhhhh
Q 009623 436 GLENILKVGEA 446 (530)
Q Consensus 436 ~l~~ll~~~~~ 446 (530)
++..++..+..
T Consensus 589 af~~i~~~C~~ 599 (1073)
T 3gjx_A 589 TFIKIAQKCRR 599 (1073)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.20 E-value=0.009 Score=53.95 Aligned_cols=177 Identities=16% Similarity=0.105 Sum_probs=115.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhc----cCCCC
Q 009623 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFC----RGKPQ 235 (530)
Q Consensus 163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~----~~~~~ 235 (530)
.+...+-+.+..-+..++..|.......+. .+.. .+..+++.+. .+++..+...++.+|..+. .....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344455555666666666666554433221 1111 2222333221 3557777777777766653 32233
Q ss_pred CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009623 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~ 315 (530)
........++|.|+.-+.+..+.++..+-.++..+....+ -..+++.++.-+.+.++..+..++..++.+...
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 3344457789999999988888888887777655542111 124567788889999999999999999998753
Q ss_pred CchhhHHHhhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009623 316 DDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 316 ~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.... ....+ +.+..++.+. +..||..|..++..+-.
T Consensus 198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 3222 23467 9999999998 99999999999987755
No 107
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.18 E-value=0.062 Score=49.61 Aligned_cols=202 Identities=13% Similarity=0.090 Sum_probs=148.5
Q ss_pred HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch----hhHHHhh-cCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009623 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM----QTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 279 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
+.+...+++..|+..|..-+.+.+..+..+++++...... ....+.. ..++..|+.-.. ++++--.+...|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence 4466779999999999999999999999999999875432 2233332 233333333333 4455555555555
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhccCCCChHHH
Q 009623 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ---GCIKPLCDLLVCPDPRIV 430 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~l~~L~~lL~~~~~~v~ 430 (530)
-++.+ ......++..+.+..+.+.++.++.+|...|..++..+..... ..+..++.. .+...+..+|.+++.-++
T Consensus 149 ecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 149 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH-HHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 55444 5667778888888899999999999999999999999887643 333333433 346778889999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009623 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
..++..|+.++-.-.... .....+.+..-+..+..|..++...|+-.|..+..=|
T Consensus 227 RQSlKLLgelLldr~N~~--------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvF 281 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFT--------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF 281 (341)
T ss_dssp HHHHHHHHHHHHSGGGHH--------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHH--------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeee
Confidence 999999999997655432 2366677777888999999999999999998887643
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.11 E-value=0.024 Score=52.34 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=138.1
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009623 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
.+...+.+..|+..|..-+.+.+..+..++.++.......+ +.+.. -...+..++....++++.-.+-..|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 34456788889999988889999999999999987654322 22222 1222222332334555555555556555
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCCchhHHHHH
Q 009623 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPAL 306 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~~~~~a~ 306 (530)
++...........+.+-.+...+..++=++..+|..++..+..........++.. .++...-.+|.+++.-++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 5553333333334455566777778888899999999988876655544445543 3567788899999999999999
Q ss_pred HHHhHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009623 307 RTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 307 ~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
..||.+...... ...++-+..-+..++.+|++. +..++.+|..+.--+.+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 999999864221 222333556789999999999 99999999998887776
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.92 E-value=0.13 Score=45.37 Aligned_cols=187 Identities=12% Similarity=0.121 Sum_probs=124.1
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------hCCCCc-----hhHHHHHHHHhHhhcCCchhhHH
Q 009623 256 DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEF-------LMHPSP-----SVLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~l-------L~~~~~-----~~~~~a~~~L~nl~~~~~~~~~~ 322 (530)
+++.++.|+.-|+.=-+..++....+.. .|.+..|++= +..+.- .-...|+..+-.+++ +++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 4455677666665543333333333332 2444444322 222221 123455556666665 5666678
Q ss_pred HhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009623 323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
++++++.-.|.++|.... -+.+|-.+..+++.+.. ++++.+..+++.+++|..++.++.++.-.|.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 889999888888887652 24688899999999987 7889999999999999999999999999999999999998
Q ss_pred hcCCCHHHHHHHHHc--------CChHHHH-hccCCCChHHHHHHHHHHHHHHhhhh
Q 009623 398 TSGGTHEQIKFLVIQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 398 ~~~~~~~~~~~l~~~--------~~l~~L~-~lL~~~~~~v~~~al~~l~~ll~~~~ 445 (530)
.. +.....+++.. .++..++ .+.+.+++.+...++.+..++.....
T Consensus 173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r 227 (268)
T 2fv2_A 173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 227 (268)
T ss_dssp HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence 87 33444444321 2233333 34467788888888888888775543
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.78 E-value=0.083 Score=51.17 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHH
Q 009623 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250 (530)
Q Consensus 171 ~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ 250 (530)
.+...+..|+..|.....+-|...+. ++..+++++ .+.+..++..|+..|..+|.+ .....+...|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 56889999999999999888887666 688899999 888999999999999999987 236778889999
Q ss_pred hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC-CchhhHHHhhcCch
Q 009623 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-DDMQTQCVIEYQAL 329 (530)
Q Consensus 251 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~l 329 (530)
+|.++++.-...+-++|..+...++. +.+..+...+.++++.+|..++..|..-... .......-++.-++
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 99998877666666677666554432 2233344444446788999888888554432 11111122233445
Q ss_pred HHHHHhhcCC
Q 009623 330 PCLLNLLSGN 339 (530)
Q Consensus 330 ~~L~~lL~~~ 339 (530)
..+.++|.+-
T Consensus 180 ~~ikK~L~DV 189 (507)
T 3u0r_A 180 TESKKVLEDV 189 (507)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHhccc
Confidence 5666666443
No 111
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.52 E-value=0.22 Score=45.80 Aligned_cols=179 Identities=15% Similarity=0.155 Sum_probs=122.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC
Q 009623 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY 340 (530)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 340 (530)
..+...| ++.-++...+.-+++.+++..+...++..+..+....+..|-..+.... ... .--...+|.++..+.-..
T Consensus 261 tR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~-t~L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAK-TPLENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGT-SCCTTHHHHHHHHHHHCC
T ss_pred HHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhh-ccccccchHHHHHhccCC
Confidence 3333334 3444556678889999999999999999999999999999988764322 110 112357888888886444
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-------chhHHHHHHHHHHH-------hhc------C
Q 009623 341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-------EFDIKKEAAWAISN-------ATS------G 400 (530)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~n-------l~~------~ 400 (530)
+.++.......|+|..++........+..|.++.|...+... +..-++.||..++| +.. +
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N 417 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN 417 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence 889999999999999999888888888999999999987532 23345555555554 431 1
Q ss_pred C--------CHHHHHHHHHcCChHHHHhccCCCCh------HHHHHHHHHHHHHHh
Q 009623 401 G--------THEQIKFLVIQGCIKPLCDLLVCPDP------RIVTVCLEGLENILK 442 (530)
Q Consensus 401 ~--------~~~~~~~l~~~~~l~~L~~lL~~~~~------~v~~~al~~l~~ll~ 442 (530)
| ...+...+++.++++.|..+|+.+.- +++..++..+..++.
T Consensus 418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR 473 (619)
T 3c2g_A 418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR 473 (619)
T ss_dssp SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence 1 23455566777889999999874421 355555555444443
No 112
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.28 E-value=0.0035 Score=56.26 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=28.1
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009623 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
+.|..++.+++|.++..+...++ .+.|..+ .++ ++.||..+...|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 44666677777777777776643 2344444 555 778887766443
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.28 E-value=0.0051 Score=55.16 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=80.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009623 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242 (530)
Q Consensus 163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 242 (530)
.|..++.++++.++..++..+ + ...+..++ ++++..++..+...+ .
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l-------~-----------~~~L~~L~-~D~d~~VR~~aA~~l---~------------ 147 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL-------P-----------LEQLEQMA-ADRDYLVRAYVVQRI---P------------ 147 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS-------C-----------TGGGGGGT-TCSSHHHHHHHHHHS---C------------
T ss_pred HHHHHHcCCCHHHHHHHHHhC-------C-----------HHHHHHHH-cCCCHHHHHHHHHhc---C------------
Confidence 455556666666666665532 0 01223333 666677777666521 0
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH
Q 009623 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 322 (530)
.+.+..++.++++.|+..++.. +. -+.+..++.++++.++..++..+
T Consensus 148 --~~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------- 194 (244)
T 1lrv_A 148 --PGRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------- 194 (244)
T ss_dssp --GGGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC-------------
T ss_pred --HHHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC-------------
Confidence 0123345556677777766553 11 12344566777777887777542
Q ss_pred HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009623 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 394 (530)
..+.|..++.++ +..||..++..++ .+.|..+ .++++.|+..+...|
T Consensus 195 -----~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -----RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -----CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -----CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 124566667777 8888888777643 2344444 777888888876554
No 114
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.24 E-value=0.2 Score=43.84 Aligned_cols=144 Identities=15% Similarity=0.046 Sum_probs=104.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhC-CCchhhh
Q 009623 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAG-DSPRCRD 195 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~ 195 (530)
++....+.+++. .++|..|+..|+.+ .... ..++.+.. +...++..+++.+..+++.++. ..++
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 455556666666 79999999998887 3111 23566666 5556889999999999999984 3332
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009623 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
..++.+...+ .+++..+++.|+..+.-.+.. + ........++|.|..+..+++.-|+..+.|.|..++...+
T Consensus 139 -----~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 -----KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp -----TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred -----HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 1456666666 889999999999988665543 2 1223335577888888888889999999999999999988
Q ss_pred HHHHHHHH
Q 009623 276 DKIQAVIE 283 (530)
Q Consensus 276 ~~~~~~~~ 283 (530)
+.+..+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665554
No 115
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.21 E-value=0.008 Score=59.08 Aligned_cols=160 Identities=19% Similarity=0.141 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh
Q 009623 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL 210 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll 210 (530)
..+|+.|+.+|+.+ ..-++. ..++..++..+..+.++++..++-.|..+ .+ .-.. -.++++.++..|
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~D-LL~~--Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KE-FVED--KDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GG-GCCC--HHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HH-HHHH--HHHHHHHHHhhc
Confidence 46899999999998 533332 34455555556778899999999999887 11 1111 133566777777
Q ss_pred cCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009623 211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (530)
Q Consensus 211 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 288 (530)
.+.+.+++..|+.+|.-++ . ......++..+-..|.+.|+ .-...++..|+.++..+.. .......+|
T Consensus 309 -~D~DDDVRAVAAetLiPIA--~----p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVP 378 (800)
T 3oc3_A 309 -SSPDEDIKLLSAELLCHFP--I----TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLK 378 (800)
T ss_dssp -TCSSHHHHHHHHHHHTTSC--C----SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGG
T ss_pred -CCcccHHHHHHHHHhhhhc--c----hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHH
Confidence 7788999999999999888 1 13345666666666654321 1223344455555433321 011237899
Q ss_pred HHHHhhCCCCchhHHHHHHHHhHhh
Q 009623 289 RLAEFLMHPSPSVLIPALRTVGNIV 313 (530)
Q Consensus 289 ~L~~lL~~~~~~~~~~a~~~L~nl~ 313 (530)
+|.+++.+.-.+||..++.++..+.
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.05 E-value=0.14 Score=44.89 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=102.4
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCCchhHHHHHHHHhHhhc-CCchh
Q 009623 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVT-GDDMQ 319 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~-~~~~~ 319 (530)
..+++....+..++..+++..++..|+.+ .... .+++.+.. +...+++.++..+..+++.++. ..++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 44556666667777789999999988887 3111 34566666 5667889999999999999985 3332
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-----CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009623 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-----NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 394 (530)
..++.+..+..++ ++.+|+.|...+.-.+.. +++ -+++.|-.+..+++.-||+.+.|+|
T Consensus 139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~--------~ll~iL~~L~~D~s~yVrKSVan~L 202 (240)
T 3l9t_A 139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPN--------EAIRRIADLKEDVSEYVRKSVGNAL 202 (240)
T ss_dssp -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHH--------HHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHH--------HHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2577888999999 999999888776443321 221 2456666677777899999999999
Q ss_pred HHhhcCCCHHHHHHHHH
Q 009623 395 SNATSGGTHEQIKFLVI 411 (530)
Q Consensus 395 ~nl~~~~~~~~~~~l~~ 411 (530)
..++.. +|+....+++
T Consensus 203 rD~SK~-~Pd~V~~~~~ 218 (240)
T 3l9t_A 203 RDISKK-FPDLVKIELK 218 (240)
T ss_dssp HHHHTT-CHHHHHHHHH
T ss_pred HHHhhh-CHHHHHHHHH
Confidence 999987 5666555443
No 117
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.00 E-value=0.17 Score=44.72 Aligned_cols=141 Identities=12% Similarity=0.158 Sum_probs=106.5
Q ss_pred HHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHH
Q 009623 91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFV 165 (530)
Q Consensus 91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~ 165 (530)
..|+..|..+++. ++....+++..+.-.|..+|+..+ ...+|..++.+++.++. ++++....+.+.+++|..+
T Consensus 74 cnaLaLlQcvAsh--petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVASH--PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHC--TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHcC--cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 4566666777765 677888888887777788887654 34688899999999887 4577777888999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-------hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009623 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 166 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~-------~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+.++.+++-.+..|..++..|..+.......+. -..++..++..+...+++.+.+.+++|-..|+.+.
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 999999999999999999998866654332211 11234445555556778899999999999998874
No 118
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.98 E-value=0.79 Score=51.47 Aligned_cols=301 Identities=9% Similarity=0.044 Sum_probs=169.1
Q ss_pred CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC---
Q 009623 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASG--- 147 (530)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~-~~~~~~i~~~a~~~L~~l~~~--- 147 (530)
.+..++..+.++ +++.+.+|-..|.++-.. .+ ....+...|. .+.++.+|..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 355566555554 667788888888776432 11 2333444333 333489999999999987653
Q ss_pred --ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009623 148 --TSEHTKVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (530)
Q Consensus 148 --~~~~~~~~~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a 222 (530)
+++.+..+ ...++..+...... .+..++...+.+++.|+...-..+ -.++++.++.++.. +......+
T Consensus 81 ~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~--~~~~~e~~ 153 (1204)
T 3a6p_A 81 GMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ--GETQTELV 153 (1204)
T ss_dssp GSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT--CHHHHHHH
T ss_pred cCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC--CHHHHHHH
Confidence 23333333 33344444433211 457889999999999874321111 12467777877733 44557778
Q ss_pred HHHhhhhccCC---CCCChhh-----------hhchHHHHHHhhcC-------------------CChhHHHHHHHHHHH
Q 009623 223 TWTLSNFCRGK---PQPPFDQ-----------VSPALPALAHLIHS-------------------NDDEVLTDACWALSY 269 (530)
Q Consensus 223 ~~~L~~L~~~~---~~~~~~~-----------~~~~l~~L~~ll~~-------------------~d~~v~~~a~~~l~~ 269 (530)
+.+|..|+... ....... ...+++.+..++.. .+..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 88888886542 1111110 11333444444432 123456667777766
Q ss_pred hccCChHHHHHHHHhC--cHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc--hhhHHHhh---cCchHHHHHhhc-----
Q 009623 270 LSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIE---YQALPCLLNLLS----- 337 (530)
Q Consensus 270 l~~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~--~~~~~~~~---~~~l~~L~~lL~----- 337 (530)
....-+ ...+.... +++.+..++. ++.++..|+.+|..++.... .....++. ...+..++..+.
T Consensus 234 ~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 554332 12233332 6777776665 46789999999999987442 21111221 111334444432
Q ss_pred --CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009623 338 --GNYKKSIKKEACWTVSNITAGNREQIQAVIE-----------ANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 338 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
++.+.++.+..+.++..++. ....++. .++++.++.+..+++..+-..++.....+...
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11145677777777777762 1222221 24678888888888888888887766666543
No 119
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.45 E-value=1 Score=43.74 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=89.6
Q ss_pred CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 009623 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (530)
Q Consensus 214 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l 293 (530)
.+....+-|+..+..+....| .....++..++.+....|..|+..++..|..+|.. +.+. .+.+.|.++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql 108 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL 108 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence 357788888888888877654 23466788899999999999999999999999977 3333 466789999
Q ss_pred hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009623 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 294 L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
|..+++.-...+-.+|..+...++.. .+..+..-+..+ ++.+|..+...|..-.
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLSTKL 162 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHHHHG
T ss_pred HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHHHHH
Confidence 99988777777767776666544432 344555555556 7788888777775533
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.31 E-value=0.48 Score=42.01 Aligned_cols=142 Identities=14% Similarity=0.084 Sum_probs=97.9
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-----HHHHHHH-----
Q 009623 341 KKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGT-----HEQIKFL----- 409 (530)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~l----- 409 (530)
+.....++..||..+.. +......++. .+.+..+...+.++++.++..|+..|.-++.... ....+.+
T Consensus 67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 44667788888888864 3455555654 5678888888888899999999888877765322 1111221
Q ss_pred -HHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009623 410 -VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487 (530)
Q Consensus 410 -~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~ 487 (530)
-+..-...+++.++ +.+.+....++..+..++...+.... --..+..|..+|..+.|+.+....++++..+..
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~-----R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 12235667888777 45667888888888888776543221 123677888999999999999989998866554
Q ss_pred H
Q 009623 488 K 488 (530)
Q Consensus 488 ~ 488 (530)
.
T Consensus 221 ~ 221 (233)
T 2f31_A 221 V 221 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 121
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.15 E-value=0.7 Score=40.96 Aligned_cols=141 Identities=13% Similarity=0.152 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhcCChhhHHHHHh-CC
Q 009623 91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIASGTSEHTKVVID-HG 159 (530)
Q Consensus 91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~----~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g 159 (530)
..-+..|+..+...+..-++.+ ..+++..|+++|.. + .+...+..++.||..+.. +......+.. .+
T Consensus 19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~ 96 (233)
T 2f31_A 19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEE 96 (233)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSS
T ss_pred HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcH
Confidence 3455566655554322334455 35557777776653 1 125778999999999987 5666666665 56
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009623 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (530)
Q Consensus 160 ~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~ 227 (530)
.+..+...|.++++.++..++..|+.+|..+. .. ...++ +..-..+++..+..+.+.+.+.+++..+.
T Consensus 97 ~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN 176 (233)
T 2f31_A 97 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN 176 (233)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 78899999988999999999999998886543 11 22221 22245556666644455666666666665
Q ss_pred hhccCC
Q 009623 228 NFCRGK 233 (530)
Q Consensus 228 ~L~~~~ 233 (530)
.+....
T Consensus 177 ~li~~~ 182 (233)
T 2f31_A 177 ALITPA 182 (233)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 565554
No 122
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.05 E-value=0.98 Score=41.70 Aligned_cols=174 Identities=11% Similarity=0.056 Sum_probs=99.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCch
Q 009623 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG----AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~ 192 (530)
+..+.++++.+. +.+.-++-.+.-.+. ++.....+.+.. ++..++..+.. ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 345555554433 334444444444443 444444443321 22334444443 446678889999999987665
Q ss_pred hhhhHhhc--CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHH
Q 009623 193 CRDLVLSQ--GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALS 268 (530)
Q Consensus 193 ~~~~i~~~--~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~ 268 (530)
.++.+... .++..+...+ .+.+..++..+..++.|++... ..........++..+..++.. .|.+....++.+|+
T Consensus 181 g~~~l~~~~~~il~~~~~~~-~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELK-SGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGG-SSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 55555432 1233333333 4567888889999999988653 112222333455555555643 58899999999999
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009623 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (530)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 296 (530)
++...+.+..+.....++-..+-.+...
T Consensus 260 tL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 260 TLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 9997765544433344554444444444
No 123
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.00 E-value=1.9 Score=48.43 Aligned_cols=296 Identities=9% Similarity=0.039 Sum_probs=160.6
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHhhhCC-----Cchhhh
Q 009623 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGD-----SPRCRD 195 (530)
Q Consensus 123 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~nl~~~-----~~~~~~ 195 (530)
..++...++..+.+|-..|..+-. +++ +...+...| .+.+..++..|+.+|.+.... .++.+.
T Consensus 19 ~~~~p~~~~~~r~~Ae~~L~~~~~-~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 19 VMMDPNSTQRYRLEALKFCEEFKE-KCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHH-HCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHhCCCCChHHHHHHHHHHHHHHh-Cch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 344332236788888888877654 221 233333333 346788999999999887632 222222
Q ss_pred hHhhcCChHHHHHhhcC--CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009623 196 LVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
.+ +..++..+...... .....++..++.++..++...-. .....+++.++.++.+ ++.....++.+|..+++.
T Consensus 89 ~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 89 YL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 22 22233333322101 14577888888899888876411 2346788888888866 455566677777777532
Q ss_pred -------ChHHHHH---HHHh---CcHHHHHHhhCC-------------------CCchhHHHHHHHHhHhhcCCchhhH
Q 009623 274 -------TNDKIQA---VIEA---GVFPRLAEFLMH-------------------PSPSVLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 274 -------~~~~~~~---~~~~---~~i~~L~~lL~~-------------------~~~~~~~~a~~~L~nl~~~~~~~~~ 321 (530)
...+... .+.. .++..+..++.. .+..+...++.++.+...--+ ..
T Consensus 164 v~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~ 241 (1204)
T 3a6p_A 164 VVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MS 241 (1204)
T ss_dssp HHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HH
T ss_pred HccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HH
Confidence 1111111 1111 222333333322 123356667777766554222 12
Q ss_pred HHhhcC--chHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHH---hCcHHHHHHHHh--------cCchhH
Q 009623 322 CVIEYQ--ALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQAVIE---ANIIGPLVALLE--------NAEFDI 386 (530)
Q Consensus 322 ~~~~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~---~~~i~~L~~ll~--------~~~~~v 386 (530)
.+.+.. +++.+..++. ++.++..|+.+|..++... ++....++. ...+..++..+. +.+.++
T Consensus 242 ~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~ 318 (1204)
T 3a6p_A 242 HITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVF 318 (1204)
T ss_dssp HHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHH
T ss_pred HHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHH
Confidence 233332 6777776665 5678999999999999732 343322322 111334444432 224567
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHH-----------cCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009623 387 KKEAAWAISNATSGGTHEQIKFLVI-----------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~-----------~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~ 443 (530)
.+..+..+..+.. .. ..++. .++++.+..+...++..+...++.....+++.
T Consensus 319 ~k~l~~ll~~lg~----~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 319 LKRLCQVLCALGN----QL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHH----HH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHH----HH-HHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 7777777777652 11 12221 13466677777777777777766666655544
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.95 E-value=2.3 Score=39.26 Aligned_cols=185 Identities=16% Similarity=0.114 Sum_probs=109.4
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009623 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
..+.+++. -....+-+++..+.-.+. .+.....+.+. .++..+...+.....+..+.-++++++|+..+. ...
T Consensus 106 ~~l~kil~-WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~ 182 (304)
T 3ebb_A 106 QILWKAIN-CPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-AGQ 182 (304)
T ss_dssp HHHHHHHT-SCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHH
T ss_pred HHHHHHHc-CCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-hhH
Confidence 44555553 233455666666655543 23222222221 233344455544335667899999999998763 344
Q ss_pred HHHHH--hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC----CHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHH
Q 009623 364 QAVIE--ANIIGPLVALLENAEFDIKKEAAWAISNATSGG----THEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEG 436 (530)
Q Consensus 364 ~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~----~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~ 436 (530)
+.+.. ..+++.+...+.+.+..++..++..+.|++... +.+.... ++..+..++. ..|++....++-+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHhccCCHHHHHHHHHH
Confidence 44443 234455555555557889999999999998631 2222222 3444444443 4688999999999
Q ss_pred HHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009623 437 LENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLE 491 (530)
Q Consensus 437 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~il~ 491 (530)
|++++..+.. ........|..+.+..+... ....|.+-|..+++
T Consensus 258 LGtL~~~~~~-----------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 258 LGTLISDDSN-----------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHHHHTTCHH-----------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHHHHhCChh-----------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 9999965332 34455555666666666554 66778887777764
No 125
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.86 E-value=0.57 Score=45.00 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=108.2
Q ss_pred hhhHHHhhcCchHHHHHhhcC----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhH
Q 009623 318 MQTQCVIEYQALPCLLNLLSG----------NYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDI 386 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v 386 (530)
...+.+. .+++..|+.+|.. ..+......+..||..+... ......++. ...+..|...+.+..+.+
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 4444444 4455666666631 11346777888888888644 455555554 567899999999889999
Q ss_pred HHHHHHHHHHhhcCCC-----HHHHHHH------HHcCChHHHHhccCC-CChHHHHHHHHHHHHHHhhhhhhhhcCCCC
Q 009623 387 KKEAAWAISNATSGGT-----HEQIKFL------VIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNLGNTD 454 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~l~~L~~lL~~-~~~~v~~~al~~l~~ll~~~~~~~~~~~~~ 454 (530)
+..|+..|.-++.... ....+.+ -+..-...+++.|+. .+.+....++..+..++...+....
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~----- 253 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----- 253 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----
Confidence 9999999988776432 1111111 223457788888886 5677888888888888876543321
Q ss_pred chhhHHHhhhhccHHHHHHHhcCCCHHHHHH
Q 009623 455 VNVFTQMIDDAEGLEKIESLQTHDNAEIYEK 485 (530)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~ 485 (530)
--..+..|..+|..+.+..+....++++...
T Consensus 254 R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 254 RVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 1236777889999999999988888877543
No 126
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.66 E-value=1.3 Score=42.56 Aligned_cols=157 Identities=12% Similarity=0.114 Sum_probs=104.3
Q ss_pred HHHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHH
Q 009623 76 PVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTNI 144 (530)
Q Consensus 76 ~~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~----------~~~~~i~~~a~~~L~~l 144 (530)
..++..|.++-. ......+..|+.-+...+..-++.++ .+++..|+.+|.. ..+...+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 455666665432 22345677777666654333456666 4557888887752 11257889999999999
Q ss_pred hcCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhc
Q 009623 145 ASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLN 211 (530)
Q Consensus 145 ~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~ 211 (530)
.. +......++. ...+..|...|.++.+.++..++.+|+.+|.... .. ...++ +..-..+++..+.
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 87 5556666665 5778999999999999999999999999996553 21 22222 2334667788774
Q ss_pred CCCchhHHHHHHHHhhhhccCCC
Q 009623 212 GQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 212 ~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
...+.+...+++..+..+....+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Confidence 44567777766666666666543
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.14 E-value=5.1 Score=44.21 Aligned_cols=172 Identities=14% Similarity=0.166 Sum_probs=110.2
Q ss_pred hHHHHHhhcC---CCchhHHHHHHHHhhhh----ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009623 203 LVPLLAQLNG---QPKLSMLRNATWTLSNF----CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 203 i~~Ll~ll~~---~~~~~~~~~a~~~L~~L----~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
+..+..++.. ..++.+...++.+++.| |...+.........+...+...+...+.+-..-++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 4445555522 12455555566555554 44433333344555666677777777888888899999998642
Q ss_pred HHHHHHHHhCcHHHHHHhhCC-----C--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHH
Q 009623 276 DKIQAVIEAGVFPRLAEFLMH-----P--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKE 347 (530)
Q Consensus 276 ~~~~~~~~~~~i~~L~~lL~~-----~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~ 347 (530)
..++.|.+++.. . ...++..|+++|.+++...+... -+.+++++.+. .++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence 345666666642 1 23577889999999986554333 34567777432 28899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCH
Q 009623 348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
|+..|.... -+. ..+..+...+.. .+..|.......|.+++....+
T Consensus 534 A~~~Lm~t~-P~~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFESK-PSV---------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHTC-CCH---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHC-cCH---------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 998885431 122 244556666655 4788999999999999987665
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.81 E-value=2.5 Score=40.55 Aligned_cols=140 Identities=14% Similarity=0.085 Sum_probs=96.0
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-----HHHHH-----
Q 009623 341 KKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE-----QIKFL----- 409 (530)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-----~~~~l----- 409 (530)
+.....++..||..+... ......++. .+.+..+...+.+..+.++..++..|..++....++ ....+
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 456677888888888654 445555554 567888888888888999999987777766543211 11111
Q ss_pred -HHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009623 410 -VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS 486 (530)
Q Consensus 410 -~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a 486 (530)
-+..-...+++.+. ..+.+....++..+..++...+.... --.++..|..+|..+.|..|....++++....
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-----R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence 12234667777776 45667888888888888876654322 12367889999999999999988888876543
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.42 E-value=7.3 Score=42.94 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=109.0
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHhhhC----CCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhh
Q 009623 161 VPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 161 i~~L~~lL~~----~~~~~~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L 229 (530)
+..+..++.+ .++.+++.++.+++.+.. ..+.|.. ..++.+.+.+. ...+.+-...++.+|.|+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 4556666655 467788888888887752 3222221 22444444432 344667778889999998
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--CCCCch
Q 009623 230 CRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPS 300 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~ 300 (530)
-.. ..++.|.+++.. ....++..|+++|..+....+..++ +.++++. ...+++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence 752 356777777642 1356888999999999876654433 4566676 345778
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009623 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 301 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
+|..|+..|-.. ++.. ..+..+...+..+.+..|.....-.|.+++..+
T Consensus 530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 888888877432 2221 235667777777658888888888888888754
No 130
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=92.88 E-value=3.9 Score=39.06 Aligned_cols=234 Identities=14% Similarity=0.040 Sum_probs=111.2
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009623 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
+..++...+..|+.++.+++++-|+..-.+|.++-+.-...|..+.. .+-..+.+.+.....-.-....+.+++.+..+
T Consensus 123 k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinG 201 (403)
T 3fga_B 123 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 201 (403)
T ss_dssp TTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHcc
Confidence 34444556788999999999999999998888876554444443322 12333444442222223333445555555554
Q ss_pred CCC-CChhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009623 233 KPQ-PPFDQVSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 233 ~~~-~~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 310 (530)
-.. .......-....|+.+-....-. .-.....++......++.....+ +..|+..=-..+..-...-+.-+.
T Consensus 202 fa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele 276 (403)
T 3fga_B 202 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE 276 (403)
T ss_dssp CCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHH
Confidence 421 12222222334444444433211 11222333333333333322211 122222111122222222233344
Q ss_pred HhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHH----hcC
Q 009623 311 NIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALL----ENA 382 (530)
Q Consensus 311 nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll----~~~ 382 (530)
.+....+ ...+. +...+...+...+.+. +..|-+.|.....| +.+..++. ..++|.++..+ ...
T Consensus 277 ~iLe~~~~~~f~~-i~~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~~~~H 348 (403)
T 3fga_B 277 EILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSKTH 348 (403)
T ss_dssp HHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhCCHHHHHH-HHHHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 4443222 22211 2223566777778877 77777776654321 22222222 12455544444 222
Q ss_pred -chhHHHHHHHHHHHhhcC
Q 009623 383 -EFDIKKEAAWAISNATSG 400 (530)
Q Consensus 383 -~~~v~~~a~~aL~nl~~~ 400 (530)
+..|+..+..++.-+...
T Consensus 349 Wn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 349 WNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 788998888888877653
No 131
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.72 E-value=4.8 Score=38.59 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=97.2
Q ss_pred HHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 009623 77 VMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA 145 (530)
Q Consensus 77 ~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~----~------~~~~i~~~a~~~L~~l~ 145 (530)
.++..|.+... ......+..|+..+...+..-++.+. .+++..|+.+|.. . .+...+..++.||..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 34555554322 21233456666555543223344554 4557777776642 1 12578899999999998
Q ss_pred cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhcC
Q 009623 146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNG 212 (530)
Q Consensus 146 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~~ 212 (530)
. +......+.. .+++..+...|.++++.++..++.+|+.+|.... .. ...++ +..-..+++..+..
T Consensus 87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 8 5555555554 5778999999998999999999999998886543 11 22221 22345567777755
Q ss_pred CCchhHHHHHHHHhhhhccCCC
Q 009623 213 QPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 213 ~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
+.+.+...+++..+..+....+
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCS
T ss_pred CChHHHHHHHHHHHHHHHCCCC
Confidence 5667777666666666666643
No 132
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.59 E-value=9.1 Score=37.17 Aligned_cols=236 Identities=14% Similarity=0.026 Sum_probs=118.8
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009623 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
..+..++...+..|+.++.++++.-|+..-.+|..|-+.-...|..+.. .+-..+.+.+.......-....+.+++.+.
T Consensus 154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIi 232 (449)
T 2npp_B 154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII 232 (449)
T ss_dssp TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 3344555567888999999999999999998888876554445544332 133345555533333344455666666666
Q ss_pred cCCCC-CChhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009623 231 RGKPQ-PPFDQVSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 231 ~~~~~-~~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~ 308 (530)
.+... .......-....|+.+.....-. .-.....++......++.....+ +..|+..=-..+..-...-+.-
T Consensus 233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~e 307 (449)
T 2npp_B 233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNE 307 (449)
T ss_dssp SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHHH
Confidence 66522 22222223344455555544321 11222333333333333322211 1222222111222222223333
Q ss_pred HhHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc---
Q 009623 309 VGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLEN--- 381 (530)
Q Consensus 309 L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~--- 381 (530)
+..+....+ ...+.+ ...+...+..++.+. +..|-+.|+....| +.+..++. ..++|.++..+..
T Consensus 308 leeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L~~~s~ 379 (449)
T 2npp_B 308 LEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSK 379 (449)
T ss_dssp HHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHHHHHHH
Confidence 444443222 222222 234667777888887 77787777654322 22222222 1255666665522
Q ss_pred --CchhHHHHHHHHHHHhhcC
Q 009623 382 --AEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 382 --~~~~v~~~a~~aL~nl~~~ 400 (530)
-+..|+..|..++.-+...
T Consensus 380 ~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 380 THWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp CCSSTTHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHHH
Confidence 2667888888887766554
No 133
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.54 E-value=3.3 Score=37.62 Aligned_cols=134 Identities=15% Similarity=0.114 Sum_probs=85.9
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHh--hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHH
Q 009623 300 SVLIPALRTVGNIVTGDDMQTQCVI--EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPL 375 (530)
Q Consensus 300 ~~~~~a~~~L~nl~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L 375 (530)
.....|+..|-.++..-.... .++ +..++..|+ +.... .+.++..|+.+++...+.+|..+..+.+ ..++..+
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~-KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGY-KIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHH-HHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhh-HHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 345667777777765333332 333 233444444 22334 6789999999999999999999888775 3455666
Q ss_pred HHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHh
Q 009623 376 VALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK 442 (530)
Q Consensus 376 ~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~v~~~al~~l~~ll~ 442 (530)
+.-|.. ...-+++.-+.+|.-|+.... .+ ....+..|..++... ++.++..++..+..++.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 554433 233567777778877777531 11 134556666666655 88899999999888885
No 134
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=87.62 E-value=2.1 Score=34.07 Aligned_cols=76 Identities=9% Similarity=0.176 Sum_probs=53.5
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhh-hhccHHHHHHHhcCCC--------HHHHH
Q 009623 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMID-DAEGLEKIESLQTHDN--------AEIYE 484 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~--------~~v~~ 484 (530)
+++.|..-|..+++.+...+|.+|..|+..+... |...+. ....+..+.+....++ ..|..
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~ 119 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 119 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHH
Confidence 5677788888888999999999999999877542 333333 2333444444444433 67999
Q ss_pred HHHHHHHHhCCCCCC
Q 009623 485 KSVKLLETYWLDDED 499 (530)
Q Consensus 485 ~a~~il~~~~~~~~~ 499 (530)
+|.++++-.|+++..
T Consensus 120 ~AkEl~~ll~d~~~~ 134 (140)
T 1vdy_A 120 TAHETISAIFSEENG 134 (140)
T ss_dssp HHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHhCcCCC
Confidence 999999999986554
No 135
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=87.01 E-value=16 Score=32.52 Aligned_cols=100 Identities=9% Similarity=0.073 Sum_probs=70.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009623 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
-.+++.......+.+...+...+.++... ++.. . ..+++.++.+..+.+ .++|...+..+...+...++....
T Consensus 18 ~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~l---l-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~- 90 (257)
T 3gs3_A 18 VDWCNELVIASPSTKCELLAKVQETVLGS-CAEL---A-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH- 90 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGGG---H-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-
T ss_pred HHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHhH---H-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34444444433368889999999977664 2321 1 335777888776666 899999999999888755544433
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHhh
Q 009623 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNI 186 (530)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl 186 (530)
.++.|..++.+.++.+...++.+.+++
T Consensus 91 ----~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 91 ----VINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ----HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 467888889888899998888877776
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=86.66 E-value=2.2 Score=35.18 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=55.4
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009623 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~ 492 (530)
++..|..-|...++.++..+|..|..+++.+.. .|...+.....++.+..+... .++.|++++..+|+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~----------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK----------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH----------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH----------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 455666677788999999999999999987533 255566666667777766544 788999999999998
Q ss_pred hCCC
Q 009623 493 YWLD 496 (530)
Q Consensus 493 ~~~~ 496 (530)
|-..
T Consensus 123 W~~~ 126 (163)
T 1x5b_A 123 WSEE 126 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7553
No 137
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=86.64 E-value=4.9 Score=38.21 Aligned_cols=118 Identities=18% Similarity=0.149 Sum_probs=82.1
Q ss_pred hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhh
Q 009623 369 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK 448 (530)
Q Consensus 369 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~ 448 (530)
.++++.++.+..+.+.++|+.++..|...+.. ..+... .+++.|..+|.++++.++..++.+..++....-..-
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999988888999999999999888763 223322 357788888889999999888888887764332221
Q ss_pred hcCCCC---chhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009623 449 NLGNTD---VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 449 ~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
...... .+.....+.. ..+.|..+..+.+..|+-.|.+.++++.
T Consensus 136 ~~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 111100 1233444432 3466777788999999999999999854
No 138
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=86.57 E-value=8.1 Score=35.12 Aligned_cols=149 Identities=12% Similarity=0.106 Sum_probs=94.2
Q ss_pred HHHHHHhhcCC------ChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009623 245 LPALAHLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 245 l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 317 (530)
+..+..++.+. |......++-.|..++..-..-.+.+. +..++..|+ +.....+.+++.|.++|+.....+|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 33444455544 445567788888888765444444333 334444444 3344566799999999999999999
Q ss_pred hhhHHHhhc--CchHHHHHhhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHH
Q 009623 318 MQTQCVIEY--QALPCLLNLLSG----N--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIK 387 (530)
Q Consensus 318 ~~~~~~~~~--~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 387 (530)
.....+.+. .++..++.-|.. . ....+++.-+.+|.-|...+.. + ....+..|.+++... ++.+|
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHH
Confidence 888777643 444444444432 1 1335667777777777765421 1 134567777777766 88999
Q ss_pred HHHHHHHHHhhc
Q 009623 388 KEAAWAISNATS 399 (530)
Q Consensus 388 ~~a~~aL~nl~~ 399 (530)
..++..+..+..
T Consensus 178 ~Kvl~li~d~f~ 189 (315)
T 3qml_C 178 IKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 999988887763
No 139
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.32 E-value=2 Score=34.75 Aligned_cols=74 Identities=8% Similarity=-0.107 Sum_probs=59.9
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHhhh
Q 009623 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~al~~l~~ll~~~ 444 (530)
.+..|.+-+.+.++.++..|+..|-.++.++...+...+.+..++..|+.++.. .++.|...++..+.......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455677778889999999999999999998887777777788888889888863 46788888888777665443
No 140
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=85.08 E-value=2.2 Score=34.21 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=54.5
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009623 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
++..|..-|.+.++.++..++..|..+++.+.. .|...+.....++.+..+....++.|++++..+++.|
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~----------~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK----------IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----------HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH----------HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 455666667788899999999999988876533 2455555566667777776678899999999999987
Q ss_pred CC
Q 009623 494 WL 495 (530)
Q Consensus 494 ~~ 495 (530)
..
T Consensus 113 ~~ 114 (140)
T 3ldz_A 113 TD 114 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 141
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=85.03 E-value=0.73 Score=27.38 Aligned_cols=39 Identities=31% Similarity=0.499 Sum_probs=26.1
Q ss_pred HhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhh
Q 009623 11 SRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRR 50 (530)
Q Consensus 11 ~~~~~~k~~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~ 50 (530)
+|...||+.....+..+||.+ -.+.-|++|-+..+..|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRRR-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHHH-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 477889984333444444444 578888888888887763
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=85.00 E-value=3.4 Score=33.43 Aligned_cols=71 Identities=8% Similarity=-0.098 Sum_probs=57.6
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHH
Q 009623 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENIL 441 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~al~~l~~ll 441 (530)
.+..|.+-+.++++.++..|+..|-.++.++...+...+.+..++..|+.++.. .++.|+..++..+....
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999998887777787888889999988864 36788888777666544
No 143
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=84.80 E-value=7.7 Score=34.62 Aligned_cols=117 Identities=13% Similarity=0.145 Sum_probs=80.3
Q ss_pred CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 009623 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 449 (530)
Q Consensus 370 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~ 449 (530)
++++.++.+..+.+.++|+..+..|...+.. .++... .+++.|..++.++++.+...++.+...+....-..-.
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777766667899999999999888753 223222 3577888889999999999999988888764433221
Q ss_pred cCCCC---chhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009623 450 LGNTD---VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 450 ~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
...+. .+.....+. ...+.|..+..+.+..++-.|.+.++++.
T Consensus 127 ~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 11100 123344442 23466777788999999999999999854
No 144
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.73 E-value=28 Score=33.09 Aligned_cols=88 Identities=10% Similarity=0.126 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009623 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (530)
Q Consensus 88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 167 (530)
+.+...+..+++++-.. ++. .-.++++.++++-.+.+ .++|...+..|...+....+.... +++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLLK-----LIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 46888899999976543 332 12567999999988887 999999999999888755555433 46788888
Q ss_pred hCCCCHHHHHHHHHHHHhh
Q 009623 168 LYSPSDDVREQAVWALGNI 186 (530)
Q Consensus 168 L~~~~~~~~~~a~~~L~nl 186 (530)
|.+.++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 8888899998888888776
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=84.29 E-value=3.8 Score=34.07 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=56.6
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009623 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 487 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~a~ 487 (530)
++..|..-+.+.++.++..+|..|..+++.+... |...+.....++.|..+.. ..+..|++++.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 120 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVI 120 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 4566667778899999999999999999875432 5666777777888888764 35789999999
Q ss_pred HHHHHhCCC
Q 009623 488 KLLETYWLD 496 (530)
Q Consensus 488 ~il~~~~~~ 496 (530)
.+|+.|-..
T Consensus 121 ~li~~W~~~ 129 (171)
T 1juq_A 121 ELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987543
No 146
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=82.81 E-value=4.1 Score=32.89 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=57.3
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009623 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 487 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~a~ 487 (530)
++..|..-|.+.++.++..||..|..+++.+.. .|...+.....++.|..+.. ..+++|++++.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~----------~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 108 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE----------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVI 108 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHH
Confidence 456666667889999999999999999987533 25667777777888887754 25889999999
Q ss_pred HHHHHhCCCC
Q 009623 488 KLLETYWLDD 497 (530)
Q Consensus 488 ~il~~~~~~~ 497 (530)
.+|+.|-...
T Consensus 109 ~li~~W~~~f 118 (148)
T 1mhq_A 109 EILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 9999885543
No 147
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.65 E-value=4.2 Score=32.90 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=56.3
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009623 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 487 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~a~ 487 (530)
++..|..-+.+.++.++..++..|..+++.+.. .|...+....+++.|..+.. +.+++|++++.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~----------~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 118 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK----------RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKIL 118 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH----------HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH----------HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHH
Confidence 455666667788999999999999999876643 25666777777888887764 46899999999
Q ss_pred HHHHHhCC
Q 009623 488 KLLETYWL 495 (530)
Q Consensus 488 ~il~~~~~ 495 (530)
.+|+.|-.
T Consensus 119 ~li~~W~~ 126 (149)
T 3g2s_A 119 ELLYSWTV 126 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998854
No 148
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=81.40 E-value=3.5 Score=34.30 Aligned_cols=71 Identities=8% Similarity=-0.053 Sum_probs=56.4
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHH
Q 009623 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENIL 441 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~al~~l~~ll 441 (530)
.+..|.+-+.++++.++..|+..|-.++.++.......+.+..++..|+.++.. .++.|+..++..+...-
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456777788889999999999999999998776777777777888888888863 35678888877766544
No 149
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=80.16 E-value=2.4 Score=33.96 Aligned_cols=73 Identities=5% Similarity=-0.001 Sum_probs=57.3
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009623 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~ 443 (530)
.+..|.+-+.+.++.++..|+..|-.++.++.......+.+...+..|..+++..++.|...++..+......
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 4556777788889999999999999999888777666666667777787777777888999888877766543
No 150
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=79.87 E-value=6.6 Score=42.76 Aligned_cols=186 Identities=14% Similarity=0.062 Sum_probs=112.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC---CCchhHHHHHHHHhhh--hccCCCC
Q 009623 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNATWTLSN--FCRGKPQ 235 (530)
Q Consensus 161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~---~~~~~~~~~a~~~L~~--L~~~~~~ 235 (530)
+.-|+++.-+...+++..|-.+|......-+..+.. +++.+++.|.. ..+.+-.+-|+++|.. +... -.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~~ 208 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-LM 208 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-GG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-Hh
Confidence 556777777888999999999999888766655555 56777777754 4566667777777662 2111 12
Q ss_pred CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--------------------C----hHHHHHH----------
Q 009623 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--------------------T----NDKIQAV---------- 281 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--------------------~----~~~~~~~---------- 281 (530)
........+++.|+.....+.+.++.-+-.+...+... + ...+...
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 33455567777777776666665544433332222210 0 0001100
Q ss_pred HH---hCcHHHHHHhh-CCCC--chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009623 282 IE---AGVFPRLAEFL-MHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 282 ~~---~~~i~~L~~lL-~~~~--~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
.. .++...++.+. .... |.....++..+.++....+. .....++..+++.+.++ +|.+|+.|..++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 00 13334444554 3345 88888888886666643321 12334577788888888 999999999887665
Q ss_pred hc
Q 009623 356 TA 357 (530)
Q Consensus 356 ~~ 357 (530)
..
T Consensus 364 l~ 365 (997)
T 1vsy_5 364 CN 365 (997)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 151
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.71 E-value=3 Score=34.42 Aligned_cols=71 Identities=3% Similarity=-0.040 Sum_probs=55.3
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHHHHHHHHHHHH
Q 009623 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENIL 441 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~al~~l~~ll 441 (530)
.+..|.+-|.+.++.++..|+..|-.++.++...+...+.+..++..|+.++.. .++.|+..++..+...-
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999998877777677777788888777764 56788888777665443
No 152
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=75.30 E-value=19 Score=34.18 Aligned_cols=80 Identities=16% Similarity=0.037 Sum_probs=50.8
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009623 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
+..++...+..|+.++.++++.-|+....+|..+-+.-...|..+.. .+-..+.+.+.......-...++.+++.+..+
T Consensus 168 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIng 246 (392)
T 2jak_A 168 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 246 (392)
T ss_dssp TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 34445567788999999999999999999888876544444544322 23444556553333334445566666666665
Q ss_pred C
Q 009623 233 K 233 (530)
Q Consensus 233 ~ 233 (530)
.
T Consensus 247 f 247 (392)
T 2jak_A 247 F 247 (392)
T ss_dssp C
T ss_pred c
Confidence 4
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.52 E-value=2.4 Score=37.19 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=54.5
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009623 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
+++..|.+.|++.++.+++.|+..|..++.+.+.....++....++..|+.+++...++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999988887765333344555566677777777654447888888887777664
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.17 E-value=12 Score=32.72 Aligned_cols=72 Identities=13% Similarity=0.254 Sum_probs=53.2
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 009623 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~il~~ 492 (530)
++..|..-|.+.++.++..+|..|..+++.+... |...+....+++.|..+. ...+++|++++..+|+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~----------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 115 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT----------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQA 115 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH----------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH----------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4566667777899999999999999998776432 455555555666666553 45788999999999998
Q ss_pred hCC
Q 009623 493 YWL 495 (530)
Q Consensus 493 ~~~ 495 (530)
+-.
T Consensus 116 W~~ 118 (226)
T 3zyq_A 116 WAH 118 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 155
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=70.59 E-value=7 Score=30.65 Aligned_cols=94 Identities=19% Similarity=0.138 Sum_probs=61.3
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhc
Q 009623 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL 450 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~ 450 (530)
++|.|+..|++.+..+...++..|..+-. . +++.+...|.++|..=.. ++|..++...+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~~----~---------l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQS----I---------AMPHILTILQGNDIMWKY---WVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTHH----H---------HHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHccH----h---------hHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH---
Confidence 67899999999999998888888876421 2 355555666777765433 3444444332221
Q ss_pred CCCCchhhHHHhhhhccHHHHHHHhcC-----CCHHHHHHHHHHHHHhCC
Q 009623 451 GNTDVNVFTQMIDDAEGLEKIESLQTH-----DNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~v~~~a~~il~~~~~ 495 (530)
....+ ...|+.+..+ ..+++.+.|..|+++||.
T Consensus 93 -------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~ 130 (134)
T 3ut4_A 93 -------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYP 130 (134)
T ss_dssp -------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC-
T ss_pred -------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcc
Confidence 12222 3556666655 467899999999999987
No 156
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=70.50 E-value=75 Score=30.25 Aligned_cols=228 Identities=13% Similarity=0.074 Sum_probs=124.2
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhHhhcCCc---
Q 009623 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDD--- 317 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~--- 317 (530)
...+-.|+.++.++|+.-+...-.+|..+-..-..... ++...+-..+..++.. ....-....+.++|.+..|-.
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~-~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL 206 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 206 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence 45677788999999999888887777776544333332 2222333444444433 234456678888888887642
Q ss_pred --hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHH--HH
Q 009623 318 --MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEA--AW 392 (530)
Q Consensus 318 --~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a--~~ 392 (530)
+.... +...|+.+.....-...-..-+.++..+...++..... .+-.++..- -....++. +.
T Consensus 207 keehk~f-----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~tns~KevlFL~ 273 (403)
T 3fga_B 207 KEEHKIF-----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEVMFLN 273 (403)
T ss_dssp CHHHHHH-----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCSSCHHHHHHHHH
T ss_pred hHHHHHH-----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH--------HHHHHHHhCCCCCcHHHHHHHH
Confidence 22211 12344455544422233344455555555544433222 222233322 22233333 33
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHH--HhhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009623 393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI--LKVGEAEKNLGNTDVNVFTQMIDDAEGLEK 470 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~l--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (530)
-+..+.....+.....+. ..+...+..++.+.+-.|.+.|+....+= +...... .......+ +..
T Consensus 274 Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n-------~~~IlPii-----~p~ 340 (403)
T 3fga_B 274 ELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN-------AAKILPIM-----FPS 340 (403)
T ss_dssp HHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT-------HHHHHHHH-----HHH
T ss_pred HHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHh-------HHHHHHHH-----HHH
Confidence 444555555555544432 24677888899999999888877654221 1111110 00111111 345
Q ss_pred HHH-HhcCCCHHHHHHHHHHHHHhCCC
Q 009623 471 IES-LQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 471 l~~-l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
|.. ..+|.|+.|+..+..++..+.+-
T Consensus 341 L~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 341 LYRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 544 47899999999999999887553
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=69.28 E-value=14 Score=32.03 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=52.1
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 009623 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~il~~ 492 (530)
++..|..-|.+.++.++..+|..|..+++.+... |...+.....++.|..+. ...+.+|++++..+++.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~----------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP----------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH----------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH----------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3555666677899999999999999999875331 444455555566655553 45688999999999998
Q ss_pred hCC
Q 009623 493 YWL 495 (530)
Q Consensus 493 ~~~ 495 (530)
+-.
T Consensus 113 W~~ 115 (220)
T 1dvp_A 113 WAY 115 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 158
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=67.07 E-value=18 Score=29.48 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=51.8
Q ss_pred ChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHH-HHHHh---cCCCHHHHHHHHH
Q 009623 414 CIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQ---THDNAEIYEKSVK 488 (530)
Q Consensus 414 ~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~---~~~~~~v~~~a~~ 488 (530)
++..|..-|. ..++.++..|+..|..+++.+.. .|...+.....++. |..+. ..+...|++++..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~----------~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~ 123 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH----------RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLN 123 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH----------HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH----------HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 4556666665 57889999999999999887633 25666666666776 55554 2345799999999
Q ss_pred HHHHhCC
Q 009623 489 LLETYWL 495 (530)
Q Consensus 489 il~~~~~ 495 (530)
+|+.|-.
T Consensus 124 li~~W~~ 130 (157)
T 1elk_A 124 LIQSWAD 130 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 159
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=66.34 E-value=22 Score=31.63 Aligned_cols=134 Identities=10% Similarity=0.023 Sum_probs=75.9
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHH-HhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009623 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL-NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 301 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 379 (530)
.+-+++..+.-++...+.. +.+..++ ..+... .+..+.-++++++|+..+..-..+.+........++..+
T Consensus 70 ~~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~-~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i 141 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 141 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHS
T ss_pred ccchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCC-chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHH
Confidence 4666777776666543321 2222222 223344 678999999999999886541233333322344444443
Q ss_pred hc--------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC---------CCChHHHHHHHHHHHHHHh
Q 009623 380 EN--------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV---------CPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 380 ~~--------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~---------~~~~~v~~~al~~l~~ll~ 442 (530)
.+ .+..++..++..+.|++.....+. .+......+.+++. ..|++....++-++++++.
T Consensus 142 ~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~----~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 142 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN----SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC----SCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCchhHHHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 11 255788888999999886210000 00112223333332 2377899999999999997
Q ss_pred hhhh
Q 009623 443 VGEA 446 (530)
Q Consensus 443 ~~~~ 446 (530)
.++.
T Consensus 218 ~~~~ 221 (253)
T 3gae_A 218 VEPT 221 (253)
T ss_dssp HSGG
T ss_pred CcHH
Confidence 6544
No 160
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=66.14 E-value=99 Score=29.96 Aligned_cols=241 Identities=16% Similarity=0.119 Sum_probs=120.6
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCC
Q 009623 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGD 189 (530)
Q Consensus 111 ~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~ 189 (530)
..++...+-.|+++++++| +.-|...-.+|..+-..-...+..+.. .+-..+.+++.. ....-....+.+++.+..+
T Consensus 157 ~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 157 KYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 3344556778888888888 787877777777766644444444432 122344555433 1112223466677777644
Q ss_pred Cc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 009623 190 SP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS 268 (530)
Q Consensus 190 ~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 268 (530)
-. ..+.. ...-....|+.+.....-.........|+..++..++. ....++..|++.=-..+..-..-.+.-+.
T Consensus 235 fa~PLKee-hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~tns~KevlFL~ele 309 (449)
T 2npp_B 235 FALPLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVMALLKYWPKTHSPKEVMFLNELE 309 (449)
T ss_dssp CCSSCCHH-HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG----GHHHHHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred cCCCCcHH-HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH----hHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 21 11111 00001223333332222223334455566555554332 11223333333222233332223333444
Q ss_pred HhccC-ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh---cCchHHHHHhhcC-C--C-
Q 009623 269 YLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE---YQALPCLLNLLSG-N--Y- 340 (530)
Q Consensus 269 ~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~---~~~l~~L~~lL~~-~--~- 340 (530)
.+... .+...+.+.. .++..+...+.+.+..+.+.|+....| +... .++. ..++|.+...|.. . +
T Consensus 310 eile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~-~li~~n~~~IlPii~p~L~~~s~~HW 382 (449)
T 2npp_B 310 EILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYIM-SLISDNAAKILPIMFPSLYRNSKTHW 382 (449)
T ss_dssp HHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHH-HHHHTTHHHHHHHHHHHHTSCTTCCS
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHH-HHHHhchhhhHHhhHHHHHHHHHHhc
Confidence 44432 3333332332 567788888888888888888765432 2111 1221 2356777665522 1 1
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHH
Q 009623 341 KKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
+..++..|..++.-+...++.....
T Consensus 383 n~~V~~la~~vlk~l~e~d~~lf~~ 407 (449)
T 2npp_B 383 NKTIHGLIYNALKLFMEMNQKLFDD 407 (449)
T ss_dssp STTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 5679999999988887777664433
No 161
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=65.72 E-value=1.1e+02 Score=34.06 Aligned_cols=134 Identities=11% Similarity=0.082 Sum_probs=68.9
Q ss_pred CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-C--CHHHHHHHH------H
Q 009623 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-G--NREQIQAVI------E 368 (530)
Q Consensus 298 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~--~~~~~~~l~------~ 368 (530)
+..+...-++.+.++....+ ..+++.++-++-.......++.|-.++.+-.. + ........+ -
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 44455555666666554322 23344444333222133456777777766554 2 222222222 1
Q ss_pred hCcHHHHHH----HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 369 ANIIGPLVA----LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 369 ~~~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
...++.++. ++.+.++.++.-+...-..+...-+. + .+..++..|+.-..++...-+..++++|..+....
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~-~----~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~ 469 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT-Y----CQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLN 469 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH-H----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc-h----hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC
Confidence 345555554 44566888888887777766665442 2 22234455544444444444555777777666433
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.54 E-value=3.6 Score=35.88 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=53.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009623 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
+++..+.+.|++.++.++..|+..|..++.+.+.....++.+..++..|+.++....++.++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46777888888999999999999998887764333334555556777778777654447888877777666554
No 163
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=65.01 E-value=33 Score=32.20 Aligned_cols=133 Identities=10% Similarity=0.007 Sum_probs=75.6
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCchHHHH-HhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009623 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLL-NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
+-+++..+.-++...+.. +.+..++ ..+... .+..+.-++++++|+..+..-..+.+.+......+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~-~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~ 251 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 251 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSC
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCC-ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHH
Confidence 666777766666543321 1222233 333344 7889999999999998764312222222212334444331
Q ss_pred --------cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC---------CCChHHHHHHHHHHHHHHhh
Q 009623 381 --------NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV---------CPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 381 --------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~---------~~~~~v~~~al~~l~~ll~~ 443 (530)
..+..++..++..+.|++.....+ . .+...+..+..++. ..|++....++-+|++|+..
T Consensus 252 ~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~---~-~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 252 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKG---N-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHT---C-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhcc---c-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 124568888888889988631100 0 00122334444444 35889999999999999976
Q ss_pred hhh
Q 009623 444 GEA 446 (530)
Q Consensus 444 ~~~ 446 (530)
++.
T Consensus 328 ~~~ 330 (362)
T 3l3f_X 328 EPT 330 (362)
T ss_dssp CHH
T ss_pred CHH
Confidence 544
No 164
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=64.76 E-value=32 Score=37.44 Aligned_cols=188 Identities=13% Similarity=0.063 Sum_probs=108.2
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC----CCCchhHHHHHHHHh-----
Q 009623 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVG----- 310 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~~~~~a~~~L~----- 310 (530)
....++.-|+.+--+.-.+|+..|-.++..+...-...... +++.+++.|. ..+..-..-|+.+|.
T Consensus 130 l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~ 204 (997)
T 1vsy_5 130 LENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIH 204 (997)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhh
Confidence 33556677777777788899999999998877654433332 3445555543 445566666776654
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-H-----------------------HHHH--
Q 009623 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-R-----------------------EQIQ-- 364 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~-----------------------~~~~-- 364 (530)
..+..+... -..+++.|+.....+ ++.+++-+-.+...+.... . ..+.
T Consensus 205 ~~~~~d~~~-----~~~~~~ali~~~~~d-KpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~ 278 (997)
T 1vsy_5 205 RKLMTDYKD-----IGRLIFLLIECCRVN-ELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAV 278 (997)
T ss_dssp HHGGGCHHH-----HHHHHHHHHHTCSCS-SSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHH
T ss_pred hHHhcChHH-----HHHHHHHHHHhCcCC-CHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 112211111 123455566665555 6666665554444443210 0 0000
Q ss_pred ---------HHHH--hCcHHHHHHHHhc-Cc--hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHH
Q 009623 365 ---------AVIE--ANIIGPLVALLEN-AE--FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430 (530)
Q Consensus 365 ---------~l~~--~~~i~~L~~ll~~-~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~ 430 (530)
...+ .++...|+++.++ .+ .+....++..+.++...-+.. ....++..+++.+.+++|.++
T Consensus 279 ~~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp~~R 353 (997)
T 1vsy_5 279 KLAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHPEII 353 (997)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCHHHH
Confidence 0111 1344444565533 36 788888888877776432100 111246678888899999999
Q ss_pred HHHHHHHHHHHhh
Q 009623 431 TVCLEGLENILKV 443 (530)
Q Consensus 431 ~~al~~l~~ll~~ 443 (530)
..++.++..++..
T Consensus 354 ~~a~~~l~~il~~ 366 (997)
T 1vsy_5 354 HLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888865
No 165
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=63.00 E-value=24 Score=27.98 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=51.3
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC-ChHHHHhccCCCC--------hHHHHHHHHHHHHHH
Q 009623 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG-CIKPLCDLLVCPD--------PRIVTVCLEGLENIL 441 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~-~l~~L~~lL~~~~--------~~v~~~al~~l~~ll 441 (530)
+++.|.+-|...++.++..|+..|..|+..+++.....+.+.- .|..+..+--.++ ..|+..|-+++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 6678888888889999999999999999999988887766543 2333333322222 247777777666555
Q ss_pred hh
Q 009623 442 KV 443 (530)
Q Consensus 442 ~~ 443 (530)
..
T Consensus 130 d~ 131 (140)
T 1vdy_A 130 SE 131 (140)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 166
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=62.94 E-value=43 Score=32.13 Aligned_cols=134 Identities=10% Similarity=0.014 Sum_probs=77.7
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHH-HhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009623 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL-NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 301 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 379 (530)
.+-+++..+.-++...+.. +.+..++ ..+... .+..+.-++++++|+..+..-..+.+....+...+++.+
T Consensus 242 ~~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~-~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i 313 (425)
T 3pst_A 242 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 313 (425)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHH
Confidence 3666777777666544321 1222232 333344 788999999999999876432222332223345555554
Q ss_pred h--------cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC---------CCChHHHHHHHHHHHHHHh
Q 009623 380 E--------NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV---------CPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 380 ~--------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~---------~~~~~v~~~al~~l~~ll~ 442 (530)
. ..+..++..++..+.|++...... . .+...+..+..++. ..|++....++-+|++|+.
T Consensus 314 ~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~---~-~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 314 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG---N-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHS---C-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc---c-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 2 124568888888888988631100 0 00112334444443 3588899999999999996
Q ss_pred hhhh
Q 009623 443 VGEA 446 (530)
Q Consensus 443 ~~~~ 446 (530)
..+.
T Consensus 390 ~~~~ 393 (425)
T 3pst_A 390 VEPT 393 (425)
T ss_dssp HCHH
T ss_pred cCHH
Confidence 5544
No 167
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=61.89 E-value=77 Score=27.24 Aligned_cols=138 Identities=9% Similarity=0.016 Sum_probs=82.3
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchhhHHH
Q 009623 246 PALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (530)
Q Consensus 246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 323 (530)
..+..+..++.-+.+.-++..+...... .++. ++.+-.++. -+++.+....+.+++.+....+..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 3344555556666666677666655422 2221 222233333 357777777667777776544432
Q ss_pred hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009623 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 402 (530)
+.+.+..++.++ +.-+|+.|.-.+..... .+++. +++.+-..+.+++.-|++.+.|+|..+... +
T Consensus 125 ----~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~ 190 (220)
T 2b6c_A 125 ----LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-N 190 (220)
T ss_dssp ----HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhh-C
Confidence 345688888888 88888877765432221 22211 233333366777899999999999999987 4
Q ss_pred HHHHHHHH
Q 009623 403 HEQIKFLV 410 (530)
Q Consensus 403 ~~~~~~l~ 410 (530)
++....++
T Consensus 191 ~~~v~~fl 198 (220)
T 2b6c_A 191 PQWVEELM 198 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 168
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=60.88 E-value=11 Score=28.07 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=34.6
Q ss_pred HHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHhCCCCC
Q 009623 459 TQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 459 ~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~~~~~~~ 498 (530)
.+.+.+.+.-..+..|..| ++++|...|..++..|-..-+
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~v~ 87 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLD 87 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999886 999999999999999866443
No 169
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=58.62 E-value=1.2e+02 Score=33.87 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=76.0
Q ss_pred HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCch
Q 009623 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329 (530)
Q Consensus 250 ~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 329 (530)
.++.+.++.++.-+......+-...++. ....++..|+..+.+++..-...|+.+|..++..++..... -+-.+
T Consensus 407 ~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~----~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~--~a~~l 480 (1323)
T 3s4w_B 407 TLFHSQDQRIILFGSLLYKYAFKFFDTY----CQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRL--NAAFV 480 (1323)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHH--THHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhH--HHHHH
Confidence 4566788888777766655555443332 22355666777766677666777999999888765543211 11123
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009623 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 330 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
..++..+.+-....+|+ ...+|+.++...+..-...++..+.-.+-+.+.+.+.+.++..+.+-..+
T Consensus 481 ~giLD~l~~l~~~QiRk-lf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~ 547 (1323)
T 3s4w_B 481 KGILDYLENMSPQQIRK-IFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTM 547 (1323)
T ss_dssp HGGGGGGGGCCHHHHHH-HHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCHHHHHH-HHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHH
Confidence 34444444441334444 47777777752110000012222333344567777777776655444433
No 170
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=57.91 E-value=94 Score=26.95 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=80.0
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhcc-CChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHH-HHHHhHhhcCCchhhHHH
Q 009623 247 ALAHLIHSNDDEVLTDACWALSYLSD-GTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPA-LRTVGNIVTGDDMQTQCV 323 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a-~~~L~nl~~~~~~~~~~~ 323 (530)
.+..+..++..+.+.-++..+..... ..++ .++.+-.++. .+++.+.... ..+++.+....+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~----- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE----- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----
Confidence 34455555555666655555543321 1121 1222333332 3567666544 3556666544332
Q ss_pred hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009623 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 402 (530)
...+.+..++.++ +.-+++.|+..+..... .++. ..++.+...+.+++.-|++.+.|+|..+... +
T Consensus 131 ---~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~--------~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~ 197 (232)
T 3jxy_A 131 ---LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEE--------LLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-N 197 (232)
T ss_dssp ---GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHH--------HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ---HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-C
Confidence 2356788889988 88888887655422211 2222 1334555667788999999999999999987 5
Q ss_pred HHHHHHHHHc
Q 009623 403 HEQIKFLVIQ 412 (530)
Q Consensus 403 ~~~~~~l~~~ 412 (530)
++....+++.
T Consensus 198 p~~v~~fl~~ 207 (232)
T 3jxy_A 198 PDVVWEYVQN 207 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5655554443
No 171
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=56.05 E-value=33 Score=32.88 Aligned_cols=104 Identities=8% Similarity=0.051 Sum_probs=65.4
Q ss_pred hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-------CchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009623 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-------YKKSIKKEACWTVSNITAGNREQIQAV 366 (530)
Q Consensus 294 L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (530)
+....+..+..++++++|+........+.+........++..+... .+..++..++..+-|++.......
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--- 347 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 347 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---
Confidence 3345677889999999999875543333333333345555554321 145688888889999876311100
Q ss_pred HHhCcHHHHHHHHh---------cCchhHHHHHHHHHHHhhcC
Q 009623 367 IEANIIGPLVALLE---------NAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 367 ~~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~nl~~~ 400 (530)
.+..+...+.+++. ..+.+....++.||++++..
T Consensus 348 ~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 348 SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 01234456666665 24788999999999999964
No 172
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=55.46 E-value=20 Score=29.10 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=54.1
Q ss_pred cHHHHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhccCC---CChHHHHHHHHHHHHHHh
Q 009623 371 IIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP-LCDLLVC---PDPRIVTVCLEGLENILK 442 (530)
Q Consensus 371 ~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL~~---~~~~v~~~al~~l~~ll~ 442 (530)
.+..|.+-+. ++++.++..|+..|-.++.++.......+.+..++.. |+.++.. .+..|+..++..+...-.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4556777776 4789999999999999999887777777777778887 7777742 345788887777666544
No 173
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=52.49 E-value=32 Score=32.31 Aligned_cols=103 Identities=7% Similarity=0.035 Sum_probs=63.2
Q ss_pred CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----C---CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009623 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----N---YKKSIKKEACWTVSNITAGNREQIQAVI 367 (530)
Q Consensus 295 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (530)
....+..+..++++++|+........+.+........++..+.. . .+..++..++..+-|++....... .
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~ 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---S 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---S
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---c
Confidence 34567788999999999987554333333222223333443321 1 145688888889999886311100 0
Q ss_pred HhCcHHHHHHHHh---------cCchhHHHHHHHHHHHhhcC
Q 009623 368 EANIIGPLVALLE---------NAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 368 ~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~nl~~~ 400 (530)
+..+...+.+++. ..+.+....++.||++++..
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1234456666665 34788999999999999863
No 174
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=51.54 E-value=55 Score=28.99 Aligned_cols=104 Identities=10% Similarity=0.014 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-------CCchhHHHHHHHHhhhhccCC-C-CCChhh
Q 009623 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGK-P-QPPFDQ 240 (530)
Q Consensus 170 ~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-------~~~~~~~~~a~~~L~~L~~~~-~-~~~~~~ 240 (530)
+.++..+-.++++++|+..+....+..+........++..+.. ..+..++..+...+.|++... . ......
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 4567888999999999987776335555443234444544421 136677888888888887643 1 111112
Q ss_pred hhchHHHHHHhhc-----CCChhHHHHHHHHHHHhccC
Q 009623 241 VSPALPALAHLIH-----SNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 241 ~~~~l~~L~~ll~-----~~d~~v~~~a~~~l~~l~~~ 273 (530)
...++..+...+. ..|++....++.+++++...
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 2223333332211 23778888888999888753
No 175
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=49.19 E-value=95 Score=29.44 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=38.0
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhh
Q 009623 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIA 187 (530)
Q Consensus 114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nl~ 187 (530)
+...+-.|+.++.++| +.-|...-.+|..+-......+..+.+ .+-..+.+++... ...-....+.+++.+.
T Consensus 172 d~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsII 244 (392)
T 2jak_A 172 DQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII 244 (392)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 3445667778887777 777777666776665533444433322 2234455555431 1112233555666555
No 176
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=39.57 E-value=1.8e+02 Score=24.85 Aligned_cols=139 Identities=10% Similarity=-0.033 Sum_probs=87.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhh
Q 009623 119 PRFVEFLLREDYPQLQFEAAWALTNIASG-TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 119 ~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~ 196 (530)
..+..+..++. -+.+..|+.++...... .++. ++.+-.++.. ++..+.+..+.+++.+....+..
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--- 124 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--- 124 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG---
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH---
Confidence 34455666666 78888888888876532 2221 2222333433 67888887777777775433320
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009623 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
..+.+...+ .+++.-+++.++-++...... ......++.+..++.+++.-|+..+.|+|..++...++
T Consensus 125 -----~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~~------~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 125 -----LPTIFALFY-GAENFWNRRVALNLQLMLKEK------TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp -----HHHHHHHHT-TCSSHHHHHHHHHTTTTCGGG------CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred -----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 223455555 788888888887755322211 12234466666677788889999999999999988876
Q ss_pred HHHHHH
Q 009623 277 KIQAVI 282 (530)
Q Consensus 277 ~~~~~~ 282 (530)
....++
T Consensus 193 ~v~~fl 198 (220)
T 2b6c_A 193 WVEELM 198 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 177
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=33.75 E-value=1.6e+02 Score=23.32 Aligned_cols=76 Identities=9% Similarity=0.046 Sum_probs=56.3
Q ss_pred hhHHHhhcCchHHHHHhhcCCC-----chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHH
Q 009623 319 QTQCVIEYQALPCLLNLLSGNY-----KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAA 391 (530)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~ 391 (530)
....+++.|++..+-.+|..-. ...+|.....+|.++-- ....+.+.|+-..++.+-.++ .+..++.|-
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~ 128 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI----HKEHLVTSGVGKIVYFYSINPKESKEVRASAK 128 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC----CHHHhhcCCCCcchhhhhcCCccCHHHHHHHH
Confidence 4567889999999999997421 46799999999999842 245577788877777777666 477888887
Q ss_pred HHHHHhh
Q 009623 392 WAISNAT 398 (530)
Q Consensus 392 ~aL~nl~ 398 (530)
..+...+
T Consensus 129 ~Li~~Ws 135 (145)
T 2xpp_A 129 ALVQKWT 135 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 178
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=33.35 E-value=3.5e+02 Score=26.39 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=111.7
Q ss_pred hchHHHHHHhhcCCC-----hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CC-C----CchhHHHHHHHHh
Q 009623 242 SPALPALAHLIHSND-----DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MH-P----SPSVLIPALRTVG 310 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~-~----~~~~~~~a~~~L~ 310 (530)
..+++.|...+.+.. ......+.-.|...+..+..... .+++.+-++| .+ . ++.. .+..+.
T Consensus 30 ~~ll~~L~t~~e~~~~p~~in~Lie~~~LnL~~~t~~~~~~~~-----~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~ 101 (500)
T 3vld_A 30 ENLLTQLENELNEDNLPEDINTLLRKCSLNLVTVVSLPDMDVK-----PLLATIKRFLTSNVSYDSLNYDY---LLDVVD 101 (500)
T ss_dssp HHHHHHHHHHHHTSSCCTTHHHHHHHHHHHHHHSCSCCSCCCH-----HHHHHHHHHHHCSSCCTTCCHHH---HHHHHH
T ss_pred HHHHHHHHhhhccCCCCchhHHHHHHHhhcchhcccCCcccHH-----HHHHHHHHHHcCCccccccCHHH---HHHHHH
Confidence 444555555544332 34555666666666654431112 2445666676 33 1 2333 444444
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch--h-HH
Q 009623 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF--D-IK 387 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--~-v~ 387 (530)
.+....+ .+.+++.=-++.+..-|.++ .+.+...||.++. ... -...+...+++..|+.++-..+. . +-
T Consensus 102 ~il~~~~--Fd~VLevysve~i~~aL~S~-~~~l~~~~ckVI~---~s~--pk~lfa~t~iidiLL~lyFd~~t~i~~vv 173 (500)
T 3vld_A 102 KLVPMAD--FDDVLEVYSAEDLVKALRSE-IDPLKVAACRVIE---NSQ--PKGLFATSNIIDILLDILFDEKVENDKLI 173 (500)
T ss_dssp HHHHHSC--HHHHHHHSCHHHHHHHHTSS-CHHHHHHHHHHHH---TCS--SGGGGTTSSHHHHHHHHHTCTTCCCHHHH
T ss_pred HHHhcCC--HHHHHHhCCHHHHHHHHhcC-ChHHHHHHHHHhc---ccC--chhHhccChHHHHHHHHHcCCCCCcHHHH
Confidence 4443332 23455666688899999998 8999999999988 211 12335567899999999876643 3 77
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009623 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~ 444 (530)
..+-.++..++. +.-.++.+.+ ..++.|..+=+..++.+....++.+.-++...
T Consensus 174 n~IE~~~~~Lss--deLirrril~-nnl~lL~~vK~~~~~i~~sRLLdll~il~~~i 227 (500)
T 3vld_A 174 TAIEKALERLST--DELIRRRLFD-NNLPYLVSVKGRMETVSFVRLIDFLTIEFQFI 227 (500)
T ss_dssp HHHHHHHHHHTT--SHHHHHHHHT-TTHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCc--hHHHHHHHHH-HhHHHHHHHhcCCCceeHHHHHHHHHHHhccc
Confidence 777777777765 3223344443 56677777666778877777888777776654
No 179
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=32.91 E-value=88 Score=25.11 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=48.2
Q ss_pred ChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHH-HHHHhc---CCCHHHHHHHHH
Q 009623 414 CIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQT---HDNAEIYEKSVK 488 (530)
Q Consensus 414 ~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~---~~~~~v~~~a~~ 488 (530)
++..|..-|. ..++.++..||..|..+++.+... |...+....+++. |..+.. +...+|++++..
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~----------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~ 123 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS----------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILN 123 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH----------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH----------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 3555555555 357778888999888888766432 4444444444442 444432 345689999999
Q ss_pred HHHHhCCCCC
Q 009623 489 LLETYWLDDE 498 (530)
Q Consensus 489 il~~~~~~~~ 498 (530)
+|+.|-....
T Consensus 124 li~~Wa~~F~ 133 (152)
T 3rru_A 124 FIKTWSQGFP 133 (152)
T ss_dssp HHHHHHTCCS
T ss_pred HHHHHHHHhC
Confidence 9999866433
No 180
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=31.43 E-value=77 Score=29.00 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=33.5
Q ss_pred HHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009623 459 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 459 ~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
.+.|.+.+.-..+..|..|++++|...|..++..|-.
T Consensus 38 ~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~ 74 (309)
T 1pqv_S 38 EKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD 74 (309)
T ss_pred HHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999998854
No 181
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=30.68 E-value=2e+02 Score=24.18 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=65.8
Q ss_pred CChHHHHHhhCC------CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC--chhHHHHHHHHhhhhc
Q 009623 159 GAVPIFVKLLYS------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFC 230 (530)
Q Consensus 159 g~i~~L~~lL~~------~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~--~~~~~~~a~~~L~~L~ 230 (530)
..+|.+++++.+ .+.......+.....|.....-.-+. .-...+++++.++-... ...++..|+..+..+|
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lep-YlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDP-YLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGG-GHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 356666666532 35555555555555555433211111 11226777777764221 2279999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhc
Q 009623 231 RGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLS 271 (530)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~ 271 (530)
+.....-......+...+.+.+.++ ......-|++.|..+.
T Consensus 119 ~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 119 DTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 8764444444566777777777654 3445566777777664
No 182
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=28.67 E-value=62 Score=16.21 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=13.7
Q ss_pred CchHHhhhhhhHHHHHHHHhh
Q 009623 21 DADEGRRRREDNMVEIRKNKR 41 (530)
Q Consensus 21 ~~~~~~~~r~~~~~~lRk~~~ 41 (530)
+++|..+.-+..+..+||.++
T Consensus 2 nade~ykeled~qerlrk~rk 22 (26)
T 4g3b_A 2 NADEXYKELEDXQERLRKXRK 22 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 456666666677777776654
No 183
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=28.39 E-value=2.2e+02 Score=22.54 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=54.2
Q ss_pred HHHHHHhCcHHHHHHhhCC------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHH
Q 009623 278 IQAVIEAGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACW 350 (530)
Q Consensus 278 ~~~~~~~~~i~~L~~lL~~------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~ 350 (530)
...+++.|++..+-..|.. ++..++...+.+|.++-- ....+.++|+-..++.+-.+.. .+..|+.|-.
T Consensus 54 ~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~ 129 (145)
T 2xpp_A 54 QESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI----HKEHLVTSGVGKIVYFYSINPKESKEVRASAKA 129 (145)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC----CHHHhhcCCCCcchhhhhcCCccCHHHHHHHHH
Confidence 4567888998888888864 356799999999988842 2456677788777777776652 5677777777
Q ss_pred HHHHHh
Q 009623 351 TVSNIT 356 (530)
Q Consensus 351 ~L~nl~ 356 (530)
.+...+
T Consensus 130 Li~~Ws 135 (145)
T 2xpp_A 130 LVQKWT 135 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 184
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=26.92 E-value=86 Score=25.18 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=51.3
Q ss_pred cHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhccCCC---ChHHHHHHHHHHHHHHhh
Q 009623 371 IIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP-LCDLLVCP---DPRIVTVCLEGLENILKV 443 (530)
Q Consensus 371 ~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL~~~---~~~v~~~al~~l~~ll~~ 443 (530)
.+..|.+-+.. .++.++..|+..|-.++.++...+...+.+..++.. |+.++... +..|...++..+......
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 45566666764 478888889999999998887777666666666653 66666532 346888888877766543
No 185
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=26.26 E-value=2.9e+02 Score=23.17 Aligned_cols=128 Identities=14% Similarity=0.119 Sum_probs=78.9
Q ss_pred ChHHHHHhhc-----CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccC
Q 009623 202 GLVPLLAQLN-----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDG 273 (530)
Q Consensus 202 ~i~~Ll~ll~-----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~ 273 (530)
.+|.++..+. .-.+.......+.....|..++.-.-......++|.++.++-.. ...++..|+..++.++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 4555555542 23377788888888888888876556667788888877776432 237899999999998844
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhc
Q 009623 274 TNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337 (530)
Q Consensus 274 ~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 337 (530)
...... -+...++..+.+.+.++ +.....-|+..|..+.. ..+..-++|.+-.+.+
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~-------~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK-------NVVNTVIREHAEEYKR 178 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH-------HHHHTHHHHHHHHHHH
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH-------HHHHHhhhcCHHHHHH
Confidence 221111 22335566677766554 34455666776666653 2333334566655554
No 186
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=25.62 E-value=17 Score=33.68 Aligned_cols=44 Identities=27% Similarity=0.427 Sum_probs=27.7
Q ss_pred CchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcc
Q 009623 8 KADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG 52 (530)
Q Consensus 8 ~~~~~~~~~k~~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~ 52 (530)
+...|...||+...+.+..+|| +...+.-|++|.+.....|+..
T Consensus 28 a~HPR~sqyK~k~~~~~Q~~RR-~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQSERR-RRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCSCCHHH-HHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhhHHHHH-HHHHHHHHHHHHHHHHHhcccc
Confidence 4568999999854444444334 4555666788888898888864
No 187
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=24.85 E-value=2.8e+02 Score=22.60 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=59.0
Q ss_pred chhhHHHhhcCchHHHHHhhcCCC-----chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHH
Q 009623 317 DMQTQCVIEYQALPCLLNLLSGNY-----KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKE 389 (530)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~ 389 (530)
......+++.|++..+-.+|..-. ...+|.....+|.++-- ....+..+|+-..++-+..++ .+..+..
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvV~~l~k~~~et~~nkrl 141 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV----KTEHLKESGLGRVVIFYTKSKRVEAQLARL 141 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHSHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC----CHHHHhhCCCCceeeehhcCCcccHHHHHH
Confidence 344567889999999999996421 45799999999998842 234577788777777666665 5788888
Q ss_pred HHHHHHHhhc
Q 009623 390 AAWAISNATS 399 (530)
Q Consensus 390 a~~aL~nl~~ 399 (530)
|-..+...+.
T Consensus 142 a~~Li~~WsR 151 (170)
T 3nfq_A 142 AEKLIAEWTR 151 (170)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 188
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=24.80 E-value=70 Score=21.64 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCCCCCC
Q 009623 480 AEIYEKSVKLLETYWLDDED 499 (530)
Q Consensus 480 ~~v~~~a~~il~~~~~~~~~ 499 (530)
++|.+.+..-+++||+++++
T Consensus 50 ~~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 50 EDIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHhCccccC
Confidence 35678899999999987654
No 189
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.67 E-value=3.5e+02 Score=28.50 Aligned_cols=119 Identities=10% Similarity=0.050 Sum_probs=69.5
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC--CCchhHHHHHHHHhhh
Q 009623 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSN 228 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~--~~~~~~~~~a~~~L~~ 228 (530)
.++.+++ -+.|.+...+.+.+..+...+..+|.+||.-.|.+++.++. +++..+..-|.. -..+.-...++.++..
T Consensus 332 ~~~~fV~-~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~ 409 (799)
T 1vsy_4 332 CHEEIVE-IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTR 409 (799)
T ss_dssp HHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHH
Confidence 4444443 24566666778889999999999999999877755555432 234444444422 2445555566666666
Q ss_pred hccCCCC--CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009623 229 FCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 229 L~~~~~~--~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
+++.-.. .-......++..++..+..+|+.--..++..+..++
T Consensus 410 ~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 410 VIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp THHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 6543211 111233455555666666778766566666665554
No 190
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=22.27 E-value=3e+02 Score=21.87 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=46.3
Q ss_pred hHHHHhccCC--CChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC------CCHHHHHHH
Q 009623 415 IKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH------DNAEIYEKS 486 (530)
Q Consensus 415 l~~L~~lL~~--~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~v~~~a 486 (530)
+..|-.-|.+ .+...+..+|..|..|+..|+... +....+....+..|..++.. ....|+++|
T Consensus 61 m~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v---------v~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kA 131 (148)
T 1inz_A 61 MSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV---------SQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKA 131 (148)
T ss_dssp HHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH---------HHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH---------HHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHH
Confidence 4455554544 366788999999999999886532 23333334445666665432 345789999
Q ss_pred HHHHHHhCC
Q 009623 487 VKLLETYWL 495 (530)
Q Consensus 487 ~~il~~~~~ 495 (530)
..|++-.-+
T Consensus 132 k~l~~LL~D 140 (148)
T 1inz_A 132 KQLVALLRD 140 (148)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhCC
Confidence 999986644
No 191
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=21.69 E-value=3.8e+02 Score=22.94 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=84.8
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHH-HHHHhhhCCCchhhhh
Q 009623 120 RFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAV-WALGNIAGDSPRCRDL 196 (530)
Q Consensus 120 ~Lv~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~-~~L~nl~~~~~~~~~~ 196 (530)
.+-.+..++. .+.+..|+..+..... .+++. ++.+-.++.. ++..+....+ .+++.+....+.
T Consensus 65 ~~~~L~~~~~-~E~r~~ai~~l~~~~k~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~---- 130 (232)
T 3jxy_A 65 IIRELWDLPE-REFQAAALDIMQKYKKHINETH---------IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE---- 130 (232)
T ss_dssp HHHHHHTSSB-HHHHHHHHHHHHHTGGGCCGGG---------HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG----
T ss_pred HHHHHhcCcH-HHHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH----
Confidence 4455666655 7888888877764322 11222 2333334433 6777777653 455665543332
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009623 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
...+.+...+ .+.+.-+++.++-.+..... .......++.+..++.+++.-|+..+.|+|..++...++
T Consensus 131 ----~~~~~l~~W~-~s~~~w~rR~ai~~~l~~~~------~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~ 199 (232)
T 3jxy_A 131 ----LISAYIPKWI-ASDNIWLQRAAILFQLKYKQ------KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD 199 (232)
T ss_dssp ----GGGGTHHHHH-HSSCHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred ----HHHHHHHHHh-cCCchHHHHHHHHHHHHHHh------CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 1234455556 77788888888765532211 111234556666777788899999999999999988877
Q ss_pred HHHHHHHh
Q 009623 277 KIQAVIEA 284 (530)
Q Consensus 277 ~~~~~~~~ 284 (530)
....+++.
T Consensus 200 ~v~~fl~~ 207 (232)
T 3jxy_A 200 VVWEYVQN 207 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655553
Done!