BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009624
         (530 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C5C1U6|ATPA_BEUC1 ATP synthase subunit alpha OS=Beutenbergia cavernae (strain ATCC
           BAA-8 / DSM 12333 / NBRC 16432) GN=atpA PE=3 SV=1
          Length = 544

 Score = 34.7 bits (78), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 25/116 (21%)

Query: 375 EDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEI 434
           EDQ+  IW G     T  Y+ D +        D H     +LD+L+ H  V+       +
Sbjct: 443 EDQVAMIWSG-----TNGYLDDVET------ADIHRFESELLDHLRRHTSVLDDIASSGL 491

Query: 435 LTKEKTEEVEMTDMDE-------AMAQAVDIGEKDEEGEDSDLDADADDEEEKITR 483
           LT E TEE     ++        +  Q +  GE + +GED D+      E+E+I R
Sbjct: 492 LTDE-TEEALRNGVESFRRTFAGSDGQIIGGGEPESDGEDVDV------EQEQIVR 540


>sp|O00220|TR10A_HUMAN Tumor necrosis factor receptor superfamily member 10A OS=Homo
           sapiens GN=TNFRSF10A PE=1 SV=3
          Length = 468

 Score = 32.7 bits (73), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 88  YFDSASGQLEPASGARASIPGEEYWPEGTASRVRAARAPEPTGESTGSPSYGKH 141
            + S++G++EP  G R ++P       G ++R RA RAP P      SP    H
Sbjct: 37  VWGSSAGRIEPRGGGRGALP-TSMGQHGPSARARAGRAPGPRPAREASPRLRVH 89


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.130    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,847,632
Number of Sequences: 539616
Number of extensions: 9823910
Number of successful extensions: 47275
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 453
Number of HSP's that attempted gapping in prelim test: 43626
Number of HSP's gapped (non-prelim): 3010
length of query: 530
length of database: 191,569,459
effective HSP length: 122
effective length of query: 408
effective length of database: 125,736,307
effective search space: 51300413256
effective search space used: 51300413256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)