Query 009624
Match_columns 530
No_of_seqs 14 out of 16
Neff 2.0
Searched_HMMs 46136
Date Thu Mar 28 15:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11332 DUF3134: Protein of u 86.5 0.27 5.8E-06 41.3 0.6 20 413-432 22-41 (73)
2 PF00549 Ligase_CoA: CoA-ligas 68.2 2.2 4.8E-05 39.3 0.8 13 208-220 49-61 (153)
3 PRK06091 membrane protein FdrA 55.5 4.2 9.2E-05 44.6 0.3 13 208-220 385-397 (555)
4 PF13410 GST_C_2: Glutathione 50.2 13 0.00029 27.5 2.1 26 257-284 17-42 (69)
5 PF10446 DUF2457: Protein of u 49.6 9.6 0.00021 41.3 1.8 14 429-442 35-48 (458)
6 COG0754 Gsp Glutathionylspermi 44.6 6.1 0.00013 41.9 -0.6 57 226-283 67-131 (387)
7 PRK15364 pathogenicity island 41.6 24 0.00051 34.8 2.9 52 413-464 101-152 (196)
8 cd03007 PDI_a_ERp29_N PDIa fam 39.8 20 0.00043 31.8 1.9 45 377-423 69-116 (116)
9 PF07308 DUF1456: Protein of u 39.8 28 0.0006 28.6 2.6 30 412-441 16-45 (68)
10 cd01055 Nonheme_Ferritin nonhe 37.3 27 0.00059 30.2 2.4 38 311-352 25-62 (156)
11 PF12368 DUF3650: Protein of u 34.7 34 0.00074 24.8 2.1 19 417-437 9-27 (28)
12 PHA02608 67 prohead core prote 33.5 42 0.0009 29.3 2.8 44 416-461 5-49 (80)
13 PF10281 Ish1: Putative stress 33.4 50 0.0011 23.8 2.8 24 413-436 7-35 (38)
14 COG2008 GLY1 Threonine aldolas 32.0 16 0.00035 38.1 0.2 51 391-441 108-162 (342)
15 PF13412 HTH_24: Winged helix- 30.5 54 0.0012 23.6 2.6 24 414-438 7-30 (48)
16 COG2342 Predicted extracellula 30.2 31 0.00066 35.9 1.8 102 259-369 66-202 (300)
17 TIGR03034 conserved hypothetic 30.0 67 0.0015 33.1 4.1 60 373-441 28-90 (274)
18 PF11116 DUF2624: Protein of u 29.2 48 0.001 28.9 2.5 29 412-440 17-45 (85)
19 KOG4277 Uncharacterized conser 27.5 24 0.00053 37.6 0.6 32 386-421 99-130 (468)
20 PF04695 Pex14_N: Peroxisomal 26.4 53 0.0012 29.4 2.4 48 373-439 1-48 (136)
21 cd08785 CARD_CARD9-like Caspas 26.4 56 0.0012 27.9 2.4 23 414-437 20-42 (86)
22 PF09309 FCP1_C: FCP1, C-termi 25.6 23 0.0005 36.1 0.0 60 89-149 59-128 (263)
23 smart00862 Trans_reg_C Transcr 25.0 74 0.0016 23.9 2.6 25 414-438 12-37 (78)
24 cd08330 CARD_ASC_NALP1 Caspase 24.4 67 0.0015 26.7 2.5 26 412-438 17-42 (82)
25 PLN02397 aspartate transaminas 23.4 73 0.0016 32.3 3.0 53 378-440 158-225 (423)
26 PRK13475 ribulose bisphosphate 23.2 61 0.0013 34.9 2.5 36 241-276 198-233 (443)
27 cd03155 CD151_like_LEL Tetrasp 22.3 1E+02 0.0022 25.0 3.1 40 310-349 2-41 (110)
28 PF13867 SAP30_Sin3_bdg: Sin3 22.1 83 0.0018 24.5 2.5 20 325-344 28-47 (53)
29 PRK09399 sspP acid-soluble spo 22.1 47 0.001 26.7 1.1 13 91-103 18-30 (48)
30 PF06524 NOA36: NOA36 protein; 21.3 45 0.00098 34.7 1.1 15 379-393 203-217 (314)
31 cd00299 GST_C_family Glutathio 21.3 92 0.002 23.3 2.5 25 259-285 49-73 (100)
32 PF08461 HTH_12: Ribonuclease 21.0 99 0.0021 24.8 2.7 25 414-438 2-26 (66)
33 PF15234 LAT: Linker for activ 20.6 2.4E+02 0.0052 28.5 5.8 41 102-142 57-99 (230)
34 PF12339 DNAJ_related: DNA-J r 20.3 70 0.0015 29.3 2.0 74 258-346 25-127 (132)
35 KOG4463 Uncharacterized conser 20.2 85 0.0018 32.9 2.7 47 82-139 230-285 (323)
36 PRK06253 O-phosphoseryl-tRNA s 20.1 58 0.0013 36.1 1.7 68 331-409 448-522 (529)
No 1
>PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=86.49 E-value=0.27 Score=41.31 Aligned_cols=20 Identities=35% Similarity=0.785 Sum_probs=17.8
Q ss_pred hhhHHHHHHhCccccHHHHH
Q 009624 413 PNMLDYLKEHGKVISREELE 432 (530)
Q Consensus 413 P~~v~~L~e~G~~IsrEel~ 432 (530)
+.||+.|...|+||.|+..+
T Consensus 22 ~SlLdWLe~tGRLi~rd~~e 41 (73)
T PF11332_consen 22 SSLLDWLESTGRLIARDPQE 41 (73)
T ss_pred cHHHHHHHHcCCccccCccc
Confidence 67999999999999997665
No 2
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=68.19 E-value=2.2 Score=39.30 Aligned_cols=13 Identities=69% Similarity=1.372 Sum_probs=7.6
Q ss_pred cCCCCCCCCcccC
Q 009624 208 LGRPHPFIDPKVR 220 (530)
Q Consensus 208 ~G~pHpfidp~~~ 220 (530)
-|||||.|||...
T Consensus 49 ~GrphPmid~~~~ 61 (153)
T PF00549_consen 49 QGRPHPMIDPSTR 61 (153)
T ss_dssp TTS--TTT-SSHH
T ss_pred ccCcCCCcCHHHH
Confidence 4999999997643
No 3
>PRK06091 membrane protein FdrA; Validated
Probab=55.46 E-value=4.2 Score=44.57 Aligned_cols=13 Identities=69% Similarity=1.505 Sum_probs=11.6
Q ss_pred cCCCCCCCCcccC
Q 009624 208 LGRPHPFIDPKVR 220 (530)
Q Consensus 208 ~G~pHpfidp~~~ 220 (530)
-|||||.|||..+
T Consensus 385 ~GrpHPMIDp~~R 397 (555)
T PRK06091 385 VGRPHPMIDPTLR 397 (555)
T ss_pred CCCCCCCcChHHH
Confidence 5999999999875
No 4
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=50.22 E-value=13 Score=27.48 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=18.5
Q ss_pred HHHHHHHhhcceeeecCCCchhHHHHHH
Q 009624 257 VFLKAMAETGQIKLYGEHPTLTETALYR 284 (530)
Q Consensus 257 Vf~kAMAetGQIkL~Ge~PT~tEaaL~r 284 (530)
++.+.|+..+ -|+|++||++.++|+=
T Consensus 17 ~le~~L~~~~--fl~G~~~s~aD~~l~~ 42 (69)
T PF13410_consen 17 ALEDHLADGP--FLFGDRPSLADIALAP 42 (69)
T ss_dssp HHHHHHTTSS--BTTBSS--HHHHHHHH
T ss_pred HHHHHHhhCC--CCCCCCCCHHHHHHHH
Confidence 3455666666 8999999999999884
No 5
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=49.65 E-value=9.6 Score=41.26 Aligned_cols=14 Identities=36% Similarity=0.318 Sum_probs=6.9
Q ss_pred HHHHHHHhhhhhhh
Q 009624 429 EELEEILTKEKTEE 442 (530)
Q Consensus 429 Eel~~iL~kEk~ee 442 (530)
|-.-..|.+|-+|+
T Consensus 35 E~~IRkLgeEaEEE 48 (458)
T PF10446_consen 35 ENAIRKLGEEAEEE 48 (458)
T ss_pred HHHHhhhhHHHHHH
Confidence 33344566655554
No 6
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=44.56 E-value=6.1 Score=41.95 Aligned_cols=57 Identities=37% Similarity=0.595 Sum_probs=42.8
Q ss_pred CCCcccccccccCCChhhhhH----hhhcCCChHHHHHHHHHhhcceeee---cCCCc-hhHHHHH
Q 009624 226 PLSSEELWWNWRKSDKEQWSR----WQRRRPDVETVFLKAMAETGQIKLY---GEHPT-LTETALY 283 (530)
Q Consensus 226 ~l~seELWWNwrkpekE~WSr----WQrR~pDvdTVf~kAMAetGQIkL~---Ge~PT-~tEaaL~ 283 (530)
-+-+++|-=+.+=| +..|.+ |++|.|-.=+=|-=||-..|+|||+ +|.|| ++|||+.
T Consensus 67 ~i~~d~~l~~l~Ip-~~~w~~i~~SW~~~~~sLygRfDl~~dg~g~iKLlEyNADTPTsl~Eaav~ 131 (387)
T COG0754 67 VVKSDELLTRLAIP-KDYWDVIRNSWRRRDPSLYGRFDLAYDGDGPIKLLEYNADTPTSLYETAVF 131 (387)
T ss_pred HHcchhhHhhcCCC-HHHHHHHHHHHhccCcceeeeeEEEecCCCCeEEEEecCCCchHHHHHHHH
Confidence 34455553333333 566764 9999999999999999999999998 79998 6788764
No 7
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=41.62 E-value=24 Score=34.81 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=34.1
Q ss_pred hhhHHHHHHhCccccHHHHHHHHhhhhhhhccccchhHHHhhhhccCCCCCC
Q 009624 413 PNMLDYLKEHGKVISREELEEILTKEKTEEVEMTDMDEAMAQAVDIGEKDEE 464 (530)
Q Consensus 413 P~~v~~L~e~G~~IsrEel~~iL~kEk~ee~~~~d~ddaMa~AvDIGendde 464 (530)
+++++|+++|||.|+---+..-|++......+-.-.=.|+..|+|.--|-..
T Consensus 101 ddVI~YmrdNgI~VdG~sid~Yl~k~~~~~~LdkG~LqAVKAALd~~snr~T 152 (196)
T PRK15364 101 EDVIKYMRDNGILIDGMTIDDYMAKYGDHGKLDKGGLQAIKAALDNDANRNT 152 (196)
T ss_pred HHHHHHHHHcCceecccchHHHHhccCCccCCChhhHHHHHHHHHhhccccc
Confidence 4677889999999998888888866422212222223577777777666544
No 8
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=39.83 E-value=20 Score=31.83 Aligned_cols=45 Identities=20% Similarity=0.441 Sum_probs=30.7
Q ss_pred HHhhhhcCC-CCccccccccCCc--cccccCCCCCCCCChhhHHHHHHhC
Q 009624 377 QIKQIWGGD-PVYPTVNYIQDPD--EVIDYRGPDFHEPTPNMLDYLKEHG 423 (530)
Q Consensus 377 qIKQiWGGD-PVYPTiNYiQDPd--eViDYRgp~fHEPTP~~v~~L~e~G 423 (530)
.+-+=.|=. =-||||.+..+-+ +.++|.|++. =.-+||.|++++|
T Consensus 69 ~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r--~~~~lv~~v~~~~ 116 (116)
T cd03007 69 ELGERYKLDKESYPVIYLFHGGDFENPVPYSGADV--TVDALQRFLKGNT 116 (116)
T ss_pred HHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcc--cHHHHHHHHHhcC
Confidence 344444432 2699998888643 7899999762 2456889998875
No 9
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=39.76 E-value=28 Score=28.64 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=26.9
Q ss_pred ChhhHHHHHHhCccccHHHHHHHHhhhhhh
Q 009624 412 TPNMLDYLKEHGKVISREELEEILTKEKTE 441 (530)
Q Consensus 412 TP~~v~~L~e~G~~IsrEel~~iL~kEk~e 441 (530)
.++|++.++--|.-||++||.++|.||..+
T Consensus 16 d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 16 DDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred hHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 468999999999999999999999997544
No 10
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=37.25 E-value=27 Score=30.19 Aligned_cols=38 Identities=13% Similarity=0.385 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcccHHHHHHHHHhhcchhhHHHHHHhhhcchh
Q 009624 311 YSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQTDR 352 (530)
Q Consensus 311 YsEWVkawKkDTSreAiqkhfeeTGEde~~QLi~Mf~hQT~r 352 (530)
|+.|...| ....+.++|...-.+|-.--..++.+.+.|
T Consensus 25 ~a~~~~~~----~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~ 62 (156)
T cd01055 25 MAAWFDSK----GLDGFANFFRVQAQEEREHAMKFFDYLNDR 62 (156)
T ss_pred HHHHHhhc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44555554 677899999999988887777777666554
No 11
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=34.68 E-value=34 Score=24.84 Aligned_cols=19 Identities=53% Similarity=0.851 Sum_probs=16.2
Q ss_pred HHHHHhCccccHHHHHHHHhh
Q 009624 417 DYLKEHGKVISREELEEILTK 437 (530)
Q Consensus 417 ~~L~e~G~~IsrEel~~iL~k 437 (530)
-|.++|| ||.||.+++|+.
T Consensus 9 rYV~eh~--ls~ee~~~RL~~ 27 (28)
T PF12368_consen 9 RYVKEHG--LSEEEVAERLAA 27 (28)
T ss_pred hhHHhcC--CCHHHHHHHHHc
Confidence 4889998 699999999974
No 12
>PHA02608 67 prohead core protein; Provisional
Probab=33.49 E-value=42 Score=29.33 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=30.5
Q ss_pred HHHHHHhCccccHHHHHHHHhhhhhhhccccchhHHHhhhhcc-CCC
Q 009624 416 LDYLKEHGKVISREELEEILTKEKTEEVEMTDMDEAMAQAVDI-GEK 461 (530)
Q Consensus 416 v~~L~e~G~~IsrEel~~iL~kEk~ee~~~~d~ddaMa~AvDI-Gen 461 (530)
+.-.|-.-.+-.|.+|..+++--.. -.+....-++|.+|=| ||.
T Consensus 5 IeAIKS~DLV~akK~F~~~Me~rt~--~li~e~k~eIA~sv~iEGEe 49 (80)
T PHA02608 5 IEAIKSGDLVEAKKEFASIMEARTE--ALIEEEKVEIARSVMIEGEE 49 (80)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcCCC
Confidence 4455666677788999998865432 3455667889999988 443
No 13
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=33.38 E-value=50 Score=23.78 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=18.6
Q ss_pred hhhHHHHHHhCcccc-----HHHHHHHHh
Q 009624 413 PNMLDYLKEHGKVIS-----REELEEILT 436 (530)
Q Consensus 413 P~~v~~L~e~G~~Is-----rEel~~iL~ 436 (530)
-++-.+|++|||..+ |++|-+.+.
T Consensus 7 ~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSAKTRDELLKLAK 35 (38)
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 467899999999874 888766553
No 14
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=32.05 E-value=16 Score=38.14 Aligned_cols=51 Identities=29% Similarity=0.322 Sum_probs=38.8
Q ss_pred cccccCCccccc-cCCCC-CCCCChhhHHHHHHh--CccccHHHHHHHHhhhhhh
Q 009624 391 VNYIQDPDEVID-YRGPD-FHEPTPNMLDYLKEH--GKVISREELEEILTKEKTE 441 (530)
Q Consensus 391 iNYiQDPdeViD-YRgp~-fHEPTP~~v~~L~e~--G~~IsrEel~~iL~kEk~e 441 (530)
.|=-=+|+.|.. +|-+| -|.|||-|+-..+-+ |.++|.+||++|-+=-|.-
T Consensus 108 ~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~ 162 (342)
T COG2008 108 ADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEH 162 (342)
T ss_pred CCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHh
Confidence 344456777777 66666 788999999888877 9999999999996544443
No 15
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=30.54 E-value=54 Score=23.58 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=19.1
Q ss_pred hhHHHHHHhCccccHHHHHHHHhhh
Q 009624 414 NMLDYLKEHGKVISREELEEILTKE 438 (530)
Q Consensus 414 ~~v~~L~e~G~~IsrEel~~iL~kE 438 (530)
.||.+|.++|. +|+.||.+.+.--
T Consensus 7 ~Il~~l~~~~~-~t~~ela~~~~is 30 (48)
T PF13412_consen 7 KILNYLRENPR-ITQKELAEKLGIS 30 (48)
T ss_dssp HHHHHHHHCTT-S-HHHHHHHHTS-
T ss_pred HHHHHHHHcCC-CCHHHHHHHhCCC
Confidence 58899999998 9999999887643
No 16
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=30.19 E-value=31 Score=35.88 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=68.4
Q ss_pred HHHHHhhcceeeecCCCchhHHHHHHH---------HhhhhHH-------------------HHhHHHHHHHHhhcCchh
Q 009624 259 LKAMAETGQIKLYGEHPTLTETALYRA---------RRHLFKE-------------------ERLKAEQERLERIGPIAY 310 (530)
Q Consensus 259 ~kAMAetGQIkL~Ge~PT~tEaaL~rA---------Rrhl~kE-------------------ERl~aEqeRle~iGpiAY 310 (530)
++.|++.| +|.. --.++.||.=||- |+.++-+ .=+++.+.||.++|=-+|
T Consensus 66 lr~~~~gg-~~pI-AYlsIg~ae~yR~Ywd~~w~~~~p~wLg~edP~W~Gny~VkYW~~eWkdii~~~l~rL~d~GfdGv 143 (300)
T COG2342 66 LRTKADGG-VKPI-AYLSIGEAESYRFYWDKYWLTGRPDWLGEEDPEWPGNYAVKYWEPEWKDIIRSYLDRLIDQGFDGV 143 (300)
T ss_pred HHHHhcCC-eeEE-EEEechhhhhhhhHhhhhhhcCCcccccCCCCCCCCCceeeccCHHHHHHHHHHHHHHHHccCceE
Confidence 56777877 4432 2356777777765 2222221 135689999999999999
Q ss_pred HHHHHHHHhhcccHHHHHHHHHhhcchhhHHHH-------HHhhhcchhHHHHHhccceeeecCcc
Q 009624 311 YSEWVKAWKRDTSREAIQKHYEETGEDENTQLI-------EMFCHQTDREYRIMMGNDIRIKRDPL 369 (530)
Q Consensus 311 YsEWVkawKkDTSreAiqkhfeeTGEde~~QLi-------~Mf~hQT~rEYRiMmGTDvRI~RDPL 369 (530)
|-.||.+| .-++.|-++||..-....+ +-.+.++.- +||..-.=-+|.+.++
T Consensus 144 yLD~VD~y------~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~-~~Vi~qng~~l~d~~~ 202 (300)
T COG2342 144 YLDVVDAY------WYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPL-FRVIPQNGAELFDADG 202 (300)
T ss_pred EEeeechH------HHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCc-EEEEecccHhhcCccc
Confidence 99999999 6788888888877655444 333445555 7777666666666663
No 17
>TIGR03034 conserved hypothetical protein. Members of this protein family have been found in several species of gammaproteobacteria, including Yersinia pestis and Y. pseudotuberculosis, Xylella fastidiosa, and Escherichia coli UTI89. As many as five members can be found in a single genome. The function is unknown.
Probab=29.97 E-value=67 Score=33.13 Aligned_cols=60 Identities=28% Similarity=0.396 Sum_probs=49.1
Q ss_pred cCHHHHhhhhcCCCCccccccccCCccccccCCCCCCCCChhhHHH--HHHhC-ccccHHHHHHHHhhhhhh
Q 009624 373 LREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDY--LKEHG-KVISREELEEILTKEKTE 441 (530)
Q Consensus 373 MredqIKQiWGGDPVYPTiNYiQDPdeViDYRgp~fHEPTP~~v~~--L~e~G-~~IsrEel~~iL~kEk~e 441 (530)
|.|+|+|+=.|=.=|=.+|| =|++..+|.|+|+-.++ ...+. ..|||+|...||=.|.+.
T Consensus 28 lte~ql~~~fgL~dvS~~vd---------Pyt~~~~~~~~~~~~~~~~~~~~~~~kis~~ec~~ILFdEfr~ 90 (274)
T TIGR03034 28 LTEQQLKSDFGLSDISAKVD---------PYTLIKYHFPGPGSINVAFFAKSSSKKISQRECVRILFNEFRH 90 (274)
T ss_pred cCHHHHHHhcCCcccccccC---------CccccccccCCccccchhhhccCccccccHHHHHHHHHHHHHH
Confidence 78999999999877777776 48999999999987653 44433 699999999999988776
No 18
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=29.19 E-value=48 Score=28.92 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=24.4
Q ss_pred ChhhHHHHHHhCccccHHHHHHHHhhhhh
Q 009624 412 TPNMLDYLKEHGKVISREELEEILTKEKT 440 (530)
Q Consensus 412 TP~~v~~L~e~G~~IsrEel~~iL~kEk~ 440 (530)
+.+.+.|-+++|+-||+++.++|++==+.
T Consensus 17 ~~eLlkyskqy~i~it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 17 AKELLKYSKQYNISITKKQAEQIANILRG 45 (85)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 35788999999999999999999875443
No 19
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=27.46 E-value=24 Score=37.55 Aligned_cols=32 Identities=28% Similarity=0.685 Sum_probs=22.4
Q ss_pred CCccccccccCCccccccCCCCCCCCChhhHHHHHH
Q 009624 386 PVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKE 421 (530)
Q Consensus 386 PVYPTiNYiQDPdeViDYRgp~fHEPTP~~v~~L~e 421 (530)
--||||-+... |++|||||+-=. -.++.+-+.
T Consensus 99 qGYPTIk~~kg-d~a~dYRG~R~K---d~iieFAhR 130 (468)
T KOG4277|consen 99 QGYPTIKFFKG-DHAIDYRGGREK---DAIIEFAHR 130 (468)
T ss_pred CCCceEEEecC-CeeeecCCCccH---HHHHHHHHh
Confidence 34999998764 899999998643 245555443
No 20
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=26.41 E-value=53 Score=29.39 Aligned_cols=48 Identities=33% Similarity=0.662 Sum_probs=33.9
Q ss_pred cCHHHHhhhhcCCCCccccccccCCccccccCCCCCCCCChhhHHHHHHhCccccHHHHHHHHhhhh
Q 009624 373 LREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTKEK 439 (530)
Q Consensus 373 MredqIKQiWGGDPVYPTiNYiQDPdeViDYRgp~fHEPTP~~v~~L~e~G~~IsrEel~~iL~kEk 439 (530)
||||+|.|- +++.|||.- -..|+-.=+.||+.+| +|-+|+++.|.+-.
T Consensus 1 ~Re~li~~A---------~~FL~~p~V--------~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~ 48 (136)
T PF04695_consen 1 MREDLIEQA---------VKFLQDPKV--------RNSPLEKKIAFLESKG--LTEEEIDEALGRAG 48 (136)
T ss_dssp -HHHHHHHH---------HHHHCTTTC--------CCS-HHHHHHHHHHCT----HHHHHHHHHHHT
T ss_pred CHHHHHHHH---------HHHhCCccc--------ccCCHHHHHHHHHcCC--CCHHHHHHHHHhcC
Confidence 577777763 778888862 2467778899999998 58999988887753
No 21
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=26.40 E-value=56 Score=27.91 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.1
Q ss_pred hhHHHHHHhCccccHHHHHHHHhh
Q 009624 414 NMLDYLKEHGKVISREELEEILTK 437 (530)
Q Consensus 414 ~~v~~L~e~G~~IsrEel~~iL~k 437 (530)
.+++||...| ++|.++.++|+++
T Consensus 20 ~l~d~L~q~~-VLt~~d~EeI~~~ 42 (86)
T cd08785 20 RLTPYLRQCK-VLDEQDEEEVLSS 42 (86)
T ss_pred HHHHHHHhcC-CCCHHHHHHHhCC
Confidence 4899999999 8999999999986
No 22
>PF09309 FCP1_C: FCP1, C-terminal; InterPro: IPR015388 The C-terminal domain of FCP-1 is required for interaction with the carboxy terminal domain of RAP74. Interaction relies extensively on van der Waals contacts between hydrophobic residues situated within alpha-helices in both domains []. ; PDB: 1ONV_B 1J2X_B.
Probab=25.65 E-value=23 Score=36.13 Aligned_cols=60 Identities=33% Similarity=0.506 Sum_probs=0.0
Q ss_pred ccCCCCCcccCCCCCCCCCCCCCCC-------cchhhhhhhccCCC--CCCCCCCCCCCCCCCC-cccccc
Q 009624 89 FDSASGQLEPASGARASIPGEEYWP-------EGTASRVRAARAPE--PTGESTGSPSYGKHPG-SRRKKY 149 (530)
Q Consensus 89 ~DstsGqlePasGaRAsiP~~eyWp-------egta~rVRaarAp~--P~ges~g~ps~G~~pg-SRRk~y 149 (530)
.|++||+|- -.|+.++-|..-+=| .+-.+-.|+.+-.. .-++..+.-.=|.+|| ||||+-
T Consensus 59 YD~~TGKLI-Rkg~q~~~p~~~~~p~~~~~~~~~e~s~~R~~~~~q~~~~~e~~~~s~d~EqpgpsrRKRq 128 (263)
T PF09309_consen 59 YDPVTGKLI-RKGPQGPRPPPIQPPSPSSLPVHGEHSSFRAVQPHQQQMFGEELPSSQDGEQPGPSRRKRQ 128 (263)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ecCccccee-eccCCCCCCCccccccccccccccCCCcccccCCcccccCCccCCCCCCCCCCCccccccC
Confidence 488999985 356666666552222 22234456555443 3467777778899999 666553
No 23
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=24.97 E-value=74 Score=23.89 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=21.0
Q ss_pred hhHHHHHHh-CccccHHHHHHHHhhh
Q 009624 414 NMLDYLKEH-GKVISREELEEILTKE 438 (530)
Q Consensus 414 ~~v~~L~e~-G~~IsrEel~~iL~kE 438 (530)
.++.+|..| |.++|+++|.+.|=..
T Consensus 12 ~lL~~L~~~~~~~vs~~~l~~~lw~~ 37 (78)
T smart00862 12 RLLELLLRNPGRVVSREELLEAVWGD 37 (78)
T ss_pred HHHHHHHhCCCCccCHHHHHHHHcCC
Confidence 478888887 8999999999988654
No 24
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=24.39 E-value=67 Score=26.67 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.5
Q ss_pred ChhhHHHHHHhCccccHHHHHHHHhhh
Q 009624 412 TPNMLDYLKEHGKVISREELEEILTKE 438 (530)
Q Consensus 412 TP~~v~~L~e~G~~IsrEel~~iL~kE 438 (530)
.-.|++.|.+.| +||.++.+.|.++.
T Consensus 17 v~~ilD~L~~~~-Vit~e~~~~I~a~~ 42 (82)
T cd08330 17 VDPILDKLHGKK-VITQEQYSEVRAEK 42 (82)
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHcCC
Confidence 346899999999 89999999999865
No 25
>PLN02397 aspartate transaminase
Probab=23.42 E-value=73 Score=32.27 Aligned_cols=53 Identities=23% Similarity=0.013 Sum_probs=33.9
Q ss_pred HhhhhcCCCCc-cc---cccccCCccc----ccc-------CCCCCCCCChhhHHHHHHhCccccHHHHHHHHhhhhh
Q 009624 378 IKQIWGGDPVY-PT---VNYIQDPDEV----IDY-------RGPDFHEPTPNMLDYLKEHGKVISREELEEILTKEKT 440 (530)
Q Consensus 378 IKQiWGGDPVY-PT---iNYiQDPdeV----iDY-------Rgp~fHEPTP~~v~~L~e~G~~IsrEel~~iL~kEk~ 440 (530)
+-+..|+.+|+ |. -||.-|++.+ ... =.+++|.|| |.++|++++++|++--+.
T Consensus 158 ~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPT----------G~v~s~e~l~~i~~~a~~ 225 (423)
T PLN02397 158 IFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPT----------GVDPTPEQWEQISDLIKS 225 (423)
T ss_pred HHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCC----------CCCCCHHHHHHHHHHHHh
Confidence 34466777764 22 2455566632 211 126789998 899999999999875443
No 26
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=23.18 E-value=61 Score=34.91 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=32.8
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT 276 (530)
..+|++|..|-+-|--++.+|.+|||+.|+|==..|
T Consensus 198 ~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~y~~NiT 233 (443)
T PRK13475 198 NQVFAPLKKTVPLVADAMKRAQDETGEAKLFSANIT 233 (443)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCceeEeccCC
Confidence 356999999999999999999999999999987777
No 27
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=22.27 E-value=1e+02 Score=24.98 Aligned_cols=40 Identities=15% Similarity=0.347 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhcccHHHHHHHHHhhcchhhHHHHHHhhhc
Q 009624 310 YYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQ 349 (530)
Q Consensus 310 YYsEWVkawKkDTSreAiqkhfeeTGEde~~QLi~Mf~hQ 349 (530)
.|...|+.+-+++-+.+|++++...+....+.+++.+|.+
T Consensus 2 v~~~~~~~~i~~~l~~~i~~~y~~~~~~~~~~~~d~iQ~~ 41 (110)
T cd03155 2 TYYQQLEDELKESLKRTMQENYGQSGEEALTLTVDELQQE 41 (110)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence 4778899999999999999888765556678888888865
No 28
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=22.15 E-value=83 Score=24.50 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=12.5
Q ss_pred HHHHHHHHhhcchhhHHHHH
Q 009624 325 EAIQKHYEETGEDENTQLIE 344 (530)
Q Consensus 325 eAiqkhfeeTGEde~~QLi~ 344 (530)
.||++||...+=+|++-|..
T Consensus 28 ~~V~kHF~s~~v~E~evI~~ 47 (53)
T PF13867_consen 28 NAVRKHFNSQPVDENEVIAN 47 (53)
T ss_dssp HHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHH
Confidence 58999999999888865443
No 29
>PRK09399 sspP acid-soluble spore protein P; Provisional
Probab=22.13 E-value=47 Score=26.71 Aligned_cols=13 Identities=46% Similarity=0.767 Sum_probs=10.6
Q ss_pred CCCCCcccCCCCC
Q 009624 91 SASGQLEPASGAR 103 (530)
Q Consensus 91 stsGqlePasGaR 103 (530)
-++||+||-||..
T Consensus 18 ~~~gQPEPLSGSk 30 (48)
T PRK09399 18 ENPGQPEPLSGSK 30 (48)
T ss_pred CCCCCCCCCCcch
Confidence 3689999999963
No 30
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=21.33 E-value=45 Score=34.71 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=6.1
Q ss_pred hhhhcCCCCcccccc
Q 009624 379 KQIWGGDPVYPTVNY 393 (530)
Q Consensus 379 KQiWGGDPVYPTiNY 393 (530)
|+.=|.-|--|--+|
T Consensus 203 ky~k~k~~PCPKCg~ 217 (314)
T PF06524_consen 203 KYEKGKPIPCPKCGY 217 (314)
T ss_pred ccccCCCCCCCCCCC
Confidence 333344444444444
No 31
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=21.30 E-value=92 Score=23.25 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=18.0
Q ss_pred HHHHHhhcceeeecCCCchhHHHHHHH
Q 009624 259 LKAMAETGQIKLYGEHPTLTETALYRA 285 (530)
Q Consensus 259 ~kAMAetGQIkL~Ge~PT~tEaaL~rA 285 (530)
.+-+++.+. +.|++||++..+|+-.
T Consensus 49 ~~~L~~~~~--~~g~~~t~aDi~~~~~ 73 (100)
T cd00299 49 EKLLAGRPY--LAGDRFSLADIALAPV 73 (100)
T ss_pred HHHHccCCC--CCCCCcCHHHHHHHHH
Confidence 344444443 7999999999998754
No 32
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=21.03 E-value=99 Score=24.81 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.7
Q ss_pred hhHHHHHHhCccccHHHHHHHHhhh
Q 009624 414 NMLDYLKEHGKVISREELEEILTKE 438 (530)
Q Consensus 414 ~~v~~L~e~G~~IsrEel~~iL~kE 438 (530)
.||.+|.+++..+++.+|.+-|...
T Consensus 2 ~IL~~L~~~~~P~g~~~l~~~L~~~ 26 (66)
T PF08461_consen 2 FILRILAESDKPLGRKQLAEELKLR 26 (66)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhc
Confidence 4899999999999999999999876
No 33
>PF15234 LAT: Linker for activation of T-cells
Probab=20.57 E-value=2.4e+02 Score=28.45 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=28.5
Q ss_pred CCCCCCCC--CCCCcchhhhhhhccCCCCCCCCCCCCCCCCCC
Q 009624 102 ARASIPGE--EYWPEGTASRVRAARAPEPTGESTGSPSYGKHP 142 (530)
Q Consensus 102 aRAsiP~~--eyWpegta~rVRaarAp~P~ges~g~ps~G~~p 142 (530)
+-|+-|.. -|||-.--.-+--.|.|.|.|-|--+||.-+.+
T Consensus 57 t~~pwp~avts~pplsqPDLLpIPRSPQp~ggShrmpSSrqds 99 (230)
T PF15234_consen 57 TLAPWPPAVTSYPPLSQPDLLPIPRSPQPPGGSHRMPSSRQDS 99 (230)
T ss_pred CCCCCCcccccCCCCCCcccccCCCCCCCCCCcccCcccccCC
Confidence 44555554 677777777777888999999888777644333
No 34
>PF12339 DNAJ_related: DNA-J related protein ; InterPro: IPR021059 This domain family is approximately 130 amino acids in length and contains a conserved YYLD sequence motif. The proteins have a C-terminal DNA-J domain PF00226 from PFAM and most of the sequences are annotated as DNA-J related proteins, other annotations include: DnaJ-class molecular chaperon and formate dehydrogenase; but there is currently no publications to support these annotations.
Probab=20.28 E-value=70 Score=29.31 Aligned_cols=74 Identities=35% Similarity=0.614 Sum_probs=44.4
Q ss_pred HHHHHHhhcceeeecCCCchhHH-----------HHHHHHhhhhHHH----------HhHH----HHH---HHHhhcCc-
Q 009624 258 FLKAMAETGQIKLYGEHPTLTET-----------ALYRARRHLFKEE----------RLKA----EQE---RLERIGPI- 308 (530)
Q Consensus 258 f~kAMAetGQIkL~Ge~PT~tEa-----------aL~rARrhl~kEE----------Rl~a----Eqe---Rle~iGpi- 308 (530)
.++++.+.|.+ +|+.-+...+- ||||-|.+|+.+. ||.. .+. -+...-|.
T Consensus 25 L~~~L~~~~~~-~f~~l~~~~~~~LFk~hFLl~naLY~Lq~~L~~~~~~L~I~~l~I~L~p~~~~~~~~~~~~~~~d~Lr 103 (132)
T PF12339_consen 25 LISQLQEQGYI-LFPELDLDPPLDLFKRHFLLFNALYQLQEQLRPEGEWLQISALDIRLMPYPSASQSSNNALDEDDPLR 103 (132)
T ss_pred HHHHHhhCcCc-cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHccCCeEEEEeEEEEEeecccccccccccccccchHH
Confidence 56777777776 55555544444 5566666655554 1110 000 01122222
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHhhcchhhHHHHHHh
Q 009624 309 AYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMF 346 (530)
Q Consensus 309 AYYsEWVkawKkDTSreAiqkhfeeTGEde~~QLi~Mf 346 (530)
+||-.| .+|++|.++++.+||+-|
T Consensus 104 ~YYLDw--------------~n~~~t~~~~V~~LL~~F 127 (132)
T PF12339_consen 104 EYYLDW--------------QNYEETSEAEVERLLNSF 127 (132)
T ss_pred HHHccH--------------HHHhhcCHHHHHHHHHHH
Confidence 599998 578899999999999987
No 35
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.15 E-value=85 Score=32.92 Aligned_cols=47 Identities=38% Similarity=0.659 Sum_probs=31.3
Q ss_pred CCCCcccccCCC-------CCcccCCCCCCCCCCCCCCCcchhhhhhhccCCCCCCCCCC--CCCCC
Q 009624 82 RPPYYSYFDSAS-------GQLEPASGARASIPGEEYWPEGTASRVRAARAPEPTGESTG--SPSYG 139 (530)
Q Consensus 82 ~PpY~SY~Dsts-------GqlePasGaRAsiP~~eyWpegta~rVRaarAp~P~ges~g--~ps~G 139 (530)
+|| -||+||+- |...||+|.||- +..++|++-+.+|.|+... --|.|
T Consensus 230 ~~P-VSyfisq~pPTR~nv~~~A~at~~~aa----------as~~~~~~~s~~p~g~t~~SGp~S~~ 285 (323)
T KOG4463|consen 230 PPP-VSYFISQAPPTRNNVGTIAPATGRRAA----------ASQPAPLPSSVEPSGETITSGPVSMG 285 (323)
T ss_pred CCc-hhhhcccCCcchhhhhhccccccchhh----------hcCCCCCccccCCCCcccCCCccccc
Confidence 456 89999875 677788887762 3345666667777776553 34454
No 36
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=20.12 E-value=58 Score=36.06 Aligned_cols=68 Identities=28% Similarity=0.514 Sum_probs=39.8
Q ss_pred HHhhcchhhHHHHHHhhhcchhHHHHHh--c-----cceeeecCccccccCHHHHhhhhcCCCCccccccccCCcccccc
Q 009624 331 YEETGEDENTQLIEMFCHQTDREYRIMM--G-----NDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDY 403 (530)
Q Consensus 331 feeTGEde~~QLi~Mf~hQT~rEYRiMm--G-----TDvRI~RDPLamRMredqIKQiWGGDPVYPTiNYiQDPdeViDY 403 (530)
+.+.|---+-..|+-|+.+-.++--=+. | +-|||.|-|-.+-+.=|.+- ..||++-+-.||.
T Consensus 448 ~~~~g~~t~i~~~~~~~~~~~~~iee~~~~~~~~~~~~~~~~~~~~~in~~~~~~~-----------~~~i~~~~~~id~ 516 (529)
T PRK06253 448 VKEEGVSTGIRYIDAFAAKAAAKIEEAAVSGEGEFKVRVRIVRSPSDINLKIDELA-----------LRYITGKNKKIDV 516 (529)
T ss_pred HHhcCCCcCcchHHHHHHHHHHHHHHHHhcCCCceEEEEEEecCchhceeeecHHH-----------HHHHhccCceEEe
Confidence 3444544455667777776665432221 1 23556665544443333332 2488999999999
Q ss_pred CCCCCC
Q 009624 404 RGPDFH 409 (530)
Q Consensus 404 Rgp~fH 409 (530)
|||-|-
T Consensus 517 rgpvf~ 522 (529)
T PRK06253 517 RGPVFL 522 (529)
T ss_pred ecceEE
Confidence 999884
Done!