Query 009624
Match_columns 530
No_of_seqs 14 out of 16
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 09:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fk4_A Rubisco-like protein; s 43.5 4.9 0.00017 40.9 -0.0 36 241-276 181-216 (414)
2 2w84_A Peroxisomal membrane pr 36.2 30 0.001 28.2 3.5 49 371-438 11-59 (70)
3 5rub_A Rubisco (ribulose-1,5-b 34.1 14 0.00048 38.6 1.6 46 241-286 222-269 (490)
4 3nwr_A A rubisco-like protein; 33.8 15 0.00051 37.7 1.7 36 241-276 202-237 (432)
5 3qfw_A Ribulose-1,5-bisphospha 31.8 21 0.00073 36.0 2.4 37 241-277 171-207 (378)
6 4f0h_A Ribulose bisphosphate c 31.3 15 0.00053 38.2 1.3 46 241-286 217-264 (493)
7 1wdd_A Ribulose bisphosphate c 28.5 17 0.00059 37.7 1.2 45 241-285 208-254 (477)
8 1bwv_A Rubisco, protein (ribul 27.5 20 0.00067 37.5 1.3 37 241-277 217-253 (493)
9 2ca6_A RAN GTPase-activating p 27.2 17 0.00057 33.1 0.7 13 400-412 307-319 (386)
10 1r9d_A Glycerol dehydratase; r 26.5 65 0.0022 35.1 5.1 112 278-398 212-350 (787)
11 2oem_A 2,3-diketo-5-methylthio 25.3 16 0.00054 37.2 0.2 36 241-276 180-215 (413)
12 2qyg_A Ribulose bisphosphate c 24.3 19 0.00066 37.1 0.6 36 241-276 225-260 (452)
13 1opc_A OMPR, OMPRC; transcript 23.7 46 0.0016 26.1 2.6 24 414-437 38-62 (110)
14 2d69_A Ribulose bisphosphate c 23.5 37 0.0013 34.8 2.4 37 241-277 193-229 (430)
15 1ykw_A Rubisco-like protein; b 23.4 20 0.00067 36.9 0.4 36 241-276 205-240 (435)
16 2pmu_A Response regulator PHOP 22.9 56 0.0019 25.9 2.9 24 414-437 41-65 (110)
17 2hqn_A Putative transcriptiona 22.8 50 0.0017 25.9 2.6 24 414-437 36-60 (109)
18 3kdn_A Rubisco, ribulose bisph 22.6 32 0.0011 35.4 1.8 38 241-278 196-233 (444)
19 3n5o_A Glutathione transferase 22.6 1.5E+02 0.005 24.9 5.6 70 256-339 159-230 (235)
20 2du7_A O-phosphoseryl-tRNA syn 22.3 21 0.00071 37.7 0.4 66 335-411 472-544 (549)
21 2yv2_A Succinyl-COA synthetase 22.3 11 0.00038 35.5 -1.5 40 383-425 54-97 (297)
22 3bbo_G Ribosomal protein L4; l 22.0 27 0.00092 34.4 1.1 24 413-436 234-257 (293)
23 2zvi_A 2,3-diketo-5-methylthio 21.8 20 0.0007 36.6 0.2 36 241-276 194-229 (425)
24 3rjp_A COVR; winged helix-turn 20.6 69 0.0024 24.4 2.9 24 414-437 29-53 (96)
25 2nu8_A Succinyl-COA ligase [AD 20.4 30 0.001 32.3 1.0 40 383-425 48-90 (288)
No 1
>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579}
Probab=43.51 E-value=4.9 Score=40.91 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=32.4
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT 276 (530)
..+|++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 181 ~q~f~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiT 216 (414)
T 3fk4_A 181 ENALTPLTKRIVSGKEVLQSVYETYGHKTLYAVNLT 216 (414)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhCCcceEEeEcC
Confidence 457999999999999999999999999999976666
No 2
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=36.19 E-value=30 Score=28.19 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=40.1
Q ss_pred cccCHHHHhhhhcCCCCccccccccCCccccccCCCCCCCCChhhHHHHHHhCccccHHHHHHHHhhh
Q 009624 371 MRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTKE 438 (530)
Q Consensus 371 mRMredqIKQiWGGDPVYPTiNYiQDPdeViDYRgp~fHEPTP~~v~~L~e~G~~IsrEel~~iL~kE 438 (530)
|-+||+.|.+- |+|.|||.-- +.|.-.=+.||+.+| +|-+|+++.|.+-
T Consensus 11 ~~~Re~li~~A---------v~FLqdp~V~--------~sp~~~K~~FL~sKG--Lt~eEI~~Al~ra 59 (70)
T 2w84_A 11 VLPREPLIATA---------VKFLQNSRVR--------QSPLATRRAFLKKKG--LTDEEIDMAFQQS 59 (70)
T ss_dssp SCCCHHHHHHH---------HHHHCSTTGG--------GSCHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred CCchHHHHHHH---------HHHhCChhhh--------hCCHHHHHHHHHHcC--CCHHHHHHHHHHc
Confidence 56899999985 7899999743 478888999999998 5888888877764
No 3
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase); lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum} SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A* 1rba_A
Probab=34.09 E-value=14 Score=38.58 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=37.8
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch--hHHHHHHHH
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL--TETALYRAR 286 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT~--tEaaL~rAR 286 (530)
..++++|..|.+-|=-++.+|-+|||++|+|==..|- .|.-+.||+
T Consensus 222 sQpf~p~~eR~~~v~eAi~rA~~eTGe~k~y~~NITa~~~~eM~~RAe 269 (490)
T 5rub_A 222 NQPFAPLRDTIALVADAMRRAQDETGEAKLFSANITADDPFEIIARGE 269 (490)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhCCceeEEeccCCCCHHHHHHHHH
Confidence 4679999999999999999999999999999887774 354455543
No 4
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum}
Probab=33.80 E-value=15 Score=37.70 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=33.1
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT 276 (530)
..+|++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 202 ~q~f~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiT 237 (432)
T 3nwr_A 202 NPAHAPLAERVRAVMSEVRRYRERSGRPVMVAFNIT 237 (432)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCcceEEeecC
Confidence 467999999999999999999999999999987777
No 5
>3qfw_A Ribulose-1,5-bisphosphate carboxylase/oxygenase L subunit; structural genomics, PSI-2, protein structure initiative; 1.79A {Rhodopseudomonas palustris}
Probab=31.76 E-value=21 Score=35.97 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=33.8
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL 277 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT~ 277 (530)
..+|++|..|.+-|--++.+|-+|||++|+|=-..|-
T Consensus 171 ~qpf~p~~eR~~~~~eai~ra~~eTGe~k~y~~NiTa 207 (378)
T 3qfw_A 171 DQAFSPFAERAAAVGKAVREANAARGGRTLYAPNISG 207 (378)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHTCCCEEECBCCS
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhhCCccEEEeecCC
Confidence 4679999999999999999999999999999888885
No 6
>4f0h_A Ribulose bisphosphate carboxylase large chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_A 4f0m_A 1bwv_A* 1iwa_A 1bxn_A
Probab=31.28 E-value=15 Score=38.23 Aligned_cols=46 Identities=30% Similarity=0.288 Sum_probs=37.6
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch--hHHHHHHHH
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL--TETALYRAR 286 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT~--tEaaL~rAR 286 (530)
+.+|++|..|.+-|--++.+|.+|||++|+|==..|- .+.-+.||+
T Consensus 217 ~Qpf~p~~eRv~~v~eai~rA~~eTGe~K~~~~NiTa~~~~eM~~Ra~ 264 (493)
T 4f0h_A 217 SQPFMRWRERYLFVMEAVNKAAAATGEVKGHYLNVTAATMEEMYARAQ 264 (493)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhHCCcceEEeecCCCCHHHHHHHHH
Confidence 5679999999999999999999999999999877774 244555554
No 7
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A* 3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L 1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A* 1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ...
Probab=28.53 E-value=17 Score=37.68 Aligned_cols=45 Identities=31% Similarity=0.344 Sum_probs=36.2
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCchh--HHHHHHH
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTLT--ETALYRA 285 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT~t--EaaL~rA 285 (530)
+.++++|..|.+-|--++.+|.+|||++|+|==..|-. +.-+.||
T Consensus 208 ~qpf~p~~eR~~~v~eai~rA~~eTGe~k~~~~NiTa~~~~eM~~Ra 254 (477)
T 1wdd_A 208 SQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRA 254 (477)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCcceeecCcCCCCHHHHHHHH
Confidence 46799999999988888999999999999998777753 3334444
No 8
>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A
Probab=27.55 E-value=20 Score=37.53 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=33.1
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL 277 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT~ 277 (530)
..++++|..|.+-|--++.+|.+|||++|+|==..|-
T Consensus 217 ~qpf~p~~eR~~~v~eai~rA~~eTGe~k~~~~NiTa 253 (493)
T 1bwv_A 217 SQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTA 253 (493)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCcceeeccCCC
Confidence 4679999999998888999999999999999877774
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=27.22 E-value=17 Score=33.15 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=5.9
Q ss_pred ccccCCCCCCCCC
Q 009624 400 VIDYRGPDFHEPT 412 (530)
Q Consensus 400 ViDYRgp~fHEPT 412 (530)
.+|..+-.|....
T Consensus 307 ~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 307 FLELNGNRFSEED 319 (386)
T ss_dssp EEECTTSBSCTTS
T ss_pred EEEccCCcCCcch
Confidence 3444554454433
No 10
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=26.46 E-value=65 Score=35.12 Aligned_cols=112 Identities=22% Similarity=0.264 Sum_probs=74.6
Q ss_pred hHHHHHHHHhhhhHHHHhHHHH---HHHHhhcCchhHHHHHHHHhhcccHHHHHH--------HHHhhcch----hhHHH
Q 009624 278 TETALYRARRHLFKEERLKAEQ---ERLERIGPIAYYSEWVKAWKRDTSREAIQK--------HYEETGED----ENTQL 342 (530)
Q Consensus 278 tEaaL~rARrhl~kEERl~aEq---eRle~iGpiAYYsEWVkawKkDTSreAiqk--------hfeeTGEd----e~~QL 342 (530)
.|+...=|+|+-=.-|.|-+.+ +|+++.=-||=-.+||-+-.=.|-+||||- |.|.+|-. -.+|+
T Consensus 212 ~eavi~~a~Rya~la~elA~~e~d~~rk~EL~~iA~~~~~vp~~pa~tf~EAlQ~~~f~~l~~~~E~ng~~~S~GR~Dq~ 291 (787)
T 1r9d_A 212 CEAAITYVNRYAKKAKEIADNTSDAKRKAELNEIAKICSKVSGEGAKSFYEACQLFWFIHAIINIESNGHSISPARFDQY 291 (787)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHCCCSCBCCBSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhhhccCCCcccCccHHHH
Confidence 5777777777755545454333 678787778888999998888899999996 44566632 45666
Q ss_pred HHHhhhc-------chhH----HHHHhccceeeecCccccccCHHHHhhhhcCCCCcccccc-ccCCc
Q 009624 343 IEMFCHQ-------TDRE----YRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNY-IQDPD 398 (530)
Q Consensus 343 i~Mf~hQ-------T~rE----YRiMmGTDvRI~RDPLamRMredqIKQiWGGDPVYPTiNY-iQDPd 398 (530)
|.=|--. -+.| +.|++. +++-.|+|- --+..+|+|.|-++|- -++||
T Consensus 292 L~Pyy~~Dl~lt~eeA~Eli~~f~iK~~-~~~~~r~~~--------~~~~f~G~~~~~~~~iGG~~~d 350 (787)
T 1r9d_A 292 MYPYYENDKNITDKFAQELIDCIWIKLN-DINKVRDEI--------STKHFGGYPMYQNLIVGGQNSE 350 (787)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHTT-TBCCCCCTT--------HHHHSCSSCCCCEEEECCBCTT
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHHhh-cccccCCcc--------hhhccCCCCCcceEEECCcCCC
Confidence 6654211 1111 345544 566556654 4478999999998887 57765
No 11
>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A
Probab=25.34 E-value=16 Score=37.20 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=31.9
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT 276 (530)
+.++++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 180 ~qpf~p~~eR~~~v~eai~ra~~eTGe~k~~~~NiT 215 (413)
T 2oem_A 180 DSELLPFEKRITEGKAALQEVYEQTGKRTLYAVNLT 215 (413)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHCCcceeeCcCC
Confidence 446999999999888889999999999999987766
No 12
>2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris}
Probab=24.34 E-value=19 Score=37.09 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=32.0
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT 276 (530)
..++++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 225 ~qpf~p~~eR~~~v~eai~ra~~eTGe~k~y~~NiT 260 (452)
T 2qyg_A 225 DVDWCPLAERAALLGDACRRASAETGVPKIYLANIT 260 (452)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCcceecCcCC
Confidence 456999999998888889999999999999987766
No 13
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=23.72 E-value=46 Score=26.10 Aligned_cols=24 Identities=25% Similarity=0.381 Sum_probs=19.3
Q ss_pred hhHHHHHHh-CccccHHHHHHHHhh
Q 009624 414 NMLDYLKEH-GKVISREELEEILTK 437 (530)
Q Consensus 414 ~~v~~L~e~-G~~IsrEel~~iL~k 437 (530)
.+|.+|..| |.++||++|.+.+=.
T Consensus 38 ~lL~~L~~~~g~~vsr~~L~~~vW~ 62 (110)
T 1opc_A 38 AVLKALVSHPREPLSRDKLMNLARG 62 (110)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHCC
T ss_pred HHHHHHHHcCCceEcHHHHHHHHcC
Confidence 478888665 899999999988843
No 14
>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.90A {Pyrococcus horikoshii} SCOP: c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A
Probab=23.51 E-value=37 Score=34.82 Aligned_cols=37 Identities=27% Similarity=0.210 Sum_probs=33.0
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCch
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTL 277 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT~ 277 (530)
+.++++|..|.+-|--++.+|.+|||++|+|==..|-
T Consensus 193 ~qpf~p~~eRv~~v~eai~ra~~eTGe~k~y~~NiTa 229 (430)
T 2d69_A 193 SFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITG 229 (430)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBCCS
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhCCccEEEeecCC
Confidence 4579999999998888999999999999999877774
No 15
>1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB: 1tel_A
Probab=23.35 E-value=20 Score=36.86 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=32.1
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT 276 (530)
..++++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 205 ~qpf~p~~eR~~~v~eai~~a~~eTGe~k~~~~NiT 240 (435)
T 1ykw_A 205 DVTWSSIEERAAHLGKARRKAEAETGEPKIYLANIT 240 (435)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCcceeecccC
Confidence 456999999999888889999999999999987666
No 16
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=22.95 E-value=56 Score=25.87 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=19.2
Q ss_pred hhHHHHHHh-CccccHHHHHHHHhh
Q 009624 414 NMLDYLKEH-GKVISREELEEILTK 437 (530)
Q Consensus 414 ~~v~~L~e~-G~~IsrEel~~iL~k 437 (530)
.+|.+|..| |.++||++|.+.+=.
T Consensus 41 ~lL~~L~~~~g~~vsr~~L~~~vW~ 65 (110)
T 2pmu_A 41 TLLRYFVINAGTVLSKPKILDHVWR 65 (110)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHSC
T ss_pred HHHHHHHHCCCEEEcHHHHHHHHcC
Confidence 477787665 999999999988743
No 17
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=22.76 E-value=50 Score=25.85 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=19.7
Q ss_pred hhHHHHHHh-CccccHHHHHHHHhh
Q 009624 414 NMLDYLKEH-GKVISREELEEILTK 437 (530)
Q Consensus 414 ~~v~~L~e~-G~~IsrEel~~iL~k 437 (530)
.+|.+|..| |.++||++|.+.+=.
T Consensus 36 ~lL~~L~~~~g~~vsr~~L~~~vW~ 60 (109)
T 2hqn_A 36 EVLTHLARHRDQIVSKEQLLDAIWE 60 (109)
T ss_dssp HHHHHHHHHTCSEEEHHHHHHHHCC
T ss_pred HHHHHHHHCCCeeEcHHHHHHHHcC
Confidence 688888665 899999999988843
No 18
>3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A*
Probab=22.63 E-value=32 Score=35.36 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=33.6
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCchh
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTLT 278 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT~t 278 (530)
..+|++|..|.+-|--++.+|-+|||++|+|==..|-.
T Consensus 196 ~qpf~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiTa~ 233 (444)
T 3kdn_A 196 SPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITAD 233 (444)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEeecCCC
Confidence 45699999999999999999999999999998777743
No 19
>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A*
Probab=22.62 E-value=1.5e+02 Score=24.92 Aligned_cols=70 Identities=23% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcceeeecCCCchhHHHHHHHHhhhhHHHHhHHHHHHHHhhc-CchhHHHHHHHHh-hcccHHHHHHHHHh
Q 009624 256 TVFLKAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIG-PIAYYSEWVKAWK-RDTSREAIQKHYEE 333 (530)
Q Consensus 256 TVf~kAMAetGQIkL~Ge~PT~tEaaL~rARrhl~kEERl~aEqeRle~iG-piAYYsEWVkawK-kDTSreAiqkhfee 333 (530)
.++.+.++++|+=-|.|+++|++..+|+-.=..+. ..| .+.=|.. |.+|- |=.+|.+|++.++.
T Consensus 159 ~~le~~L~~~~~~fl~G~~~t~ADi~l~~~l~~~~-------------~~~~~~~~~p~-l~~w~~~~~~~p~~~~~~~~ 224 (235)
T 3n5o_A 159 GAVEKLLELSAGRFCVGDEITLADVCLVPAVWAAE-------------RVGMDLARFPI-TKRVFEEMLKEEAVQKAHWQ 224 (235)
T ss_dssp HHHHHHHHHHBSSSSSBTSCCHHHHHHHHHHHHHH-------------HTTCCGGGSHH-HHHHHHHHHTCHHHHHTCGG
T ss_pred HHHHHHHHhcCCCcccCCcccHHHHHHHHHHHHHH-------------HhCCCcccChH-HHHHHHHHHcCHHHHhhCcc
Confidence 34556666657778999999999999986544331 122 1222332 33333 55568899998888
Q ss_pred hcchhh
Q 009624 334 TGEDEN 339 (530)
Q Consensus 334 TGEde~ 339 (530)
-+.+.-
T Consensus 225 ~~~~~p 230 (235)
T 3n5o_A 225 KQEDTP 230 (235)
T ss_dssp GSTTSC
T ss_pred cCCCch
Confidence 776543
No 20
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=22.32 E-value=21 Score=37.74 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=38.5
Q ss_pred cchhhHHHHHHhhhcchhHHHH--Hhc-----cceeeecCccccccCHHHHhhhhcCCCCccccccccCCccccccCCCC
Q 009624 335 GEDENTQLIEMFCHQTDREYRI--MMG-----NDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPD 407 (530)
Q Consensus 335 GEde~~QLi~Mf~hQT~rEYRi--MmG-----TDvRI~RDPLamRMredqIKQiWGGDPVYPTiNYiQDPdeViDYRgp~ 407 (530)
|---+-..|+-|+.+-.++--= +-| +-|||.|-|-.+-+.=|.+- .+||.+-+.+||.|||-
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~-----------~~~~~~~~~~~d~rgp~ 540 (549)
T 2du7_A 472 GVSTNIRYIDGIIYKLVAKIEEALVSNVDEFKFRVPIVRSLSDINLKIDELA-----------LKQIMGENKVIDVRGPV 540 (549)
T ss_dssp CEECCCCHHHHHHHHHHHHHHHHHTTTCCCCCCCCCCSSSSCSSSCCCCHHH-----------HHHHTTTTCCBCCCCCC
T ss_pred CCCcCcchHHHHHHHHHHHHHHHHhcCCCceEEEEEEecChhhceeeecHHH-----------HHHHhcCCceEEeeCce
Confidence 3333345566666665543322 233 23556665554444333332 25889999999999999
Q ss_pred CCCC
Q 009624 408 FHEP 411 (530)
Q Consensus 408 fHEP 411 (530)
|-.-
T Consensus 541 f~~~ 544 (549)
T 2du7_A 541 FLNA 544 (549)
T ss_dssp CCCC
T ss_pred EEEE
Confidence 9643
No 21
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=22.26 E-value=11 Score=35.50 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=33.1
Q ss_pred cCCCCcccccccc---C-CccccccCCCCCCCCChhhHHHHHHhCcc
Q 009624 383 GGDPVYPTVNYIQ---D-PDEVIDYRGPDFHEPTPNMLDYLKEHGKV 425 (530)
Q Consensus 383 GGDPVYPTiNYiQ---D-PdeViDYRgp~fHEPTP~~v~~L~e~G~~ 425 (530)
.|-||||++.=+. . ||-||+|..|.+| ++++..+.++|+-
T Consensus 54 ~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~---~~~v~ea~~~Gi~ 97 (297)
T 2yv2_A 54 HGVPVYDSVKEALAEHPEINTSIVFVPAPFA---PDAVYEAVDAGIR 97 (297)
T ss_dssp TTEEEESSHHHHHHHCTTCCEEEECCCGGGH---HHHHHHHHHTTCS
T ss_pred CCEeeeCCHHHHhhcCCCCCEEEEecCHHHH---HHHHHHHHHCCCC
Confidence 4899999987443 3 9999999999775 8899999999874
No 22
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.99 E-value=27 Score=34.37 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.6
Q ss_pred hhhHHHHHHhCccccHHHHHHHHh
Q 009624 413 PNMLDYLKEHGKVISREELEEILT 436 (530)
Q Consensus 413 P~~v~~L~e~G~~IsrEel~~iL~ 436 (530)
-|+++.|+-+=++||+.-|++|-.
T Consensus 234 LNvydLl~~~~lViT~~Al~~Lee 257 (293)
T 3bbo_G 234 LNLFDVLNAEKLVFTEGTIQYLNQ 257 (293)
T ss_dssp CCHHHHHHSSCEECCTTHHHHHHH
T ss_pred eeHHHhhCCCcEEEEHHHHHHHHH
Confidence 578999999999999999888743
No 23
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis}
Probab=21.80 E-value=20 Score=36.63 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=31.8
Q ss_pred hhhhhHhhhcCCChHHHHHHHHHhhcceeeecCCCc
Q 009624 241 KEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPT 276 (530)
Q Consensus 241 kE~WSrWQrR~pDvdTVf~kAMAetGQIkL~Ge~PT 276 (530)
+.++++|..|.+-|--++.+|.+|||++|+|==..|
T Consensus 194 ~qpf~p~~eRv~~v~eai~ra~~eTGe~k~y~~NiT 229 (425)
T 2zvi_A 194 ETGLAPFETRIAEGKQILKETYEQTGHKTLYAVNLT 229 (425)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCCcceeeCcCC
Confidence 456999999998888889999999999999976666
No 24
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=20.62 E-value=69 Score=24.41 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=19.0
Q ss_pred hhHHHHHH-hCccccHHHHHHHHhh
Q 009624 414 NMLDYLKE-HGKVISREELEEILTK 437 (530)
Q Consensus 414 ~~v~~L~e-~G~~IsrEel~~iL~k 437 (530)
.+|.+|.. .|.++||++|.+.+=.
T Consensus 29 ~lL~~L~~~~g~~vsr~~L~~~vw~ 53 (96)
T 3rjp_A 29 DLLNILMTNMNRVMTREELLSNVWK 53 (96)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHSS
T ss_pred HHHHHHHhCCCeeEcHHHHHHHHcC
Confidence 57777765 5899999999888753
No 25
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=20.35 E-value=30 Score=32.31 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=32.9
Q ss_pred cCCCCccccccc-c--CCccccccCCCCCCCCChhhHHHHHHhCcc
Q 009624 383 GGDPVYPTVNYI-Q--DPDEVIDYRGPDFHEPTPNMLDYLKEHGKV 425 (530)
Q Consensus 383 GGDPVYPTiNYi-Q--DPdeViDYRgp~fHEPTP~~v~~L~e~G~~ 425 (530)
.|-|||+++.=. . +||.||++..+.+| ++++..+-++|+-
T Consensus 48 ~G~~vy~sl~el~~~~~~D~viI~tP~~~~---~~~~~ea~~~Gi~ 90 (288)
T 2nu8_A 48 LGLPVFNTVREAVAATGATASVIYVPAPFC---KDSILEAIDAGIK 90 (288)
T ss_dssp TTEEEESSHHHHHHHHCCCEEEECCCGGGH---HHHHHHHHHTTCS
T ss_pred CCeeccCCHHHHhhcCCCCEEEEecCHHHH---HHHHHHHHHCCCC
Confidence 468999997633 3 79999999999887 7888888889864
Done!