BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009626
(530 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P806|SAM50_XENTR Sorting and assembly machinery component 50 homolog OS=Xenopus
tropicalis GN=samm50 PE=2 SV=1
Length = 468
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 139/500 (27%), Positives = 219/500 (43%), Gaps = 73/500 (14%)
Query: 38 EDDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEA 97
DD DL E +PQ+K + +EN V RVH +G +TKD LI
Sbjct: 22 HDDADLVE----VEPQKKQEI----LEN------KDVVVQRVH---FEGLGRTKDDLIAH 64
Query: 98 ELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVET 155
E+ + A + E+++ ++ KL L F +VE+ +D+ G LP +V +V E
Sbjct: 65 EIGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEGEDALPNGLDVTFEVTEL 124
Query: 156 KTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLP 213
+ L+G T G + S V G LK N FG + +YG + E S G+ + P
Sbjct: 125 RR-LTGSYNTMV-GNNEGSMVLG-LKLPNLFGRAEKMTFQFSYG---TKETSYGLSFFKP 178
Query: 214 RFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDP 270
+ + ++ + +SS +E G+S + F I H L + WR L
Sbjct: 179 QVGNFERNFSVNLY-KVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCL 237
Query: 271 SHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFL 330
+ +S +R + GH SSL +T D RN+ + P RG ++ G + FL
Sbjct: 238 ARTASFAIREESGHTLKSSLSHTMVIDSRNTSILPKRGALLKINQELAGYTGGD--VSFL 295
Query: 331 RQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGG 390
+++F+L+ + + L+ + G+++PIG +S+ +RF+ LGG
Sbjct: 296 KEDFELQLNKQLA-WDSVLSTSLWGGMLVPIGDK----PSSIADRFY----------LGG 340
Query: 391 PSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFR 450
P+++ GF +GP SE D+LGG+ + L LP R
Sbjct: 341 PTSVRGFSMYSIGP-----------------QSEGDYLGGEAYWAGGMHLYTPLPFR--P 381
Query: 451 EKGIHG-----HLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPT-NLFRLEV 504
+G G H F AGN+ L E L + + R S GAGIV N+ RLE+
Sbjct: 382 GRGGFGDLFRTHFFLNAGNLCNLNYGEGPRAHLRRLAECIRWSYGAGIVLRLGNIARLEL 441
Query: 505 NYCRILKKSSHDHGKNGIQI 524
NYC + S D +G+Q
Sbjct: 442 NYCIPMGVQSGDRICDGVQF 461
>sp|Q6PA35|SAM5B_XENLA Sorting and assembly machinery component 50 homolog B OS=Xenopus
laevis GN=samm50-b PE=2 SV=1
Length = 468
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 135/499 (27%), Positives = 220/499 (44%), Gaps = 73/499 (14%)
Query: 39 DDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAE 98
DD DL E +P++K + +EN V RVH +G +TKD LI E
Sbjct: 23 DDADLVE----VEPEKKQEI----LEN------KDVVVQRVH---FEGLGRTKDDLIAHE 65
Query: 99 LDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVETK 156
+ + A + E+++ ++ KL L F +VE+ +D+ G +P +V +V E +
Sbjct: 66 IGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTSEGEDAVPNGLDVTFEVTELR 125
Query: 157 TPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLPR 214
L+G T G + S V G LK+ N FG + +YG + E S G+ + P+
Sbjct: 126 R-LTGSYNTMV-GNNEGSMVLG-LKFPNLFGRAEKMTFQFSYG---TKETSYGLSFFKPQ 179
Query: 215 FKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDPS 271
+ ++ + +SS +E G+S + F I H L + WR L +
Sbjct: 180 VGNFERNFSVNLY-KVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCLA 238
Query: 272 HMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLR 331
+S +R + GH SSL +T D RN+ + P RG ++ G + FL+
Sbjct: 239 RTASFAIREESGHTLKSSLSHTMVIDSRNASILPKRGALLKINQELAGYTGGD--VSFLK 296
Query: 332 QEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGP 391
++F+L+ + + L+ + G+++P+G +S+ +RF+ LGGP
Sbjct: 297 EDFELQLNKQLA-WDSVLSTSLWGGMLVPVG----DRPSSIADRFY----------LGGP 341
Query: 392 SALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFRE 451
+++ GF +GP SE D+LGG+ + L LP R
Sbjct: 342 TSVRGFSMYSIGP-----------------QSEGDYLGGEAYWAGGVHLYTPLPFR--PG 382
Query: 452 KGIHG-----HLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPT-NLFRLEVN 505
+G G H F AGN+ L E L + + R S GAG+V N+ RLE+N
Sbjct: 383 RGGFGDLFRTHFFLNAGNLCNLNYGEGPRAHLQRLAECIRWSYGAGLVLRLGNIARLELN 442
Query: 506 YCRILKKSSHDHGKNGIQI 524
YC + S D +G+Q
Sbjct: 443 YCIPMGVQSGDRICDGVQF 461
>sp|Q7ZWS5|SAM5A_XENLA Sorting and assembly machinery component 50 homolog A OS=Xenopus
laevis GN=samm50-a PE=2 SV=1
Length = 468
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 134/499 (26%), Positives = 219/499 (43%), Gaps = 73/499 (14%)
Query: 39 DDDDLEEDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAE 98
DD DL E +PQ+K + +EN V RVH +G +TKD L+ E
Sbjct: 23 DDADLVE----VEPQKKQEI----LEN------KDVVVQRVH---FEGLGRTKDDLVAHE 65
Query: 99 LDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVETK 156
+ + A + E+++ ++ KL L F +VE+ +D+ G +P +V +V E +
Sbjct: 66 IGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEGEDAVPNGLDVTFEVTELR 125
Query: 157 TPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLPR 214
++G T G + S V G LK N FG + +YG + E S G+ + P+
Sbjct: 126 R-VTGSYNTMV-GNNEGSMVLG-LKLPNLFGRAEKMTFQFSYG---TKETSYGLSFFKPQ 179
Query: 215 FKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDPS 271
+ ++ + +SS +E G+S + F I H L + WR L +
Sbjct: 180 VGNFERNFSVNLY-KVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCLA 238
Query: 272 HMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLR 331
+S T+R + GH SSL ++ D RN+ + P G ++ G + FL+
Sbjct: 239 RTASFTIREESGHTLKSSLSHSMVIDSRNASILPKSGALLKINQELAGYTGGD--VSFLK 296
Query: 332 QEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGP 391
++F+L+ + + L+ + G+++PIG +S+ +RF+ LGGP
Sbjct: 297 EDFELQLNRQLT-WDSVLSTSLWGGMLVPIG----DRPSSIADRFY----------LGGP 341
Query: 392 SALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFRE 451
+++ GF +GP SE D+LGG+ + L LP R
Sbjct: 342 TSVRGFSMYSIGP-----------------QSEGDYLGGEAYWAGGVHLYTPLPFR--PG 382
Query: 452 KGIHG-----HLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPT-NLFRLEVN 505
+G G H F AGN+ L E L + + R S GAG+V N+ RLE+N
Sbjct: 383 RGGFGDLFRTHFFLNAGNLCNLNYGEGPGAHLRRLAECIRWSYGAGLVLRLGNIARLELN 442
Query: 506 YCRILKKSSHDHGKNGIQI 524
YC + S D +G+Q
Sbjct: 443 YCIPMGVQSGDRICDGVQF 461
>sp|Q5U3I0|SAM5B_DANRE Sorting and assembly machinery component 50 homolog B OS=Danio
rerio GN=samm50b PE=2 SV=1
Length = 469
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 124/458 (27%), Positives = 197/458 (43%), Gaps = 56/458 (12%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLD-- 136
V V ++G +TK+ + E+ + A + E+++ ++ +L L F VE+ +D
Sbjct: 47 VQHVNIEGLGRTKEDYLGYEISDVFTARNLVEVMRKSHEARQRLLRLGIFRDVEVVIDIS 106
Query: 137 SGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E K L+G T G + S V G +K N G G+
Sbjct: 107 EGADALPNGLDVTFEVTELKR-LTGSYNTMV-GNNEGSMVLG-IKLPNMLGRGEKLTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL---F 251
+YG + E S G+ + P+ T ++ + +SS KE G+S L
Sbjct: 164 SYG---TKETSYGLSFFKPQSGYFERNFTVNLY-KVTGQFPWSSLKETDRGVSTELSLPL 219
Query: 252 SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
+ H L + WR L + +S VR + GH S+L +T D RNS + P +G
Sbjct: 220 WMTDHTLKWEGVWRELGCLARSASFAVREESGHTLKSALSHTMVVDTRNSAILPRKGALL 279
Query: 312 VSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTS 371
++ G FL+++ +L+ F + + L+ + G++ P+G TS
Sbjct: 280 RINQELAGYTGGDA--NFLKEDVELQLNKQF-IWGSVLSASLWGGMIYPLGAQ----PTS 332
Query: 372 LPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGD 431
+ +RF+ LGGP+++ GF +GP SE D+LGG+
Sbjct: 333 IADRFY----------LGGPTSVRGFGMYSIGP-----------------QSEGDYLGGE 365
Query: 432 LAVSAFADLSFDLPLRWFREKG-----IHGHLFACAGNVAKLTENEYRNFSLPKFLQSTR 486
+ L LP R KG H F AGN+ L E L K + R
Sbjct: 366 AYWAGGLHLYTPLPFR--SNKGGLADLFRTHFFLNAGNICNLNYGEGPRAHLQKLAECIR 423
Query: 487 SSVGAGIVFPT-NLFRLEVNYCRILKKSSHDHGKNGIQ 523
S GAGI+ N+ RLE+NYC + S D +G+Q
Sbjct: 424 WSYGAGIILRLGNIARLELNYCFPMGVQSGDRICDGVQ 461
>sp|Q803G5|SAM5A_DANRE Sorting and assembly machinery component 50 homolog A OS=Danio
rerio GN=samm50a PE=2 SV=1
Length = 469
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 127/493 (25%), Positives = 217/493 (44%), Gaps = 67/493 (13%)
Query: 45 EDDDAAQPQRKSRVDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRN 104
+D D +P+R+ + + +EN + V V + G +TK+ ++ E+ + +
Sbjct: 24 DDMDLGEPEREEK--QEVLEN---------KDVVVQHVHIDGLGRTKEDILTYEIADVFH 72
Query: 105 ATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVETKTPLSGQ 162
A + ++++ ++ KL L F VE+ +D+ G LP +V +V E + ++G
Sbjct: 73 AKNLIDVMKKSHEARQKLLRLGIFRHVEVVIDTAEGADALPNGLDVTFEVRELRR-MTGS 131
Query: 163 IGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGV--YLPRFKGLVT 220
T G + S V G +K N G + +YG + E S G+ + P+
Sbjct: 132 YNTMV-GNNEGSMVLG-IKLPNVLGRAEKLTFQFSYG---TKETSYGLSFFKPQPGHFER 186
Query: 221 PMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI--RHHDLVYNLAWRTLTDPSHMSSNT 277
+ ++ + +SS +E G+S + F I H L + WR L + +S
Sbjct: 187 NFSLNLY-KVTGQFPWSSLRETDRGVSAEISFPIWRTSHTLKWEGVWRELGCLARTASFA 245
Query: 278 VRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLR 337
VR + GH SSL + D RNS + P +G ++ G + FL+++F+++
Sbjct: 246 VREESGHSLKSSLAHAMVIDTRNSTILPRKGALLKINQELAGYTGGD--VSFLKEDFEIQ 303
Query: 338 FAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGF 397
F+ + L+ + G++LP+G ++S+ +RF+ LGGP+++ GF
Sbjct: 304 LNKTL-FWDSVLSTSLWGGMLLPLGEK----ASSIADRFY----------LGGPTSVRGF 348
Query: 398 KTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHG- 456
+GP SE D+LGG+ + L LP R +G G
Sbjct: 349 SMYSIGP-----------------QSEGDYLGGEAYWAGGVHLYTPLPFR--PGRGGFGD 389
Query: 457 ----HLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPT-NLFRLEVNYCRILK 511
H F AGN+ L E L K + R S GAGIV N+ RLE+NYC +
Sbjct: 390 LFRTHFFLNAGNLCNLNYGEGPRAHLSKLAECIRWSYGAGIVLRLGNIARLELNYCIPMG 449
Query: 512 KSSHDHGKNGIQI 524
S D +G+Q
Sbjct: 450 VQSGDRICDGVQF 462
>sp|Q8BGH2|SAM50_MOUSE Sorting and assembly machinery component 50 homolog OS=Mus musculus
GN=Samm50 PE=1 SV=1
Length = 469
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 122/459 (26%), Positives = 197/459 (42%), Gaps = 56/459 (12%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
V V G +TKD +I E+ + A + E+++ ++ KL L F V++ +D+
Sbjct: 47 VQHVHFDGLGRTKDDIIICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTC 106
Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E + L+G T G + S V G LK N G +
Sbjct: 107 HGEDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSI- 253
+YG + E S G+ + P+ + ++ + +SS +E G+S +S
Sbjct: 164 SYG---TKETSYGLSFFKPQPGNFERNFSVNLY-KVTGQFPWSSLRETDRGVS-AEYSFP 218
Query: 254 ---RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA 310
H + + WR L S +S VR++ GH SSL + D RNS + P RG
Sbjct: 219 LWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGAL 278
Query: 311 FVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMST 370
F ++ G + F++++F+L+ P + + + G+++PIG +
Sbjct: 279 FKVNQELAGYTGGD--VSFIKEDFELQLNKPLAL-DSVFSTSLWGGMLVPIGDK----PS 331
Query: 371 SLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGG 430
S+ +RF+ LGGP+++ GF +GP SE D+LGG
Sbjct: 332 SIADRFY----------LGGPTSVRGFSMHSIGP-----------------QSEGDYLGG 364
Query: 431 DLAVSAFADLSFDLPLR----WFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTR 486
+ + L LP R F E H F AGN+ L E + K + R
Sbjct: 365 EAYWAGGLHLYTPLPFRPGQGGFGEL-FRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIR 423
Query: 487 SSVGAGIVFPT-NLFRLEVNYCRILKKSSHDHGKNGIQI 524
S GAG+V N+ RLE+NYC + D +G+Q
Sbjct: 424 WSYGAGVVLRLGNIARLELNYCIPMGVQGGDRICDGVQF 462
>sp|Q9Y512|SAM50_HUMAN Sorting and assembly machinery component 50 homolog OS=Homo sapiens
GN=SAMM50 PE=1 SV=3
Length = 469
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 123/458 (26%), Positives = 196/458 (42%), Gaps = 54/458 (11%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
V V G +TKD +I E+ + A + E+++ ++ KL L F V++ +D+
Sbjct: 47 VQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 106
Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E + L+G T G + S V G LK N G +
Sbjct: 107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL-FSI 253
+YG + E S G+ + PR + ++ + +SS +E G+S F I
Sbjct: 164 SYG---TKETSYGLSFFKPRPGNFERNFSVNLY-KVTGQFPWSSLRETDRGMSAEYSFPI 219
Query: 254 --RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
H + + WR L S +S VR++ GH SSL + D RNS + P RG
Sbjct: 220 WKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALL 279
Query: 312 VSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTS 371
++ G + F++++F+L+ + + + G+++PIG +S
Sbjct: 280 KVNQELAGYTGGD--VSFIKEDFELQLNKQL-IFDSVFSASFWGGMLVPIGDK----PSS 332
Query: 372 LPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGD 431
+ +RF+ LGGP+++ GF +GP SE D+LGG+
Sbjct: 333 IADRFY----------LGGPTSIRGFSMHSIGP-----------------QSEGDYLGGE 365
Query: 432 LAVSAFADLSFDLPLR----WFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRS 487
+ L LP R F E H F AGN+ L E + K + R
Sbjct: 366 AYWAGGLHLYTPLPFRPGQGGFGEL-FRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRW 424
Query: 488 SVGAGIVFPT-NLFRLEVNYCRILKKSSHDHGKNGIQI 524
S GAGIV N+ RLE+NYC + + D +G+Q
Sbjct: 425 SYGAGIVLRLGNIARLELNYCVPMGVQTGDRICDGVQF 462
>sp|Q6AXV4|SAM50_RAT Sorting and assembly machinery component 50 homolog OS=Rattus
norvegicus GN=Samm50 PE=1 SV=1
Length = 469
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 120/458 (26%), Positives = 194/458 (42%), Gaps = 54/458 (11%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
V V G +TKD +I E+ + A + E+++ ++ KL L F V++ +D+
Sbjct: 47 VQHVHFDGLERTKDDIIICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTC 106
Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E + L+G T G + S V G LK N G +
Sbjct: 107 HGEDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL---F 251
+YG + E S G+ + P+ + ++ + +SS +E G+S
Sbjct: 164 SYG---TKETSYGLSFFKPQPGNFEKNFSVNLY-KVTGQFPWSSLRETDRGVSAEYSFPL 219
Query: 252 SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAF 311
H + + WR L + +S VR++ GH SSL + D RNS + P RG
Sbjct: 220 CKTSHTVKWEGVWRELGCLARTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALL 279
Query: 312 VSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTS 371
++ G + F++++F+L+ P + + + G+++PIG +S
Sbjct: 280 KVNQELAGYTGGD--VSFIKEDFELQLNKPL-VLDSVFSTSLWGGMLVPIGDKL----SS 332
Query: 372 LPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGD 431
+ +RF+ LGGP+++ GF +GP SE D+LGG+
Sbjct: 333 IADRFY----------LGGPTSVRGFSMHSIGP-----------------QSEGDYLGGE 365
Query: 432 LAVSAFADLSFDLPLR----WFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRS 487
+ L LP R F E H F AGN+ L E + K + R
Sbjct: 366 AYWAGGLHLYTPLPFRPGQGGFGEL-FRTHFFLNAGNLCNLNYGEGPRAHIRKLAECIRW 424
Query: 488 SVGAGIVFPT-NLFRLEVNYCRILKKSSHDHGKNGIQI 524
S GAGIV N+ RLE+NYC + D +G+Q
Sbjct: 425 SYGAGIVLRLGNIARLELNYCIPMGVQRGDRICDGVQF 462
>sp|Q2HJ55|SAM50_BOVIN Sorting and assembly machinery component 50 homolog OS=Bos taurus
GN=SAMM50 PE=2 SV=1
Length = 469
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 122/459 (26%), Positives = 197/459 (42%), Gaps = 56/459 (12%)
Query: 79 VHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS- 137
V V G +TKD +I E+ + A + E+++ ++ KL L F V++ +D+
Sbjct: 47 VQHVHFDGLGRTKDDIIMYEIRDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 106
Query: 138 -GPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASL 196
G LP +V +V E + L+G T G + S V G LK N G +
Sbjct: 107 QGDDALPNGLDVTFEVTELRR-LTGSYNTMV-GNNEGSMVLG-LKLPNLLGRAEKVTFQF 163
Query: 197 AYGFDRSAEVSAGV--YLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGLFSI- 253
+YG + E S G+ + P+ + ++ + +SS +E G+S +S
Sbjct: 164 SYG---TKETSYGLSFFKPQPGNFDRNFSVNLY-KVTGQFPWSSLRETDRGVS-AEYSFP 218
Query: 254 ---RHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA 310
H + + WR L S ++S VR++ GH SSL ++ D RNS + P RG
Sbjct: 219 TWKTSHTVKWEGVWRELGCLSRVASFAVRKESGHSLKSSLSHSMVIDSRNSSILPKRGAL 278
Query: 311 FVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMST 370
++ G + FL+++F+L+ T + + G+++P+G +
Sbjct: 279 LKVNQELAGYTGGD--VSFLKEDFELQLNKQL-ILDTVFSASLWGGMLVPMGDK----PS 331
Query: 371 SLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGG 430
S+ +RF+ LGGP+++ GF +GP SE D+LGG
Sbjct: 332 SIADRFY----------LGGPTSVRGFSMHSVGP-----------------QSEGDYLGG 364
Query: 431 DLAVSAFADLSFDLPLR----WFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTR 486
+ + L LP R F E H F AGN+ L E + K + R
Sbjct: 365 EAYWAGGLHLYTPLPFRPGQGGFGEL-FRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIR 423
Query: 487 SSVGAGIVFPT-NLFRLEVNYCRILKKSSHDHGKNGIQI 524
S GAGIV N+ RLE+NYC + D +G+Q
Sbjct: 424 WSYGAGIVLRLGNIARLELNYCVPMGVQRGDRICDGVQF 462
>sp|Q10478|SAM50_SCHPO SAM50-like protein SPAC17C9.06 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC17C9.06 PE=3 SV=1
Length = 475
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/471 (24%), Positives = 185/471 (39%), Gaps = 61/471 (12%)
Query: 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNAT------TMQEIIQAANIINYKLREL 125
N +P+ + + V G T+ I L + + ++ E + A L
Sbjct: 39 NSTLPVGISSIRVTGAHHTRPSFIRKVLKTCLDTSKPAKSRSLLETLNAIQETTGNLMAF 98
Query: 126 ECFDSVEITLDSGPPELPGTSN--VIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYK 183
+++ I +D + G + V IQV E K L + GT G + + V ++ +
Sbjct: 99 NVYETANIKIDRASSSVSGDDDLDVTIQVKE-KPRLYVETGTDV-GNVEGN-VHANVLAR 155
Query: 184 NGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQS 243
N FG +L +++YG + +S P T + +D SS+ +
Sbjct: 156 NVFGGAELLSGNVSYGTRNRSTMSVNFETPVNADPKTRLRFNGHSNLRDNKSISSHDLLT 215
Query: 244 LGLSLGLFSIRHHDL-------VYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKF 296
G++L S++H DL NL WR +T + +S +VR + G SL YT+
Sbjct: 216 KGITL---SLQHQDLWSGEHLLSQNLLWRQVTHLTEYASPSVRLEAGDSLKQSLSYTYTR 272
Query: 297 DKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSG 356
D R+ + PT+G T ++ G FL+ EF + AV R+ +
Sbjct: 273 DTRDHLMIPTKGDYVRQTLELAGFGFLPGDASFLKSEFWGQKAVALNSSRSVSLSLSARI 332
Query: 357 VVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSS 416
L + SL +RF LGG+ S L GF +GP +
Sbjct: 333 GAL---HSLNKKQVSLCDRFMLGGSTS----------LRGFSEDRIGPKD---------- 369
Query: 417 DENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTE----NE 472
RD LGG ++ L F LP + K LFA AG ++ LT
Sbjct: 370 -------GRDSLGGTAYMAFSMSLLFPLP-KVDASKPFRLQLFANAGGLSNLTSPNPCGT 421
Query: 473 YRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQ 523
Y++ L S G G+V+ T R E+N+ + + D G+ G+Q
Sbjct: 422 YKS-----ILSKPCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQ 467
>sp|P46576|SAM50_CAEEL SAM50-like protein gop-3 OS=Caenorhabditis elegans GN=gop-3 PE=2
SV=2
Length = 434
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 116/488 (23%), Positives = 183/488 (37%), Gaps = 105/488 (21%)
Query: 69 RIRNGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECF 128
R + VP V V G TK+ + E+ + + + E++ +++ L+E+
Sbjct: 13 RAKASGVPSIVEAVQFHGVRITKNDALVKEVSELYRSKNLDELVHNSHLAARHLQEVGLM 72
Query: 129 DSVEITLDSGPPELPGTSNVIIQVVETKTPLSG-QIGTYTKGEAKSSTVEGSLKYKNGFG 187
D+ +D+ P G V V E K+ +G + G T G+A S G K G G
Sbjct: 73 DNAVALIDTSPSSNEGYV-VNFLVREPKSFTAGVKAGVSTNGDADVSLNAG--KQSVG-G 128
Query: 188 YGDLWDASLAY-----------------GFDRSAEVSAGVY-----LPRFKGLVTPMTAR 225
G+ + Y G+ + + VSA +Y +P + V A
Sbjct: 129 RGEAINTQYTYTVKGDHCFNISAIKPFLGWQKYSNVSATLYRSLAHMPWNQSDVDENAAV 188
Query: 226 VFLQSQDWLKFSSYKEQSLGLSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHD 285
+ Q W Q L H + N WRTL + ++ +VR Q GH
Sbjct: 189 LAYNGQLW-------NQKL----------LHQVKLNAIWRTLR-ATRDAAFSVREQAGHT 230
Query: 286 FLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFY 345
SL+ D R+ P+ +RG + G+ D+ F++ DL+ A P
Sbjct: 231 LKFSLENAVAVDTRDRPILASRGILARFAQEYAGVFGDAS---FVKNTLDLQAAAP---- 283
Query: 346 RTALNFGISSGVVLPIGRDFLRMSTSLPERFFLG-----GNLSPICSLGGPSALWGFKTR 400
LP+G ++ S + G ++ C LGG + GF
Sbjct: 284 -------------LPLG---FILAASFQAKHLKGLGDREVHILDRCYLGGQQDVRGFGLN 327
Query: 401 GLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDL--PLRWFREKGIHGHL 458
+G V+ D+S LGG +++ L L P F H
Sbjct: 328 TIG-------VKADNS----------CLGGGASLAGVVHLYRPLIPPNMLF------AHA 364
Query: 459 FACAGNVAKLTENEYRNFSLPKFLQST-RSSVGAGIVFP-TNLFRLEVNYCRILKKSSHD 516
F +G+VA + +L + LQ T R S G G+ F ++FRLE+NY LK D
Sbjct: 365 FLASGSVASVHSK-----NLVQQLQDTQRVSAGFGLAFVFKSIFRLELNYTYPLKYVLGD 419
Query: 517 HGKNGIQI 524
G I
Sbjct: 420 SLLGGFHI 427
>sp|C6V5K2|BAMA_NEORI Outer membrane protein assembly factor BamA OS=Neorickettsia
risticii (strain Illinois) GN=bamA PE=3 SV=1
Length = 738
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 112/472 (23%), Positives = 187/472 (39%), Gaps = 85/472 (18%)
Query: 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELEC--FDSVEITL 135
R+ + + GNT+TKD +I E+ N ++ Q + + + + R L FD V I
Sbjct: 333 RIRKINISGNTRTKDTVIRREMLLSEN-----DLYQPSKVADSRRRILNLGFFDEVYIE- 386
Query: 136 DSGPPELPGTSNVIIQVVETKTP-----LSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGD 190
++ G N+I++V + P LSG G+ S VE +L FG D
Sbjct: 387 ---EHKIDG-QNLILEVRVKERPTGTLNLSGGYGSDVGFFGNFSFVENNL-----FGTSD 437
Query: 191 -----LWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLG 245
L ASL G + S E F A VF ++++ YK S+G
Sbjct: 438 RLVVELQKASL--GSNYSMEFQRKRIFDTF----ITAGASVFYKNRNEKANGLYKFSSVG 491
Query: 246 ----LSLGLFSIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNS 301
+S L L Y+L++ + D + +V+ G LS++ Y+ +K ++
Sbjct: 492 GDGSVSYSLRDDLRLHLGYSLSFDKIFDVEGDAPESVKSSAGTKILSAVSYSLFLNKLDN 551
Query: 302 PLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPI 361
P GY + G+ D ++FLR +F V L+ + +G +
Sbjct: 552 YFVPRYGYGVRFGNKFAGIGGD---VKFLRSDFKAGGFVSVFDQSAVLSLIVRAGNIFG- 607
Query: 362 GRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENAD 421
+ + RFFL + + GF G+GP R V D
Sbjct: 608 ---YSGQGVDVANRFFL-------------NEMRGFDNLGIGP----RDVETD------- 640
Query: 422 ASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKL---TENEYRNFSL 478
D LGG+ + A++ +P+R E + F G + + TE Y + +L
Sbjct: 641 ----DALGGNFFILGTAEVQ--VPMRLPVELDLKAAFFYEVGTLTGVDVTTEKVYDSHAL 694
Query: 479 PKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAPL 530
RSSVGAG+V+ + L V+ + L + D K ++ + +P
Sbjct: 695 -------RSSVGAGLVWNSPFGVLRVDVAKALVEGKGDKVKT-VKFGIVSPF 738
>sp|Q9V784|SAM50_DROME SAM50-like protein CG7639 OS=Drosophila melanogaster GN=CG7639 PE=2
SV=2
Length = 443
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 110/469 (23%), Positives = 165/469 (35%), Gaps = 68/469 (14%)
Query: 75 VPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEIT 134
+ RV V V G +T + + D + A+ Q+++ A L EL F V +
Sbjct: 21 ISARVDRVNVSGLLRTHNDYVMRAADGLFKASNFQDLMLEAMSTKSYLHELGIFKDVSVH 80
Query: 135 LD--SGPPELPGTSNVIIQVVETKTPLSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLW 192
+D G P V + E + + G GT S E L N G G+
Sbjct: 81 IDVSRGADASPQGYEVTFKGNEM-SRMMGSAGTEIGQNEGSLRTE--LTIPNILGRGENI 137
Query: 193 DASLAYGFDRSAEVSAGVYLP----RFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSL 248
+Y R+ ++ + P RFK M+ +F Q+ D SS++ ++G L
Sbjct: 138 SLQGSYSSTRANDLQLKFWKPFFHTRFKENRPEMSFSIFRQT-DRFDISSFQTTNIGY-L 195
Query: 249 GLFSIRH-------HDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNS 301
FS H L Y A R + + +R G S L+Y+ +D R+
Sbjct: 196 VDFSAHTMVGVDLTHSLQYENAIRDVGLLNKSVPFAIRDHCGPKLASLLRYSVVYDNRDG 255
Query: 302 PLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPI 361
+ PTRG S + GL + + + VP F F GVV
Sbjct: 256 NVFPTRGIYLKSVNEYCGLGGN---VAYTSSTAHGELNVPL-FAGLVAQFCARVGVVKET 311
Query: 362 GRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENAD 421
+ +T LP +S + GGP L GFK G GP
Sbjct: 312 -----KNTTQLP--------ISSLFYCGGPLTLRGFKFGGAGP----------------- 341
Query: 422 ASERDFLGGDLAVSAFADLSFDLPLRW-FREKGIH--GHLFACAGNVAKLTENEYRNFSL 478
E +G A L LP F+ H H F GN +
Sbjct: 342 VVESTPIGAQSFWCTGAHLWAPLPFAGVFKNLASHFRMHFFYNIGNNNSFST-------- 393
Query: 479 PKFLQSTRSSVGAGIVFP-TNLFRLEVNYCRILKKSSHDHGKNGIQISL 526
++ RS+ G G+ R+E+NYC ++ D NG Q +
Sbjct: 394 ----ENMRSAFGMGLAVKLAERARIELNYCVPVRHQDTDRILNGFQFGI 438
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,888,420
Number of Sequences: 539616
Number of extensions: 9365215
Number of successful extensions: 88601
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 302
Number of HSP's that attempted gapping in prelim test: 66124
Number of HSP's gapped (non-prelim): 12579
length of query: 530
length of database: 191,569,459
effective HSP length: 122
effective length of query: 408
effective length of database: 125,736,307
effective search space: 51300413256
effective search space used: 51300413256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)