Query 009626
Match_columns 530
No_of_seqs 182 out of 1201
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:23:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2602 Predicted cell surface 100.0 1.8E-64 3.9E-69 502.0 24.0 412 78-529 37-456 (457)
2 COG4775 Outer membrane protein 100.0 6.4E-59 1.4E-63 511.7 45.7 412 72-529 339-765 (766)
3 PRK11067 outer membrane protei 100.0 1.5E-51 3.3E-56 469.0 48.5 432 72-529 342-802 (803)
4 TIGR03303 OM_YaeT outer membra 100.0 1.3E-49 2.8E-54 450.3 49.3 412 72-529 317-740 (741)
5 TIGR00992 3a0901s03IAP75 chlor 100.0 4E-44 8.8E-49 397.2 42.8 385 76-529 268-717 (718)
6 COG0729 Outer membrane protein 100.0 3.1E-42 6.6E-47 369.7 29.0 417 40-529 147-593 (594)
7 PLN03138 Protein TOC75; Provis 100.0 1.8E-38 3.8E-43 343.6 35.6 388 72-529 340-795 (796)
8 PF01103 Bac_surface_Ag: Surfa 100.0 5.7E-37 1.2E-41 312.1 34.7 311 184-529 1-322 (323)
9 COG2831 FhaC Hemolysin activat 99.9 9E-21 2E-25 204.3 33.6 378 78-525 149-551 (554)
10 PF03865 ShlB: Haemolysin secr 99.8 4.9E-16 1.1E-20 163.1 34.2 343 98-512 10-383 (404)
11 PF07244 Surf_Ag_VNR: Surface 98.7 3.8E-08 8.3E-13 78.4 7.1 72 77-155 1-78 (78)
12 TIGR03303 OM_YaeT outer membra 97.5 0.0092 2E-07 68.0 22.0 85 72-157 236-321 (741)
13 PRK11067 outer membrane protei 97.3 0.00078 1.7E-08 77.6 8.7 71 76-157 23-93 (803)
14 COG4775 Outer membrane protein 97.1 0.0014 3.1E-08 73.9 8.1 72 75-157 22-93 (766)
15 PLN03138 Protein TOC75; Provis 96.7 0.006 1.3E-07 68.2 9.5 84 67-157 139-226 (796)
16 PF08478 POTRA_1: POTRA domain 96.3 0.0086 1.9E-07 46.1 5.3 68 78-155 2-69 (69)
17 TIGR00992 3a0901s03IAP75 chlor 96.0 0.012 2.6E-07 66.5 6.5 72 78-156 109-180 (718)
18 PF09026 CENP-B_dimeris: Centr 95.9 0.0025 5.3E-08 51.2 0.4 25 47-71 37-61 (101)
19 PF09026 CENP-B_dimeris: Centr 94.3 0.012 2.6E-07 47.4 0.0 13 44-56 31-43 (101)
20 PRK05529 cell division protein 94.2 0.17 3.7E-06 49.8 8.0 74 74-157 58-131 (255)
21 PF08479 POTRA_2: POTRA domain 92.7 0.83 1.8E-05 35.8 8.2 72 78-154 2-75 (76)
22 COG1589 FtsQ Cell division sep 90.3 0.73 1.6E-05 45.8 6.7 71 77-157 60-130 (269)
23 PRK10775 cell division protein 77.4 8.8 0.00019 38.3 7.6 73 74-157 53-128 (276)
24 KOG0943 Predicted ubiquitin-pr 65.2 4.2 9.1E-05 47.2 2.3 13 205-217 1916-1928(3015)
25 PHA02644 hypothetical protein; 64.2 5.8 0.00012 31.2 2.3 13 10-22 65-77 (112)
26 KOG0299 U3 snoRNP-associated p 62.2 4.6 0.0001 42.1 1.8 15 3-17 20-34 (479)
27 COG2831 FhaC Hemolysin activat 61.4 62 0.0013 35.8 10.5 80 73-156 69-149 (554)
28 TIGR00927 2A1904 K+-dependent 60.8 6.4 0.00014 45.2 2.7 11 206-216 1011-1021(1096)
29 PF03115 Astro_capsid: Astrovi 59.4 3.1 6.6E-05 47.2 0.0 15 63-77 710-724 (787)
30 KOG1824 TATA-binding protein-i 58.3 4.6 9.9E-05 46.0 1.1 25 27-51 319-343 (1233)
31 KOG0772 Uncharacterized conser 55.5 7.5 0.00016 41.3 2.0 11 392-402 489-499 (641)
32 KOG1834 Calsyntenin [Extracell 54.7 6.2 0.00013 43.0 1.3 24 10-33 883-907 (952)
33 KOG1307 K+-dependent Ca2+/Na+ 53.5 7.6 0.00016 40.9 1.7 10 207-216 503-512 (588)
34 KOG3130 Uncharacterized conser 52.0 6.6 0.00014 40.3 1.0 15 66-80 310-324 (514)
35 TIGR02876 spore_yqfD sporulati 50.4 61 0.0013 34.0 7.9 65 78-155 104-174 (382)
36 PF07780 Spb1_C: Spb1 C-termin 42.3 45 0.00097 31.8 4.9 43 80-125 65-108 (215)
37 PF05890 Ebp2: Eukaryotic rRNA 38.0 66 0.0014 32.0 5.5 64 58-127 32-101 (271)
38 PF11081 DUF2890: Protein of u 35.5 18 0.00039 33.5 1.0 23 91-114 153-175 (187)
39 KOG0943 Predicted ubiquitin-pr 34.1 28 0.00062 40.9 2.5 6 79-84 1797-1802(3015)
40 KOG4264 Nucleo-cytoplasmic pro 32.4 39 0.00084 36.1 2.9 58 4-61 39-118 (694)
41 KOG1307 K+-dependent Ca2+/Na+ 31.8 38 0.00083 35.8 2.8 10 175-184 501-510 (588)
42 PRK10049 pgaA outer membrane p 31.4 3.3E+02 0.0071 31.4 10.7 12 289-300 735-746 (765)
43 PF14851 FAM176: FAM176 family 28.9 38 0.00083 30.5 2.0 12 90-101 114-125 (153)
44 PF05642 Sporozoite_P67: Sporo 28.4 38 0.00082 36.6 2.1 19 488-506 706-725 (727)
45 PF04147 Nop14: Nop14-like fam 28.3 41 0.00088 39.2 2.6 9 61-69 429-437 (840)
46 KOG2274 Predicted importin 9 [ 28.1 48 0.001 38.0 3.0 19 60-78 967-985 (1005)
47 PF04546 Sigma70_ner: Sigma-70 28.0 42 0.0009 31.9 2.3 15 57-71 74-88 (211)
48 PF05137 PilN: Fimbrial assemb 27.9 2.7E+02 0.0059 21.1 7.3 49 74-136 11-59 (78)
49 PF08595 RXT2_N: RXT2-like, N- 26.5 32 0.0007 30.8 1.1 6 63-68 90-95 (149)
50 KOG3034 Isoamyl acetate-hydrol 26.4 84 0.0018 31.3 4.0 21 51-71 62-82 (308)
51 KOG1999 RNA polymerase II tran 25.6 42 0.00091 38.7 2.0 10 119-128 227-236 (1024)
52 PHA02644 hypothetical protein; 25.3 52 0.0011 25.9 1.9 9 12-20 78-86 (112)
53 PF06898 YqfD: Putative stage 25.2 2.5E+02 0.0054 29.4 7.6 66 78-156 107-179 (385)
54 PF02459 Adeno_terminal: Adeno 22.9 62 0.0013 34.9 2.5 11 89-99 377-387 (548)
55 PRK14574 hmsH outer membrane p 22.5 6.3E+02 0.014 29.5 10.8 12 288-299 791-802 (822)
56 KOG3593 Predicted receptor-lik 22.0 63 0.0014 32.1 2.2 11 9-19 246-256 (355)
57 KOG2897 DNA-binding protein YL 21.8 46 0.00099 34.2 1.2 7 120-126 202-208 (390)
58 PF13505 OMP_b-brl: Outer memb 21.6 4.6E+02 0.0099 22.5 7.8 46 483-528 127-174 (176)
59 PF05340 DUF740: Protein of un 21.4 64 0.0014 35.2 2.3 13 499-512 584-596 (603)
60 KOG3871 Cell adhesion complex 20.4 37 0.0008 34.6 0.3 13 59-71 129-141 (449)
No 1
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=100.00 E-value=1.8e-64 Score=502.01 Aligned_cols=412 Identities=45% Similarity=0.729 Sum_probs=374.1
Q ss_pred EEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcC--CCCCCCCceEEEEEEEEe
Q 009626 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDS--GPPELPGTSNVIIQVVET 155 (530)
Q Consensus 78 ~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~--~~~~~~~~v~l~v~V~E~ 155 (530)
+|++|+|.|+.+||+++|++++...-.....++++.+++++..+|+++++|+.|.+.++. ++++.|+..+|++.|+|.
T Consensus 37 ~v~~V~v~Gl~~Tkdd~I~k~v~~~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p~~~~Vt~~v~E~ 116 (457)
T KOG2602|consen 37 RVDHVIVSGLERTKDDFIMKEVDLVFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALPGGLVVTFLVTEP 116 (457)
T ss_pred eeeEEEeccccccchHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCCCceeEEEEeeec
Confidence 899999999999999999999977666667899999999999999999999999999997 566788899999999999
Q ss_pred cCCceeeeeE-EeeCCccceEEEEEEEEecCCCCccEEEEEEEEeeeeeeEEEEEEeeeeecCCCCcceEEEEeeecccc
Q 009626 156 KTPLSGQIGT-YTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL 234 (530)
Q Consensus 156 ~~~~~g~~g~-~~s~~~~~~~~~~~~~~~Nl~G~G~~l~~~~~~g~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~ 234 (530)
++ +++..|. .++ ....+.+.+.++|++|+|+.|+.++.|+......++++|..|++.+...++.....+..+||.
T Consensus 117 kr-~tg~~GT~~gn---~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~~~~~~~~~~~~~~~~d~~ 192 (457)
T KOG2602|consen 117 KR-LTGSTGTDVGN---REGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFHGLKTPFSSFSIFRTQDWM 192 (457)
T ss_pred ch-heeeccccccC---CCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccCCCCcchhhhhhhhhhccc
Confidence 86 6777774 222 345788889999999999999999999977678899999999999888888888888889999
Q ss_pred ccccceEEEEEEEEEEcc----cceEEEEEEEEEEEcCCCCCCCcHHHHHHhCCcceeeeEEEEEEeCCCCCCCCCceee
Q 009626 235 KFSSYKEQSLGLSLGLFS----IRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYA 310 (530)
Q Consensus 235 ~~~s~~~~~~g~~~~l~~----~~~~~l~~~~~~~~~~~~~~~~s~~i~~~~g~~~~~sl~~~~~~d~rd~~~~Pt~G~~ 310 (530)
+++++++...|+++.+.. .+.|.+.|+..||++..+++.++.+|+.+.|+.++++|++++++|+||..+.||+|++
T Consensus 193 ~~ss~d~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~qaG~~L~s~L~~tfv~D~Rd~~~~ptrG~~ 272 (457)
T KOG2602|consen 193 KWSSLDETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRRQAGHSLKSSLSYTFVFDKRDSSIIPTRGIL 272 (457)
T ss_pred ccccccccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHHHhhHHHHHhhcceEEEeccCCcccccccce
Confidence 999999999999998852 3479999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeecCCCcccceeeeeEeeeEEEEEecccceEEEEEEEEEEEeecCCCcccCCCCCCcccccCCCCCCcccCCC
Q 009626 311 FVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGG 390 (530)
Q Consensus 311 ~~~~~~~~glg~~~~~~~f~k~~~~~~~~~~l~~~~~~l~~~~~~G~i~~~~~~~~~~~~p~~drF~lGg~~~~~~~~gG 390 (530)
+..+.|++|++++ +.|+|.+++++...||. ...+|++++++|++.++++ +++++.||||+| |
T Consensus 273 ~k~~~e~~g~~~~---~sf~k~e~~lq~avpl~-~~~~~s~~~~~G~l~~~~~----~~v~I~dRFylG----------G 334 (457)
T KOG2602|consen 273 LKSTSELAGLFGD---VSFLKSELDLQKAVPLG-FDATLSFSFSGGVLKPLGS----RPVSIADRFYLG----------G 334 (457)
T ss_pred eEeehhhcCcccc---hhhhhhhhhheeccccc-cceeeEeeEeeeeeecCCC----CccchhhhhccC----------C
Confidence 9999999999887 89999999999999998 4589999999999999987 799999999999 8
Q ss_pred CCcccCccCCCCCCCCCCcCCCCCCCCCCcCCCCCcccCceeEEEeceEEEEeCCcccccCCCeeEEEEeecccccccCc
Q 009626 391 PSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTE 470 (530)
Q Consensus 391 ~~slRGf~~~~lGP~~~~~~~~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~~~~~~~~~~~F~DaG~v~~~~~ 470 (530)
+++||||+.++|||++ .++++||+.++.+++.|.+|+|+++....++++|+|+++|++.+..+
T Consensus 335 ps~lRGFk~~giGP~~-----------------~~~~lGG~a~~a~~~~L~~~lP~~~~~~~~fr~h~F~naG~l~~l~s 397 (457)
T KOG2602|consen 335 PSDLRGFKTRGIGPKD-----------------EGDFLGGDAFVAAGAHLYFPLPFAKGFKSGFRGHVFANAGNLANLSS 397 (457)
T ss_pred cccccccccCCcCCCC-----------------CCcccCCceeeEeeeEecccCCcccccccceeeEEEeccccccccCc
Confidence 9999999999999997 46899999999999999999999876667899999999999999876
Q ss_pred ccccCCChhhhccCceeeeeEEEEEeeC-ceEEEEEEEEeccccCCCCCcccEEEeccCC
Q 009626 471 NEYRNFSLPKFLQSTRSSVGAGIVFPTN-LFRLEVNYCRILKKSSHDHGKNGIQISLSAP 529 (530)
Q Consensus 471 ~~~~~~~~~~~~~~~~~s~G~Glr~~tp-~g~l~ldya~pl~~~~~d~~~~gf~f~~g~~ 529 (530)
+..+...+++..++++|+|+||.+++| .++++|+||+|++++.+|+...||||++|..
T Consensus 398 -~~~~~~~~kl~e~~r~S~G~Glv~~~~~~aR~ELNy~~pl~~~e~D~~~~GfqfG~g~~ 456 (457)
T KOG2602|consen 398 -EAPKNTIPKLLETFRTSVGAGLVVPTPRAARLELNYCLPLKKQENDRIRKGFQFGAGID 456 (457)
T ss_pred -ccccchhhhhhhhhccccccceEEecchhhceeeeeEEEeeeeccchhhcceEeccccc
Confidence 333445667789999999999999999 9999999999999999999999999999864
No 2
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.4e-59 Score=511.69 Aligned_cols=412 Identities=26% Similarity=0.342 Sum_probs=352.3
Q ss_pred CCCCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEE
Q 009626 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQ 151 (530)
Q Consensus 72 ~~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~ 151 (530)
++|.+++|.+|.|.||++|+|+||+|++++++|++|++++++++ ++||++||+|++|+|...+++ .++.|+|+|+
T Consensus 339 ~~g~~~~V~~i~i~gn~rT~D~VIrRE~~~~eGd~fn~~~v~~~---~~rL~~lgyF~~V~i~~~~~~--~~~~vdvvv~ 413 (766)
T COG4775 339 DEGDRVYVRRIRIRGNTRTKDYVIRREMRLKEGDVFNRKLVQRG---KRRLRRLGYFESVNIDTAPGS--GSDQVDVVVD 413 (766)
T ss_pred EcCCceeeeeeeecCCCccccHHhhhhhhcCCcchhhHHHHHHH---HHHHHhcCCceeeEEEeccCC--CCCeEEEEEE
Confidence 47999999999999999999999999999999999999999996 999999999999999999763 4558999999
Q ss_pred EEEecCC-ceeeeeEEeeCCccceEEEEEEEEecCCCCccEEEEEEEEeeeeeeEEEEEEeeeeecCCCCcceEEEEeee
Q 009626 152 VVETKTP-LSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQS 230 (530)
Q Consensus 152 V~E~~~~-~~g~~g~~~s~~~~~~~~~~~~~~~Nl~G~G~~l~~~~~~g~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 230 (530)
|+|++++ +.+++| |++. +++.+.++++..|++|.|+.+++.+++|.. .+.+.++|+.||+...++.+++++++..
T Consensus 414 VkE~~Tgsi~~G~G-y~s~--~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~-~~~~~l~ft~P~f~~~~~slg~~~f~~~ 489 (766)
T COG4775 414 VKERSTGSINFGLG-YGSD--SGLSGFASLSERNFLGTGQSLSLNANLGDK-QTSYSLSFTDPYFLDDRVSLGFNLFSNR 489 (766)
T ss_pred EEecCceeEEeccc-ccCC--CceEEEEEEEEeecCccccEEEEEEEeccc-eEEEEEEEecccccCCCceeEEEeEeee
Confidence 9999865 445555 8885 689999999999999999999999999999 7899999999999999999999999877
Q ss_pred ccc--cccc--cceEEEEEEEEEEc----ccceEEEEEEEEEEEcCCCCC-----CCcHHHHHHhCCcceeeeEEEEEEe
Q 009626 231 QDW--LKFS--SYKEQSLGLSLGLF----SIRHHDLVYNLAWRTLTDPSH-----MSSNTVRRQLGHDFLSSLKYTFKFD 297 (530)
Q Consensus 231 ~~~--~~~~--s~~~~~~g~~~~l~----~~~~~~l~~~~~~~~~~~~~~-----~~s~~i~~~~g~~~~~sl~~~~~~d 297 (530)
.+. ..+. +|+..++|+.+.+. +++++.++|.+.++.+..... ..+.....+.+...+++++++++||
T Consensus 490 ~~~~~~~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~tyD 569 (766)
T COG4775 490 YDTFDADTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPPDEYASLGVKLQGGKSDLSSLSLGWTYD 569 (766)
T ss_pred ecccccccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCccccccccccccccCcceeEEEEEeEEEc
Confidence 631 1223 68888888887763 578999999999998874432 1222333345567889999999999
Q ss_pred CCCCCCCCCceeeEEEEEEeeecCCCcccceeeeeEeeeEEEEEecccc-eEEEEEEEEEEEeecCCCcccCCCCCCccc
Q 009626 298 KRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFYR-TALNFGISSGVVLPIGRDFLRMSTSLPERF 376 (530)
Q Consensus 298 ~rd~~~~Pt~G~~~~~~~~~~glg~~~~~~~f~k~~~~~~~~~~l~~~~-~~l~~~~~~G~i~~~~~~~~~~~~p~~drF 376 (530)
+||++++||+|++++.+.+++++|++ ..|+|+++++++|+||. +. +++.++..+|++.++++ ..+|++|+|
T Consensus 570 ~rD~~~~Pt~G~~~~~~~e~~~~Ggd---~~~~K~~~~~~~Y~~l~-~~~~~l~~~~~~g~~~~~g~----~~~p~~e~F 641 (766)
T COG4775 570 TRDNALFPTKGSYLSLTQEVAGLGGD---IKYYKLELDGSKYYPLT-DYIFTLSLRGEVGYGKGYGT----KLLPIYERF 641 (766)
T ss_pred CCCCcCCCCCCeEEeeeeEEeccCCc---ceEEEEEEEEEEEEEcc-cccEEEEEEEEEEEeeccCC----cccccccce
Confidence 99999999999999999999999987 99999999999999997 44 58999999999999987 359999999
Q ss_pred ccCCCCCCcccCCCCCcccCccCCCCCCCCCCcCCCCCCCCCCcCCCCCcccCceeEEEeceEEEEeCCcccccCCCeeE
Q 009626 377 FLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHG 456 (530)
Q Consensus 377 ~lGg~~~~~~~~gG~~slRGf~~~~lGP~~~~~~~~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~~~~~~~~~ 456 (530)
++| |.++||||+.++|||++. ..+++||+.++.+++|++||+|... .. ++++
T Consensus 642 ~~G----------G~~svRGf~~~~igp~~~----------------~~~~~GG~~~~~~S~El~fPl~~~~-~~-~~r~ 693 (766)
T COG4775 642 YLG----------GSNSVRGFESGGLGPKDG----------------YTDALGGTSYFVASAELRFPLPKVI-GS-GVRG 693 (766)
T ss_pred eeC----------CCccccceecCCcCCccc----------------cccccCceEEEEEEEEEEeecCCCC-Cc-ceEE
Confidence 999 899999999999999974 2478999999999999999998642 22 6999
Q ss_pred EEEeecccccccCcccccCCChhhhccCceeeeeEEEEEeeCceEEEEEEEEeccccCCCCCcccEEEeccCC
Q 009626 457 HLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAP 529 (530)
Q Consensus 457 ~~F~DaG~v~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~~tp~g~l~ldya~pl~~~~~d~~~~gf~f~~g~~ 529 (530)
++|+|+|.+|+.........+......+++.|+|+||+|.+|+|||+++||+|+.+.++|.+++ |||+||+.
T Consensus 694 ~lF~D~G~v~~~~~~~~~~~~~~~~~~~~r~S~Gvgl~w~sP~gPlr~d~a~pi~~~~~D~~q~-F~F~iG~~ 765 (766)
T COG4775 694 ALFFDAGSVWNTGTDPSTVRNFYGSGSELRASAGVGLRWASPLGPLRFDYAFPIKKKEGDDTQR-FQFGLGTR 765 (766)
T ss_pred EEEEEcccccccCcccccccCCcCcCcceeEEeeeeEEEecCCCcEEEEeecccccCCCCccee-EEEEcccc
Confidence 9999999999964110001122222236899999999999999999999999999999998777 99999975
No 3
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=100.00 E-value=1.5e-51 Score=469.03 Aligned_cols=432 Identities=17% Similarity=0.225 Sum_probs=334.0
Q ss_pred CCCCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEE
Q 009626 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQ 151 (530)
Q Consensus 72 ~~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~ 151 (530)
++|++++|++|+|.|+.++++++|+|++.+++|++|+.+.|+++ +++|.++|+|+.|.+.+...+ ..++.++|+|.
T Consensus 342 ~eG~~y~ig~I~i~Gn~~~~~~~l~r~l~~~~G~~~~~~~l~~~---~~~L~~~g~F~~V~~~~~~~~-~~~~~v~l~v~ 417 (803)
T PRK11067 342 DAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQG---KERLNRLGFFETVDVDTQRVP-GSPDQVDVVYK 417 (803)
T ss_pred eeCCeEEEEEEEEECCccccchhhhhheeccccccCCHHHHHHH---HHHHHhcCCcccCccccccCC-CCCCeEEEEEE
Confidence 68999999999999999999999999999999999999999996 999999999999999987533 34578999999
Q ss_pred EEEecCC-ceeeeeEEeeCCccceEEEEEEEEecCCCCccEEEEEEEEeeeeeeEEEEEEeeeeecCCCCcceEEEEeee
Q 009626 152 VVETKTP-LSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQS 230 (530)
Q Consensus 152 V~E~~~~-~~g~~g~~~s~~~~~~~~~~~~~~~Nl~G~G~~l~~~~~~g~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 230 (530)
|+|++++ +.+++| |+++ .++.+.++|+++|+||.|+++++.+..+.. .+.+.++|..||+...++.++.++++..
T Consensus 418 v~e~~~~~~~~g~g-y~s~--~g~~~~~~~~~~N~~G~G~~l~l~~~~s~~-~~~~~l~~~~P~~~~~~~~~~~~~~~~~ 493 (803)
T PRK11067 418 VKERNTGSFNFGVG-YGTE--SGVSFQAGVQQDNWLGTGNSVGINGTKNDY-QTYAELSVTDPYFTVDGVSLGGRIFYND 493 (803)
T ss_pred EEEccCCcEEEEee-ecCc--CCEEEEEEEEecccCCcCcEEEEEEEeccc-eEEEEEEEeCCcCcCCCceEEEEEEEEe
Confidence 9999865 455666 8885 578999999999999999999999999877 6788999999999877778777776654
Q ss_pred cccc--ccccceEEEEEEEEEEc----ccceEEEEEEEEEEEcCCCCCCCc-HHHHHHhC-----------CcceeeeEE
Q 009626 231 QDWL--KFSSYKEQSLGLSLGLF----SIRHHDLVYNLAWRTLTDPSHMSS-NTVRRQLG-----------HDFLSSLKY 292 (530)
Q Consensus 231 ~~~~--~~~s~~~~~~g~~~~l~----~~~~~~l~~~~~~~~~~~~~~~~s-~~i~~~~g-----------~~~~~sl~~ 292 (530)
.... ...+|+.+..|+++.+. ..+.+.+++.+.+.++........ .......+ .....++.+
T Consensus 494 ~~~~~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (803)
T PRK11067 494 FEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENPSSDSDNSFKTDDFTFNY 573 (803)
T ss_pred ccccccccccceeeEEEEEEEEEEEecCceEEEEEEEEEEEEeecCCcchhHHHHHHHcCCccccccccccceEEEEEEE
Confidence 3321 23467777777776653 456777777777766653211110 01111111 123457889
Q ss_pred EEEEeCCCCCCCCCceeeEEEEEEeeecCCCcccceeeeeEeeeEEEEEecc-cceEEEEEEEEEEEeecCCCcccCCCC
Q 009626 293 TFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGF-YRTALNFGISSGVVLPIGRDFLRMSTS 371 (530)
Q Consensus 293 ~~~~d~rd~~~~Pt~G~~~~~~~~~~glg~~~~~~~f~k~~~~~~~~~~l~~-~~~~l~~~~~~G~i~~~~~~~~~~~~p 371 (530)
++++|++|++++|++|+++.++.+.+.++++ .+|.|+.+++++|+||.. .++++.+++++|++..++. ..+|
T Consensus 574 ~~~~d~~D~~~~Pt~G~~~~~~~~~~~~gs~---~~f~k~~~~~~~y~~l~~~~~~~l~~r~~~G~~~~~~~----~~lP 646 (803)
T PRK11067 574 GWTYNNLDRGYFPTAGNRVNLTGKVTIPGSD---NEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGLGG----KEMP 646 (803)
T ss_pred EEEEecCcCCCCCCCCeeEEEEEEEEeeccc---ceEEEEEEEEEEEEEecCCCcEEEEEEEEeeeeecCCC----CCCC
Confidence 9999999999999999999999988877766 899999999999999972 2478889999999877654 4699
Q ss_pred CCcccccCCCCCCcccCCCCCcccCccCCCCCCCCCCcCCCC--CCC-CCCcCCCCCcccCceeEEEeceEEEEeCCccc
Q 009626 372 LPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRG--DSS-DENADASERDFLGGDLAVSAFADLSFDLPLRW 448 (530)
Q Consensus 372 ~~drF~lGg~~~~~~~~gG~~slRGf~~~~lGP~~~~~~~~~--~~~-~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~ 448 (530)
+++|||+| |.++||||.+++|||++....... -+. .+.+....++++||+.++.+++|+++|+|+..
T Consensus 647 ~~erF~lG----------G~~svRGy~~~siGp~~~~~~~~~~~~~~~~~~~~~~~~~~iGG~~~~~~s~E~~~p~~~~~ 716 (803)
T PRK11067 647 FYENFYAG----------GSSTVRGFQSNTIGPKAVYYPGQASNYTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFIS 716 (803)
T ss_pred hhheeccC----------CCCcCCcccCCCcCCccccccccccccccccccccCCCCCCCCCeEEEEEeEEEEEeCCccc
Confidence 99999999 889999999999999863110000 000 00011123568999999999999999987631
Q ss_pred c-cCCCeeEEEEeecccccccCccccc---CCChhhh--ccCceeeeeEEEEEeeCceEEEEEEEEeccccCCCCCcccE
Q 009626 449 F-REKGIHGHLFACAGNVAKLTENEYR---NFSLPKF--LQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGI 522 (530)
Q Consensus 449 ~-~~~~~~~~~F~DaG~v~~~~~~~~~---~~~~~~~--~~~~~~s~G~Glr~~tp~g~l~ldya~pl~~~~~d~~~~gf 522 (530)
. ...+|++++|+|+|+||+....... .....++ ..++++|+|+||||.||+||||||||+||++.++|...+ |
T Consensus 717 ~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~G~G~r~~sPiGPirld~a~pl~~~~~d~~~~-~ 795 (803)
T PRK11067 717 DKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQ-F 795 (803)
T ss_pred cccCCCEEEEEEEEeeecccCCcccccccccccccCcCCCCcEEEEEeEEEEEeCCCCCeEEEEEEeCCCCCCCceeE-E
Confidence 0 1247999999999999986321000 0000111 247999999999999999999999999999999888777 9
Q ss_pred EEeccCC
Q 009626 523 QISLSAP 529 (530)
Q Consensus 523 ~f~~g~~ 529 (530)
||+||+.
T Consensus 796 ~fsiG~~ 802 (803)
T PRK11067 796 QFNIGKT 802 (803)
T ss_pred EEecccc
Confidence 9999985
No 4
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=1.3e-49 Score=450.29 Aligned_cols=412 Identities=25% Similarity=0.354 Sum_probs=340.5
Q ss_pred CCCCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEE
Q 009626 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQ 151 (530)
Q Consensus 72 ~~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~ 151 (530)
++|++++|++|+|.|+.+|++++|++++++++|++++.+.++++ +++|.++|+|+.|.+.+.+. ..++.++|+|.
T Consensus 317 ~eg~~~~i~~i~i~g~~~t~~~~i~~~~~~~~G~~~~~~~l~~~---~~~L~~lg~f~~v~~~~~~~--~~~~~~~v~i~ 391 (741)
T TIGR03303 317 DPGKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRS---KRRLERLGYFETVNIETVPV--GSPDQVDLNVK 391 (741)
T ss_pred ccCCeEEEEEEEEECCCccccceeehhhccCcccccCHHHHHHH---HHHHHhCCCCceeeeeecCC--CCCCEEEEEEE
Confidence 57899999999999999999999999999999999999999995 99999999999999999864 46788999999
Q ss_pred EEEecCC-ceeeeeEEeeCCccceEEEEEEEEecCCCCccEEEEEEEEeeeeeeEEEEEEeeeeecCCCCcceEEEEeee
Q 009626 152 VVETKTP-LSGQIGTYTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQS 230 (530)
Q Consensus 152 V~E~~~~-~~g~~g~~~s~~~~~~~~~~~~~~~Nl~G~G~~l~~~~~~g~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 230 (530)
|+|++++ +.++++ |++. +++.+.++++++|+||+|+++++.+.++.. .+.+.++|+.|++...++.+.+++++..
T Consensus 392 v~e~~~~~~~~~~g-~~~~--~~~~~~~~~~~~Nl~G~g~~l~~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 467 (741)
T TIGR03303 392 VKEQPTGSISFGVG-YGSS--SGLSFNASISERNFLGTGNRLSLSANKSSL-STSYSLSFTDPYFTDDGVSLGFSIFYSE 467 (741)
T ss_pred EEEccccEEEEeee-ecCC--CceEEEEEEEEecccccccEEEEEEEeccc-eEEEEEEEECCCCcCCCeEEEEEEEEEE
Confidence 9998754 455566 7763 689999999999999999999999999987 6789999999999988888888887766
Q ss_pred cccc--ccccceEEEEEEEEEE----cccceEEEEEEEEEEEcCCCCCC---CcHHHHHHhCCcceeeeEEEEEEeCCCC
Q 009626 231 QDWL--KFSSYKEQSLGLSLGL----FSIRHHDLVYNLAWRTLTDPSHM---SSNTVRRQLGHDFLSSLKYTFKFDKRNS 301 (530)
Q Consensus 231 ~~~~--~~~s~~~~~~g~~~~l----~~~~~~~l~~~~~~~~~~~~~~~---~s~~i~~~~g~~~~~sl~~~~~~d~rd~ 301 (530)
.+.. ....|..++.++++.+ ...+.+.+++.+.+.++...... ....+..+.+.....++.++++||+||+
T Consensus 468 ~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rD~ 547 (741)
T TIGR03303 468 TDRNYKNFSDYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKNSSDSDSSASYFIKEQGGKFIDSSLSYGWSYDTLDS 547 (741)
T ss_pred cccccccccCceeEEEEEEEEEEEEecCceEEEEEEEEEEEEEecCCCcchhHHHHHHHhCCceEEEEEEEEEEEeCCcC
Confidence 5321 2345677777766654 35678888888887777542111 1122333456677889999999999999
Q ss_pred CCCCCceeeEEEEEEeeecCCCcccceeeeeEeeeEEEEEeccc--ceEEEEEEEEEEEeecCCCcccCCCCCCcccccC
Q 009626 302 PLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQEFDLRFAVPFGFY--RTALNFGISSGVVLPIGRDFLRMSTSLPERFFLG 379 (530)
Q Consensus 302 ~~~Pt~G~~~~~~~~~~glg~~~~~~~f~k~~~~~~~~~~l~~~--~~~l~~~~~~G~i~~~~~~~~~~~~p~~drF~lG 379 (530)
+++|++|+++++.+++++++++ .+|.|+.+++++|+||. . +++|++++++|++.++++ ..+|++++|++|
T Consensus 548 ~~~P~~G~~~~~~~~~~~~g~~---~~f~k~~~~~~~y~~l~-~~~~~~l~~~~~~g~~~~~~~----~~~p~~e~f~lG 619 (741)
T TIGR03303 548 GYFPTKGSIQRLSQEFAGPGGD---LKYYKLTYDSEYYIPLS-KEDDWVLSLRGRLGYGNGYGG----KDLPFYERFYAG 619 (741)
T ss_pred CCCCCCCcEEEEEEEEeeecCC---ceEEEEEEEEEEEEEcC-CCCcEEEEEEEEeeEEEcCCC----CccChhHeEecC
Confidence 9999999999999999887766 89999999999999997 4 499999999999988764 469999999999
Q ss_pred CCCCCcccCCCCCcccCccCCCCCCCCCCcCCCCCCCCCCcCCCCCcccCceeEEEeceEEEEeCCcccccCCCeeEEEE
Q 009626 380 GNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLF 459 (530)
Q Consensus 380 g~~~~~~~~gG~~slRGf~~~~lGP~~~~~~~~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~~~~~~~~~~~F 459 (530)
|+++||||..++|||++.. +..+.+||+.++.+++|+++|++.. +...++++++|
T Consensus 620 ----------G~~svRGy~~~~igp~~~~--------------~~~~~~gG~~~~~~~~Elr~pl~~~-~~~~~~~~~~F 674 (741)
T TIGR03303 620 ----------GIGSVRGFESNGIGPRDIN--------------DSGDSIGGNAMATANVELIFPLPFL-PEDNGLRGSVF 674 (741)
T ss_pred ----------CCCcCCCccCCCcCCCccC--------------CCCCCCCceEEEEEEEEEEEcCCCC-CccCcEEEEEE
Confidence 8899999999999998631 1246799999999999999988521 12346999999
Q ss_pred eecccccccCcccccCCChhhhccCceeeeeEEEEEeeCceEEEEEEEEeccccCCCCCcccEEEeccCC
Q 009626 460 ACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAP 529 (530)
Q Consensus 460 ~DaG~v~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~~tp~g~l~ldya~pl~~~~~d~~~~gf~f~~g~~ 529 (530)
+|+|+||........ . .....+++.|+|+||||.||+|||+|+||+||...++|...+ |||+||..
T Consensus 675 ~D~G~v~~~~~~~~~--~-~~~~~~~~~s~G~Glr~~tp~gpi~ld~a~~l~~~~~d~~~~-~~f~~G~~ 740 (741)
T TIGR03303 675 FDAGNVWGTDQKKEG--D-YSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQS-FQFSIGTT 740 (741)
T ss_pred EEeeecccCCccccc--c-cCCCCcEEEEEEEEEEEECCcCcEEEEEEEeCCCCCCCceEE-EEEeCccc
Confidence 999999997531000 0 011367999999999999999999999999999988887655 99999975
No 5
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=100.00 E-value=4e-44 Score=397.19 Aligned_cols=385 Identities=16% Similarity=0.120 Sum_probs=284.0
Q ss_pred CEEEEEEEEECCc---ccCHHHHHHHhh--hhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEE
Q 009626 76 PLRVHDVIVKGNT---KTKDCLIEAELD--AIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVII 150 (530)
Q Consensus 76 ~~~i~~V~i~G~~---~tk~~vI~r~l~--~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v 150 (530)
.++|..|.+.|+. +|++.+|+|+++ +++|++|+.+.++++ +++|.++++|++|.+.+.+.. ..++.++|.|
T Consensus 268 ~I~V~~i~~~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~~Le~~---~~rL~~lg~F~~V~V~~~p~~-~~~g~v~V~V 343 (718)
T TIGR00992 268 NLQIQFFDKLGNVVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTA---LQNINSLGLFSNIEVNPRPDE-MNEGEIIVEI 343 (718)
T ss_pred EEEEEEecccCccccCccchHHHHHHHHhccCCCCcCCHHHHHHH---HHHHHcCCCcccceeeccCCC-CCCCeEEEEE
Confidence 4444444445775 899999999999 999999999999996 999999999999999998642 2678999999
Q ss_pred EEEEecCC-c------eeeeeE----EeeCCccceEEEEEEEEecCCCCccEEEEEEEEe-----eeeeeEEEEEEeeee
Q 009626 151 QVVETKTP-L------SGQIGT----YTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYG-----FDRSAEVSAGVYLPR 214 (530)
Q Consensus 151 ~V~E~~~~-~------~g~~g~----~~s~~~~~~~~~~~~~~~Nl~G~G~~l~~~~~~g-----~~~~~~~~~~~~~P~ 214 (530)
+|+|+++. + +..+|. |++ ..++.+.++|+++||||+|+++.++++.+ .. .+.+.++|+.||
T Consensus 344 ~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss--~~G~~g~i~~~~rNl~G~g~~l~~~~~~s~~~~~~~-~~~~~lsy~~P~ 420 (718)
T TIGR00992 344 KLKELEQKSAEVSTEWSIVPGRGGRPTLA--SSQPGGTITFEHRNLQGLNRSLGGSVTTSNFLNPQD-DLLFKVEYTHPY 420 (718)
T ss_pred EEEECCCCceeeeccccccccCCCccccc--ccceeEEeeEEeccCcccCcEEEEEEEeccccCCCc-ceEEEEEEecCc
Confidence 99998753 1 111221 233 35788999999999999999999999998 55 688999999999
Q ss_pred ecCC----CCcceEEEEeeecccc---------ccccceEEEEEEEEEEc----ccceEEEEE------EEEEEEcCCCC
Q 009626 215 FKGL----VTPMTARVFLQSQDWL---------KFSSYKEQSLGLSLGLF----SIRHHDLVY------NLAWRTLTDPS 271 (530)
Q Consensus 215 ~~~~----~~~~~~~~~~~~~~~~---------~~~s~~~~~~g~~~~l~----~~~~~~l~~------~~~~~~~~~~~ 271 (530)
+.+. ++.+.++++..+.... .+.+|...+.|+++++. ..+...++| .+...++.+..
T Consensus 421 i~~~~~p~~~s~~~~~f~~~~~~~~~~~~~~~~~~~~y~~~r~G~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (718)
T TIGR00992 421 LDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSIWVDRAGVKANITENFARQSKFTYGLVMEEIFTRDESRHINAN 500 (718)
T ss_pred cCCCCCCccceEEEEEEEeccccccccCCcccccCCCceEEEEEEEEEEeeccCcccccccCeEEEEEeeeeeeeecccc
Confidence 9876 5677777766543211 12357788888877663 222222222 22221111110
Q ss_pred CCC---cHHH--------HHHhCCcceeeeEEEEEEeCCCCCCCCCceeeEEEEEEeee-cCCCcccceeeeeEeeeEEE
Q 009626 272 HMS---SNTV--------RRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGG-LAPDSRCLRFLRQEFDLRFA 339 (530)
Q Consensus 272 ~~~---s~~i--------~~~~g~~~~~sl~~~~~~d~rd~~~~Pt~G~~~~~~~~~~g-lg~~~~~~~f~k~~~~~~~~ 339 (530)
... +..+ ....+.....++.++++||+||++++||+|++++++++.+. ++++ ...|.|+.+++++|
T Consensus 501 g~~~~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t~D~rDn~l~Pt~G~~~~~~~e~~~~~g~~--~~~f~r~~~~~~~y 578 (718)
T TIGR00992 501 GQRSLPSGPISADGPPTTLSGTGVDRMAFLQANITRDNTNFVNGPTVGSRVRFQVDQGLGVGSG--FPFFNRHQLTYTKF 578 (718)
T ss_pred CccccccccccccCCcceecCCCccceEEEEEEEEEecCCCCCCCCcccEEEEEEEeccCcCCC--CceEEEEEEEEEEE
Confidence 000 0000 00123345678999999999999999999999999999875 5555 23699999999999
Q ss_pred EEecc--------cceEEEEEEEEEEEeecCCCcccCCCCCCcccccCCCCCCcccCCCCCcccCccCCCCCCCCCCcCC
Q 009626 340 VPFGF--------YRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQV 411 (530)
Q Consensus 340 ~~l~~--------~~~~l~~~~~~G~i~~~~~~~~~~~~p~~drF~lGg~~~~~~~~gG~~slRGf~~~~lGP~~~~~~~ 411 (530)
+||.. ..++|++++++|++. + .+|++++||+| |.+|||||.+++|||
T Consensus 579 ~pl~~~~~~~~~~~~~vla~r~~~G~~~--g------dlP~~e~F~lG----------G~~SVRGY~~~~lGp------- 633 (718)
T TIGR00992 579 IQLNWVELGAGKSPPPVLVLHGHYGGCV--G------DLPSYDAFILG----------GPYSVRGYNMGELGA------- 633 (718)
T ss_pred EeccccccccccCCCcEEEEEEEeeeEc--C------CCCchhceecC----------CCCcccCccCCcccc-------
Confidence 99852 137999999999876 2 49999999999 889999999999985
Q ss_pred CCCCCCCCcCCCCCcccCceeEEEeceEEEEeCCcccccCCCeeEEEEeecccccccCcccccCCC-hhhhccCceeeee
Q 009626 412 RGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFS-LPKFLQSTRSSVG 490 (530)
Q Consensus 412 ~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~~~~~~~~~~~F~DaG~v~~~~~~~~~~~~-~~~~~~~~~~s~G 490 (530)
|+.++.+++|||||++ ..+ +++|+|+|++|....... +.. ...-...+++|+|
T Consensus 634 ------------------Gr~~~~~s~E~r~Pi~------~~~-g~~F~D~G~~~~s~~~~~-g~~~~~~~~~~~~~s~G 687 (718)
T TIGR00992 634 ------------------ARNIFEATAEIRIPIK------ATH-VYAFVEHGSDLGSSKDVK-GNPTIVYRRPGQGSSYG 687 (718)
T ss_pred ------------------cceeeEEEEEEEEEec------Ccc-EEEEEecccccCcccccC-CCccccccCCCCcccee
Confidence 5889999999999764 136 999999999998653210 000 0000256799999
Q ss_pred EEEEEeeCceEEEEEEEEeccccCCCCCcccEEEeccCC
Q 009626 491 AGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAP 529 (530)
Q Consensus 491 ~Glr~~tp~g~l~ldya~pl~~~~~d~~~~gf~f~~g~~ 529 (530)
+||||.||+||||||| .+...+ |||+||+.
T Consensus 688 vGvR~~sPiGPiRlD~--------~~~~~r-f~F~iG~~ 717 (718)
T TIGR00992 688 AGVKLGLVRAEYAVDH--------NEGTGA-IFFRFGER 717 (718)
T ss_pred EEEEEecCcccEEEEe--------cCCCcE-EEEecccc
Confidence 9999999999999999 122334 99999975
No 6
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.1e-42 Score=369.67 Aligned_cols=417 Identities=18% Similarity=0.177 Sum_probs=314.7
Q ss_pred CCCccccccccCccCCCccchHHHHHHHHHhc----------------CCCCCEEEEEEEEECCcccCHHHHHHHhhhhh
Q 009626 40 DDDLEEDDDAAQPQRKSRVDRPKIENLFRRIR----------------NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIR 103 (530)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~ 103 (530)
.-...-|+..|..+.+.+.+++|..+-+...+ +.|++++++.|.|+|.+++++..|++.+++++
T Consensus 147 ~~~~~~~~n~k~~i~~~~~~~gy~~a~~~~~r~~v~~~~~~a~~~~~~dsG~~y~~g~v~~~g~~r~~~~~~~~~~~~~~ 226 (594)
T COG0729 147 DLNQGTYENAKSSIVRALLRKGYFLARFTKSRLVVDPATHTADVDLNYDSGRRYRFGPVTVEGSQRIDEEYLQNLVPFKY 226 (594)
T ss_pred ccccchhhhhHHHHHHHHHHcCcchhcccccccccccccceEEEEEeecccceEEeCcEEEccceecCHHHHhhccccCC
Confidence 34455677778888888888888877774444 79999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEEecCC-ceeeeeEEeeCCccceEEEEEEEE
Q 009626 104 NATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTP-LSGQIGTYTKGEAKSSTVEGSLKY 182 (530)
Q Consensus 104 G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E~~~~-~~g~~g~~~s~~~~~~~~~~~~~~ 182 (530)
|++|..+.+.++ ++||.++++|++|.|.+...+....+.++|.|.|.|++.. +..++| |+++ .+..+.+.|.+
T Consensus 227 G~~Y~~~~l~~~---~~rl~~~~~F~sv~v~~~~~~~~~~~~~pv~v~~~~rk~~~~~lG~g-yst~--~G~~~~~~w~~ 300 (594)
T COG0729 227 GLPYDPEDLAEL---NQRLRQTGYFSSVVVQPADKQAGPDGLLPVKVSVSERKENTFELGVG-YSTD--VGAGLEAGWEK 300 (594)
T ss_pred CCcCCHHHHHHH---HHHHhhcCceeeEEEecCccccCcCceeceEEEecccccceEEeeeE-Eecc--ccccceEEeee
Confidence 999999999995 9999999999999999875422233457999999999865 556666 8885 78899999999
Q ss_pred ecCCCCccEEEEEEEEeeeeeeEEEEEEeeeeecCC-CCcceEEEEeeeccccccccceEE--EEE--EEE--EE----c
Q 009626 183 KNGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGL-VTPMTARVFLQSQDWLKFSSYKEQ--SLG--LSL--GL----F 251 (530)
Q Consensus 183 ~Nl~G~G~~l~~~~~~g~~~~~~~~~~~~~P~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~--~~g--~~~--~l----~ 251 (530)
+|+||+||++.....++.. .+.+...|.+|.++.+ .....+..++...+ .+.+. .++ ++. ++ +
T Consensus 301 ~~~~~~~~~l~~~~~is~~-~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~-----~~~t~~~~~~~~l~~~~~~~~~~~ 374 (594)
T COG0729 301 RNLFGRGHSLRIESEISAP-LQTLEATYKAPLLFNPLGQYNPVSAGFDRLD-----LYDTESDAYTESLSASRGWDASLG 374 (594)
T ss_pred ecccCcceeEeeeeeeccc-hhcCceEEEeecccCCccceeccccccccch-----hhccccccccceeeeeehhccccC
Confidence 9999999999999999887 5668999999999865 22222222222211 11111 111 222 11 1
Q ss_pred ccceEEEEEEEEEEEcCCCCCCCcHHHHHHhCCcceeeeEEEEEEeCCCCCCCCCceeeEEEEEEeee--cCCCccccee
Q 009626 252 SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGG--LAPDSRCLRF 329 (530)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~s~~i~~~~g~~~~~sl~~~~~~d~rd~~~~Pt~G~~~~~~~~~~g--lg~~~~~~~f 329 (530)
....+.+.|.+.+....+... ....+..++.+++.+|+ |+..+|+.|+++...+..+- ++++ . +
T Consensus 375 ~~~~~~~r~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~-dd~~~Pt~G~~~~~~~~~s~~~~~s~---~-~ 440 (594)
T COG0729 375 WQRSLALRFSYDNFRQGDISG---------KTSLLTPGVEFSYTRDT-DDGLFPTWGDRLDLTIGPSYEALGSD---V-D 440 (594)
T ss_pred ceeEEEEEEEccccccccccC---------CceEEecceEEEEEEcc-CCCCCCCccceeeeeeeeccccccCc---h-H
Confidence 122333444444422221110 01133457778888888 99999999999999988642 4544 4 4
Q ss_pred eeeEeeeEEEEEecccceEEEEEEEEEEEeecCCCcccCCCCCCcccccCCCCCCcccCCCCCcccCccCCCCCCCCCCc
Q 009626 330 LRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRR 409 (530)
Q Consensus 330 ~k~~~~~~~~~~l~~~~~~l~~~~~~G~i~~~~~~~~~~~~p~~drF~lGg~~~~~~~~gG~~slRGf~~~~lGP~~~~~ 409 (530)
++.......|+++...++.+..++.+|++...+. ..+|++.|||+| |..|||||.+++|||++.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~R~~~G~il~~~~----~~vPps~rFfaG----------G~~svRGY~y~sI~p~~~-- 504 (594)
T COG0729 441 FRLVQARSGYLRTGGADHRLAGRGELGAILTGDL----DDVPPSLRFFAG----------GDRSVRGYGYQSIGPQDA-- 504 (594)
T ss_pred HhhhhccceeeecCccceEEEEecccceEeeCcc----ccCCccceeecC----------CCcceeccccccccCcCC--
Confidence 4545555555555435667889999999997433 579999999999 789999999999999863
Q ss_pred CCCCCCCCCCcCCCCCcccCceeEEEeceEEEEeCCcccccCCCeeEEEEeecccccccCcccccCCChhhhccCceeee
Q 009626 410 QVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSV 489 (530)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~~~~~~~~~~~F~DaG~v~~~~~~~~~~~~~~~~~~~~~~s~ 489 (530)
+++.+||..++.+++|++|.+ ..+|++++|+|+|.||++... ..++|+.++
T Consensus 505 --------------~g~~~Gg~~l~~~s~Ey~~~~------t~~~~~a~FvD~G~a~n~~~~---------~~~d~k~G~ 555 (594)
T COG0729 505 --------------NGDLLGGRSLVTGSLEYQYLV------TDPWGLAVFVDAGSAGNNFTR---------LFSDLKKGA 555 (594)
T ss_pred --------------CCCcccceEEEEeeEEEEEec------cCcEEEEEEEEccccccCCch---------hhhhhhccc
Confidence 578899999999999999965 228999999999999998632 246799999
Q ss_pred eEEEEEeeCceEEEEEEEEeccccCCCCCcccEEEeccCC
Q 009626 490 GAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAP 529 (530)
Q Consensus 490 G~Glr~~tp~g~l~ldya~pl~~~~~d~~~~gf~f~~g~~ 529 (530)
|+||||.||+|||+||+|+||...+ |. +-+|+++||+.
T Consensus 556 Gigvr~~SPvGPIr~DiA~pl~~~~-~~-~~~~Yi~iG~~ 593 (594)
T COG0729 556 GIGVRWDSPVGPIRFDIAVPLEDKD-DK-KFQFYIGIGQE 593 (594)
T ss_pred eeeEeecCCcCCeEEEeeccccccC-CC-CeeEEEEeccc
Confidence 9999999999999999999999766 43 44588888875
No 7
>PLN03138 Protein TOC75; Provisional
Probab=100.00 E-value=1.8e-38 Score=343.55 Aligned_cols=388 Identities=18% Similarity=0.150 Sum_probs=277.6
Q ss_pred CCCCCEEEE-----EE--EEECCcccCHHHHHHHhh--hhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCC
Q 009626 72 NGPVPLRVH-----DV--IVKGNTKTKDCLIEAELD--AIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPEL 142 (530)
Q Consensus 72 ~~g~~~~i~-----~V--~i~G~~~tk~~vI~r~l~--~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~ 142 (530)
.||...+|. +| .|+|++ +|+||+|+|+ +++|++|+...++++ ++||++||+|++|++.+.+++ ..
T Consensus 340 ~EG~i~~I~V~~~drig~~i~GNT--rD~VIRREL~~~lkeGd~fN~~~l~~s---lqRL~~LGlFedV~V~~~Pg~-~~ 413 (796)
T PLN03138 340 VEGDITKVVIQFQDKLGNVVEGNT--QLPIIDRELPKQLRQGHIFNIEAGKQA---LRNINSLALFSNIEVNPRPDE-KN 413 (796)
T ss_pred ecccEEEEEEEecccccccccCCc--cCeEEeeecccccCCCcccCHHHHHHH---HHHHHhCCCCceeEEEeccCC-CC
Confidence 466666665 55 566765 8999999997 489999999999996 999999999999999998642 35
Q ss_pred CCceEEEEEEEEecCCceeeeeE---EeeC-------CccceEEEEEEEEecCCCCccEEEEEEEEe-----eeeeeEEE
Q 009626 143 PGTSNVIIQVVETKTPLSGQIGT---YTKG-------EAKSSTVEGSLKYKNGFGYGDLWDASLAYG-----FDRSAEVS 207 (530)
Q Consensus 143 ~~~v~l~v~V~E~~~~~~g~~g~---~~s~-------~~~~~~~~~~~~~~Nl~G~G~~l~~~~~~g-----~~~~~~~~ 207 (530)
|+.|+|+|+|+|..+. ++.+++ |+.. ...++.+.++|++.||+|+|+++.++++++ .. ...|.
T Consensus 414 p~~VdL~V~VkE~e~~-t~~ls~g~g~~~G~g~~Psl~S~g~~Gtvs~~~~NL~G~g~~L~~~v~~s~~~~g~~-d~~f~ 491 (796)
T PLN03138 414 EGGIVVEIKLKELEPK-SAEVSTEWSIVPGRGGRPTLASIQPGGTVSFEHRNIQGLNRSILGSVTSSNLLNPQD-DLSFK 491 (796)
T ss_pred CCeEEEEEEEEEccCC-ceeEecccccccccCCCCccccccceeEEEEeccccccccceEEEEEEeecccCCcc-ceEEE
Confidence 7899999999995432 333222 2221 123557789999999999999999999884 33 67899
Q ss_pred EEEeeeeecCC--C--CcceEEEEeeecccccc---------ccceEEEEEEEEEEcc----cceEEEEEEEEEEEcCCC
Q 009626 208 AGVYLPRFKGL--V--TPMTARVFLQSQDWLKF---------SSYKEQSLGLSLGLFS----IRHHDLVYNLAWRTLTDP 270 (530)
Q Consensus 208 ~~~~~P~~~~~--~--~~~~~~~~~~~~~~~~~---------~s~~~~~~g~~~~l~~----~~~~~l~~~~~~~~~~~~ 270 (530)
++|+.||+.+. + +++.++++.++.....+ ......+.|+.+.+.. .....+++.+..-...+.
T Consensus 492 lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~~~~~R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~ 571 (796)
T PLN03138 492 LEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPPIWVDRAGFKANITENFTRQSKFTYGLVVEEITTRDE 571 (796)
T ss_pred EEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCcceEeecccceEeecccCCCCceEEEEEEEEEEeecC
Confidence 99999999773 3 67777777654321101 1122566777777642 112233333333333221
Q ss_pred CCCCc-----------------HHHHHHhCCcceeeeEEEEEEeCCCCCCCCCceeeEEEEEEeeecCCCcccceeeeeE
Q 009626 271 SHMSS-----------------NTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGGLAPDSRCLRFLRQE 333 (530)
Q Consensus 271 ~~~~s-----------------~~i~~~~g~~~~~sl~~~~~~d~rd~~~~Pt~G~~~~~~~~~~glg~~~~~~~f~k~~ 333 (530)
..... .......+...+.++...+++|++|++..||+|..+++++|.+- +....+.-|.|+.
T Consensus 572 ~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd~~~~~~~pt~G~~~~~~~EQ~l-pvg~~~~~fNR~~ 650 (796)
T PLN03138 572 TSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRDNTKFVNGAVVGDRHIFQVDQGL-GIGSKFPFFNRHQ 650 (796)
T ss_pred CCCccccccccccccccccCCCceeeccCCcchhhheeeeeEeccCCCCCCCCccceEEEEeeeec-cccCCCCceEEEE
Confidence 11100 00000123444567788999999999999999999999999863 3322357889999
Q ss_pred eeeEEEEEecc--------cceEEEEEEEEEEEeecCCCcccCCCCCCcccccCCCCCCcccCCCCCcccCccCCCCCCC
Q 009626 334 FDLRFAVPFGF--------YRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPA 405 (530)
Q Consensus 334 ~~~~~~~~l~~--------~~~~l~~~~~~G~i~~~~~~~~~~~~p~~drF~lGg~~~~~~~~gG~~slRGf~~~~lGP~ 405 (530)
+++++|+|+.+ .-.+|++++++|.+. ..+|++|.|.|| |++|||||....||
T Consensus 651 ~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG~~~--------GdLPpYEAF~LG----------G~nSVRGY~eG~lg-- 710 (796)
T PLN03138 651 LTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCV--------GDLPSYDAFTLG----------GPYSVRGYNMGELG-- 710 (796)
T ss_pred EEEEEEEeeccccccccCCCCcEEEEEEecccee--------cCCCcHHhcccC----------CCCcccCcccCccc--
Confidence 99999999820 137899999999987 269999999999 89999999987776
Q ss_pred CCCcCCCCCCCCCCcCCCCCcccCceeEEEeceEEEEeCCcccccCCCeeEEEEeecccccccCcccccCCChhhh--cc
Q 009626 406 EPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKF--LQ 483 (530)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~~~~~~~~~~~F~DaG~v~~~~~~~~~~~~~~~~--~~ 483 (530)
.|+.++.+++|||+||. ++.+++|+|+|+.|.......-+ +... ..
T Consensus 711 -----------------------~gRs~l~asaEyRfPi~-------~~~g~~F~D~GsdLgS~~~V~G~--P~~~r~kp 758 (796)
T PLN03138 711 -----------------------AARNILEVAAELRIPVR-------NTHVYAFAEHGTDLGSSKDVKGN--PTEFFRRA 758 (796)
T ss_pred -----------------------ccceeEEEEEEEEeeec-------cceEEEEEEeccccCCCCCCCCC--chhhccCC
Confidence 67999999999999762 46789999999999876542110 1111 24
Q ss_pred CceeeeeEEEEEeeCceEEEEEEEEeccccCCCCCcccEEEeccCC
Q 009626 484 STRSSVGAGIVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAP 529 (530)
Q Consensus 484 ~~~~s~G~Glr~~tp~g~l~ldya~pl~~~~~d~~~~gf~f~~g~~ 529 (530)
..-.|+|+||| +||||+|||+. . +.....|||+||..
T Consensus 759 G~G~syG~Gvr----lGpiR~dYa~~--~---~~G~~r~hfg~Ger 795 (796)
T PLN03138 759 GHGSSYGVGVK----LGLVRAEYAVD--H---NAGTGAIFFRFGER 795 (796)
T ss_pred CCCcccceeeE----ecceeEEEeec--C---CCCCceEEEecccc
Confidence 56788999999 89999999982 1 12233499999964
No 8
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=100.00 E-value=5.7e-37 Score=312.13 Aligned_cols=311 Identities=29% Similarity=0.420 Sum_probs=247.5
Q ss_pred cCCCCccEEEEEEEEeeeeeeEEEEEEeeeeecCCCCcceEEEEeeeccccccccceEEEEEEEEEE----cccceEEEE
Q 009626 184 NGFGYGDLWDASLAYGFDRSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWLKFSSYKEQSLGLSLGL----FSIRHHDLV 259 (530)
Q Consensus 184 Nl~G~G~~l~~~~~~g~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~l----~~~~~~~l~ 259 (530)
|+||+|+++++.+.++.. .+.+.++|+.|++.+.++.+.+++++.+.+......|+.+..++++++ ...+.+.++
T Consensus 1 N~~G~g~~~~~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (323)
T PF01103_consen 1 NLFGTGQSLSVSATYGSD-SQSLSLSYTNPYFFGDRLSLGFSLYYSSSDSDEFSSYDEQTFGFSLSLGYRISPNWSLSLG 79 (323)
T ss_pred CCCCCCeEEEEEEEEcCc-eEEEEEEEEEcCCCCCCEEEEEEEEEEEccccccccceeeeccccccceeEcccceEEEEE
Confidence 899999999999999886 789999999999998888998888877544444456777777766654 346677777
Q ss_pred EEEEEEEcCCCCCCCcHH----HHHHhCCcceeeeEEEEEEeCCCCCCCCCceeeEEEEEEeee--cCCCcccceeeeeE
Q 009626 260 YNLAWRTLTDPSHMSSNT----VRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGG--LAPDSRCLRFLRQE 333 (530)
Q Consensus 260 ~~~~~~~~~~~~~~~s~~----i~~~~g~~~~~sl~~~~~~d~rd~~~~Pt~G~~~~~~~~~~g--lg~~~~~~~f~k~~ 333 (530)
+.+.+.++.......... .....++....++.+.++||+||+.++|++|+++.+..+.+. ++++ .+|.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~~~~~~---~~f~k~~ 156 (323)
T PF01103_consen 80 YSYSRNDFSTSSGSPFSDSVSSSDLQDGKSNISSLGLSLSYDTRDNSFFPTKGWYLSFSLEFSGKFLGSD---SNFYKFE 156 (323)
T ss_pred EEEEEEEEEcCCCcccccccccccccCCceEEEEEEEEEEEecCCCccCCccceEEEEEEEEecccCCCc---ceEEEEE
Confidence 777777665432221110 112356777889999999999999999999999999999876 5555 7899999
Q ss_pred eeeEEEEEecc-cceEEEEEEEEEEEeecCCCcccCCCCCCcccccCCCCCCcccCCCCCcccCccCCCCCCCCCCcCCC
Q 009626 334 FDLRFAVPFGF-YRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVR 412 (530)
Q Consensus 334 ~~~~~~~~l~~-~~~~l~~~~~~G~i~~~~~~~~~~~~p~~drF~lGg~~~~~~~~gG~~slRGf~~~~lGP~~~~~~~~ 412 (530)
+++++|++|.. .++++++++.+|++.+++.. ..+|++|+|++| |.++||||..++++|++.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~lp~~~~f~lG----------G~~svRGy~~~~~~~~~~----- 218 (323)
T PF01103_consen 157 LSARYYYPLGNNHKFVLALRLQGGYIFGYSNS---DNLPFSERFYLG----------GPNSVRGYRYRSIGPRDG----- 218 (323)
T ss_pred EEEEEEEECccCCceEEEEeeeeeEeeecccc---cccchhhhhccC----------CCCccccccCCccccccc-----
Confidence 99999999972 36899999999999876542 359999999999 899999999999999763
Q ss_pred CCCCCCCcCCCCCcccCceeEEEeceEEEEeCCcccccCCCeeEEEEeecccccccCcccccCCChhhhccCceeeeeEE
Q 009626 413 GDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAG 492 (530)
Q Consensus 413 ~~~~~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~~~~~~~~~~~F~DaG~v~~~~~~~~~~~~~~~~~~~~~~s~G~G 492 (530)
....+||+.++.+++|+|+++|... ....+++++|+|+|+||+................++++|+|+|
T Consensus 219 -----------~~~~~gG~~~~~~~~E~r~~l~~~~-~~~~~~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~G 286 (323)
T PF01103_consen 219 -----------DGDSLGGDYYFTASAEYRFPLPKIP-GSPNLYLVAFADAGNVWNDNDNFPLNSDSFTSKDNIRSSVGVG 286 (323)
T ss_pred -----------cCcccCceEEEEEeeeeEeeccccc-cCCcEEEEEEEccccccccCCCcCcccccccccccccceEEEE
Confidence 3567899999999999999886431 1235999999999999998754211100000014689999999
Q ss_pred EEEeeCceEEEEEEEEeccccCCCCCcccEEEeccCC
Q 009626 493 IVFPTNLFRLEVNYCRILKKSSHDHGKNGIQISLSAP 529 (530)
Q Consensus 493 lr~~tp~g~l~ldya~pl~~~~~d~~~~gf~f~~g~~ 529 (530)
|||.+|+||||++||+|++...+|..+ +|+|+||++
T Consensus 287 lr~~~~~g~lr~d~a~~l~~~~~~~~~-~f~f~~g~~ 322 (323)
T PF01103_consen 287 LRYDTPIGPLRFDYAYPLNKPPGDDRN-RFYFSIGQT 322 (323)
T ss_pred EEEecCcEEEEEEEEEEccCCCCCcce-EEEEEEeCC
Confidence 999999999999999999988887767 799999986
No 9
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=99.90 E-value=9e-21 Score=204.34 Aligned_cols=378 Identities=19% Similarity=0.199 Sum_probs=248.9
Q ss_pred EEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEEecC
Q 009626 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKT 157 (530)
Q Consensus 78 ~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E~~~ 157 (530)
+|++|+|.|....++..++..++..+|++++...|++. ...|.++.--+ |.+.+.++ +.|+..+|+|++++.+
T Consensus 149 ~i~~i~i~g~~~~~~~~~~~~~p~~~g~~Ln~~~lEq~---l~~l~~~P~~q-a~~~l~pg--~~~G~S~l~i~~~~~~- 221 (554)
T COG2831 149 RIEDIRITGDSDLRSVALRSLFPAHRGDPLNLRDLEQG---LELLNRLPGVQ-ADAELVPG--SEPGESDLVIKVQQGK- 221 (554)
T ss_pred EeeeEEEcCCCccchhhHHhhccccCCCCCCHHHHHHH---HHHhhhCcccc-ceeEEccC--CCCCccEEEEEeeeCC-
Confidence 68999999999999899999999999999999999995 88888887766 88888854 7899999999999965
Q ss_pred CceeeeeE--EeeCCccceEEEEEEEEecCCCCccEEEEEEEEeeeee--eEEEEEEeeeeecCCCCcceEEEEeeeccc
Q 009626 158 PLSGQIGT--YTKGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGFDRS--AEVSAGVYLPRFKGLVTPMTARVFLQSQDW 233 (530)
Q Consensus 158 ~~~g~~g~--~~s~~~~~~~~~~~~~~~Nl~G~G~~l~~~~~~g~~~~--~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 233 (530)
++.+.+++ +++..++.+++.+++.+.|++|+|+.+++++..+.+.. ..+++.|+.|+-. +.+++..++.....
T Consensus 222 ~~~~~~~~DN~G~~~tG~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~---~~~~~~~s~~~y~~ 298 (554)
T COG2831 222 PWRVSASADNYGSKSTGRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGY---WTFSLGASYSEYRQ 298 (554)
T ss_pred CeEEEEEecCCCCcCccceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEcc---ceeEEEeeeeeeEe
Confidence 35788887 55555678899999999999999999999998855433 4799999999975 34444443332211
Q ss_pred ---cccccce--EEEEEEEEEEc------ccceEEEEEEEEEEEcCCCCCCCcHHHHHHhCCcceeeeEEEEEE----eC
Q 009626 234 ---LKFSSYK--EQSLGLSLGLF------SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKF----DK 298 (530)
Q Consensus 234 ---~~~~s~~--~~~~g~~~~l~------~~~~~~l~~~~~~~~~~~~~~~~s~~i~~~~g~~~~~sl~~~~~~----d~ 298 (530)
..+..++ -++...++.+. ......++..+.+++..+........+ +..+.....++++..+ ..
T Consensus 299 ~~~~~~~~~~~~G~s~~~~~~l~~~l~R~~~~~~s~~~~~~~r~~~~~~~~~~~~~--q~r~~~~~~~gl~~~~~~~~~~ 376 (554)
T COG2831 299 VLEGPFDVLDYQGKSQNLSLRLSHPLLRNRSSKLSLGLGLSHRRSENYLDDTEIEV--QRRRLTAVELGLSGRRYLGGGT 376 (554)
T ss_pred ecccCCceEEEecceEEEEEEeeeEEEecCcceEEEEEEEEEehhhhhhccccccc--cccccccEEecceEEEEeccce
Confidence 1112222 22233333331 244555666666665544321111000 1112222222222211 11
Q ss_pred CCCCCCCCceeeEEEEEEeee-cCCCcccceeeeeEeeeEEEEEeccc-ceEEEEEEEEEEEeecCCCcccCCCCCCccc
Q 009626 299 RNSPLRPTRGYAFVSTTQIGG-LAPDSRCLRFLRQEFDLRFAVPFGFY-RTALNFGISSGVVLPIGRDFLRMSTSLPERF 376 (530)
Q Consensus 299 rd~~~~Pt~G~~~~~~~~~~g-lg~~~~~~~f~k~~~~~~~~~~l~~~-~~~l~~~~~~G~i~~~~~~~~~~~~p~~drF 376 (530)
.+..+.-.+|...-....... ..+ ..+..|.++.+++.+.+||. . .+.+..++.+- + ++ ..++.+|+|
T Consensus 377 ~~~~l~~~~G~~~lGa~~~~~~~~~-~~~~~f~~~~~~~~~~~~f~-~~~~~~~~~~~~Q--~--s~----~~L~s~e~f 446 (554)
T COG2831 377 LDASLGYRRGLGALGASKDDEETNG-EPTSRFKKLNGNASLLQPFG-LGPFLYATQFNAQ--Y--SG----DPLLSSEKF 446 (554)
T ss_pred ecccchhhhCchhhcCCCCchhhcC-CCCcceEEEEEeeEEEeecc-cccEEEEEEEEEE--E--cC----CCCCcHHHe
Confidence 111121122221111100000 001 12378999999999999997 4 45555544443 2 22 479999999
Q ss_pred ccCCCCCCcccCCCCCcccCccCCCCCCCCCCcCCCCCCCCCCcCCCCCcccCceeEEEeceEEEEeCCcccccCCCeeE
Q 009626 377 FLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHG 456 (530)
Q Consensus 377 ~lGg~~~~~~~~gG~~slRGf~~~~lGP~~~~~~~~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~~~~~~~~~ 456 (530)
.+| |..+||||..+.+ -||.-+.++.|++++++.. . .+..
T Consensus 447 siG----------g~~sVRGf~~~~l--------------------------sgD~G~~~snel~~~~~~~---~-~~~~ 486 (554)
T COG2831 447 SIG----------GRYSVRGFDGGSL--------------------------SGDRGWYLSNELRWPLPPG---G-ALQP 486 (554)
T ss_pred ecC----------CCceecccCCCCc--------------------------cccceEEEEEEEEeeccCC---C-ceeE
Confidence 998 8999999985322 3577788999999988631 1 1889
Q ss_pred EEEeecccccccCcccccCCChhhhccCceeeeeEEEEEeeCc-eEEEEEEEEeccccCC---CCCcccEEEe
Q 009626 457 HLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNL-FRLEVNYCRILKKSSH---DHGKNGIQIS 525 (530)
Q Consensus 457 ~~F~DaG~v~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~~tp~-g~l~ldya~pl~~~~~---d~~~~gf~f~ 525 (530)
.+|+|.|.||+... .....+-.+++|+|||+..+. ...+|++|+||.+... +..+.+|.|+
T Consensus 487 y~f~D~G~v~~~~~--------~~~~~~~l~g~~~Glr~~~~~~f~~~l~~g~pl~~p~~~~~~~~~~~~~~~ 551 (554)
T COG2831 487 YVFVDYGKVYNNSA--------EYLSGETLAGAGLGLRGNLKDGFSYDLDLGRPLSKPAGFDNRRTVVGFSFS 551 (554)
T ss_pred EEEEEeEEEecccc--------ccCCCCeeEEEEEeEEeeecCcceeEEEecccccCccccCCCCceeEEEEE
Confidence 99999999999831 112356788999999998877 8999999999998654 2333444444
No 10
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=99.78 E-value=4.9e-16 Score=163.08 Aligned_cols=343 Identities=18% Similarity=0.210 Sum_probs=171.6
Q ss_pred HhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEEecCCceeeeeE--EeeCCccceE
Q 009626 98 ELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETKTPLSGQIGT--YTKGEAKSST 175 (530)
Q Consensus 98 ~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E~~~~~~g~~g~--~~s~~~~~~~ 175 (530)
.+|.++|++++...|++. ...|.++.-- +|.+.+.|+ +.++..+|+|.+++.+ ++.+.+++ +++..++.++
T Consensus 10 ~fP~~~G~~LnlrdlEQg---le~lnrl~~~-~~~~~i~PG--~~~G~S~i~i~~~~~~-~~~~~~~~DN~Gs~~TG~~q 82 (404)
T PF03865_consen 10 AFPNRKGKPLNLRDLEQG---LEQLNRLPSN-QAKIDILPG--EEPGTSDIVIENQPSK-PWSGSLSLDNSGSKSTGRYQ 82 (404)
T ss_dssp -STT-TT-B--HHHHHHH---HHHH-S-SSE-EEEEEEEE---SSTTEEEEEEEEEE-S-S-EEEEEEEE-SSS-SS-EE
T ss_pred cCCCCCCCCCCHHHHHHH---HHHhccCCCC-cceEEEecC--CCCCEEEEEEEecccC-CEEEEEEEecCCccccceEE
Confidence 358889999999999995 8888887543 788888854 7889999999998875 46888887 5555567889
Q ss_pred EEEEEEEecCCCCccEEEEEEEEeee-----eeeEEEEEEeeeeecCCCCcceEEEEeeecccc---ccccce----EEE
Q 009626 176 VEGSLKYKNGFGYGDLWDASLAYGFD-----RSAEVSAGVYLPRFKGLVTPMTARVFLQSQDWL---KFSSYK----EQS 243 (530)
Q Consensus 176 ~~~~~~~~Nl~G~G~~l~~~~~~g~~-----~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~---~~~s~~----~~~ 243 (530)
+.+.+...|+||.++.|++++..... ....+.+.|..|+-. |.+.+..++....+. .+..++ ...
T Consensus 83 ~~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~G~---~~ls~~~s~s~y~~~~~~~~~~~~~~G~s~~ 159 (404)
T PF03865_consen 83 GGATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPYGY---WTLSLFASYSDYRYHQGLSYSTYDLSGDSRS 159 (404)
T ss_dssp EEEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEETT---EEEEEEEEEEEEE---SSSS-----EEEEEE
T ss_pred EEEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeeeec---eEEEEEEEEeEEEEeeccccceEEeeeeEEE
Confidence 99999999999999999999876432 135678999999854 455544444332210 111221 123
Q ss_pred EEEEEEE--c--ccceEEEEEEEEEEEcCCCCCCCcHHHHHHhCCcceeeeEEEEEEeCCCCCCCCCceeeEEEEEEeee
Q 009626 244 LGLSLGL--F--SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYTFKFDKRNSPLRPTRGYAFVSTTQIGG 319 (530)
Q Consensus 244 ~g~~~~l--~--~~~~~~l~~~~~~~~~~~~~~~~s~~i~~~~g~~~~~sl~~~~~~d~rd~~~~Pt~G~~~~~~~~~~g 319 (530)
.++.+.. . ......+...+.+++..+...... + ........++.+.+.+.. .++.-.+.+.+.++.+-
T Consensus 160 ~~~~~~~~l~R~~~~k~~l~~~l~~k~~~n~i~d~~--i--~v~~~~lt~~~lgl~~~~----~~~~g~~~~~l~~~~G~ 231 (404)
T PF03865_consen 160 LGLRLSYVLYRSQNSKTSLSAGLSHKKSKNYINDIE--I--EVQSRRLTSLELGLNHSR----YLGGGVLSANLSYSQGL 231 (404)
T ss_dssp EEEEEEEEEE--SSEEEEEEEEEEEEEEEEE--TTS-------EEEEEEEEEEEEEEEE----E-TTEEEEEEEEEEEE-
T ss_pred EEEEeeEEEEECCCceEEEEEEEEEEEcccccccce--e--eeccceeeEEEeccceEE----EecCcEEEEeEEEEecc
Confidence 3333332 1 233445555555555443221111 1 011233456666666543 23443445666665421
Q ss_pred --cCCC---------cccceeeeeEeeeEEEEEecccceEEEEEEEEEEEeecCCCcccCCCCCCcccccCCCCCCcccC
Q 009626 320 --LAPD---------SRCLRFLRQEFDLRFAVPFGFYRTALNFGISSGVVLPIGRDFLRMSTSLPERFFLGGNLSPICSL 388 (530)
Q Consensus 320 --lg~~---------~~~~~f~k~~~~~~~~~~l~~~~~~l~~~~~~G~i~~~~~~~~~~~~p~~drF~lGg~~~~~~~~ 388 (530)
++.+ ....+|.|..+.+.++.|+...+..+.+..+....+ .. ..++-+|+|.+|
T Consensus 232 ~~~ga~~~~~~~~~~~~~~~f~k~~l~~~~~~~~~~~~~~~~~~~~~~gQy--s~----d~L~ssEq~siG--------- 296 (404)
T PF03865_consen 232 PWFGAERDPEDADGNGPDSQFTKWSLNASLYQPFQLGNQPFSYNSSLSGQY--SN----DNLYSSEQFSIG--------- 296 (404)
T ss_dssp ------------------EEEEEE---EEEEEEEEETTEEEEEEEEEEEEE---S----S-SSSSEE--S----------
T ss_pred CccCCcCCchhccCCCcccceEEEEeehhhccceeecCccEEEEEEEEEEE--CC----CCCChhheeccC---------
Confidence 2111 123689998888888877642233444443333222 22 479999999998
Q ss_pred CCCCcccCccCCCCCCCCCCcCCCCCCCCCCcCCCCCcccCceeEEEeceEEEEeCCcccccCCCeeEEEEeeccccccc
Q 009626 389 GGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSFDLPLRWFREKGIHGHLFACAGNVAKL 468 (530)
Q Consensus 389 gG~~slRGf~~~~lGP~~~~~~~~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~~lp~~~~~~~~~~~~~F~DaG~v~~~ 468 (530)
|..+||||+..++ -|+.-+....||.+++++. ...+...+|+|+|.|+..
T Consensus 297 -G~~sVRGF~~~~l--------------------------sGd~G~~~rNeLs~~~~~~---~~~l~py~g~D~G~v~~~ 346 (404)
T PF03865_consen 297 -GRYSVRGFDESSL--------------------------SGDSGWYLRNELSWPFPLG---NFSLTPYLGLDYGRVRGN 346 (404)
T ss_dssp ------TT----S----------------------------SS-SS--EESEEEEEEE-----SS-EEEEEEEEEEEEES
T ss_pred -CCceEcccCCCce--------------------------eecceEEEEEEEEeecCCC---CceEEEEEEEEEEEEecC
Confidence 8999999985433 3566667778888876542 346778899999999976
Q ss_pred CcccccCCChhhhccCceeeeeEEEEEeeCceEEEEE--EEEeccc
Q 009626 469 TENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVN--YCRILKK 512 (530)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~s~G~Glr~~tp~g~l~ld--ya~pl~~ 512 (530)
.... ...-..++++||++......+.++ .++||.+
T Consensus 347 ~~~~---------~~~~~~g~~~Gl~~~~~~~~~dl~vs~g~~l~~ 383 (404)
T PF03865_consen 347 KNNQ---------GWRSLAGLSAGLRLRYKQAQLDLEVSRGWPLYK 383 (404)
T ss_dssp SSS----------EEEEEEEEEEEEEEESSSEEE------------
T ss_pred CCCC---------CCceEEEEEEEEEEEEcceeeeecccccccccc
Confidence 4210 112234445555544444555554 4788843
No 11
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.71 E-value=3.8e-08 Score=78.36 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=63.7
Q ss_pred EEEEEEEEECC-cccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhh----hCCC-cceeEEEEcCCCCCCCCceEEEE
Q 009626 77 LRVHDVIVKGN-TKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLR----ELEC-FDSVEITLDSGPPELPGTSNVII 150 (530)
Q Consensus 77 ~~i~~V~i~G~-~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~----~lg~-F~~V~i~~~~~~~~~~~~v~l~v 150 (530)
++|++|.|.|+ +.++++.|++.+.+++|++|+...++++ .++|. ++|+ |..|.+.+.+. ++.++|++
T Consensus 1 ~~i~~I~i~Gn~~~~~~~~l~~~l~~~~G~~~~~~~i~~~---~~~l~~~y~~~Gy~~~~V~~~~~~~----~~~v~l~~ 73 (78)
T PF07244_consen 1 YRIGEINIEGNLKKFSDEELRRELGLKPGDPFNPEKIEED---IERLQDYYKDKGYFFAKVSPEIDPD----DNTVDLTF 73 (78)
T ss_dssp CEEEEEEEESE-SSSHHHHHHHCHSS-TTSBECHHHHHHH---HHHHHHHHHTTSCSEEEEEEEEEEE----TTEEEEEE
T ss_pred CEEEEEEEEcCceEeCHHHHHhhcCCCCCCEeCHHHHHHH---HHHHHHHHHHcCCcceEEEEEEEEc----CCEEEEEE
Confidence 47999999998 9999999999999999999999999996 88888 9999 88998888843 37899999
Q ss_pred EEEEe
Q 009626 151 QVVET 155 (530)
Q Consensus 151 ~V~E~ 155 (530)
.|+|.
T Consensus 74 ~V~Eg 78 (78)
T PF07244_consen 74 NVDEG 78 (78)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 12
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=97.54 E-value=0.0092 Score=68.03 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=65.5
Q ss_pred CCCCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHh-hhCCCcceeEEEEcCCCCCCCCceEEEE
Q 009626 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKL-RELECFDSVEITLDSGPPELPGTSNVII 150 (530)
Q Consensus 72 ~~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL-~~lg~F~~V~i~~~~~~~~~~~~v~l~v 150 (530)
++|++++|++|.|.|+..++++.|++.+.+++|++|+.+.++++.....++ .+.|+. .+.+.+....+...+.++|++
T Consensus 236 ~eG~~~~i~~i~i~g~~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~~l~~~y~~~Gy~-~~~v~~~~~~~~~~~~v~v~~ 314 (741)
T TIGR03303 236 KEGEQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYA-FANVNPRPQINDENKTVDLTF 314 (741)
T ss_pred ccCCCEEEEeEEEEeccCCcHHHHHHhhcCCCCCeeCHHHHHHHHHHHHHHHHhcCCc-eeEEEecceECCCCCEEEEEE
Confidence 579999999999999999999999999999999999999999874333333 336763 455554432223455799999
Q ss_pred EEEEecC
Q 009626 151 QVVETKT 157 (530)
Q Consensus 151 ~V~E~~~ 157 (530)
.|.|.++
T Consensus 315 ~v~eg~~ 321 (741)
T TIGR03303 315 KVDPGKR 321 (741)
T ss_pred EEccCCe
Confidence 9999874
No 13
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=97.25 E-value=0.00078 Score=77.63 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=63.1
Q ss_pred CEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEEe
Q 009626 76 PLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVET 155 (530)
Q Consensus 76 ~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E~ 155 (530)
.+.|.+|+|+|++++.+..|+..+++++|++++++.+.++ .++|+++|+|++|.+..+ + ..|+|.|+|+
T Consensus 23 ~~~v~~I~i~G~~~~~~~~i~~~~~~~~G~~~~~~~~~~~---i~~l~~~g~F~~v~v~~~-------~-~~l~~~v~e~ 91 (803)
T PRK11067 23 GFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNT---IRALFATGNFEDVRVLRD-------G-NTLLVQVKER 91 (803)
T ss_pred ceEEEEEEEECccccCHHHHHhhCCCCCCCccCHHHHHHH---HHHHHhcCCCceEEEEec-------C-CEEEEEEecC
Confidence 4579999999999999999999999999999999999985 999999999999999642 1 2678999998
Q ss_pred cC
Q 009626 156 KT 157 (530)
Q Consensus 156 ~~ 157 (530)
+.
T Consensus 92 p~ 93 (803)
T PRK11067 92 PT 93 (803)
T ss_pred cE
Confidence 64
No 14
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.0014 Score=73.88 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=65.4
Q ss_pred CCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEE
Q 009626 75 VPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVE 154 (530)
Q Consensus 75 ~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E 154 (530)
....|.+|+|+|++++....+...|++++|+.++.+.+.++ .++|+++|+|+.|.+.... + .|+|+|+|
T Consensus 22 ~~~vv~~I~v~G~~~~~~~~~~~~l~~~~G~~~s~~~i~~~---ik~L~~tg~F~~v~~~~~~------~--~Lvv~V~e 90 (766)
T COG4775 22 EAFVVKDIRVEGLQRVSSGTALSYLPVRVGDTVSDEDIDEA---IKALYATGYFEDVRVEREG------G--TLVVTVKE 90 (766)
T ss_pred cceEEEEEEEecccccchhhhhhhcCcccCccccHHHHHHH---HHHHHhcCCCcceEEEEcC------C--EEEEEEec
Confidence 46789999999999999999999999999999999999995 9999999999999999873 2 38999999
Q ss_pred ecC
Q 009626 155 TKT 157 (530)
Q Consensus 155 ~~~ 157 (530)
++.
T Consensus 91 ~p~ 93 (766)
T COG4775 91 RPV 93 (766)
T ss_pred CCc
Confidence 874
No 15
>PLN03138 Protein TOC75; Provisional
Probab=96.75 E-value=0.006 Score=68.17 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=69.9
Q ss_pred HHHhcCCCCCEEEEEEEEEC----CcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCC
Q 009626 67 FRRIRNGPVPLRVHDVIVKG----NTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPEL 142 (530)
Q Consensus 67 ~~~~~~~g~~~~i~~V~i~G----~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~ 142 (530)
+.++. --+++.|.+|.|.| .+...++.|...+.+++|..|++..|++. .++|+++|+|++|++.+.+. .
T Consensus 139 ~~~~~-~~~~~~vs~v~~~~~~~~~~~~~e~~l~~~i~~kpG~v~trsqLq~d---v~~I~~tG~F~~V~~~v~~~---~ 211 (796)
T PLN03138 139 LSKLS-GFKRYKVSEIEFFDRRRNTTVGTEDSFFEMVTLRPGGVYTKAQLQKE---LETLASCGMFEKVDLEGKTK---P 211 (796)
T ss_pred chhcC-CcceEEEEEEEEeccccCCCcchHHHHHHHHhcCCCCccCHHHHHHH---HHHHHhcCCceEEEEEEEeC---C
Confidence 34453 34589999999987 56667888999999999999999999996 99999999999999988752 3
Q ss_pred CCceEEEEEEEEecC
Q 009626 143 PGTSNVIIQVVETKT 157 (530)
Q Consensus 143 ~~~v~l~v~V~E~~~ 157 (530)
.+.+.|+|.++|.++
T Consensus 212 dg~v~V~~~i~Eg~~ 226 (796)
T PLN03138 212 DGTLGLTISFTESTW 226 (796)
T ss_pred CCeEEEEEEEEeCCc
Confidence 567999999999875
No 16
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=96.32 E-value=0.0086 Score=46.12 Aligned_cols=68 Identities=25% Similarity=0.294 Sum_probs=51.7
Q ss_pred EEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEEe
Q 009626 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVET 155 (530)
Q Consensus 78 ~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E~ 155 (530)
+|.+|.|+|+..++..-|...+.+..|..+..-.+.+ +.++|.++.+.++|.+.... |++ |.|.|+|+
T Consensus 2 ~v~~I~V~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~l~~~p~V~~v~V~r~~-----P~~--l~I~V~Er 69 (69)
T PF08478_consen 2 RVKKIEVSGNSYLSKEEILQALGIQKGKNLFSLDLKK---IEQRLEKLPWVKSVSVSRRF-----PNT--LEIKVKER 69 (69)
T ss_dssp S--EEEEES-SSS-HHHHHHHHCTTSTTTCCCSHHHH---HHHCCCCTTTEEEEEEEEET-----TTE--EEEEEEE-
T ss_pred CccEEEEECCCcCCHHHHHHHhCcCCCCeEEEECHHH---HHHHHHcCCCEEEEEEEEeC-----CCE--EEEEEEeC
Confidence 4789999999999999999999998888655444454 38899999999999999874 564 67778874
No 17
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=95.96 E-value=0.012 Score=66.54 Aligned_cols=72 Identities=10% Similarity=-0.040 Sum_probs=61.7
Q ss_pred EEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEEec
Q 009626 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETK 156 (530)
Q Consensus 78 ~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E~~ 156 (530)
-|.+|.|.|.+.-=+.++...+..++|..+++..+++. .++++++|+|++|.+.++. .|..|.|++.|+|++
T Consensus 109 l~~e~~~~~~~~~~~~~~~~~~~~~~G~~~t~~~~~~d---~~~i~~tG~F~~V~~~~~~----~~~Gv~v~~~V~enP 180 (718)
T TIGR00992 109 LQKELEVLATCGMFEKVDYEGKTTQDGRLGTTISFAES---VWAIADRFRCINVGLMPQS----KPLEMDVDMEVKEKP 180 (718)
T ss_pred eeeeeeeecCcHHHHHHHhhccccCCCCcccHHHHHHH---HHHHHHcEEeeeeEEeecc----CCCceEEEEEEecCC
Confidence 37899999996555566666678899999999999996 9999999999999999885 467799999999976
No 18
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=95.89 E-value=0.0025 Score=51.24 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=13.9
Q ss_pred ccccCccCCCccchHHHHHHHHHhc
Q 009626 47 DDAAQPQRKSRVDRPKIENLFRRIR 71 (530)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (530)
|++....+.+.+.++++--+.|-+.
T Consensus 37 e~de~p~p~fgea~~~~~~v~rYlt 61 (101)
T PF09026_consen 37 EEDEVPVPEFGEAMAYFTMVKRYLT 61 (101)
T ss_dssp ---------HHHHHHHHHHHHHHHC
T ss_pred ccccccchhHHHHHhhcchHhhhhh
Confidence 3346788888889999998888875
No 19
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=94.31 E-value=0.012 Score=47.37 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=0.0
Q ss_pred cccccccCccCCC
Q 009626 44 EEDDDAAQPQRKS 56 (530)
Q Consensus 44 ~~~~~~~~~~~~~ 56 (530)
+++++++....+.
T Consensus 31 Dddddee~de~p~ 43 (101)
T PF09026_consen 31 DDDDDEEEDEVPV 43 (101)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 3334444443333
No 20
>PRK05529 cell division protein FtsQ; Provisional
Probab=94.25 E-value=0.17 Score=49.83 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=61.1
Q ss_pred CCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEE
Q 009626 74 PVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVV 153 (530)
Q Consensus 74 g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~ 153 (530)
.+-..|.+|+|+|+..++.+-|+..+....|+.+..-...+ +.++|.++.+.++|+++... |++ |.|+|+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~---~~~~l~~~P~V~sa~V~r~~-----P~t--l~I~V~ 127 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPET---VRKKLAAFPLIRSYSVESKP-----PGT--IVVRVV 127 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHH---HHHHHhcCCCEeEEEEEEeC-----CCE--EEEEEE
Confidence 46889999999999999999999999888888654444444 47889999999999999874 564 688899
Q ss_pred EecC
Q 009626 154 ETKT 157 (530)
Q Consensus 154 E~~~ 157 (530)
|+..
T Consensus 128 Er~p 131 (255)
T PRK05529 128 ERVP 131 (255)
T ss_pred Eeee
Confidence 9974
No 21
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=92.74 E-value=0.83 Score=35.83 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=46.3
Q ss_pred EEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHH-HHHHHhhhCCCc-ceeEEEEcCCCCCCCCceEEEEEEEE
Q 009626 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAAN-IINYKLRELECF-DSVEITLDSGPPELPGTSNVIIQVVE 154 (530)
Q Consensus 78 ~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~-~~~~rL~~lg~F-~~V~i~~~~~~~~~~~~v~l~v~V~E 154 (530)
.|.+|+|+|++.+++..|.+.+.-..|.+.+...+.+.. +..+.+.+-||. .+|.+..+. -..+ .|.+.|.|
T Consensus 2 ~i~~i~~~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~---i~~G--~l~i~V~e 75 (76)
T PF08479_consen 2 PIKGIRFEGNTLLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQD---ISDG--VLTIRVVE 75 (76)
T ss_dssp ---EEEEES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEE---ETTS--EEEEEEE-
T ss_pred CeEEEEEECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCee---cCCC--EEEEEEEc
Confidence 578999999999999999999988888887766665543 455666777988 567775442 1234 36777765
No 22
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=90.30 E-value=0.73 Score=45.78 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=60.4
Q ss_pred EEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEEec
Q 009626 77 LRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVETK 156 (530)
Q Consensus 77 ~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E~~ 156 (530)
..|..|.|+|+..++++.|++.+.+..+..+..-.+.+. +++|..+.+.++|.|.-.- |++ |.|.|+|+.
T Consensus 60 ~~i~~v~v~Gn~~~s~~~I~~~~~l~~~~~~~~ld~~~~---~~~i~~~PwVk~a~V~r~~-----Pnt--v~I~v~Er~ 129 (269)
T COG1589 60 FPIRKVSVSGNNQVSEEDILKALGLDGGTSFLTLDLNAI---RENIEKLPWVKSAEVRRQF-----PNT--LEIEVVERE 129 (269)
T ss_pred ccceEEEEecCcccCHHHHHHHhhhccCCceEEEcHHHH---HHHHHhCCCeEEEEEEEeC-----CCc--EEEEEEEee
Confidence 468999999999999999999999988887776666664 8999999999999999863 565 678899986
Q ss_pred C
Q 009626 157 T 157 (530)
Q Consensus 157 ~ 157 (530)
.
T Consensus 130 p 130 (269)
T COG1589 130 P 130 (269)
T ss_pred e
Confidence 3
No 23
>PRK10775 cell division protein FtsQ; Provisional
Probab=77.41 E-value=8.8 Score=38.26 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=53.8
Q ss_pred CCCEEEEEEEEECCcc-cCHHHHHHHh-hh-hhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEE
Q 009626 74 PVPLRVHDVIVKGNTK-TKDCLIEAEL-DA-IRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVII 150 (530)
Q Consensus 74 g~~~~i~~V~i~G~~~-tk~~vI~r~l-~~-~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v 150 (530)
.+...|.+|.|+|+.+ +...-|+..+ .. .+|..+. -.+.. ++++|.++.+.++|.|.-.- |+ .|.|
T Consensus 53 ~~~~pl~~V~V~G~~~~~~~~~I~~~i~~~~~~g~f~~-~Dl~~---i~~~l~~lPWV~~a~VrR~w-----Pd--tL~V 121 (276)
T PRK10775 53 AQRLPLSKLVVTGERHYTTNDDIRQAILALGAPGTFMT-QDVNI---IQQQIERLPWIKQVSVRKQW-----PD--ELKI 121 (276)
T ss_pred CCCCceeEEEEeCCeeeCCHHHHHHHHhhccCCCCceE-EcHHH---HHHHHHcCCCeeEEEEEEeC-----CC--cEEE
Confidence 4466789999999986 6777777765 33 3556443 23344 48999999999999999874 56 4788
Q ss_pred EEEEecC
Q 009626 151 QVVETKT 157 (530)
Q Consensus 151 ~V~E~~~ 157 (530)
.|+|+..
T Consensus 122 ~V~Er~P 128 (276)
T PRK10775 122 HLVEYVP 128 (276)
T ss_pred EEEEeec
Confidence 8999974
No 24
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=65.17 E-value=4.2 Score=47.19 Aligned_cols=13 Identities=8% Similarity=-0.051 Sum_probs=6.6
Q ss_pred EEEEEEeeeeecC
Q 009626 205 EVSAGVYLPRFKG 217 (530)
Q Consensus 205 ~~~~~~~~P~~~~ 217 (530)
...+.+..||-+.
T Consensus 1916 ~~~ierf~Pyrfs 1928 (3015)
T KOG0943|consen 1916 SAGIERFDPYRFS 1928 (3015)
T ss_pred CCCeeeecccccc
Confidence 3445555555444
No 25
>PHA02644 hypothetical protein; Provisional
Probab=64.22 E-value=5.8 Score=31.15 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCc
Q 009626 10 PEQKPEALNPNLD 22 (530)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (530)
.|.|||+|.++++
T Consensus 65 dekkpekpenede 77 (112)
T PHA02644 65 DEKKPEKPENEDE 77 (112)
T ss_pred cccCCCCCccccc
Confidence 3567777766544
No 26
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=62.22 E-value=4.6 Score=42.10 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCCC
Q 009626 3 NAGGIPGPEQKPEAL 17 (530)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (530)
+.+++|.++..+...
T Consensus 20 ~~~~~~~~~~~~~~~ 34 (479)
T KOG0299|consen 20 SGGGKPFKSEEEAER 34 (479)
T ss_pred CCCCCCccccchhhc
Confidence 456778777666655
No 27
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=61.44 E-value=62 Score=35.75 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=55.5
Q ss_pred CCCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHH-HHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEE
Q 009626 73 GPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA-NIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQ 151 (530)
Q Consensus 73 ~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~-~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~ 151 (530)
|.+-+.|.+|+++|+.......|++.+....|.+.....|... +++.+.+..-||.-..-+-+.+ +-..+ .|.|+
T Consensus 69 E~~~f~I~~i~l~g~~~~~~~~l~~~~~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q--~i~~G--~l~l~ 144 (554)
T COG2831 69 ETPCFPINRIELEGNTLLDALELQAILAPYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQ--DLKSG--TLRLQ 144 (554)
T ss_pred CCceEEEEEEEEeCCcccChHHHHHhhHHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCC--cccCC--eEEEE
Confidence 4445899999999999999999999887777887665554443 3566777788987654444432 12334 46777
Q ss_pred EEEec
Q 009626 152 VVETK 156 (530)
Q Consensus 152 V~E~~ 156 (530)
|.|..
T Consensus 145 VveG~ 149 (554)
T COG2831 145 VVEGR 149 (554)
T ss_pred EeceE
Confidence 77764
No 28
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=60.77 E-value=6.4 Score=45.21 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=5.4
Q ss_pred EEEEEeeeeec
Q 009626 206 VSAGVYLPRFK 216 (530)
Q Consensus 206 ~~~~~~~P~~~ 216 (530)
+.+.+-.||+.
T Consensus 1011 IllgLGlPWlI 1021 (1096)
T TIGR00927 1011 ITVGLPVPWLL 1021 (1096)
T ss_pred eeeeccHHHHH
Confidence 33445555554
No 29
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=59.35 E-value=3.1 Score=47.19 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCE
Q 009626 63 IENLFRRIRNGPVPL 77 (530)
Q Consensus 63 ~~~~~~~~~~~g~~~ 77 (530)
.+.+|+.+-++|.+.
T Consensus 710 R~~L~nTLVNqGi~e 724 (787)
T PF03115_consen 710 RVTLFNTLVNQGIPE 724 (787)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHcCCCH
Confidence 345666666555443
No 30
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=58.25 E-value=4.6 Score=46.00 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=13.2
Q ss_pred cccccccccccccCCCccccccccC
Q 009626 27 EEEEDDDVVEEEDDDDLEEDDDAAQ 51 (530)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (530)
|+++.+..||++|||.+++|+|++.
T Consensus 319 eDed~~~~ed~eDde~~deYsDDeD 343 (1233)
T KOG1824|consen 319 EDEDAMFLEDEEDDEQDDEYSDDED 343 (1233)
T ss_pred cchhhhhhhccccchhccccccccc
Confidence 4444444444555554567776543
No 31
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=55.47 E-value=7.5 Score=41.28 Aligned_cols=11 Identities=18% Similarity=0.154 Sum_probs=6.4
Q ss_pred CcccCccCCCC
Q 009626 392 SALWGFKTRGL 402 (530)
Q Consensus 392 ~slRGf~~~~l 402 (530)
.|+||-+..-+
T Consensus 489 ~S~RGak~cv~ 499 (641)
T KOG0772|consen 489 ESIRGAKLCVV 499 (641)
T ss_pred ccccchhheee
Confidence 56777665433
No 32
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=54.73 E-value=6.2 Score=43.01 Aligned_cols=24 Identities=42% Similarity=0.436 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCcc-cccccccccc
Q 009626 10 PEQKPEALNPNLDE-IEEEEEEDDD 33 (530)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~ 33 (530)
|-.+-|++-..+++ ++||+||.||
T Consensus 883 Pme~~e~~gs~ee~~e~EeeeE~e~ 907 (952)
T KOG1834|consen 883 PMEDYEKGGSIEEESEEEEEEETED 907 (952)
T ss_pred chHhcccCCcccccccccccccccc
Confidence 33444554444444 3333334443
No 33
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=53.46 E-value=7.6 Score=40.86 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=4.9
Q ss_pred EEEEeeeeec
Q 009626 207 SAGVYLPRFK 216 (530)
Q Consensus 207 ~~~~~~P~~~ 216 (530)
-+++-.||+.
T Consensus 503 ~VGLplPWLL 512 (588)
T KOG1307|consen 503 LVGLPLPWLL 512 (588)
T ss_pred eecCCcHHHH
Confidence 3444555554
No 34
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.98 E-value=6.6 Score=40.27 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=6.8
Q ss_pred HHHHhcCCCCCEEEE
Q 009626 66 LFRRIRNGPVPLRVH 80 (530)
Q Consensus 66 ~~~~~~~~g~~~~i~ 80 (530)
++..+..+.++++|.
T Consensus 310 i~f~~~~ep~~~~I~ 324 (514)
T KOG3130|consen 310 IYFSHTVEPKRVRIN 324 (514)
T ss_pred cccccccCcccceee
Confidence 333344444555543
No 35
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=50.42 E-value=61 Score=33.97 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=45.8
Q ss_pred EEEEEEEECCcccCHHHHHHHh---hhhhcCc---cHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEE
Q 009626 78 RVHDVIVKGNTKTKDCLIEAEL---DAIRNAT---TMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQ 151 (530)
Q Consensus 78 ~i~~V~i~G~~~tk~~vI~r~l---~~~~G~~---~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~ 151 (530)
.|=.|.|+|+....+..|+..| .+++|.. .+.+.|++. . +.+.+=+.-|.+.++ | ..+.|+
T Consensus 104 fIW~IeI~Gn~~~t~~~i~~~L~e~Gi~~G~~k~~id~~~ie~~--l---~~~~~~i~WV~v~i~-------G-Trl~i~ 170 (382)
T TIGR02876 104 FIWKIDITGVKGETPYEIRKQLKEMGIKPGVWKFSVDVYKLERK--L---LDRVPEIMWAGVRVR-------G-TTLVIK 170 (382)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHcCCCcCeeeCCCCHHHHHHH--H---HhhCCCcEEEEEEEE-------e-EEEEEE
Confidence 4678999999999999999988 5778875 777777763 2 334455566776665 2 346666
Q ss_pred EEEe
Q 009626 152 VVET 155 (530)
Q Consensus 152 V~E~ 155 (530)
|+|+
T Consensus 171 v~Ek 174 (382)
T TIGR02876 171 VVEK 174 (382)
T ss_pred EEec
Confidence 6665
No 36
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=42.33 E-value=45 Score=31.81 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=27.4
Q ss_pred EEEEEECCcccCHHHHHHHhhhh-hcCccHHHHHHHHHHHHHHhhhC
Q 009626 80 HDVIVKGNTKTKDCLIEAELDAI-RNATTMQEIIQAANIINYKLREL 125 (530)
Q Consensus 80 ~~V~i~G~~~tk~~vI~r~l~~~-~G~~~~~~~l~~~~~~~~rL~~l 125 (530)
++-.|.-..-+++|++.-+-..- +--|.+.+++.+. .++|..+
T Consensus 65 NRyaf~D~d~LP~WF~eDE~kH~k~~~Pvtke~v~~~---k~k~~ei 108 (215)
T PF07780_consen 65 NRYAFNDDDGLPDWFVEDEKKHNKPQLPVTKEEVAEY---KEKLREI 108 (215)
T ss_pred cccccCCCCCCchhHHHHHHhhcCCCCCCCHHHHHHH---HHHHHHH
Confidence 34444434478899999888543 5557888877764 5555444
No 37
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=38.04 E-value=66 Score=31.97 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHhcCCCCCEEEEEEEEECCcccCH------HHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCC
Q 009626 58 VDRPKIENLFRRIRNGPVPLRVHDVIVKGNTKTKD------CLIEAELDAIRNATTMQEIIQAANIINYKLRELEC 127 (530)
Q Consensus 58 ~~~~~~~~~~~~~~~~g~~~~i~~V~i~G~~~tk~------~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~ 127 (530)
.+..-+.+.+..+.-....-.|++..|+....+.. .-+.|++.| |.+ .+..+..+..+|..+|+
T Consensus 32 nn~~~L~~kl~ei~~~~~~pWiE~L~vts~~~~~~~~~d~~dD~~RE~aF-----y~q-Al~av~~a~~~L~~~gi 101 (271)
T PF05890_consen 32 NNKEALKQKLKEIKLPKKLPWIETLDVTSPEPTDEQIKDVNDDLKRELAF-----YKQ-ALEAVKEARPRLKKLGI 101 (271)
T ss_pred cCHHHHHHHHHHhcccCCCCCeeEEeeecCccchhhhccccccHHHHHHH-----HHH-HHHHHHHHHHHHHHcCC
Confidence 34555555555554223455688999886554442 335777776 332 33444456999999986
No 38
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=35.45 E-value=18 Score=33.54 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=9.2
Q ss_pred CHHHHHHHhhhhhcCccHHHHHHH
Q 009626 91 KDCLIEAELDAIRNATTMQEIIQA 114 (530)
Q Consensus 91 k~~vI~r~l~~~~G~~~~~~~l~~ 114 (530)
..++.++ +.+..|.-..+..|..
T Consensus 153 lrSlTRr-~Lyh~~e~~l~r~l~d 175 (187)
T PF11081_consen 153 LRSLTRR-CLYHRGEDQLQRTLED 175 (187)
T ss_pred HHHHHHH-HHHHhhhHHHHHHHHH
Confidence 3333434 3344444333444443
No 39
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.13 E-value=28 Score=40.90 Aligned_cols=6 Identities=17% Similarity=0.036 Sum_probs=2.4
Q ss_pred EEEEEE
Q 009626 79 VHDVIV 84 (530)
Q Consensus 79 i~~V~i 84 (530)
+.+|.|
T Consensus 1797 ~dRieV 1802 (3015)
T KOG0943|consen 1797 GDRIEV 1802 (3015)
T ss_pred cceeEE
Confidence 334443
No 40
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=32.37 E-value=39 Score=36.14 Aligned_cols=58 Identities=33% Similarity=0.540 Sum_probs=0.0
Q ss_pred CCCCCC--CCCCCCC-------------CCCCCcccccccc-------ccccccccccCCCccccccccCccCCCccchH
Q 009626 4 AGGIPG--PEQKPEA-------------LNPNLDEIEEEEE-------EDDDVVEEEDDDDLEEDDDAAQPQRKSRVDRP 61 (530)
Q Consensus 4 ~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (530)
|||-+| |.|.|.. +....|+++||+- -+-|++|++++||+|+.|+...-.-+++-++.
T Consensus 39 aggggGslp~Q~p~~tgalHlrrvesa~~~e~~Ed~deE~~~~g~asgsdsEe~ed~~~Edge~~eEnskgE~ks~~dda 118 (694)
T KOG4264|consen 39 AGGGGGSLPAQNPPQTGALHLRRVESAKPAESVEDDDEEPAPAGKASGSDSEEKEDEAAEDGEEDEENSKGEEKSNLDDA 118 (694)
T ss_pred ccCCCCcCcccCCCccCccchhcccccCccccccccccccccccccccCCcccccccccccCccccccccchhhhhhhhh
No 41
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.77 E-value=38 Score=35.84 Aligned_cols=10 Identities=10% Similarity=-0.110 Sum_probs=3.9
Q ss_pred EEEEEEEEec
Q 009626 175 TVEGSLKYKN 184 (530)
Q Consensus 175 ~~~~~~~~~N 184 (530)
-..+++-.++
T Consensus 501 DI~VGLplPW 510 (588)
T KOG1307|consen 501 DILVGLPLPW 510 (588)
T ss_pred heeecCCcHH
Confidence 3333333344
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=31.42 E-value=3.3e+02 Score=31.38 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=6.1
Q ss_pred eeEEEEEEeCCC
Q 009626 289 SLKYTFKFDKRN 300 (530)
Q Consensus 289 sl~~~~~~d~rd 300 (530)
++++.+.|+++-
T Consensus 735 ~~~~~~~~~~~~ 746 (765)
T PRK10049 735 DAGATLRWDKRP 746 (765)
T ss_pred eeeeeeeecCCC
Confidence 455555555543
No 43
>PF14851 FAM176: FAM176 family
Probab=28.93 E-value=38 Score=30.48 Aligned_cols=12 Identities=17% Similarity=-0.020 Sum_probs=4.9
Q ss_pred cCHHHHHHHhhh
Q 009626 90 TKDCLIEAELDA 101 (530)
Q Consensus 90 tk~~vI~r~l~~ 101 (530)
++.+-+.++=++
T Consensus 114 ~sae~~e~A~rl 125 (153)
T PF14851_consen 114 TSAEELERAQRL 125 (153)
T ss_pred ccHHHHHHHHHH
Confidence 444444443333
No 44
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=28.37 E-value=38 Score=36.63 Aligned_cols=19 Identities=5% Similarity=0.140 Sum_probs=9.3
Q ss_pred eeeEEEE-EeeCceEEEEEE
Q 009626 488 SVGAGIV-FPTNLFRLEVNY 506 (530)
Q Consensus 488 s~G~Glr-~~tp~g~l~ldy 506 (530)
+-|+-+. +..|...|-+.+
T Consensus 706 gsgfevas~~ipm~tii~si 725 (727)
T PF05642_consen 706 GSGFEVASLMIPMATIIISI 725 (727)
T ss_pred cCcceeeeeeeeceeeEEEe
Confidence 4455444 344665555443
No 45
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=28.29 E-value=41 Score=39.17 Aligned_cols=9 Identities=11% Similarity=0.235 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 009626 61 PKIENLFRR 69 (530)
Q Consensus 61 ~~~~~~~~~ 69 (530)
..+..++..
T Consensus 429 eel~~lL~~ 437 (840)
T PF04147_consen 429 EELLELLDG 437 (840)
T ss_pred HHHHHHHhc
Confidence 333333333
No 46
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=28.08 E-value=48 Score=37.99 Aligned_cols=19 Identities=5% Similarity=0.216 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhcCCCCCEE
Q 009626 60 RPKIENLFRRIRNGPVPLR 78 (530)
Q Consensus 60 ~~~~~~~~~~~~~~g~~~~ 78 (530)
+.|+...|..-..+..+.+
T Consensus 967 q~yL~dFl~efa~~d~~~f 985 (1005)
T KOG2274|consen 967 QAYLTDFLKEFASQDRPCF 985 (1005)
T ss_pred HHHHHHHHHHHHhcCCcch
Confidence 5677777777664444443
No 47
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=28.02 E-value=42 Score=31.93 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=7.1
Q ss_pred ccchHHHHHHHHHhc
Q 009626 57 RVDRPKIENLFRRIR 71 (530)
Q Consensus 57 ~~~~~~~~~~~~~~~ 71 (530)
..+...+-..|..+.
T Consensus 74 ~~~~e~v~~~f~~i~ 88 (211)
T PF04546_consen 74 GPDPEEVLERFDEIR 88 (211)
T ss_dssp ---HHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHH
Confidence 334555666666654
No 48
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=27.91 E-value=2.7e+02 Score=21.10 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=39.2
Q ss_pred CCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEc
Q 009626 74 PVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLD 136 (530)
Q Consensus 74 g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~ 136 (530)
.+.+++.++.+.++. + ...|...+...+.+. .++|.+.++|..|.+.--
T Consensus 11 P~~v~l~~l~~~~~~----------l-~i~G~a~~~~~v~~f---~~~L~~~~~f~~v~l~~~ 59 (78)
T PF05137_consen 11 PEGVWLTSLSINGNT----------L-SISGYADSYQSVAAF---LRNLEQSPFFSDVSLSSI 59 (78)
T ss_pred CCCEEEEEEEEeCCE----------E-EEEEEECCHHHHHHH---HHHHhhCCCccceEEEEE
Confidence 567899999999882 2 236888888888886 999999999999887654
No 49
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=26.51 E-value=32 Score=30.84 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=2.4
Q ss_pred HHHHHH
Q 009626 63 IENLFR 68 (530)
Q Consensus 63 ~~~~~~ 68 (530)
|+.++.
T Consensus 90 l~eiLa 95 (149)
T PF08595_consen 90 LEEILA 95 (149)
T ss_pred HHHHhc
Confidence 344433
No 50
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=26.40 E-value=84 Score=31.28 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=12.5
Q ss_pred CccCCCccchHHHHHHHHHhc
Q 009626 51 QPQRKSRVDRPKIENLFRRIR 71 (530)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~ 71 (530)
..-+....+...+..+++.+.
T Consensus 62 E~~~p~d~D~~giknLL~Qlf 82 (308)
T KOG3034|consen 62 EAYSPSDVDADGIKNLLQQLF 82 (308)
T ss_pred cccCCCCcchHHHHHHHHHHh
Confidence 334444566667777776665
No 51
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=25.56 E-value=42 Score=38.68 Aligned_cols=10 Identities=10% Similarity=-0.054 Sum_probs=5.0
Q ss_pred HHHhhhCCCc
Q 009626 119 NYKLRELECF 128 (530)
Q Consensus 119 ~~rL~~lg~F 128 (530)
..-+.++-.+
T Consensus 227 i~gv~niy~~ 236 (1024)
T KOG1999|consen 227 IEGVRNIYAN 236 (1024)
T ss_pred Hhhhhhheec
Confidence 5555555444
No 52
>PHA02644 hypothetical protein; Provisional
Probab=25.29 E-value=52 Score=25.94 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q 009626 12 QKPEALNPN 20 (530)
Q Consensus 12 ~~~~~~~~~ 20 (530)
.|||+|.++
T Consensus 78 kkpekpene 86 (112)
T PHA02644 78 KKPEKPENE 86 (112)
T ss_pred cCCCCCccc
Confidence 445555443
No 53
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=25.24 E-value=2.5e+02 Score=29.41 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=42.8
Q ss_pred EEEEEEEECCcccCHHHHHHHh---hhhhcCc---cH-HHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEE
Q 009626 78 RVHDVIVKGNTKTKDCLIEAEL---DAIRNAT---TM-QEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVII 150 (530)
Q Consensus 78 ~i~~V~i~G~~~tk~~vI~r~l---~~~~G~~---~~-~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v 150 (530)
.|=.|+|+|+.+..+..|+..| .+++|.. .+ .+.+++. .+ .+.+=+.-|.+.+. | ..+.|
T Consensus 107 fIW~IeI~Gn~~~~~~~I~~~L~e~Gi~~G~~k~~id~~~~ie~~--l~---~~~~~i~WV~i~~~-------G-T~l~I 173 (385)
T PF06898_consen 107 FIWSIEIEGNEPVTEEEILQFLEENGIKPGAWKFKIDSCEEIEKK--LR---KQFPDISWVGIEIK-------G-TRLII 173 (385)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHcCCCcCeeecCCChHHHHHHH--HH---hhCCCeEEEEEEEE-------e-eEEEE
Confidence 4679999999999999999988 5777874 33 3444442 12 34455566776665 1 24555
Q ss_pred EEEEec
Q 009626 151 QVVETK 156 (530)
Q Consensus 151 ~V~E~~ 156 (530)
+|+|+.
T Consensus 174 ~v~E~~ 179 (385)
T PF06898_consen 174 EVVEKV 179 (385)
T ss_pred EEEEcC
Confidence 666653
No 54
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=22.86 E-value=62 Score=34.90 Aligned_cols=11 Identities=0% Similarity=0.217 Sum_probs=6.8
Q ss_pred ccCHHHHHHHh
Q 009626 89 KTKDCLIEAEL 99 (530)
Q Consensus 89 ~tk~~vI~r~l 99 (530)
.+.+..|+|-+
T Consensus 377 ~ite~~lRRWv 387 (548)
T PF02459_consen 377 RITESFLRRWV 387 (548)
T ss_pred cccHHHHHHHH
Confidence 45566666655
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=22.54 E-value=6.3e+02 Score=29.48 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=6.4
Q ss_pred eeeEEEEEEeCC
Q 009626 288 SSLKYTFKFDKR 299 (530)
Q Consensus 288 ~sl~~~~~~d~r 299 (530)
..+++++.++++
T Consensus 791 ~~~~ygi~~~~~ 802 (822)
T PRK14574 791 IDTGVAVVYDKR 802 (822)
T ss_pred eeEEEEEEecCC
Confidence 345555555554
No 56
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=21.99 E-value=63 Score=32.09 Aligned_cols=11 Identities=27% Similarity=0.057 Sum_probs=7.0
Q ss_pred CCCCCCCCCCC
Q 009626 9 GPEQKPEALNP 19 (530)
Q Consensus 9 ~~~~~~~~~~~ 19 (530)
-|+||+-.+.+
T Consensus 246 ~Ph~k~ive~k 256 (355)
T KOG3593|consen 246 RPHQKLIVEIK 256 (355)
T ss_pred CCCcccccccc
Confidence 68888844433
No 57
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=21.76 E-value=46 Score=34.17 Aligned_cols=7 Identities=43% Similarity=0.487 Sum_probs=3.2
Q ss_pred HHhhhCC
Q 009626 120 YKLRELE 126 (530)
Q Consensus 120 ~rL~~lg 126 (530)
.+|.+|.
T Consensus 202 ~Nl~SLe 208 (390)
T KOG2897|consen 202 MNLLSLE 208 (390)
T ss_pred HHHHHHH
Confidence 3444444
No 58
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=21.60 E-value=4.6e+02 Score=22.54 Aligned_cols=46 Identities=22% Similarity=0.404 Sum_probs=28.9
Q ss_pred cCceeeeeEEEEEee-CceEEEEEEEEeccc-cCCCCCcccEEEeccC
Q 009626 483 QSTRSSVGAGIVFPT-NLFRLEVNYCRILKK-SSHDHGKNGIQISLSA 528 (530)
Q Consensus 483 ~~~~~s~G~Glr~~t-p~g~l~ldya~pl~~-~~~d~~~~gf~f~~g~ 528 (530)
..+...+|+|+.|.. +...|++.|.+.... ...|....+++++++.
T Consensus 127 ~~~~~~~g~G~~y~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~g~~y 174 (176)
T PF13505_consen 127 SGFGFGLGAGVEYNISDNFSLNAEYRYTFYDSNKNDYDNNGFQLGVGY 174 (176)
T ss_dssp EEEEEEEEEEEEEESSTTEEEEEEEEEEEE--E-TTEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEEEECCCEEEEEEEEEEEEEeeccCCcEEEEEEEEEE
Confidence 567788899999876 666777777663332 1234344557777763
No 59
>PF05340 DUF740: Protein of unknown function (DUF740); InterPro: IPR008004 This family consists of several uncharacterised plant chloroplastic proteins of unknown function.
Probab=21.42 E-value=64 Score=35.24 Aligned_cols=13 Identities=8% Similarity=-0.107 Sum_probs=8.6
Q ss_pred ceEEEEEEEEeccc
Q 009626 499 LFRLEVNYCRILKK 512 (530)
Q Consensus 499 ~g~l~ldya~pl~~ 512 (530)
.|.|||++. |++.
T Consensus 584 NGmLRFYLT-PmRS 596 (603)
T PF05340_consen 584 NGMLRFYLT-PMRS 596 (603)
T ss_pred CceEEEEec-cccC
Confidence 688888654 5554
No 60
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=20.44 E-value=37 Score=34.60 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=7.7
Q ss_pred chHHHHHHHHHhc
Q 009626 59 DRPKIENLFRRIR 71 (530)
Q Consensus 59 ~~~~~~~~~~~~~ 71 (530)
+...++..+.++.
T Consensus 129 d~~~f~r~l~k~a 141 (449)
T KOG3871|consen 129 DAALFERFLKKSA 141 (449)
T ss_pred hHHHHHHHhcccc
Confidence 4455666666665
Done!