Query 009626
Match_columns 530
No_of_seqs 182 out of 1201
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:24:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdz_A TPSB transporter FHAC; 100.0 2.5E-35 8.6E-40 321.3 40.6 381 78-529 135-553 (554)
2 3q6b_A Outer membrane protein 99.1 7.1E-11 2.4E-15 109.9 5.6 79 72-154 111-189 (189)
3 2x8x_X TLR1789 protein, OMP85; 98.6 3.4E-08 1.1E-12 94.5 4.8 80 72-156 150-234 (235)
4 3mc9_A ALR2269 protein; polype 98.5 1.6E-08 5.4E-13 101.6 0.1 80 72-156 217-308 (316)
5 2qdf_A OMP85, outer membrane p 98.4 3.5E-07 1.2E-11 92.4 6.7 82 72-158 245-331 (335)
6 3efc_A OMP85, outer membrane p 98.2 1.5E-07 5.1E-12 97.6 -0.6 65 72-139 325-389 (395)
7 3mc9_A ALR2269 protein; polype 98.0 9.5E-06 3.2E-10 81.3 7.7 83 67-156 52-138 (316)
8 3efc_A OMP85, outer membrane p 97.8 3.5E-05 1.2E-09 79.6 7.5 91 72-164 244-336 (395)
9 2x8x_X TLR1789 protein, OMP85; 97.7 6.5E-05 2.2E-09 71.3 8.1 76 74-156 2-77 (235)
10 3q6b_A Outer membrane protein 97.4 0.00051 1.7E-08 63.2 9.7 92 72-165 30-123 (189)
11 2qdf_A OMP85, outer membrane p 97.1 0.00071 2.4E-08 67.9 7.7 71 76-157 7-77 (335)
12 2vh1_A FTSQ, cell division pro 91.3 0.4 1.4E-05 44.5 7.2 69 79-157 1-72 (220)
13 2vh2_A FTSQ, cell division pro 91.1 0.3 1E-05 46.7 6.2 74 74-157 23-98 (255)
14 2qdz_A TPSB transporter FHAC; 84.2 0.2 6.8E-06 53.5 -0.0 81 71-156 50-135 (554)
No 1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=100.00 E-value=2.5e-35 Score=321.28 Aligned_cols=381 Identities=11% Similarity=0.067 Sum_probs=269.3
Q ss_pred EEEEEEEECCcccCHHHHHH---HhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEE
Q 009626 78 RVHDVIVKGNTKTKDCLIEA---ELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVE 154 (530)
Q Consensus 78 ~i~~V~i~G~~~tk~~vI~r---~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E 154 (530)
+|++|+|.|+.++++.+|++ ++++++|++++.+.|+++ +++|.+++ .+|.+.+.++ ..++.++|+|+|+|
T Consensus 135 ~i~~I~i~G~~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~---~~~L~~~~--~~v~~~~~p~--~~~g~~~l~v~v~e 207 (554)
T 2qdz_A 135 RIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQA---IYNINNGG--KTGNITIVPA--DEYGYSYLDLQLQR 207 (554)
T ss_dssp EEEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHH---HHHHCSSS--EEEEEEEEEC--SSTTEEEEEEEEEE
T ss_pred EEEEEEECCCCccchhhhhhhhhhccccCCCcCCHHHHHHH---HHHHhcCc--hhceEEEecC--CCCCeeEEEEEEee
Confidence 38999999999999999999 999999999999999996 99999999 7888888854 56889999999999
Q ss_pred ecCCceeeeeE-E-e--eCCccceEEEEEEEEecCCCCccEEEEEEEEee------eeeeEEEEEEeeeeecCCCCcceE
Q 009626 155 TKTPLSGQIGT-Y-T--KGEAKSSTVEGSLKYKNGFGYGDLWDASLAYGF------DRSAEVSAGVYLPRFKGLVTPMTA 224 (530)
Q Consensus 155 ~~~~~~g~~g~-~-~--s~~~~~~~~~~~~~~~Nl~G~G~~l~~~~~~g~------~~~~~~~~~~~~P~~~~~~~~~~~ 224 (530)
+++ +.+.+|+ + + +...+++.+.+.+++.|++|.|+++++++..+. ...+.+.++|+.|+.. +.+.+
T Consensus 208 ~~~-~~~~~g~~~~g~g~~~tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~~---~~~~~ 283 (554)
T 2qdz_A 208 RAL-PRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGR---TRLDL 283 (554)
T ss_dssp CCS-CEEEEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEETT---EEEEE
T ss_pred CCc-EEEEEEEcCCCCCCCCccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEec---CeEEE
Confidence 864 4666764 2 2 222356899999999999999999999999986 1367899999999863 45555
Q ss_pred EEEeeecccc---cc--ccceEEEEEEEEEEc------ccceEEEEEEEEEEEcCCCCCCCcHHHHHHhCCcceeeeEEE
Q 009626 225 RVFLQSQDWL---KF--SSYKEQSLGLSLGLF------SIRHHDLVYNLAWRTLTDPSHMSSNTVRRQLGHDFLSSLKYT 293 (530)
Q Consensus 225 ~~~~~~~~~~---~~--~s~~~~~~g~~~~l~------~~~~~~l~~~~~~~~~~~~~~~~s~~i~~~~g~~~~~sl~~~ 293 (530)
.+++...+.. .. ..|...+.++++++. ....+.+++.+.++++.+...... + ..+.....++.++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~ 359 (554)
T 2qdz_A 284 QTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTR--L--DVSSKHYSDVTVG 359 (554)
T ss_dssp EEEEEEEECCCSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTS--C--CCEEEEEEEEEEE
T ss_pred EEEEeEEEEEccCCcceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcC--c--cccCceEEEEEEE
Confidence 5555443211 01 134444455554442 245566666666665532111110 0 0123345678889
Q ss_pred EEEeCCCCCCCCCceeeEEEEEEeee-cCCC--------cccceeeeeEeeeEEEEEe--cccceEEEEEEEEEEEeecC
Q 009626 294 FKFDKRNSPLRPTRGYAFVSTTQIGG-LAPD--------SRCLRFLRQEFDLRFAVPF--GFYRTALNFGISSGVVLPIG 362 (530)
Q Consensus 294 ~~~d~rd~~~~Pt~G~~~~~~~~~~g-lg~~--------~~~~~f~k~~~~~~~~~~l--~~~~~~l~~~~~~G~i~~~~ 362 (530)
+.||+++ |..++.+++.+..+. ++.. ..+.+|.|+.+++++|+|| ...++++.+++.+++.
T Consensus 360 ~~~~~~~----~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~q~~---- 431 (554)
T 2qdz_A 360 MQYSTQR----GANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYS---- 431 (554)
T ss_dssp EEEEEEC----SSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEC----
T ss_pred EEEEEEe----cCeEEEEEEEEEecCCCCCCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEEEEEEEEeEec----
Confidence 9999875 444555544443211 1100 0237899999999999996 2145667666666543
Q ss_pred CCcccCCCCCCcccccCCCCCCcccCCCCCcccCccCCCCCCCCCCcCCCCCCCCCCcCCCCCcccCceeEEEeceEEEE
Q 009626 363 RDFLRMSTSLPERFFLGGNLSPICSLGGPSALWGFKTRGLGPAEPRRQVRGDSSDENADASERDFLGGDLAVSAFADLSF 442 (530)
Q Consensus 363 ~~~~~~~~p~~drF~lGg~~~~~~~~gG~~slRGf~~~~lGP~~~~~~~~~~~~~~~~~~~~~~~~GG~~~~~~~~el~~ 442 (530)
. ..+|.+|+|++| |.++||||..++++|. +..+.+++|++|
T Consensus 432 ~----~~lp~~e~f~lG----------G~~sVRGy~~~~l~pG-------------------------d~g~~~~~El~~ 472 (554)
T 2qdz_A 432 R----QQLLNSYQITVG----------DEYTVRGYNLRTSQSG-------------------------DSGVYLSNTLTV 472 (554)
T ss_dssp S----SCSSSSEECCSC----------CCCCCTTCCCCCSCCS-------------------------SCSSCCEESEEE
T ss_pred C----CCCCcHHhEecC----------CCCeECCcccccccCC-------------------------CccEEEEEEEEe
Confidence 2 369999999999 8899999998888764 233568889999
Q ss_pred eCCcccccC-CCeeEEEEeecccccccCcccccCCChhhhccCceeeeeEEEEEeeCceEEEEEEEEecccc-CCCCCcc
Q 009626 443 DLPLRWFRE-KGIHGHLFACAGNVAKLTENEYRNFSLPKFLQSTRSSVGAGIVFPTNLFRLEVNYCRILKKS-SHDHGKN 520 (530)
Q Consensus 443 ~lp~~~~~~-~~~~~~~F~DaG~v~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~~tp~g~l~ldya~pl~~~-~~d~~~~ 520 (530)
++...+... ..+.+++|+|+|+||+.... . ...+++|+|+||||.+|.+|++|+||+||.+. +++....
T Consensus 473 ~~~~~~~~~~~~~~~~~F~D~G~v~~~~~~------~---~~~~~~g~G~Glr~~~~~~~l~l~~a~pl~~~~~~~~~~~ 543 (554)
T 2qdz_A 473 PVQFSLLGKQASVAPFVGADVGALKSNHPD------A---RTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAP 543 (554)
T ss_dssp EEEEEEEECCSSCEEEEEEEEEEEECSSSS------C---CEEEEEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCC
T ss_pred eccccccCccceEEEEEEEEEEEEecCCCC------C---CCCEEEEEEEEEEEecCcEEEEEEEEeeccCCcccccCCc
Confidence 861100111 36899999999999986421 0 24678999999999999999999999999887 5541223
Q ss_pred cE-EEeccCC
Q 009626 521 GI-QISLSAP 529 (530)
Q Consensus 521 gf-~f~~g~~ 529 (530)
.| +|+||..
T Consensus 544 ~~~~fsig~~ 553 (554)
T 2qdz_A 544 VWLYINAGLS 553 (554)
T ss_dssp SEEEEEEEEE
T ss_pred eEEEEEEEEE
Confidence 49 9999864
No 2
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.08 E-value=7.1e-11 Score=109.86 Aligned_cols=79 Identities=20% Similarity=0.380 Sum_probs=73.0
Q ss_pred CCCCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEE
Q 009626 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQ 151 (530)
Q Consensus 72 ~~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~ 151 (530)
++|++++|++|.|.|+.++++.+|++++++++|++|+.+.++++ +++|.++|+|++|++.+.+.+ ..++.++|.|+
T Consensus 111 ~eG~~~~i~~I~i~Gn~~~~~~~i~r~l~~~~G~~~n~~~l~~~---~~~L~~lg~F~~V~i~~~~~~-~~~~~vdv~v~ 186 (189)
T 3q6b_A 111 DAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQG---KERLNRLGFFETVDTDTQRVP-GSPDQVDVVYK 186 (189)
T ss_dssp ECCCCCEEEEEEEESCSSSCHHHHHTTCCSCTTSBCCHHHHHHH---HHHHHHHSCCSEEEEEEEEET-TEEEEEEEEEE
T ss_pred CCCCeEEEEEEEEECCccCCHHHHHhhccCCCCCccCHHHHHHH---HHHHHhCCCceeeEEEeccCC-CCCCEEEEEEE
Confidence 58999999999999999999999999999999999999999996 999999999999999998643 25788999999
Q ss_pred EEE
Q 009626 152 VVE 154 (530)
Q Consensus 152 V~E 154 (530)
|+|
T Consensus 187 V~E 189 (189)
T 3q6b_A 187 VKE 189 (189)
T ss_dssp EEC
T ss_pred EEC
Confidence 987
No 3
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=98.57 E-value=3.4e-08 Score=94.48 Aligned_cols=80 Identities=26% Similarity=0.405 Sum_probs=72.4
Q ss_pred CCCC--CEEEEEEEEECCc---ccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCce
Q 009626 72 NGPV--PLRVHDVIVKGNT---KTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTS 146 (530)
Q Consensus 72 ~~g~--~~~i~~V~i~G~~---~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v 146 (530)
++|+ +++|++|.|.|+. ++++.+|++++++++|++|+.+.++++ +++|.++|+|++|.+.+.++ ..++.+
T Consensus 150 ~eG~~~~i~i~~i~~~G~~~~~~~~~~~i~~~~~~~~G~~~~~~~l~~~---~~~L~~~g~f~~v~i~~~~~--~~~~~~ 224 (235)
T 2x8x_X 150 AEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQAD---LRRLFELGLFEDVQVALEPG--QNPRRV 224 (235)
T ss_dssp ECCBEEEEEEEEBCTTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHH---HHHHHHHTCEEEEEEEEEEC--SSTTSE
T ss_pred EeCceEEEEEEEecccCCcCCCccchhheeeeeecCCCCccCHHHHHHH---HHHHHhcCCcccceEEeccC--CCCCee
Confidence 5788 6688899999998 999999999999999999999999996 99999999999999998864 457889
Q ss_pred EEEEEEEEec
Q 009626 147 NVIIQVVETK 156 (530)
Q Consensus 147 ~l~v~V~E~~ 156 (530)
+|.|.|+|++
T Consensus 225 ~l~i~v~e~~ 234 (235)
T 2x8x_X 225 NLILNIKERN 234 (235)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEeCC
Confidence 9999999986
No 4
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=98.49 E-value=1.6e-08 Score=101.59 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=3.0
Q ss_pred CCC--CCEEEEEEEEE-------CC---cccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCC
Q 009626 72 NGP--VPLRVHDVIVK-------GN---TKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGP 139 (530)
Q Consensus 72 ~~g--~~~~i~~V~i~-------G~---~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~ 139 (530)
++| .+++|+.|.|. |+ .+|++++|+|++++++|++|+.+.|+++ +++|.+||+|++|.+.+.++
T Consensus 217 ~eG~i~~i~v~~i~~~Gn~~~~~Gn~i~~~t~~~vI~r~l~~~~G~~yn~~~l~~~---~~~L~~lg~F~~V~v~~~p~- 292 (316)
T 3mc9_A 217 AEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQKD---LQRVFGTGLFEDVNVSLDPG- 292 (316)
T ss_dssp ECCEEC--------------------------------------------------------------------------
T ss_pred EcCccccEEEEEEeccccccccCCcccccccCHHHHHhhhccCCCCcCCHHHHHHH---HHHHHcCCCcceeeEEeecC-
Confidence 678 78889888888 55 6899999999999999999999999996 99999999999999999865
Q ss_pred CCCCCceEEEEEEEEec
Q 009626 140 PELPGTSNVIIQVVETK 156 (530)
Q Consensus 140 ~~~~~~v~l~v~V~E~~ 156 (530)
..+++++|+|+|+|+.
T Consensus 293 -~~~~~vdl~v~v~e~~ 308 (316)
T 3mc9_A 293 -TDPTKVNVVVNVVERS 308 (316)
T ss_dssp -----------------
T ss_pred -CCCCeEEEEEEEEEcc
Confidence 5688999999999985
No 5
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=98.37 E-value=3.5e-07 Score=92.41 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=72.2
Q ss_pred CCCCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhh----hCCC-cceeEEEEcCCCCCCCCce
Q 009626 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLR----ELEC-FDSVEITLDSGPPELPGTS 146 (530)
Q Consensus 72 ~~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~----~lg~-F~~V~i~~~~~~~~~~~~v 146 (530)
++|++++|++|.|.|+.++++.+|++.+++++|++|+...++++ +++|. ++|+ |.+|.+.+.++ ..++++
T Consensus 245 ~eG~~~~i~~I~i~g~~~~~~~~l~~~~~~~~G~~~~~~~l~~~---~~~l~~~~~~~Gy~f~~v~~~~~~~--~~~~~v 319 (335)
T 2qdf_A 245 TEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKM---EDDIKKLLGRYGYAYPRVQSMPEIN--DADKTV 319 (335)
T ss_dssp ECCCCCEEEEEEEEEECTTCHHHHHHHTCCCTTEECCHHHHHHH---HHHHHHHHHTTTBSSCEEEEEEEEE--TTTTEE
T ss_pred ccCCcEEEEEEEEEccccCChHHHHHhcCCCCCCccCHHHHHHH---HHHHHHHHHhCCCCceEEEEeeEec--CCCCEE
Confidence 68999999999999999999999999999999999999999996 66666 5697 99998888753 457899
Q ss_pred EEEEEEEEecCC
Q 009626 147 NVIIQVVETKTP 158 (530)
Q Consensus 147 ~l~v~V~E~~~~ 158 (530)
+|.|.|+|.++.
T Consensus 320 dv~i~v~e~~~~ 331 (335)
T 2qdf_A 320 KLRVNVDAGNRF 331 (335)
T ss_dssp EEEEEEECCCBC
T ss_pred EEEEEEeeCCeE
Confidence 999999999753
No 6
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=98.20 E-value=1.5e-07 Score=97.60 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=7.3
Q ss_pred CCCCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCC
Q 009626 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGP 139 (530)
Q Consensus 72 ~~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~ 139 (530)
++|++++|++|.|.|+.+|++++|+|++.+++|++|+.+.++++ +++|.+||+|++|++.+.+.|
T Consensus 325 ~eG~~~~i~~I~i~Gn~~~~~~virr~~~~~~G~~y~~~~l~~~---~~~L~~lg~F~~V~i~~~~~~ 389 (395)
T 3efc_A 325 DAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQG---KERLNRLGFFETVDTDTQRVP 389 (395)
T ss_dssp ECCCCCCC------------------------------------------------------------
T ss_pred EeCCeEEEEEEEEECCCcCChHHHhhhcccCCCccCCHHHHHHH---HHHHHhCCCcceeeeeccCCC
Confidence 68999999999999999999999999999999999999999996 999999999999999988643
No 7
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=97.99 E-value=9.5e-06 Score=81.25 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=70.5
Q ss_pred HHHhcCCCCCEEEEEEEEECC----cccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCC
Q 009626 67 FRRIRNGPVPLRVHDVIVKGN----TKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPEL 142 (530)
Q Consensus 67 ~~~~~~~g~~~~i~~V~i~G~----~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~ 142 (530)
..-..+||++++|.+|.|+|+ ....+..|+..+.+++|+.|+.+.+++. .++|+++|+|.+|.+.++. .
T Consensus 52 ~~~~~~Eg~~~~I~~I~i~Gn~~~~~~~~~~~l~~~l~~k~G~~~~~~~l~~d---i~~L~~~GyF~~V~v~~~~----~ 124 (316)
T 3mc9_A 52 NATPETTEPRVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQED---INAIFGTGFFSNVQASPED----T 124 (316)
T ss_dssp ------CCCCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHH---HHHHHHTSCEEEEEEEEEE----E
T ss_pred CCCCCCCCCceEEEEEEEECCcccccccCHHHHHhhccCCCCCccCHHHHHHH---HHHHHHCCCceEEEEEEec----C
Confidence 344457899999999999999 8999999999999999999999999985 8999999999999998874 2
Q ss_pred CCceEEEEEEEEec
Q 009626 143 PGTSNVIIQVVETK 156 (530)
Q Consensus 143 ~~~v~l~v~V~E~~ 156 (530)
++.+.|+|.|.|.+
T Consensus 125 ~~~v~l~~~V~egp 138 (316)
T 3mc9_A 125 PLGVRVSFIVQPNP 138 (316)
T ss_dssp TTEEEEEEEEEECC
T ss_pred CCeEEEEEEEecCc
Confidence 46789999999996
No 8
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=97.76 E-value=3.5e-05 Score=79.60 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=71.3
Q ss_pred CCCCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHH-HHHHHhhhCCC-cceeEEEEcCCCCCCCCceEEE
Q 009626 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAAN-IINYKLRELEC-FDSVEITLDSGPPELPGTSNVI 149 (530)
Q Consensus 72 ~~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~-~~~~rL~~lg~-F~~V~i~~~~~~~~~~~~v~l~ 149 (530)
++|++++|++|.|.|+..+++..|++.+.+++|++|+.+.++++. ...+.|.+.|+ |.+|...++.. ...++++|.
T Consensus 244 ~eG~~y~i~~I~i~Gn~~~~~~~l~~~~~l~~G~~y~~~~l~~~~~~l~~~~~~~GY~~~~v~~~~~~~--~~~~~v~l~ 321 (395)
T 3efc_A 244 TEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEIN--DADKTVKLR 321 (395)
T ss_dssp ECCCCCEEEEECCBSCCTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEE--TTTTEEEEE
T ss_pred ecCCCEEEEEEEEECCCCCCHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHhCCCCccEEEEeeEec--CCCCEEEEE
Confidence 589999999999999999999999999999999999999998853 33677888999 46777655532 346789999
Q ss_pred EEEEEecCCceeeee
Q 009626 150 IQVVETKTPLSGQIG 164 (530)
Q Consensus 150 v~V~E~~~~~~g~~g 164 (530)
+.|.|.++..-+.+.
T Consensus 322 ~~v~eG~~~~i~~I~ 336 (395)
T 3efc_A 322 VNVDAGNRFYVRKIR 336 (395)
T ss_dssp EEEECCCCCCC----
T ss_pred EEEEeCCeEEEEEEE
Confidence 999998753223444
No 9
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=97.72 E-value=6.5e-05 Score=71.32 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=67.5
Q ss_pred CCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEE
Q 009626 74 PVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVV 153 (530)
Q Consensus 74 g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~ 153 (530)
++++.|.+|+|.|++....+.|+..+..++|+.++++.+.+. .++|+++|+|.+|.+.... .++.+.|++.|+
T Consensus 2 ~~~~~I~~I~i~G~~~~~~~~i~~~l~~~~g~~~~~~~~~~~---~~~L~~~Gyf~~~~v~~~~----~~~~~~l~~~v~ 74 (235)
T 2x8x_X 2 EPKVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQD---TNAIFATGFFADVNAVPRD----TPLGVRITFVVR 74 (235)
T ss_dssp CCCEEEEEEEEESCCHHHHHHHHHHCCCCTTCEECHHHHHHH---HHHHHTTSCEEEEEEEEEE----ETTEEEEEEEEE
T ss_pred CCccEEEEEEEECCCccCHHHHHHhhccCCCCccCHHHHHHH---HHHHHHCCCcEEEEEEEec----CCCcEEEEEEEE
Confidence 678999999999999999999999999999999999999885 8999999999888888763 235678999999
Q ss_pred Eec
Q 009626 154 ETK 156 (530)
Q Consensus 154 E~~ 156 (530)
|.+
T Consensus 75 eg~ 77 (235)
T 2x8x_X 75 PYP 77 (235)
T ss_dssp ECC
T ss_pred ecc
Confidence 987
No 10
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=97.44 E-value=0.00051 Score=63.24 Aligned_cols=92 Identities=13% Similarity=-0.000 Sum_probs=66.6
Q ss_pred CCCCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHH-HHHHHhhhCCCcc-eeEEEEcCCCCCCCCceEEE
Q 009626 72 NGPVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAAN-IINYKLRELECFD-SVEITLDSGPPELPGTSNVI 149 (530)
Q Consensus 72 ~~g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~-~~~~rL~~lg~F~-~V~i~~~~~~~~~~~~v~l~ 149 (530)
.++++++|++|.|.|+....++.|++.+.+++|++++...+++.. ...+.+.+.||+. .|...++.. ...+.++|.
T Consensus 30 ~~~~~y~i~~I~i~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d--~~~~~v~l~ 107 (189)
T 3q6b_A 30 QQMGRYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEIN--DADKTVKLR 107 (189)
T ss_dssp -----CEEEEEEEEEECTTCHHHHHHHTCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEE--TTTTEEEEE
T ss_pred CCCCCEEEEEEEEECCCcCCHHHHHHhhCCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEec--CCCCEEEEE
Confidence 478999999999999999999999999999999999998887764 4455667779974 666644422 235678999
Q ss_pred EEEEEecCCceeeeeE
Q 009626 150 IQVVETKTPLSGQIGT 165 (530)
Q Consensus 150 v~V~E~~~~~~g~~g~ 165 (530)
+.|.|.++..-+.+.+
T Consensus 108 ~~V~eG~~~~i~~I~i 123 (189)
T 3q6b_A 108 VNVDAGNRFYVRKIRF 123 (189)
T ss_dssp EEEECCCCCEEEEEEE
T ss_pred EEECCCCeEEEEEEEE
Confidence 9999987432345543
No 11
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=97.14 E-value=0.00071 Score=67.92 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=63.1
Q ss_pred CEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEEEEe
Q 009626 76 PLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQVVET 155 (530)
Q Consensus 76 ~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E~ 155 (530)
.+.|.+|+|+|++++.+..|+..+.+++|+.++...+.++ .++|+++|+|++|.+..+ + +.|++.|+|+
T Consensus 7 ~~~i~~i~v~G~~~~~~~~i~~~l~~~~g~~~~~~~i~~~---i~~L~~~g~f~~v~v~~~-------~-~~l~~~V~e~ 75 (335)
T 2qdf_A 7 GFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNT---IRALFATGNFEDVRVLRD-------G-DTLLVQVKER 75 (335)
T ss_dssp CEECCEEEEESCSSSCHHHHHHTSSCCTTCEECHHHHHHH---HHHHHTTSCEEEEEEEEE-------T-TEEEEEEEEC
T ss_pred CceEeEEEEECCEEcCHHHHHHhcCCCCCCccCHHHHHHH---HHHHHhCCCcceEEEEeC-------C-CEEEEEEEec
Confidence 6789999999999999999999999999999999999885 899999999999988742 1 3589999998
Q ss_pred cC
Q 009626 156 KT 157 (530)
Q Consensus 156 ~~ 157 (530)
+.
T Consensus 76 p~ 77 (335)
T 2qdf_A 76 PT 77 (335)
T ss_dssp CE
T ss_pred cE
Confidence 73
No 12
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=91.30 E-value=0.4 Score=44.55 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=53.9
Q ss_pred EEEEEEECCc-ccCHHHHHHHh-hhhhcCccHHHHHHHHHHHHHHhh-hCCCcceeEEEEcCCCCCCCCceEEEEEEEEe
Q 009626 79 VHDVIVKGNT-KTKDCLIEAEL-DAIRNATTMQEIIQAANIINYKLR-ELECFDSVEITLDSGPPELPGTSNVIIQVVET 155 (530)
Q Consensus 79 i~~V~i~G~~-~tk~~vI~r~l-~~~~G~~~~~~~l~~~~~~~~rL~-~lg~F~~V~i~~~~~~~~~~~~v~l~v~V~E~ 155 (530)
|.+|.|+|+. +++..-|+..+ .+..|..+..-.+.+ ++++|. ++.+.++|.|.-.- |++ |.|.|+|+
T Consensus 1 v~~V~V~G~~~~~s~~~I~~~~~~~~~~~~~~~vd~~~---i~~~l~~~~P~V~~a~V~r~~-----P~~--l~I~V~Er 70 (220)
T 2vh1_A 1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNI---IQTQIEQRLPWIKQVSVRKQW-----PDE--LKIHLVEY 70 (220)
T ss_dssp -CEEEEESCCSSCCHHHHHHHHHTTSCTTCGGGSCHHH---HHHHHHHHCTTEEEEEEEEET-----TTE--EEEEEEEC
T ss_pred CcEEEEeCCCccCCHHHHHHHHhhccCCCCeEEECHHH---HHHHHHhcCCCEEEEEEEEeC-----CCc--eEEEEEEe
Confidence 4689999998 68999998888 566667655555555 388999 99999999999763 564 68899999
Q ss_pred cC
Q 009626 156 KT 157 (530)
Q Consensus 156 ~~ 157 (530)
..
T Consensus 71 ~p 72 (220)
T 2vh1_A 71 VP 72 (220)
T ss_dssp CE
T ss_pred cc
Confidence 64
No 13
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=91.13 E-value=0.3 Score=46.73 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=55.5
Q ss_pred CCCEEEEEEEEECCc-ccCHHHHHHHh-hhhhcCccHHHHHHHHHHHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEE
Q 009626 74 PVPLRVHDVIVKGNT-KTKDCLIEAEL-DAIRNATTMQEIIQAANIINYKLRELECFDSVEITLDSGPPELPGTSNVIIQ 151 (530)
Q Consensus 74 g~~~~i~~V~i~G~~-~tk~~vI~r~l-~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~ 151 (530)
.+...|.+|.|+|+. .++..-|+..+ .+..|..+..-.+.+ ++++|.++.+.++|.|.-.- |+ .|.|.
T Consensus 23 sp~f~v~~I~V~G~~~~vs~~eI~~~~~~~~~g~~~~~vd~~~---i~~~l~~~PwV~~a~V~r~~-----P~--~L~I~ 92 (255)
T 2vh2_A 23 SSRLPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNI---IQQQIERLPWIQQASVRKQW-----PD--ELKIH 92 (255)
T ss_dssp ----CCCEEEEESCCSSCCHHHHHHHHTTSCCSSTTTSCHHHH---HHHHTSCCSSEEEEEEEEET-----TT--EEEEE
T ss_pred CCCceEeEEEEECCCcccCHHHHHHHHhcccCCCccEEEcHHH---HHHHHHcCCCeeEEEEEEEC-----CC--eEEEE
Confidence 345678999999998 58888888888 676656555444455 38899999999999999863 56 46889
Q ss_pred EEEecC
Q 009626 152 VVETKT 157 (530)
Q Consensus 152 V~E~~~ 157 (530)
|+|+..
T Consensus 93 V~Er~P 98 (255)
T 2vh2_A 93 LVEYVP 98 (255)
T ss_dssp EEECCC
T ss_pred EEEeee
Confidence 999974
No 14
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=84.15 E-value=0.2 Score=53.45 Aligned_cols=81 Identities=11% Similarity=-0.012 Sum_probs=57.4
Q ss_pred cCC---CCCEEEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHH-HHHHHhhhCCCc-ceeEEEEcCCCCCCCCc
Q 009626 71 RNG---PVPLRVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAAN-IINYKLRELECF-DSVEITLDSGPPELPGT 145 (530)
Q Consensus 71 ~~~---g~~~~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~-~~~~rL~~lg~F-~~V~i~~~~~~~~~~~~ 145 (530)
..| |++++|.+|+|+|++..+++.|++.+..++|++++.+.|.++. .+.+.+.+.|++ .+|.+..... ..+
T Consensus 50 ~~e~~~g~~~~i~~I~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~---~~g- 125 (554)
T 2qdz_A 50 KPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGV---VDG- 125 (554)
T ss_dssp ---CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEE---ETT-
T ss_pred CccccCCceEEEEEEEEECCccCCHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccc---cCC-
Confidence 347 9999999999999998888888888888899998887777654 345556778986 4565533210 122
Q ss_pred eEEEEEEEEec
Q 009626 146 SNVIIQVVETK 156 (530)
Q Consensus 146 v~l~v~V~E~~ 156 (530)
.|+|.|.|.+
T Consensus 126 -~l~i~v~eG~ 135 (554)
T 2qdz_A 126 -VLKLKVEWGR 135 (554)
T ss_dssp -EEEEEEECCE
T ss_pred -EEEEEEEeEE
Confidence 4788888875
Done!